Psyllid ID: psy11143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940
Protein Sequence
TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPGPTS
Secondary Structure (PSIPRED)
ccccccccEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEccccEEEcccEEEEEccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEEcccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEcccccEEEccccEEEcccccEEEEEEEccccccEEEEEEccEEccccccEEEEEccEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEcccccccccccEEEEEcccEEEEEEEEEEEcccEEEEEEccEEccccccEEEEEcccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEccccEEEcccccEEEEEEEEEccccEEEEEEccEEccccccEEEEEccEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccccEEEccccEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEcccEEEcccccccccEEEccEEEEccccccccEEEEEccccccccccccccccccccEEEEcccHHHHHHcccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHccccccccEEEccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccEEEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccEEEEccccccccccEEEEHHHHHHcccccccEEEEEccccccHHHHHHHHHHcEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEcccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEccccccEEEEcccEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEcccccEEEEEcccEEEEEEccccccEEEEEEEEEcccccccEEEEEEcccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEccEEcccccEEEEEcccEEEEEEEcccccccEEEEEEEEcccccccEEEEEEEcccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEcccccEEEEEcccEEEEEEcccccccEEEEEEEEccccccEEEEEEEEccccccccccccccccccEEEEEccEEEEEEEEEcccccccEEEcccEEEEcccEEEEcccEEEEEEEEcccccEEEEEEEcccccEEEEEEEEEEcccccccccccEHHHccccHHHHHHccccHHHHHHHHHcEEEccEccEcccHHHHccEcHHHccccEcHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHccHHHHHHHHHHHccHcccccccccHHHHHHHHHHHcccccccccccccccHcccccccccccccccccccccccEEcEccccccccccccccccccccHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHccccccccEEcccHHHcccccccHHHHHHHHHHHccccccHccHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccEccEcHHHHHHHccccHHHHHHHHcccccEccccEEEEcHHHccEEEEEEHHHHHHHHHHHHHHccccccEEcEcccccccccccccccccccEEcccccccccc
Coil and Loop (DISEMBL)
tddrrsstELVISgvqrehggryscvagnpagvyrgdlhvtvnappifiqrpvsttystgstsritclveghplpqmtwfhdgnsldsddhvtyehDGFVLVLNgvresdagvyncvaqnsegsaESVAMIRINghraprlvvkpfdmrapagssveipckpdgeplpriswskdeaefvedrnhkihrtgslrlynigpqdsglyrctasnllgedvaegyltvtgappifiqrpvsttystgstsritclveghplpqmtwfhdgnsldsddhvtyehDGFVLVLNgvresdagvyncvaqnsegsaESVAMIRINghraprlvvkpfdmrapagssveipckpdgeplpriswskdeaefvedrnhkihrtgslrlynigpqdsglyrctasnllgedvaegyltvtgensvepaphtsrepsaskpsvaddTIHMAVKLASREVDAAVNATINSLFgyhsneqqdhgslmkllrfpdesaRTVVRAADVYERTLSHIKKHIQAGVKMNlsedlslgkaffspwrlvdeggvdpllrgfitspakrkrptenlNKELTDKLFTTFHAVSLDLAAMNIqrgrdhgipeynawreycglprantFEDLAREITDRRVRDKLQrlyghpgfsyhdvlspRQIELIANLsgcmehqrtancsdlcfhtkyrtidgtcnnlqhpmwgaslTGFRRLlkpiyengfstpvapilsspmagnidpfVGAIledqvdggrvgptmRCLLIDQfkrirdgnidpfvgailedqvdggrvgptmRCLLIDQfkrirdgnidpfvgailedqvdggrvgptMRCLLIDQfkrirdgdrfwyenpstfkpaqlTQIKQASLARVICDsgdrltevrvcfsprpttsitpdpvITHMVMQWGqfldhdldhaipatsleswegidckkscafsppcfpmevphddpgpts
Flexible Loop (DISEMBL)
tddrrsstelvisgvqrehggrySCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRaprlvvkpfdmrapagssveipckpdgeplpRISWSKDEAEFVEdrnhkihrtgslrlynigpqDSGLYRCTASNLLGEDVAEGYLTVtgappifiqrpvsTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRaprlvvkpfdmrapagssveipckpdgeplpRISWSKDEAEFVEdrnhkihrtgslrlynigpqDSGLYRCTASNLLGEDVAEGYLTVTGENsvepaphtsrepsaskpsvaDDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLrgfitspakrkrptenlNKELTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGhpgfsyhdvlspRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILedqvdggrvgPTMRCLLIDQFKRIRDGNIDPFVGAILedqvdggrvgpTMRCLLIDQFKRIRDGDRFWYenpstfkpaqltqIKQASLARVICDSGDRLTevrvcfsprpttsitpdpvITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCfpmevphddpgpts
Low Complexity Region (SEG)
TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPGPTS
Disordered region (IsUnstruct)
***********ISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN******SVAMIRINGHRAPRLVVKPF*************************************NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN******SVAMIRINGHRAPRLVVKPF**************************************HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT**************************IHMAVKLASREVDAAVNATINSLFGYHS*******SLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFIT**************ELTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCF*************
Disordered Region (DISOPRED)
**DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN*********YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHT*R*****KPSVADDTIHMAVKLASREVDAAVNATINSLF***********SLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQA*************************GGVDPLLRGFITSPAKR*************KLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLARE*************YGHPGFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILE***************LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEV**D******
Disordered Region (DISEMBL)
*********LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN*******************ADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVP********
Disordered Region (DISPRO)
*****SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPGPTS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	940	2.2.26 [Sep-21-2011]
Q3UQ28	1475	Peroxidasin homolog OS=Mu	yes	N/A	0.476	0.303	0.315	4e-56
Q92626	1479	Peroxidasin homolog OS=Ho	yes	N/A	0.476	0.302	0.303	8e-54
A4IGL7	1457	Peroxidasin OS=Xenopus tr	yes	N/A	0.476	0.307	0.303	3e-53
Q9VZZ4	1527	Peroxidasin OS=Drosophila	yes	N/A	0.481	0.296	0.278	1e-49
A1KZ92	1463	Peroxidasin-like protein	no	N/A	0.480	0.308	0.288	3e-49
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.407	0.075	0.313	8e-44
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.422	0.078	0.298	1e-43
Q9HCK4	1378	Roundabout homolog 2 OS=H	no	N/A	0.488	0.333	0.273	5e-41
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.420	0.070	0.292	1e-40
Q7TPD3	1470	Roundabout homolog 2 OS=M	no	N/A	0.490	0.313	0.272	1e-40

>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2

 Score =  220 bits (561), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 222/475 (46%), Gaps = 27/475 (5%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL 103
           P     P     ++G+T   TC  EG+P P++ W  + N  S+ +D  +    DG +++ 
Sbjct: 243 PRITSEPQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQ 302

Query: 104 NGVRESDAGVYNCVAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
           N  +E+D GVY C+A+N  G A++  V +  +     P  V++P +     G SV + C 
Sbjct: 303 N-TQEADEGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEVLVGESVTLECS 361

Query: 162 PDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
             G PLP+I+W++ D      D    I  +G L + N+   DSG Y C ASN +    A 
Sbjct: 362 ATGHPLPQITWTRGDRTPLPIDPRVNITPSGGLYIQNVAQSDSGEYTCFASNSVDSIHAT 421

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
            ++ V  A P F   P S     G T    C  +GHP P + W   G+ L  D       
Sbjct: 422 AFIIVQ-ALPQFTVTPQSRVVIEGQTVDFQCAAKGHPQPVIAWTKGGSQLSVDRRHLVLS 480

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
            G  L ++GV   D G Y C A N  GS + VA + +     P     P DM    G++V
Sbjct: 481 SG-TLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDMTVEVGTNV 539

Query: 341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
           ++PC   GEP P I+W+KD  +  E     I   G L + ++G  D+G Y C A N +  
Sbjct: 540 QLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGTADAGRYECVARNTI-- 597

Query: 401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
               GY +V+   SV   P  SR      P VA   +      A   VD A+N+T   LF
Sbjct: 598 ----GYASVSMVLSVN-VPDVSRN---GDPYVATSIVE-----AIATVDRAINSTRTHLF 644

Query: 461 GYHSNEQQDHGSLMKLLRFP-DESARTVVRAADVYERTLSHIKKHIQAGVKMNLS 514
                   D   L+ L R+P D       RA +++ERTL  I++H+Q G+ ++L+
Sbjct: 645 DSRPRSPND---LLALFRYPRDPYTVGQARAGEIFERTLQLIQEHVQHGLMVDLN 696

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7

>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2

 Score =  213 bits (541), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 144/475 (30%), Positives = 219/475 (46%), Gaps = 27/475 (5%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL 103
           P     P     ++G+T   TC  EG+P P++ W  + N  S+ +D  +    DG +++ 
Sbjct: 246 PRITSEPQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQ 305

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAM-IRINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
           N  +E+D G+Y C+A+N  G  ++  + +R  G  A P  V++P +     G SV + C 
Sbjct: 306 N-TQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQPQNTEVLVGESVTLECS 364

Query: 162 PDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
             G P PRISW++ D      D    I  +G L + N+   DSG Y C+A+N +    A 
Sbjct: 365 ATGHPPPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQGDSGEYACSATNNIDSVHAT 424

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
            ++ V  A P F   P       G T    C  +G+P P + W   G+ L  D       
Sbjct: 425 AFIIVQ-ALPQFTVTPQDRVVIEGQTVDFQCEAKGNPPPVIAWTKGGSQLSVDRRHLVLS 483

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
            G  L ++GV   D G Y C A N  GS + VA + +     P     P D     G++V
Sbjct: 484 SG-TLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDTTVEVGANV 542

Query: 341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
           ++PC   GEP P I+W+KD  +  E     I   G L + ++GP D+G Y C A N +G 
Sbjct: 543 QLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGPADAGRYECVARNTIGS 602

Query: 401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
                 L+V         P  SR          D  +  ++  A   VD A+N+T   LF
Sbjct: 603 ASVSMVLSVN-------VPDVSRN--------GDPFVATSIVEAIATVDRAINSTRTHLF 647

Query: 461 GYHSNEQQDHGSLMKLLRFP-DESARTVVRAADVYERTLSHIKKHIQAGVKMNLS 514
                   D   L+ L R+P D       RA +++ERTL  I++H+Q G+ ++L+
Sbjct: 648 DSRPRSPND---LLALFRYPRDPYTVEQARAGEIFERTLQLIQEHVQHGLMVDLN 699

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|A4IGL7|PXDN_XENTR Peroxidasin OS=Xenopus tropicalis GN=pxdn PE=2 SV=1

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/475 (30%), Positives = 215/475 (45%), Gaps = 27/475 (5%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL 103
           P     P     + G+T   TC  EG+P P++ W  + N  S+  D  +   +DG +++ 
Sbjct: 236 PRITSEPQDVDVTFGNTVYFTCRAEGNPKPEIIWLRNNNELSMKDDSRLNLLNDGTLMIQ 295

Query: 104 NGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
           N  +E+D G+Y C+A+N  G  ++    +R  G  A P  V++P +     G SV + C 
Sbjct: 296 N-TKETDQGIYQCMAKNVAGEVKTHEVTLRYYGTPATPTFVIQPQNTEVLVGESVTLECS 354

Query: 162 PDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
             G+P PR++W++ D      D    I  +G L + N+   D+G Y C A+N +    + 
Sbjct: 355 ATGQPHPRVTWTRGDRTPLPSDPRINITPSGGLYIQNVNQDDAGEYTCFATNSVETIHST 414

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
            Y+ V   P  F   P       G T    C  +G+P P + W   GN L  D       
Sbjct: 415 AYIIVQAVPQ-FTVVPQDRNVFEGHTVDFHCEAQGNPKPVIAWTKGGNQLSVDRRHQVLS 473

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
            G + +L  V   D G Y C A N  GS  + A + +     P     P DM    G+ V
Sbjct: 474 SGTLRILR-VALHDQGQYECQAVNIVGSKSTAAQLIVQTRVTPVFATVPNDMTVEVGTDV 532

Query: 341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
           +IPC   G+PLP I+W+KD  +  E     I   G L + + G  D G Y C A N +G 
Sbjct: 533 QIPCSSQGDPLPIITWNKDGIQVTESGKFHISPHGYLAIRDAGLADQGRYECVARNPIGY 592

Query: 401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
                 L+V         P  SR      P VA   I      A   VD A+N+T   LF
Sbjct: 593 SSVSMVLSVL-------VPEVSR---TGDPFVATSIIE-----AIATVDRAINSTRTHLF 637

Query: 461 GYHSNEQQDHGSLMKLLRFP-DESARTVVRAADVYERTLSHIKKHIQAGVKMNLS 514
               +  +  G L+ L R+P D       RAA+++ERTL  I+ H+Q+G+ ++L+
Sbjct: 638 ---DSRPRSPGDLLALFRYPRDPYTVEQARAAEIFERTLQLIQDHVQSGLMVDLN 689

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9VZZ4|PXDN_DROME Peroxidasin OS=Drosophila melanogaster GN=Pxn PE=1 SV=1

 Score =  199 bits (505), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 146/524 (27%), Positives = 236/524 (45%), Gaps = 71/524 (13%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLV 102
           A P F+  P     + G    ++C V G P PQ+TW H+   L  ++    E      L+
Sbjct: 234 AKPQFLVAPQDAQVAAGEQVELSCEVTGLPRPQITWMHNTQELGLEEQAQAEILPSGSLL 293

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAM-IRINGHRAPRLVVKPFDMR-----APAGS-- 154
           +     SD G+Y C+A+N  G+  S  + + +NG   P  +  P D R     A AG+  
Sbjct: 294 IRSADTSDMGIYQCIARNEMGALRSQPVRLVVNGGNHP--LDSPIDARSNQVWADAGTPM 351

Query: 155 -------------------------------SVEIPCKPDGEPLPRISWSKDEAEFVEDR 183
                                           V + C   G P P I W  +  + ++  
Sbjct: 352 HGATPLPSPLPSPPHFTHQPHDQIVALHGSGHVLLDCAASGWPQPDIQWFVNGRQLLQST 411

Query: 184 -NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYS 242
            + ++   GSL L       +G YRC A N LG   A   + +   P I +  P S T  
Sbjct: 412 PSLQLQANGSLILLQPNQLSAGTYRCEARNSLGSVQATARIELKELPEI-LTAPQSQTIK 470

Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCV 301
            G    + C  +G+PLP + W  +G  L  +   +  E++   LV+   R+  AGVY C 
Sbjct: 471 LGKAFVLECDADGNPLPTIDWQLNGVPLPGNTPDLQLENENTELVVGAARQEHAGVYRCT 530

Query: 302 AQNSEGSAESVAMIRINGHRAP-RLVVKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKD 359
           A N  G     A I++   ++P +L ++P ++ A  G+++E+PC+ D  E   +ISW  D
Sbjct: 531 AHNENGETSVEATIKVERSQSPPQLAIEPSNLVAITGTTIELPCQADQPEDGLQISWRHD 590

Query: 360 ------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN 413
                   +  E   ++I   GSL + N+   D G Y C   N  G   A   +T+   N
Sbjct: 591 GRLIDPNVQLAE--KYQISGAGSLFVKNVTIPDGGRYECQLKNQFGRASASALVTI--RN 646

Query: 414 SVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQ-DHGS 472
           +V+ AP              D  + +A   A++E+D A+N T++ LF   S++   ++G 
Sbjct: 647 NVDLAP-------------GDRYVRIAFAEAAKEIDLAINNTLDMLFSNRSDKAPPNYGE 693

Query: 473 LMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSED 516
           L+++ RFP   AR + RAA++YERTL +I+KH+Q G  + +  +
Sbjct: 694 LLRVFRFPTGEARQLARAAEIYERTLVNIRKHVQEGDNLTMKSE 737

Plays a role in extracellular matrix consolidation, phagocytosis and defense.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3

 Score =  197 bits (501), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 212/482 (43%), Gaps = 30/482 (6%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLN 104
           P     P      +G+T   TC  EG+P P++ W H+ +SLD  DD      D   L++ 
Sbjct: 234 PRITFEPQDVEVPSGNTVYFTCRAEGNPKPEIIWIHNNHSLDLEDDTRLNVFDDGTLMIR 293

Query: 105 GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPCKP 162
             RESD GVY C+A+NS G A++  AM+R +   A P  V++P D     G+S  + C  
Sbjct: 294 NTRESDQGVYQCMARNSAGEAKTQSAMLRYSSLPAKPSFVIQPQDTEVLIGTSTTLECMA 353

Query: 163 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 222
            G P P I+W++D    ++   H    +G L L NI  +D G + C A+N  G   A   
Sbjct: 354 TGHPHPLITWTRDNGLELDGSRHVATSSG-LYLQNITQRDHGRFTCHANNSHGTVQAAAN 412

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
           + V  APP F   P              C  +G+P P + W   G  L  +   T    G
Sbjct: 413 IIVQ-APPQFTVTPKDQVVLEEHAVEWLCEADGNPPPVIVWTKTGGQLPVEGQHTVLSSG 471

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 342
             L ++   + D G Y C A +S G  +    + +           P D     G ++ I
Sbjct: 472 -TLRIDRAAQHDQGQYECQAVSSLGVKKVSVQLTVKPKALAVFTQLPQDTSVEVGKNINI 530

Query: 343 PCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
            C   GEP P I+W+K+  +  E     +   G+L +Y+ G  D G Y C A N  G  V
Sbjct: 531 SCHAQGEPQPIITWNKEGVQITESGKFHVDDEGTLTIYDAGFPDQGRYECVARNSFGLAV 590

Query: 403 AEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGY 462
              +LTVT     +                 DD +  ++  A + VD+A+N+T   LF  
Sbjct: 591 TNMFLTVTAIQGRQ---------------AGDDFVESSILDAVQRVDSAINSTRRHLFSQ 635

Query: 463 HSNEQQDHGSLMKLLRFP-DESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGK 521
             +   D   L+    +P D     + RA +++E TL  I++ ++ G+ ++L      GK
Sbjct: 636 KPHTSSD---LLAQFHYPRDPLIVEMARAGEIFEHTLQLIRERVKQGLTVDLE-----GK 687

Query: 522 AF 523
            F
Sbjct: 688 EF 689

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score =  179 bits (454), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 195/427 (45%), Gaps = 44/427 (10%)

Query: 5    RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST--GST 62
            R+   L +    +E  GRYSCVA N AG    D+ + V  PP     P ST + T  G  
Sbjct: 932  RADGSLHLDRALQEDAGRYSCVATNVAGSQHRDVELVVQVPPRI--HPTSTHHVTNEGVP 989

Query: 63   SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
            + + C+  G P P++TW  + N+L +  H +   +G  LV+      DAG Y C A NS 
Sbjct: 990  ASLPCIASGVPTPKITWTKETNALTTSGHYSVSRNG-TLVIVQPSPQDAGAYVCTATNSV 1048

Query: 123  G--------SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 174
            G        S  +  MI++NG +A   V  P  +   AG  V + C+  G P P ++W+K
Sbjct: 1049 GFSSQEMWLSVNTKPMIKMNGSQA---VDVPLRVTVKAGEEVTLDCEAQGSPTPLLTWTK 1105

Query: 175  DEAEFVEDRN-HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI 233
            D    +   N +++  +GSLRL      D+GLY CTASN  G   +  Y+     PP   
Sbjct: 1106 DANPLLPVTNRYELLPSGSLRLAQAQVGDNGLYGCTASNPAGA-TSRRYVLRVQVPPQVQ 1164

Query: 234  QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 293
              P       G    + C+ EG+P PQ+ WF DG +L  +      H         V+ S
Sbjct: 1165 PGPRVLKVLAGEALDLNCVAEGNPQPQLNWFKDGMALMGEGAQGSVH------FAAVKTS 1218

Query: 294  DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD---------MRAPAGSSVEIPC 344
            DAG+Y C A NS G+         +  +   LV++P           +   AG +  +PC
Sbjct: 1219 DAGLYRCEASNSAGT---------DTWKLELLVLEPPHWGTDETKSLLERVAGENASLPC 1269

Query: 345  KPDGEPLPRISWSKD-EAEFVEDR-NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
               G P PRI+W +   +E +  R +  +   GSL L ++   DSG Y C A+N +G   
Sbjct: 1270 PAQGTPKPRITWRRGPSSEPLNGRPDVAVLDEGSLFLSSVSLADSGEYECQATNEVGSAS 1329

Query: 403  AEGYLTV 409
                L V
Sbjct: 1330 RRAKLVV 1336

Mus musculus (taxid: 10090)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score =  179 bits (453), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 182/405 (44%), Gaps = 8/405 (1%)

Query: 9    ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
            +L I+    E  G Y C+A N AG   G   + V  PP+        + + GS + + C 
Sbjct: 4001 QLRIAHASPEDAGNYLCIAKNSAGSAMGKTRLVVQVPPVIENGLPDLSTTEGSHAFLPCK 4060

Query: 69   VEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127
              G P P +TW  DG  +  ++   T +  G +LV N +   DAG Y C A+N+ G A  
Sbjct: 4061 ARGSPEPNITWDKDGQPVSGAEGKFTIQPSGELLVKN-LEGQDAGTYTCTAENAVGRARR 4119

Query: 128  VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI 187
               + I     P     P D     G  + + C   G P PRI W+ ++    E  + + 
Sbjct: 4120 RVHLTI--LVLPVFTTLPGDRSLRLGDRLWLRCAARGSPTPRIGWTVNDRPVTEGVSEQ- 4176

Query: 188  HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTS 247
                +L+   +  +DSG Y C A N +G   A  ++ V  AP +  +         G + 
Sbjct: 4177 DGGSTLQRAAVSREDSGTYVCWAENRVGRTQAVSFVHVKEAPVLQGEAFSYLVEPVGGSI 4236

Query: 248  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
            ++ C+V G P+P + W  DG  L    H+ ++     L ++     DAG Y C+A+N  G
Sbjct: 4237 QLDCVVRGDPVPDIHWIKDGLPLRGS-HLRHQLQNGSLTIHRTERDDAGRYQCLAENEMG 4295

Query: 308  SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 367
             A+ V ++ +    AP   V+P DM   +G  V + C+  GEP P I W +        R
Sbjct: 4296 VAKKVVILVL--QSAPVFQVEPQDMTVRSGDDVALRCQATGEPTPTIEWLQAGQPLRASR 4353

Query: 368  NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
              +    GSL L N+   D+G Y C A NLLG   A  +L V GE
Sbjct: 4354 RLRTLPDGSLWLENVETGDAGTYDCVAHNLLGSATARAFLVVRGE 4398

Homo sapiens (taxid: 9606)

>sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2

 Score =  170 bits (430), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 222/505 (43%), Gaps = 46/505 (9%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------ 98
           PP  ++ P     S G  + + C  EG P P + W+ DG  +++D      H        
Sbjct: 30  PPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGS 89

Query: 99  --FVLVLNGVR-ESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMR 149
             F+ +++G R + D G Y CVA+N  G A S      VA++R +  +       P D+ 
Sbjct: 90  LFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQ------NPTDVV 143

Query: 150 APAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYR 207
             AG    + C+P  G P P I W KD+   ++D+  +I  R G L + N    D+G+Y 
Sbjct: 144 VAAGEPAILECQPPRGHPEPTIYWKKDKVR-IDDKEERISIRGGKLMISNTRKSDAGMYT 202

Query: 208 CTASNLLGE-DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD 266
           C  +N++GE D     LTV    P F++RP++            C V+G P P + W  D
Sbjct: 203 CVGTNMVGERDSDPAELTVFER-PTFLRRPINQVVLEEEAVEFRCQVQGDPQPTVRWKKD 261

Query: 267 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLV 326
              L    +     D + L +     +D G Y C+A+N  G  E+ A + +     P+ V
Sbjct: 262 DADLPRGRYDI--KDDYTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVRA--PPQFV 317

Query: 327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLR 378
           V+P D     G +V  PC+  G P P + W K+ ++ +   N          +  TG L 
Sbjct: 318 VRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLT 377

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIH 438
           + NI   D+G Y C A  + G  +A+  L VT   +  P P   + P A++    D T  
Sbjct: 378 ITNIQRSDAGYYICQALTVAGSILAKAQLEVTDVLTDRPPPIILQGP-ANQTLAVDGTAL 436

Query: 439 MAVKLASREVDAAVNATINSLFGYHSNEQ----QDHGSL-MKLLRFPDESARTVVRAADV 493
           +  K     +   V + +   F +   +     Q+ G+L +K LR  D    T V  +  
Sbjct: 437 LKCKATGDPL--PVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS 494

Query: 494 YERTLSHIKKHIQAGVKMNLSEDLS 518
            E + S +    ++G  ++ + DLS
Sbjct: 495 GETSWSAVLDVTESGATISKNYDLS 519

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Homo sapiens (taxid: 9606)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 187/407 (45%), Gaps = 12/407 (2%)

Query: 6    SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
            SS  + I   Q  H GRY+CVA N AG     + + V+ PP+   +P        +   +
Sbjct: 3948 SSGAIEILATQLNHAGRYTCVARNAAGSAHRHVTLHVHEPPVIQPQPSELHVILNNPILL 4007

Query: 66   TCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
             C   G P P +TW  +G ++++   +H      G   +   VRE DAG Y CVAQN  G
Sbjct: 4008 PCEATGTPSPFITWQKEGINVNTSGRNHAVLPSGGL-QISRAVRE-DAGTYMCVAQNPAG 4065

Query: 124  SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 183
            +A  +  I++N    P +     +        + + C+ DG P P I+W KD    VE  
Sbjct: 4066 TA--LGKIKLNVQVPPVISPHLKEYVIAVDKPITLSCEADGLPPPDITWHKDGRAIVESI 4123

Query: 184  NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST 243
              ++  +GSL++  + P D+G Y C A+N+ G       LTV   PP         T + 
Sbjct: 4124 RQRVLSSGSLQIAFVQPGDAGHYTCMAANVAGSSSTSTKLTVH-VPPRIRSTEGHYTVNE 4182

Query: 244  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-VLVLNGVRESDAGVYNCVA 302
             S + + C+ +G P P + W  D N L ++    Y  + +  L+L  V   D+G Y CVA
Sbjct: 4183 NSQAILPCVADGIPTPAINWKKD-NVLLANLLGKYTAEPYGELILENVVLEDSGFYTCVA 4241

Query: 303  QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
             N+ G  E    + +  H  P     P D+    G  + + CK  G PLP+++W+ +   
Sbjct: 4242 NNAAG--EDTHTVSLTVHVLPTFTELPGDVSLNKGEQLRLSCKATGIPLPKLTWTFNN-N 4298

Query: 363  FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             +      ++    L +  +  +DSG Y CTA N +G   A G++ V
Sbjct: 4299 IIPAHFDSVNGHSELVIERVSKEDSGTYVCTAENSVGFVKAIGFVYV 4345

Homo sapiens (taxid: 9606)

>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2

 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 222/507 (43%), Gaps = 46/507 (9%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------ 98
           PP  ++ P     S G  + + C  EG P P + W+ DG  +++D      H        
Sbjct: 30  PPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGS 89

Query: 99  --FVLVLNGVR-ESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMR 149
             F+ +++G R + D G Y CVA+N  G A S      VA++R +  +       P D+ 
Sbjct: 90  LFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQ------NPTDVV 143

Query: 150 APAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYR 207
             AG    + C+P  G P P I W KD+   ++D+  +I  R G L + N    D+G+Y 
Sbjct: 144 VAAGEPAILECQPPRGHPEPTIYWKKDKVR-IDDKEERISIRGGKLMISNTRKSDAGMYT 202

Query: 208 CTASNLLGE-DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD 266
           C  +N++GE D     LTV    P F++RP++            C V+G P P + W  D
Sbjct: 203 CVGTNMVGERDSDPAELTVFER-PTFLRRPINQVVLEEEAVEFRCQVQGDPQPTVRWKKD 261

Query: 267 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA--MIRINGHRAPR 324
              L    +     D + L +     +D G Y C+A+N  G  E+ A   +R+     P+
Sbjct: 262 DADLPRGRYDI--KDDYTLRIKKAMSTDEGTYVCIAENRVGKVEASATLTVRVRPVAPPQ 319

Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGS 376
            VV+P D     G +V  PC+  G P P + W K+ ++ +   N          +  TG 
Sbjct: 320 FVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGD 379

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDT 436
           L + NI   D+G Y C A  + G  +A+  L VT   +  P P   + P     +V D T
Sbjct: 380 LTITNIQRSDAGYYICQALTVAGSILAKAQLEVTDVLTDRPPPIILQGPINQTLAV-DGT 438

Query: 437 IHMAVKLASREVDAAVNATINSLFGYHSNEQ----QDHGSL-MKLLRFPDESARTVVRAA 491
             +  K     +   V + +   F +   +     QD G+L +K LR  D    T V  +
Sbjct: 439 ALLKCKATGEPL--PVISWLKEGFTFLGRDPRATIQDQGTLQIKNLRISDTGTYTCVATS 496

Query: 492 DVYERTLSHIKKHIQAGVKMNLSEDLS 518
              E + S +    ++G  ++ + D++
Sbjct: 497 SSGETSWSAVLDVTESGATISKNYDMN 523

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	940
91094043	1388	PREDICTED: similar to peroxidasin [Tribo	0.510	0.345	0.332	3e-72
241709529	1111	peroxidase, putative [Ixodes scapularis]	0.484	0.409	0.346	5e-70
242022412	1266	Thyroid peroxidase precursor, putative [	0.496	0.368	0.338	1e-68
390356749	1520	PREDICTED: LOW QUALITY PROTEIN: peroxida	0.515	0.319	0.315	5e-65
158286012	1514	AGAP007237-PA [Anopheles gambiae str. PE	0.494	0.307	0.313	3e-63
157129964	1255	peroxidasin [Aedes aegypti]	0.477	0.357	0.322	2e-61
198421541	1642	PREDICTED: similar to peroxidasin homolo	0.677	0.387	0.275	4e-58
149728202	1431	PREDICTED: peroxidasin homolog [Equus ca	0.476	0.313	0.311	8e-57
357616353	1250	putative peroxidasin [Danaus plexippus]	0.486	0.365	0.299	5e-55
355565434	1487	hypothetical protein EGK_05020 [Macaca m	0.6	0.379	0.270	1e-54

>gi|91094043|ref|XP_968570.1| PREDICTED: similar to peroxidasin [Tribolium castaneum] gi|270004795|gb|EFA01243.1| peroxidasin [Tribolium castaneum]

 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 260/512 (50%), Gaps = 32/512 (6%)

Query: 28  GNP-AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL 86
           G P  G+   D H      P  ++ P     S GST+  TC V G P P + W  D   +
Sbjct: 218 GKPLKGMTTRDFHCKA---PEIMEGPQDVEISWGSTAVFTCRVTGDPKPSIYWMRDDKEI 274

Query: 87  DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES--VAMIRIN-------GHR 137
           + ++      D   LV+    ESD+G Y C+A+N +G  +S    MI +        G+ 
Sbjct: 275 EMNNDKYDIMDNGSLVIKHTDESDSGHYECMAKNEDGEVKSRPARMILVRPDQQFRGGNG 334

Query: 138 APRLVVKPFDMR-APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 196
           +P  +V P  +  + +  SV + CK  G P P I+WS++  +    + H I   G+L + 
Sbjct: 335 SPVFLVTPVSVTTSESDPSVSLHCKAFGNPHPTITWSRNGIQLTTSQRHFIDEDGTLVIR 394

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH 256
            +   D G YRC A+N  G   +E  + V  AP +F   P +T  + GST ++ C   G 
Sbjct: 395 PVKASDHGTYRCDATNSNGRISSEADVIVNVAP-VFTVHPQNTETTPGSTIKLECFAVGS 453

Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
           P P++TWF D   + SD  ++   DG  L ++  +E+D+G+Y C A+N  G  E  A ++
Sbjct: 454 PPPEITWFKDDLEVRSDGRLSISPDGSSLQIHNAKETDSGLYICEARNHLGFREVSAKVK 513

Query: 317 IN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
           +     + P+ + KP+++ A  GS++E+PCK DG+P P I W KD A        K+   
Sbjct: 514 VTPLARKPPKFIYKPYNIEALVGSTIELPCKADGDPTPGIQWQKDGASLQRTGRTKVSLI 573

Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVAD 434
           G+L +Y + P D G Y C A N  G   A  Y+TV  EN            + +   + D
Sbjct: 574 GNLYIYGVVPDDQGRYECAAINDFGRSTASCYVTVK-ENQ-----------NPTDFGIGD 621

Query: 435 DTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVY 494
             + +A   AS EVD A+N TI++LF  H+        L +L+RFPD  AR + RAA+VY
Sbjct: 622 KFVKIAFDEASHEVDKAINKTIDNLF--HNKGPHSSADLFRLVRFPDAPARELARAAEVY 679

Query: 495 ERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSP 526
           ERTL +I+KH++ G+ MN S + +  +   SP
Sbjct: 680 ERTLVNIRKHVERGMTMNASSNFNY-REILSP 710

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241709529|ref|XP_002413386.1| peroxidase, putative [Ixodes scapularis] gi|215507200|gb|EEC16694.1| peroxidase, putative [Ixodes scapularis]

 Score =  272 bits (696), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 241/476 (50%), Gaps = 21/476 (4%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL 103
           P   + P     + G     +C  EG P P +TW HDG+  S D D+ V    DG  LV+
Sbjct: 39  PSLTEEPYDVEAAFGVKVNFSCKAEGEPRPSITWQHDGDEVSTDQDNRVEILDDG-TLVI 97

Query: 104 NGVRESDAGVYNCVAQNSEGSAES-VAMIRING-HRAPRLVVKPFDMRAPAGSSVEIPCK 161
           +  R  D G Y C A+N+ G   S  A +R      +PR+V KP D+   AG SV + C+
Sbjct: 98  HSSRIEDIGTYKCRAENAAGHVVSRTAYLRFTSPTLSPRIVTKPSDVSVTAGRSVTMRCQ 157

Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHRT-GSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
             G P P+++W++D     ++  + + RT G+L +      DSG Y CTAS+LLGE+ A 
Sbjct: 158 AAGRPTPQVTWTRDGLPLFQNPRYHVSRTAGTLIITATDLSDSGKYMCTASSLLGEESAA 217

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYE 279
             L V  AP  FI+ P       G      C   G P PQ++W+ DG  L +D  HV   
Sbjct: 218 AVLRVELAP-YFIESPREQDVLEGDNVEFICHAGGFPAPQLSWYKDGQRLKADGVHVKNL 276

Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 339
           H G V+ L  VR  + GVY C AQNS G AES A + ++    P L+  P +  A  GS+
Sbjct: 277 HGGKVIKLYDVRRQEQGVYTCHAQNSLGYAESHADLLVSSKAMPHLMTAPSNTEADQGST 336

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
           VE+ C  +G P P +SW ++     +    KI R GSL +  + P+D G Y C   N +G
Sbjct: 337 VEVFCVAEGHPTPTVSWRREGKVIGDTPRRKITRDGSLVVIGLRPEDEGQYECVVENEMG 396

Query: 400 EDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSL 459
           + V   Y+ V  +   E  PH             D     A++ A   VD A+N+T+ +L
Sbjct: 397 QLVTPFYILVR-DTIAEGQPHP-----------GDRYFLSALQEAEESVDKAINSTLQNL 444

Query: 460 FGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSE 515
               S+   +H  L+++ R+PD  A+   RAA+++ER L  I++ + +G K NLS+
Sbjct: 445 LN-SSSSGHNHHQLLRIFRYPDSEAQRTARAAEIFERALGLIQEQVSSGAKFNLSQ 499

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022412|ref|XP_002431634.1| Thyroid peroxidase precursor, putative [Pediculus humanus corporis] gi|212516942|gb|EEB18896.1| Thyroid peroxidase precursor, putative [Pediculus humanus corporis]

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/494 (33%), Positives = 257/494 (52%), Gaps = 27/494 (5%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 105
           P  ++ P     S G ++   C V+G P P++ W  + N ++++D          L++  
Sbjct: 19  PEIVEEPRDVEVSFGGSASFHCKVDGDPAPEVIWLRNSNEINANDGRHSILKDGTLMIES 78

Query: 106 VRESDAGVYNCVAQNSEGSAESVAM----IRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
             + D G Y CVA++  G  +S  +    +R      P     P D  A  G +V++ C 
Sbjct: 79  TLDEDLGTYECVAKSPLGQIKSKQVRMDKVRTTREGKPHFERTPLDWSANIGDTVQLVCS 138

Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 221
            +G+P P ISW   E+       ++I   G L ++N  PQD+G+YRCTA+N LG   +  
Sbjct: 139 ANGDPRPHISWYFGESHLSNSHKYRIEDNGVLIIFNAQPQDAGIYRCTAANSLGVISSVS 198

Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD 281
            L V  A P F   P + T  +G  + + C  +G P+P ++W+  G  L +    TY   
Sbjct: 199 RLRVNVA-PTFSTHPENLTLKSGEMAELVCAADGEPVPSISWYKGGRLLATGGR-TYVL- 255

Query: 282 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA---PRLVVKPFDMRAPAGS 338
           G  L +  V+ESD+G+Y C A N  G AE+ A I +  +R    P+ +  P+++  PAGS
Sbjct: 256 GQKLRIEHVKESDSGLYVCRADNRAGQAETTARILVKDYRERLPPKFIHTPYNLDVPAGS 315

Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRTGSLRLYNIGPQDSGLYRCTASNL 397
           ++EIPCK DGEP P + W KD     E + H ++   GSL ++++  QD+G Y C+A N 
Sbjct: 316 TIEIPCKADGEPAPVMVWRKDGNVISESKGHYRLSSHGSLYIHSVSFQDAGTYECSAVND 375

Query: 398 LGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATIN 457
            G+ VA G L V G    +P P           S  D  +  A + ASR++D AV+ T+ 
Sbjct: 376 FGKVVANGVLKVKG----KPQP----------ASPGDKFVQKAFEEASRDIDHAVDNTLK 421

Query: 458 SLFGYHSN-EQQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSED 516
           +      N      G LM+L+RFP+ +AR V RAA+VYERTL  I+KH+++G+K+   +D
Sbjct: 422 TFVHRPRNGPPLSAGELMRLVRFPNAAARQVARAAEVYERTLYLIRKHVESGMKVKPEKD 481

Query: 517 LSLGKAFFSPWRLV 530
            S  K   SP +L 
Sbjct: 482 FSY-KDILSPEKLT 494

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390356749|ref|XP_797821.3| PREDICTED: LOW QUALITY PROTEIN: peroxidasin homolog [Strongylocentrotus purpuratus]

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 163/516 (31%), Positives = 250/516 (48%), Gaps = 31/516 (6%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGD----LHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
           L+I     +  G+Y C+A N  G  +       +      P F+  P +   + G+    
Sbjct: 304 LMIQNASGDDEGQYECMARNALGEVKTQPVSLRYFGAPKRPHFVVEPHNVDATEGNNVYF 363

Query: 66  TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH----DGFVLVLNGVRESDAGVYNCVAQNS 121
           +C   G P P++ W HD   +  +  + +++    DG +++ N   + D G Y C+A+N+
Sbjct: 364 SCRAMGDPEPEIVWLHDSKEILPNRGIDHKYNILDDGTLMIQNASGD-DEGQYECMARNA 422

Query: 122 EGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 179
            G  ++  V++      RAP     P D+     +S  I C  +G PLPRISW+K+ A  
Sbjct: 423 LGEVKTQPVSLRYFGAPRAPVFTFVPEDVEFRESTSAVIHCAANGYPLPRISWTKEGANV 482

Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
           VE+   +I  TGSL + N    D+G YRC A+N L    A   L+V   PP F   P   
Sbjct: 483 VENTRFRILSTGSLHISNTHFSDAGDYRCDATNSLDTLSATATLSVL-VPPTFELAPQPQ 541

Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 299
           +   GST  + C  +G+PLP + W  D  SL  D        G + ++  V + DAG Y 
Sbjct: 542 SAIEGSTVELHCRPQGYPLPVIQWRKDSTSLPDDRKFLILASGTLRIIR-VSQEDAGNYE 600

Query: 300 CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
           C+A N  G  +S+A + I     P     P D+   AG+++ +PC   G+P P I+W+KD
Sbjct: 601 CIAVNKAGQRQSMAQVEIRARVPPVFNQSPSDLTVVAGATIRLPCSASGDPEPLITWTKD 660

Query: 360 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
             +  E     I   G L ++++G  D G Y C A N +      GY +   E +V  + 
Sbjct: 661 GVQITESAKFSISEAGHLAIHDVGVDDDGRYECAARNTI------GYASTDMELTVNVSI 714

Query: 420 HTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF-GYHSNEQQDHGSLMKLLR 478
            TSRE         D  ++ A+  A R +DAA+N T  +L  G       D   L+ L R
Sbjct: 715 GTSRE--------GDSFVNSAIAEAIRNIDAAINETNRNLLDGKKPRTPHD---LLTLFR 763

Query: 479 FPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLS 514
           FP   A ++ RAA+V+ERTL  I  HI+AG+++NL+
Sbjct: 764 FPSIEAMSIARAAEVFERTLELIHNHIEAGMQVNLT 799

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|158286012|ref|XP_308561.4| AGAP007237-PA [Anopheles gambiae str. PEST] gi|157020264|gb|EAA04206.4| AGAP007237-PA [Anopheles gambiae str. PEST]

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 241/497 (48%), Gaps = 32/497 (6%)

Query: 26  VAGNP-AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN 84
           + G P + +   D H    A P  + +P     S G T+  +C   G P P++ W  +G+
Sbjct: 207 LEGQPISSITEEDFHC---AKPEIVVQPRDIEISYGQTAVFSCKASGDPRPEIVWLQEGS 263

Query: 85  SL--DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGH----- 136
            +  +SD  +T   DG  L ++ +  +DAG Y C+A+NS G + S  A + +N       
Sbjct: 264 PIRSESDGRITLLPDG-SLRIDEIVPADAGQYACIARNSLGESRSRTASLAVNNEVVESE 322

Query: 137 -RAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
             AP+ +  P D +    G  + + C   G P P I W K   E +++   K+   GSL 
Sbjct: 323 AEAPKFLRTPADPLELLEGEPIVLDCVVTGAPTPSILW-KFNNENIQNGRIKLFGNGSLI 381

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
           L      D G+Y C A N LG +++     +  APP  +  P +     GST  + C  +
Sbjct: 382 LPTSTLDDGGIYTCCAGNALG-NISVNVTVLVNAPPRIVLGPENQNVKVGSTLTLECEAD 440

Query: 255 GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
           G+PLP + W  DG  ++    V +  D   L ++   ESD+G Y CVA+N  G AE  A 
Sbjct: 441 GNPLPHIWWKKDGLPVNETSQVYFTDDAIELTIDHAEESDSGTYVCVAENELGIAEVEAE 500

Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
           + +     PR + +P+D+ A  G++VE+PCK + + + +I W K+         ++I   
Sbjct: 501 VVVINVGPPRFLFEPYDLDAIEGTTVEMPCKAENDDILQIKWQKEGRTITPKDKYRISSA 560

Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVAD 434
           GSL + NI   D G Y C+  N  G   A G LTV  +    P                D
Sbjct: 561 GSLFIANITLTDEGRYECSLLNKYGRATASGMLTVKKKAEALP---------------GD 605

Query: 435 DTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVY 494
             + +A+  ASREVD A+N TI  +F    N  + H  L +++RFP   AR + RAA+VY
Sbjct: 606 QYVRIAIAEASREVDMAINQTIGRMFSTGRNTTRYHDDLFRIVRFPTGPAREIARAAEVY 665

Query: 495 ERTLSHIKKHIQAGVKM 511
           ER L  I+KH+++G  +
Sbjct: 666 ERALVIIRKHVESGANL 682

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157129964|ref|XP_001655492.1| peroxidasin [Aedes aegypti]

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 232/478 (48%), Gaps = 29/478 (6%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLN 104
           P  +  P     S G T+  +C   G P P++ W  + N + SDD  +    DG  L ++
Sbjct: 2   PEIVTEPRDIEISYGQTAVFSCKAVGDPRPEIVWMLNANEIHSDDTRINVLPDG-SLRID 60

Query: 105 GVRESDAGVYNCVAQNSEGSAES-VAMIRINGH------RAPRLV-VKPFDMRAPAGSSV 156
            V   DAG Y C+A+N+ G   S  A + +N         AP+ +   P ++    G  +
Sbjct: 61  EVTAIDAGHYECMAKNNMGEVHSRQAQMIVNNEVIETEAEAPKFIQTPPAEVDLLEGQPL 120

Query: 157 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216
            + C   G P P I W K   + +++   K+   GSL L      + G+Y C A N +G 
Sbjct: 121 VLHCVVSGAPTPSILW-KFNNQNIQNGRIKLFGNGSLILPVASLDNGGVYSCYAGNAIG- 178

Query: 217 DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
           +V+        APP F   P S T  TG+   + C  +G+PLP + W  DG  L   + +
Sbjct: 179 NVSVNATVHVNAPPHFTLAPESITTKTGTRVTLECEADGNPLPHIWWKRDGQPLSETNRI 238

Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA-MIRINGHRAPRLVVKPFDMRAP 335
               D   L +  V+ESDAG Y CVA+N  GS E+ A +  IN    P  + +P+D+ A 
Sbjct: 239 YLSDDDIELTIEHVKESDAGSYTCVAENELGSVEATAELAVINDVGPPSFLFEPYDLEAI 298

Query: 336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
            G+++E+PCK + + + +  W KD     +   +++   GSL + N+   D G Y C+  
Sbjct: 299 EGTTIELPCKAEDDDIMQTKWRKDGRTITQTEKYRLSLAGSLFISNLTEADQGRYECSLL 358

Query: 396 NLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNAT 455
           N  G   A G LTV  +  + P                D  + +A+  ASREVD A+N T
Sbjct: 359 NQYGRATASGLLTVKKKLELLP---------------GDQFVRIAIAEASREVDLAINQT 403

Query: 456 INSLFGYHSNE-QQDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMN 512
           I  LF    N  QQ HG L +++RFP   AR + RAA+VYER L +I+KH+  G  ++
Sbjct: 404 IAKLFSVGGNRTQQHHGDLFRIVRFPTGPARELARAAEVYERALVNIRKHVNTGRNLS 461

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198421541|ref|XP_002121550.1| PREDICTED: similar to peroxidasin homolog [Ciona intestinalis]

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 201/729 (27%), Positives = 303/729 (41%), Gaps = 92/729 (12%)

Query: 5   RSSTE--LVISGVQREHGGRYSCVAGNPAG---------VYRGDLHVTVNAPPIFIQRPV 53
           R ST+  LVI   ++   G Y C A N  G          YRG        PP+F   P 
Sbjct: 296 RKSTDGSLVIQTSRQSDRGIYKCTADNTVGHRSSSVARLTYRG-----AQGPPVFTTVPS 350

Query: 54  STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
           +            C   G P P   W+H+   L    +      G + + +   E++ G 
Sbjct: 351 NKEVILNGRVTFQCRSTGTPEPVTRWYHNHERLPVTPNFIV-MPGTLHIRSASIENN-GT 408

Query: 114 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
           Y C+A NSEG   S A + +     P+  VKP D  A  G SV + C  +G P P +SW 
Sbjct: 409 YTCMAANSEGFINSSATLIVRN--PPKFTVKPQDQTAIQGRSVTLDCHAEGIPEPTLSWL 466

Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI 233
           ++      D+ + +  +GSL +  + P D G Y C A +  G   ++ ++T+   PP F 
Sbjct: 467 RNGHTLNRDQRYLVMTSGSLLIRGVNPGDEGTYTCKAESNAGVSTSDAFVTIM-VPPRFT 525

Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 293
            RP +     G T    C V G P PQ+ W  +G ++  D   +    G + +L    E 
Sbjct: 526 VRPQNQRVRQGLTVDFQCQVAGRPQPQIVWTINGRAVPDDPRYSLLPSGTLRLLRAQPE- 584

Query: 294 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG----- 348
            AG Y C A N+ G+  +   + +        V  P D    AG+ V I C   G     
Sbjct: 585 HAGNYRCEAANAVGAQHAQVSLTVIPPTPLSFVRTPEDQTVDAGTDVTIRCHVTGGGVDD 644

Query: 349 EPLPRISWSKDEAEFVEDRNHKIHRTG--SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
           E  P I W+KD           I R+    L +  +   D+G Y C A +  G D     
Sbjct: 645 ETAPNIYWTKDNVRLTTSGRFSISRSSLSELLIRQVARDDTGRYECVARS--GSDFISAS 702

Query: 407 LTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNE 466
           +T+                   + +V D  + +A  L +  +       ++       +E
Sbjct: 703 MTLVVN---------------LRNTVKDIVVKLAQILPADCLLHGCPDELDQSSHSSHDE 747

Query: 467 QQDHGSLMKLLR--FPDESAR----TVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLG 520
           +Q   SL +LL   F   ++R    +VV  +++Y+ T+      +  G+  N  +  + G
Sbjct: 748 EQSPLSLDELLNQHFLASASRQKRQSVVHLSELYD-TIQSATNEVNRGIN-NSIQHFNNG 805

Query: 521 KAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAMNI 580
           +   SP  L+            +  P+ R         E+ D        V+L +    +
Sbjct: 806 RNRQSPGDLL----------ALVRFPSTRAGVDLARAAEVFD--------VALRMIECCV 847

Query: 581 QRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPR 640
           +RG                  R   F+   R   DR+  D    L G        ++   
Sbjct: 848 RRGM-----------------RPRDFD--VRHTKDRQEGDGPASLDGDEEMDVMSLIGSE 888

Query: 641 QIELIANLSGCMEHQRTANCS-DLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIY 699
            +EL+ANLSGC  H+   +CS D+CFH KYR+ DGTCNNL HPMWGASLT F RLL+PIY
Sbjct: 889 AVELVANLSGCSAHRPNIDCSRDICFHRKYRSPDGTCNNLHHPMWGASLTPFHRLLQPIY 948

Query: 700 ENGFSTPVA 708
           ENGF+ P++
Sbjct: 949 ENGFNAPIS 957

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149728202|ref|XP_001503092.1| PREDICTED: peroxidasin homolog [Equus caballus]

 Score =  228 bits (582), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 148/475 (31%), Positives = 226/475 (47%), Gaps = 27/475 (5%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL 103
           P     P     ++G+T   TC  EG+P P++ W  + N  S+ +D  +    DG +++ 
Sbjct: 198 PRITSEPQDADVTSGNTVFFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQ 257

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAM-IRINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
           N  +E+D G+Y C+A+N  G  ++  + +R  G  A P  V++P +     G SV + C 
Sbjct: 258 N-TQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPAFVIQPQNTEVLVGESVTLECS 316

Query: 162 PDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
             G P+PRI+W+K D+    ED   ++  +G L + N+  +DSG Y CTASN +G   A 
Sbjct: 317 ATGHPVPRITWTKGDQTPVPEDPRVRVTPSGGLYIQNVAQEDSGEYACTASNSIGSIHAT 376

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
            ++ V  A P F   P       G T    C  +G+P P + W   G+ L  D       
Sbjct: 377 AFIIVQ-ALPQFTVTPQDRAVIEGQTVDFQCEAKGYPQPVIAWTKGGSQLSVDRRHLVLS 435

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
            G  L ++GV   D G Y C A N  GS   VA + +     P     P DM    GS+V
Sbjct: 436 SG-TLRISGVALHDQGQYECQAVNIIGSQRVVAHLTVQPRVTPVFASIPSDMTVEVGSNV 494

Query: 341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
           ++PC   GEP P I+W+KD  +  E     I   G L ++++G  D+G Y C A N +G+
Sbjct: 495 QLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTIHDVGTADAGRYECVARNTIGQ 554

Query: 401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
                 L+V         P  SR          D  +  ++  A   VD A+N+T   LF
Sbjct: 555 ASVSMVLSVN-------VPDVSRN--------GDPFVATSIVEAIATVDRAINSTRTHLF 599

Query: 461 GYHSNEQQDHGSLMKLLRFP-DESARTVVRAADVYERTLSHIKKHIQAGVKMNLS 514
                   D   L+ L R+P D       RA +++ERTL  I++H+Q G+ ++L+
Sbjct: 600 DSRPRSPND---LLALFRYPRDPYTVEQARAGEIFERTLQLIQEHVQHGLMVDLN 651

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357616353|gb|EHJ70149.1| putative peroxidasin [Danaus plexippus]

 Score =  223 bits (567), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 235/494 (47%), Gaps = 37/494 (7%)

Query: 31  AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 90
           A +   D H      P  +  P     + G  +  TC+  G P P++ WF D  +L  DD
Sbjct: 99  AAMQEKDFHCR---QPEIMSDPEDVVVNFGDEAIFTCMASGEPAPEIVWFRDSAAL-PDD 154

Query: 91  HVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV---AMIRINGHRAPRLVVKPF 146
              YE  D   L+++   E+D GV+ C A+N  G A S     M++        +    F
Sbjct: 155 TSRYEIMDNGTLMVHHADENDIGVFECSAKNPAGEARSKPARMMLQTKPDNNGAITFPVF 214

Query: 147 DMRAPAGSSVEI-------PCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG 199
            +  P  S V I        C   G P P ISW  +    +      +H  GS+ + NI 
Sbjct: 215 TI-LPRKSVVNINQPYARFDCVAKGNPKPHISWYFNGERILLTDRITMHHNGSIVIENIK 273

Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
            +D+G Y C A N+ G+  A   L V  AP  FI  P   T + G ++   C   G P P
Sbjct: 274 YEDTGSYTCQAENVNGKITASVTLEVMVAPA-FIIVPKDQTVTIGDSAHFRCTARGTPTP 332

Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
            + W+ +  SL   +++ +  +   L +    E DAG+Y+C A+NSEG  E  A+++I  
Sbjct: 333 IIKWYRNTMSLPPSENIVFSDNDQNLTIVETSEDDAGLYHCRAENSEGLTEISAVLKIES 392

Query: 320 HRA--PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 377
                P++ +KP D  A   ++V++PC+ + +P   + W KD +  + +    I   GSL
Sbjct: 393 FEIIPPKITLKPEDTDAFKETTVQLPCEYESDPPALVEWRKDGSRIITNDRISISLIGSL 452

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTI 437
            + N+   D+G Y C+  N  G D A  +LTV  ++ + P                D+ +
Sbjct: 453 IINNVSITDTGSYECSVHNEHGRDTASSFLTV--KDHILP---------------GDEYV 495

Query: 438 HMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERT 497
           ++A+  A R+VD A+  +I++LF   S+       L ++ RFP+  AR V RAA++YERT
Sbjct: 496 NIAITEAIRDVDQAIAKSIDNLFNNKSS-NISFQDLYRITRFPNAPAREVARAAEIYERT 554

Query: 498 LSHIKKHIQAGVKM 511
           L  +K  IQ+G+K+
Sbjct: 555 LDKVKGFIQSGLKI 568

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|355565434|gb|EHH21863.1| hypothetical protein EGK_05020 [Macaca mulatta]

 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 195/722 (27%), Positives = 286/722 (39%), Gaps = 158/722 (21%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL 103
           P     P     ++G+T   TC  EG+P P++ W  + N  S+ +D  +    DG +++ 
Sbjct: 162 PRITSEPQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQ 221

Query: 104 NGVRESDAGVYNCVAQNSEGSAES--------------------VAMI-RINGHRAPRL- 141
           N  +E+D G+Y C+A+N  G  ++                    +A+I  ING+R  R+ 
Sbjct: 222 N-TQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPGHYGYKTFCLAIIATINGYRRLRIP 280

Query: 142 -----------------------------------VVKPFDMRAPAGSSVEIPCKPDGEP 166
                                              + KP +     G SV + C   G P
Sbjct: 281 GSHISVQRKAQWYSTADSKPSIKQRSTCSAQGVQHLSKPQNTEVLVGESVTLECSATGHP 340

Query: 167 LPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            PRISW++ D      D    I  +G L + N+  +DSG Y C+A+N +    A  ++ V
Sbjct: 341 PPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQEDSGEYACSATNSIDSVHATAFIIV 400

Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
             A P F   P       G T    C  +G+P P + W   G+ L  D        G  L
Sbjct: 401 Q-ALPQFTVTPQDRVVIEGQTVDFQCEAKGNPPPVIAWTKGGSQLSVDRRHLVLSSG-TL 458

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
            ++GV   D G Y C A N  GS + VA + +     P     P D     G++V++PC 
Sbjct: 459 RISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDTTVEVGANVQLPCS 518

Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405
             GEP P I+W+KD  +  E     I   G L + ++GP D+G Y C A N +G      
Sbjct: 519 SQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGPADAGRYECVARNTIGSASVSM 578

Query: 406 YLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSN 465
            L+V         P  SR          D  +  ++  A   VD A+N+T   LF     
Sbjct: 579 VLSVN-------VPDVSRN--------GDPFVATSIVEAIATVDRAINSTRTHLFDSRPR 623

Query: 466 EQQDHGSLMKLLRFP-DESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFF 524
              D   L+ L R+P D       RA +++ERTL  I++H+Q G+ ++L+     G +  
Sbjct: 624 SPND---LLALFRYPRDPYTVEQARAGEIFERTLQLIQEHVQHGLMVDLN-----GTSVH 675

Query: 525 SPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAMNIQRGR 584
           S     D   +D           K+KR  E L K   D L      +   L         
Sbjct: 676 S-----DTCDLD-----------KQKRARETLEKRGIDGL-----ELCECLHTRKCYHYN 714

Query: 585 DHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIEL 644
           D   P+Y            N   +L+     RRV +     + H  +  HD         
Sbjct: 715 DLVSPQY-----------LNLIANLSGCTAHRRVNNCSDMCF-HQKYRTHD--------- 753

Query: 645 IANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFS 704
                          C++L                QHPMWGASLT F RLLK +YENGF+
Sbjct: 754 -------------GTCNNL----------------QHPMWGASLTAFERLLKSVYENGFN 784

Query: 705 TP 706
           TP
Sbjct: 785 TP 786

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	940
FB|FBgn0011828	1527	Pxn "Peroxidasin" [Drosophila	0.384	0.236	0.297	2.4e-105
UNIPROTKB|F1PKU2	1429	PXDNL "Uncharacterized protein	0.431	0.284	0.299	7.1e-104
MGI|MGI:1916925	1475	Pxdn "peroxidasin homolog (Dro	0.443	0.282	0.313	1.3e-100
UNIPROTKB|I3LDA4	1479	PXDN "Uncharacterized protein"	0.443	0.281	0.304	8.4e-100
UNIPROTKB|F1NN41	1416	PXDN "Uncharacterized protein"	0.443	0.294	0.3	1.2e-99
UNIPROTKB|Q92626	1479	PXDN "Peroxidasin homolog" [Ho	0.443	0.281	0.3	2.1e-99
UNIPROTKB|A1KZ92	1463	PXDNL "Peroxidasin-like protei	0.432	0.278	0.293	2.2e-94
UNIPROTKB|E1C0J7	1411	PXDNL "Uncharacterized protein	0.448	0.299	0.287	2.8e-92
UNIPROTKB|E1C0J1	1424	PXDNL "Uncharacterized protein	0.448	0.296	0.287	3e-92
UNIPROTKB|F1M335	1317	F1M335 "Uncharacterized protei	0.115	0.082	0.605	1.2e-84

FB|FBgn0011828 Pxn "Peroxidasin" [Drosophila melanogaster (taxid:7227)]

 Score = 437 (158.9 bits), Expect = 2.4e-105, Sum P(4) = 2.4e-105
 Identities = 116/390 (29%), Positives = 190/390 (48%)

Query:   139 PRLVVKPFD-MRAPAGSS-VEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKIHRTGSLRL 195
             P    +P D + A  GS  V + C   G P P I W  +  + ++   + ++   GSL L
Sbjct:   365 PHFTHQPHDQIVALHGSGHVLLDCAASGWPQPDIQWFVNGRQLLQSTPSLQLQANGSLIL 424

Query:   196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG 255
                    +G YRC A N LG   A   + +   P I +  P S T   G    + C  +G
Sbjct:   425 LQPNQLSAGTYRCEARNSLGSVQATARIELKELPEI-LTAPQSQTIKLGKAFVLECDADG 483

Query:   256 HPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
             +PLP + W  +G  L  +   +  E++   LV+   R+  AGVY C A N  G     A 
Sbjct:   484 NPLPTIDWQLNGVPLPGNTPDLQLENENTELVVGAARQEHAGVYRCTAHNENGETSVEAT 543

Query:   315 IRINGHRAP-RLVVKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDR----- 367
             I++   ++P +L ++P ++ A  G+++E+PC+ D  E   +ISW  D    ++       
Sbjct:   544 IKVERSQSPPQLAIEPSNLVAITGTTIELPCQADQPEDGLQISWRHD-GRLIDPNVQLAE 602

Query:   368 NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSA 427
              ++I   GSL + N+   D G Y C   N  G   A   +T+   N+V+ AP        
Sbjct:   603 KYQISGAGSLFVKNVTIPDGGRYECQLKNQFGRASASALVTI--RNNVDLAP-------- 652

Query:   428 SKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQ-DHGSLMKLLRFPDESART 486
                   D  + +A   A++E+D A+N T++ LF   S++   ++G L+++ RFP   AR 
Sbjct:   653 -----GDRYVRIAFAEAAKEIDLAINNTLDMLFSNRSDKAPPNYGELLRVFRFPTGEARQ 707

Query:   487 VVRAADVYERTLSHIKKHIQAGVKMNLSED 516
             + RAA++YERTL +I+KH+Q G  + +  +
Sbjct:   708 LARAAEIYERTLVNIRKHVQEGDNLTMKSE 737

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0005578 "proteinaceous extracellular matrix" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1PKU2 PXDNL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 507 (183.5 bits), Expect = 7.1e-104, Sum P(4) = 7.1e-104
 Identities = 128/427 (29%), Positives = 192/427 (44%)

Query:    46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLN 104
             P     P     ++G+T   TC  EG+P P++ W H+ +SLD  DDH     D   L++ 
Sbjct:   195 PRITYEPQDVEVTSGNTVYFTCRAEGNPKPEIIWIHNNHSLDLEDDHRLNLFDDGTLMIR 254

Query:   105 GVRESDAGVYNCVAQNSEGSAESV-AMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPCKP 162
               RESD G Y C+A+NS G  ++  AM+R +   A P  +++P D     G+S  + C  
Sbjct:   255 NTRESDQGEYQCMARNSAGEVKTQNAMLRYSSPPAKPSFIIQPQDTEVLIGTSTTLECMA 314

Query:   163 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 222
              G P PR++W++   E ++   H +  +G L L N+  QD G + C A+N  G   A   
Sbjct:   315 TGHPHPRVTWTRGNGEALDGSRH-LATSGGLYLKNVTLQDHGQFICHANNNQGTVQATAN 373

Query:   223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
             + V  APP F   P         T    C  EG+P P + W   G  L  +   T    G
Sbjct:   374 IIVQ-APPQFTVIPKDQVVLEEHTVEFLCEAEGNPPPIIAWTKAGGKLPQEGLHTVLSSG 432

Query:   283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 342
               L ++ V   D G Y C A +  G  ++   + +     P L   P D     G ++ I
Sbjct:   433 -TLRIDQVARHDQGQYECQAVSPLGVRKASVQLTVKPKALPVLTQLPQDTSVEVGKNINI 491

Query:   343 PCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
              C  +GEP P I+W+K   +  E     +   G L +Y+ G  D G Y C A N  G  V
Sbjct:   492 SCHAEGEPQPIITWNKAGVQITESGKFHVSGEGMLTIYDAGQADQGRYECVAQNSFGLVV 551

Query:   403 AEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGY 462
             A  +LTV    +++      R+         DD +  ++  A + VD+A+N+T   LF  
Sbjct:   552 ANMFLTVV---AIQ-----GRQ-------AGDDFVESSILDAVQRVDSAINSTRRHLFSQ 596

Query:   463 HSNEQQD 469
                   D
Sbjct:   597 KPRTPSD 603

GO:0020037 "heme binding" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

MGI|MGI:1916925 Pxdn "peroxidasin homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 532 (192.3 bits), Expect = 1.3e-100, Sum P(3) = 1.3e-100
 Identities = 138/440 (31%), Positives = 200/440 (45%)

Query:    46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL 103
             P     P     ++G+T   TC  EG+P P++ W  + N  S+ +D  +    DG +++ 
Sbjct:   243 PRITSEPQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQ 302

Query:   104 NGVRESDAGVYNCVAQNSEGSAESVAM-IRINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
             N  +E+D GVY C+A+N  G A++  + +R  G  A P  V++P +     G SV + C 
Sbjct:   303 N-TQEADEGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEVLVGESVTLECS 361

Query:   162 PDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
               G PLP+I+W++ D      D    I  +G L + N+   DSG Y C ASN +    A 
Sbjct:   362 ATGHPLPQITWTRGDRTPLPIDPRVNITPSGGLYIQNVAQSDSGEYTCFASNSVDSIHAT 421

Query:   221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
              ++ V   P  F   P S     G T    C  +GHP P + W   G+ L  D       
Sbjct:   422 AFIIVQALPQ-FTVTPQSRVVIEGQTVDFQCAAKGHPQPVIAWTKGGSQLSVDRRHLVLS 480

Query:   281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
              G  L ++GV   D G Y C A N  GS + VA + +     P     P DM    G++V
Sbjct:   481 SG-TLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDMTVEVGTNV 539

Query:   341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
             ++PC   GEP P I+W+KD  +  E     I   G L + ++G  D+G Y C A N +G 
Sbjct:   540 QLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGTADAGRYECVARNTIG- 598

Query:   401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
                  Y +V+   SV   P  SR      P VA   +      A   VD A+N+T   LF
Sbjct:   599 -----YASVSMVLSVN-VPDVSRN---GDPYVATSIVE-----AIATVDRAINSTRTHLF 644

Query:   461 GYHSNEQQDHGSLMKLLRFP 480
                     D  +L +  R P
Sbjct:   645 DSRPRSPNDLLALFRYPRDP 664

GO:0004601 "peroxidase activity" evidence=ISO

GO:0005201 "extracellular matrix structural constituent" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0020037 "heme binding" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO;IDA

GO:0031012 "extracellular matrix" evidence=ISO;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

UNIPROTKB|I3LDA4 PXDN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 515 (186.3 bits), Expect = 8.4e-100, Sum P(3) = 8.4e-100
 Identities = 134/440 (30%), Positives = 196/440 (44%)

Query:    46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVL 103
             P     P     + G+T   TC  EG+P P++ W  + N L   +D  +    DG +++ 
Sbjct:   246 PRITSEPQDADVTLGNTVFFTCRAEGNPKPEIIWLRNNNELSMAADSRLNLLDDGTLMIQ 305

Query:   104 NGVRESDAGVYNCVAQNSEGSAESVAM-IRINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
             N  RE+D GVY C+A+N  G A++  + +R  G  A P  V++P +     G SV + C 
Sbjct:   306 N-TREADQGVYQCMAKNVAGEAKTQGVTLRYFGSPARPAFVIQPQNTEVLVGESVTLECS 364

Query:   162 PDGEPLPRISWSKDEAEFVE-DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
               G P PRI+W++ +   V  D    I  +G L + N+  +DSG Y C A+N +    A 
Sbjct:   365 ATGHPPPRITWTRGDGTPVPVDPRVSITPSGGLYIQNVVQEDSGEYTCFAANTVDSVHAT 424

Query:   221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
              ++ V   P  F   P     + G T    C  +G+P P + W   G+ L  D       
Sbjct:   425 AFIIVQALPQ-FTVTPQDRAVTEGQTVDFHCEAKGYPQPVIAWTKGGSPLSVDRRHLVLS 483

Query:   281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
              G  L ++ V   D G Y C A N  GS    A + +     P     P D+ A  GSSV
Sbjct:   484 SG-TLRISSVALHDQGQYECQAVNIIGSQRVTAHLTVQARVTPVFASVPSDVTAEVGSSV 542

Query:   341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
             ++PC   GEP P I+W+KD  +  E     I   G L ++++G  D+G Y C A N +G+
Sbjct:   543 QLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTIHDVGTADAGRYECVARNTMGQ 602

Query:   401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
                   L+V         P  SR      P VA   +      A   VD A+N+T   LF
Sbjct:   603 ASVSMLLSVN-------VPDVSRN---GDPFVATSIVE-----AIATVDRAINSTRTHLF 647

Query:   461 GYHSNEQQDHGSLMKLLRFP 480
                     D  +L +  R P
Sbjct:   648 DSRPRSPNDLLALFRYPRDP 667

GO:0020037 "heme binding" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

UNIPROTKB|F1NN41 PXDN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 509 (184.2 bits), Expect = 1.2e-99, Sum P(3) = 1.2e-99
 Identities = 132/440 (30%), Positives = 193/440 (43%)

Query:    46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVL 103
             P     P     ++G+T   TC  EG+P P++ W  + N L    D  +    DG +++ 
Sbjct:   182 PRITSEPQDVDVTSGNTVYFTCRAEGNPKPEIIWLRNNNELIMKEDSRLNLLDDGTLMIQ 241

Query:   104 NGVRESDAGVYNCVAQNSEGSAESVAM-IRINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
             N  +E+D G+Y C+A+N  G  ++  + +R  G  A P  V+ P +     G SV + C 
Sbjct:   242 N-TQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPSFVIHPQNTEVLVGESVTLECS 300

Query:   162 PDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
               G P P+I+W+K D      D    I  +G L + N+  +DSG Y C A+N +G   A 
Sbjct:   301 ATGHPQPQITWTKGDRTPLPSDPRITITPSGGLYIQNVKQEDSGEYTCFATNSIGNIHAT 360

Query:   221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
              Y+ V   P  F   P   T   G T    C  +G+P P + W   G  L  D       
Sbjct:   361 AYIIVQALPQ-FTVTPQDKTVIEGQTVDFPCEAQGYPQPVIAWTKGGGQLSVDRRHLVLS 419

Query:   281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
              G  L ++ V   D G Y C A N  GS   V  + +     P     P DM    G++V
Sbjct:   420 SG-TLRISRVALHDQGQYECQAVNIIGSQRIVVYLTVQPRVTPVFASVPSDMTVEVGTNV 478

Query:   341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
             +IPC   GEP P I+W+KD  +  E     +   G L + ++G  D G Y C A N +G 
Sbjct:   479 QIPCSAQGEPEPVITWNKDGVQVTESGKFHVSPEGYLTIRDVGTADEGRYECVARNTIG- 537

Query:   401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
                  Y +V+   SV   P+ SR          D  +  ++  A   VD A+N+T   LF
Sbjct:   538 -----YSSVSMVLSVN-VPNVSRN--------GDPFVQTSIVEAIATVDRAINSTRTHLF 583

Query:   461 GYHSNEQQDHGSLMKLLRFP 480
                     D  +L +  R P
Sbjct:   584 DSRPRSPNDLLALFRYPRDP 603

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IEA

UNIPROTKB|Q92626 PXDN "Peroxidasin homolog" [Homo sapiens (taxid:9606)]

 Score = 507 (183.5 bits), Expect = 2.1e-99, Sum P(3) = 2.1e-99
 Identities = 132/440 (30%), Positives = 195/440 (44%)

Query:    46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL 103
             P     P     ++G+T   TC  EG+P P++ W  + N  S+ +D  +    DG +++ 
Sbjct:   246 PRITSEPQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQ 305

Query:   104 NGVRESDAGVYNCVAQNSEGSAESVAM-IRINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
             N  +E+D G+Y C+A+N  G  ++  + +R  G  A P  V++P +     G SV + C 
Sbjct:   306 N-TQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQPQNTEVLVGESVTLECS 364

Query:   162 PDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
               G P PRISW++ D      D    I  +G L + N+   DSG Y C+A+N +    A 
Sbjct:   365 ATGHPPPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQGDSGEYACSATNNIDSVHAT 424

Query:   221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
              ++ V   P  F   P       G T    C  +G+P P + W   G+ L  D       
Sbjct:   425 AFIIVQALPQ-FTVTPQDRVVIEGQTVDFQCEAKGNPPPVIAWTKGGSQLSVDRRHLVLS 483

Query:   281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
              G  L ++GV   D G Y C A N  GS + VA + +     P     P D     G++V
Sbjct:   484 SG-TLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDTTVEVGANV 542

Query:   341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
             ++PC   GEP P I+W+KD  +  E     I   G L + ++GP D+G Y C A N +G 
Sbjct:   543 QLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGPADAGRYECVARNTIGS 602

Query:   401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
                   L+V         P  SR      P VA   +      A   VD A+N+T   LF
Sbjct:   603 ASVSMVLSVN-------VPDVSRN---GDPFVATSIVE-----AIATVDRAINSTRTHLF 647

Query:   461 GYHSNEQQDHGSLMKLLRFP 480
                     D  +L +  R P
Sbjct:   648 DSRPRSPNDLLALFRYPRDP 667

GO:0046872 "metal ion binding" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005152 "interleukin-1 receptor antagonist activity" evidence=NAS

GO:0006955 "immune response" evidence=NAS

GO:0004601 "peroxidase activity" evidence=IDA

GO:0005201 "extracellular matrix structural constituent" evidence=IDA

GO:0031012 "extracellular matrix" evidence=IDA

GO:0030198 "extracellular matrix organization" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IDA

GO:0020037 "heme binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0001960 "negative regulation of cytokine-mediated signaling pathway" evidence=NAS

UNIPROTKB|A1KZ92 PXDNL "Peroxidasin-like protein" [Homo sapiens (taxid:9606)]

 Score = 481 (174.4 bits), Expect = 2.2e-94, Sum P(4) = 2.2e-94
 Identities = 126/429 (29%), Positives = 192/429 (44%)

Query:    44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLV 102
             +P I  + P      +G+T   TC  EG+P P++ W H+ +SLD +D       D   L+
Sbjct:   233 SPRITFE-PQDVEVPSGNTVYFTCRAEGNPKPEIIWIHNNHSLDLEDDTRLNVFDDGTLM 291

Query:   103 LNGVRESDAGVYNCVAQNSEGSAESV-AMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPC 160
             +   RESD GVY C+A+NS G A++  AM+R +   A P  V++P D     G+S  + C
Sbjct:   292 IRNTRESDQGVYQCMARNSAGEAKTQSAMLRYSSLPAKPSFVIQPQDTEVLIGTSTTLEC 351

Query:   161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
                G P P I+W++D    ++   H    +G L L NI  +D G + C A+N  G   A 
Sbjct:   352 MATGHPHPLITWTRDNGLELDGSRHVATSSG-LYLQNITQRDHGRFTCHANNSHGTVQAA 410

Query:   221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
               + V  APP F   P              C  +G+P P + W   G  L  +   T   
Sbjct:   411 ANIIVQ-APPQFTVTPKDQVVLEEHAVEWLCEADGNPPPVIVWTKTGGQLPVEGQHTVLS 469

Query:   281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
              G  L ++   + D G Y C A +S G  +    + +           P D     G ++
Sbjct:   470 SG-TLRIDRAAQHDQGQYECQAVSSLGVKKVSVQLTVKPKALAVFTQLPQDTSVEVGKNI 528

Query:   341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
              I C   GEP P I+W+K+  +  E     +   G+L +Y+ G  D G Y C A N  G 
Sbjct:   529 NISCHAQGEPQPIITWNKEGVQITESGKFHVDDEGTLTIYDAGFPDQGRYECVARNSFGL 588

Query:   401 DVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLF 460
              V   +LTVT   +++      R+         DD +  ++  A + VD+A+N+T   LF
Sbjct:   589 AVTNMFLTVT---AIQ-----GRQ-------AGDDFVESSILDAVQRVDSAINSTRRHLF 633

Query:   461 GYHSNEQQD 469
                 +   D
Sbjct:   634 SQKPHTSSD 642

GO:0004519 "endonuclease activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004601 "peroxidase activity" evidence=ISS

GO:0042744 "hydrogen peroxide catabolic process" evidence=ISS

GO:0020037 "heme binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

UNIPROTKB|E1C0J7 PXDNL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 458 (166.3 bits), Expect = 2.8e-92, Sum P(3) = 2.8e-92
 Identities = 129/448 (28%), Positives = 193/448 (43%)

Query:    46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVL 103
             P     P       G+T   TC  EG+P P + W H+ N +D   D+ +    DG +++ 
Sbjct:   234 PRITSEPHDVDVLLGNTVYFTCRAEGNPKPAIIWLHNNNEIDMKDDNRLNLLQDGTLMIQ 293

Query:   104 NGVRESDAGVYNCVAQNSEGSAESVAMI-RINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
             N  +ESD GVY C+A+N  G  ++  ++ R  G  + P  V++P +     G SV + C 
Sbjct:   294 N-TKESDKGVYQCMAKNIAGEVKTQEVVLRYFGTPSKPTFVIQPQNTEVLVGESVTLECG 352

Query:   162 PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
               G P PRISW+        +D    I  +G L + N+   D G Y C ASN  G   A 
Sbjct:   353 VSGHPHPRISWTLGTGSPLPQDPRFAITSSGGLFIQNVTFSDQGQYNCNASNTEGSIQAT 412

Query:   221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD-GNSLDSDDHVTYE 279
               + V  +P  F+  P   T + G +    C  EGHP P + W    G  L S+   +  
Sbjct:   413 ARIIVQDSPR-FLLVPTDQTVTEGQSVDFPCTAEGHPPPVIAWTRAAGGPLPSNRRHSIL 471

Query:   280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 339
               G + V+  V   D G Y C A ++ G       + +     P  +  P D+ A  G  
Sbjct:   472 STGTLRVMR-VALHDQGQYECHAISAIGVRTLPVQLAVTPRVIPVFLHPPQDVVAETGQD 530

Query:   340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
             V I C   G+P P I+W K+  +  E     + + G+L + ++G  D G Y C A N  G
Sbjct:   531 VAITCAAQGDPRPTITWVKEGIQITESGKFHVSQDGTLSIQDLGVADQGRYECIARNPFG 590

Query:   400 EDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSL 459
                +   LT+T       A    R          D  +  +++ A   VD A+N+T   L
Sbjct:   591 FTSSAMQLTIT-------ATDVGRS--------GDTFVATSLREAISSVDHAINSTRTEL 635

Query:   460 FGYHSNEQQDHGSLMKLLRFPD--ESAR 485
             F        D  +L +  R P   E+AR
Sbjct:   636 FSRRPKTPNDLLALFRYPRDPYTIETAR 663

GO:0004601 "peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|E1C0J1 PXDNL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 458 (166.3 bits), Expect = 3.0e-92, Sum P(3) = 3.0e-92
 Identities = 129/448 (28%), Positives = 193/448 (43%)

Query:    46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVL 103
             P     P       G+T   TC  EG+P P + W H+ N +D   D+ +    DG +++ 
Sbjct:   234 PRITSEPHDVDVLLGNTVYFTCRAEGNPKPAIIWLHNNNEIDMKDDNRLNLLQDGTLMIQ 293

Query:   104 NGVRESDAGVYNCVAQNSEGSAESVAMI-RINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
             N  +ESD GVY C+A+N  G  ++  ++ R  G  + P  V++P +     G SV + C 
Sbjct:   294 N-TKESDKGVYQCMAKNIAGEVKTQEVVLRYFGTPSKPTFVIQPQNTEVLVGESVTLECG 352

Query:   162 PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
               G P PRISW+        +D    I  +G L + N+   D G Y C ASN  G   A 
Sbjct:   353 VSGHPHPRISWTLGTGSPLPQDPRFAITSSGGLFIQNVTFSDQGQYNCNASNTEGSIQAT 412

Query:   221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD-GNSLDSDDHVTYE 279
               + V  +P  F+  P   T + G +    C  EGHP P + W    G  L S+   +  
Sbjct:   413 ARIIVQDSPR-FLLVPTDQTVTEGQSVDFPCTAEGHPPPVIAWTRAAGGPLPSNRRHSIL 471

Query:   280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 339
               G + V+  V   D G Y C A ++ G       + +     P  +  P D+ A  G  
Sbjct:   472 STGTLRVMR-VALHDQGQYECHAISAIGVRTLPVQLAVTPRVIPVFLHPPQDVVAETGQD 530

Query:   340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
             V I C   G+P P I+W K+  +  E     + + G+L + ++G  D G Y C A N  G
Sbjct:   531 VAITCAAQGDPRPTITWVKEGIQITESGKFHVSQDGTLSIQDLGVADQGRYECIARNPFG 590

Query:   400 EDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSL 459
                +   LT+T       A    R          D  +  +++ A   VD A+N+T   L
Sbjct:   591 FTSSAMQLTIT-------ATDVGRS--------GDTFVATSLREAISSVDHAINSTRTEL 635

Query:   460 FGYHSNEQQDHGSLMKLLRFPD--ESAR 485
             F        D  +L +  R P   E+AR
Sbjct:   636 FSRRPKTPNDLLALFRYPRDPYTIETAR 663

GO:0004601 "peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|F1M335 F1M335 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 341 (125.1 bits), Expect = 1.2e-84, Sum P(4) = 1.2e-84
 Identities = 66/109 (60%), Positives = 82/109 (75%)

Query:   519 LGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAM 578
             L KAFFSP+R+V+EGG+DPLLRG      K + P++ LN ELT++LF+  H V+LDLAA+
Sbjct:   937 LHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRIPSQLLNTELTERLFSMAHTVALDLAAI 996

Query:   579 NIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYG 627
             NIQRGRDHGIP Y+ +R YC L  A TFEDL  EI    +R+KLQRLYG
Sbjct:   997 NIQRGRDHGIPPYHDYRVYCNLSAAYTFEDLKNEIKSPVIREKLQRLYG 1045

GO:0004601 "peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.11.1.7	LOW CONFIDENCE prediction!
3rd Layer	1.11.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	940
cd09826	440	cd09826, peroxidasin_like, Animal heme peroxidase	2e-57
cd09825	565	cd09825, thyroid_peroxidase, Thyroid peroxidase (T	3e-42
cd09823	378	cd09823, peroxinectin_like, peroxinectin_like anim	2e-37
cd09826	440	cd09826, peroxidasin_like, Animal heme peroxidase	3e-37
cd09824	411	cd09824, myeloperoxidase_like, Myeloperoxidases, e	7e-36
pfam03098	521	pfam03098, An_peroxidase, Animal haem peroxidase	4e-35
cd09823	378	cd09823, peroxinectin_like, peroxinectin_like anim	3e-29
pfam03098	521	pfam03098, An_peroxidase, Animal haem peroxidase	2e-28
cd09824	411	cd09824, myeloperoxidase_like, Myeloperoxidases, e	6e-22
cd09822	420	cd09822, peroxinectin_like_bacterial, Uncharacteri	2e-21
cd09825	565	cd09825, thyroid_peroxidase, Thyroid peroxidase (T	7e-21
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-20
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-20
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-19
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-19
cd05396	370	cd05396, An_peroxidase_like, Animal heme peroxidas	7e-19
cd09822	420	cd09822, peroxinectin_like_bacterial, Uncharacteri	5e-15
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-14
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-14
smart00409	85	smart00409, IG, Immunoglobulin	3e-14
smart00409	85	smart00409, IG, Immunoglobulin	3e-14
pfam03098	521	pfam03098, An_peroxidase, Animal haem peroxidase	6e-14
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-14
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-14
smart00409	85	smart00409, IG, Immunoglobulin	6e-14
smart00409	85	smart00409, IG, Immunoglobulin	6e-14
cd09826	440	cd09826, peroxidasin_like, Animal heme peroxidase	9e-13
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-12
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-12
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-12
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-12
cd05396	370	cd05396, An_peroxidase_like, Animal heme peroxidas	4e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-12
cd09820	558	cd09820, dual_peroxidase_like, Dual oxidase and re	5e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-12
cd09825	565	cd09825, thyroid_peroxidase, Thyroid peroxidase (T	8e-12
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	9e-12
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	9e-12
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	9e-12
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	9e-12
pfam03098	521	pfam03098, An_peroxidase, Animal haem peroxidase	5e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-10
cd09820	558	cd09820, dual_peroxidase_like, Dual oxidase and re	1e-10
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-10
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-10
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-10
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-10
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-10
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-10
cd09823	378	cd09823, peroxinectin_like, peroxinectin_like anim	5e-10
pfam03098	521	pfam03098, An_peroxidase, Animal haem peroxidase	7e-10
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	7e-10
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	7e-10
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-10
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-10
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-09
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-09
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	4e-09
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	4e-09
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	5e-09
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	5e-09
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-09
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-09
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-09
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-09
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-08
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-08
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-08
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-08
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	2e-08
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	2e-08
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	3e-08
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	3e-08
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	3e-08
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	3e-08
pfam00047	62	pfam00047, ig, Immunoglobulin domain	4e-08
pfam00047	62	pfam00047, ig, Immunoglobulin domain	4e-08
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	5e-08
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	5e-08
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	5e-08
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	5e-08
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	6e-08
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	6e-08
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-08
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-08
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	6e-08
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	6e-08
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	6e-08
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	6e-08
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-07
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-07
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-07
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-07
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	4e-07
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	4e-07
PHA02826	227	PHA02826, PHA02826, IL-1 receptor-like protein; Pr	4e-07
cd09818	484	cd09818, PIOX_like, Animal heme oxidases similar t	6e-07
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	7e-07
cd09822	420	cd09822, peroxinectin_like_bacterial, Uncharacteri	8e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-06
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	1e-06
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	1e-06
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	1e-06
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	1e-06
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	1e-06
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	1e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	2e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	2e-06
cd09824	411	cd09824, myeloperoxidase_like, Myeloperoxidases, e	3e-06
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	3e-06
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	3e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	4e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	4e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-06
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	4e-06
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	4e-06
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	5e-06
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	5e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	5e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	5e-06
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	8e-06
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	8e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	9e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	9e-06
cd09825	565	cd09825, thyroid_peroxidase, Thyroid peroxidase (T	1e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	1e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	1e-05
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-05
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-05
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	1e-05
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	1e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-05
cd09816	490	cd09816, prostaglandin_endoperoxide_synthase, Anim	2e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	3e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	3e-05
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-05
smart00409	85	smart00409, IG, Immunoglobulin	4e-05
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	4e-05
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	4e-05
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	4e-05
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	4e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	4e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	4e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-05
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	5e-05
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	5e-05
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	5e-05
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	5e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	7e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	7e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	8e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	8e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	9e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	9e-05
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	1e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	1e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	1e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	1e-04
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	2e-04
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	2e-04
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	2e-04
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	2e-04
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	2e-04
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	2e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-04
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	2e-04
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	2e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	2e-04
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	2e-04
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	2e-04
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	3e-04
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	3e-04
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	3e-04
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	3e-04
cd07702	72	cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-l	3e-04
cd07702	72	cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-l	3e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	4e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	4e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	4e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	4e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	5e-04
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	5e-04
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	5e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	6e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	6e-04
cd09821	570	cd09821, An_peroxidase_bacterial_2, Uncharacterize	6e-04
cd09821	570	cd09821, An_peroxidase_bacterial_2, Uncharacterize	6e-04
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	6e-04
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	6e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	7e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	7e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	8e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	8e-04
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	8e-04
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	8e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	8e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	8e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.001
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.001
cd09817	550	cd09817, linoleate_diol_synthase_like, Linoleate (	0.001
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	0.001
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	0.001
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	0.001
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	0.001
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	0.001
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	0.001
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	0.002
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.002
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.002
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	0.002
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	0.002
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.003
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	0.003
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	0.003
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.003
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	0.004

>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of peroxidasin and related proteins

 Score =  204 bits (520), Expect = 2e-57
 Identities = 71/116 (61%), Positives = 88/116 (75%)

Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDL 575
            L L KAFF+P+RLV+EGG+DPLLRG   + AK + P + LN ELT+KLF   H V+LDL
Sbjct: 232 HLPLHKAFFAPYRLVNEGGIDPLLRGLFATAAKDRVPDQLLNTELTEKLFEMAHEVALDL 291

Query: 576 AAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGF 631
           AA+NIQRGRDHG+P YN +R++C L  A TFEDL  EI +  VR+KL+RLYGHPG 
Sbjct: 292 AALNIQRGRDHGLPGYNDYRKFCNLSVAETFEDLKNEIKNDDVREKLKRLYGHPGN 347

Peroxidasin is a secreted heme peroxidase which is involved in hydrogen peroxide metabolism and peroxidative reactions in the cardiovascular system. The domain co-occurs with extracellular matrix domains and may play a role in the formation of the extracellular matrix. Length = 440

>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO)

 Score =  162 bits (413), Expect = 3e-42
 Identities = 66/114 (57%), Positives = 84/114 (73%)

Query: 517 LSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLA 576
           L+L  AFFSPWRLV EGG+DP++RG I  PAK   P + +N+ELT+KLF   ++ +LDLA
Sbjct: 348 LALHDAFFSPWRLVREGGLDPVIRGLIGGPAKLVTPDDLMNEELTEKLFVLSNSSTLDLA 407

Query: 577 AMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPG 630
           ++N+QRGRDHG+P YN WRE+CGLPR  T  DLA  I D+ V DK+  LY HP 
Sbjct: 408 SLNLQRGRDHGLPGYNDWREFCGLPRLATPADLATAIADQAVADKILDLYKHPD 461

TPO is a member of the animal heme peroxidase family, which is expressed in the thyroid and involved in the processing of iodine and iodine compounds. Specifically, TPO oxidizes iodide via hydrogen peroxide to form active iodine, which is then, for example, incorporated into the tyrosine residues of thyroglobulin to yield mono- and di-iodotyrosines. Length = 565

>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme peroxidases

 Score =  144 bits (366), Expect = 2e-37
 Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 4/121 (3%)

Query: 510 KMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELT-DKLFTTF 568
                  ++L   FF+P RL +EGG+DPLLRG  T PA++         ELT    F   
Sbjct: 189 NYRPQGSVNLHDLFFNPDRLYEEGGLDPLLRGLATQPAQK--VDRFFTDELTTHFFFRGG 246

Query: 569 HAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGH 628
           +   LDLAA+NIQRGRDHG+P YN +RE+CGLPRA TF+DL   +       KL+RLY  
Sbjct: 247 NPFGLDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDLLGIM-SPETIQKLRRLYKS 305

Query: 629 P 629
            
Sbjct: 306 V 306

Peroxinectin is an arthropod protein that plays a role in invertebrate immunity mechanisms. Specifically, peroxinectins are secreted as cell-adhesive and opsonic peroxidases. The immunity mechanism appears to involve an interaction between peroxinectin and a transmembrane receptor of the integrin family. Human myeloperoxidase, which is included in this wider family, has also been reported to interact with integrins. Length = 378

>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of peroxidasin and related proteins

 Score =  145 bits (368), Expect = 3e-37
 Identities = 54/76 (71%), Positives = 63/76 (82%)

Query: 791 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQA 850
           GNID FVG ILED + G RVGPT+ CLL +QF+R+RDGDRFWYENP  F PAQLTQIK+ 
Sbjct: 346 GNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDGDRFWYENPGVFSPAQLTQIKKT 405

Query: 851 SLARVICDSGDRLTEV 866
           SLARV+CD+GD +T V
Sbjct: 406 SLARVLCDNGDNITRV 421

Peroxidasin is a secreted heme peroxidase which is involved in hydrogen peroxide metabolism and peroxidative reactions in the cardiovascular system. The domain co-occurs with extracellular matrix domains and may play a role in the formation of the extracellular matrix. Length = 440

>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil peroxidases, and lactoperoxidases

 Score =  140 bits (355), Expect = 7e-36
 Identities = 53/113 (46%), Positives = 74/113 (65%)

Query: 517 LSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLA 576
           + L KAFF+ WR++ EGG+DP+LRG + +PAK     + L  EL ++LF     + LDLA
Sbjct: 209 VPLHKAFFASWRIIREGGIDPILRGLMATPAKLNNQNQMLVDELRERLFQQTKRMGLDLA 268

Query: 577 AMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           A+N+QRGRDHG+P YNAWR +CGL +     +LA  + +  +  KL  LYG P
Sbjct: 269 ALNLQRGRDHGLPGYNAWRRFCGLSQPQNLAELAAVLNNTVLARKLLDLYGTP 321

This well conserved family of animal heme peroxidases contains members with somewhat diverse functions. Myeloperoxidases are lysosomal proteins found in azurophilic granules of neutrophils and the lysosomes of monocytes. They are involved in the formation of microbicidal agents upon activation of activated neutrophils (neutrophils undergoing respiratory bursts as a result of phagocytosis), by catalyzing the conversion of hydrogen peroxide to hypochlorous acid. As a heme protein, myeloperoxidase is responsible for the greenish tint of pus, which is rich in neutrophils. Eosinophil peroxidases are haloperoxidases as well, preferring bromide over chloride. Expressed by eosinophil granulocytes, they are involved in attacking multicellular parasites and play roles in various inflammatory diseases such as asthma. The haloperoxidase lactoperoxidase is secreted from mucosal glands and provides antibacterial activity by oxidizing a variety of substrates such as bromide or chloride in the presence of hydrogen peroxide. Length = 411

>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase

 Score =  140 bits (356), Expect = 4e-35
 Identities = 56/117 (47%), Positives = 77/117 (65%), Gaps = 5/117 (4%)

Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTT--FHAVS 572
            ++ L   FF+P R+++EG +DPLLRG  + PA+      +L+ EL ++LF    F    
Sbjct: 327 PEIPLHDTFFNPSRILEEG-IDPLLRGLASQPAEL--LDNSLSDELRNRLFGPRNFPGSG 383

Query: 573 LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LDLAA+NIQRGRDHG+P YN +R +CGL  A +FEDL  EI D  + +KL+ LYG P
Sbjct: 384 LDLAALNIQRGRDHGLPPYNEYRRFCGLKPATSFEDLTDEIGDEELAEKLKELYGDP 440

Length = 521

>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme peroxidases

 Score =  120 bits (303), Expect = 3e-29
 Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 3/70 (4%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN---PSTFKPAQLTQIK 848
           +ID +VG + E  V GG VGPT  C++ +QF+R+R GDRFWYEN   PS+F PAQL +I+
Sbjct: 308 DIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYENGGQPSSFTPAQLNEIR 367

Query: 849 QASLARVICD 858
           + SLAR+ICD
Sbjct: 368 KVSLARIICD 377

Peroxinectin is an arthropod protein that plays a role in invertebrate immunity mechanisms. Specifically, peroxinectins are secreted as cell-adhesive and opsonic peroxidases. The immunity mechanism appears to involve an interaction between peroxinectin and a transmembrane receptor of the integrin family. Human myeloperoxidase, which is included in this wider family, has also been reported to interact with integrins. Length = 378

>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase

 Score =  120 bits (302), Expect = 2e-28
 Identities = 40/75 (53%), Positives = 53/75 (70%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           +ID +VG + E  V GG VGPT  C++ +QF R+RDGDRFWYENP  F   QL +I++ +
Sbjct: 442 DIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDGDRFWYENPGVFTGEQLEEIRKTT 501

Query: 852 LARVICDSGDRLTEV 866
           LARVICD+   +T V
Sbjct: 502 LARVICDNTPGITRV 516

Length = 521

>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil peroxidases, and lactoperoxidases

 Score = 99.0 bits (247), Expect = 6e-22
 Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 2/84 (2%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G + E  V GGRVGP + CL+  QF+RIRDGDRFW+ENP  F   Q   ++  S
Sbjct: 323 NIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGDRFWWENPGVFTEEQRESLRSVS 382

Query: 852 LARVICDSGDRLTEV-RVCFSPRP 874
           L+R+ICD+   +T+V R  F P  
Sbjct: 383 LSRIICDN-TGITKVPRDPFQPNS 405

This well conserved family of animal heme peroxidases contains members with somewhat diverse functions. Myeloperoxidases are lysosomal proteins found in azurophilic granules of neutrophils and the lysosomes of monocytes. They are involved in the formation of microbicidal agents upon activation of activated neutrophils (neutrophils undergoing respiratory bursts as a result of phagocytosis), by catalyzing the conversion of hydrogen peroxide to hypochlorous acid. As a heme protein, myeloperoxidase is responsible for the greenish tint of pus, which is rich in neutrophils. Eosinophil peroxidases are haloperoxidases as well, preferring bromide over chloride. Expressed by eosinophil granulocytes, they are involved in attacking multicellular parasites and play roles in various inflammatory diseases such as asthma. The haloperoxidase lactoperoxidase is secreted from mucosal glands and provides antibacterial activity by oxidizing a variety of substrates such as bromide or chloride in the presence of hydrogen peroxide. Length = 411

>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of heme peroxidases, mostly bacterial

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 14/119 (11%)

Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDK----LFTTFHA 570
             L+L  AFF+P   ++E G+DPLLRG  +  A      + ++  + D     LF    A
Sbjct: 231 TSLALRDAFFNP-DELEENGIDPLLRGLASQVA------QEIDTFIVDDVRNFLFGPPGA 283

Query: 571 VSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
              DLAA+NIQRGRDHG+P YN  RE  GLP   +F D+     D  +  +L  +YG  
Sbjct: 284 GGFDLAALNIQRGRDHGLPSYNQLREALGLPAVTSFSDITS---DPDLAARLASVYGDV 339

Animal heme peroxidases are diverse family of enzymes which are not restricted to animals. Members are also found in metazoans, fungi, and plants, and also in bacteria - like most members of this family of uncharacterized proteins. Length = 420

>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO)

 Score = 97.5 bits (243), Expect = 7e-21
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 791 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQA 850
            NID ++G + ED + G R GP   CL+  Q K +RDGDRFW+EN + F  AQ  ++++ 
Sbjct: 461 DNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGDRFWWENSNVFTDAQRRELRKH 520

Query: 851 SLARVICDSGDRLTEV 866
           SL+RVICD+   LT V
Sbjct: 521 SLSRVICDNTG-LTRV 535

TPO is a member of the animal heme peroxidase family, which is expressed in the thyroid and involved in the processing of iodine and iodine compounds. Specifically, TPO oxidizes iodide via hydrogen peroxide to form active iodine, which is then, for example, incorporated into the tyrosine residues of thyroglobulin to yield mono- and di-iodotyrosines. Length = 565

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 86.2 bits (214), Expect = 2e-20
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 195
           P+   KP D+    G S    C   G+P P +SW KD          K+   G   +L +
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            N+ P D G Y C A+N  GE  A   LTV
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 86.2 bits (214), Expect = 2e-20
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 379
           P+   KP D+    G S    C   G+P P +SW KD          K+   G   +L +
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            N+ P D G Y C A+N  GE  A   LTV
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVL 103
           P F Q+P       G ++R TC V G P P ++WF DG  L S D   VTYE   + L +
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVA 129
           + V+  D G Y CVA NS G AE+ A
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASA 86

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVL 287
           P F Q+P       G ++R TC V G P P ++WF DG  L S D   VTYE   + L +
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVA 313
           + V+  D G Y CVA NS G AE+ A
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASA 86

Length = 90

>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related proteins

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 503 KHIQAGVKMNLSEDLSLGKAFFSPWRLV-DEGGVDPLLRGFITSPAKRKRPTENLNKELT 561
             I    +     D+ L   FF+  R +  + G+DPLLRGF+  PA         N +  
Sbjct: 180 DRIDENGQPKEIPDVPLKDFFFNTSRSILSDTGLDPLLRGFLRQPAGLIDQ----NVDDV 235

Query: 562 DKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDK 621
             LF     V LDLAA+NIQRGRD G+P YN  R + GL    +F+D+   +TD  +  K
Sbjct: 236 MFLFGPLEGVGLDLAALNIQRGRDLGLPSYNEVRRFIGLKPPTSFQDI---LTDPELAKK 292

Query: 622 LQRLYGHP 629
           L  LYG P
Sbjct: 293 LAELYGDP 300

A diverse family of enzymes, which includes prostaglandin G/H synthase, thyroid peroxidase, myeloperoxidase, linoleate diol synthase, lactoperoxidase, peroxinectin, peroxidasin, and others. Despite its name, this family is not restricted to metazoans: members are found in fungi, plants, and bacteria as well. Length = 370

>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of heme peroxidases, mostly bacterial

 Score = 78.1 bits (193), Expect = 5e-15
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
            ID +VG + ED V+GG VG T   ++ DQF R+RDGDRF+YEN       ++  I+  +
Sbjct: 341 QIDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDGDRFFYENDD-LLLDEIADIENTT 399

Query: 852 LARVI 856
           LA VI
Sbjct: 400 LADVI 404

Animal heme peroxidases are diverse family of enzymes which are not restricted to animals. Members are also found in metazoans, fungi, and plants, and also in bacteria - like most members of this family of uncharacterized proteins. Length = 420

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRE 108
           P S T   G +  ++C   G P P++TW+  G  L        V+       L ++ V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 109 SDAGVYNCVAQNSEGSAESVAMIRI 133
            D+G Y C A NS GSA S   + +
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRE 292
           P S T   G +  ++C   G P P++TW+  G  L        V+       L ++ V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 293 SDAGVYNCVAQNSEGSAESVAMIRI 317
            D+G Y C A NS GSA S   + +
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRE 108
           P S T   G +  ++C   G P P++TW+  G  L        V+       L ++ V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 109 SDAGVYNCVAQNSEGSAESVAMIRI 133
            D+G Y C A NS GSA S   + +
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRE 292
           P S T   G +  ++C   G P P++TW+  G  L        V+       L ++ V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 293 SDAGVYNCVAQNSEGSAESVAMIRI 317
            D+G Y C A NS GSA S   + +
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase

 Score = 75.4 bits (186), Expect = 6e-14
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSP 714
           YR+ DG+CNNLQ+P+WGA+ T F RLL P+YE+G STP   +  SP
Sbjct: 1   YRSADGSCNNLQNPLWGAAGTPFTRLLPPVYEDGVSTPRGSVNGSP 46

Length = 521

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTG---SLRLYNIGPQD 202
            +    G SV + C+  G P P ++W K   + + E     + R+G   +L + N+ P+D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 203 SGLYRCTASNLLGEDVAEGYLTV 225
           SG Y C A+N  G   +   LTV
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTG---SLRLYNIGPQD 386
            +    G SV + C+  G P P ++W K   + + E     + R+G   +L + N+ P+D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
           SG Y C A+N  G   +   LTV
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTG---SLRLYNIGPQD 202
            +    G SV + C+  G P P ++W K   + + E     + R+G   +L + N+ P+D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 203 SGLYRCTASNLLGEDVAEGYLTV 225
           SG Y C A+N  G   +   LTV
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTG---SLRLYNIGPQD 386
            +    G SV + C+  G P P ++W K   + + E     + R+G   +L + N+ P+D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
           SG Y C A+N  G   +   LTV
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of peroxidasin and related proteins

 Score = 71.2 bits (175), Expect = 9e-13
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 717 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
           GNID FVG ILED + G RVGPT+ CLL +QF+R+RDG
Sbjct: 346 GNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDG 383

Peroxidasin is a secreted heme peroxidase which is involved in hydrogen peroxide metabolism and peroxidative reactions in the cardiovascular system. The domain co-occurs with extracellular matrix domains and may play a role in the formation of the extracellular matrix. Length = 440

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 62.9 bits (152), Expect = 3e-12
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------FVLVLNGVRESDAGVYNCV 117
            +TCL  G P P +TW  +G  L S                  L ++ V   D+G Y CV
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 118 AQNSEGSAESVA 129
           A NS G+  +  
Sbjct: 62  ASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 62.9 bits (152), Expect = 3e-12
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------FVLVLNGVRESDAGVYNCV 301
            +TCL  G P P +TW  +G  L S                  L ++ V   D+G Y CV
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 302 AQNSEGSAESVA 313
           A NS G+  +  
Sbjct: 62  ASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 28/73 (38%), Positives = 33/73 (45%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
           G  V I CKP   P P ISWSK            I   GSL + N+   D G Y C A N
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 213 LLGEDVAEGYLTV 225
             G+  + G L+V
Sbjct: 61  FFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 28/73 (38%), Positives = 33/73 (45%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           G  V I CKP   P P ISWSK            I   GSL + N+   D G Y C A N
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 397 LLGEDVAEGYLTV 409
             G+  + G L+V
Sbjct: 61  FFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related proteins

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 16/168 (9%)

Query: 700 ENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
            +    P+        AG ID  V    +     G +      L     +R RD  +  +
Sbjct: 209 SDTGLDPLLRGFLRQPAGLIDQNV---DDVMFLFGPLEGVGLDLAALNIQRGRDLGLPSY 265

Query: 760 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG--------NIDPFVGAILEDQVDGGRVG 811
                E +   G   PT    ++   +  +          ++D +VG +LE +V   R+G
Sbjct: 266 N----EVRRFIGLKPPTSFQDILTDPELAKKLAELYGDPDDVDLWVGGLLEKKVPPARLG 321

Query: 812 PTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQI-KQASLARVICD 858
             +  ++++QFKR+ DGDRF+Y N + F  +   ++ K  SLA +IC 
Sbjct: 322 ELLATIILEQFKRLVDGDRFYYVNYNPFGKSGKEELEKLISLADIICL 369

A diverse family of enzymes, which includes prostaglandin G/H synthase, thyroid peroxidase, myeloperoxidase, linoleate diol synthase, lactoperoxidase, peroxinectin, peroxidasin, and others. Despite its name, this family is not restricted to metazoans: members are found in fungi, plants, and bacteria as well. Length = 370

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
           G +  +TC  EG+P+P +TW  DG  L   +       G  L +  V   D+G+Y CVA+
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFV--ASGSTLTIKSVSLEDSGLYTCVAE 59

Query: 120 NSEG 123
           NS G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
           G +  +TC  EG+P+P +TW  DG  L   +       G  L +  V   D+G+Y CVA+
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFV--ASGSTLTIKSVSLEDSGLYTCVAE 59

Query: 304 NSEG 307
           NS G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme peroxidases

 Score = 69.3 bits (170), Expect = 5e-12
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 560 LTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREI--TDRR 617
           L D LF        DL A+NIQRGRDHG+P+YN  RE  GLP   T+ D+  ++   D  
Sbjct: 370 LRDYLFGPLEFSRRDLMALNIQRGRDHGLPDYNTAREAFGLPPRTTWSDINPDLFKKDPE 429

Query: 618 VRDKLQRLYG 627
           + ++L  LYG
Sbjct: 430 LLERLAELYG 439

Animal heme peroxidases of the dual-oxidase like subfamily play vital roles in the innate mucosal immunity of gut epithelia. They provide reactive oxygen species which help control infection. Length = 558

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
           G SV + C  +G P+P I+W KD     E          +L + ++  +DSGLY C A N
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAEN 60

Query: 213 LLG 215
             G
Sbjct: 61  SAG 63

Length = 63

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           G SV + C  +G P+P I+W KD     E          +L + ++  +DSGLY C A N
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAEN 60

Query: 397 LLG 399
             G
Sbjct: 61  SAG 63

Length = 63

>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO)

 Score = 68.6 bits (168), Expect = 8e-12
 Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 874 PTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEG-IDCKKSCAFSPPCFPMEVP 932
            +T++TPD + +HM+  WGQ++DHD+D    + S   + G  DCK +C    PCFP+++P
Sbjct: 50  SSTAVTPDDLYSHMLTVWGQYIDHDIDFTPQSVSRTMFIGSTDCKMTCENQNPCFPIQLP 109

Query: 933 HDDP 936
            +DP
Sbjct: 110 SEDP 113

TPO is a member of the animal heme peroxidase family, which is expressed in the thyroid and involved in the processing of iodine and iodine compounds. Specifically, TPO oxidizes iodide via hydrogen peroxide to form active iodine, which is then, for example, incorporated into the tyrosine residues of thyroglobulin to yield mono- and di-iodotyrosines. Length = 565

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGP 200
           VV P D  A  G +V + C   G P+P+I W K D +               L++ NI  
Sbjct: 5   VVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP--SSAEISMSGAVLKIPNIQF 62

Query: 201 QDSGLYRCTASNLLGEDVAEGYLTV 225
           +D G Y C A N+ G+D  +G + V
Sbjct: 63  EDEGTYECEAENIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGP 384
           VV P D  A  G +V + C   G P+P+I W K D +               L++ NI  
Sbjct: 5   VVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP--SSAEISMSGAVLKIPNIQF 62

Query: 385 QDSGLYRCTASNLLGEDVAEGYLTV 409
           +D G Y C A N+ G+D  +G + V
Sbjct: 63  EDEGTYECEAENIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 61.3 bits (149), Expect = 9e-12
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 50  QRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 108
             P  T  + G  + + C    GHP P ++W  DG  L+ D+      D   L++   R+
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60

Query: 109 SDAGVYNCVAQNSEGSAESVA 129
           SD G Y CVA N  G  ES A
Sbjct: 61  SDEGTYKCVATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 61.3 bits (149), Expect = 9e-12
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 234 QRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 292
             P  T  + G  + + C    GHP P ++W  DG  L+ D+      D   L++   R+
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60

Query: 293 SDAGVYNCVAQNSEGSAESVA 313
           SD G Y CVA N  G  ES A
Sbjct: 61  SDEGTYKCVATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase

 Score = 65.8 bits (161), Expect = 5e-11
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 11/67 (16%)

Query: 870 FSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPM 929
              R    I PDP +T M+ QWGQF+DHDL     +          C       P CFP+
Sbjct: 57  LLARKNGFIPPDPGLTLMLAQWGQFIDHDLTFTPHS---------PCCAD--NHPECFPI 105

Query: 930 EVPHDDP 936
            VP  DP
Sbjct: 106 PVPPGDP 112

Length = 521

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 57.9 bits (139), Expect = 1e-10
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVED-------RNHKIHRTGSLRLYNIGPQDSGLYRC 208
           V + C   G P P I+W K+                     + +L + N+  +DSG Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 209 TASNLLGEDVAE 220
            ASN  G   A 
Sbjct: 61  VASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 57.9 bits (139), Expect = 1e-10
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVED-------RNHKIHRTGSLRLYNIGPQDSGLYRC 392
           V + C   G P P I+W K+                     + +L + N+  +DSG Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 393 TASNLLGEDVAE 404
            ASN  G   A 
Sbjct: 61  VASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme peroxidases

 Score = 64.6 bits (158), Expect = 1e-10
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 7/81 (8%)

Query: 781 LIDQFKRIRDGNI---DPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPS 837
           L+++   +   ++   D +VG +LE    GG  G   R +++DQF+R+RDGDRFW+EN  
Sbjct: 430 LLERLAELYGNDLSKLDLYVGGMLES--KGGGPGELFRAIILDQFQRLRDGDRFWFENVK 487

Query: 838 T--FKPAQLTQIKQASLARVI 856
              F   ++ +I+  +L  VI
Sbjct: 488 NGLFTAEEIEEIRNTTLRDVI 508

Animal heme peroxidases of the dual-oxidase like subfamily play vital roles in the innate mucosal immunity of gut epithelia. They provide reactive oxygen species which help control infection. Length = 558

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-----DG- 98
           PP  ++ P     S G  + + C  EG P P + W  +G  L++D      H      G 
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 99  ---FVLVLNGVRESDAGVYNCVAQNSEGSAES 127
                +V      SD GVY CVA NS G A S
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-----DG- 282
           PP  ++ P     S G  + + C  EG P P + W  +G  L++D      H      G 
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 283 ---FVLVLNGVRESDAGVYNCVAQNSEGSAES 311
                +V      SD GVY CVA NS G A S
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
           G +V+  C+  G P P I+W+K  ++   DR H +  +G+LR+  +   D G Y C A N
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61

Query: 213 LLGEDVAEGYLTV 225
           ++G       LTV
Sbjct: 62  IVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           G +V+  C+  G P P I+W+K  ++   DR H +  +G+LR+  +   D G Y C A N
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61

Query: 397 LLGEDVAEGYLTV 409
           ++G       LTV
Sbjct: 62  IVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
           VE  C+  G+P+P + W K++ E  + R   I    SL++ N+   D G Y C A N++G
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAE-ILDDKSLKIRNVTAGDEGSYTCEAENMVG 59

Query: 216 EDVAEGYLTV 225
           +  A   LTV
Sbjct: 60  KIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
           VE  C+  G+P+P + W K++ E  + R   I    SL++ N+   D G Y C A N++G
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAE-ILDDKSLKIRNVTAGDEGSYTCEAENMVG 59

Query: 400 EDVAEGYLTV 409
           +  A   LTV
Sbjct: 60  KIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme peroxidases

 Score = 62.2 bits (152), Expect = 5e-10
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
           +ID +VG + E  V GG VGPT  C++ +QF+R+R G
Sbjct: 308 DIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRG 344

Peroxinectin is an arthropod protein that plays a role in invertebrate immunity mechanisms. Specifically, peroxinectins are secreted as cell-adhesive and opsonic peroxidases. The immunity mechanism appears to involve an interaction between peroxinectin and a transmembrane receptor of the integrin family. Human myeloperoxidase, which is included in this wider family, has also been reported to interact with integrins. Length = 378

>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase

 Score = 62.3 bits (152), Expect = 7e-10
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
           +ID +VG + E  V GG VGPT  C++ +QF R+RDG  D F
Sbjct: 442 DIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDG--DRF 481

Length = 521

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 143 VKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNH-KIHRTGSLRLYNIGP 200
           V+P D +   G    + C P  G P P +SW KD      D    +I   G+L +     
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60

Query: 201 QDSGLYRCTASNLLGEDVAE-GYLTV 225
            D G Y+C A+N++GE  +    L+V
Sbjct: 61  SDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 327 VKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNH-KIHRTGSLRLYNIGP 384
           V+P D +   G    + C P  G P P +SW KD      D    +I   G+L +     
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60

Query: 385 QDSGLYRCTASNLLGEDVAE-GYLTV 409
            D G Y+C A+N++GE  +    L+V
Sbjct: 61  SDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 55.3 bits (133), Expect = 9e-10
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
           V+IPC   G+P P I+W+KD  +  E     I   G L + ++G  D G Y C A N +G
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 55.3 bits (133), Expect = 9e-10
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
           V+IPC   G+P P I+W+KD  +  E     I   G L + ++G  D G Y C A N +G
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLV 102
           P   + +P S T S G ++R +C V+G P P +TW  +G  + S     +T         
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62

Query: 103 LNGVRESDAGVYNCVAQNSEGSAES 127
           ++ V+ SD G Y  V +NSEG  E+
Sbjct: 63  ISKVQMSDEGNYTVVVENSEGKQEA 87

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLV 286
           P   + +P S T S G ++R +C V+G P P +TW  +G  + S     +T         
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62

Query: 287 LNGVRESDAGVYNCVAQNSEGSAES 311
           ++ V+ SD G Y  V +NSEG  E+
Sbjct: 63  ISKVQMSDEGNYTVVVENSEGKQEA 87

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYN 197
             + VK  D  A  G +V + C   G P+P I W K           +I  +G+ L+++N
Sbjct: 2   ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM--PATAEISMSGAVLKIFN 59

Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTV 225
           I P+D G Y C A N+ G+D  +  + V
Sbjct: 60  IQPEDEGTYECEAENIKGKDKHQARVYV 87

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYN 381
             + VK  D  A  G +V + C   G P+P I W K           +I  +G+ L+++N
Sbjct: 2   ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM--PATAEISMSGAVLKIFN 59

Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           I P+D G Y C A N+ G+D  +  + V
Sbjct: 60  IQPEDEGTYECEAENIKGKDKHQARVYV 87

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCT 209
           P GSSV + C   G P P I+W KD          +  +   +L L N+ P+DSG Y C 
Sbjct: 7   PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCH 66

Query: 210 ASNLLGE 216
            SN  GE
Sbjct: 67  VSNRAGE 73

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCT 393
           P GSSV + C   G P P I+W KD          +  +   +L L N+ P+DSG Y C 
Sbjct: 7   PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCH 66

Query: 394 ASNLLGE 400
            SN  GE
Sbjct: 67  VSNRAGE 73

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 51  RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 110
            P  T    G    +TC   G+P P  TW+ DG  L S        +GF    N V   D
Sbjct: 5   TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS------QNGF-FTPN-VSAED 56

Query: 111 AGVYNCVAQNSEGS 124
           +G Y CVA N  G 
Sbjct: 57  SGTYTCVASNGGGG 70

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
            P  T    G    +TC   G+P P  TW+ DG  L S        +GF    N V   D
Sbjct: 5   TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS------QNGF-FTPN-VSAED 56

Query: 295 AGVYNCVAQNSEGS 308
           +G Y CVA N  G 
Sbjct: 57  SGTYTCVASNGGGG 70

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLY 206
           PAGS+V + C   G P P I+W KD   F ++          +  +L L ++ P DSG Y
Sbjct: 7   PAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKY 66

Query: 207 RCTASNLLGE 216
            C   N  G 
Sbjct: 67  TCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLY 390
           PAGS+V + C   G P P I+W KD   F ++          +  +L L ++ P DSG Y
Sbjct: 7   PAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKY 66

Query: 391 RCTASNLLGE 400
            C   N  G 
Sbjct: 67  TCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 153 GSSVEIPCKPDGEPLPRISWS---KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 209
           G +  + C+ +G P P I+W        E   D   ++   G+L L N+ P D+ +Y+C 
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNVQPNDTAVYQCN 59

Query: 210 ASNLLGEDVAEGYLTV 225
           ASN+ G  +A  ++ V
Sbjct: 60  ASNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 337 GSSVEIPCKPDGEPLPRISWS---KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 393
           G +  + C+ +G P P I+W        E   D   ++   G+L L N+ P D+ +Y+C 
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNVQPNDTAVYQCN 59

Query: 394 ASNLLGEDVAEGYLTV 409
           ASN+ G  +A  ++ V
Sbjct: 60  ASNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
           G T R+ C  EG P P +TW  +G  ++          DG  L+L+ V+ +D  VY C A
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 119 QNSEG 123
            N  G
Sbjct: 61  SNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
           G T R+ C  EG P P +TW  +G  ++          DG  L+L+ V+ +D  VY C A
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 303 QNSEG 307
            N  G
Sbjct: 61  SNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 157 EIPCKPDGEPLPRISWSKDEA-EFVEDRNHKIHRTGSLRLY---NIGPQDSGLYRCTASN 212
            + C   G P P+I+W KD   +F   R  ++H      ++   ++  +D+G+Y CTA N
Sbjct: 2   RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN 61

Query: 213 LLGEDVAEGYLTV 225
             G   A   LTV
Sbjct: 62  TAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 341 EIPCKPDGEPLPRISWSKDEA-EFVEDRNHKIHRTGSLRLY---NIGPQDSGLYRCTASN 396
            + C   G P P+I+W KD   +F   R  ++H      ++   ++  +D+G+Y CTA N
Sbjct: 2   RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN 61

Query: 397 LLGEDVAEGYLTV 409
             G   A   LTV
Sbjct: 62  TAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 63  SRITCLVEGHPLPQMTWFHDGN-----SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
           +R+ C   GHP PQ+ W  DG      + +   HV  E D F +V   V+  D GVY+C 
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIV--DVKIEDTGVYSCT 58

Query: 118 AQNSEGSAESVAMIRI 133
           AQN+ GS  + A + +
Sbjct: 59  AQNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 247 SRITCLVEGHPLPQMTWFHDGN-----SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
           +R+ C   GHP PQ+ W  DG      + +   HV  E D F +V   V+  D GVY+C 
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIV--DVKIEDTGVYSCT 58

Query: 302 AQNSEGSAESVAMIRI 317
           AQN+ GS  + A + +
Sbjct: 59  AQNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 29/73 (39%), Positives = 35/73 (47%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
           G  V I CKP   P P+ SWSK     V +    I   GSL + NI   D G Y C A N
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 213 LLGEDVAEGYLTV 225
             G+  + G L+V
Sbjct: 61  NRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 29/73 (39%), Positives = 35/73 (47%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           G  V I CKP   P P+ SWSK     V +    I   GSL + NI   D G Y C A N
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 397 LLGEDVAEGYLTV 409
             G+  + G L+V
Sbjct: 61  NRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNC 116
           GS+  +TC V G P   +TWF +G  L+    V  + +      L ++ V   D+G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 117 VA 118
           V 
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNC 300
           GS+  +TC V G P   +TWF +G  L+    V  + +      L ++ V   D+G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 301 VA 302
           V 
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 50  QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRE 108
           Q  V+ T + G +  + C  +G P P MTW  DG  ++S ++  ++  DG  + +  V +
Sbjct: 8   QSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDK 67

Query: 109 SDAGVYNCVAQNSEGSAESVAMIRI 133
            D   Y C+A+N  G  E+   +++
Sbjct: 68  LDEAEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRE 292
           Q  V+ T + G +  + C  +G P P MTW  DG  ++S ++  ++  DG  + +  V +
Sbjct: 8   QSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDK 67

Query: 293 SDAGVYNCVAQNSEGSAESVAMIRI 317
            D   Y C+A+N  G  E+   +++
Sbjct: 68  LDEAEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 46  PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFV 100
           P+F ++P  T +   S      + C   G P P   W  +G  +D   D   +    G +
Sbjct: 2   PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GGNL 60

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAES 127
           ++ N  +  DAG Y C+A N  G+  S
Sbjct: 61  VISNPSKAKDAGRYQCLASNIVGTVLS 87

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 230 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFV 284
           P+F ++P  T +   S      + C   G P P   W  +G  +D   D   +    G +
Sbjct: 2   PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GGNL 60

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAES 311
           ++ N  +  DAG Y C+A N  G+  S
Sbjct: 61  VISNPSKAKDAGRYQCLASNIVGTVLS 87

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRT----GS 192
            PR+V  P D+    G    + CK +G P P I W K+      D++  + HR     GS
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 193 LRLYNI-----GPQDSGLYRCTASNLLGEDV 218
           L    +     G  D G+Y C A N LGE V
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRT----GS 376
            PR+V  P D+    G    + CK +G P P I W K+      D++  + HR     GS
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 377 LRLYNI-----GPQDSGLYRCTASNLLGEDV 402
           L    +     G  D G+Y C A N LGE V
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 49  IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNG 105
              P       GST R+ C   G+P P +TW  DG     +  +         + L+L  
Sbjct: 4   HAVPA------GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILES 57

Query: 106 VRESDAGVYNCVAQNSEGS 124
           V  SD+G Y C+ +N  GS
Sbjct: 58  VVPSDSGKYTCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNG 289
              P       GST R+ C   G+P P +TW  DG     +  +         + L+L  
Sbjct: 4   HAVPA------GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILES 57

Query: 290 VRESDAGVYNCVAQNSEGS 308
           V  SD+G Y C+ +N  GS
Sbjct: 58  VVPSDSGKYTCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 46  PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
           P+F+Q P    + T S  +   + C   G+P+P   W  +G  +D++    Y   DG ++
Sbjct: 2   PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAES 127
           + N     D+G Y C+A NS GS  S
Sbjct: 62  ISNPSEVKDSGRYQCLATNSIGSILS 87

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 230 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 285
           P+F+Q P    + T S  +   + C   G+P+P   W  +G  +D++    Y   DG ++
Sbjct: 2   PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAES 311
           + N     D+G Y C+A NS GS  S
Sbjct: 62  ISNPSEVKDSGRYQCLATNSIGSILS 87

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEF----------VEDRNHKIHRTGSLRLYNIGPQD 202
              + + C+ +G+P+P I+W +    F          +  R H   R  SL L ++   D
Sbjct: 16  LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH--ARVSSLTLKDVQLTD 73

Query: 203 SGLYRCTASNLLGEDVAEGYLTV 225
           +G Y C ASN +G D    YL V
Sbjct: 74  AGRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEF----------VEDRNHKIHRTGSLRLYNIGPQD 386
              + + C+ +G+P+P I+W +    F          +  R H   R  SL L ++   D
Sbjct: 16  LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH--ARVSSLTLKDVQLTD 73

Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
           +G Y C ASN +G D    YL V
Sbjct: 74  AGRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 67  CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
           C+ EG P P+++W   G  L +D    +E+    L ++ V E D G Y C A NS GSA
Sbjct: 5   CIAEGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
           C+ EG P P+++W   G  L +D    +E+    L ++ V E D G Y C A NS GSA
Sbjct: 5   CIAEGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
           + + C  +G P P ISW K   E   DR    +   +L++ N+  +D G YRCTASN LG
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60

Query: 400 EDVAEGYLTVTGE 412
              A   ++VT E
Sbjct: 61  S--ARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 49  IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 108
           I RPV      GS+ R+ C+  G+P P +TW  D   L   +        + L L  ++ 
Sbjct: 4   IARPV------GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKP 57

Query: 109 SDAGVYNCVAQNSEG 123
            D+G Y C   N  G
Sbjct: 58  EDSGKYTCHVSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 292
           I RPV      GS+ R+ C+  G+P P +TW  D   L   +        + L L  ++ 
Sbjct: 4   IARPV------GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKP 57

Query: 293 SDAGVYNCVAQNSEG 307
            D+G Y C   N  G
Sbjct: 58  EDSGKYTCHVSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
           + + C  +G P P ISW K   E   DR    +   +L++ N+  +D G YRCTASN LG
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60

Query: 216 EDVAEGYLTVT 226
              A   ++VT
Sbjct: 61  S--ARHTISVT 69

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
           + C  EG PLP++TW  +G  +       +T   +G  L ++ VR  D G Y C+A+N  
Sbjct: 3   LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62

Query: 123 GSAESVA 129
           G  E ++
Sbjct: 63  GVDEDIS 69

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 306
           + C  EG PLP++TW  +G  +       +T   +G  L ++ VR  D G Y C+A+N  
Sbjct: 3   LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62

Query: 307 GSAESVA 313
           G  E ++
Sbjct: 63  GVDEDIS 69

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 48  FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 107
           +++    T    GS+ R  C   G+P P   W  +G  L S++ +  E     L +  + 
Sbjct: 2   WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--AGDLRITKLS 59

Query: 108 ESDAGVYNCVAQNSEGSAESVAMIRI 133
            SD+G+Y CVA+N  G+  + A + +
Sbjct: 60  LSDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
           +++    T    GS+ R  C   G+P P   W  +G  L S++ +  E     L +  + 
Sbjct: 2   WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--AGDLRITKLS 59

Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRI 317
            SD+G+Y CVA+N  G+  + A + +
Sbjct: 60  LSDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 344 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
           C  +G P P + W + +     +R  K++   +L+L N+   D G Y CTA N   E  A
Sbjct: 5   CIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAEN--SEGSA 62

Query: 404 EGYLTVTGE 412
             + TVT E
Sbjct: 63  RHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 67  CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
           C+ EG P P++ W      L S +     ++   L L+ V ESD G Y C A+NSEGSA
Sbjct: 5   CIAEGLPTPEVHWDRIDGPL-SPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA 62

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
           C+ EG P P++ W      L S +     ++   L L+ V ESD G Y C A+NSEGSA
Sbjct: 5   CIAEGLPTPEVHWDRIDGPL-SPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA 62

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|165173 PHA02826, PHA02826, IL-1 receptor-like protein; Provisional

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 28/150 (18%)

Query: 170 ISWSK-DEAEFVEDRNHK------IH-----RTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           ++WSK D   FV D   +       H     R+ +L + N+   D G+Y CT S+  G  
Sbjct: 65  VTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISS--GNI 122

Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-------MTWFHDGNSL 270
             E  + +T     F    ++  +++G  S++ C   G            +TW+ +GN +
Sbjct: 123 CEESTIRLT-----FDSGTINYQFNSGKDSKLHCY--GTDGISSTFKDYTLTWYKNGNIV 175

Query: 271 DSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
              D +   ++   LV+      D+G+Y C
Sbjct: 176 LYTDRIQLRNNNSTLVIKSATHDDSGIYTC 205

Length = 227

>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant pathogen-inducible oxygenases

 Score = 52.7 bits (127), Expect = 6e-07
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 573 LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYG 627
           +DLAA++I R R+ G+P YN +R    LP A +FEDL     D  V  +L+ +YG
Sbjct: 340 IDLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFEDLTG---DEEVAAELREVYG 391

This is a diverse family of oxygenases related to the animal heme peroxidases, with members from plants, animals, and bacteria. The plant pathogen-inducible oxygenases (PIOX) oxygenate fatty acids into 2R-hydroperoxides. They may be involved in the hypersensitive reaction, rapid and localized cell death induced by infection with pathogens, and the rapidly induced expression of PIOX may be caused by the oxidative burst that occurs in the process of cell death. Length = 484

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
           C  +G P P + W + +     +R  K++   +L+L N+   D G Y CTA N   E  A
Sbjct: 5   CIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAEN--SEGSA 62

Query: 220 EGYLTVT 226
             + TVT
Sbjct: 63  RHHYTVT 69

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of heme peroxidases, mostly bacterial

 Score = 52.3 bits (126), Expect = 8e-07
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
            ID +VG + ED V+GG VG T   ++ DQF R+RDG  D F
Sbjct: 341 QIDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDG--DRF 380

Animal heme peroxidases are diverse family of enzymes which are not restricted to animals. Members are also found in metazoans, fungi, and plants, and also in bacteria - like most members of this family of uncharacterized proteins. Length = 420

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGS-LRLYNIGPQDSGLY 206
           A  G SV + C  DG P P ++W+KD  E +E    K   +  GS + + ++   D   Y
Sbjct: 15  ANLGQSVTLACDADGFPEPTMTWTKD-GEPIESGEEKYSFNEDGSEMTILDVDKLDEAEY 73

Query: 207 RCTASNLLGEDVAEGYLTV 225
            C A N  GE  AE +L V
Sbjct: 74  TCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGS-LRLYNIGPQDSGLY 390
           A  G SV + C  DG P P ++W+KD  E +E    K   +  GS + + ++   D   Y
Sbjct: 15  ANLGQSVTLACDADGFPEPTMTWTKD-GEPIESGEEKYSFNEDGSEMTILDVDKLDEAEY 73

Query: 391 RCTASNLLGEDVAEGYLTV 409
            C A N  GE  AE +L V
Sbjct: 74  TCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLV 102
            P I +    S T  +G    +TC  EG P P  ++W+ +G+             G  L 
Sbjct: 1   KPVITVSPSPSVT--SGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGG--LGSSGSTLT 56

Query: 103 LNGVRESDAGVYNCVAQN 120
           L+ V   D+G Y CVA N
Sbjct: 57  LSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLV 286
            P I +    S T  +G    +TC  EG P P  ++W+ +G+             G  L 
Sbjct: 1   KPVITVSPSPSVT--SGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGG--LGSSGSTLT 56

Query: 287 LNGVRESDAGVYNCVAQN 304
           L+ V   D+G Y CVA N
Sbjct: 57  LSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------------TGSLRLYNIGP 200
           G +    C   G P P I+W K     V  + + I R             G L +YN  P
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQ----VHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP 56

Query: 201 QDSGLYRCTASNLLGEDVAEGYLTV 225
           QD+GLY CTA N  G   A   L+V
Sbjct: 57  QDAGLYTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------------TGSLRLYNIGP 384
           G +    C   G P P I+W K     V  + + I R             G L +YN  P
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQ----VHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP 56

Query: 385 QDSGLYRCTASNLLGEDVAEGYLTV 409
           QD+GLY CTA N  G   A   L+V
Sbjct: 57  QDAGLYTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVED----------RNHKIHRTGSLRLYNIGPQDSGL 205
           + + C+  G+P+P I+W         +          R+H   R  SL L  I   D+G 
Sbjct: 20  ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA--RVSSLTLKYIQYTDAGE 77

Query: 206 YRCTASNLLGEDVAEGYLTV 225
           Y CTASN +G+D    YL V
Sbjct: 78  YLCTASNTIGQDSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVED----------RNHKIHRTGSLRLYNIGPQDSGL 389
           + + C+  G+P+P I+W         +          R+H   R  SL L  I   D+G 
Sbjct: 20  ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA--RVSSLTLKYIQYTDAGE 77

Query: 390 YRCTASNLLGEDVAEGYLTV 409
           Y CTASN +G+D    YL V
Sbjct: 78  YLCTASNTIGQDSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 67  CLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           C V G P P + W  +G+ +   D+  +  EH+  VL   G+ +SD G Y C+A+N  G+
Sbjct: 6   CEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVL---GLVKSDEGFYQCIAENDVGN 62

Query: 125 AESVAMIRI 133
            ++ A + I
Sbjct: 63  VQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
           C V G P P + W  +G+ +   D+  +  EH+  VL   G+ +SD G Y C+A+N  G+
Sbjct: 6   CEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVL---GLVKSDEGFYQCIAENDVGN 62

Query: 309 AESVAMIRI 317
            ++ A + I
Sbjct: 63  VQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
           +I C  +G P P +TW  DG  +          +G+ L +  V  +D G Y CVA+N+ G
Sbjct: 2   QIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGY-LAIRDVGVADQGRYECVARNTIG 60

Query: 124 SAESVAMI 131
            A SV+M+
Sbjct: 61  YA-SVSMV 67

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
           +I C  +G P P +TW  DG  +          +G+ L +  V  +D G Y CVA+N+ G
Sbjct: 2   QIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGY-LAIRDVGVADQGRYECVARNTIG 60

Query: 308 SAESVAMI 315
            A SV+M+
Sbjct: 61  YA-SVSMV 67

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil peroxidases, and lactoperoxidases

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
           NID ++G + E  V GGRVGP + CL+  QF+RIRDG+
Sbjct: 323 NIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGD 360

This well conserved family of animal heme peroxidases contains members with somewhat diverse functions. Myeloperoxidases are lysosomal proteins found in azurophilic granules of neutrophils and the lysosomes of monocytes. They are involved in the formation of microbicidal agents upon activation of activated neutrophils (neutrophils undergoing respiratory bursts as a result of phagocytosis), by catalyzing the conversion of hydrogen peroxide to hypochlorous acid. As a heme protein, myeloperoxidase is responsible for the greenish tint of pus, which is rich in neutrophils. Eosinophil peroxidases are haloperoxidases as well, preferring bromide over chloride. Expressed by eosinophil granulocytes, they are involved in attacking multicellular parasites and play roles in various inflammatory diseases such as asthma. The haloperoxidase lactoperoxidase is secreted from mucosal glands and provides antibacterial activity by oxidizing a variety of substrates such as bromide or chloride in the presence of hydrogen peroxide. Length = 411

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
           G T+R+ C VEG P P +TW  +G  ++ +D           L+L  V+ SD  VY C A
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60

Query: 119 QNSEG 123
           +N  G
Sbjct: 61  RNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
           G T+R+ C VEG P P +TW  +G  ++ +D           L+L  V+ SD  VY C A
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60

Query: 303 QNSEG 307
           +N  G
Sbjct: 61  RNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
           P I +  P  T    G    + C   G+P+PQ+ W     S+ S         G VL + 
Sbjct: 1   PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS--SAEISMSGAVLKIP 58

Query: 105 GVRESDAGVYNCVAQNSEG 123
            ++  D G Y C A+N +G
Sbjct: 59  NIQFEDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
           P I +  P  T    G    + C   G+P+PQ+ W     S+ S         G VL + 
Sbjct: 1   PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS--SAEISMSGAVLKIP 58

Query: 289 GVRESDAGVYNCVAQNSEG 307
            ++  D G Y C A+N +G
Sbjct: 59  NIQFEDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
            P L   P  +    G  V + C   G P P  +W KD       +N            N
Sbjct: 1   KPVLTPSPTVVFE--GEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTP-------N 51

Query: 198 IGPQDSGLYRCTASN 212
           +  +DSG Y C ASN
Sbjct: 52  VSAEDSGTYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
            P L   P  +    G  V + C   G P P  +W KD       +N            N
Sbjct: 1   KPVLTPSPTVVFE--GEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTP-------N 51

Query: 382 IGPQDSGLYRCTASN 396
           +  +DSG Y C ASN
Sbjct: 52  VSAEDSGTYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
           R+   V+ +P P++ W+ +G  +   +    +  G  L +  V E DAG Y  V  N 
Sbjct: 2   RLPVKVKAYPPPEIQWYKNGKLISEKNR--TKKSGHSLTIKDVTEEDAGNYTVVLTNK 57

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 305
           R+   V+ +P P++ W+ +G  +   +    +  G  L +  V E DAG Y  V  N 
Sbjct: 2   RLPVKVKAYPPPEIQWYKNGKLISEKNR--TKKSGHSLTIKDVTEEDAGNYTVVLTNK 57

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 194
              ++ KP  +    G S    C  DGEP P ++W ++    V  + H+I  T    +  
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLT 224
           +  +   D G Y     N  G+  A+  LT
Sbjct: 63  ISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 378
              ++ KP  +    G S    C  DGEP P ++W ++    V  + H+I  T    +  
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408
           +  +   D G Y     N  G+  A+  LT
Sbjct: 63  ISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDSG 204
           PA ++V+  C   G P P + W K+  EF   + H+I      ++  SL + ++ P D G
Sbjct: 7   PAANTVKFRCPAAGNPTPTMRWLKNGKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKG 64

Query: 205 LYRCTASNLLG 215
            Y C   N  G
Sbjct: 65  NYTCVVENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDSG 388
           PA ++V+  C   G P P + W K+  EF   + H+I      ++  SL + ++ P D G
Sbjct: 7   PAANTVKFRCPAAGNPTPTMRWLKNGKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKG 64

Query: 389 LYRCTASNLLG 399
            Y C   N  G
Sbjct: 65  NYTCVVENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 67  CLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
           C ++GHP P   WF DG  L D   + +       L L      D+G+Y C A N+ GS 
Sbjct: 5   CHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSV 64

Query: 126 ES 127
            S
Sbjct: 65  CS 66

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 251 CLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
           C ++GHP P   WF DG  L D   + +       L L      D+G+Y C A N+ GS 
Sbjct: 5   CHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSV 64

Query: 310 ES 311
            S
Sbjct: 65  CS 66

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 144 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS 203
              D  A  GSS+   CK  G P P   W K+  + +   N      G LR+  +   DS
Sbjct: 5   VISDTEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVEAGDLRITKLSLSDS 63

Query: 204 GLYRCTASNLLGEDVAEGYLTV 225
           G+Y+C A N  G   A   L V
Sbjct: 64  GMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS 387
              D  A  GSS+   CK  G P P   W K+  + +   N      G LR+  +   DS
Sbjct: 5   VISDTEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVEAGDLRITKLSLSDS 63

Query: 388 GLYRCTASNLLGEDVAEGYLTV 409
           G+Y+C A N  G   A   L V
Sbjct: 64  GMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO)

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 717 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
            NID ++G + ED + G R GP   CL+  Q K +RDG+
Sbjct: 461 DNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGD 499

TPO is a member of the animal heme peroxidase family, which is expressed in the thyroid and involved in the processing of iodine and iodine compounds. Specifically, TPO oxidizes iodide via hydrogen peroxide to form active iodine, which is then, for example, incorporated into the tyrosine residues of thyroglobulin to yield mono- and di-iodotyrosines. Length = 565

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 58  STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVY 114
              +T +  C   G+P P M W  +G     +  +      +  + L++  V  SD G Y
Sbjct: 7   PAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 66

Query: 115 NCVAQNSEGS 124
            CV +N  GS
Sbjct: 67  TCVVENEYGS 76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVY 298
              +T +  C   G+P P M W  +G     +  +      +  + L++  V  SD G Y
Sbjct: 7   PAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 66

Query: 299 NCVAQNSEGS 308
            CV +N  GS
Sbjct: 67  TCVVENEYGS 76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVL 103
            I +  P +T    G T+ I C  EG PLP++ W   G  +      T E   D + L L
Sbjct: 1   TIPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQL 60

Query: 104 NGVRESDAGVYNCVAQNSEGSAE 126
           + +         C A+N  G A 
Sbjct: 61  SNITSETQTTVTCTAENPVGQAN 83

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVL 287
            I +  P +T    G T+ I C  EG PLP++ W   G  +      T E   D + L L
Sbjct: 1   TIPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQL 60

Query: 288 NGVRESDAGVYNCVAQNSEGSAE 310
           + +         C A+N  G A 
Sbjct: 61  SNITSETQTTVTCTAENPVGQAN 83

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LVLNGVRE 108
           P   T   G T  +TC V G P P+++W  +  +L   DH  V  E   +  L + GV  
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS 67

Query: 109 SDAGVYNCVAQNSEGS 124
            D+G Y  V +N  G 
Sbjct: 68  EDSGKYGIVVKNKYGG 83

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LVLNGVRE 292
           P   T   G T  +TC V G P P+++W  +  +L   DH  V  E   +  L + GV  
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS 67

Query: 293 SDAGVYNCVAQNSEGS 308
            D+G Y  V +N  G 
Sbjct: 68  EDSGKYGIVVKNKYGG 83

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LVLNGVRE 108
           P   T   G T  +TC V G+P P++ WF +   ++  +H  V  E   +  L + GV  
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS 67

Query: 109 SDAGVYNCVAQNSEG 123
            D+G Y+   +N  G
Sbjct: 68  EDSGKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LVLNGVRE 292
           P   T   G T  +TC V G+P P++ WF +   ++  +H  V  E   +  L + GV  
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS 67

Query: 293 SDAGVYNCVAQNSEG 307
            D+G Y+   +N  G
Sbjct: 68  EDSGKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           I C  +  P P ++W      L +   +    DG + +LN V +SD G Y C A+N  G 
Sbjct: 6   IECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILN-VTKSDEGKYTCFAENFFGK 64

Query: 125 AESVA 129
           A S  
Sbjct: 65  ANSTG 69

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
           I C  +  P P ++W      L +   +    DG + +LN V +SD G Y C A+N  G 
Sbjct: 6   IECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILN-VTKSDEGKYTCFAENFFGK 64

Query: 309 AESVA 313
           A S  
Sbjct: 65  ANSTG 69

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin endoperoxide synthase and related bacterial proteins

 Score = 48.0 bits (115), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 580 IQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           I++GR   +  +N +R+  GLP   +FE+L     D  V  +L+ LYG  
Sbjct: 365 IEQGRKLRLASFNDYRKRFGLPPYTSFEELT---GDPEVAAELEELYGDV 411

Animal prostaglandin endoperoxide synthases, including prostaglandin H2 synthase and a set of similar bacterial proteins which may function as cyclooxygenases. Prostaglandin H2 synthase catalyzes the synthesis of prostaglandin H2 from arachidonic acid. In two reaction steps, arachidonic acid is converted to Prostaglandin G2, a peroxide (cyclooxygenase activity) and subsequently converted to the end product via the enzyme's peroxidase activity. Prostaglandin H2 synthase is the target of aspirin and other non-steroid anti-inflammatory drugs such as ibuprofen, which block the substrate's access to the active site and may acetylate a conserved serine residue. In humans and other mammals, prostaglandin H2 synthase (PGHS), also called cyclooxygenase (COX) is present as at least two isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2), respectively. PGHS-1 is expressed constitutively in most mammalian cells, while the expression of PGHS-2 is induced via inflammation response in endothelial cells, activated macrophages, and others. COX-3 is a splice variant of COX-1. Length = 490

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 65  ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
           + C   G+P P++TWF D   +D  S+  +     G + + N   ESD G Y CVA NS 
Sbjct: 3   MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENS-EESDQGKYECVATNSA 61

Query: 123 GSAESV 128
           G+  S 
Sbjct: 62  GTRYSA 67

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 249 ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 306
           + C   G+P P++TWF D   +D  S+  +     G + + N   ESD G Y CVA NS 
Sbjct: 3   MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENS-EESDQGKYECVATNSA 61

Query: 307 GSAESV 312
           G+  S 
Sbjct: 62  GTRYSA 67

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 21/101 (20%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 96
           P  IQ    TT   G+ + ++C  EG P+P++TW        F +G+ S D    V  +H
Sbjct: 3   PHIIQLKNETTVENGAAT-LSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH 61

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 137
               L +  V+ SD+G Y+C A +           RI GH+
Sbjct: 62  GESSLHIKDVKLSDSGRYDCEAAS-----------RIGGHQ 91

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 21/101 (20%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 280
           P  IQ    TT   G+ + ++C  EG P+P++TW        F +G+ S D    V  +H
Sbjct: 3   PHIIQLKNETTVENGAAT-LSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH 61

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 321
               L +  V+ SD+G Y+C A +           RI GH+
Sbjct: 62  GESSLHIKDVKLSDSGRYDCEAAS-----------RIGGHQ 91

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 6  SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
          S++ L IS V  E  G Y+C A N +G       +TV
Sbjct: 49 STSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 6  SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
          S++ L IS V  E  G Y+C A N +G       +TV
Sbjct: 49 STSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIH-RTGSLRLYNIGPQDSGLYRCTA 210
           G +  + C+ +G P P I+WS + A     D + + H  +G+L L ++ P D+ +Y+C A
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60

Query: 211 SNLLGEDVAEGYLTV 225
            N  G  +A  ++ V
Sbjct: 61  RNRHGNLLANAHVHV 75

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIH-RTGSLRLYNIGPQDSGLYRCTA 394
           G +  + C+ +G P P I+WS + A     D + + H  +G+L L ++ P D+ +Y+C A
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60

Query: 395 SNLLGEDVAEGYLTV 409
            N  G  +A  ++ V
Sbjct: 61  RNRHGNLLANAHVHV 75

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
           G SV + C   G P+P + W K   E  ++    + R   L L NI   +S  Y C A +
Sbjct: 1   GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNV-LELTNI--YESANYTCVAIS 57

Query: 213 LLG 215
            LG
Sbjct: 58  SLG 60

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           G SV + C   G P+P + W K   E  ++    + R   L L NI   +S  Y C A +
Sbjct: 1   GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNV-LELTNI--YESANYTCVAIS 57

Query: 397 LLG 399
            LG
Sbjct: 58  SLG 60

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 160 CKPDGE-PLPRISWSKDEAEFV---EDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASN 212
           C+   E P  R  W KD  E     + RN KI    +   L++      DSG Y C   N
Sbjct: 5   CEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64

Query: 213 LLGEDVAEG 221
           +LG D    
Sbjct: 65  ILGNDTVTA 73

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 344 CKPDGE-PLPRISWSKDEAEFV---EDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASN 396
           C+   E P  R  W KD  E     + RN KI    +   L++      DSG Y C   N
Sbjct: 5   CEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64

Query: 397 LLGEDVAEG 405
           +LG D    
Sbjct: 65  ILGNDTVTA 73

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKD------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY 206
           GSSV + C   G P   ++W K+            D N       +L + N+ P+DSG Y
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSS--ITLTISNVTPEDSGTY 58

Query: 207 RCTA 210
            C  
Sbjct: 59  TCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKD------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY 390
           GSSV + C   G P   ++W K+            D N       +L + N+ P+DSG Y
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSS--ITLTISNVTPEDSGTY 58

Query: 391 RCTA 394
            C  
Sbjct: 59  TCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 15/76 (19%)

Query: 60  GSTSRITCLVEGHPLPQMTW---FHDG-NSLDSDDHVTYEHDGFV-------LVLNGVRE 108
           G T+   C V G P P++TW    H   N +   +HV     G V       LV+   + 
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR----GNVVVTNIGQLVIYNAQP 56

Query: 109 SDAGVYNCVAQNSEGS 124
            DAG+Y C A+NS G 
Sbjct: 57  QDAGLYTCTARNSGGL 72

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 15/76 (19%)

Query: 244 GSTSRITCLVEGHPLPQMTW---FHDG-NSLDSDDHVTYEHDGFV-------LVLNGVRE 292
           G T+   C V G P P++TW    H   N +   +HV     G V       LV+   + 
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR----GNVVVTNIGQLVIYNAQP 56

Query: 293 SDAGVYNCVAQNSEGS 308
            DAG+Y C A+NS G 
Sbjct: 57  QDAGLYTCTARNSGGL 72

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
           G +  +TC+  G P+P + W   G  L  +D +    +  VL L  + ES    Y CVA 
Sbjct: 1   GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRN--VLELTNIYES--ANYTCVAI 56

Query: 120 NSEGSAESVAMI 131
           +S G  E+ A +
Sbjct: 57  SSLGMIEATAQV 68

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
           G +  +TC+  G P+P + W   G  L  +D +    +  VL L  + ES    Y CVA 
Sbjct: 1   GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRN--VLELTNIYES--ANYTCVAI 56

Query: 304 NSEGSAESVAMI 315
           +S G  E+ A +
Sbjct: 57  SSLGMIEATAQV 68

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 67  CLVEGHPLPQMTWF-HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
           C V G P+P + W   DG        +  +     L +  V   D G Y C A+N  G  
Sbjct: 5   CEVGGDPVPTVLWRKEDGELPKGRAEILDDKS---LKIRNVTAGDEGSYTCEAENMVGKI 61

Query: 126 ESVAMIRI 133
           E+ A + +
Sbjct: 62  EASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 251 CLVEGHPLPQMTWF-HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
           C V G P+P + W   DG        +  +     L +  V   D G Y C A+N  G  
Sbjct: 5   CEVGGDPVPTVLWRKEDGELPKGRAEILDDKS---LKIRNVTAGDEGSYTCEAENMVGKI 61

Query: 310 ESVAMIRI 317
           E+ A + +
Sbjct: 62  EASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 41.6 bits (97), Expect = 8e-05
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 196
            P + V P      +G  V + C    G P P ISW ++                +L L 
Sbjct: 1   KPVITVSPSPSVT-SGGGVTLTCSAEGGPPPPTISWYRNG-SISGGSGGLGSSGSTLTLS 58

Query: 197 NIGPQDSGLYRCTASN 212
           ++  +DSG Y C ASN
Sbjct: 59  SVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 41.6 bits (97), Expect = 8e-05
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 380
            P + V P      +G  V + C    G P P ISW ++                +L L 
Sbjct: 1   KPVITVSPSPSVT-SGGGVTLTCSAEGGPPPPTISWYRNG-SISGGSGGLGSSGSTLTLS 58

Query: 381 NIGPQDSGLYRCTASN 396
           ++  +DSG Y C ASN
Sbjct: 59  SVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 56  TYSTGSTSRITCLVEGHPLPQMTW------FHDGN-SLDSDDHVTYEHDGFVLVLNGVRE 108
           T        +TC  EG P+P++TW      F +G+ SLD    V        L L  V+ 
Sbjct: 12  TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL 71

Query: 109 SDAGVYNCVAQNSEG 123
           +DAG Y+C A N  G
Sbjct: 72  TDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 240 TYSTGSTSRITCLVEGHPLPQMTW------FHDGN-SLDSDDHVTYEHDGFVLVLNGVRE 292
           T        +TC  EG P+P++TW      F +G+ SLD    V        L L  V+ 
Sbjct: 12  TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL 71

Query: 293 SDAGVYNCVAQNSEG 307
           +DAG Y+C A N  G
Sbjct: 72  TDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 11/67 (16%)

Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------TGS-LRLYNIGPQDSGLYRCTA 210
           + C  +G PLPR++W K+      D   K+ +       GS L + N+  +D+G Y C A
Sbjct: 3   LRCHAEGIPLPRLTWLKNG----MDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIA 58

Query: 211 SNLLGED 217
            N  G D
Sbjct: 59  KNEAGVD 65

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 11/67 (16%)

Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------TGS-LRLYNIGPQDSGLYRCTA 394
           + C  +G PLPR++W K+      D   K+ +       GS L + N+  +D+G Y C A
Sbjct: 3   LRCHAEGIPLPRLTWLKNG----MDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIA 58

Query: 395 SNLLGED 401
            N  G D
Sbjct: 59  KNEAGVD 65

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 48  FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLNG 105
           F+  P       G    + C  EG P P++ W  DG   +L SD+      +G +L+ + 
Sbjct: 2   FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSV 61

Query: 106 VR----ESDAGVYNCVAQN 120
           V     + D G Y CVAQN
Sbjct: 62  VHSKHNKPDEGFYQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLNG 289
           F+  P       G    + C  EG P P++ W  DG   +L SD+      +G +L+ + 
Sbjct: 2   FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSV 61

Query: 290 VR----ESDAGVYNCVAQN 304
           V     + D G Y CVAQN
Sbjct: 62  VHSKHNKPDEGFYQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR---NHKIHRTGSLRLYNIGPQDSGLYRCT 209
           G +  I C  +G PLP++ W       ++ R           +L+L NI  +      CT
Sbjct: 15  GGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCT 74

Query: 210 ASNLLGEDVAEGYLTV 225
           A N +G+      +TV
Sbjct: 75  AENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR---NHKIHRTGSLRLYNIGPQDSGLYRCT 393
           G +  I C  +G PLP++ W       ++ R           +L+L NI  +      CT
Sbjct: 15  GGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCT 74

Query: 394 ASNLLGEDVAEGYLTV 409
           A N +G+      +TV
Sbjct: 75  AENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 65  ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN---GVR-ESDAGVYNCVA 118
           I C  +G P P  +W  +G    +D D  VT + +   LV+N   G + E+  GVY C A
Sbjct: 3   IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA 62

Query: 119 QNSEGSAES 127
           +N  G+A S
Sbjct: 63  RNERGAAVS 71

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 249 ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN---GVR-ESDAGVYNCVA 302
           I C  +G P P  +W  +G    +D D  VT + +   LV+N   G + E+  GVY C A
Sbjct: 3   IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA 62

Query: 303 QNSEGSAES 311
           +N  G+A S
Sbjct: 63  RNERGAAVS 71

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 73  PLPQMTWFHDGNSL--DSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA 125
           P P + W +D  +L     + VT E++        L L  ++ES+AG Y  +A NS+ S 
Sbjct: 32  PPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91

Query: 126 E 126
            
Sbjct: 92  S 92

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 257 PLPQMTWFHDGNSL--DSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA 309
           P P + W +D  +L     + VT E++        L L  ++ES+AG Y  +A NS+ S 
Sbjct: 32  PPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91

Query: 310 E 310
            
Sbjct: 92  S 92

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGF-VLVLNGVRESDAGVYNCVAQNS 121
           R+   + G P P +TW  DG  L     V  E       LV+     SD+G Y    +N 
Sbjct: 3   RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62

Query: 122 EGSAES 127
            G   +
Sbjct: 63  AGEKSA 68

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGF-VLVLNGVRESDAGVYNCVAQNS 305
           R+   + G P P +TW  DG  L     V  E       LV+     SD+G Y    +N 
Sbjct: 3   RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62

Query: 306 EGSAES 311
            G   +
Sbjct: 63  AGEKSA 68

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 44  APPIFIQRPVSTTYST-GSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGF-- 99
            PPI       T Y+  G   R+ C +   P P ++ W    N L+S     Y  +    
Sbjct: 1   GPPIITSEA--TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS 58

Query: 100 ------VLVLNGVRESD-AGVYNCVAQNSEGS 124
                  L ++  +ESD    YNC A NS GS
Sbjct: 59  PGGVLSTLTISNTQESDFQTSYNCTAWNSFGS 90

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 228 APPIFIQRPVSTTYST-GSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGF-- 283
            PPI       T Y+  G   R+ C +   P P ++ W    N L+S     Y  +    
Sbjct: 1   GPPIITSEA--TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS 58

Query: 284 ------VLVLNGVRESD-AGVYNCVAQNSEGS 308
                  L ++  +ESD    YNC A NS GS
Sbjct: 59  PGGVLSTLTISNTQESDFQTSYNCTAWNSFGS 90

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSG 204
           G +V   C+  G P P I W K+ ++ +              + +TG L + N+   D G
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 205 LYRCTASNLLGEDVAEGYLTVTGA 228
            Y C   N+ G  + + YL VT  
Sbjct: 61  YYICQTLNVAGSILTKAYLEVTDV 84

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 46  PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
           P+F ++P S  +  GS      + C     P     W  +G  +       Y      LV
Sbjct: 2   PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLV 61

Query: 103 L-NGVRESDAGVYNCVAQNSEGSAES-VAMIR 132
           + N  +  DAG Y C+A N  G+  S  A +R
Sbjct: 62  INNPQKARDAGSYQCLAINRCGTVVSREANLR 93

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 230 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
           P+F ++P S  +  GS      + C     P     W  +G  +       Y      LV
Sbjct: 2   PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLV 61

Query: 287 L-NGVRESDAGVYNCVAQNSEGSAES-VAMIR 316
           + N  +  DAG Y C+A N  G+  S  A +R
Sbjct: 62  INNPQKARDAGSYQCLAINRCGTVVSREANLR 93

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKI-HRTGSLRLYNIGPQDSGLYRCTASNL 213
           V + C  DG P P   W +D     + + N+ +  +  +L L + GP DSGLY C A N 
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 214 LGE 216
            G 
Sbjct: 61  FGS 63

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKI-HRTGSLRLYNIGPQDSGLYRCTASNL 397
           V + C  DG P P   W +D     + + N+ +  +  +L L + GP DSGLY C A N 
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 398 LGE 400
            G 
Sbjct: 61  FGS 63

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 64  RITCLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHD--GFV-LVLNGVRESDAGVYNCVAQ 119
           R+ C V G P PQ+ W  +  SL  + D V+   D  G++ L++ G  + DAG Y   A+
Sbjct: 2   RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61

Query: 120 NSEGSAESVAMIRI 133
           N  G     A + +
Sbjct: 62  NEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 248 RITCLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHD--GFV-LVLNGVRESDAGVYNCVAQ 303
           R+ C V G P PQ+ W  +  SL  + D V+   D  G++ L++ G  + DAG Y   A+
Sbjct: 2   RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61

Query: 304 NSEGSAESVAMIRI 317
           N  G     A + +
Sbjct: 62  NEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143326 cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
           R+T  V+  P P++ W  DG    ++    Y  DG+ LV+  V E DAG+Y  +  
Sbjct: 2   RLTPKVKAFPAPEVIWLKDG-LPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLG 56

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 72

>gnl|CDD|143326 cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
           R+T  V+  P P++ W  DG    ++    Y  DG+ LV+  V E DAG+Y  +  
Sbjct: 2   RLTPKVKAFPAPEVIWLKDG-LPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLG 56

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 72

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIG---PQD-SGLYRCTA 210
           I C+  G P P  SW+++   F  +++ ++     +G+L + N+     +D  G Y+C A
Sbjct: 3   IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62

Query: 211 SNLLG 215
           SN LG
Sbjct: 63  SNELG 67

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIG---PQD-SGLYRCTA 394
           I C+  G P P  SW+++   F  +++ ++     +G+L + N+     +D  G Y+C A
Sbjct: 3   IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62

Query: 395 SNLLG 399
           SN LG
Sbjct: 63  SNELG 67

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCT 209
           G +VE  C   G P P I+W  +     +     I      G+L + ++   D G Y C 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 210 ASNLLG 215
           A N  G
Sbjct: 61  AINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCT 393
           G +VE  C   G P P I+W  +     +     I      G+L + ++   D G Y C 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 394 ASNLLG 399
           A N  G
Sbjct: 61  AINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSG 388
           G +V   C+  G P P I W K+ ++ +              + +TG L + N+   D G
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 389 LYRCTASNLLGEDVAEGYLTVTG 411
            Y C   N+ G  + + YL VT 
Sbjct: 61  YYICQTLNVAGSILTKAYLEVTD 83

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 46  PIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVL 101
           P+F ++P+ T Y   ST     + C    +P P   W  +   +D ++D   Y   G  L
Sbjct: 2   PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR--YSMVGGNL 59

Query: 102 VLNGVRES-DAGVYNCVAQNSEGSAES 127
           V+N   +  DAG Y C+  N  G   S
Sbjct: 60  VINNPDKYKDAGRYVCIVSNIYGKVRS 86

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 230 PIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVL 285
           P+F ++P+ T Y   ST     + C    +P P   W  +   +D ++D   Y   G  L
Sbjct: 2   PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR--YSMVGGNL 59

Query: 286 VLNGVRES-DAGVYNCVAQNSEGSAES 311
           V+N   +  DAG Y C+  N  G   S
Sbjct: 60  VINNPDKYKDAGRYVCIVSNIYGKVRS 86

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 212
           +E+P    G P P ++WSKD          +I  T    SL + N    DSG Y  T  N
Sbjct: 4   LEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN 61

Query: 213 LLGEDVA 219
             GE  A
Sbjct: 62  PAGEKSA 68

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 396
           +E+P    G P P ++WSKD          +I  T    SL + N    DSG Y  T  N
Sbjct: 4   LEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN 61

Query: 397 LLGEDVA 403
             GE  A
Sbjct: 62  PAGEKSA 68

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial family of heme peroxidases

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 792 NIDPFVGAILEDQV-DGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQA 850
           N+D +VG + E QV  GG +G T   +  +Q  R++DGDRF+Y +  T     L Q++  
Sbjct: 485 NVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYYLS-RTAGLDLLNQLENN 543

Query: 851 SLARVI 856
           + A +I
Sbjct: 544 TFADMI 549

Animal heme peroxidases are diverse family of enzymes which are not restricted to metazoans; members are also found in fungi, and plants, and in bacteria - like this family of uncharacterized proteins. Length = 570

>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial family of heme peroxidases

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDL 575
           D  L    F P  L  E G   +LRG              +++ +TD L      + LDL
Sbjct: 321 DAFLNPVAFLPATLYAEEGAGAILRGMTRQVG------NEIDEFVTDALRNNLVGLPLDL 374

Query: 576 AAMNIQRGRDHGIPEYNAWRE 596
           AA+NI RGRD G+P  N  R 
Sbjct: 375 AALNIARGRDTGLPTLNEARA 395

Animal heme peroxidases are diverse family of enzymes which are not restricted to metazoans; members are also found in fungi, and plants, and in bacteria - like this family of uncharacterized proteins. Length = 570

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLR----LYNIGPQDSGLYR 207
           G S    C+  GEP   ISW     E  V  +   + +   +R    +YN   +D+G+Y+
Sbjct: 15  GESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYK 73

Query: 208 CTASNLLGED 217
           C A++  G +
Sbjct: 74  CVATDAKGTE 83

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLR----LYNIGPQDSGLYR 391
           G S    C+  GEP   ISW     E  V  +   + +   +R    +YN   +D+G+Y+
Sbjct: 15  GESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYK 73

Query: 392 CTASNLLGED 401
           C A++  G +
Sbjct: 74  CVATDAKGTE 83

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRCTASNLLG 215
           + C   G P P I+W KD        N +I   R+G+L++ N    D G Y C A+N  G
Sbjct: 3   MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRCTASNLLG 399
           + C   G P P I+W KD        N +I   R+G+L++ N    D G Y C A+N  G
Sbjct: 3   MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA--EFVEDRNHKIHRTGSLRLYN 197
             + +P D+ A  G  V + C  +GEP P+I W KD      V D   +    GSL + +
Sbjct: 1   WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60

Query: 198 I-----GPQDSGLYRCTASN 212
           +        D G Y+C A N
Sbjct: 61  VVHSKHNKPDEGFYQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 324 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA--EFVEDRNHKIHRTGSLRLYN 381
             + +P D+ A  G  V + C  +GEP P+I W KD      V D   +    GSL + +
Sbjct: 1   WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60

Query: 382 I-----GPQDSGLYRCTASN 396
           +        D G Y+C A N
Sbjct: 61  VVHSKHNKPDEGFYQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRC 208
           A  G  +++ C+   + +  I+W+KD  +  E+   +I  TG  +++ +  P+DSGLY C
Sbjct: 6   AHPGDLLQLRCRLR-DDVQSINWTKDGVQLGENNRTRI--TGEEVQIKDAVPRDSGLYAC 62

Query: 209 TASNLLGED 217
             S+  G D
Sbjct: 63  VTSSPSGSD 71

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRC 392
           A  G  +++ C+   + +  I+W+KD  +  E+   +I  TG  +++ +  P+DSGLY C
Sbjct: 6   AHPGDLLQLRCRLR-DDVQSINWTKDGVQLGENNRTRI--TGEEVQIKDAVPRDSGLYAC 62

Query: 393 TASNLLGED 401
             S+  G D
Sbjct: 63  VTSSPSGSD 71

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTAS 211
           G    + CK  G+P P I W   + + + + +  + +  G+L +     +D+G + C AS
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60

Query: 212 NLLGEDVA 219
           N  GE  A
Sbjct: 61  NAAGEATA 68

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTAS 395
           G    + CK  G+P P I W   + + + + +  + +  G+L +     +D+G + C AS
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60

Query: 396 NLLGEDVA 403
           N  GE  A
Sbjct: 61  NAAGEATA 68

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCV 117
           G T   TC+  G P P + W  +   +     V+   +G    L +  V+ESD G Y C 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 118 AQNSEG 123
           A N+ G
Sbjct: 61  AINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCV 301
           G T   TC+  G P P + W  +   +     V+   +G    L +  V+ESD G Y C 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 302 AQNSEG 307
           A N+ G
Sbjct: 61  AINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase and related enzymes

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 578 MNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           + I + R+  +   N +R++ GL    TFED+     D  V + L+ LYGHP
Sbjct: 378 LGILQAREWNVATLNEFRKFFGLKPYETFEDINS---DPEVAEALELLYGHP 426

These fungal enzymes, related to animal heme peroxidases, catalyze the oxygenation of linoleate and similar targets. Linoleate (8R)-dioxygenase, also called linoleate:oxygen 7S,8S-oxidoreductase, generates (9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a product. Other members are 5,8-linoleate dioxygenase (LDS, ppoA) and linoleate 10R-dioxygenase (ppoC), involved in the biosynthesis of oxylipins. Length = 550

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDG---FVLVLNGVRESDAGVYNCVAQ 119
           R+ C V   P PQ+ W  +   L  + D ++   D      L++    + DAG Y   A 
Sbjct: 2   RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61

Query: 120 NSEGSAESVA 129
           N  G     A
Sbjct: 62  NEAGVVSCNA 71

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDG---FVLVLNGVRESDAGVYNCVAQ 303
           R+ C V   P PQ+ W  +   L  + D ++   D      L++    + DAG Y   A 
Sbjct: 2   RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61

Query: 304 NSEGSAESVA 313
           N  G     A
Sbjct: 62  NEAGVVSCNA 71

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSGLYR 207
           V + C  +G P P I W   +        H        ++   GSL + ++  +DSG Y 
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 208 CTASNLLGEDVAEG-YLTV 225
           C  SN +G D ++   LTV
Sbjct: 61  CKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSGLYR 391
           V + C  +G P P I W   +        H        ++   GSL + ++  +DSG Y 
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 392 CTASNLLGEDVAEG-YLTV 409
           C  SN +G D ++   LTV
Sbjct: 61  CKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 69  VEGHPLPQMTWFHDGNSLDSDDHV----------TYEHDGFVLVLNGVRESDAGVYNCVA 118
           V G+P P +TW+H+G  L+  D++            E+ G  L  +     + G Y  VA
Sbjct: 7   VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHG-CLQFDNPTHVNNGNYTLVA 65

Query: 119 QNSEGSAESVAMIRINGH 136
            N  G         I+ H
Sbjct: 66  SNEYGQDSK----SISAH 79

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 253 VEGHPLPQMTWFHDGNSLDSDDHV----------TYEHDGFVLVLNGVRESDAGVYNCVA 302
           V G+P P +TW+H+G  L+  D++            E+ G  L  +     + G Y  VA
Sbjct: 7   VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHG-CLQFDNPTHVNNGNYTLVA 65

Query: 303 QNSEGSAESVAMIRINGH 320
            N  G         I+ H
Sbjct: 66  SNEYGQDSK----SISAH 79

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 7  STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
          +  L IS VQ +  G+Y+CVA N AG       +TV
Sbjct: 55 TYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           I C  +  P P+ +W      L ++  ++   DG + +LN + + D G Y C A+N+ G 
Sbjct: 6   IECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILN-ITKLDEGSYTCFAENNRGK 64

Query: 125 AESVAMIRI 133
           A S  ++ +
Sbjct: 65  ANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
           I C  +  P P+ +W      L ++  ++   DG + +LN + + D G Y C A+N+ G 
Sbjct: 6   IECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILN-ITKLDEGSYTCFAENNRGK 64

Query: 309 AESVAMIRI 317
           A S  ++ +
Sbjct: 65  ANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
           G    + C   G+P P ++W  +G  ++ +    + + DG  ++ + V+E  + VY C A
Sbjct: 1   GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNA 60

Query: 119 QNSEG 123
            N  G
Sbjct: 61  SNEYG 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
           G    + C   G+P P ++W  +G  ++ +    + + DG  ++ + V+E  + VY C A
Sbjct: 1   GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNA 60

Query: 303 QNSEG 307
            N  G
Sbjct: 61  SNEYG 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 5  RSSTELVISGVQREHGGRYSCVAGNPAGV 33
            S+ L IS V  E  G Y+CVA N AG 
Sbjct: 40 SGSSTLTISNVTLEDSGTYTCVASNSAGT 68

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 153 GSSVEIPCKPDGEPLPRISWSK--DEAEFVE-DRN-------HKIHRTGSLRLYNIGPQD 202
             +  + CK +GEP+P I+W +  D   F E D++          H   SL + ++   D
Sbjct: 16  NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSD 75

Query: 203 SGLYRCTASNLLGEDVAEGYLTV 225
           SG Y C A++ +G      YL +
Sbjct: 76  SGRYDCEAASRIGGHQKSMYLDI 98

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 337 GSSVEIPCKPDGEPLPRISWSK--DEAEFVE-DRN-------HKIHRTGSLRLYNIGPQD 386
             +  + CK +GEP+P I+W +  D   F E D++          H   SL + ++   D
Sbjct: 16  NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSD 75

Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
           SG Y C A++ +G      YL +
Sbjct: 76  SGRYDCEAASRIGGHQKSMYLDI 98

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 1  TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
           +   SST LVI   +R   G+Y+    NPAG     ++V V
Sbjct: 33 IETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 6  SSTELVISGVQREHGGRYSCVAGNPAG 32
          S + L I  V  E  G Y+CVA N AG
Sbjct: 37 SGSTLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	940
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG2408|consensus	719		100.0
PF03098	530	An_peroxidase: Animal haem peroxidase; InterPro: I	100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
PLN02283	633	alpha-dioxygenase	99.97
KOG4194|consensus	873		99.95
KOG4194|consensus	873		99.95
KOG2408|consensus	719		99.94
PHA02785	326	IL-beta-binding protein; Provisional	99.94
PHA02785	326	IL-beta-binding protein; Provisional	99.94
PHA02826	227	IL-1 receptor-like protein; Provisional	99.74
PHA02826	227	IL-1 receptor-like protein; Provisional	99.72
KOG3515|consensus	741		99.68
KOG3515|consensus	741		99.64
PF03098	530	An_peroxidase: Animal haem peroxidase; InterPro: I	99.63
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.54
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.5
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.49
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.44
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.43
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.43
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.39
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.39
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.37
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.36
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.35
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.35
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.35
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.35
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.34
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.33
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.33
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.33
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.33
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.33
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.32
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.32
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.31
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.31
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.31
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.31
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.31
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.3
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.3
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.3
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.3
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.3
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.3
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.29
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.29
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.29
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.28
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.28
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.28
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.28
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.27
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.27
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.26
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.26
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.26
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.26
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.26
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.26
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.26
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.25
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.25
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.24
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.24
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.24
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.24
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.24
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.23
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.23
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.23
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.23
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.22
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.22
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.22
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.22
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.22
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.22
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.22
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.21
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.21
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.21
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.21
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.21
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.21
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.21
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.21
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.2
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.2
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.2
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.2
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.2
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.2
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.19
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.19
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.19
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.19
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.19
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.18
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.18
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.17
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.17
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.17
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.17
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.17
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.16
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.16
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.16
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.15
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.15
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.15
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.14
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.14
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.14
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.13
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.13
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.13
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.13
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.13
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.12
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.12
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.12
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.11
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.11
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.11
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.1
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.1
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.1
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.1
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.09
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.08
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.07
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.07
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.06
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.06
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.06
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.06
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.05
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.05
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.05
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.05
PLN02283	633	alpha-dioxygenase	99.05
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.04
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.04
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.03
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.03
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.03
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.02
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.02
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.02
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.01
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.01
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.0
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.99
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.98
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.97
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.97
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.94
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.93
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.93
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.93
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.93
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.92
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.92
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.92
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.91
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.9
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.9
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.9
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.9
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.89
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.87
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.87
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.87
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.84
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.82
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.82
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.78
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.78
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.77
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.77
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.77
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.77
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.77
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.75
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.75
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.74
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.73
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.73
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.72
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.7
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.69
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.68
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.68
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.67
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.67
smart00409	86	IG Immunoglobulin.	98.64
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.64
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.64
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.63
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.62
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.6
smart00409	86	IG Immunoglobulin.	98.6
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.6
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.59
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.59
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.55
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.53
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.53
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.51
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.5
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.49
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.43
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.42
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.41
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.4
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.37
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.36
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.35
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.34
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.34
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.31
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.3
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.3
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.27
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.27
PHA03376	221	BARF1; Provisional	98.24
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.23
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.22
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.19
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.17
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.17
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.17
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.12
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.1
PHA03376	221	BARF1; Provisional	98.1
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.08
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.02
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.02
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.0
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.99
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.97
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.95
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.95
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.93
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.92
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.9
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.89
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.88
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.87
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.85
PHA03269	566	envelope glycoprotein C; Provisional	97.81
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.8
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.8
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.79
PHA03270	466	envelope glycoprotein C; Provisional	97.77
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.77
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.76
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.76
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.76
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.75
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.74
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.73
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.72
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.69
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.68
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.67
PHA03273	486	envelope glycoprotein C; Provisional	97.65
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.63
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.63
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.62
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.62
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.61
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.58
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.57
PHA03270	466	envelope glycoprotein C; Provisional	97.54
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.52
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.52
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.51
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.51
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.5
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.49
PHA03273	486	envelope glycoprotein C; Provisional	97.49
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.46
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.46
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.46
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.46
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.44
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.44
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.44
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.44
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.44
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.44
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.43
PHA03269	566	envelope glycoprotein C; Provisional	97.42
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.41
PHA03271	490	envelope glycoprotein C; Provisional	97.41
KOG1480|consensus	909		97.39
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.39
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.39
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.38
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.38
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.36
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.35
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.3
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.3
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.24
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.24
KOG1480|consensus	909		97.22
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.22
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.22
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.21
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.19
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.19
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.18
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.17
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.14
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.13
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.11
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.05
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.01
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.98
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.95
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.94
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	96.91
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.86
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.8
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.78
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.75
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.75
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	96.73
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.72
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.71
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.7
PHA03271	490	envelope glycoprotein C; Provisional	96.69
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.68
smart00407	75	IGc1 Immunoglobulin C-Type.	96.67
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.64
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.6
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.59
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.46
KOG0613|consensus	1205		96.46
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.43
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.4
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.37
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.35
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.3
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.28
KOG0613|consensus	1205		96.25
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.24
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.2
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.18
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.17
smart00407	75	IGc1 Immunoglobulin C-Type.	96.13
smart00406	81	IGv Immunoglobulin V-Type.	96.06
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.01
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.88
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	95.8
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	95.63
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	95.61
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	95.56
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.52
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	95.5
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.38
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.36
smart00406	81	IGv Immunoglobulin V-Type.	95.36
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.31
PHA02633	63	hypothetical protein; Provisional	95.28
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	95.23
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.12
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	94.95
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.93
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	94.92
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.78
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	94.67
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	94.19
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	93.88
PHA02633	63	hypothetical protein; Provisional	93.85
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	93.81
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	93.74
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	93.58
PHA02914	500	Immunoglobulin-like domain protein; Provisional	93.49
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	93.46
KOG4597|consensus	560		92.71
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	92.5
PRK14081	667	triple tyrosine motif-containing protein; Provisio	91.82
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	91.73
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	91.68
PHA02982	251	hypothetical protein; Provisional	91.11
PHA02982	251	hypothetical protein; Provisional	90.57
PHA03283	542	envelope glycoprotein E; Provisional	90.25
KOG1026|consensus	774		90.07
KOG4597|consensus	560		89.58
PHA03042	286	CD47-like protein; Provisional	89.16
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	89.16
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	88.67
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	88.01
PHA03042	286	CD47-like protein; Provisional	87.71
PHA03282	540	envelope glycoprotein E; Provisional	86.16
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	84.65
PRK14081	667	triple tyrosine motif-containing protein; Provisio	84.59
KOG1026|consensus	774		84.07
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	82.39
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	82.34
PHA03286	492	envelope glycoprotein E; Provisional	81.81

>KOG3513|consensus

Probab=100.00  E-value=3.6e-49  Score=469.50  Aligned_cols=444  Identities=27%  Similarity=0.449  Sum_probs=365.5

Q ss_pred             ccEEEECCCC-CCCCeEEEEEEEcCCceEE-EEEEEEEeCCCeEE-eCCCcEEEecCCeEEEEEEee-ccCCCeEEEEEC
Q psy11143          7 STELVISGVQ-REHGGRYSCVAGNPAGVYR-GDLHVTVNAPPIFI-QRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHD   82 (940)
Q Consensus         7 ~~tL~I~~v~-~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~pP~~~-~~p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kd   82 (940)
                      .++|.|.+.. ..|+|.|+|.|+|..|.+. .++.|....-+.|. .....+.+.+|+.+.|.|... +.|.+.|.|..+
T Consensus        95 ~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~  174 (1051)
T KOG3513|consen   95 GGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLN  174 (1051)
T ss_pred             cCceEecCCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhc
Confidence            6789999998 7899999999999999765 45777766555565 556778999999999999974 578889999877


Q ss_pred             CEee-cCCC--CeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE---EEEEEEe-----cccCCeeEecC-Cceee
Q psy11143         83 GNSL-DSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES---VAMIRIN-----GHRAPRLVVKP-FDMRA  150 (940)
Q Consensus        83 g~~I-~~~~--~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~---~~~L~V~-----~~~~P~~~~~p-~~~~v  150 (940)
                      +.+- ...+  ++....+|. |.|.+|..+|.+.|.|.|.+.......   ...|++.     ...+|.+...+ .+...
T Consensus       175 ~~~~~~~~~~~r~~~~~~G~-Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a  253 (1051)
T KOG3513|consen  175 EFPHFVQIDNRRVFSQENGN-LYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETA  253 (1051)
T ss_pred             cCCcccccCcceeEecccce-EEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccc
Confidence            6432 2222  333334444 599999999999999999984332221   4455552     22346555543 36778


Q ss_pred             cCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCC
Q psy11143        151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP  230 (940)
Q Consensus       151 ~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p  230 (940)
                      ..|+.+.|+|.+.|+|.|+|.|.|.+.............+.+|.|.+++.+|+|.|+|.|+|..|.......+.|. .+|
T Consensus       254 ~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~-a~P  332 (1051)
T KOG3513|consen  254 LKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY-APP  332 (1051)
T ss_pred             cCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe-cCc
Confidence            8999999999999999999999997764333333334456689999999999999999999999999999999998 899


Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCc---eEEeecCeEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~---~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .++..+.+..+..|++++|.|.+.|.|.|+|+|++||.++....+   ..+  ....|+|.++...|+|.|.|.|+|..|
T Consensus       333 ~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i--~~g~L~is~v~~~dsg~YQC~A~Nk~G  410 (1051)
T KOG3513|consen  333 YWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI--DDGTLIISNVQESDSGVYQCIAENKYG  410 (1051)
T ss_pred             hhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE--eCCEEEEEecccccCeEEEeeeecccc
Confidence            999999999999999999999999999999999999999986655   444  333599999999999999999999999


Q ss_pred             CceeEEEEEEeeccCCeEEEcCCce--eecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCC
Q psy11143        308 SAESVAMIRINGHRAPRLVVKPFDM--RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ  385 (940)
Q Consensus       308 s~~~s~~l~V~~~~~P~i~~~p~~~--~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~  385 (940)
                      ...+++.|.|.. .+|.+...|...  .+..|.++.|.|.+.+.|.|.+.|.|++..+..++++.+..+|+|.|.+++.+
T Consensus       411 ~i~anA~L~V~a-~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~  489 (1051)
T KOG3513|consen  411 TIYANAELKVLA-SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRS  489 (1051)
T ss_pred             eEeeeeEEEEEc-cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcc
Confidence            999999999986 667777666554  67899999999999999999999999999788899999999999999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEecCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCc
Q psy11143        386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSN  465 (940)
Q Consensus       386 D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~  465 (940)
                      |+|.|+|.|+|..|.+...+.|.|+.++.+..+|....      ...+    ++++..|.+.+|+.+..++.|.+||++.
T Consensus       490 DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~------v~~g----~~v~l~Ce~shD~~ld~~f~W~~nG~~i  559 (1051)
T KOG3513|consen  490 DAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTD------VKVG----ESVTLTCEASHDPSLDITFTWKKNGRPI  559 (1051)
T ss_pred             cCcEEEEEEEcccCccceEEEEEEecCceEEeccchhh------hccC----ceEEEEeecccCCCcceEEEEEECCEEh
Confidence            99999999999999999999999999987655443222      1222    3566789999999999999999999544

>KOG3513|consensus

Probab=100.00  E-value=1.9e-45  Score=437.82  Aligned_cols=404  Identities=30%  Similarity=0.521  Sum_probs=345.2

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCce---EEEEEEEEE-------eCCCeEEe-CCCcEEEecCCeEEEEEEeeccCC
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGV---YRGDLHVTV-------NAPPIFIQ-RPVSTTYSTGSTSRITCLVEGHPL   74 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~---~~~~v~l~V-------~~pP~~~~-~p~~~~V~eGesv~L~C~v~g~P~   74 (940)
                      ..+.|.|.++..+|.+.|.|.|.+....   ...-+.|++       ..+|.+.. .|.......|+.|.|.|.+.|+|.
T Consensus       191 ~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~  270 (1051)
T KOG3513|consen  191 ENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPT  270 (1051)
T ss_pred             ccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCC
Confidence            4679999999999999999999984432   122244444       23555544 455677889999999999999999


Q ss_pred             CeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCC
Q psy11143         75 PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS  154 (940)
Q Consensus        75 p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge  154 (940)
                      |+|.|+|.+... ...+.++...+.+|.|.+++.+|+|.|+|.|+|..|.......|.|.  ..|.++..+.+..+..|+
T Consensus       271 P~i~W~k~~g~~-~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~--a~P~w~~~~~d~~~~~gs  347 (1051)
T KOG3513|consen  271 PQIKWRKVDGKP-PPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY--APPYWLQKPQDTEADTGS  347 (1051)
T ss_pred             CcEEEEeCCCCC-CCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe--cCchhhcccceeEecCCC
Confidence            999999988752 24456666777889999999999999999999999976667767665  468899999999999999


Q ss_pred             cEEEEEEeCCCCCCeEEEeeCCeeccccCc--eEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCee
Q psy11143        155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF  232 (940)
Q Consensus       155 ~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~--~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~  232 (940)
                      +++|.|.+.|.|.|.|+|.+||.++....+  ......+.|.|.+++..|+|.|.|.|+|..|...+++.|.|...+|.+
T Consensus       348 ~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f  427 (1051)
T KOG3513|consen  348 NVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVF  427 (1051)
T ss_pred             CeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCC
Confidence            999999999999999999999999976544  133456799999999999999999999999999999999999887888


Q ss_pred             eeCCCee--EEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        233 IQRPVST--TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       233 ~~~p~~~--~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      ...+...  .+..|..+.|.|...+.|.|.+.|.|++..+..+.++.+..+|+ |.|.+++.+|+|.|+|.|+|..|..+
T Consensus       428 ~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGt-L~I~n~t~~DaG~YtC~A~N~~G~a~  506 (1051)
T KOG3513|consen  428 PLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGT-LEISNVTRSDAGKYTCVAENKLGKAE  506 (1051)
T ss_pred             CCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCc-EEecccCcccCcEEEEEEEcccCccc
Confidence            8776555  67789999999999999999999999999888889999999998 99999999999999999999999999


Q ss_pred             eEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC--eEEEEeCCeeecc---CCcEEEee---eceEEEecC
Q psy11143        311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVE---DRNHKIHR---TGSLRLYNI  382 (940)
Q Consensus       311 ~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p--~i~W~k~g~~i~~---~~~~~i~~---~~sL~I~~v  382 (940)
                      ..+.|.|+  .+++|...|....+..|+.++|.|.+.-.|..  .|.|.+||..+..   ...+....   ++.|+|.++
T Consensus       507 ~~~~L~Vk--d~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv  584 (1051)
T KOG3513|consen  507 STGNLIVK--DATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANV  584 (1051)
T ss_pred             eEEEEEEe--cCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEee
Confidence            99999887  58999999999999999999999999877665  8999999997642   22333221   245999999


Q ss_pred             CCCCCeEEEEEEEeCCeeEEEEEEEEEecCCCC
Q psy11143        383 GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV  415 (940)
Q Consensus       383 ~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~  415 (940)
                      +..|+|.|+|+|.-..-+.++.+.|.|+++|.+
T Consensus       585 ~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgp  617 (1051)
T KOG3513|consen  585 SLEDSGKYTCVAQTALDSASARADLLVRGPPGP  617 (1051)
T ss_pred             ccccCceEEEEEEEeecchhcccceEEecCCCC
Confidence            999999999999998888999999999998764

>KOG2408|consensus

Probab=100.00  E-value=7.1e-46  Score=441.34  Aligned_cols=221  Identities=48%  Similarity=0.881  Sum_probs=199.8

Q ss_pred             cceeeeccchhhhhheeeEEEEeeccccccc--ccccccccccCcccccccCCCCchhhccccCcCccCCCCccccHHHH
Q psy11143        484 ARTVVRAADVYERTLSHIKKHIQAGVKMNLS--EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELT  561 (940)
Q Consensus       484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (940)
                      .++|+.||+||||+++.-...+...+...+.  .++.+++.||+|+.++.+||+|++++||+++++++.+ |++++.+++
T Consensus       462 sneFataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~-d~~~~~~i~  540 (719)
T KOG2408|consen  462 SNEFATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQPAKMPD-DQLLNGEIT  540 (719)
T ss_pred             hhhhhHHHHhhhcccCchhhhhhcccCcccccccCchhhhhhcchhhhhhccChhHHHHHHHhchhhccc-chhcCHHHH
Confidence            6899999999999995322222222211222  3788999999999999999999999999999999987 899999999


Q ss_pred             Hhhhccccchh-hhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChh
Q psy11143        562 DKLFTTFHAVS-LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPR  640 (940)
Q Consensus       562 ~~~~~~~~~~~-~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (940)
                      ++||...+..+ +||+|+|||||||||||+||+||++|||+++++||||.++|. +.++.+|+++|++|+          
T Consensus       541 ~~lf~~~~~~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~-~~~~~kl~~lY~~~d----------  609 (719)
T KOG2408|consen  541 ERLFVKTDEDGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIE-PEIINKLRTLYGTPD----------  609 (719)
T ss_pred             HHHhhhcCcccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhh-HHHHHHHHHhcCCch----------
Confidence            99999987776 999999999999999999999999999999999999999998 999999999999988          


Q ss_pred             HHHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCC
Q psy11143        641 QIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNID  720 (940)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  720 (940)
                                                                                                   +| 
T Consensus       610 -----------------------------------------------------------------------------di-  611 (719)
T KOG2408|consen  610 -----------------------------------------------------------------------------DI-  611 (719)
T ss_pred             -----------------------------------------------------------------------------hh-
Confidence                                                                                         54 


Q ss_pred             cccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCccccce
Q psy11143        721 PFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAI  800 (940)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (940)
                                                                                               |||||++
T Consensus       612 -------------------------------------------------------------------------DL~vG~~  618 (719)
T KOG2408|consen  612 -------------------------------------------------------------------------DLYVGLL  618 (719)
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     4999999


Q ss_pred             eccccCCCCCCcchhhhhhhhhhhcccCCcccccC--CCCCChhHHhHhhhceeeeeeecCCCceeeEE
Q psy11143        801 LEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN--PSTFKPAQLTQIKQASLARVICDSGDRLTEVR  867 (940)
Q Consensus       801 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (940)
                      +|++++|+++||||.|||++||+|+|+||||||||  ++.||++||.||++.+|++|||+|++.+..+.
T Consensus       619 ~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen~~~~~Ft~~QL~ei~k~sLariiC~N~~~~~~~~  687 (719)
T KOG2408|consen  619 LEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYENFNPGVFTPEQLEEIRKVSLARIICDNGTKITKVS  687 (719)
T ss_pred             ccccCCCceecccHHHHHHHHHHHHhccCceeecCCCCCccCHHHHHHHHHhhchheeecCCccccccc
Confidence            99999999999999999999999999999999999  99999999999999999999999988787776

>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions

Probab=100.00  E-value=3.8e-42  Score=407.05  Aligned_cols=223  Identities=44%  Similarity=0.829  Sum_probs=188.5

Q ss_pred             cceeeeccchhhhhheeeEEEEeecccccccccccccccccCcc-cccccCCCCchhhccccCcCccCCCCccccHHHHH
Q psy11143        484 ARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPW-RLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTD  562 (940)
Q Consensus       484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (940)
                      ..||+.||+||||+++.-...+...+.-...+.+.|.++||+|. .++.+++++.+++||..|+++..+....++++|++
T Consensus       302 ~~EFa~aA~RfgHs~i~~~~~~~~~~~~~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~~d~~~~~~~~l~~  381 (530)
T PF03098_consen  302 SNEFAAAAYRFGHSMIPDTYDRWDENFEIPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQKVDNPRFLVDDLRN  381 (530)
T ss_dssp             BTTH-HHHGGGGGGGS-SEEEEBTTTSBETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEHHBTTBHSHHHHHT
T ss_pred             hHHHHHHHHHhhheeehhhhhhccccCCcccccccccccccCcchhhhhccchHHHHhHHhhCccccccHHHHhhhHhhc
Confidence            68999999999999964332222111100245789999999998 78889999999999999999987433889999999


Q ss_pred             hhhccccchh-hhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChhH
Q psy11143        563 KLFTTFHAVS-LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQ  641 (940)
Q Consensus       563 ~~~~~~~~~~-~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (940)
                      +||+.....+ +||+|+|||||||||||+||+||++|||+++++|+||++.+.++.++++|+++|++++           
T Consensus       382 ~lf~~~~~~~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vd-----------  450 (530)
T PF03098_consen  382 HLFGPRNVPGSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRALYGHVD-----------  450 (530)
T ss_dssp             SEESTTSSSEEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHHHSSGG-----------
T ss_pred             ccccccCCcchhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHhccchh-----------
Confidence            9997765554 5999999999999999999999999999999999999999999999999999998877           


Q ss_pred             HHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCCc
Q psy11143        642 IELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDP  721 (940)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  721 (940)
                                                                                                      
T Consensus       451 --------------------------------------------------------------------------------  450 (530)
T PF03098_consen  451 --------------------------------------------------------------------------------  450 (530)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCcccccee
Q psy11143        722 FVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAIL  801 (940)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (940)
                                                                                            +||||+|+|+
T Consensus       451 ----------------------------------------------------------------------dvDL~vG~la  460 (530)
T PF03098_consen  451 ----------------------------------------------------------------------DVDLWVGGLA  460 (530)
T ss_dssp             ----------------------------------------------------------------------GSBHHHHHHH
T ss_pred             ----------------------------------------------------------------------cccccceeee
Confidence                                                                                  4559999999


Q ss_pred             ccccCCCCCCcchhhhhhhhhhhcccCCcccccCCCCCChhHHhHhhhceeeeeeecCCCceeeEE
Q psy11143        802 EDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVR  867 (940)
Q Consensus       802 e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (940)
                      |++++|+++||||.|||++||.|+|+||||||||++.||+.||++|++++|++|||+|++.+++||
T Consensus       461 E~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen~~~ft~~ql~~i~~~tla~iic~n~~~~~~iq  526 (530)
T PF03098_consen  461 EKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYENPGSFTPEQLEEIRKTTLARIICDNTDDITRIQ  526 (530)
T ss_dssp             S-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTSCTTCTHHHHHHHTTT-HHHHHHHHSTS-SEEE
T ss_pred             eccccCCCCCHHHHhHHHHHHHHHHhcCcccccCcCcCCHHHHHHHHHCCHHHHHHhcCCccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....

>KOG4222|consensus

Probab=100.00  E-value=8.7e-37  Score=358.59  Aligned_cols=393  Identities=33%  Similarity=0.576  Sum_probs=334.1

Q ss_pred             CCeEEEEEEEcCCceEEE-EEEEEEe-CCCeEEeCCCcEEEecCCeEEEEEEe-eccCCCeEEEEECCEeecCCCC-eEE
Q psy11143         19 HGGRYSCVAGNPAGVYRG-DLHVTVN-APPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDH-VTY   94 (940)
Q Consensus        19 DsG~Y~C~a~n~~g~~~~-~v~l~V~-~pP~~~~~p~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~~~~-~~~   94 (940)
                      |.|.|+|.+.|..|...+ ...|.|. .+..|.+.|.++.+..|+.++|.|.- .|.|.+.|.|.|+|+++..... .+.
T Consensus       103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~  182 (1281)
T KOG4222|consen  103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA  182 (1281)
T ss_pred             CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence            999999999999987654 2344433 25578888999999999999999996 6799999999999999873222 222


Q ss_pred             EeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEe
Q psy11143         95 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS  173 (940)
Q Consensus        95 ~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~  173 (940)
                      ...+..|.|.++..+|+|+|.|++.|..|..++ .++|.|.+  .|.+...+.+..|.+|..+.+.|.+.|.|.|.+.|.
T Consensus       183 lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e--~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwk  260 (1281)
T KOG4222|consen  183 LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE--KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWK  260 (1281)
T ss_pred             EecCCcEEEeccccCCCceeeeeecccccccccccceeeecc--CCccccccccceeecccccccccccCCCCCCceeee
Confidence            244555699999999999999999999999887 77888875  678999999999999999999999999999999999


Q ss_pred             eCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEE
Q psy11143        174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV  253 (940)
Q Consensus       174 k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v  253 (940)
                      +++..++.........+.+|.|.++++.|.|.|.|.+.|..|...+...++|. .+|.+...+....+..|..++|.|.+
T Consensus       261 k~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~-apP~f~kkp~dq~v~lg~~vt~pc~~  339 (1281)
T KOG4222|consen  261 KDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ-APPSFGKKPRDQKVALGGTVTFPCET  339 (1281)
T ss_pred             ccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe-cCcccccccCccccccCceEEeeeec
Confidence            98888877655555556899999999999999999999999999999999999 88999999999999999999999999


Q ss_pred             eeeCCCeEEEEECCeec--------CCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe-----ec
Q psy11143        254 EGHPLPQMTWFHDGNSL--------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN-----GH  320 (940)
Q Consensus       254 ~G~P~p~ItW~k~g~~l--------~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~-----~~  320 (940)
                      .|+|.|.+.|.+.|...        ..+.+..+...+. |.|.+++..|.|.|.|...+..++......+.+.     ..
T Consensus       340 ~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~-L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~r  418 (1281)
T KOG4222|consen  340 LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGT-LTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSR  418 (1281)
T ss_pred             CCCCCcceEEeccCcceecccCCCCCcCccceecCCCC-cccccccccccceEeecccccccccccceeEEEEeeeccCC
Confidence            99999999999987542        2344556666674 9999999999999999988888777554444332     25


Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      .+|.|...+.+++..++..+.|.|.+.|.|.|.+.|.+++-.+.. +.+..+...++|+|.+....|.|.|+|.|.+..|
T Consensus       419 Ppp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~g  498 (1281)
T KOG4222|consen  419 PPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESG  498 (1281)
T ss_pred             CCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCccc
Confidence            677888889999999999999999999999999999999876643 3566666778999999999999999999999999


Q ss_pred             eEEEEEEEEEecCCCC
Q psy11143        400 EDVAEGYLTVTGENSV  415 (940)
Q Consensus       400 ~~~~s~~L~V~~~~~~  415 (940)
                      +...++.|.|......
T Consensus       499 es~wSatl~v~~~~~s  514 (1281)
T KOG4222|consen  499 ESTWSATLTVEKAGSS  514 (1281)
T ss_pred             ccccceeeEhhhcCcc
Confidence            9999999999877654

>KOG4222|consensus

Probab=100.00  E-value=6.5e-36  Score=351.26  Aligned_cols=450  Identities=27%  Similarity=0.479  Sum_probs=350.0

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEE-eeceEEEEccc----ccCCCeEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYE-HDGFVLVLNGV----RESDAGVYNC  116 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~-~~gs~L~I~~v----~~~DsG~YtC  116 (940)
                      .+|.++.+|.+..|..|+.++|.|.++|.|+|+|+|||+|..+...+  ..++. .+|+++.+.-+    ...|.|.|+|
T Consensus        30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c  109 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC  109 (1281)
T ss_pred             CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence            47899999999999999999999999999999999999996543322  23333 66666544433    1238999999


Q ss_pred             EEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeecc--ccCceEEeeece
Q psy11143        117 VAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFV--EDRNHKIHRTGS  192 (940)
Q Consensus       117 ~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~--~~~~~~~~~~~s  192 (940)
                      ++.|..|...+ .+.|.+... .-.|.+.+....+..|+.+.|+|.- .|.|.+.+.|.|+|+.+.  ......+...+.
T Consensus       110 vasn~~g~avSr~a~L~vavl-rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~  188 (1281)
T KOG4222|consen  110 VASNRLGEAVSRGASLIVAVL-RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGN  188 (1281)
T ss_pred             eecCccceeeecCceEEEEEe-chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCc
Confidence            99999998877 455555443 2356677788889999999999975 479999999999999886  445566678889


Q ss_pred             EEEeecccCCCceEEEEEEcCCcce-eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecC
Q psy11143        193 LRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD  271 (940)
Q Consensus       193 L~I~~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~  271 (940)
                      |.|.+++..|+|.|.|++.|.+|.. +..+.|+|. .+|.+...+....+..|..+.+.|.+.|.|.|.+.|.+++..++
T Consensus       189 LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P  267 (1281)
T KOG4222|consen  189 LLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLP  267 (1281)
T ss_pred             EEEeccccCCCceeeeeecccccccccccceeeec-cCCccccccccceeecccccccccccCCCCCCceeeeccCCCCC
Confidence            9999999999999999999999974 567788888 78889999999999999999999999999999999999888777


Q ss_pred             CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCC
Q psy11143        272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL  351 (940)
Q Consensus       272 ~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~  351 (940)
                      .. ++.+..+..+|.|.++...|.|.|.|.+.|..|..+..+.++|+  .+|.+...|.+..+..|..++|.|.+.|.|.
T Consensus       268 ~~-ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~--apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~  344 (1281)
T KOG4222|consen  268 RS-RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ--APPSFGKKPRDQKVALGGTVTFPCETLGNPP  344 (1281)
T ss_pred             cc-ceeeeeccccccccccCCCcccceeeeccccccccccccceEEe--cCcccccccCccccccCceEEeeeecCCCCC
Confidence            54 56676776669999999999999999999999999999999997  5899999999999999999999999999999


Q ss_pred             CeEEEEeCCeee--------ccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCCC-CCCCCCC
Q psy11143        352 PRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV-EPAPHTS  422 (940)
Q Consensus       352 p~i~W~k~g~~i--------~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~-~~~p~~~  422 (940)
                      |.+.|.|.|...        ..+.+.++...++|.|.+++..|.|.|.|...|..|+....+++.+...-.. .|.|...
T Consensus       345 PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~  424 (1281)
T KOG4222|consen  345 PAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIE  424 (1281)
T ss_pred             cceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceee
Confidence            999999988632        2356778888899999999999999999999999999888888777654332 2222211


Q ss_pred             CCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCccccc-------cccc-eeeeeccCCccceeeeccchh
Q psy11143        423 REPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQD-------HGSL-MKLLRFPDESARTVVRAADVY  494 (940)
Q Consensus       423 ~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~~~~-------~~~l-l~l~r~p~~~~~~~~~Aa~~f  494 (940)
                      .-+......++    ..+...|.+..++..  .+.||.++-.....+       .+.+ .+-++.+ |.|+|.|.|+..-
T Consensus       425 ~g~~nQtl~v~----s~a~l~c~atg~P~p--~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~-DtG~YTc~as~~~  497 (1281)
T KOG4222|consen  425 QGPANQTLPVG----STASLPCSATGAPTP--NISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGP-DTGRYTCIASDES  497 (1281)
T ss_pred             ecccccccccC----cccccChhhhCCCCC--CchhhhcccccccCCcccceeeeceeeeeeeecC-CCcceeeeccCcc
Confidence            11212111221    234456666666654  556787663222111       1111 1222333 6799999999888


Q ss_pred             hhhheeeEEEE
Q psy11143        495 ERTLSHIKKHI  505 (940)
Q Consensus       495 g~t~~~i~~~v  505 (940)
                      |.+.-.....+
T Consensus       498 ges~wSatl~v  508 (1281)
T KOG4222|consen  498 GESTWSATLTV  508 (1281)
T ss_pred             cccccceeeEh
Confidence            87765444433

>KOG4221|consensus

Probab=100.00  E-value=3.4e-35  Score=346.87  Aligned_cols=364  Identities=25%  Similarity=0.501  Sum_probs=303.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeec--cCCCeEEEEECCEeecCCCCeEEE--eeceEEEEccccc-----CCCeEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRE-----SDAGVY  114 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~-----~DsG~Y  114 (940)
                      .+..|.++|.+.  .+|.++.|.|.+..  .+.++|.|.|||..+....+.+..  .+|++ .|.++..     -|+|.|
T Consensus        40 ~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl-~i~~v~~~kh~~~~eg~Y  116 (1381)
T KOG4221|consen   40 TPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSL-YISSVLASKHNKVDEGVY  116 (1381)
T ss_pred             CcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCce-eEeeecccccccccCceE
Confidence            456788888854  89999999999743  347799999999887654332222  56655 8888876     789999


Q ss_pred             EEEEEeC-CCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeece
Q psy11143        115 NCVAQNS-EGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS  192 (940)
Q Consensus       115 tC~a~n~-~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~s  192 (940)
                      +|.|+-. .|..-+ .+.|.+.  ..+.|...+.+.++..|+++.|.|.+.+.|.+.+.|.++..+++.+.++.+..++.
T Consensus       117 qc~atv~~~gsi~Sr~a~v~~a--~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~  194 (1381)
T KOG4221|consen  117 QCLATVEDVGSILSRTAKVALA--GLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGA  194 (1381)
T ss_pred             EEEEEccccceeecceEEEEec--ccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCc
Confidence            9999876 333333 5555554  35678889999999999999999999999999999999999998888888899999


Q ss_pred             EEEeecccCCCceEEEEEEcCCcc-eeeeeeeeecCCC-----CeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC
Q psy11143        193 LRLYNIGPQDSGLYRCTASNLLGE-DVAEGYLTVTGAP-----PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD  266 (940)
Q Consensus       193 L~I~~v~~~DsG~YtC~a~N~~g~-~s~s~~L~V~~~~-----p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~  266 (940)
                      |.|.++++.|.|.|+|.+++.... .+..+.|+|...+     ..|...|....+.+|+++.|.|.+.|.|.|+|.|.+|
T Consensus       195 L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrn  274 (1381)
T KOG4221|consen  195 LEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRN  274 (1381)
T ss_pred             EEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeC
Confidence            999999999999999999987554 3556777776322     2356678888999999999999999999999999999


Q ss_pred             CeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEee
Q psy11143        267 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP  346 (940)
Q Consensus       267 g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v  346 (940)
                      |..|..+........+.+|.|.+++..|+|.|+|.|+|......+++.|.|.  .+|.|...|.+..+.++.++.|.|.+
T Consensus       275 g~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~--a~P~~~~~p~~l~A~e~~die~ec~~  352 (1381)
T KOG4221|consen  275 GEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL--APPGFTKAPTTLVAHESMDIEFECPV  352 (1381)
T ss_pred             CeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE--cCCCCCCCCcceeeeeccceeEeCCC
Confidence            9999876633333335569999999999999999999987777777888876  57999999999999999999999999


Q ss_pred             cCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        347 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       347 ~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .|.|.|.+.|+|+|..+..+..+.+...+.|.|..+-..|+|.|.|.++|..|...+.+.|.|...+.
T Consensus       353 ~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~  420 (1381)
T KOG4221|consen  353 SGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA  420 (1381)
T ss_pred             CCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc
Confidence            99999999999999988778888887777799999999999999999999999999999987665543

>KOG4221|consensus

Probab=100.00  E-value=8.7e-35  Score=343.44  Aligned_cols=406  Identities=26%  Similarity=0.407  Sum_probs=317.6

Q ss_pred             cccEEEECCCCC-----CCCeEEEEEEEcC-Cce-EEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEE
Q psy11143          6 SSTELVISGVQR-----EHGGRYSCVAGNP-AGV-YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT   78 (940)
Q Consensus         6 s~~tL~I~~v~~-----sDsG~Y~C~a~n~-~g~-~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~   78 (940)
                      ++++|.|.++..     -|+|.|+|.|.-. .|. .+....|.+...+.|..++.+.++..|+++.|.|.+.+.|.+.+.
T Consensus        94 sNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~  173 (1381)
T KOG4221|consen   94 SNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIM  173 (1381)
T ss_pred             cCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeE
Confidence            577899999887     7999999999854 443 455667777788899999999999999999999999999999999


Q ss_pred             EEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEEecccC----CeeEecCCceeecCC
Q psy11143         79 WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRA----PRLVVKPFDMRAPAG  153 (940)
Q Consensus        79 W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~~----P~~~~~p~~~~v~~G  153 (940)
                      |.|+..+++...+.....+|.+ .|.++++.|.|.|+|.|++......+ .+.|+|...+.    -.|...|.+..+.+|
T Consensus       174 w~kn~~pl~~~~r~i~lpsG~L-~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g  252 (1381)
T KOG4221|consen  174 WLKNDQPLPLDSRVIVLPSGAL-EISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEG  252 (1381)
T ss_pred             EecccccccCCCcEEEcCCCcE-EecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccC
Confidence            9999998887775555566655 99999999999999999987655444 77888874322    245677888999999


Q ss_pred             CcEEEEEEeCCCCCCeEEEeeCCeeccccC-ceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCee
Q psy11143        154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF  232 (940)
Q Consensus       154 e~vtL~C~v~g~P~p~ItW~k~g~~i~~~~-~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~  232 (940)
                      +.+.|+|.+.+.|.|+|.|.+++..+.-+. ++.+...+.|.|.+++..|+|.|+|.|.|......+.+.|.|. .+|.+
T Consensus       253 ~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~-a~P~~  331 (1381)
T KOG4221|consen  253 DDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL-APPGF  331 (1381)
T ss_pred             CcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE-cCCCC
Confidence            999999999999999999999999886554 3444556789999999999999999999977777888889998 77999


Q ss_pred             eeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeE
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV  312 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s  312 (940)
                      ...|......++.++.|.|.+.|.|.|.+.|+|||..+..+..+++..++. |+|..+-..|.|.|.|.++|..|.....
T Consensus       332 ~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~  410 (1381)
T KOG4221|consen  332 TKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAA  410 (1381)
T ss_pred             CCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccch
Confidence            999999999999999999999999999999999999988888888888888 9999999999999999999999999988


Q ss_pred             EEEEEeeccC----CeEEEcCCceeecCCCeEEEEEe-----ecCcCCCeEEEEeCCeeeccCCcEEEeeec-eEEEecC
Q psy11143        313 AMIRINGHRA----PRLVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNI  382 (940)
Q Consensus       313 ~~l~V~~~~~----P~i~~~p~~~~v~~G~~vtL~C~-----v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~-sL~I~~v  382 (940)
                      +.+.+.....    +.+-..|.++.+..-++-.+.|.     ..+.+.+.++|++.............+..| .+.+.++
T Consensus       411 a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl  490 (1381)
T KOG4221|consen  411 AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNL  490 (1381)
T ss_pred             hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeec
Confidence            8886643210    11112222333333333333333     334566788998644332222222233334 2344444


Q ss_pred             CCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        383 GPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       383 ~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .......+.|.|.|..|....+..|+|..+++
T Consensus       491 ~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE  522 (1381)
T KOG4221|consen  491 SPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE  522 (1381)
T ss_pred             ccceeEEEEEeccCcccCCccCCceEEecCCC
Confidence            44433344568899999999999999998774

>PLN02283 alpha-dioxygenase

Probab=99.97  E-value=1.5e-31  Score=314.94  Aligned_cols=212  Identities=19%  Similarity=0.244  Sum_probs=165.0

Q ss_pred             cceeeeccchhhhhheeeEEEEeeccc-------ccccccccccccccCc-ccccccCCCCchhhccccCcCccCCCCcc
Q psy11143        484 ARTVVRAADVYERTLSHIKKHIQAGVK-------MNLSEDLSLGKAFFSP-WRLVDEGGVDPLLRGFITSPAKRKRPTEN  555 (940)
Q Consensus       484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (940)
                      +.|| .|++|| |+++.-...+.....       ....+.+.+.+.++.. ...+.+.|++++++||..|+++...  .+
T Consensus       373 s~EF-~aaYR~-Hslip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~l~~~Gl~~ll~~l~~q~aga~~--l~  448 (633)
T PLN02283        373 TEEF-TSVYRM-HSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGLKGEKKLSKIGFEKLMVSMGHQACGALE--LW  448 (633)
T ss_pred             hHHH-HHHHhh-hhcCCCceecccccccccccccccccccccHHHHHhhcccccccccCHHHHHHHHhhcchhccc--cc
Confidence            5667 478998 998643322221110       0112234455444321 1233467899999999999998763  22


Q ss_pred             ccHH-HHH----hhhccccchhhhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhC-CC
Q psy11143        556 LNKE-LTD----KLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYG-HP  629 (940)
Q Consensus       556 ~~~~-~~~----~~~~~~~~~~~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  629 (940)
                      ..+. +++    .+++..+..++||+|+|||||||||||+||+||++|||+++++||||+.   |+++++.|+++|+ ++
T Consensus       449 n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~---d~e~~~~L~~lY~~~v  525 (633)
T PLN02283        449 NYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD---DEEAIEVLREVYGDDV  525 (633)
T ss_pred             cCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCC---CHHHHHHHHHHhCCCH
Confidence            3333 333    2345455578999999999999999999999999999999999999984   7899999999998 67


Q ss_pred             CCccccCCChhHHHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcC
Q psy11143        630 GFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAP  709 (940)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (940)
                      +                                                                               
T Consensus       526 d-------------------------------------------------------------------------------  526 (633)
T PLN02283        526 E-------------------------------------------------------------------------------  526 (633)
T ss_pred             H-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             CCCCCCCCCCCcccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccc
Q psy11143        710 ILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIR  789 (940)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (940)
                                                                                                      
T Consensus       527 --------------------------------------------------------------------------------  526 (633)
T PLN02283        527 --------------------------------------------------------------------------------  526 (633)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCccccceeccccCCCCCCcchhhhhhhhhhhcccCCcccccC--CCCCChhHHhHhhhc-eeeeeeecCCCce
Q psy11143        790 DGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN--PSTFKPAQLTQIKQA-SLARVICDSGDRL  863 (940)
Q Consensus       790 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  863 (940)
                        +||||||+++|++++|+.+||||.||++.||.|+++||||||++  ++.||+.||++|+++ +|++|||+|-..+
T Consensus       527 --dVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~np~~fT~~gl~~I~~t~tl~dvl~r~~p~~  601 (633)
T PLN02283        527 --KLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNFNEKTYTKKGLEWVNTTESLKDVIDRHYPEM  601 (633)
T ss_pred             --HHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecCCcCcCCHHHHHHHHccCcHHHHHHHhCcch
Confidence              45599999999999999999999999999999999999999995  889999999999996 9999999997654

>KOG4194|consensus

Probab=99.95  E-value=2.1e-27  Score=263.90  Aligned_cols=274  Identities=27%  Similarity=0.492  Sum_probs=228.4

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeec--cCCCeEEEEECCEeecCC---CCeEEE---ee---------ceEEEEcc
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSLDSD---DHVTYE---HD---------GFVLVLNG  105 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kdg~~I~~~---~~~~~~---~~---------gs~L~I~~  105 (940)
                      ..+|.+..+|..+....|+.++|+|.+.+  ..+.++.|.++++..+.-   ...++.   .+         ...|.+.+
T Consensus       501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n  580 (873)
T KOG4194|consen  501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN  580 (873)
T ss_pred             CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence            35688899999999999999999999976  445599999988743211   111111   01         13489999


Q ss_pred             cccCCCeEEEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCee-ccc--
Q psy11143        106 VRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVE--  181 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~-i~~--  181 (940)
                      |+..|+|.|+|+++|..|+..+ .++++|..  .|.|...|.+.+...|+...|.|.++|.|.|+|.|.|+|.. .+.  
T Consensus       581 Vt~td~grYQCVvtN~FGStysqk~KltV~~--~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~  658 (873)
T KOG4194|consen  581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQ--APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAAR  658 (873)
T ss_pred             eecccCceEEEEEecccCcchhheeEEEeec--cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhh
Confidence            9999999999999999998776 77888765  68899999999999999999999999999999999997765 443  


Q ss_pred             cCceEE-eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCC-C
Q psy11143        182 DRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL-P  259 (940)
Q Consensus       182 ~~~~~~-~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~-p  259 (940)
                      ..+..+ ..+..+.|.+|..+|.|.|+|.|.|.+|..++++.|+|. ..|.+..+.....|..|+++.|.|.+.|.|. |
T Consensus       659 eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~-e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~p  737 (873)
T KOG4194|consen  659 ERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL-ETPSFSIPLEDQLVVVGETLVLQCLAEGAPADP  737 (873)
T ss_pred             hheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe-cCCcccccccceEEEecceEEEEEecCCCCCCc
Confidence            233333 344579999999999999999999999999999999999 6667777788899999999999999999887 9


Q ss_pred             eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       260 ~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      .+.|+|+.+++....+.++..+...|++.+...+|+|.|+|...|..|.......+.+..
T Consensus       738 r~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~  797 (873)
T KOG4194|consen  738 RLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ  797 (873)
T ss_pred             cccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence            999999999998877777777777799999999999999999999999887766666543

>KOG4194|consensus

Probab=99.95  E-value=1e-26  Score=258.37  Aligned_cols=276  Identities=26%  Similarity=0.491  Sum_probs=228.2

Q ss_pred             cccCCeeEecCCceeecCCCcEEEEEEeCC--CCCCeEEEeeCCeeccccC-----ce-EEe----------eeceEEEe
Q psy11143        135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDG--EPLPRISWSKDEAEFVEDR-----NH-KIH----------RTGSLRLY  196 (940)
Q Consensus       135 ~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g--~P~p~ItW~k~g~~i~~~~-----~~-~~~----------~~~sL~I~  196 (940)
                      ..+.|.+...|..+....|+.++|+|.+.+  ..+.++.|.++....+...     .+ ...          ..+.|.+.
T Consensus       500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~  579 (873)
T KOG4194|consen  500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD  579 (873)
T ss_pred             CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence            446688899999999999999999999986  4556999999765332210     00 000          12359999


Q ss_pred             ecccCCCceEEEEEEcCCcce-eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCee-cC--C
Q psy11143        197 NIGPQDSGLYRCTASNLLGED-VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS-LD--S  272 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~-l~--~  272 (940)
                      +|+..|+|.|.|+++|..|.. +..++++|. ..|.+...|.+.++..|+.+.|.|.++|.|.|+|.|.|+|.. .+  .
T Consensus       580 nVt~td~grYQCVvtN~FGStysqk~KltV~-~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~  658 (873)
T KOG4194|consen  580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAAR  658 (873)
T ss_pred             eeecccCceEEEEEecccCcchhheeEEEee-ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhh
Confidence            999999999999999999985 557788888 778899999999999999999999999999999999998765 44  3


Q ss_pred             CCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCC-
Q psy11143        273 DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-  351 (940)
Q Consensus       273 ~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~-  351 (940)
                      ..+..+..+...+.|.+++.+|+|.|+|.|.|..|..++.+.+.|.  ..|.+..+..+..+..|+++.|.|.+.+.|. 
T Consensus       659 eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~--e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~  736 (873)
T KOG4194|consen  659 ERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL--ETPSFSIPLEDQLVVVGETLVLQCLAEGAPAD  736 (873)
T ss_pred             hheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe--cCCcccccccceEEEecceEEEEEecCCCCCC
Confidence            4456666666669999999999999999999999999999999997  4677777777889999999999999999998 


Q ss_pred             CeEEEEeCCeeeccCCcEEEee-eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        352 PRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       352 p~i~W~k~g~~i~~~~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      |.+.|+|+++++.-.++..... +.-|++.+...+|+|.|+|+.+|..|.......+.|...+
T Consensus       737 pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~  799 (873)
T KOG4194|consen  737 PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK  799 (873)
T ss_pred             ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence            9999999998886555555443 3457888999999999999999999988887777766554

>KOG2408|consensus

Probab=99.94  E-value=3.3e-28  Score=290.47  Aligned_cols=161  Identities=43%  Similarity=0.750  Sum_probs=141.2

Q ss_pred             ccccCCChhHHHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCC
Q psy11143        632 SYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPIL  711 (940)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (940)
                      +..++++..++...++.++|..++...+|.++|||.||||+||+|||+.+|+||+|+++|+|||||.|||||++|.+|..
T Consensus       114 ~~~d~~~~~~~~~~~~~s~~~~~~~~~~c~~~~~~~~yRt~dG~CNN~~~P~~Gas~~~~~Rllpp~Yedg~~~p~~~~~  193 (719)
T KOG2408|consen  114 NVTDLLPERHLHVNPRASGCVCSQPPPVCLNDCFHSKYRTIDGTCNNLRNPTLGASNSPFRRLLPPKYEDGFSTPRGWSD  193 (719)
T ss_pred             ccccccccccccccccccCcccCCCCCCccCcccccCccccccccCCCCCCCcccccChhhccCCccccccccCcccccc
Confidence            56788888888888999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCcccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccC
Q psy11143        712 SSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG  791 (940)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (940)
                      +.                                                                              
T Consensus       194 ~~------------------------------------------------------------------------------  195 (719)
T KOG2408|consen  194 GT------------------------------------------------------------------------------  195 (719)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            61                                                                              


Q ss_pred             CCCccccceeccccCCCCCCcchhhhhhhhhhhcccCCcccccCCCCCChhHHhHhhhceeeeeeecCCCceeeEEEeec
Q psy11143        792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFS  871 (940)
Q Consensus       792 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  871 (940)
                         .         +|..|+                                     +++.|-.                 
T Consensus       196 ---~---------lP~~R~-------------------------------------vS~~l~~-----------------  209 (719)
T KOG2408|consen  196 ---P---------LPSARL-------------------------------------VSNKLLS-----------------  209 (719)
T ss_pred             ---C---------CCchHH-------------------------------------hhHhhhc-----------------
Confidence               1         666666                                     4444432                 


Q ss_pred             CCCCccccCCCceecccccccceecCCCCCCcccccccc-ccCCCcccccCCCCCccceecCCCCCCCC
Q psy11143        872 PRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLES-WEGIDCKKSCAFSPPCFPMEVPHDDPGPT  939 (940)
Q Consensus       872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  939 (940)
                       ...  .++++.++||+||||||+|||+.+++..+.... +.+..|.+.|...++||||.+|++||...
T Consensus       210 -~~~--~~~~~~~~~~~mqwgQFi~HDl~~~~~~~~~~~~~~~~~C~~~~~~~p~C~pi~~p~~dp~~~  275 (719)
T KOG2408|consen  210 -RSF--SPPDSKFNHMAMQWGQFIDHDLYFTPLSTVQNGELNIRCCNKPQLPSPPCFPIKIPPNDPYFP  275 (719)
T ss_pred             -ccc--CCCCcchhHHHHHHHHHhcccccccCCcccccCCccccccCCCcCCCCcccceecCCCCCccC
Confidence             011  559999999999999999999999888888876 68888999999999999999999999864

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.94  E-value=2.2e-25  Score=249.05  Aligned_cols=251  Identities=20%  Similarity=0.342  Sum_probs=184.2

Q ss_pred             ceeecCCCcEEEEEEe-----CCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143        147 DMRAPAGSSVEIPCKP-----DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  221 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~v-----~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~  221 (940)
                      ...+.+|+.+.|.|.+     .|.|.++++|+|++....  .......+..|.|.++..+|+|.|+|.+.|..+....++
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~  112 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSL  112 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence            3446689999999997     688999999999875321  112222233588999999999999999999998888888


Q ss_pred             eeeecCCC-CeeeeCCCeeEEecCCeEEEEEE-----EeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCC
Q psy11143        222 YLTVTGAP-PIFIQRPVSTTYSTGSTSRITCL-----VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA  295 (940)
Q Consensus       222 ~L~V~~~~-p~~~~~p~~~~v~~G~~v~L~C~-----v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~Ds  295 (940)
                      .|.|.... +.+...+....+.+|..+.|.|.     ..+.|.+.|+|+++.. + ...++....++ .|.|.+++.+|+
T Consensus       113 ~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~-~L~i~~v~~~d~  189 (326)
T PHA02785        113 NLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPG-IITIEDVRKNDA  189 (326)
T ss_pred             EEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCC-eEEEeecChhhC
Confidence            88886433 22323334456778999999996     2467889999998643 3 23344443333 599999999999


Q ss_pred             eEEEEEEEeCCCCceeE----EEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC---eEEEEeCCeeeccC--
Q psy11143        296 GVYNCVAQNSEGSAESV----AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP---RISWSKDEAEFVED--  366 (940)
Q Consensus       296 G~YtC~A~N~~Gs~~~s----~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p---~i~W~k~g~~i~~~--  366 (940)
                      |.|+|.|.|..|.....    +.+.|.....|.....|....+..|+.++|.|.+.|.|.+   .|.|+|||..+...  
T Consensus       190 G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~  269 (326)
T PHA02785        190 GYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDE  269 (326)
T ss_pred             eEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCC
Confidence            99999999998876433    2344433233333455677788899999999999998874   89999999877432  


Q ss_pred             ---CcEEEe-----------eeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        367 ---RNHKIH-----------RTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       367 ---~~~~i~-----------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                         .++...           ..+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        270 DGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             CCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence               122211           145799999999999999999999886443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.94  E-value=3.3e-25  Score=247.59  Aligned_cols=248  Identities=21%  Similarity=0.362  Sum_probs=185.3

Q ss_pred             EEecCCeEEEEEEe-----eccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143         56 TYSTGSTSRITCLV-----EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM  130 (940)
Q Consensus        56 ~V~eGesv~L~C~v-----~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~  130 (940)
                      .+.+|+.+.|.|.+     .|+|.++|+|+|+|....   +......+..|.|.++..+|+|.|+|.+.|..|....++.
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~  113 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN  113 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence            45689999999997     688989999999985321   1112234556789999999999999999999988888888


Q ss_pred             EEEecccCCeeEecCCceeecCCCcEEEEEE-----eCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCce
Q psy11143        131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL  205 (940)
Q Consensus       131 L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~-----v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~  205 (940)
                      |+|....++.+...+.+..+.+|+.+.|.|.     ..+.|.+.++|+++.. + ...+.....++.|.|.+++.+|+|.
T Consensus       114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~~L~i~~v~~~d~G~  191 (326)
T PHA02785        114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPGIITIEDVRKNDAGY  191 (326)
T ss_pred             EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCCeEEEeecChhhCeE
Confidence            8887654444444445566789999999997     2467889999987542 2 3344444456789999999999999


Q ss_pred             EEEEEEcCCcceee----eeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC---eEEEEECCeecCCCC--
Q psy11143        206 YRCTASNLLGEDVA----EGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDSDD--  274 (940)
Q Consensus       206 YtC~a~N~~g~~s~----s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p---~ItW~k~g~~l~~~~--  274 (940)
                      |+|.+.|..+....    .+.|.|..  .+|. ...|....+..|+.++|.|.+.|.|.+   .+.|++||..+....  
T Consensus       192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~  270 (326)
T PHA02785        192 YTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDED  270 (326)
T ss_pred             EEEEEEeccCCEEEeEEEEEEEEEeccCCCce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCC
Confidence            99999998776533    33455542  2333 345667778889999999999998864   899999999885421  


Q ss_pred             ---ceEEee----------cCeEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        275 ---HVTYEH----------DGFVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       275 ---~~~~~~----------~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                         ++....          ....|+|.+++.+|.|.|+|.|.|..|..
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        271 GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence               222111          12359999999999999999999988443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.74  E-value=6.5e-17  Score=170.69  Aligned_cols=158  Identities=20%  Similarity=0.361  Sum_probs=122.7

Q ss_pred             CceeecCCCcEEEEEEeCCCC-----------CCeEEEeeCCeec--cc-cCc--------eE-EeeeceEEEeecccCC
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEP-----------LPRISWSKDEAEF--VE-DRN--------HK-IHRTGSLRLYNIGPQD  202 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P-----------~p~ItW~k~g~~i--~~-~~~--------~~-~~~~~sL~I~~v~~~D  202 (940)
                      ....+.+|+++.|.|.+.+.|           .+++.|+|.+...  .. ..+        .. ...+++|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            456788999999999987644           3489999987542  10 011        01 1224689999999999


Q ss_pred             CceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEe-----eeCCCeEEEEECCeecCCCCceE
Q psy11143        203 SGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-----GHPLPQMTWFHDGNSLDSDDHVT  277 (940)
Q Consensus       203 sG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~-----G~P~p~ItW~k~g~~l~~~~~~~  277 (940)
                      +|.|+|.|.|..+.....+.|.|...       +....+.+|+.++|.|.+.     +.|.|+|+|+|+|.++..+.++.
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~  182 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSG-------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ  182 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecC-------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence            99999999998888887887877521       2334677899999999985     34678999999999998777777


Q ss_pred             EeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        278 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       278 ~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      +..++.+|.|.+++.+|+|.|+|.|+...+...
T Consensus       183 ~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~  215 (227)
T PHA02826        183 LRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNN  215 (227)
T ss_pred             EeCCCCEEEECcCCHHhCEEEEEEEEEeECCEE
Confidence            766666799999999999999999998754443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.72  E-value=1.8e-16  Score=167.25  Aligned_cols=155  Identities=15%  Similarity=0.230  Sum_probs=118.6

Q ss_pred             CeeEEecCCeEEEEEEEeeeCC-----------CeEEEEECCeec--C-CCCc--------eEEeecCeEEEEeeeccCC
Q psy11143        237 VSTTYSTGSTSRITCLVEGHPL-----------PQMTWFHDGNSL--D-SDDH--------VTYEHDGFVLVLNGVRESD  294 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G~P~-----------p~ItW~k~g~~l--~-~~~~--------~~~~~~g~sL~I~~v~~~D  294 (940)
                      ....+.+|+++.|.|.+.++|.           +.+.|+|++...  . .+.+        ..+...+..|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            4567889999999999877553           489999987542  1 1111        0111224469999999999


Q ss_pred             CeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeec-----CcCCCeEEEEeCCeeeccCCcE
Q psy11143        295 AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-----GEPLPRISWSKDEAEFVEDRNH  369 (940)
Q Consensus       295 sG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~-----g~P~p~i~W~k~g~~i~~~~~~  369 (940)
                      +|.|+|.|.|..+..+.++.|.|..  +      +.+..+.+|+++.|.|.+.     +.|.|+|+|+|++..+..+.++
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~--~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~  181 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDS--G------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRI  181 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEec--C------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCE
Confidence            9999999999888877777776632  1      1234667899999999986     3467899999999998877676


Q ss_pred             EEee-eceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        370 KIHR-TGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       370 ~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      .+.. .++|.|.+++.+|+|.|+|.|...++
T Consensus       182 ~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        182 QLRNNNSTLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             EEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence            6654 35899999999999999999998653

>KOG3515|consensus

Probab=99.68  E-value=8.4e-16  Score=181.06  Aligned_cols=406  Identities=19%  Similarity=0.262  Sum_probs=258.2

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCce-EEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEee--ccCCCeEEEEEC
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGV-YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVE--GHPLPQMTWFHD   82 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~-~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~--g~P~p~V~W~kd   82 (940)
                      ...+|...+...+.-+.|.|++.|..+. ......+.|..+|.-...........+..+.+.|.+.  +.|.+.+.|+.+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n  136 (741)
T KOG3515|consen   57 ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFN  136 (741)
T ss_pred             cCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeec
Confidence            3557788888888899999999998664 3455777888888766665666677889999999664  577889999998


Q ss_pred             CEeecCCCC--eEEE--------eeceEEEEcccccCCCeEEEEEEEeCCCc---eEEEEEEEEecccCCeeEe-cCCce
Q psy11143         83 GNSLDSDDH--VTYE--------HDGFVLVLNGVRESDAGVYNCVAQNSEGS---AESVAMIRINGHRAPRLVV-KPFDM  148 (940)
Q Consensus        83 g~~I~~~~~--~~~~--------~~gs~L~I~~v~~~DsG~YtC~a~n~~g~---~~~~~~L~V~~~~~P~~~~-~p~~~  148 (940)
                      +........  ..+.        ...+.+.+...+.+|.|.|+|.|.+....   ......+.+.......... .....
T Consensus       137 ~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~q  216 (741)
T KOG3515|consen  137 NRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQ  216 (741)
T ss_pred             cEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcC
Confidence            765432221  1111        22445788989999999999999985333   2234444443322222222 22235


Q ss_pred             eecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEEe-----eeceEEEeecccCCCceEEEEEEcCCcceeeeee
Q psy11143        149 RAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  222 (940)
Q Consensus       149 ~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~  222 (940)
                      ...+|+.+.|.|.+. |+|.+.++|+++.............     ....+.+..-...+.-...|.+.|   ....+..
T Consensus       217 sF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~  293 (741)
T KOG3515|consen  217 SFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQI  293 (741)
T ss_pred             cccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---cccccee
Confidence            788999999999776 5899999999977665443111100     111233322233334467899998   1122222


Q ss_pred             eeecCCCCeeeeCCCeeEEecCCeEEEEEEEe-eeCCCeEEEEECCeecCCCCceE--EeecC----eEEEEeeeccCCC
Q psy11143        223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVT--YEHDG----FVLVLNGVRESDA  295 (940)
Q Consensus       223 L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~-G~P~p~ItW~k~g~~l~~~~~~~--~~~~g----~sL~I~~v~~~Ds  295 (940)
                      +.+...+-...+.+....+..|.+..+.|... ++|.+.+.|+|+...........  ....+    ..+........|.
T Consensus       294 tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~  373 (741)
T KOG3515|consen  294 TAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDG  373 (741)
T ss_pred             eecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcC
Confidence            33332232333444555588899999999764 57888999999655432221110  00111    1255566778999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEEeeccCCeEEEc-CCceeecCCCeEEEEEeecCcCC-CeEEEEeCCeeeccCC--cEEE
Q psy11143        296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDR--NHKI  371 (940)
Q Consensus       296 G~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~-p~~~~v~~G~~vtL~C~v~g~P~-p~i~W~k~g~~i~~~~--~~~i  371 (940)
                      |.|+|.+.|.......+....+.+.++|.+... ...+...+++.....-.+.++|. +.+.|.+.+.++....  .+.+
T Consensus       374 g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v  453 (741)
T KOG3515|consen  374 GQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRV  453 (741)
T ss_pred             ceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEe
Confidence            999999999886666666666666566665543 22333444444443333335554 5999999988775433  2333


Q ss_pred             ee-eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        372 HR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       372 ~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .. .+-..+.++...|.|.|.|.|.|..|.+.....+.+...+.
T Consensus       454 ~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~  497 (741)
T KOG3515|consen  454 GAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPH  497 (741)
T ss_pred             eccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCc
Confidence            22 33445777999999999999999999988887766665543

>KOG3515|consensus

Probab=99.64  E-value=3.3e-15  Score=176.12  Aligned_cols=356  Identities=19%  Similarity=0.284  Sum_probs=216.9

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      |.....+.+..+.+|+.|.|.|.+.++ |.+.|.||+.++.+.  .+..... ...|.........-+.|.|.+.|..+.
T Consensus         8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~c~a~ns~~~   84 (741)
T KOG3515|consen    8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATIA-DPTLVTTGDVRDTVAELNCRAFNSVGM   84 (741)
T ss_pred             ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccccc-CCceeeecchhhhhhhhhhhhcccccC
Confidence            344444445578999999999999875 456999999988765  1111112 233566677777788999999998555


Q ss_pred             eEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC--CCCCCeEEEeeCCeeccccCc-----------eEEeee
Q psy11143        125 AES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD--GEPLPRISWSKDEAEFVEDRN-----------HKIHRT  190 (940)
Q Consensus       125 ~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~--g~P~p~ItW~k~g~~i~~~~~-----------~~~~~~  190 (940)
                      ... ...+.+.  .+|.-...........+..+.+.|.+.  +.|.+.+.|..+.........           ......
T Consensus        85 ~~~~~~~l~v~--~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~  162 (741)
T KOG3515|consen   85 PSRCPMILDVD--YPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEP  162 (741)
T ss_pred             ceecceeeccc--cCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccc
Confidence            443 3333333  344333333344566788999999655  577889999987654322110           011223


Q ss_pred             ceEEEeecccCCCceEEEEEEcCC---cceeeeeeeeecCCCCeeee--CCCeeEEecCCeEEEEEEEe-eeCCCeEEEE
Q psy11143        191 GSLRLYNIGPQDSGLYRCTASNLL---GEDVAEGYLTVTGAPPIFIQ--RPVSTTYSTGSTSRITCLVE-GHPLPQMTWF  264 (940)
Q Consensus       191 ~sL~I~~v~~~DsG~YtC~a~N~~---g~~s~s~~L~V~~~~p~~~~--~p~~~~v~~G~~v~L~C~v~-G~P~p~ItW~  264 (940)
                      ..+.+...+.++.|.|+|.+.|..   +.......+.|......+..  ........+|+.+.|.|.+. |+|.++++|+
T Consensus       163 s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~  242 (741)
T KOG3515|consen  163 SLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWY  242 (741)
T ss_pred             cceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhc
Confidence            457888888999999999999843   23333333444322222222  23335788999999999765 4799999999


Q ss_pred             ECCeecCCCCceEEeecCe----EEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCe-EEEcCCceeecCCCe
Q psy11143        265 HDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR-LVVKPFDMRAPAGSS  339 (940)
Q Consensus       265 k~g~~l~~~~~~~~~~~g~----sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~-i~~~p~~~~v~~G~~  339 (940)
                      ++..............++.    .+.+..-.....-...|.+.|. +.  .+..+.+.  .+|. ..+.+....+..|++
T Consensus       243 ~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~-~~--~~~~tav~--~~~~~~~Ist~~~~ls~g~s  317 (741)
T KOG3515|consen  243 KDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL-LA--ASQITAVQ--VKPTAVPISTSDSGLSSGRS  317 (741)
T ss_pred             cccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCc-cc--cceeeecc--cccccccccCcccccccccc
Confidence            9987765542211111221    1333333344455677999982 21  12222222  1221 122333445778999


Q ss_pred             EEEEEee-cCcCCCeEEEEeCCeeeccCCcEE-------EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        340 VEIPCKP-DGEPLPRISWSKDEAEFVEDRNHK-------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       340 vtL~C~v-~g~P~p~i~W~k~g~~i~~~~~~~-------i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      ..+.|.. .++|.+.+.|+|+...........       ....-.+....+...|.|.|+|.|.|.......+....+..
T Consensus       318 ~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~  397 (741)
T KOG3515|consen  318 ARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPV  397 (741)
T ss_pred             cccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccc
Confidence            9999875 456878999999654332211000       01111356667788899999999999886665555555443

>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions

Probab=99.63  E-value=1.4e-17  Score=197.77  Aligned_cols=40  Identities=60%  Similarity=1.113  Sum_probs=32.2

Q ss_pred             ccccCCcccCCCCCcccccchhhhccccccccCCCcCCCc
Q psy11143        669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVA  708 (940)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (940)
                      |||+||+|||+.||.||++.|||+|+|||.|.||+++|..
T Consensus         1 yRt~dG~cNN~~~p~~G~~~~~~~Rllp~~Y~dg~~~pr~   40 (530)
T PF03098_consen    1 YRTYDGSCNNLANPSWGAAGTPFRRLLPPAYADGVSEPRG   40 (530)
T ss_dssp             S--SSSTTSSSSSTTTT-SSEE-BESS-B--TTSSSBTTT
T ss_pred             CCCCCCCccCCCcccccCCCCcccccCCcccccccccccc
Confidence            9999999999999999999999999999999999999887

Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.54  E-value=7.7e-14  Score=128.15  Aligned_cols=92  Identities=29%  Similarity=0.421  Sum_probs=83.5

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      |.|...+.++.+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+..   .+.|+|.++..+|+|.|+|.|.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            567888889999999999999999999999999999999998776666653   45799999999999999999999999


Q ss_pred             eEEEEEEEEEecCCC
Q psy11143        400 EDVAEGYLTVTGENS  414 (940)
Q Consensus       400 ~~~~s~~L~V~~~~~  414 (940)
                      ...+++.|.|.+.|.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (98)
T cd05762          81 SRQAQVNLTVVDKPD   95 (98)
T ss_pred             ceeEEEEEEEecCCC
Confidence            999999999998865

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.50  E-value=2.7e-13  Score=124.49  Aligned_cols=94  Identities=19%  Similarity=0.358  Sum_probs=83.4

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      |.|...|.+..+.+|+.+.|.|.+.|.|+++|.|+|+|..|....+.++.  ...+.|.|.++..+|+|.|+|.|.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            56788899999999999999999999999999999999999866666655  3456689999999999999999999999


Q ss_pred             ceEEEEEEEEecccCC
Q psy11143        124 SAESVAMIRINGHRAP  139 (940)
Q Consensus       124 ~~~~~~~L~V~~~~~P  139 (940)
                      ....++.|.|.+.+.|
T Consensus        81 ~~~~~~~l~V~~~P~p   96 (98)
T cd05762          81 SRQAQVNLTVVDKPDP   96 (98)
T ss_pred             ceeEEEEEEEecCCCC
Confidence            9999999999876543

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.49  E-value=1.7e-13  Score=123.31  Aligned_cols=88  Identities=30%  Similarity=0.518  Sum_probs=78.1

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      ||.|...+.+..+.+|++++|.|.+.|.|.|.++|+|++..+....++.. ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   79 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-SGAVLKIFNIQPEDEGTYECEAENIKGKD   79 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-CCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence            58888889999999999999999999999999999999987765544433 35589999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy11143        402 VAEGYLTVT  410 (940)
Q Consensus       402 ~~s~~L~V~  410 (940)
                      ..++.|.|+
T Consensus        80 ~~~~~l~V~   88 (88)
T cd05851          80 KHQARVYVQ   88 (88)
T ss_pred             EEEEEEEEC
Confidence            999999874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.44  E-value=9.3e-13  Score=118.48  Aligned_cols=87  Identities=22%  Similarity=0.417  Sum_probs=76.7

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ||.+...+.+..+.+|+.+.|.|.+.|+|.|.|+|+|++..+....  ++...+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   78 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA--EISMSGAVLKIFNIQPEDEGTYECEAENIKGK   78 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC--EEecCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence            5788899999999999999999999999999999999998876543  34445567899999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy11143        125 AESVAMIRI  133 (940)
Q Consensus       125 ~~~~~~L~V  133 (940)
                      ....+.|.|
T Consensus        79 ~~~~~~l~V   87 (88)
T cd05851          79 DKHQARVYV   87 (88)
T ss_pred             eEEEEEEEE
Confidence            988888776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.43  E-value=4.7e-13  Score=115.92  Aligned_cols=73  Identities=40%  Similarity=0.677  Sum_probs=68.4

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |+.+.|.|.+.|.|.|.|.|+|++..+..+.++.+..+++|.|.+++.+|+|.|+|.|.|..|+...++.|+|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6889999999999999999999999888778888878889999999999999999999999999999999875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.43  E-value=5.1e-13  Score=116.01  Aligned_cols=74  Identities=34%  Similarity=0.706  Sum_probs=67.9

Q ss_pred             CCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       336 ~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      +|+++.|.|.+.|.|.|.|+|+|++..+....+..+..+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            58999999999999999999999999887766666667789999999999999999999999999999998875

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.39  E-value=2.9e-12  Score=115.18  Aligned_cols=88  Identities=31%  Similarity=0.541  Sum_probs=76.2

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      ||.+...|.+..+.+|++++|.|.+.|.|.|.++|+|++..+....... ...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   79 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQFEDEGTYECEAENIKGKD   79 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCcccCEEEEEEEEECCCcE
Confidence            4667777888889999999999999999999999999887665544333 456799999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy11143        402 VAEGYLTVT  410 (940)
Q Consensus       402 ~~s~~L~V~  410 (940)
                      ..++.|.|.
T Consensus        80 ~~~~~l~V~   88 (88)
T cd04968          80 THQGRIYVQ   88 (88)
T ss_pred             EEEEEEEEC
Confidence            999999873

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.39  E-value=2.7e-12  Score=116.43  Aligned_cols=87  Identities=24%  Similarity=0.499  Sum_probs=78.0

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .||.|...|.+..+.+|+.+.|.|.+.|+|.|.+.|+|+|..+..+.++.+..   .++|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            47888888999999999999999999999999999999999887766666654   358999999999999999999999


Q ss_pred             CeeEEEEEEE
Q psy11143        398 LGEDVAEGYL  407 (940)
Q Consensus       398 ~G~~~~s~~L  407 (940)
                      .|....++.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9998888776

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.37  E-value=2.7e-12  Score=110.53  Aligned_cols=71  Identities=27%  Similarity=0.551  Sum_probs=65.3

Q ss_pred             eEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       339 ~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      +++|.|.+.|.|.|.++|+|++..+....++.+..++.|.|.++..+|+|.|+|.|.|..|+..+++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999999999999999999887777777777889999999999999999999999999999998875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.36  E-value=3.8e-12  Score=113.68  Aligned_cols=84  Identities=31%  Similarity=0.540  Sum_probs=74.6

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s  404 (940)
                      |...|.+..+..|+.++|.|.+.|.|.|.+.|+|++..+....++.+ .++.|.|.++..+|+|.|+|.|.|..|...++
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYAS   80 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence            34567788999999999999999999999999999998876666554 56789999999999999999999999999999


Q ss_pred             EEEEE
Q psy11143        405 GYLTV  409 (940)
Q Consensus       405 ~~L~V  409 (940)
                      +.|.|
T Consensus        81 ~~l~V   85 (85)
T cd05728          81 AELAV   85 (85)
T ss_pred             EEEEC
Confidence            98875

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.35  E-value=4.6e-12  Score=116.84  Aligned_cols=80  Identities=19%  Similarity=0.319  Sum_probs=69.9

Q ss_pred             ceeecCCCeEEEEEeecC-cCCCeEEEEeCCeeeccCCcEEEee--------eceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        331 DMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~i~~--------~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      .+.+.+|+++.|.|.+.| .|.|.+.|+|+|.++.......+..        .++|.|..+..+|+|.|+|.|+|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            567889999999999999 8999999999999987654433322        3679999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy11143        402 VAEGYLTVT  410 (940)
Q Consensus       402 ~~s~~L~V~  410 (940)
                      +.++.|.|.
T Consensus        92 ~~t~~L~V~  100 (101)
T cd04975          92 SLTFELYVN  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999999886

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.35  E-value=3.6e-12  Score=110.86  Aligned_cols=70  Identities=24%  Similarity=0.471  Sum_probs=61.2

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeee--c--eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRT--G--SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~--~--sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |.|.|.+.|.|.|.|.|+|++..+.. ..++.+..+  +  +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            57999999999999999999998874 356665433  2  7999999999999999999999999999999875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.35  E-value=1.1e-11  Score=111.40  Aligned_cols=87  Identities=34%  Similarity=0.617  Sum_probs=79.5

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      |.|...+.++.+.+|++++|.|.+.|.|.|.+.|++++..+..+.++.+..   ..+|.|.++..+|+|.|+|.|.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            678888889999999999999999999999999999999998877777654   44899999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy11143        400 EDVAEGYLTV  409 (940)
Q Consensus       400 ~~~~s~~L~V  409 (940)
                      ..+.++.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.35  E-value=8.4e-12  Score=113.20  Aligned_cols=88  Identities=31%  Similarity=0.566  Sum_probs=76.2

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee--ceEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~--gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .||.+...|....+.+|+.+.|.|.+.|+|.|.+.|+|+|..+....+..+...  ...|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            478888999999999999999999999999999999999998876656555432  356899999999999999999999


Q ss_pred             CCceEEEEEE
Q psy11143        122 EGSAESVAMI  131 (940)
Q Consensus       122 ~g~~~~~~~L  131 (940)
                      .|.......|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9987776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.34  E-value=9.2e-12  Score=114.83  Aligned_cols=82  Identities=24%  Similarity=0.345  Sum_probs=69.5

Q ss_pred             CcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEee-------ceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         53 VSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHD-------GFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~-------gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ..+.+.+|+++.|.|.+.| .|+|.|.|+|||.+|.......+...       ++.|.|.++..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4678999999999999999 89999999999999975444332222       367899999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy11143        125 AESVAMIRIN  134 (940)
Q Consensus       125 ~~~~~~L~V~  134 (940)
                      .+..+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.33  E-value=8.3e-12  Score=113.88  Aligned_cols=90  Identities=27%  Similarity=0.502  Sum_probs=74.2

Q ss_pred             CCeEEEcC--CceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeee-ceEEEecCCCCCCeEEEEEEEeC
Q psy11143        322 APRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRT-GSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       322 ~P~i~~~p--~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~-~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      ||.|...+  .+..+..|+++.|.|.+.|.|.|.|.|+|+|..+... .++..... +.|.|.+++.+|+|.|+|.|.|.
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence            45554433  3457889999999999999999999999999988654 44444433 46999999999999999999999


Q ss_pred             CeeEEEEEEEEEec
Q psy11143        398 LGEDVAEGYLTVTG  411 (940)
Q Consensus       398 ~G~~~~s~~L~V~~  411 (940)
                      .|....++.|.|..
T Consensus        81 ~G~~~~~~~L~V~~   94 (95)
T cd05730          81 AGEQEAEIHLKVFA   94 (95)
T ss_pred             CCeEEEEEEEEEEe
Confidence            99999999998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.33  E-value=5.3e-12  Score=109.25  Aligned_cols=73  Identities=38%  Similarity=0.684  Sum_probs=67.7

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |+++.|.|.+.|.|.|.++|+|++..+....++.+..+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            6889999999999999999999999988777887777789999999999999999999999999999988875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.33  E-value=1.3e-11  Score=110.94  Aligned_cols=88  Identities=33%  Similarity=0.690  Sum_probs=78.1

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe--eceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--DGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~--~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      |.|...+.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+....+..+..  ....|.|.++..+|+|.|+|.|.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            567888899999999999999999999999999999999998877777763  345689999999999999999999988


Q ss_pred             ceEEEEEEEE
Q psy11143        124 SAESVAMIRI  133 (940)
Q Consensus       124 ~~~~~~~L~V  133 (940)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            8888777765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.33  E-value=1.1e-11  Score=113.03  Aligned_cols=91  Identities=29%  Similarity=0.626  Sum_probs=74.4

Q ss_pred             CCeEEeCC--CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC-CCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         45 PPIFIQRP--VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        45 pP~~~~~p--~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~-~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      ||.+...+  ....+.+|+++.|.|.+.|.|.|.|.|+|+|..+... .+..+...++.|.|.+++.+|+|.|+|.|.|.
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence            34444433  3457899999999999999999999999999988755 33444456667899999999999999999999


Q ss_pred             CCceEEEEEEEEec
Q psy11143        122 EGSAESVAMIRING  135 (940)
Q Consensus       122 ~g~~~~~~~L~V~~  135 (940)
                      .|.....+.|.|..
T Consensus        81 ~G~~~~~~~L~V~~   94 (95)
T cd05730          81 AGEQEAEIHLKVFA   94 (95)
T ss_pred             CCeEEEEEEEEEEe
Confidence            99988888888753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.33  E-value=1.2e-11  Score=111.36  Aligned_cols=78  Identities=26%  Similarity=0.431  Sum_probs=67.6

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEee-------eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHR-------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~-------~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      |+.++|.|.+.|.|.|.++|+|++..+... .++.+..       .++|.|.++..+|+|.|+|.|.|.+|..+..+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            789999999999999999999999887543 3555432       25799999999999999999999999999999999


Q ss_pred             EecCCC
Q psy11143        409 VTGENS  414 (940)
Q Consensus       409 V~~~~~  414 (940)
                      |+.+|.
T Consensus        81 V~~~P~   86 (88)
T cd05735          81 VQEPPD   86 (88)
T ss_pred             EeCCCC
Confidence            998764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.32  E-value=7.6e-12  Score=108.59  Aligned_cols=74  Identities=31%  Similarity=0.546  Sum_probs=65.2

Q ss_pred             cCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       243 ~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      +|+.+.|.|.+.|.|.|.|+|+|++..+....+..+..++ +|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG-TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC-eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            5899999999999999999999999998876665554444 5999999999999999999999999988887764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.32  E-value=6.2e-12  Score=109.45  Aligned_cols=70  Identities=26%  Similarity=0.507  Sum_probs=61.2

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeeec----eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~~----sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |+|.|.+.|.|.|.|.|+|++..+..+ .++.+...+    +|.|.++..+|+|.|+|.|.|..|+.+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999988653 456664433    6999999999999999999999999999999875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.31  E-value=1.2e-11  Score=112.12  Aligned_cols=82  Identities=22%  Similarity=0.431  Sum_probs=70.6

Q ss_pred             cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVA  403 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~  403 (940)
                      .|..+.+.+|++++|.|.+.|.|.|.+.|+|++..+....++.+..    ..+|.|.++..+|+|.|+|.|.|..|....
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            3445678999999999999999999999999999887666655532    237999999999999999999999999998


Q ss_pred             EEEEEE
Q psy11143        404 EGYLTV  409 (940)
Q Consensus       404 s~~L~V  409 (940)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.31  E-value=1.9e-11  Score=109.79  Aligned_cols=87  Identities=28%  Similarity=0.548  Sum_probs=73.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      |+.+...|....+.+|+.+.|.|.+.|.|.|.++|+|++..+......+  ..+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   78 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSGAVLKIPNIQFEDEGTYECEAENIKGK   78 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence            4667778889999999999999999999999999999988765443322  34456899999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy11143        125 AESVAMIRI  133 (940)
Q Consensus       125 ~~~~~~L~V  133 (940)
                      ....+.|.|
T Consensus        79 ~~~~~~l~V   87 (88)
T cd04968          79 DTHQGRIYV   87 (88)
T ss_pred             EEEEEEEEE
Confidence            888888776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.31  E-value=1.9e-11  Score=110.90  Aligned_cols=83  Identities=28%  Similarity=0.499  Sum_probs=70.6

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee---ceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~---gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      -|..+++.+|+++.|.|.+.|.|.|+|.|+|++..+....+.++...   ...|.|.+++.+|+|.|+|.|.|..|....
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            35667899999999999999999999999999999977666665422   346899999999999999999999998888


Q ss_pred             EEEEEE
Q psy11143        128 VAMIRI  133 (940)
Q Consensus       128 ~~~L~V  133 (940)
                      ...|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            766653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.31  E-value=1.5e-11  Score=112.30  Aligned_cols=84  Identities=26%  Similarity=0.461  Sum_probs=69.2

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCC-CeEEEEe-CCeeecc-CCcEEEeee----ceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSK-DEAEFVE-DRNHKIHRT----GSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~-p~i~W~k-~g~~i~~-~~~~~i~~~----~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      .+.|.+..+..|++++|.|.+.|.|. |.|+|++ ++..+.. +.++.+..+    ++|.|.++..+|+|.|+|.|+|..
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   83 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED   83 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence            34566678899999999999999995 6999998 7766654 345544332    589999999999999999999997


Q ss_pred             -eeEEEEEEEEE
Q psy11143        399 -GEDVAEGYLTV  409 (940)
Q Consensus       399 -G~~~~s~~L~V  409 (940)
                       |..++++.|.|
T Consensus        84 ~g~~~~s~~l~v   95 (96)
T cd05865          84 EGESEATVNVKI   95 (96)
T ss_pred             CCcEEEEEEEEE
Confidence             89999998876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.31  E-value=1.4e-11  Score=112.88  Aligned_cols=88  Identities=27%  Similarity=0.539  Sum_probs=72.1

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-----CcEEEee---eceEEEecCCCCCCeEEEEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-----RNHKIHR---TGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-----~~~~i~~---~~sL~I~~v~~~D~G~YtC~  393 (940)
                      .|.|...+....+..|+.++|.|.+.|.|.|.|+|++++..+...     .++.+..   .++|.|.+++.+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            577777776666667899999999999999999999988766432     2333322   25899999999999999999


Q ss_pred             EEeCCeeEEEEEEEEE
Q psy11143        394 ASNLLGEDVAEGYLTV  409 (940)
Q Consensus       394 A~N~~G~~~~s~~L~V  409 (940)
                      |.|..|..+.++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999999998875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.30  E-value=1e-11  Score=107.52  Aligned_cols=73  Identities=26%  Similarity=0.552  Sum_probs=66.2

Q ss_pred             CCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       244 G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      |+.+.|.|.+.|.|.|.|+|+|++..+..+.++.+..++. |.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~-L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGS-LEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCE-EEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6889999999999999999999999888777877766665 999999999999999999999999999888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.30  E-value=1.8e-11  Score=109.55  Aligned_cols=79  Identities=27%  Similarity=0.524  Sum_probs=68.6

Q ss_pred             ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      .+.+..|+.+.|.|.+.|.|.|.+.|+|++..+... .++.+..   .++|.|.++..+|+|.|+|.|.|..|...+++.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            356789999999999999999999999999988653 3555543   357999999999999999999999999998888


Q ss_pred             EEE
Q psy11143        407 LTV  409 (940)
Q Consensus       407 L~V  409 (940)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            865

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.30  E-value=1.6e-11  Score=107.10  Aligned_cols=72  Identities=29%  Similarity=0.608  Sum_probs=63.5

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCC---cEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR---NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~---~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |++++|.|.+.|.|.|.|+|+|+|..+....   ++. ...++|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6889999999999999999999999876432   333 35678999999999999999999999999999999987

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.30  E-value=6.9e-12  Score=107.31  Aligned_cols=68  Identities=35%  Similarity=0.714  Sum_probs=63.0

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL  407 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L  407 (940)
                      |.|.|.+.|.|.|.|+|+|++..+....++.+..+++|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999999999999999999998887778888778899999999999999999999999999988876

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.30  E-value=2e-11  Score=112.11  Aligned_cols=87  Identities=26%  Similarity=0.590  Sum_probs=71.0

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ceeecc-----CCcEEEee---eceEEEecCCCCCCeEEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVE-----DRNHKIHR---TGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~i~~-----~~~~~i~~---~~sL~I~~v~~~D~G~Yt  391 (940)
                      +|.+.. +.+..+.+|++++|.|.+.|.|.|.|.|+|+  +..+..     +.++.+..   .++|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            566654 6678999999999999999999999999994  444321     23555532   358999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEE
Q psy11143        392 CTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       392 C~A~N~~G~~~~s~~L~V  409 (940)
                      |.|.|.+|....++.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999999999988865

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.30  E-value=2.1e-11  Score=111.68  Aligned_cols=88  Identities=34%  Similarity=0.637  Sum_probs=69.8

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-----CcEEEeeeceEEEe-----cCCCCCCeEEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-----RNHKIHRTGSLRLY-----NIGPQDSGLYR  391 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-----~~~~i~~~~sL~I~-----~v~~~D~G~Yt  391 (940)
                      ||.|...|.+..+.+|++++|.|.+.|.|.|.|.|+|+|..+...     .+.....++.+.+.     .+..+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            588888899999999999999999999999999999999887651     22223334443322     23689999999


Q ss_pred             EEEEeCCee-EEEEEEEEE
Q psy11143        392 CTASNLLGE-DVAEGYLTV  409 (940)
Q Consensus       392 C~A~N~~G~-~~~s~~L~V  409 (940)
                      |.|.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 666777776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.29  E-value=1.5e-11  Score=111.06  Aligned_cols=83  Identities=25%  Similarity=0.431  Sum_probs=69.8

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEE---eeeceEEEecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA  403 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i---~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~  403 (940)
                      ..|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........   ...++|.|.++..+|.|.|+|.|.|..|...+
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            345566789999999999999999999999999988765443222   22458999999999999999999999999999


Q ss_pred             EEEEEE
Q psy11143        404 EGYLTV  409 (940)
Q Consensus       404 s~~L~V  409 (940)
                      ++.|.|
T Consensus        85 ~~~L~v   90 (90)
T cd04972          85 SVQVTV   90 (90)
T ss_pred             EEEEeC
Confidence            988865

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.29  E-value=1.7e-11  Score=107.05  Aligned_cols=73  Identities=23%  Similarity=0.485  Sum_probs=62.8

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |+.++|.|.+.|.|.|+|+|+|+|.++....  .......+.|.|.+++.+|+|.|+|.|.|..|...++++|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            6889999999999999999999999885332  222234458999999999999999999999999999999987

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.29  E-value=1.8e-11  Score=110.57  Aligned_cols=78  Identities=29%  Similarity=0.601  Sum_probs=68.3

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      |++++|.|.+.|.|.|.+.|+|++..+        ....++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            689999999999999999999988643        234566766678999999999999999999999999999999999


Q ss_pred             EecCCC
Q psy11143        409 VTGENS  414 (940)
Q Consensus       409 V~~~~~  414 (940)
                      |.+...
T Consensus        81 V~~~~~   86 (90)
T cd05726          81 VTDVIA   86 (90)
T ss_pred             Eeeccc
Confidence            998643

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.28  E-value=4.9e-11  Score=116.95  Aligned_cols=116  Identities=19%  Similarity=0.336  Sum_probs=88.6

Q ss_pred             cEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeecc-CC-CeEEEEECCEe
Q psy11143          8 TELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNS   85 (940)
Q Consensus         8 ~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~-p~V~W~kdg~~   85 (940)
                      .+|+|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+......+|+.++|.|.+.|. |. +.|+|+++|..
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            37999999999999999999998888888899999999999888877666689999999999984 54 48999999864


Q ss_pred             ecC----CCC-----eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         86 LDS----DDH-----VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        86 I~~----~~~-----~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      ...    ...     .+...++     +.|.|......+.+.|+|.+.+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            211    011     1112233     2356665555667799999987644

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.28  E-value=2.5e-11  Score=112.05  Aligned_cols=80  Identities=24%  Similarity=0.262  Sum_probs=69.3

Q ss_pred             ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe---------eeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---------RTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~---------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      ...+..|+.+.|.|.+.|+|.|.+.|+|+|.++..+.+....         ..++|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            457888999999999999999999999999998765543221         13579999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy11143        402 VAEGYLTVT  410 (940)
Q Consensus       402 ~~s~~L~V~  410 (940)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999999885

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.28  E-value=2.1e-11  Score=108.88  Aligned_cols=84  Identities=27%  Similarity=0.554  Sum_probs=71.8

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      |...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+..  ..+..|.|.+++.+|+|.|+|.|.|..|....
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIE--VEAGDLRITKLSLSDSGMYQCVAENKHGTIYA   79 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEE--EeCCEEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence            4567888999999999999999999999999999999987554443  34456799999999999999999999999888


Q ss_pred             EEEEEE
Q psy11143        128 VAMIRI  133 (940)
Q Consensus       128 ~~~L~V  133 (940)
                      ++.|.|
T Consensus        80 ~~~l~V   85 (85)
T cd05728          80 SAELAV   85 (85)
T ss_pred             EEEEEC
Confidence            777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.28  E-value=3.5e-11  Score=108.64  Aligned_cols=85  Identities=27%  Similarity=0.481  Sum_probs=70.0

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  126 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~  126 (940)
                      ...|....+.+|+.+.|.|.+.|+|.|.|.|+++|..+.........  .....|.|.++..+|.|.|+|.|.|..|...
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~   83 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN   83 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence            44566777999999999999999999999999999988654332222  2345689999999999999999999999988


Q ss_pred             EEEEEEE
Q psy11143        127 SVAMIRI  133 (940)
Q Consensus       127 ~~~~L~V  133 (940)
                      ..+.|.|
T Consensus        84 ~~~~L~v   90 (90)
T cd04972          84 VSVQVTV   90 (90)
T ss_pred             EEEEEeC
Confidence            8777654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.27  E-value=4.6e-11  Score=106.98  Aligned_cols=80  Identities=23%  Similarity=0.483  Sum_probs=67.6

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC-CCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM  130 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~-~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~  130 (940)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|+|++.++... .++.+.  ...+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            567899999999999999999999999999998653 344444  23467899999999999999999999999887776


Q ss_pred             EEE
Q psy11143        131 IRI  133 (940)
Q Consensus       131 L~V  133 (940)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.27  E-value=6.3e-11  Score=107.96  Aligned_cols=86  Identities=27%  Similarity=0.487  Sum_probs=68.4

Q ss_pred             CeEEeCCCcEEEecC---CeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc-cCCCeEEEEEEEeC
Q psy11143         46 PIFIQRPVSTTYSTG---STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQNS  121 (940)
Q Consensus        46 P~~~~~p~~~~V~eG---esv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~-~~DsG~YtC~a~n~  121 (940)
                      |.|..+|.++.+.+|   +.++|.|.+.|+|.|+|+|+++|..+......++...+..|.|.++. .+|+|.|+|.|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR   81 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence            678888899888776   57999999999999999999999998654444444334456887765 69999999999999


Q ss_pred             CCceEE-EEEE
Q psy11143        122 EGSAES-VAMI  131 (940)
Q Consensus       122 ~g~~~~-~~~L  131 (940)
                      .|...+ .+.|
T Consensus        82 ~G~~~s~~a~l   92 (94)
T cd05850          82 CGTVVSREANL   92 (94)
T ss_pred             cCcEEEEEEEE
Confidence            998776 4443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.26  E-value=2.5e-11  Score=105.64  Aligned_cols=73  Identities=30%  Similarity=0.607  Sum_probs=64.0

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCCc--EEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~--~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |++++|.|.+.|.|.|.|.|+++|..+.....  ......+.|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            78999999999999999999999998865432  23344678999999999999999999999999999999987

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.26  E-value=1.6e-11  Score=105.74  Aligned_cols=71  Identities=28%  Similarity=0.535  Sum_probs=60.9

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      +.|.|.+.|.|.|.|.|+|++..+..+........++|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            47999999999999999999987765433333456799999999999999999999999999999888773

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.26  E-value=3.3e-11  Score=107.62  Aligned_cols=76  Identities=24%  Similarity=0.444  Sum_probs=64.2

Q ss_pred             CeEEEEEeecCcCCC--eEEEEeCCeeeccC---CcEEE----eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        338 SSVEIPCKPDGEPLP--RISWSKDEAEFVED---RNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       338 ~~vtL~C~v~g~P~p--~i~W~k~g~~i~~~---~~~~i----~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      ++++|.|.+.|.|.|  .|.|++++..+...   .++..    ...++|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            478999999999998  68999999887542   23221    1357899999999999999999999999999999999


Q ss_pred             EecCC
Q psy11143        409 VTGEN  413 (940)
Q Consensus       409 V~~~~  413 (940)
                      |.++|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            99864

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.26  E-value=5.4e-11  Score=108.42  Aligned_cols=82  Identities=28%  Similarity=0.622  Sum_probs=66.6

Q ss_pred             CeEEeCCCcEEEe---cCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc-cCCCeEEEEEEEeC
Q psy11143         46 PIFIQRPVSTTYS---TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQNS  121 (940)
Q Consensus        46 P~~~~~p~~~~V~---eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~-~~DsG~YtC~a~n~  121 (940)
                      |.|+.+|.++.+.   +|+.++|.|.+.|.|.|+|+|+|+|..+......++...+..|.|.++. .+|+|.|+|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS   81 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence            6778888887665   4789999999999999999999999998755444554333456888874 69999999999999


Q ss_pred             CCceEE
Q psy11143        122 EGSAES  127 (940)
Q Consensus       122 ~g~~~~  127 (940)
                      .|...+
T Consensus        82 ~G~~~S   87 (94)
T cd05848          82 IGSILS   87 (94)
T ss_pred             CCeEEe
Confidence            998765

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.26  E-value=4.2e-11  Score=104.51  Aligned_cols=74  Identities=34%  Similarity=0.634  Sum_probs=62.5

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCEeecCCCC-eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      |++++|.|.+.|.|.|+|+|+|+|..+..... .++......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            78999999999999999999999998865332 233334456799999999999999999999999888888776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.26  E-value=2.7e-11  Score=105.53  Aligned_cols=70  Identities=24%  Similarity=0.433  Sum_probs=60.4

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeeec----eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~~----sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      ++|.|.+.|.|.|.|.|+|++..+..+ .++.+...+    +|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            579999999999999999999988743 455554332    6999999999999999999999999999998875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.26  E-value=5e-11  Score=108.93  Aligned_cols=86  Identities=24%  Similarity=0.537  Sum_probs=67.9

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCC-CeEEEEE-CCEeecC-CCCeEEEee---ceEEEEcccccCCCeEEEEEEEeC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDS-DDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~-p~V~W~k-dg~~I~~-~~~~~~~~~---gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      +.+.|....+.+|++++|.|.+.|.|. |.|+|++ ++..+.. ..++.+..+   .+.|.|.+++.+|+|.|+|.|.|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            345677788999999999999999985 7999998 7776654 323333222   356899999999999999999999


Q ss_pred             C-CceEEEEEEEE
Q psy11143        122 E-GSAESVAMIRI  133 (940)
Q Consensus       122 ~-g~~~~~~~L~V  133 (940)
                      . |..+.++.|.|
T Consensus        83 ~~g~~~~s~~l~v   95 (96)
T cd05865          83 DEGESEATVNVKI   95 (96)
T ss_pred             CCCcEEEEEEEEE
Confidence            6 77777777765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.25  E-value=6.3e-11  Score=107.69  Aligned_cols=85  Identities=26%  Similarity=0.496  Sum_probs=67.3

Q ss_pred             CCeEEEcCCceeecCC---CeEEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeeeceEEEecCC-CCCCeEEEEEEEe
Q psy11143        322 APRLVVKPFDMRAPAG---SSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRTGSLRLYNIG-PQDSGLYRCTASN  396 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G---~~vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~~sL~I~~v~-~~D~G~YtC~A~N  396 (940)
                      +|.|...|.++.+.++   ..+.|.|.+.|.|.|.|+|+|++..+.. ..++. ..++.|.|.++. .+|+|.|+|.|+|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~N   79 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS-MVGGNLVINNPDKYKDAGRYVCIVSN   79 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE-EECCEEEECcCCcCCCCEEEEEEEEe
Confidence            3677777777665544   4899999999999999999999988753 33443 356899999985 6899999999999


Q ss_pred             CCeeEEE-EEEE
Q psy11143        397 LLGEDVA-EGYL  407 (940)
Q Consensus       397 ~~G~~~~-s~~L  407 (940)
                      ..|...+ .+.|
T Consensus        80 ~~G~~~s~~a~l   91 (93)
T cd05849          80 IYGKVRSREATL   91 (93)
T ss_pred             CcceEEEccEEE
Confidence            9998755 4444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.25  E-value=3.8e-11  Score=104.85  Aligned_cols=74  Identities=24%  Similarity=0.573  Sum_probs=62.8

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCEeecCCCC-eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      |+.++|.|.+.|.|.|+|+|+|+|.++..... .....++..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            78999999999999999999999999864322 222345557799999999999999999999999999888876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.24  E-value=3.2e-11  Score=107.23  Aligned_cols=76  Identities=20%  Similarity=0.327  Sum_probs=64.4

Q ss_pred             CeEEEEEeecCc--CCCeEEEEeCCeeec--c-CCcEEE----eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        338 SSVEIPCKPDGE--PLPRISWSKDEAEFV--E-DRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       338 ~~vtL~C~v~g~--P~p~i~W~k~g~~i~--~-~~~~~i----~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      +++.|.|.+.+.  +.+.|.|+|+|..|.  . ..++..    ...+.|.|.+++..|+|.|+|.|+|..++.++++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            468999999874  467999999999986  2 234444    2356899999999999999999999999999999999


Q ss_pred             EecCC
Q psy11143        409 VTGEN  413 (940)
Q Consensus       409 V~~~~  413 (940)
                      |++||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99875

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.24  E-value=6.1e-11  Score=108.05  Aligned_cols=81  Identities=28%  Similarity=0.546  Sum_probs=65.5

Q ss_pred             CeEEEcCCceeec---CCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEE-EeeeceEEEecCC-CCCCeEEEEEEEeC
Q psy11143        323 PRLVVKPFDMRAP---AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK-IHRTGSLRLYNIG-PQDSGLYRCTASNL  397 (940)
Q Consensus       323 P~i~~~p~~~~v~---~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~-i~~~~sL~I~~v~-~~D~G~YtC~A~N~  397 (940)
                      |.|+..|.++.+.   +|+.++|.|.+.|.|.|.|+|+|+|..+....... ...+++|.|.++. .+|+|.|+|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS   81 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence            6777778776554   47899999999999999999999999886443222 2346789999985 69999999999999


Q ss_pred             CeeEEE
Q psy11143        398 LGEDVA  403 (940)
Q Consensus       398 ~G~~~~  403 (940)
                      +|...+
T Consensus        82 ~G~~~S   87 (94)
T cd05848          82 IGSILS   87 (94)
T ss_pred             CCeEEe
Confidence            998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.24  E-value=3.6e-11  Score=104.62  Aligned_cols=71  Identities=25%  Similarity=0.542  Sum_probs=60.5

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecCC-CCceEEeec--C-eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHD--G-FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~~-~~~~~~~~~--g-~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      +.|.|.+.|.|.|.|+|+|++..+.. ..++.+..+  + .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            57999999999999999999999874 355555433  2 26999999999999999999999999999888765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.24  E-value=5.3e-11  Score=102.46  Aligned_cols=71  Identities=28%  Similarity=0.573  Sum_probs=62.7

Q ss_pred             eEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       246 ~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      ++.|.|.+.|.|.|.++|+|++..+....++.+..++. |.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~-l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN-LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCC-EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999999999999999999988777777666665 889999999999999999999999988887764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.24  E-value=7.2e-11  Score=108.98  Aligned_cols=81  Identities=22%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--------eeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--------HDGFVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--------~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      ..++..|+.+.|.|.+.|+|+|.|.|+|||.+|..+......        ...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            567889999999999999999999999999998755432221        113568999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy11143        126 ESVAMIRIN  134 (940)
Q Consensus       126 ~~~~~L~V~  134 (940)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.23  E-value=3.3e-11  Score=102.24  Aligned_cols=66  Identities=23%  Similarity=0.315  Sum_probs=57.4

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      ++|.|.+.|+|.|.++|+|+|..+...     ...+.|.|.++..+|+|.|+|.|+|..|..+++..|+|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc-----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            579999999999999999999988532     134589999999999999999999999988888777764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.23  E-value=4.5e-11  Score=109.13  Aligned_cols=87  Identities=29%  Similarity=0.577  Sum_probs=71.1

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-----CcEEEee---eceEEEecCCCCCCeEEEEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-----RNHKIHR---TGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-----~~~~i~~---~~sL~I~~v~~~D~G~YtC~  393 (940)
                      +|.|. .+.+..+.+|++++|.|.+.|.|.|.+.|++++..+...     .++.+..   .++|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            56665 355678899999999999999999999999998655432     2333322   35899999999999999999


Q ss_pred             EEeCCeeEEEEEEEEE
Q psy11143        394 ASNLLGEDVAEGYLTV  409 (940)
Q Consensus       394 A~N~~G~~~~s~~L~V  409 (940)
                      |.|..|..+.++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999999888865

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.23  E-value=8.1e-11  Score=106.62  Aligned_cols=83  Identities=27%  Similarity=0.524  Sum_probs=69.1

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC-CeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~-g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      .+.+.+..+.+|+++.|.|.+.|.|. .+.|+++ +..+..+.++.+..++   +|.|.++..+|+|.|+|.|+|..|..
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            44566788999999999999999998 9999984 6677666677776555   89999999999999999999999986


Q ss_pred             -EEEEEEEE
Q psy11143        402 -VAEGYLTV  409 (940)
Q Consensus       402 -~~s~~L~V  409 (940)
                       .+++.|.|
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence             55666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.23  E-value=5.8e-11  Score=102.97  Aligned_cols=71  Identities=32%  Similarity=0.433  Sum_probs=62.6

Q ss_pred             eEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       339 ~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      ++.|.|.+.|.|.|.+.|+|+|..+..+.++.+..   .++|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            47899999999999999999999987666666543   457999999999999999999999999999988865

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.22  E-value=4.2e-11  Score=106.87  Aligned_cols=76  Identities=24%  Similarity=0.413  Sum_probs=64.0

Q ss_pred             CeEEEEEeecCcCCC--eEEEEeCCeeeccCC---cE----EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        338 SSVEIPCKPDGEPLP--RISWSKDEAEFVEDR---NH----KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       338 ~~vtL~C~v~g~P~p--~i~W~k~g~~i~~~~---~~----~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      ++++|.|.+.|.|.|  .+.|+++|..+....   .+    .....++|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999988  679999998875332   11    112467899999999999999999999999999999999


Q ss_pred             EecCC
Q psy11143        409 VTGEN  413 (940)
Q Consensus       409 V~~~~  413 (940)
                      |.++|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            99874

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.22  E-value=7.5e-11  Score=105.04  Aligned_cols=78  Identities=29%  Similarity=0.537  Sum_probs=66.4

Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcE---EE-eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL  407 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~---~i-~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L  407 (940)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+.   .. ....+|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            45788999999999999999999999999988655432   22 124479999999999999999999999999999988


Q ss_pred             EE
Q psy11143        408 TV  409 (940)
Q Consensus       408 ~V  409 (940)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.22  E-value=9e-11  Score=107.39  Aligned_cols=89  Identities=33%  Similarity=0.632  Sum_probs=68.3

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC----CC-eEEEeeceE--EEE--cccccCCCeEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD----DH-VTYEHDGFV--LVL--NGVRESDAGVYN  115 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~----~~-~~~~~~gs~--L~I--~~v~~~DsG~Yt  115 (940)
                      ||.+...|.+..+.+|+.+.|.|.+.|.|.|.|.|+|+|..+...    .. .....++.+  +.+  ..++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            578889999999999999999999999999999999999988651    11 122233333  222  234789999999


Q ss_pred             EEEEeCCCceE-EEEEEEE
Q psy11143        116 CVAQNSEGSAE-SVAMIRI  133 (940)
Q Consensus       116 C~a~n~~g~~~-~~~~L~V  133 (940)
                      |.|.|..|... ..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            99999999844 4666665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.22  E-value=9.8e-11  Score=109.74  Aligned_cols=93  Identities=27%  Similarity=0.398  Sum_probs=72.8

Q ss_pred             cCCeEEEcCCceee----cCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEee-------eceEEEecCC-CCCC
Q psy11143        321 RAPRLVVKPFDMRA----PAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHR-------TGSLRLYNIG-PQDS  387 (940)
Q Consensus       321 ~~P~i~~~p~~~~v----~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~-------~~sL~I~~v~-~~D~  387 (940)
                      .+|.|...|....+    ..|..++|.|.+.|.|.|.++|+|+|..+... .++.+..       .++|.|.++. .+|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence            46666665542221    35689999999999999999999999988633 3443221       3579999997 5899


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        388 GLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       388 G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      |.|+|.|.|.+|....++.|.|..+|
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEecCCC
Confidence            99999999999999999999998764

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.22  E-value=6.8e-11  Score=102.49  Aligned_cols=73  Identities=29%  Similarity=0.534  Sum_probs=63.9

Q ss_pred             CCeEEEEEeecCcCCCeEEEEe-CCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k-~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+..+...++|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6889999999999999999997 566666556666667789999999999999999999999999988888765

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.22  E-value=1.5e-10  Score=105.57  Aligned_cols=84  Identities=26%  Similarity=0.471  Sum_probs=67.2

Q ss_pred             CeEEEcCCceeecCC---CeEEEEEeecCcCCCeEEEEeCCeeeccC--CcEEEeeeceEEEecCC-CCCCeEEEEEEEe
Q psy11143        323 PRLVVKPFDMRAPAG---SSVEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIHRTGSLRLYNIG-PQDSGLYRCTASN  396 (940)
Q Consensus       323 P~i~~~p~~~~v~~G---~~vtL~C~v~g~P~p~i~W~k~g~~i~~~--~~~~i~~~~sL~I~~v~-~~D~G~YtC~A~N  396 (940)
                      |.|...|.++.+.+|   ++++|.|.+.|+|.|.|+|+++|..+...  .++.+ .+++|.|.++. ..|+|.|+|.|+|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAGNLVINNPQKARDAGSYQCLAIN   80 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECCeEEEccCCccCcCEEEEEEEEc
Confidence            667777887776665   58999999999999999999999988633  34433 46789998865 5999999999999


Q ss_pred             CCeeEEE-EEEE
Q psy11143        397 LLGEDVA-EGYL  407 (940)
Q Consensus       397 ~~G~~~~-s~~L  407 (940)
                      ..|...+ .+.|
T Consensus        81 ~~G~~~s~~a~l   92 (94)
T cd05850          81 RCGTVVSREANL   92 (94)
T ss_pred             CcCcEEEEEEEE
Confidence            9998765 4444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.22  E-value=1.2e-10  Score=105.86  Aligned_cols=86  Identities=29%  Similarity=0.560  Sum_probs=67.5

Q ss_pred             CCeEEeCCCcEEEecCC---eEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc-cCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTYSTGS---TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGe---sv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~-~~DsG~YtC~a~n  120 (940)
                      +|.|..+|.++.+.++.   .+.|.|.+.|+|.|+|+|+|++..+..... ++...+..|.|.++. .+|+|.|+|.|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~-~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N   79 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTND-RYSMVGGNLVINNPDKYKDAGRYVCIVSN   79 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCC-eEEEECCEEEECcCCcCCCCEEEEEEEEe
Confidence            47788888888776654   899999999999999999999998854322 333334567898885 6999999999999


Q ss_pred             CCCceEE-EEEE
Q psy11143        121 SEGSAES-VAMI  131 (940)
Q Consensus       121 ~~g~~~~-~~~L  131 (940)
                      ..|...+ .+.|
T Consensus        80 ~~G~~~s~~a~l   91 (93)
T cd05849          80 IYGKVRSREATL   91 (93)
T ss_pred             CcceEEEccEEE
Confidence            9998766 4433

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.21  E-value=4.1e-11  Score=104.02  Aligned_cols=71  Identities=32%  Similarity=0.526  Sum_probs=61.9

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeec--cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE-EEEEEEEEe
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFV--EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVT  410 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~--~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V~  410 (940)
                      ++|.|.+.|.|.|.|+|+|++..+.  ...++....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            4799999999999999999998876  4556766677899999999999999999999999985 668888774

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.21  E-value=9.6e-11  Score=104.36  Aligned_cols=79  Identities=24%  Similarity=0.594  Sum_probs=65.7

Q ss_pred             EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe---EEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEE
Q psy11143         55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  131 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~---~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L  131 (940)
                      ..|.+|+.+.|.|.+.|.|.|.|.|+|+|..+......   ........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            45789999999999999999999999999998754432   222334568999999999999999999999998888777


Q ss_pred             EE
Q psy11143        132 RI  133 (940)
Q Consensus       132 ~V  133 (940)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            64

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.21  E-value=6.5e-11  Score=102.40  Aligned_cols=73  Identities=29%  Similarity=0.508  Sum_probs=65.6

Q ss_pred             CCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       244 G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      |+.+.|.|.+.|.|.|.++|+|++..+....++.+..++. |.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGS-LEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCe-EEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            6889999999999999999999999998777777766665 999999999999999999999999988887764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.21  E-value=5.9e-11  Score=103.30  Aligned_cols=71  Identities=34%  Similarity=0.671  Sum_probs=59.3

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCC-CCeEEEee--c-eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHD--G-FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~-~~~~~~~~--g-s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      |+|.|.+.|.|.|+|+|+|++..+... .++.+..+  + ..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999998643 34444333  2 25899999999999999999999999998888764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.21  E-value=1.4e-10  Score=105.09  Aligned_cols=85  Identities=24%  Similarity=0.518  Sum_probs=68.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE-CCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k-dg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      +...|.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....+..+..++  ..|.|.++..+|+|.|+|.|+|..|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            345667888999999999999999998 999998 57777666666655444  46899999999999999999999988


Q ss_pred             eEE-EEEEEE
Q psy11143        125 AES-VAMIRI  133 (940)
Q Consensus       125 ~~~-~~~L~V  133 (940)
                      ... +..|.+
T Consensus        82 ~~~~~i~l~~   91 (92)
T cd05866          82 TQEATVVLEI   91 (92)
T ss_pred             EEEEEEEEEE
Confidence            643 444443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.21  E-value=5.4e-11  Score=101.70  Aligned_cols=69  Identities=35%  Similarity=0.686  Sum_probs=60.6

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      ++|.|.+.|.|.|.+.|+|++..+.. .++.+...++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            57999999999999999999877643 4555567779999999999999999999999999999888865

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.21  E-value=8.8e-11  Score=104.73  Aligned_cols=82  Identities=32%  Similarity=0.631  Sum_probs=68.5

Q ss_pred             cCCceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeecc-CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE-EE
Q psy11143        328 KPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVE-DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AE  404 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~-~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~-~s  404 (940)
                      .|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+.. ..++.+...++|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~   81 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA   81 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence            3556788899999999998 7999999999999988765 4456665678999999999999999999999999764 45


Q ss_pred             EEEEE
Q psy11143        405 GYLTV  409 (940)
Q Consensus       405 ~~L~V  409 (940)
                      +.|.|
T Consensus        82 ~~l~V   86 (86)
T cd05724          82 ARLSV   86 (86)
T ss_pred             EEEEC
Confidence            55543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.21  E-value=6.5e-11  Score=100.45  Aligned_cols=66  Identities=26%  Similarity=0.492  Sum_probs=57.0

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~  134 (940)
                      +.|.|.+.|+|.|.++|+|||..+...      ..+..|.|.++..+|+|.|+|.|+|..|..+.+..++|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            579999999999999999999998632      234578999999999999999999999988887777664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.20  E-value=1.1e-10  Score=105.97  Aligned_cols=81  Identities=21%  Similarity=0.415  Sum_probs=69.2

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s  404 (940)
                      |..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..    .++|.|.++..+|+|.|+|.|.|.+|....+
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            456788999999999999999999999999998887665554321    2379999999999999999999999999988


Q ss_pred             EEEEE
Q psy11143        405 GYLTV  409 (940)
Q Consensus       405 ~~L~V  409 (940)
                      +.|.|
T Consensus        88 ~~v~~   92 (92)
T cd05891          88 VTVSV   92 (92)
T ss_pred             EEEEC
Confidence            87764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.20  E-value=9.8e-11  Score=106.83  Aligned_cols=85  Identities=33%  Similarity=0.573  Sum_probs=68.8

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeeeceEEEecC-----CCCCCeEEEEEEEeC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRTGSLRLYNI-----GPQDSGLYRCTASNL  397 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~~sL~I~~v-----~~~D~G~YtC~A~N~  397 (940)
                      |...|.+..+.+|+++.|.|.+.|.|.|.|+|+|+|..+....  +..+..+++|.|.++     ..+|.|.|+|.|.|.
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~   81 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND   81 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence            3456777888899999999999999999999999999886543  345555677888777     588999999999999


Q ss_pred             -CeeE-EEEEEEEE
Q psy11143        398 -LGED-VAEGYLTV  409 (940)
Q Consensus       398 -~G~~-~~s~~L~V  409 (940)
                       .|.. +..+.|.|
T Consensus        82 ~~G~~~s~~~~l~v   95 (95)
T cd05722          82 SLGSIVSRTARLTV   95 (95)
T ss_pred             ccCcEEEeeeEEeC
Confidence             9977 44666654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.20  E-value=1e-10  Score=105.82  Aligned_cols=79  Identities=22%  Similarity=0.396  Sum_probs=65.9

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe-eeceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGY  406 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~  406 (940)
                      +.++.+.+|++++|.|.+.|. .|.|.|+|++..+... +..+. ..++|.|.+++.+|+|.|+|.|.|..|...+ .+.
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~   87 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI   87 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence            446788999999999999999 9999999999887644 34443 3458999999999999999999999997554 666


Q ss_pred             EEE
Q psy11143        407 LTV  409 (940)
Q Consensus       407 L~V  409 (940)
                      |.|
T Consensus        88 L~V   90 (91)
T cd05740          88 LNV   90 (91)
T ss_pred             EEe
Confidence            766

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.20  E-value=1.2e-10  Score=105.35  Aligned_cols=81  Identities=23%  Similarity=0.411  Sum_probs=67.6

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VA  129 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~  129 (940)
                      .+..+.+.+|++++|.|.+.|. .|.|.|+|++..+... +..+..++..|.|.+++.+|+|.|+|.|.|..|...+ .+
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence            3456789999999999999999 9999999999988643 4555555667899999999999999999999998766 55


Q ss_pred             EEEE
Q psy11143        130 MIRI  133 (940)
Q Consensus       130 ~L~V  133 (940)
                      .|.|
T Consensus        87 ~L~V   90 (91)
T cd05740          87 ILNV   90 (91)
T ss_pred             EEEe
Confidence            5555

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.20  E-value=1.8e-10  Score=105.57  Aligned_cols=89  Identities=24%  Similarity=0.445  Sum_probs=70.2

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC-----CeEEEe--eceEEEEcccccCCCeEEEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-----HVTYEH--DGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-----~~~~~~--~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      .|.|...+....+..|+.++|.|.+.|.|.|.|+|++++..+....     ++.+..  ....|.|.+++.+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            4667666777767779999999999999999999999988765321     122221  124689999999999999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy11143        118 AQNSEGSAESVAMIRI  133 (940)
Q Consensus       118 a~n~~g~~~~~~~L~V  133 (940)
                      |.|..|....++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999888777654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.20  E-value=8.6e-11  Score=103.10  Aligned_cols=73  Identities=26%  Similarity=0.449  Sum_probs=63.0

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      |++++|.|.+.|.|.|.|+|++++..+....++.+..   .++|.|.++..+|+|.|+|.|.|..|...+.+.+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            6899999999999999999999998887666665543   358999999999999999999999999887766554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.19  E-value=1.9e-10  Score=103.41  Aligned_cols=79  Identities=16%  Similarity=0.330  Sum_probs=65.5

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCEeecCCC-CeEEEe----e--ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEH----D--GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~~----~--gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      |+.++|.|.+.|.|++.++|+|++..+.... ++.+..    .  .+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            7899999999999999999999999886432 333321    1  14589999999999999999999999999999999


Q ss_pred             EecccC
Q psy11143        133 INGHRA  138 (940)
Q Consensus       133 V~~~~~  138 (940)
                      |...+.
T Consensus        81 V~~~P~   86 (88)
T cd05735          81 VQEPPD   86 (88)
T ss_pred             EeCCCC
Confidence            986543

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.19  E-value=1.6e-10  Score=104.81  Aligned_cols=83  Identities=27%  Similarity=0.539  Sum_probs=69.3

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE-eec--eEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDG--FVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~-~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      .|..+++.+|+++.|.|.+.|.|.|.+.|+|++..+....+.... ..+  ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence            456788999999999999999999999999999988765554433 122  35899999999999999999999999888


Q ss_pred             EEEEEE
Q psy11143        128 VAMIRI  133 (940)
Q Consensus       128 ~~~L~V  133 (940)
                      ++.|.|
T Consensus        87 ~~~v~~   92 (92)
T cd05891          87 DVTVSV   92 (92)
T ss_pred             EEEEEC
Confidence            776654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.19  E-value=5.9e-11  Score=101.78  Aligned_cols=71  Identities=37%  Similarity=0.576  Sum_probs=59.7

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      ++|.|.+.|.|.|.+.|+|++..+...........++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   71 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence            57999999999999999999987654432222335689999999999999999999999999999988874

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.19  E-value=1.2e-10  Score=101.26  Aligned_cols=74  Identities=32%  Similarity=0.582  Sum_probs=63.1

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCEeecCCCCe-EEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~-~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      |+.++|.|.+.|.|.|+|.|+++|..+...... .....+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999999999999999999999988654332 33344567899999999999999999999999888887776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.19  E-value=1e-10  Score=100.09  Aligned_cols=69  Identities=32%  Similarity=0.551  Sum_probs=58.0

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      |++++|.|.+.|.|.|.|+|+|++..+....+... ....|.|.++.  |+|.|+|.|.|..|...+++.|+
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~   69 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT   69 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence            67899999999999999999999988765544433 34579999874  79999999999999999888763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.18  E-value=1.8e-10  Score=105.77  Aligned_cols=88  Identities=25%  Similarity=0.528  Sum_probs=68.1

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeecC-----CCCeEEEe--eceEEEEcccccCCCeEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLDS-----DDHVTYEH--DGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~~-----~~~~~~~~--~gs~L~I~~v~~~DsG~Yt  115 (940)
                      +|.+. .+.+.++.+|+.++|.|.+.|.|.|.|.|+|+  +..+..     ..++.+..  ....|.|.+++.+|+|.|+
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            46654 46789999999999999999999999999994  444432     12233322  2346899999999999999


Q ss_pred             EEEEeCCCceEEEEEEEE
Q psy11143        116 CVAQNSEGSAESVAMIRI  133 (940)
Q Consensus       116 C~a~n~~g~~~~~~~L~V  133 (940)
                      |.|.|..|....++.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999998887766653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.18  E-value=9.6e-11  Score=100.87  Aligned_cols=70  Identities=24%  Similarity=0.363  Sum_probs=60.8

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      |.|.|.+.|.|.|.+.|+|+|..+..+.++. ...++|.|.++..+|+|.|+|.|.|..|..+.+..+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK-KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE-cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            5799999999999999999999987665443 345789999999999999999999999998888877764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.17  E-value=1.5e-10  Score=101.92  Aligned_cols=79  Identities=19%  Similarity=0.437  Sum_probs=65.4

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  131 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L  131 (940)
                      |....+.+|+.+.|.|.+.+. .+.|.|+|+|.+|....+.++.  +..|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v   77 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV   77 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence            466788999999999999986 5689999999999766555543  4568999999999999999999998887666655


Q ss_pred             EE
Q psy11143        132 RI  133 (940)
Q Consensus       132 ~V  133 (940)
                      +|
T Consensus        78 ~V   79 (79)
T cd04973          78 NV   79 (79)
T ss_pred             eC
Confidence            43

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.17  E-value=2.1e-10  Score=104.66  Aligned_cols=88  Identities=25%  Similarity=0.442  Sum_probs=69.3

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC-----CeEEEe--eceEEEEcccccCCCeEEEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-----HVTYEH--DGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-----~~~~~~--~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      +|.+. .+.+..+.+|+.+.|.|.+.|.|.|.|.|++++..+....     +..+..  ....|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            46664 4567889999999999999999999999999987665321     222221  234689999999999999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy11143        118 AQNSEGSAESVAMIRI  133 (940)
Q Consensus       118 a~n~~g~~~~~~~L~V  133 (940)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999877776653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.17  E-value=2e-10  Score=102.43  Aligned_cols=80  Identities=35%  Similarity=0.637  Sum_probs=65.3

Q ss_pred             CCCcEEEecCCeEEEEEEe-eccCCCeEEEEECCEeecCC-CCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-
Q psy11143         51 RPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-  127 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~~-~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-  127 (940)
                      +|....+.+|+++.|.|.+ .|.|.|.|.|+|+|..+... .+..... +..|.|.+++.+|+|.|+|.|.|..|...+ 
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-DGNLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-CCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence            5678889999999999998 78999999999999988753 2333333 346799999999999999999999998765 


Q ss_pred             EEEE
Q psy11143        128 VAMI  131 (940)
Q Consensus       128 ~~~L  131 (940)
                      .+.|
T Consensus        81 ~~~l   84 (86)
T cd05724          81 AARL   84 (86)
T ss_pred             eEEE
Confidence            4443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.17  E-value=1.4e-10  Score=102.01  Aligned_cols=79  Identities=25%  Similarity=0.490  Sum_probs=67.6

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      |.+..+.+|++++|.|.+.+. .+.|.|+|+|.++..+.++.+. .++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~   78 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN   78 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence            345678899999999999986 5789999999998777666654 46899999999999999999999999988777665


Q ss_pred             E
Q psy11143        409 V  409 (940)
Q Consensus       409 V  409 (940)
                      |
T Consensus        79 V   79 (79)
T cd04973          79 V   79 (79)
T ss_pred             C
Confidence            4

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.17  E-value=1.9e-10  Score=99.63  Aligned_cols=72  Identities=26%  Similarity=0.536  Sum_probs=61.3

Q ss_pred             eEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         62 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        62 sv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      ++.|.|.+.|.|.|.+.|+|+|..+....+..+.  .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            4789999999999999999999998666555554  33567899999999999999999999999888777654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.16  E-value=1e-10  Score=100.32  Aligned_cols=69  Identities=25%  Similarity=0.459  Sum_probs=58.7

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      +.|.|.+.|.|.|.+.|+|+|.++....++  .....|.|.++..+|+|.|+|.|.|..|..+...++.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            468999999999999999999998755332  345589999999999999999999999988877776654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.16  E-value=2.4e-10  Score=104.96  Aligned_cols=85  Identities=26%  Similarity=0.355  Sum_probs=69.9

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccC--CcEEEeee-------ceEEEecCCCCC-CeEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVED--RNHKIHRT-------GSLRLYNIGPQD-SGLY  390 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~--~~~~i~~~-------~sL~I~~v~~~D-~G~Y  390 (940)
                      ||.+ ..+....+.+|++++|.|.+.|.|.| .|.|++++..+...  .++.+...       ++|.|.++..+| .|.|
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            4555 44566778999999999999999999 69999999887643  46666543       379999999955 8999


Q ss_pred             EEEEEeCCeeEEEEEEE
Q psy11143        391 RCTASNLLGEDVAEGYL  407 (940)
Q Consensus       391 tC~A~N~~G~~~~s~~L  407 (940)
                      +|.|.|..|.+...+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998888766

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.16  E-value=1.6e-10  Score=99.46  Aligned_cols=70  Identities=24%  Similarity=0.509  Sum_probs=59.7

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~  134 (940)
                      +.|.|.+.|.|.|.+.|+|+|..+....  ++...+..|.|.+++.+|+|.|+|.|.|..|..+.+..++|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~--~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKN--RTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC--EEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4799999999999999999999987653  334455678999999999999999999999988887777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.15  E-value=1.5e-10  Score=102.22  Aligned_cols=74  Identities=24%  Similarity=0.542  Sum_probs=61.2

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceE
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  126 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~  126 (940)
                      |..+|.++.+.+|+.+.|.|.+.|.|.| +|.|+|+|.++...    ....++.|.|..+  .|+|.|+|.|+|..|...
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence            3457888999999999999999999999 79999999988641    1223456788877  588999999999999776


Q ss_pred             E
Q psy11143        127 S  127 (940)
Q Consensus       127 ~  127 (940)
                      +
T Consensus        75 s   75 (81)
T cd05749          75 S   75 (81)
T ss_pred             e
Confidence            5

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.15  E-value=1.9e-10  Score=100.11  Aligned_cols=71  Identities=28%  Similarity=0.550  Sum_probs=59.6

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecCCC-CceEEeec--C-eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHD--G-FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~~~-~~~~~~~~--g-~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      ++|.|.+.|.|.|.|+|+|++..+... .++.+...  + .+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            479999999999999999999998743 45554333  2 25999999999999999999999999988887764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.15  E-value=1.3e-10  Score=101.77  Aligned_cols=68  Identities=28%  Similarity=0.388  Sum_probs=57.5

Q ss_pred             EEEEeecCcCCCeEEEEeCCeeeccCCcEEE--------eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       341 tL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i--------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      .|.|.+.|+|.|+|+|+|+|..+..+.+...        ...++|.|.++..+|+|.|+|.|+|..|++.+++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            3789999999999999999999976654321        1245899999999999999999999999988887764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.14  E-value=3e-10  Score=99.60  Aligned_cols=74  Identities=27%  Similarity=0.473  Sum_probs=62.2

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee--ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~--gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      |+++.|.|.+.|.|.|.|.|++++..+....+..+...  ...|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            78999999999999999999999988876655554422  356899999999999999999999998887665554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.14  E-value=3.1e-10  Score=101.36  Aligned_cols=75  Identities=29%  Similarity=0.424  Sum_probs=61.6

Q ss_pred             CeEEEEEEeeccCCC--eEEEEECCEeecCCC---Ce-EEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         61 STSRITCLVEGHPLP--QMTWFHDGNSLDSDD---HV-TYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        61 esv~L~C~v~g~P~p--~V~W~kdg~~I~~~~---~~-~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      +.++|.|.+.|.|.|  +|+|+++|..+....   +. ++.  .....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999887  689999999886432   22 112  2345689999999999999999999999999999999


Q ss_pred             Eec
Q psy11143        133 ING  135 (940)
Q Consensus       133 V~~  135 (940)
                      |.+
T Consensus        81 V~~   83 (85)
T cd05854          81 VRG   83 (85)
T ss_pred             EEC
Confidence            976

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.14  E-value=1.4e-10  Score=99.11  Aligned_cols=68  Identities=31%  Similarity=0.627  Sum_probs=60.1

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEE
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  315 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l  315 (940)
                      |.|.|.+.|.|.|.|+|+|+|..+....++.+..++ .|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG-YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC-EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            579999999999999999999999877777665555 49999999999999999999999998877655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.13  E-value=2.1e-10  Score=98.72  Aligned_cols=70  Identities=33%  Similarity=0.556  Sum_probs=59.0

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      +.|.|.+.|.|.|.+.|+|++..+.... ......+.+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999999999999999998776543 233344456999999999999999999999999888877776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.13  E-value=2.7e-10  Score=99.72  Aligned_cols=71  Identities=30%  Similarity=0.620  Sum_probs=57.5

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCC-CeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      |+|.|.+.|.|.|.|+|+|+|..+.... ...+......|.|.+++.+|+|.|+|.|.|..|...++..++|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            5799999999999999999999886543 3344444457899999999999999999999998766444444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.13  E-value=1.7e-10  Score=104.29  Aligned_cols=74  Identities=32%  Similarity=0.557  Sum_probs=58.5

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCC----eeeccCC--cEEE----------eeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDE----AEFVEDR--NHKI----------HRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g----~~i~~~~--~~~i----------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      |++++|.|.+.|.|.|.|+|+|++    ..+....  ....          .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999963    3332111  1111          11247999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy11143        401 DVAEGYLTVT  410 (940)
Q Consensus       401 ~~~s~~L~V~  410 (940)
                      ..+++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999999874

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.13  E-value=2.4e-10  Score=100.67  Aligned_cols=78  Identities=24%  Similarity=0.575  Sum_probs=63.5

Q ss_pred             EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      ..+..|+++.|.|.+.|.|.|.+.|+|++..+..............|.|.+++.+|+|.|+|.|.|..|.......|.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            446789999999999999999999999999876543333233445689999999999999999999999877666554

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.13  E-value=2.4e-10  Score=99.34  Aligned_cols=70  Identities=30%  Similarity=0.599  Sum_probs=58.2

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeec---cCCcEEEe-eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFV---EDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~---~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      ++|.|.+.|.|.|.|+|+|++....   ...++.+. ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4799999999999999999986422   22344433 3468999999999999999999999999999999987

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.12  E-value=3.8e-10  Score=102.96  Aligned_cols=84  Identities=32%  Similarity=0.574  Sum_probs=66.3

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC--eEEEeeceEEEEccc-----ccCCCeEEEEEEEe
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGV-----RESDAGVYNCVAQN  120 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~--~~~~~~gs~L~I~~v-----~~~DsG~YtC~a~n  120 (940)
                      |..+|.+..+.+|+++.|.|.+.|.|.|.|+|+|+|..+.....  .....++. |.|.++     ..+|.|.|+|.|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~-l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGS-LLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCe-EEEeeeeccCCCCCcCEEEEEEEEC
Confidence            56678888999999999999999999999999999999875443  23334444 466666     58999999999999


Q ss_pred             C-CCceEE-EEEEE
Q psy11143        121 S-EGSAES-VAMIR  132 (940)
Q Consensus       121 ~-~g~~~~-~~~L~  132 (940)
                      . .|...+ .+.|.
T Consensus        81 ~~~G~~~s~~~~l~   94 (95)
T cd05722          81 DSLGSIVSRTARLT   94 (95)
T ss_pred             CccCcEEEeeeEEe
Confidence            9 888754 55444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.12  E-value=2.4e-10  Score=97.97  Aligned_cols=69  Identities=25%  Similarity=0.442  Sum_probs=58.5

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      +.|.|.+.|+|.|.++|+|+|.++....++  . .+..|.|.++..+|+|.|+|.|.|..|..+....+.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~-~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K-RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c-cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            468999999999999999999999765432  2 34469999999999999999999999988887776664

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.12  E-value=6.9e-10  Score=104.02  Aligned_cols=93  Identities=23%  Similarity=0.367  Sum_probs=70.6

Q ss_pred             eCCCeEEeCCCcEEE-e---cCCeEEEEEEeeccCCCeEEEEECCEeecCCC-CeEEE--e----eceEEEEcccc-cCC
Q psy11143         43 NAPPIFIQRPVSTTY-S---TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYE--H----DGFVLVLNGVR-ESD  110 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V-~---eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~--~----~gs~L~I~~v~-~~D  110 (940)
                      ..+|.|...|....+ .   .|..++|.|.+.|.|.+.++|+|+|..+.... +....  .    .++.|.|.++. .+|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            446776666553222 2   46799999999999999999999999986432 22222  1    13568999997 699


Q ss_pred             CeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        111 AGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       111 sG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      .|.|+|.|.|..|.....+.|.+..
T Consensus        82 ~G~Y~C~A~N~~G~~~~~i~L~~~~  106 (109)
T cd05773          82 YALFTCTAHNSLGEDSLDIQLVSTS  106 (109)
T ss_pred             CEEEEEEEEeCCccCcEEEEEEecC
Confidence            9999999999999998888888765

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.11  E-value=3.9e-10  Score=98.70  Aligned_cols=72  Identities=29%  Similarity=0.616  Sum_probs=58.8

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecCCCC-ceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~-~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      ++|.|.+.|.|.|.|+|+|+|.++.... .+.+...+.+|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            5799999999999999999999986543 34444444569999999999999999999999987655555553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.11  E-value=3.4e-10  Score=100.06  Aligned_cols=69  Identities=26%  Similarity=0.373  Sum_probs=57.6

Q ss_pred             EEEEeecCcCCCeEEEEeCCeeeccCCcEEEe----------eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       341 tL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~----------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      .|.|.+.|+|.|.|+|+|+|..+..+.+....          ..++|.|.++..+|+|.|+|.|.|.+|..++++.|..
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            37899999999999999999998766543221          1447999999999999999999999999998877653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.11  E-value=2.5e-10  Score=100.82  Aligned_cols=77  Identities=21%  Similarity=0.459  Sum_probs=61.5

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEE-
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA-  403 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-  403 (940)
                      ...|.++.+.+|+++.|.|.+.|.|.| .|.|+|+|.++...  .. ...+.|.|..+  .|+|.|.|.|+|.+|...+ 
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~-~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~   76 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA-PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR   76 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC-CCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence            345778899999999999999999999 79999999987541  11 13457999887  4789999999999997664 


Q ss_pred             EEEE
Q psy11143        404 EGYL  407 (940)
Q Consensus       404 s~~L  407 (940)
                      .+.|
T Consensus        77 ~a~~   80 (81)
T cd05749          77 TGTV   80 (81)
T ss_pred             eEEe
Confidence            4443

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.10  E-value=6.1e-10  Score=101.02  Aligned_cols=83  Identities=28%  Similarity=0.514  Sum_probs=64.7

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEe-CCeeeccCCcEEEeee----ceEEEecCCCCCCeEEEEEEEeCCe-
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRT----GSLRLYNIGPQDSGLYRCTASNLLG-  399 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k-~g~~i~~~~~~~i~~~----~sL~I~~v~~~D~G~YtC~A~N~~G-  399 (940)
                      .+.|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+...    ++|+|.+++.+|+|.|+|.|.|..| 
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            44566788999999999999999974 999998 5665655444444332    3799999999999999999999965 


Q ss_pred             eEEEEEEEEE
Q psy11143        400 EDVAEGYLTV  409 (940)
Q Consensus       400 ~~~~s~~L~V  409 (940)
                      ...+++.|.|
T Consensus        83 ~~~~sv~l~~   92 (92)
T cd04977          83 ESEATVNLKI   92 (92)
T ss_pred             cceeEEEEEC
Confidence            4566666654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.10  E-value=3.3e-10  Score=102.31  Aligned_cols=73  Identities=33%  Similarity=0.532  Sum_probs=58.8

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeC----CeeeccCCc--EEEe----------eeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKD----EAEFVEDRN--HKIH----------RTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~----g~~i~~~~~--~~i~----------~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      |++++|.|.+.|.|.|.|+|+|+    +..+..+..  ..+.          ..++|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            68899999999999999999984    444432221  1111          1247999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy11143        401 DVAEGYLTV  409 (940)
Q Consensus       401 ~~~s~~L~V  409 (940)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999999987

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.10  E-value=1.1e-09  Score=107.43  Aligned_cols=112  Identities=19%  Similarity=0.381  Sum_probs=82.0

Q ss_pred             EEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCc-CC-CeEEEEeCCe
Q psy11143        284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEA  361 (940)
Q Consensus       284 sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~-p~i~W~k~g~  361 (940)
                      +|+|.+++.+|+|.|+|.+.+..+.....+.|.|.  .+|.+...+......+|+.++|.|.+.|. |. +.|.|++++.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~--~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~   79 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS--EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP   79 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe--cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence            48999999999999999999988887777777775  67888777765555578999999999996 54 3899999985


Q ss_pred             eecc-----CC----cE------EEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        362 EFVE-----DR----NH------KIHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       362 ~i~~-----~~----~~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      ....     ..    ..      .....+.|.+..-...+...|+|.|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~  130 (139)
T cd05771          80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV  130 (139)
T ss_pred             CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence            4111     11    01      1122335666655555677899999875

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.10  E-value=8.7e-10  Score=100.04  Aligned_cols=84  Identities=25%  Similarity=0.549  Sum_probs=63.6

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE-CCEeecCCCCeEEEee---ceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k-dg~~I~~~~~~~~~~~---gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +.+.|....+.+|+++.|.|.+.|.|+ .+.|++ ++..+....+......   ...|+|.+++.+|+|.|+|.|.|..|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            345677788999999999999999875 999998 6666654444433322   24689999999999999999999865


Q ss_pred             c-eEEEEEEE
Q psy11143        124 S-AESVAMIR  132 (940)
Q Consensus       124 ~-~~~~~~L~  132 (940)
                      . .+.++.|.
T Consensus        82 ~~~~~sv~l~   91 (92)
T cd04977          82 TESEATVNLK   91 (92)
T ss_pred             CcceeEEEEE
Confidence            5 34454443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.09  E-value=4.2e-10  Score=99.19  Aligned_cols=77  Identities=25%  Similarity=0.585  Sum_probs=63.6

Q ss_pred             EEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEE
Q psy11143        240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  316 (940)
Q Consensus       240 ~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~  316 (940)
                      ....|+.+.|.|.+.|.|.|.++|++++..+.............+|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            45579999999999999999999999999886554433333445699999999999999999999999877766654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.08  E-value=5.9e-10  Score=99.16  Aligned_cols=76  Identities=22%  Similarity=0.368  Sum_probs=61.8

Q ss_pred             CeEEEEEEeec--cCCCeEEEEECCEeecCC-CCeEEEe-----eceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         61 STSRITCLVEG--HPLPQMTWFHDGNSLDSD-DHVTYEH-----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        61 esv~L~C~v~g--~P~p~V~W~kdg~~I~~~-~~~~~~~-----~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      +++.|.|.+.+  .+++.|.|+|||+.|... ...++..     ....|+|.+++.+|+|.|+|.|.|..+....++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            47899999977  447799999999999632 2223322     345689999999999999999999999999999999


Q ss_pred             Eecc
Q psy11143        133 INGH  136 (940)
Q Consensus       133 V~~~  136 (940)
                      |.++
T Consensus        81 V~~p   84 (85)
T cd05853          81 VRGP   84 (85)
T ss_pred             EecC
Confidence            9864

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.07  E-value=8.6e-10  Score=94.35  Aligned_cols=68  Identities=31%  Similarity=0.650  Sum_probs=56.3

Q ss_pred             CCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEE
Q psy11143        244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  315 (940)
Q Consensus       244 G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l  315 (940)
                      |++++|.|.+.|.|.|.|+|+|++.++....+...  ....|.|.++.  |+|.|+|.|.|..|..+.++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~--~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV--GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec--CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999998866544332  33358898874  7899999999999998877665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.07  E-value=5.8e-10  Score=96.95  Aligned_cols=71  Identities=32%  Similarity=0.659  Sum_probs=58.1

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeec-C--CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSL-D--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l-~--~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      ++|.|.+.|.|.|.|+|+|++... +  ...++.+...+..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            479999999999999999998643 2  2234444445557999999999999999999999999888888776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.06  E-value=7.2e-10  Score=100.07  Aligned_cols=75  Identities=28%  Similarity=0.557  Sum_probs=63.2

Q ss_pred             CCeEEEEEEEeeeCCCeEEEEECCeec--------CCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEE
Q psy11143        244 GSTSRITCLVEGHPLPQMTWFHDGNSL--------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  315 (940)
Q Consensus       244 G~~v~L~C~v~G~P~p~ItW~k~g~~l--------~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l  315 (940)
                      |+.+.|.|.+.|.|.|.+.|+|++..+        ....++.+..++ .|+|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-DLTITNVQRSDVGYYICQTLNVAGSILTKAYL   79 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC-eEEEeeCChhhCEEEEEEEEcCCCceEEEEEE
Confidence            788999999999999999999998653        123445554445 49999999999999999999999999999998


Q ss_pred             EEee
Q psy11143        316 RING  319 (940)
Q Consensus       316 ~V~~  319 (940)
                      .|..
T Consensus        80 ~V~~   83 (90)
T cd05726          80 EVTD   83 (90)
T ss_pred             EEee
Confidence            8864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.06  E-value=8.1e-10  Score=95.68  Aligned_cols=73  Identities=25%  Similarity=0.571  Sum_probs=60.6

Q ss_pred             CCeEEEEEEEeeeCCCeEEEEE-CCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        244 GSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       244 G~~v~L~C~v~G~P~p~ItW~k-~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+.....++ +|.|..+..+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG-TLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC-EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7889999999999999999997 57666655555554455 4999999999999999999999998877766654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.06  E-value=4.9e-10  Score=102.06  Aligned_cols=81  Identities=17%  Similarity=0.297  Sum_probs=65.9

Q ss_pred             CcEEEecCCeEEEEEEeec-----cCCCeEEEEECCEeecC--CCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         53 VSTTYSTGSTSRITCLVEG-----HPLPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g-----~P~p~V~W~kdg~~I~~--~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      ....+.+|+++.|.|.+.+     .|.+.|.|||++..+..  ....++...+..|.|.++..+|+|.|+|.++|..|..
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~   86 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM   86 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence            4566789999999999998     68889999999976532  2234554455678999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy11143        126 ESVAMIRI  133 (940)
Q Consensus       126 ~~~~~L~V  133 (940)
                      +..+.|+|
T Consensus        87 ~~~~~L~v   94 (94)
T cd05756          87 KVSISLTV   94 (94)
T ss_pred             EEEEEEEC
Confidence            88776654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.06  E-value=8e-10  Score=98.58  Aligned_cols=76  Identities=22%  Similarity=0.380  Sum_probs=61.2

Q ss_pred             CeEEEEEEeeccCCC--eEEEEECCEeecCCCC---e-EE-E-eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         61 STSRITCLVEGHPLP--QMTWFHDGNSLDSDDH---V-TY-E-HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        61 esv~L~C~v~g~P~p--~V~W~kdg~~I~~~~~---~-~~-~-~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      ++++|.|.+.|.|.|  ++.|+++|..+.....   + +. . .....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            478999999999877  6799999998864321   1 11 1 2345679999999999999999999999998899999


Q ss_pred             Eecc
Q psy11143        133 INGH  136 (940)
Q Consensus       133 V~~~  136 (940)
                      |.++
T Consensus        81 V~~p   84 (85)
T cd04970          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            8763

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.05  E-value=7.7e-10  Score=96.02  Aligned_cols=70  Identities=34%  Similarity=0.666  Sum_probs=57.8

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecC--CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCc-eeEEEEEE
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA-ESVAMIRI  317 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~--~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~-~~s~~l~V  317 (940)
                      ++|.|.+.|.|.|.|+|+|++.++.  ...++....++ .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g-~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG-ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc-EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999999999999887  44455554444 49999999999999999999999985 45666655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.05  E-value=6.3e-10  Score=95.05  Aligned_cols=69  Identities=28%  Similarity=0.535  Sum_probs=57.3

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      ++|.|.+.|.|.|.+.|+|++..++.. +.... .+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            579999999999999999998877543 33433 4446799999999999999999999999888777654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.05  E-value=1.3e-09  Score=98.52  Aligned_cols=82  Identities=29%  Similarity=0.613  Sum_probs=64.6

Q ss_pred             CeEEeCCCcEEEecC---CeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc-cCCCeEEEEEEEeC
Q psy11143         46 PIFIQRPVSTTYSTG---STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQNS  121 (940)
Q Consensus        46 P~~~~~p~~~~V~eG---esv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~-~~DsG~YtC~a~n~  121 (940)
                      |.|..+|.++.+.+|   +.+.|.|.+.|+|.|+|+|+|++..+......++...+..|.|.++. .+|+|.|+|.|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~   81 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI   81 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence            677888888776554   57999999999999999999999988543333444333456888876 59999999999999


Q ss_pred             CCceEE
Q psy11143        122 EGSAES  127 (940)
Q Consensus       122 ~g~~~~  127 (940)
                      .|...+
T Consensus        82 ~G~~~S   87 (91)
T cd04967          82 VGTVLS   87 (91)
T ss_pred             CCEEEe
Confidence            997655

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.05  E-value=7.1e-10  Score=97.65  Aligned_cols=73  Identities=37%  Similarity=0.617  Sum_probs=59.3

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCe---e--eccC---CcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEA---E--FVED---RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~---~--i~~~---~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      |++++|.|.+.|.|.|.+.|+|++.   .  +...   .++.....++|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7899999999999999999999732   1  1111   123334457899999999999999999999999999998887


Q ss_pred             E
Q psy11143        409 V  409 (940)
Q Consensus       409 V  409 (940)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            5

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PLN02283 alpha-dioxygenase

Probab=99.05  E-value=4.1e-11  Score=142.61  Aligned_cols=40  Identities=30%  Similarity=0.431  Sum_probs=35.7

Q ss_pred             cccccccCCcccCCCCCcccccchhhhcccccc-ccCCCcC
Q psy11143        666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPI-YENGFST  705 (940)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  705 (940)
                      ..+|||.||+|||+.||.||++.|+|+|++||. |.+|++.
T Consensus        82 ~~~yRt~DGscNNl~~P~~G~agt~f~R~v~p~~~~~~~~~  122 (633)
T PLN02283         82 EYPYRTADGKCNDPFNEGAGSQGTFFGRNMPPVDQKDKLLD  122 (633)
T ss_pred             cccccCCCCCCcCCCCcccccCCCccccCCCccccCCCCCC
Confidence            689999999999999999999999999999997 5555543

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.04  E-value=8e-10  Score=95.14  Aligned_cols=68  Identities=19%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      +.|.|.+.|.|.|++.|+|++.++... .++.. ...+|.|.++..+|+|.|+|.|+|..+.......++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            479999999999999999999988755 33333 445899999999999999999999866655554444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.04  E-value=1.4e-09  Score=96.21  Aligned_cols=69  Identities=28%  Similarity=0.452  Sum_probs=56.3

Q ss_pred             EEEEEeeccCCCeEEEEECCEeecCCCCeEEE--e-------eceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--H-------DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        64 ~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~-------~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      .|.|.+.|+|.|+|+|+|+|..|.........  .       ....|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            37899999999999999999999766543222  1       123589999999999999999999999988876654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.03  E-value=6.4e-10  Score=97.74  Aligned_cols=70  Identities=31%  Similarity=0.528  Sum_probs=56.0

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTV  409 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V  409 (940)
                      |+|.|.+.|+|.|.|.|++++...        ....++.+..+++|.|.++..+|+|.|+|.|.|..|.. +.++.|+|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            579999999999999999974321        12345555667899999999999999999999999977 44555553

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.03  E-value=8.3e-10  Score=94.60  Aligned_cols=70  Identities=33%  Similarity=0.651  Sum_probs=58.7

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      +.|.|.+.|.|.|.+.|++++..+... +......+..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            479999999999999999999887643 3333344556999999999999999999999999888877766

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.03  E-value=6.5e-10  Score=100.39  Aligned_cols=74  Identities=30%  Similarity=0.490  Sum_probs=57.5

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECC----EeecCCCCe--EEE---------eeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDG----NSLDSDDHV--TYE---------HDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg----~~I~~~~~~--~~~---------~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+......  ...         .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999964    333211111  111         12346899999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy11143        125 AESVAMIRI  133 (940)
Q Consensus       125 ~~~~~~L~V  133 (940)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888888877

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.02  E-value=1.3e-09  Score=93.85  Aligned_cols=70  Identities=29%  Similarity=0.485  Sum_probs=55.5

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      +.|.|.+.|.|.|++.|+|+|.++.... .++..++..|.|.+++.+|+|.|+|.|.|..........+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC-SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCC-cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            4799999999999999999999987542 234445557899999999999999999998665555444443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.02  E-value=1.5e-09  Score=95.16  Aligned_cols=69  Identities=28%  Similarity=0.492  Sum_probs=55.8

Q ss_pred             EEEEEeeccCCCeEEEEECCEeecCCCCeEEE-------eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-------HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        64 ~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~-------~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      .|.|.+.|+|.|+|+|+|||.+|..+......       .....|.|.++..+|+|.|+|.|+|..|....+..+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            47899999999999999999999765543211       1224589999999999999999999999887766554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.02  E-value=2.3e-09  Score=96.99  Aligned_cols=80  Identities=29%  Similarity=0.544  Sum_probs=63.3

Q ss_pred             CeEEEcCCceeecC---CCeEEEEEeecCcCCCeEEEEeCCeeecc--CCcEEEeeeceEEEecCCC-CCCeEEEEEEEe
Q psy11143        323 PRLVVKPFDMRAPA---GSSVEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIHRTGSLRLYNIGP-QDSGLYRCTASN  396 (940)
Q Consensus       323 P~i~~~p~~~~v~~---G~~vtL~C~v~g~P~p~i~W~k~g~~i~~--~~~~~i~~~~sL~I~~v~~-~D~G~YtC~A~N  396 (940)
                      |.|...|.++.+..   |+++.|.|.+.|+|.|.|+|+|++..+..  ..++. ..++.|.|.++.. +|+|.|+|.|.|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N   80 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLASN   80 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEEc
Confidence            66777777765544   46799999999999999999999988743  23333 3457899998875 899999999999


Q ss_pred             CCeeEEE
Q psy11143        397 LLGEDVA  403 (940)
Q Consensus       397 ~~G~~~~  403 (940)
                      ..|....
T Consensus        81 ~~G~~~S   87 (91)
T cd04967          81 IVGTVLS   87 (91)
T ss_pred             CCCEEEe
Confidence            9997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.01  E-value=2.7e-09  Score=97.98  Aligned_cols=86  Identities=31%  Similarity=0.550  Sum_probs=67.8

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCC--CeEEEee------ceEEEEcccccCC-CeEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDD--HVTYEHD------GFVLVLNGVRESD-AGVY  114 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~--~~~~~~~------gs~L~I~~v~~~D-sG~Y  114 (940)
                      ||.+ ..+....+.+|+++.|.|.+.|.|.| .|.|++++..+....  ++.+...      .+.|.|.++..+| .|.|
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            5655 44567788999999999999999998 699999999886543  3444322      1468999999955 8999


Q ss_pred             EEEEEeCCCceEEEEEE
Q psy11143        115 NCVAQNSEGSAESVAMI  131 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L  131 (940)
                      +|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999987776554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.01  E-value=1.7e-09  Score=94.15  Aligned_cols=72  Identities=31%  Similarity=0.675  Sum_probs=61.2

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCCC--eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~--~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~  134 (940)
                      +.|.|.+.|.|.|.|.|+|++..+.....  .....++..|.|.++..+|.|.|+|.+.|..|..+..+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            46999999999999999999998865433  3333556678999999999999999999999999988888775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.00  E-value=2.4e-09  Score=96.72  Aligned_cols=74  Identities=34%  Similarity=0.539  Sum_probs=58.0

Q ss_pred             CCeEEEEEEeeccCCCeEEEEEC----CEeecCCCC--eEEEe---------eceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHD----GNSLDSDDH--VTYEH---------DGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kd----g~~I~~~~~--~~~~~---------~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      |+.++|.|.+.|.|.|.|+|+|+    |..+.....  ..+..         ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    444432221  11111         1246899999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy11143        125 AESVAMIRI  133 (940)
Q Consensus       125 ~~~~~~L~V  133 (940)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.99  E-value=2.4e-09  Score=93.22  Aligned_cols=72  Identities=31%  Similarity=0.682  Sum_probs=62.0

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecCCCC--ceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~--~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      +.|.|.+.|.|.|.+.|+|++..+....  ++....++..|.|.++..+|.|.|+|.|.|..|..+.++.|.|+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3689999999999999999999886543  34445556679999999999999999999999999999888875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.98  E-value=1.7e-09  Score=98.52  Aligned_cols=78  Identities=23%  Similarity=0.250  Sum_probs=64.4

Q ss_pred             ceeecCCCeEEEEEeecC-----cCCCeEEEEeCCeeecc----CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        331 DMRAPAGSSVEIPCKPDG-----EPLPRISWSKDEAEFVE----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g-----~P~p~i~W~k~g~~i~~----~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      ...+.+|+.+.|.|.+.|     .|.|.|.|+|++..+..    ..++. ...++|.|.++..+|+|.|+|.+.|..|..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~   86 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMH-QQKDLLWFLPAALEDSGLYTCVVRNSTYCM   86 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceee-ecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence            346678999999999999     68899999999875432    22322 235789999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy11143        402 VAEGYLTV  409 (940)
Q Consensus       402 ~~s~~L~V  409 (940)
                      ..++.|.|
T Consensus        87 ~~~~~L~v   94 (94)
T cd05756          87 KVSISLTV   94 (94)
T ss_pred             EEEEEEEC
Confidence            99988875

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.97  E-value=1.6e-09  Score=93.88  Aligned_cols=67  Identities=27%  Similarity=0.551  Sum_probs=55.6

Q ss_pred             EEEEEeecC-cCCCeEEEEeCCeeeccCCcEE---Ee---eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        340 VEIPCKPDG-EPLPRISWSKDEAEFVEDRNHK---IH---RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       340 vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~---i~---~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      ++|.|.+.| .|.|.+.|+|++..+.......   +.   ..++|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 9999999999999886554322   21   2457999999999999999999999999887764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.97  E-value=1.7e-09  Score=94.82  Aligned_cols=67  Identities=25%  Similarity=0.467  Sum_probs=56.7

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCC-CeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~-p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      |.+...|....+.+|++|+|+|.+.+.|. ..+.|+|||..+..        .+..|.|.++ .+|+|.|+|.|.+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            45677888899999999999999998775 47999999998732        2445799999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.94  E-value=2.6e-09  Score=93.72  Aligned_cols=67  Identities=22%  Similarity=0.362  Sum_probs=57.1

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      |.+...|....+.+|++|+|.|.+.+.|.+ .+.|+|+|..+..       ..++|.|.++ .+|+|.|+|.|.|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            456677777889999999999999998875 7999999987732       3458999999 99999999999885

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.93  E-value=4.4e-09  Score=93.80  Aligned_cols=78  Identities=26%  Similarity=0.486  Sum_probs=64.8

Q ss_pred             EcCCceeecCCCeEEEEEeecC-cCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                      ..|....+.+|++++|.|.+.+ .|.+.+.|++++..+...   .....+.|.|.++..+|+|.|+|.|.|..|...+++
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~   82 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA   82 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence            3455678899999999999975 788899999998765332   123457899999999999999999999999999988


Q ss_pred             EE
Q psy11143        406 YL  407 (940)
Q Consensus       406 ~L  407 (940)
                      .|
T Consensus        83 ~l   84 (85)
T cd05754          83 TL   84 (85)
T ss_pred             EE
Confidence            76

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.93  E-value=8.4e-09  Score=94.23  Aligned_cols=85  Identities=27%  Similarity=0.379  Sum_probs=69.1

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeecc--CCcEEEee-------eceEEEecCCCCC-CeEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVE--DRNHKIHR-------TGSLRLYNIGPQD-SGLY  390 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~--~~~~~i~~-------~~sL~I~~v~~~D-~G~Y  390 (940)
                      ||.| .....+.+.+|++++|.|.+.+.|.| .|.|.+++..+..  ..++.+..       .++|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5555 55566789999999999999999998 7899988877654  35776654       3479999998777 7999


Q ss_pred             EEEEEeCCeeEEEEEEE
Q psy11143        391 RCTASNLLGEDVAEGYL  407 (940)
Q Consensus       391 tC~A~N~~G~~~~s~~L  407 (940)
                      .|.|.|.+|+....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999999887766

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.93  E-value=4.2e-09  Score=92.17  Aligned_cols=65  Identities=29%  Similarity=0.635  Sum_probs=52.0

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeec--cCCcEEE-eeeceEEEecCCC----CCCeEEEEEEEeCCeeEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFV--EDRNHKI-HRTGSLRLYNIGP----QDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~--~~~~~~i-~~~~sL~I~~v~~----~D~G~YtC~A~N~~G~~~~s  404 (940)
                      +.|.|.+.|+|.|.|+|+|++..+.  .+.++.+ ..+++|.|..+..    +|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4799999999999999999998753  3445554 3467899988642    46999999999999977664

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.93  E-value=7.7e-09  Score=92.38  Aligned_cols=70  Identities=24%  Similarity=0.500  Sum_probs=56.9

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .|.+..+.+|+++.|.|.+.+ |.++|+|++||.+|..+.. ++......|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            577889999999999999865 6789999999999976532 233233346999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.92  E-value=8.2e-09  Score=92.21  Aligned_cols=69  Identities=22%  Similarity=0.448  Sum_probs=58.6

Q ss_pred             cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      .|.+..+..|+++.|.|.+.+ |.+.|.|+++|..+..+ .++. ..++.|.|.+++.+|+|.|+|.|.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~-~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYL-LYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEE-EECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            356778899999999999864 77899999999998766 3444 456789999999999999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.92  E-value=3.1e-09  Score=93.00  Aligned_cols=65  Identities=32%  Similarity=0.623  Sum_probs=51.5

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEccccc----CCCeEEEEEEEeCCCceEE
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRE----SDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v~~----~DsG~YtC~a~n~~g~~~~  127 (940)
                      ++|.|.+.|.|.|+|+|+|+|..+....  ..........|.|.++..    +|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            5799999999999999999999886433  333333345668888754    7899999999999998665

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.92  E-value=4.3e-09  Score=92.10  Aligned_cols=65  Identities=31%  Similarity=0.639  Sum_probs=51.5

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeecc--CCcEEEe-eeceEEEecCCC----CCCeEEEEEEEeCCeeEEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIH-RTGSLRLYNIGP----QDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~--~~~~~i~-~~~sL~I~~v~~----~D~G~YtC~A~N~~G~~~~s  404 (940)
                      +.|.|.+.|.|.|+|+|+|++..+..  ..+..+. .+++|.|..+..    .|.|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            57999999999999999999987632  2333333 367898988764    37899999999999987663

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.91  E-value=5.2e-09  Score=93.09  Aligned_cols=73  Identities=18%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             CCeEEEEEeecCc--CCCeEEEEeCCeeeccCC----cEE----EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        337 GSSVEIPCKPDGE--PLPRISWSKDEAEFVEDR----NHK----IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       337 G~~vtL~C~v~g~--P~p~i~W~k~g~~i~~~~----~~~----i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      |++++|.|.+.|.  |.|.|.|.+++..+....    +..    ....++|.|.+++.+|+|.|+|.|.|..|..++++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999999  888999998776542211    011    113458999999999999999999999999999998


Q ss_pred             EEE
Q psy11143        407 LTV  409 (940)
Q Consensus       407 L~V  409 (940)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.90  E-value=5.1e-09  Score=90.70  Aligned_cols=68  Identities=25%  Similarity=0.492  Sum_probs=55.2

Q ss_pred             EEEEEEeec-cCCCeEEEEECCEeecCCCCeE---EE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143         63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVT---YE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM  130 (940)
Q Consensus        63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~---~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~  130 (940)
                      ++|.|.+.| .|.|.+.|+|+|..+.......   +.  .....|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            469999999 9999999999999987654432   22  23356899999999999999999999998776553

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.90  E-value=3.8e-09  Score=92.42  Aligned_cols=64  Identities=30%  Similarity=0.660  Sum_probs=51.9

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccC--CcEEEe-eeceEEEecCCC----CCCeEEEEEEEeCCeeEEE
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIH-RTGSLRLYNIGP----QDSGLYRCTASNLLGEDVA  403 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~--~~~~i~-~~~sL~I~~v~~----~D~G~YtC~A~N~~G~~~~  403 (940)
                      ++|.|.+.|.|.|+|+|+|++..+...  .++.+. .+++|.|..+..    +|+|.|+|.|.|.+|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            579999999999999999999887532  344332 367899998854    7899999999999997655

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.90  E-value=6.7e-09  Score=90.91  Aligned_cols=65  Identities=35%  Similarity=0.643  Sum_probs=50.8

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEccccc----CCCeEEEEEEEeCCCceEE
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRE----SDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v~~----~DsG~YtC~a~n~~g~~~~  127 (940)
                      +.|.|.+.|.|.|+|+|+|+|.++....  ...+...+..|.|..+..    .|+|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            5799999999999999999999874332  334444445668877764    3789999999999998666

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.90  E-value=7.8e-09  Score=90.48  Aligned_cols=66  Identities=30%  Similarity=0.550  Sum_probs=50.9

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecC--CCCeEEEeeceEEEEcccc----cCCCeEEEEEEEeCCCceEEE
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVR----ESDAGVYNCVAQNSEGSAESV  128 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~--~~~~~~~~~gs~L~I~~v~----~~DsG~YtC~a~n~~g~~~~~  128 (940)
                      +.|.|.+.|+|.|.|+|+|+|..+..  ..+..+...+..|.|..+.    .+|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            47999999999999999999987643  3334443345567888764    246999999999999977663

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.89  E-value=7e-09  Score=91.28  Aligned_cols=74  Identities=27%  Similarity=0.490  Sum_probs=56.1

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCE---e--ecCCC-CeEEE-eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGN---S--LDSDD-HVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~---~--I~~~~-~~~~~-~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      |+.++|.|.+.|.|.|.|+|+|++.   .  +.... ..++. .....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7899999999999999999999742   1  11111 01111 2334679999999999999999999999988877765


Q ss_pred             E
Q psy11143        133 I  133 (940)
Q Consensus       133 V  133 (940)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.87  E-value=1.1e-08  Score=92.05  Aligned_cols=83  Identities=18%  Similarity=0.322  Sum_probs=61.8

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceE-E
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE-S  127 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~-~  127 (940)
                      +|..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+....  ..++......|.|.+++.+|+|.|+|.|.+..+... .
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            356678899999999999987 778999999998776542  123333333478999999999999999997755333 3


Q ss_pred             EEEEEEe
Q psy11143        128 VAMIRIN  134 (940)
Q Consensus       128 ~~~L~V~  134 (940)
                      +..|.|.
T Consensus        81 ~~~l~V~   87 (89)
T cd04979          81 TYSLNVL   87 (89)
T ss_pred             EEEEEEe
Confidence            5555553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.87  E-value=1.9e-08  Score=89.06  Aligned_cols=78  Identities=32%  Similarity=0.526  Sum_probs=64.1

Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe----eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL  407 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L  407 (940)
                      +.+..|+.++|.|.+.+.|.+.+.|++++..+.........    ....|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            35678999999999999999999999999887644333221    12369999999999999999999999998888877


Q ss_pred             EE
Q psy11143        408 TV  409 (940)
Q Consensus       408 ~V  409 (940)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            64

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.87  E-value=9.7e-09  Score=91.56  Aligned_cols=78  Identities=26%  Similarity=0.421  Sum_probs=63.3

Q ss_pred             eCCCcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV  128 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~  128 (940)
                      ..|....+.+|++++|.|.+.+ .|.+.|.|++++..++..    ....+..|.|.+++.+|+|.|+|.+.|..|.....
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            4456778999999999999975 688899999998775432    12234568999999999999999999999988876


Q ss_pred             EEE
Q psy11143        129 AMI  131 (940)
Q Consensus       129 ~~L  131 (940)
                      +.|
T Consensus        82 ~~l   84 (85)
T cd05754          82 ATL   84 (85)
T ss_pred             EEE
Confidence            654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.84  E-value=1.2e-08  Score=89.55  Aligned_cols=69  Identities=25%  Similarity=0.510  Sum_probs=52.1

Q ss_pred             EEEEEEEeeeCCCeEEEEECCeecC--------CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce-eEEEEE
Q psy11143        247 SRITCLVEGHPLPQMTWFHDGNSLD--------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE-SVAMIR  316 (940)
Q Consensus       247 v~L~C~v~G~P~p~ItW~k~g~~l~--------~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~-~s~~l~  316 (940)
                      ++|.|.+.|+|.|.++|++++....        ...++....++ +|.|.++..+|+|.|+|.|.|..|... .++.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~-~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG-SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC-eEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            5799999999999999999743211        23344444444 499999999999999999999999773 344443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.82  E-value=3.1e-08  Score=87.69  Aligned_cols=78  Identities=29%  Similarity=0.632  Sum_probs=62.1

Q ss_pred             EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE---eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEE
Q psy11143         55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  131 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L  131 (940)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+.........   .....|.|.++..+|+|.|+|.+.|..|..+.+..|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            45678999999999999999999999999887644322211   223458999999999999999999999987766655


Q ss_pred             E
Q psy11143        132 R  132 (940)
Q Consensus       132 ~  132 (940)
                      .
T Consensus        84 ~   84 (85)
T cd05729          84 D   84 (85)
T ss_pred             e
Confidence            4

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.82  E-value=1.9e-08  Score=89.46  Aligned_cols=74  Identities=18%  Similarity=0.299  Sum_probs=57.9

Q ss_pred             CCeEEEEEEeecc--CCCeEEEEECCEeecCCCCe---EE----EeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143         60 GSTSRITCLVEGH--PLPQMTWFHDGNSLDSDDHV---TY----EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM  130 (940)
Q Consensus        60 Gesv~L~C~v~g~--P~p~V~W~kdg~~I~~~~~~---~~----~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~  130 (940)
                      |++++|.|.+.+.  |.+.|+|++++..+......   ..    ....+.|+|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  88899999887654322110   00    123356899999999999999999999999888887


Q ss_pred             EEE
Q psy11143        131 IRI  133 (940)
Q Consensus       131 L~V  133 (940)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.78  E-value=3e-08  Score=90.48  Aligned_cols=80  Identities=20%  Similarity=0.448  Sum_probs=61.9

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCe--------eeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEe
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA--------EFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~--------~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      +.++.+.+|++++|.|.+.+.|.|.+.|++.+.        ....+.++.+..    ..+|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            456789999999999999999999999986332        222345665432    35899999999999999999998


Q ss_pred             CCeeEEEEEEEEE
Q psy11143        397 LLGEDVAEGYLTV  409 (940)
Q Consensus       397 ~~G~~~~s~~L~V  409 (940)
                      . ...+.+++|+|
T Consensus        84 ~-~~~~~~~~l~v   95 (95)
T cd07701          84 M-PVKTSKAYLTV   95 (95)
T ss_pred             e-cCccEEEEEEC
Confidence            5 44477777765

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.78  E-value=1.7e-08  Score=87.91  Aligned_cols=67  Identities=25%  Similarity=0.488  Sum_probs=53.3

Q ss_pred             EEEEEeecC-cCCCeEEEEeCCeeeccC----CcEEEe---eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        340 VEIPCKPDG-EPLPRISWSKDEAEFVED----RNHKIH---RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       340 vtL~C~v~g-~P~p~i~W~k~g~~i~~~----~~~~i~---~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      +.|.|.+.+ .|.+.+.|++++..+...    .++.+.   ..++|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999874 688899999999887532    122222   2357999999999999999999999999888764

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.77  E-value=4.4e-08  Score=89.40  Aligned_cols=82  Identities=20%  Similarity=0.334  Sum_probs=59.3

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--------EeecCCCCeEEE---eeceEEEEcccccCCCeEEEEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--------NSLDSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--------~~I~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .++++.+.+|++++|.|.+.+.|.+.|.|++.+        .......++...   .....|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            356788999999999999999999999998632        222223344332   233568999999999999999999


Q ss_pred             eCCCceEEEEEEEE
Q psy11143        120 NSEGSAESVAMIRI  133 (940)
Q Consensus       120 n~~g~~~~~~~L~V  133 (940)
                      ...+. ...+.|+|
T Consensus        83 t~~~~-~~~~~l~v   95 (95)
T cd07701          83 TMPVK-TSKAYLTV   95 (95)
T ss_pred             eecCc-cEEEEEEC
Confidence            75333 44555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.77  E-value=1.9e-08  Score=89.32  Aligned_cols=71  Identities=21%  Similarity=0.301  Sum_probs=56.4

Q ss_pred             CCCcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      ++....|.+|++++|.|.+.+ .+.+.+.|+|+|..+...      ..+..|.|.+++.+|+|.|+|.+.+..+...+
T Consensus         5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s   76 (83)
T cd05753           5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS   76 (83)
T ss_pred             ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------CCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence            344557899999999999854 566789999999876421      22356799999999999999999999885544

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.77  E-value=6.3e-08  Score=88.49  Aligned_cols=86  Identities=29%  Similarity=0.529  Sum_probs=67.3

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCC--CCeEEEe------eceEEEEcccccCC-CeEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSD--DHVTYEH------DGFVLVLNGVRESD-AGVY  114 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~--~~~~~~~------~gs~L~I~~v~~~D-sG~Y  114 (940)
                      ||.+ .....+.+.+|+++.|.|.+.+.|+| .|.|..++..|...  .++.+..      ..+.|.|.++..+| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5655 56677889999999999999887776 78999888877554  3444442      33569999998877 7999


Q ss_pred             EEEEEeCCCceEEEEEE
Q psy11143        115 NCVAQNSEGSAESVAMI  131 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L  131 (940)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998776554

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.77  E-value=3e-08  Score=89.84  Aligned_cols=77  Identities=21%  Similarity=0.272  Sum_probs=62.8

Q ss_pred             eeecCCCeEEEEEeecC-----cCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDG-----EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g-----~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      +.+.+|+++.|.|...+     +|.|.+.|+|++.++....+.. ...+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t   83 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT   83 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-ecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence            46788999999998653     3678999999999987655443 36779999999999999999999999988776665


Q ss_pred             EEE
Q psy11143        407 LTV  409 (940)
Q Consensus       407 L~V  409 (940)
                      .++
T Consensus        84 ~t~   86 (92)
T cd05757          84 RTI   86 (92)
T ss_pred             EEE
Confidence            544

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.77  E-value=4.8e-08  Score=87.02  Aligned_cols=74  Identities=20%  Similarity=0.388  Sum_probs=57.0

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCC----cEEE---eeeceEEEecCCCCCCeEEEEEEEeCCe--eEEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR----NHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLG--EDVAEGYL  407 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~----~~~i---~~~~sL~I~~v~~~D~G~YtC~A~N~~G--~~~~s~~L  407 (940)
                      |++++|.|.+.+.|.+.+.|++.+.......    +..+   ....+|.|.+++.+|+|.|+|.|+|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999998775322111    1111   1245899999999999999999999887  66777777


Q ss_pred             EEe
Q psy11143        408 TVT  410 (940)
Q Consensus       408 ~V~  410 (940)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.75  E-value=4.9e-08  Score=87.82  Aligned_cols=80  Identities=20%  Similarity=0.369  Sum_probs=62.3

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC----CcEEEeeeceEEEecCCCCCCeEEEEEEEeCC-eeEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED----RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL-GEDVA  403 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~----~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~-G~~~~  403 (940)
                      |..+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+...    .++.. ..+.|.|.+++.+|+|.|+|.|.|.. +....
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            44567889999999999987 88899999999876544    23333 34579999999999999999999754 45555


Q ss_pred             EEEEEEe
Q psy11143        404 EGYLTVT  410 (940)
Q Consensus       404 s~~L~V~  410 (940)
                      +..|.|.
T Consensus        81 ~~~l~V~   87 (89)
T cd04979          81 TYSLNVL   87 (89)
T ss_pred             EEEEEEe
Confidence            6677765

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.75  E-value=4.6e-08  Score=88.61  Aligned_cols=78  Identities=23%  Similarity=0.441  Sum_probs=61.8

Q ss_pred             cEEEecCCeEEEEEEeec-----cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143         54 STTYSTGSTSRITCLVEG-----HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV  128 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g-----~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~  128 (940)
                      .+.+.+|+.+.|.|...+     +|.|.|.|||++.++..... .+. .+..|.|.++..+|+|.|+|.+.|..+.....
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~~-~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~   81 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RFV-KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN   81 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EEe-cCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence            456889999999998743     35779999999999875443 332 55678999999999999999999998887765


Q ss_pred             EEEEE
Q psy11143        129 AMIRI  133 (940)
Q Consensus       129 ~~L~V  133 (940)
                      ++.++
T Consensus        82 ~t~t~   86 (92)
T cd05757          82 VTRTI   86 (92)
T ss_pred             EEEEE
Confidence            54444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.74  E-value=6.7e-08  Score=88.13  Aligned_cols=79  Identities=19%  Similarity=0.362  Sum_probs=60.2

Q ss_pred             CceeecCCCeEEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEee----eceEEEecCCCCCCeEEEEEEEeC
Q psy11143        330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .++.+.+|+++.|.|.+.+.|.|.|.|+|++..+        ..+.++.+..    ..+|.|.++..+|+|.|+|.+.. 
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-
Confidence            4678899999999999999999999999877543        1234444321    35899999999999999999988 


Q ss_pred             CeeEEEEEEEEE
Q psy11143        398 LGEDVAEGYLTV  409 (940)
Q Consensus       398 ~G~~~~s~~L~V  409 (940)
                      .-..++.+.|+|
T Consensus        84 ~~~~~~~~~~~v   95 (95)
T cd05882          84 MPVRTAKATVTV   95 (95)
T ss_pred             eccccEEEEEEC
Confidence            334455555543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.73  E-value=9.9e-08  Score=87.01  Aligned_cols=80  Identities=19%  Similarity=0.354  Sum_probs=58.3

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEee--------cCCCCeEEE---eeceEEEEcccccCCCeEEEEEEEe
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--------DSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I--------~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      ..++++.+|+++.|.|.+.+.|.+.|.|++++..+        ....++.+.   .....|.|.+++.+|+|.|+|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            45788999999999999999999999999877532        112233322   1235689999999999999999987


Q ss_pred             CCCceEEEEEEE
Q psy11143        121 SEGSAESVAMIR  132 (940)
Q Consensus       121 ~~g~~~~~~~L~  132 (940)
                      . -..+..++|+
T Consensus        84 ~-~~~~~~~~~~   94 (95)
T cd05882          84 M-PVRTAKATVT   94 (95)
T ss_pred             e-ccccEEEEEE
Confidence            2 2333344443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.73  E-value=7.9e-08  Score=85.63  Aligned_cols=74  Identities=23%  Similarity=0.425  Sum_probs=53.9

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCEeecCCC----CeEEE--eeceEEEEcccccCCCeEEEEEEEeCCC--ceEEEEEE
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEG--SAESVAMI  131 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~----~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g--~~~~~~~L  131 (940)
                      |++++|+|.+.+.|.+.+.|++.++......    ...+.  .....|.|.+++.+|+|.|+|.|.|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999998776432111    11111  2245689999999999999999999876  33345555


Q ss_pred             EE
Q psy11143        132 RI  133 (940)
Q Consensus       132 ~V  133 (940)
                      +|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            54

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.72  E-value=4.1e-08  Score=85.52  Aligned_cols=68  Identities=18%  Similarity=0.404  Sum_probs=52.3

Q ss_pred             EEEEEEeec-cCCCeEEEEECCEeecCCC--Ce--EEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143         63 SRITCLVEG-HPLPQMTWFHDGNSLDSDD--HV--TYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM  130 (940)
Q Consensus        63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~--~~--~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~  130 (940)
                      +.|+|.+.+ .|.+.+.|+|+|..+....  ..  .+.  .....|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999875 6888999999999886432  12  222  23356899999999999999999999998776543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.70  E-value=6.7e-08  Score=79.30  Aligned_cols=63  Identities=38%  Similarity=0.795  Sum_probs=52.6

Q ss_pred             cCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        59 eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +|++++|.|.+.+.|.+.+.|++++..+.  ...........|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            58999999999888999999999998887  2333344556789999999999999999988754

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.69  E-value=7.4e-08  Score=79.04  Aligned_cols=63  Identities=33%  Similarity=0.690  Sum_probs=53.1

Q ss_pred             CCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       336 ~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      +|++++|.|.+.+.|.+.+.|++++..+. ...........|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            48899999999999999999999998776 3333334456899999999999999999999865

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.68  E-value=4.7e-08  Score=88.74  Aligned_cols=73  Identities=16%  Similarity=0.208  Sum_probs=56.9

Q ss_pred             CcEEEecCCeEEEEEEe-eccCCCeEEEEECCEee--cCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         53 VSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I--~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      ..+.+.+|+.+.|.|.. .|.|.+.|.|++++..+  ..+.+..+......|.|.+|+.+|+|.|+|.|+|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            45678999999999986 67899999999998764  223333344434456999999999999999999976543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.68  E-value=1.7e-07  Score=81.64  Aligned_cols=78  Identities=33%  Similarity=0.610  Sum_probs=60.4

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe-eE
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG-ED  401 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G-~~  401 (940)
                      |.+...+  ..+.+|++++|.|.+.+.|.+.+.|++++..+....       ..+.+..+..+|.|.|+|.|.|..| ..
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~~~~~~~~~~~~g~y~C~~~~~~~~~~   72 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NGLFIPNVSPEDSGNYTCRASNGSGSNT   72 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SEEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------eeeeeeeeccccCEEEEEEEEeCCCCeE
Confidence            5555544  568899999999999999999999999987775222       1277888999999999999999665 45


Q ss_pred             EEEEEEEE
Q psy11143        402 VAEGYLTV  409 (940)
Q Consensus       402 ~~s~~L~V  409 (940)
                      +.++.|+|
T Consensus        73 s~~~~v~V   80 (80)
T PF13895_consen   73 STSVNVTV   80 (80)
T ss_dssp             EEEEEEEE
T ss_pred             eeeEEeeC
Confidence            55666654

...

>TIGR00864 PCC polycystin cation channel protein

Probab=98.67  E-value=0.00035  Score=93.30  Aligned_cols=361  Identities=14%  Similarity=0.088  Sum_probs=215.5

Q ss_pred             CCCCCeEEEEEE--EcCCceEEEEEEEEEeCCC-eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe
Q psy11143         16 QREHGGRYSCVA--GNPAGVYRGDLHVTVNAPP-IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV   92 (940)
Q Consensus        16 ~~sDsG~Y~C~a--~n~~g~~~~~v~l~V~~pP-~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~   92 (940)
                      ...+.|.|...+  .|..|....+..+.|..|- .+.+......+..|++|.|.-...+.....+.|..++..-......
T Consensus      1665 t~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p 1744 (2740)
T TIGR00864      1665 NPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEP 1744 (2740)
T ss_pred             ecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCC
Confidence            446789888865  4888877666666665432 3334444555678999999987777777899998765321110111


Q ss_pred             EEEeeceEEEEcccccCCCeEEEE--EEEeCCCceEEEEEEEEecccCCeeEecCCc----eeecCCCcEEEEEEeCCCC
Q psy11143         93 TYEHDGFVLVLNGVRESDAGVYNC--VAQNSEGSAESVAMIRINGHRAPRLVVKPFD----MRAPAGSSVEIPCKPDGEP  166 (940)
Q Consensus        93 ~~~~~gs~L~I~~v~~~DsG~YtC--~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~----~~v~~Ge~vtL~C~v~g~P  166 (940)
                      .+          .-+-...|.|..  .|.|..|+...+..+.|...-. -+.+....    ..+..|.++.|.=.+....
T Consensus      1745 ~~----------tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~-GL~i~~~~~~~~~~~~ag~~v~F~a~vstGs 1813 (2740)
T TIGR00864      1745 FM----------SHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPIS-GLKIRAADAGEQNFFAADSSVCFQGELATGT 1813 (2740)
T ss_pred             ce----------EEEccCCceEEEEEEEEccccccceeEEEEEEeccc-cceEecCCCCcccceecCcEEEEEEEccCCC
Confidence            00          122445788855  5578888777766666654322 12222111    1455688888877755434


Q ss_pred             CCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEE--EEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecC
Q psy11143        167 LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC--TASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTG  244 (940)
Q Consensus       167 ~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC--~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G  244 (940)
                      ...+.|..++..-...+        ..   ..+..+.|.|+.  .|.|..+....+..+.|+.....+........+..|
T Consensus      1814 nVsw~W~f~~g~s~~gk--------~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n 1882 (2740)
T TIGR00864      1814 NVSWCWAIDGGSSKMGK--------HA---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIG 1882 (2740)
T ss_pred             eeEEEEEeCCCCccccc--------ee---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCC
Confidence            44788877654311111        11   135678898866  467888888888888888555555566666677889


Q ss_pred             CeEEEEEEEeeeCCCeEEEEECCee-cCCCCceEEeecCeEEEEeeeccCCCeEE--EEEEEeCCCCceeEEEEEEeecc
Q psy11143        245 STSRITCLVEGHPLPQMTWFHDGNS-LDSDDHVTYEHDGFVLVLNGVRESDAGVY--NCVAQNSEGSAESVAMIRINGHR  321 (940)
Q Consensus       245 ~~v~L~C~v~G~P~p~ItW~k~g~~-l~~~~~~~~~~~g~sL~I~~v~~~DsG~Y--tC~A~N~~Gs~~~s~~l~V~~~~  321 (940)
                      +.++|.+.+...+...+.|...+.. ....       .+. .....-  ...|.|  +-.|.|..+.......+.|....
T Consensus      1883 ~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t-------~~~-t~~HsY--~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V 1952 (2740)
T TIGR00864      1883 EKVEFQILLAAGSAVNFRLQIGGAAPEVLQ-------PGP-RFSHSF--PRVDDHMVNLRAKNEVSCAQANLHIEVLEAV 1952 (2740)
T ss_pred             CEEEEEEEecCCCceEEEEEeCCCCceeec-------CCC-eEEeec--CCCCcEEEEEEEEeccceeeeeEEEEEEEec
Confidence            9999999988777788889876432 2110       111 111112  234555  45678988887777666664321


Q ss_pred             CCeEEEcCCce-eecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEE--EEEEeCC
Q psy11143        322 APRLVVKPFDM-RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR--CTASNLL  398 (940)
Q Consensus       322 ~P~i~~~p~~~-~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~Yt--C~A~N~~  398 (940)
                       .-+.+..... .+..|+..++.-.+...-+..+.|+..-..+..+..+. ....+.+..   ....|.|+  ..|.|..
T Consensus      1953 -~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~-~~G~~vty~---~~~~G~~~I~v~A~N~l 2027 (2740)
T TIGR00864      1953 -RGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVI-HMGKDVSYT---AEAAGLLEIQLGAFNAL 2027 (2740)
T ss_pred             -cceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCccee-ecCCceEEc---cCCCcEEEEEEEEEccc
Confidence             2222222111 26789999999887654445899986533222222211 111111111   13578875  5789999


Q ss_pred             eeEEEEEEEEEecCC
Q psy11143        399 GEDVAEGYLTVTGEN  413 (940)
Q Consensus       399 G~~~~s~~L~V~~~~  413 (940)
                      |.......+.|+.+-
T Consensus      2028 ~s~n~t~~i~VQ~~i 2042 (2740)
T TIGR00864      2028 GAENITLQLEAQDAL 2042 (2740)
T ss_pred             CcccccEEEEEEehe
Confidence            988777777777653

Note: this model has been restricted to the amino half because for technical reasons.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.67  E-value=1.4e-07  Score=82.12  Aligned_cols=69  Identities=33%  Similarity=0.756  Sum_probs=54.9

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      |.+..++  ..+.+|+.++|.|.+.+.|.+.+.|++++..+....       +. +.|.++..+|+|.|+|.+.+..+.
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~-~~~~~~~~~~~g~y~C~~~~~~~~   70 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NG-LFIPNVSPEDSGNYTCRASNGSGS   70 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SE-EEESSEEGGGTEEEEEEEEETTEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------ee-eeeeeeccccCEEEEEEEEeCCCC
Confidence            4444444  568999999999999999889999999998876221       11 578999999999999999996653

...

>smart00409 IG Immunoglobulin

Probab=98.64  E-value=4.9e-07  Score=78.74  Aligned_cols=82  Identities=33%  Similarity=0.676  Sum_probs=65.8

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEEC-CEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHD-GNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESV  128 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd-g~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~  128 (940)
                      |..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+............  ..|.|.+++.+|+|.|+|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            3456788999999999999888889999998 8887655555555443  568999999999999999999887776666


Q ss_pred             EEEEE
Q psy11143        129 AMIRI  133 (940)
Q Consensus       129 ~~L~V  133 (940)
                      ..|.|
T Consensus        81 ~~l~V   85 (86)
T smart00409       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            55554

>smart00410 IG_like Immunoglobulin like

Probab=98.64  E-value=4.9e-07  Score=78.74  Aligned_cols=82  Identities=33%  Similarity=0.676  Sum_probs=65.8

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEEC-CEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHD-GNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESV  128 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd-g~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~  128 (940)
                      |..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+............  ..|.|.+++.+|+|.|+|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            3456788999999999999888889999998 8887655555555443  568999999999999999999887776666


Q ss_pred             EEEEE
Q psy11143        129 AMIRI  133 (940)
Q Consensus       129 ~~L~V  133 (940)
                      ..|.|
T Consensus        81 ~~l~V   85 (86)
T smart00410       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            55554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>TIGR00864 PCC polycystin cation channel protein

Probab=98.64  E-value=0.00015  Score=96.55  Aligned_cols=358  Identities=16%  Similarity=0.102  Sum_probs=215.2

Q ss_pred             CCCeEEEEEE--EcCCceEEEEEEEEEeCCC---eEEeC-----------CCcEEEecCCeEEEEEEeeccCCCeEEEEE
Q psy11143         18 EHGGRYSCVA--GNPAGVYRGDLHVTVNAPP---IFIQR-----------PVSTTYSTGSTSRITCLVEGHPLPQMTWFH   81 (940)
Q Consensus        18 sDsG~Y~C~a--~n~~g~~~~~v~l~V~~pP---~~~~~-----------p~~~~V~eGesv~L~C~v~g~P~p~V~W~k   81 (940)
                      ...|.|+...  .|..|....+..+.|..+.   .+...           +....+..|..+.|.-.+......++.|..
T Consensus      1565 ~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~ 1644 (2740)
T TIGR00864      1565 RSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNA 1644 (2740)
T ss_pred             cCCceEEEEEEEecCCCccceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEE
Confidence            3578898855  4888887777777776543   22221           112345667778887666544555888855


Q ss_pred             CCEeecCCCCeEEEeeceEEEEcccccCCCeEEE--EEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEE
Q psy11143         82 DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP  159 (940)
Q Consensus        82 dg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~Yt--C~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~  159 (940)
                      .+..-+  ....+...|.   ...+...+.|.|.  -.|.|..|....+..+.|.. +...+.+......+..|+.|.|.
T Consensus      1645 ~~~n~~--dg~~~~~tGk---~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~e-pi~~L~L~aS~~~aavn~~V~fs 1718 (2740)
T TIGR00864      1645 ILDNEP--DGPAFAGSGK---GAKLNPLEAGPCDIFLQAANLLGQATADCTIDFLE-PAGNLMLQASDNPAAVNALINLS 1718 (2740)
T ss_pred             ecCCCC--CCccccccCc---eeEEecCCCceEEEEEEEeecccceeeEEEEEEEE-EcCceEEeccCCcccCCCeEEEE
Confidence            111000  0000112221   2224457789885  46678889888877777765 34455566666677889999998


Q ss_pred             EEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEE--EEEcCCcceeeeeeeeecCCCCeeeeCCC
Q psy11143        160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC--TASNLLGEDVAEGYLTVTGAPPIFIQRPV  237 (940)
Q Consensus       160 C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC--~a~N~~g~~s~s~~L~V~~~~p~~~~~p~  237 (940)
                      -...+.....++|..++..-.....-...         -+....|.|..  .|.|..|....+..+.|.....-+.+...
T Consensus      1719 ~~lt~GS~vty~W~~gdG~s~~~s~p~~t---------Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~ 1789 (2740)
T TIGR00864      1719 AELAEGSGLQYRWFLEEGDDLETSEPFMS---------HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAA 1789 (2740)
T ss_pred             EEecCCCCcEEEEEECCCCCcccCCCceE---------EEccCCceEEEEEEEEccccccceeEEEEEEeccccceEecC
Confidence            87777778899999855422111111010         12345687755  45688887777777777643322222211


Q ss_pred             e----eEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEE--EEEeCCCCcee
Q psy11143        238 S----TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC--VAQNSEGSAES  311 (940)
Q Consensus       238 ~----~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC--~A~N~~Gs~~~  311 (940)
                      .    ..+..|..+.|.-.+.......+.|..++..-.....         .   .....+.|.|+.  .|.|..+....
T Consensus      1790 ~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~---------v---~~Tf~~aG~ytV~L~AsN~vs~~~~ 1857 (2740)
T TIGR00864      1790 DAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH---------A---CMTFPDAGTFAIRLNASNAVSGKSA 1857 (2740)
T ss_pred             CCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce---------e---EEecCCCeEEEEEEEEEcccCccee
Confidence            1    1455677787776643333347888877543111111         1   134567898875  57799988888


Q ss_pred             EEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCee-eccCCcEEEeeeceEEEecCCCCCCeEE
Q psy11143        312 VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLY  390 (940)
Q Consensus       312 s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~-i~~~~~~~i~~~~sL~I~~v~~~D~G~Y  390 (940)
                      +..+.|+. ..-.+........+..|+.++|++.....+...+.|...+.. ...       ..+....+...  ..|.|
T Consensus      1858 s~~~~VQe-~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~-------t~~~t~~HsY~--~~G~Y 1927 (2740)
T TIGR00864      1858 SREFFAEE-PIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL-------QPGPRFSHSFP--RVDDH 1927 (2740)
T ss_pred             eeeEEEEE-ecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee-------cCCCeEEeecC--CCCcE
Confidence            88888864 222344445555778999999999988777889999876532 111       01111112222  34555


Q ss_pred             --EEEEEeCCeeEEEEEEEEEecC
Q psy11143        391 --RCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       391 --tC~A~N~~G~~~~s~~L~V~~~  412 (940)
                        +..|.|..+...+...+.|.++
T Consensus      1928 ~VtV~A~N~Vs~~~a~~~V~Vle~ 1951 (2740)
T TIGR00864      1928 MVNLRAKNEVSCAQANLHIEVLEA 1951 (2740)
T ss_pred             EEEEEEEeccceeeeeEEEEEEEe
Confidence              5688999999888888888665

Note: this model has been restricted to the amino half because for technical reasons.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.63  E-value=1.1e-07  Score=84.58  Aligned_cols=67  Identities=16%  Similarity=0.237  Sum_probs=54.6

Q ss_pred             ceeecCCCeEEEEEeecC-cCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        331 DMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      ...+.+|++|+|.|.+.+ .|.+.+.|+|++..+...     ...+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-----CCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            346889999999999864 566799999999766421     1345899999999999999999999998544

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.62  E-value=8e-08  Score=87.05  Aligned_cols=71  Identities=27%  Similarity=0.407  Sum_probs=61.6

Q ss_pred             CceeecCCCeEEEEEe-ecCcCCCeEEEEeCCee-eccCCcEEEeeeceEEEecCCCCCCe-EEEEEEEeCCee
Q psy11143        330 FDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSG-LYRCTASNLLGE  400 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~-v~g~P~p~i~W~k~g~~-i~~~~~~~i~~~~sL~I~~v~~~D~G-~YtC~A~N~~G~  400 (940)
                      ..+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.++.+..+|.|.|.++..+|+| .|.|.|+|....
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            4578899999999997 79999999999987754 44567888888899999999999999 799999997643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>smart00410 IG_like Immunoglobulin like

Probab=98.60  E-value=5.8e-07  Score=78.24  Aligned_cols=79  Identities=32%  Similarity=0.635  Sum_probs=66.5

Q ss_pred             ceeecCCCeEEEEEeecCcCCCeEEEEeC-CeeeccCCcEEEeee---ceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~-g~~i~~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++.....   .+|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45678999999999999988889999998 777764555555444   58999999999999999999999998888877


Q ss_pred             EEE
Q psy11143        407 LTV  409 (940)
Q Consensus       407 L~V  409 (940)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            766

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.60  E-value=5.8e-07  Score=78.24  Aligned_cols=79  Identities=32%  Similarity=0.635  Sum_probs=66.5

Q ss_pred             ceeecCCCeEEEEEeecCcCCCeEEEEeC-CeeeccCCcEEEeee---ceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~-g~~i~~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++.....   .+|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45678999999999999988889999998 777764555555444   58999999999999999999999998888877


Q ss_pred             EEE
Q psy11143        407 LTV  409 (940)
Q Consensus       407 L~V  409 (940)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            766

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.60  E-value=1e-07  Score=86.60  Aligned_cols=71  Identities=23%  Similarity=0.379  Sum_probs=57.4

Q ss_pred             ceeecCCCeEEEEEe-ecCcCCCeEEEEeCCeee--ccCCcEEEe-eeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        331 DMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEF--VEDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~-v~g~P~p~i~W~k~g~~i--~~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      ...+.+|+.+.|.|. ..|.|.|.|.|++++..+  ..+.+..+. .+|.|.|.+++.+|+|.|+|.|+|..+..
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            356889999999996 568899999999998753  233444444 47999999999999999999999976543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.59  E-value=3.6e-07  Score=82.71  Aligned_cols=78  Identities=21%  Similarity=0.358  Sum_probs=60.6

Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeCC--ee----eccCCcEEEeeeceEEEecCCCCCCeEEEEEEE-eCCeeEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKDE--AE----FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS-NLLGEDVAE  404 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g--~~----i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~-N~~G~~~~s  404 (940)
                      +.+.+|++++|.|.. +.|.|.+.|++.+  ..    +....++.. ..++|.|.++..+|+|.|+|.|. |..|.....
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~   83 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK   83 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence            457789999999997 4899999999843  11    112334443 45679999999999999999998 688888888


Q ss_pred             EEEEEec
Q psy11143        405 GYLTVTG  411 (940)
Q Consensus       405 ~~L~V~~  411 (940)
                      +.|+|..
T Consensus        84 ~~l~v~~   90 (91)
T cd05871          84 YTLHVIE   90 (91)
T ss_pred             EEEEEec
Confidence            8888864

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.59  E-value=2.2e-07  Score=83.12  Aligned_cols=75  Identities=19%  Similarity=0.231  Sum_probs=57.7

Q ss_pred             CCeEEEEEeecCcCCC--eEEEEeCCeeecc---CC--cEE----EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLP--RISWSKDEAEFVE---DR--NHK----IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p--~i~W~k~g~~i~~---~~--~~~----i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                      |++++|.|.+.+.|.+  .+.|..++.....   ..  +..    ....++|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            7899999999876654  8899887753311   01  111    11346899999999999999999999999999999


Q ss_pred             EEEEec
Q psy11143        406 YLTVTG  411 (940)
Q Consensus       406 ~L~V~~  411 (940)
                      .|.|.+
T Consensus        81 ~~~V~~   86 (86)
T cd05862          81 IVIVHE   86 (86)
T ss_pred             EEEEeC
Confidence            998863

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.55  E-value=2.2e-07  Score=84.47  Aligned_cols=71  Identities=15%  Similarity=0.360  Sum_probs=52.6

Q ss_pred             EEEecCCeEEEEEEeeccCCCeEEEEECCEee-cC-------------CCC--eEE---EeeceEEEEcccccCCCeEEE
Q psy11143         55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL-DS-------------DDH--VTY---EHDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I-~~-------------~~~--~~~---~~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      +.+.+|++|+|.|.+++.+.+.|.|+++++.. ..             ..+  .+.   ......|+|.+++.+|+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            46789999999999999899999999876332 11             011  111   112245899999999999999


Q ss_pred             EEEEeCCCce
Q psy11143        116 CVAQNSEGSA  125 (940)
Q Consensus       116 C~a~n~~g~~  125 (940)
                      |.+.|..++.
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999877654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.53  E-value=5.4e-07  Score=81.50  Aligned_cols=80  Identities=20%  Similarity=0.328  Sum_probs=55.5

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCE--eecC--CCCeEEEeeceEEEEcccccCCCeEEEEEEEe-CCCceEEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN-SEGSAESV  128 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~--~I~~--~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n-~~g~~~~~  128 (940)
                      .+.+.+|+++.|.|.. +.|.+.|.|||.+.  ....  ....++......|.|.+++.+|+|.|+|.+.+ ..+.....
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~   83 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK   83 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence            4567899999999996 47888999998432  2111  11223333444579999999999999999985 54544446


Q ss_pred             EEEEEe
Q psy11143        129 AMIRIN  134 (940)
Q Consensus       129 ~~L~V~  134 (940)
                      +.|+|.
T Consensus        84 ~~l~v~   89 (91)
T cd05871          84 YTLHVI   89 (91)
T ss_pred             EEEEEe
Confidence            666654

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.53  E-value=5e-07  Score=82.33  Aligned_cols=79  Identities=19%  Similarity=0.397  Sum_probs=59.4

Q ss_pred             CceeecCCCeEEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEe----eeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .++.+.+|++++|.|.+.+.|.+.+.|++.+..+        ..+.++.+.    ...+|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            4567899999999999999999999998633211        123455542    2347999999999999999999987


Q ss_pred             CeeEEEEEEEEE
Q psy11143        398 LGEDVAEGYLTV  409 (940)
Q Consensus       398 ~G~~~~s~~L~V  409 (940)
                      . ..++++.|+|
T Consensus        85 ~-~~~~~~~~~v   95 (95)
T cd05717          85 P-VQTAKATVTV   95 (95)
T ss_pred             C-CceEEEEEEC
Confidence            5 3466666654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.51  E-value=2.4e-07  Score=84.01  Aligned_cols=72  Identities=18%  Similarity=0.306  Sum_probs=57.5

Q ss_pred             CCcEEEecCCeEEEEEE-eeccCCCeEEEEECCEe-ecCCCCeEEEeeceEEEEcccccCCCe-EEEEEEEeCCCc
Q psy11143         52 PVSTTYSTGSTSRITCL-VEGHPLPQMTWFHDGNS-LDSDDHVTYEHDGFVLVLNGVRESDAG-VYNCVAQNSEGS  124 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~-v~g~P~p~V~W~kdg~~-I~~~~~~~~~~~gs~L~I~~v~~~DsG-~YtC~a~n~~g~  124 (940)
                      .+.+.|.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.++....+| .|.|.+|+.+|+| .|.|.|.|....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G-nL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG-NLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc-eEEEEEEehhhCCCCeEEEEEccccc
Confidence            46788999999999998 58999999999987654 3334444444454 5699999999999 899999987644

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.50  E-value=1.9e-07  Score=78.15  Aligned_cols=59  Identities=32%  Similarity=0.655  Sum_probs=46.4

Q ss_pred             CCeEEEEEEe-eccCCCeEEEEECCEeecCCCCeEEEeece----EEEEcccccCCCeEEEEEE
Q psy11143         60 GSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        60 Gesv~L~C~v-~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs----~L~I~~v~~~DsG~YtC~a  118 (940)
                      |++++|.|.+ .+.+...|.|++++..+...........+.    .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 777888999999988765443333332222    2899999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.49  E-value=8.5e-07  Score=80.80  Aligned_cols=81  Identities=17%  Similarity=0.338  Sum_probs=56.7

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEee--------cCCCCeEEE---eeceEEEEcccccCCCeEEEEEEEe
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--------DSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I--------~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      ++.+.+.+|++++|.|.+.+.+.+.+.|++.+..+        ....++...   .....|.|.+++.+|+|.|+|.+..
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            35678999999999999988888899998632211        112233331   1234689999999999999999987


Q ss_pred             CCCceEEEEEEEE
Q psy11143        121 SEGSAESVAMIRI  133 (940)
Q Consensus       121 ~~g~~~~~~~L~V  133 (940)
                      ... .+..+.|+|
T Consensus        84 ~~~-~~~~~~~~v   95 (95)
T cd05717          84 MPV-QTAKATVTV   95 (95)
T ss_pred             CCC-ceEEEEEEC
Confidence            643 344554543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.43  E-value=1e-06  Score=80.51  Aligned_cols=80  Identities=16%  Similarity=0.306  Sum_probs=60.0

Q ss_pred             cEEEecCCeEEEEEEe------ec-----cCCCeEEEEECCEeecCCC-----CeEEEeeceEEEEcccccCCCeEEEEE
Q psy11143         54 STTYSTGSTSRITCLV------EG-----HPLPQMTWFHDGNSLDSDD-----HVTYEHDGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v------~g-----~P~p~V~W~kdg~~I~~~~-----~~~~~~~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      ...+.+|+++.|.|..      .+     .+...+.|||++..+....     ..|+...+..|.|.++..+|+|.|+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            3567899999999996      11     1234899999975544322     246677788889999999999999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy11143        118 AQNSEGSAESVAMIRI  133 (940)
Q Consensus       118 a~n~~g~~~~~~~L~V  133 (940)
                      +.|.....+.+..|+|
T Consensus        89 ~rN~t~C~~~~i~l~V  104 (104)
T cd05896          89 LRNSTYCMKVSMSLTV  104 (104)
T ss_pred             ECCCCcceEEEEEEEC
Confidence            9998876666655543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.42  E-value=1.5e-06  Score=79.13  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             ceeecCCCeEEEEEeecCcCCCe-EEEEeCCeeeccCCc--EEEe------eeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRN--HKIH------RTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p~-i~W~k~g~~i~~~~~--~~i~------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      .+.+.+|+++.|.|.++++|.|+ +.|.+++..+.....  ....      ..+.|.+..+..+|.|.|+|.|.|..++.
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            46789999999999999999997 999998775533222  1111      23579999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy11143        402 VAEGYLTVT  410 (940)
Q Consensus       402 ~~s~~L~V~  410 (940)
                      +.++.|.|+
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            999999876

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.41  E-value=1.1e-06  Score=78.63  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=54.7

Q ss_pred             CCeEEEEEEeeccC--CCeEEEEECCEeecCC---CCeEE-----EeeceEEEEcccccCCCeEEEEEEEeCCCceEEEE
Q psy11143         60 GSTSRITCLVEGHP--LPQMTWFHDGNSLDSD---DHVTY-----EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA  129 (940)
Q Consensus        60 Gesv~L~C~v~g~P--~p~V~W~kdg~~I~~~---~~~~~-----~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~  129 (940)
                      |+++.|.|.+.+.+  ...+.|.+.++.....   ...+.     ....+.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78999999998755  4478998877643211   11011     11235689999999999999999999888777777


Q ss_pred             EEEEe
Q psy11143        130 MIRIN  134 (940)
Q Consensus       130 ~L~V~  134 (940)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77764

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.40  E-value=6.3e-07  Score=76.77  Aligned_cols=74  Identities=31%  Similarity=0.632  Sum_probs=52.8

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcC-CCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      +|.|...+.......+. ++|.|.+.+.| .+.|+|+.................++|.|.++..+|.|.|+|.|+|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            46677766655444444 99999999998 7799999111111122233334566899999999999999999998

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.37  E-value=1.4e-06  Score=79.10  Aligned_cols=74  Identities=19%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             cEEEecCCeEEEEEEe-e----ccCCCeEEEEECCEeecCCCC-eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         54 STTYSTGSTSRITCLV-E----GHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v-~----g~P~p~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      .+.+.+|....|.|.- .    ..+.++|+||||+.++..... .....++..|.|.++..+|+|.|+|.+.+..+...-
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y   83 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY   83 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence            3457789999999973 2    346679999999999874432 222134456899999999999999999998776544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.36  E-value=1.5e-06  Score=79.06  Aligned_cols=71  Identities=17%  Similarity=0.263  Sum_probs=54.9

Q ss_pred             eeecCCCeEEEEEee-c----CcCCCeEEEEeCCeeeccCC-cEEE-eeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        332 MRAPAGSSVEIPCKP-D----GEPLPRISWSKDEAEFVEDR-NHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v-~----g~P~p~i~W~k~g~~i~~~~-~~~i-~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      +.+.+|.+..|.|.- .    ..+.|.++|+|++.++..+. ++.. ...+.|.|.++..+|+|.|+|.|.|.+|...
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            456788999999972 2    34667999999999886543 3333 2345799999999999999999999876543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.35  E-value=8.8e-07  Score=74.07  Aligned_cols=59  Identities=32%  Similarity=0.661  Sum_probs=48.0

Q ss_pred             CCeEEEEEEE-eeeCCCeEEEEECCeecCCCCceEEeecCeE----EEEeeeccCCCeEEEEEE
Q psy11143        244 GSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV----LVLNGVRESDAGVYNCVA  302 (940)
Q Consensus       244 G~~v~L~C~v-~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~s----L~I~~v~~~DsG~YtC~A  302 (940)
                      |++++|.|.+ .+.+.+.+.|++++..+...........+..    |.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 6778889999999987765544444433332    999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.34  E-value=4.6e-06  Score=76.01  Aligned_cols=82  Identities=20%  Similarity=0.329  Sum_probs=65.9

Q ss_pred             CeeEEecCCeEEEEEEEeeeCCCe-EEEEECCeecCCCCc--eEEeec-----CeEEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        237 VSTTYSTGSTSRITCLVEGHPLPQ-MTWFHDGNSLDSDDH--VTYEHD-----GFVLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k~g~~l~~~~~--~~~~~~-----g~sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      ....+.+|+.+.|.|.++++|+|+ +.|.+++..+.....  ......     .+.|.+..++.+++|.|+|.|.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            456789999999999999999997 999999887643332  211111     135999999999999999999999999


Q ss_pred             ceeEEEEEEe
Q psy11143        309 AESVAMIRIN  318 (940)
Q Consensus       309 ~~~s~~l~V~  318 (940)
                      .+.++.|.|+
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            9888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.34  E-value=1.5e-06  Score=79.06  Aligned_cols=70  Identities=19%  Similarity=0.345  Sum_probs=52.6

Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeCCeee-cc-------------CCcEEEee------eceEEEecCCCCCCeEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VE-------------DRNHKIHR------TGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i-~~-------------~~~~~i~~------~~sL~I~~v~~~D~G~Yt  391 (940)
                      +.+.+|++|+|.|.+.+.|.+.|.|++++... ..             ..++....      ..+|+|.+++.+|+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            35678999999999999999999999766322 11             11222111      236999999999999999


Q ss_pred             EEEEeCCeeE
Q psy11143        392 CTASNLLGED  401 (940)
Q Consensus       392 C~A~N~~G~~  401 (940)
                      |.|.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999987754

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.31  E-value=3e-06  Score=74.34  Aligned_cols=65  Identities=17%  Similarity=0.327  Sum_probs=49.1

Q ss_pred             eEEEEEEee-ccCCCeEEEEECCEeecCCCCeE----EEeeceEEEEcccccCCCeEEEEEEEeCCCceE
Q psy11143         62 TSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVT----YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  126 (940)
Q Consensus        62 sv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~----~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~  126 (940)
                      .+.|+|.+. |+|++.|+|||++++|.......    .....+.|.|.....+|.+.|+|+|.|..+...
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~   70 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ   70 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence            378999985 58999999999999996532111    011223579999999999999999999877643

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.30  E-value=3.8e-06  Score=77.98  Aligned_cols=81  Identities=21%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCe-----ee--------------ccCCcEEEeeeceEEEecCCCCCCeE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA-----EF--------------VEDRNHKIHRTGSLRLYNIGPQDSGL  389 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~-----~i--------------~~~~~~~i~~~~sL~I~~v~~~D~G~  389 (940)
                      +.+..+.+|++|.|.|.....+...++|+|...     .|              ....|..+..+++|.|.+++.+|+|.
T Consensus         5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~   84 (105)
T cd05774           5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGF   84 (105)
T ss_pred             ccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEE
Confidence            444578899999999975433334999999631     11              02356667778999999999999999


Q ss_pred             EEEEEEeCC-eeEEEEEEEEE
Q psy11143        390 YRCTASNLL-GEDVAEGYLTV  409 (940)
Q Consensus       390 YtC~A~N~~-G~~~~s~~L~V  409 (940)
                      |+|.+.|.. ......+.|.|
T Consensus        85 Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          85 YTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             EEEEEEeCCccEEEEEEEEEC
Confidence            999999987 45555555543

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.30  E-value=3.5e-06  Score=73.89  Aligned_cols=62  Identities=19%  Similarity=0.369  Sum_probs=49.2

Q ss_pred             EEEEEeec-CcCCCeEEEEeCCeeeccCC-----cEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        340 VEIPCKPD-GEPLPRISWSKDEAEFVEDR-----NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       340 vtL~C~v~-g~P~p~i~W~k~g~~i~~~~-----~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      +.|+|.+. |.|.+.|+|+|++.++....     .......++|.+.....+|.+.|+|+|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            78999976 67889999999999885421     1122345679999999999999999999988853

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.27  E-value=1.4e-06  Score=74.50  Aligned_cols=74  Identities=31%  Similarity=0.578  Sum_probs=50.5

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccC-CCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +|.+...+.......+. +.|.|.+.+.+ .+.|+|+ +..................|.|.++..+|.|.|+|.|+|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            36666666665555444 99999998877 7899999 221111111112223445689999999999999999986

...

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.27  E-value=4.6e-06  Score=74.15  Aligned_cols=77  Identities=22%  Similarity=0.462  Sum_probs=57.9

Q ss_pred             CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      ...+|.+|+++.|.|...+. .+++.|+++|..+..+.+......|  |.|..++.+|+|.|+|.+. ..|-....+.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G--LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~   79 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG--LLILVTSPEHSGTYRCYSE-EEGFQQLVASYS   79 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC--CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence            45789999999999999875 5599999999998765444443444  5799999999999999987 334444434443


Q ss_pred             E
Q psy11143        133 I  133 (940)
Q Consensus       133 V  133 (940)
                      +
T Consensus        80 l   80 (85)
T cd05872          80 L   80 (85)
T ss_pred             E
Confidence            3

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA03376 BARF1; Provisional

Probab=98.24  E-value=1.1e-05  Score=80.08  Aligned_cols=122  Identities=20%  Similarity=0.307  Sum_probs=76.1

Q ss_pred             cEEEecCCeEEEEEEee---ccCCCeEEEEECCE----ee-c----------CCCCeEEE----eeceEEEEcccccCCC
Q psy11143         54 STTYSTGSTSRITCLVE---GHPLPQMTWFHDGN----SL-D----------SDDHVTYE----HDGFVLVLNGVRESDA  111 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~---g~P~p~V~W~kdg~----~I-~----------~~~~~~~~----~~gs~L~I~~v~~~Ds  111 (940)
                      .+.+..|+.++|+|...   ..+...|.|+|.+.    .+ .          ...+.+..    .+...|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            56678999999999975   22455899999421    11 0          01122222    2334589999999999


Q ss_pred             eEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCe
Q psy11143        112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA  177 (940)
Q Consensus       112 G~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~  177 (940)
                      |+|+|.+..........-.|++..  +-.+.+.........-+..++.|.+.|.|.|.+.|..+..
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~--~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVK--PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeee--cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            999999987654443333333321  1112222211112225678899998899999999988543

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.23  E-value=2.8e-06  Score=76.85  Aligned_cols=74  Identities=16%  Similarity=0.302  Sum_probs=56.4

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .|.+...|. ..+..|++|+|.|... .+...+.|+|+|..............+.|.|.+++.+|+|.|+|.+.|.
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            466777664 4688999999999986 6777999999987543211111223457999999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.22  E-value=3e-06  Score=76.62  Aligned_cols=74  Identities=12%  Similarity=0.308  Sum_probs=55.5

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .|.+...|. ..|.+|+.|+|+|... .+...+.|+|+|....... .........+.|.+|+.+|+|.|+|.+.+.
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            466667765 4689999999999885 5667899999998654221 111123345799999999999999999876

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.19  E-value=8.6e-06  Score=71.97  Aligned_cols=72  Identities=21%  Similarity=0.410  Sum_probs=50.8

Q ss_pred             eEEEEEEeec-cCCCeEEEEECCEeecCCCCeEE-Eee------ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         62 TSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTY-EHD------GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        62 sv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~-~~~------gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      .+.|+|.+.| +|.+.|+|+|+|+.+........ ..+      .+.|.|.....+|.|.|+|.|.|..........+++
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            3689999987 68889999999998764321111 111      235778877888999999999998765555444443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.17  E-value=9.4e-06  Score=72.14  Aligned_cols=78  Identities=23%  Similarity=0.473  Sum_probs=61.6

Q ss_pred             CeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEE
Q psy11143        237 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  316 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~  316 (940)
                      ...++..|+++.|.|...+. .+.+.|+++|..+..+.++.....|  |.|..++..|+|.|.|.+. +.|-....+.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G--LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~   79 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG--LLILVTSPEHSGTYRCYSE-EEGFQQLVASYS   79 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC--CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence            45678899999999998875 6699999999999877666665555  7899999999999999986 555555544444


Q ss_pred             Ee
Q psy11143        317 IN  318 (940)
Q Consensus       317 V~  318 (940)
                      +.
T Consensus        80 l~   81 (85)
T cd05872          80 LN   81 (85)
T ss_pred             EE
Confidence            43

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.17  E-value=1.7e-05  Score=72.09  Aligned_cols=68  Identities=19%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             CcEEEecCCeEEEEEEeeccCCCeEEEEECCEee--------cCCCCeEEEe---eceEEEEcccccCCCeEEEEEEEe
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--------DSDDHVTYEH---DGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I--------~~~~~~~~~~---~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +++++.+|++++|+|.+.+.....+.|++-+..+        ....++....   ....|.|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            5688999999999999988766678888765332        2334444332   233589999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.17  E-value=1.1e-05  Score=71.22  Aligned_cols=71  Identities=23%  Similarity=0.474  Sum_probs=50.3

Q ss_pred             EEEEEEEee-eCCCeEEEEECCeecCCCCce-EEeecC------eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHV-TYEHDG------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~-~~~~~g------~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      +.|.|.+.| +|.+.|+|+++|..+...... ....++      +.|.|.....+|.|.|+|.|.|..........+.+
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 688899999999988643211 111222      24777777778889999999998765554444443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.12  E-value=1.3e-05  Score=73.40  Aligned_cols=79  Identities=16%  Similarity=0.280  Sum_probs=57.9

Q ss_pred             eeEEecCCeEEEEEEEe------ee-----CCCeEEEEECCeecCCCCc-----eEEeecCeEEEEeeeccCCCeEEEEE
Q psy11143        238 STTYSTGSTSRITCLVE------GH-----PLPQMTWFHDGNSLDSDDH-----VTYEHDGFVLVLNGVRESDAGVYNCV  301 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~------G~-----P~p~ItW~k~g~~l~~~~~-----~~~~~~g~sL~I~~v~~~DsG~YtC~  301 (940)
                      ...+.+|+.+.|.|..-      ++     ....+.|+|++..+.....     ..+...+..|.|.++..+|+|.|+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            35678999999999851      11     1337999999755543321     34555666799999999999999999


Q ss_pred             EEeCCCCceeEEEEE
Q psy11143        302 AQNSEGSAESVAMIR  316 (940)
Q Consensus       302 A~N~~Gs~~~s~~l~  316 (940)
                      +.|.......++.|+
T Consensus        89 ~rN~t~C~~~~i~l~  103 (104)
T cd05896          89 LRNSTYCMKVSMSLT  103 (104)
T ss_pred             ECCCCcceEEEEEEE
Confidence            999886666555544

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.10  E-value=1.8e-05  Score=73.80  Aligned_cols=73  Identities=18%  Similarity=0.337  Sum_probs=54.1

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEe------e--------cCCCCeEEEe----eceEEEEcccccCCC
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS------L--------DSDDHVTYEH----DGFVLVLNGVRESDA  111 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~------I--------~~~~~~~~~~----~gs~L~I~~v~~~Ds  111 (940)
                      ..|..+.+.+|++|+|.|.+.+.+...+.|||....      +        ....++.+..    ....|.|.+++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            456778899999999999998777779999985311      0        0122333331    345689999999999


Q ss_pred             eEEEEEEEeCC
Q psy11143        112 GVYNCVAQNSE  122 (940)
Q Consensus       112 G~YtC~a~n~~  122 (940)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PHA03376 BARF1; Provisional

Probab=98.10  E-value=3.6e-05  Score=76.50  Aligned_cols=122  Identities=20%  Similarity=0.322  Sum_probs=77.1

Q ss_pred             eeEEecCCeEEEEEEEe---eeCCCeEEEEECCe----ec-------------CCCCceEEe--ecCeEEEEeeeccCCC
Q psy11143        238 STTYSTGSTSRITCLVE---GHPLPQMTWFHDGN----SL-------------DSDDHVTYE--HDGFVLVLNGVRESDA  295 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~---G~P~p~ItW~k~g~----~l-------------~~~~~~~~~--~~g~sL~I~~v~~~Ds  295 (940)
                      ......|+.+.|+|...   ..+.-.|.|+|.+.    .+             +...+..+.  .+..+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            45567899999999764   22445899999432    11             111112221  2334599999999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCe
Q psy11143        296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA  361 (940)
Q Consensus       296 G~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~  361 (940)
                      |+|+|...-..........+.+.  .|-.+.+.......+.-...++.|.+.|+|.|.++|.-+..
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V--~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVV--KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeee--ecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            99999998765444333333332  12223332222233446778999999999999999987643

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.08  E-value=3.2e-05  Score=70.36  Aligned_cols=67  Identities=18%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             CceeecCCCeEEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEee-ec---eEEEecCCCCCCeEEEEEEEe
Q psy11143        330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIHR-TG---SLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~~-~~---sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .++.+.+|++++|+|.+.+.....+.|++.+..+        ..+.|+.... ++   +|.|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            4578999999999999998877788888766432        3455666554 22   699999999999999999976

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.02  E-value=4.7e-05  Score=72.10  Aligned_cols=82  Identities=15%  Similarity=0.303  Sum_probs=55.0

Q ss_pred             CCCcEEEecCCeEEEEEEeecc----CCCeEEEE---------------ECCEeecCC-----CCeEEE----eeceEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGH----PLPQMTWF---------------HDGNSLDSD-----DHVTYE----HDGFVLV  102 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~----P~p~V~W~---------------kdg~~I~~~-----~~~~~~----~~gs~L~  102 (940)
                      .+..+.+..|+.++|.|.....    +..+|.|.               ++|......     .+..+.    .....|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            3456778999999999998653    33589993               344443211     133332    2234589


Q ss_pred             EcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143        103 LNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      |.+++.+|.|+|+|.+.|..+.......+.
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~  113 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPDIVGKSSQVT  113 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCCcCCceeEEE
Confidence            999999999999999999766433333333

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.02  E-value=2.5e-05  Score=72.55  Aligned_cols=81  Identities=20%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCe-----ec----c----------ccCceEEeeeceEEEeecccCCC
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA-----EF----V----------EDRNHKIHRTGSLRLYNIGPQDS  203 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~-----~i----~----------~~~~~~~~~~~sL~I~~v~~~Ds  203 (940)
                      +.+.+..+.+|+++.|.|.....+...++|+|+..     .+    .          ...+..+..+++|.|.+++.+|+
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~   82 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT   82 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence            44556678899999999976544444899999521     11    0          12455566678999999999999


Q ss_pred             ceEEEEEEcCCc-ceeeeeee
Q psy11143        204 GLYRCTASNLLG-EDVAEGYL  223 (940)
Q Consensus       204 G~YtC~a~N~~g-~~s~s~~L  223 (940)
                      |.|+|.+.+... .......|
T Consensus        83 G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          83 GFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEEEEEeCCccEEEEEEEE
Confidence            999999998763 34444444

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.00  E-value=3.6e-05  Score=71.58  Aligned_cols=76  Identities=30%  Similarity=0.526  Sum_probs=56.1

Q ss_pred             CCCeEEEEEeecCcC------CCeEEEEeCC-----e-ee--ccCC----------cEEE----eeeceEEEecCCCCCC
Q psy11143        336 AGSSVEIPCKPDGEP------LPRISWSKDE-----A-EF--VEDR----------NHKI----HRTGSLRLYNIGPQDS  387 (940)
Q Consensus       336 ~G~~vtL~C~v~g~P------~p~i~W~k~g-----~-~i--~~~~----------~~~i----~~~~sL~I~~v~~~D~  387 (940)
                      .|++|+|.|.....+      .+.|.|+|..     . .+  ..+.          +...    ..+.+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987654      4599999862     1 11  0111          1111    1245799999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        388 GLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       388 G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      |.|.|.+.+..+..+..+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999988888899998875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.99  E-value=3e-05  Score=72.03  Aligned_cols=76  Identities=28%  Similarity=0.510  Sum_probs=57.1

Q ss_pred             CCCeEEEEEeecCcC------CCeEEEEeCCe------e-e-cc----------CCcEEEee----eceEEEecCCCCCC
Q psy11143        336 AGSSVEIPCKPDGEP------LPRISWSKDEA------E-F-VE----------DRNHKIHR----TGSLRLYNIGPQDS  387 (940)
Q Consensus       336 ~G~~vtL~C~v~g~P------~p~i~W~k~g~------~-i-~~----------~~~~~i~~----~~sL~I~~v~~~D~  387 (940)
                      .|++|+|.|.....|      ...|.|+|...      . + ..          ..++.+..    ..+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999987653      34799998531      1 1 10          13444321    34799999999999


Q ss_pred             eEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        388 GLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       388 G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      |.|.|.+.+..|..+..+.|.|++
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999999999999998875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.97  E-value=2.9e-05  Score=69.92  Aligned_cols=72  Identities=29%  Similarity=0.398  Sum_probs=52.9

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeee-----c-------------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEF-----V-------------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i-----~-------------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      |++|+|.|.....+...|.|++.....     .             ...+..+..+++|.|.+++.+|+|.|+|.+.+..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            789999999887666699999865321     0             1234555567899999999999999999999876


Q ss_pred             ee-EEEEEEEE
Q psy11143        399 GE-DVAEGYLT  408 (940)
Q Consensus       399 G~-~~~s~~L~  408 (940)
                      |. ......|.
T Consensus        81 ~~~~~~~~~l~   91 (92)
T cd05741          81 GVTENAKFFLR   91 (92)
T ss_pred             CcEEEEEEEEE
Confidence            53 33344443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.95  E-value=6.4e-05  Score=69.86  Aligned_cols=77  Identities=18%  Similarity=0.390  Sum_probs=53.5

Q ss_pred             cCCeEEEEEEeeccC------CCeEEEEECC-----E-ee--cCC--------CCeEEE-----eeceEEEEcccccCCC
Q psy11143         59 TGSTSRITCLVEGHP------LPQMTWFHDG-----N-SL--DSD--------DHVTYE-----HDGFVLVLNGVRESDA  111 (940)
Q Consensus        59 eGesv~L~C~v~g~P------~p~V~W~kdg-----~-~I--~~~--------~~~~~~-----~~gs~L~I~~v~~~Ds  111 (940)
                      .|+.|+|.|.....+      ...|.|+|..     . .+  ...        .+.++.     .....|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987643      4599999862     1 11  011        111221     1235689999999999


Q ss_pred             eEEEEEEEeCCCceEEEEEEEEec
Q psy11143        112 GVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       112 G~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998877666677777754

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.95  E-value=3.4e-05  Score=72.26  Aligned_cols=73  Identities=18%  Similarity=0.356  Sum_probs=53.1

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCE--eec--------------C--CCCeEEEe---eceEEEEcccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLD--------------S--DDHVTYEH---DGFVLVLNGVR  107 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~--~I~--------------~--~~~~~~~~---~gs~L~I~~v~  107 (940)
                      ...|..+.+.+|++|+|.|.+.+ +...+.|||...  ...              .  ..++....   ....|.|.+++
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            34677888999999999999987 667899998532  100              0  12222221   23568999999


Q ss_pred             cCCCeEEEEEEEeCC
Q psy11143        108 ESDAGVYNCVAQNSE  122 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~  122 (940)
                      .+|+|.|.|.+.+..
T Consensus        81 ~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          81 PEDSAVYLCASSLGG   95 (110)
T ss_pred             hhhCEEEEEEeeCCC
Confidence            999999999998653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.93  E-value=7.2e-05  Score=69.48  Aligned_cols=77  Identities=19%  Similarity=0.354  Sum_probs=54.1

Q ss_pred             cCCeEEEEEEeeccC------CCeEEEEECCE----e----ecC----------CCCeEEE---eeceEEEEcccccCCC
Q psy11143         59 TGSTSRITCLVEGHP------LPQMTWFHDGN----S----LDS----------DDHVTYE---HDGFVLVLNGVRESDA  111 (940)
Q Consensus        59 eGesv~L~C~v~g~P------~p~V~W~kdg~----~----I~~----------~~~~~~~---~~gs~L~I~~v~~~Ds  111 (940)
                      .|+.|+|.|.....|      ...|.|+|...    .    +..          ..+..+.   .....|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999987653      34799998641    0    110          1122221   1134689999999999


Q ss_pred             eEEEEEEEeCCCceEEEEEEEEec
Q psy11143        112 GVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       112 G~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      |.|.|.+.+..+..+....|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999888777777777754

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.92  E-value=3.4e-05  Score=69.49  Aligned_cols=66  Identities=17%  Similarity=0.314  Sum_probs=47.7

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCEeecC------------------CCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGNSLDS------------------DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~------------------~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      |++|+|.|.....+...|.|+++......                  ..+..+..+ ..|.|.+++.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEcC
Confidence            78999999987666669999987633211                  112222233 55799999999999999999987


Q ss_pred             CCceE
Q psy11143        122 EGSAE  126 (940)
Q Consensus       122 ~g~~~  126 (940)
                      .+...
T Consensus        80 ~~~~~   84 (92)
T cd05741          80 NGVTE   84 (92)
T ss_pred             CCcEE
Confidence            75433

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.90  E-value=4.5e-05  Score=71.08  Aligned_cols=72  Identities=19%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCe---e---e--------ccCCcEEEee-----eceEEEecCCCCCCe
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA---E---F--------VEDRNHKIHR-----TGSLRLYNIGPQDSG  388 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~---~---i--------~~~~~~~i~~-----~~sL~I~~v~~~D~G  388 (940)
                      .|..+.+.+|++|+|.|.+.+.+.+.+.|+|...   .   +        ....++.+..     ..+|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            4556789999999999999988888999998431   0   0        1234555432     337999999999999


Q ss_pred             EEEEEEEeCCe
Q psy11143        389 LYRCTASNLLG  399 (940)
Q Consensus       389 ~YtC~A~N~~G  399 (940)
                      .|.|.+.+..+
T Consensus        84 ~Y~C~~~~~~~   94 (109)
T cd04983          84 VYFCALSESGG   94 (109)
T ss_pred             EEEEEEecCCC
Confidence            99999997643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.89  E-value=7.3e-05  Score=70.27  Aligned_cols=77  Identities=21%  Similarity=0.405  Sum_probs=53.6

Q ss_pred             cCCeEEEEEEeeccC------------CCeEEEEECC--E---eec---------C--CCCeEEEe-----eceEEEEcc
Q psy11143         59 TGSTSRITCLVEGHP------------LPQMTWFHDG--N---SLD---------S--DDHVTYEH-----DGFVLVLNG  105 (940)
Q Consensus        59 eGesv~L~C~v~g~P------------~p~V~W~kdg--~---~I~---------~--~~~~~~~~-----~gs~L~I~~  105 (940)
                      .|++|+|.|......            .+.|.|+|..  .   .+.         .  ..++.+..     ....|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986432            3589999842  1   110         0  11233322     456789999


Q ss_pred             cccCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        106 VRESDAGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      ++.+|+|+|+|.+.+..........|.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999997767666677777754

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.88  E-value=6.5e-05  Score=69.85  Aligned_cols=74  Identities=23%  Similarity=0.440  Sum_probs=51.7

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccC-CCeEEEEECC--E---eec-------C--CCCeEEEe--eceEEEEcccccCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDG--N---SLD-------S--DDHVTYEH--DGFVLVLNGVRESD  110 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~kdg--~---~I~-------~--~~~~~~~~--~gs~L~I~~v~~~D  110 (940)
                      +...|....+.+|++|+|.|.+.+.. ...+.|||..  +   .+.       .  ..++....  ....|.|.+++.+|
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            34567788899999999999997654 5689999742  1   111       0  11222221  22458999999999


Q ss_pred             CeEEEEEEEeC
Q psy11143        111 AGVYNCVAQNS  121 (940)
Q Consensus       111 sG~YtC~a~n~  121 (940)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.87  E-value=7.3e-05  Score=70.29  Aligned_cols=76  Identities=28%  Similarity=0.431  Sum_probs=56.0

Q ss_pred             CCCeEEEEEeecCcC------------CCeEEEEeC--Ce--e-e---------cc--CCcEEEe------eeceEEEec
Q psy11143        336 AGSSVEIPCKPDGEP------------LPRISWSKD--EA--E-F---------VE--DRNHKIH------RTGSLRLYN  381 (940)
Q Consensus       336 ~G~~vtL~C~v~g~P------------~p~i~W~k~--g~--~-i---------~~--~~~~~i~------~~~sL~I~~  381 (940)
                      .|++|+|.|.....+            .+.|.|+|-  |.  . +         ..  ..|+.+.      .+.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999987432            459999984  21  1 1         00  1244443      245899999


Q ss_pred             CCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       382 v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      ++.+|+|+|.|.+.+..........|.|++
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998888888888888875

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.85  E-value=9.7e-05  Score=67.79  Aligned_cols=73  Identities=22%  Similarity=0.348  Sum_probs=50.7

Q ss_pred             CCeEEEEEeecCcCC---CeEEEEeCCe--ee---------c------cCCcEEEee------eceEEEecCCCCCCeEE
Q psy11143        337 GSSVEIPCKPDGEPL---PRISWSKDEA--EF---------V------EDRNHKIHR------TGSLRLYNIGPQDSGLY  390 (940)
Q Consensus       337 G~~vtL~C~v~g~P~---p~i~W~k~g~--~i---------~------~~~~~~i~~------~~sL~I~~v~~~D~G~Y  390 (940)
                      |++|+|.|.......   ..+.|+|...  .+         .      -.+|..+..      ..+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            688999998753221   2688887541  11         0      012433321      24799999999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEE
Q psy11143        391 RCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       391 tC~A~N~~G~~~~s~~L~V  409 (940)
                      +|.+.|..+..+..+.|+|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998888777777776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.81  E-value=0.0011  Score=74.44  Aligned_cols=197  Identities=14%  Similarity=0.190  Sum_probs=117.1

Q ss_pred             CcccEEEECCCCCCCCeEEEEEEEcC---CceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC--eEE
Q psy11143          5 RSSTELVISGVQREHGGRYSCVAGNP---AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--QMT   78 (940)
Q Consensus         5 ~s~~tL~I~~v~~sDsG~Y~C~a~n~---~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p--~V~   78 (940)
                      .+.-.|+|.+++..++|.|+=.+.+.   .......++|.+..+|.+.+.+..  +.+|+...-.|.+..+ |+-  .+.
T Consensus       286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~Svrlr  363 (566)
T PHA03269        286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVK  363 (566)
T ss_pred             CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEE
Confidence            34567999999999999998766532   224455677777778877776655  7899999999999774 433  789


Q ss_pred             EEECCEeecCCC---CeEEEeeceEEEEccccc-CC-Ce-----EEEEEEEeCCCce-EE--EEEEEEecccCCeeEecC
Q psy11143         79 WFHDGNSLDSDD---HVTYEHDGFVLVLNGVRE-SD-AG-----VYNCVAQNSEGSA-ES--VAMIRINGHRAPRLVVKP  145 (940)
Q Consensus        79 W~kdg~~I~~~~---~~~~~~~gs~L~I~~v~~-~D-sG-----~YtC~a~n~~g~~-~~--~~~L~V~~~~~P~~~~~p  145 (940)
                      |++||.++....   ..+...+|..-.++-++. ++ .+     ..+|.+.=..+.. ..  ++...-.+.+.|.+.+..
T Consensus       364 Wf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~F  443 (566)
T PHA03269        364 WTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIEI  443 (566)
T ss_pred             EEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEEE
Confidence            999999887421   122234443323333322 22 34     4599886433322 22  344444444556555443


Q ss_pred             CceeecCCCcEEEEEEeCCCCC--CeEEEeeCCeeccccCceEEe-----eeceEEEee---cccCC-CceEEEEEEc
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRNHKIH-----RTGSLRLYN---IGPQD-SGLYRCTASN  212 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~---v~~~D-sG~YtC~a~N  212 (940)
                           ..|.   ..|.+.-.|.  ..+.|..++...... .....     ..+...|.+   ++..| --+|+|....
T Consensus       444 -----edG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~-~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G  512 (566)
T PHA03269        444 -----IDGH---IVCLAKCVPRGVVHFNWWINDIPIEHE-NSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG  512 (566)
T ss_pred             -----eCCE---EEEecccccCCCceEEEEecCCCCCCc-cceeeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence                 2333   4577765554  479999877654332 22221     122355555   33333 2489999863

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.80  E-value=0.00012  Score=67.14  Aligned_cols=74  Identities=19%  Similarity=0.409  Sum_probs=48.5

Q ss_pred             CCeEEEEEEeeccC---CCeEEEEECCE--ee---------cC------CCCeEEE-----eeceEEEEcccccCCCeEE
Q psy11143         60 GSTSRITCLVEGHP---LPQMTWFHDGN--SL---------DS------DDHVTYE-----HDGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        60 Gesv~L~C~v~g~P---~p~V~W~kdg~--~I---------~~------~~~~~~~-----~~gs~L~I~~v~~~DsG~Y  114 (940)
                      |++|+|.|......   ...|.|+|...  .+         ..      ..+..+.     .....|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78999999986322   23688887541  11         10      0122221     1225689999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEE
Q psy11143        115 NCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L~V  133 (940)
                      +|.+.+..+..+....|+|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776555665554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.80  E-value=0.00013  Score=69.07  Aligned_cols=73  Identities=18%  Similarity=0.337  Sum_probs=51.6

Q ss_pred             CCceeecCCCeEEEEEeecCc----CCCeEEEEe---------------CCeeeccC-----CcEEEe-----eeceEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGE----PLPRISWSK---------------DEAEFVED-----RNHKIH-----RTGSLRL  379 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~----P~p~i~W~k---------------~g~~i~~~-----~~~~i~-----~~~sL~I  379 (940)
                      +..+.+..|++++|.|.....    +...|.|.+               +|......     .|..+.     .+.+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            445678899999999998653    335999943               23322211     244332     3458999


Q ss_pred             ecCCCCCCeEEEEEEEeCCeeE
Q psy11143        380 YNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       380 ~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      .+++.+|+|+|+|.+.|.-+..
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCcC
Confidence            9999999999999999976643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.79  E-value=6.6e-05  Score=68.77  Aligned_cols=76  Identities=16%  Similarity=0.357  Sum_probs=51.6

Q ss_pred             ecCCeEEEEEEeec-cCCCeEEEEECCEeec--C-----------C----CCeEEEeeceEEEEcccccCCCeEEEEEEE
Q psy11143         58 STGSTSRITCLVEG-HPLPQMTWFHDGNSLD--S-----------D----DHVTYEHDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~--~-----------~----~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      ..|++|+|.|.... .....|.|+|....+.  .           .    .+..+..+...|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            37999999998754 4455899998643221  0           0    112222334668999999999999999999


Q ss_pred             eCCCceEE-EEEEEE
Q psy11143        120 NSEGSAES-VAMIRI  133 (940)
Q Consensus       120 n~~g~~~~-~~~L~V  133 (940)
                      ...|.... ...|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            88765433 444444

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.77  E-value=0.0017  Score=72.27  Aligned_cols=193  Identities=18%  Similarity=0.245  Sum_probs=115.0

Q ss_pred             cEEEECCCCCCCCeEEEEEEEcCCce--EEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC--eEEEEEC
Q psy11143          8 TELVISGVQREHGGRYSCVAGNPAGV--YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--QMTWFHD   82 (940)
Q Consensus         8 ~tL~I~~v~~sDsG~Y~C~a~n~~g~--~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p--~V~W~kd   82 (940)
                      ..|+|..++...+|.|+=...+..+.  ..+.++|....+|.+.+.+..  +.+|+...-.|.+..+ |+-  .+.||+|
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            45999999999999999998876663  345566666678887776655  6899999999999774 432  7899999


Q ss_pred             CEeecCCCCeEEE----eeceEEEEcccccCCCe------EEEEEEEeCCCce-EE--EEEEEEecccCCeeEecCCcee
Q psy11143         83 GNSLDSDDHVTYE----HDGFVLVLNGVRESDAG------VYNCVAQNSEGSA-ES--VAMIRINGHRAPRLVVKPFDMR  149 (940)
Q Consensus        83 g~~I~~~~~~~~~----~~gs~L~I~~v~~~DsG------~YtC~a~n~~g~~-~~--~~~L~V~~~~~P~~~~~p~~~~  149 (940)
                      |.++......+..    .++.+ .++-++.++.+      ..+|.+.=..... .+  ++...-.+.+.|.+.+..    
T Consensus       260 g~~V~~~~~i~~~~~~~~dGfs-~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~F----  334 (466)
T PHA03270        260 GDEVFAPERVRTRVDAQRDGFS-ATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEMEF----  334 (466)
T ss_pred             CccccCcceeeeeeEecCCCee-EEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEEE----
Confidence            9988542222211    33322 44444444433      6799986433332 22  333443444455555443    


Q ss_pred             ecCCCcEEEEEEeCCCC-CCeEEEeeCCeeccccCceEEe-----eeceEEEeecc-c-CCCceEEEEEE
Q psy11143        150 APAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIG-P-QDSGLYRCTAS  211 (940)
Q Consensus       150 v~~Ge~vtL~C~v~g~P-~p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~v~-~-~DsG~YtC~a~  211 (940)
                       ..|.   ..|.+.-.| ...+.|..++............     ..+...|.+.- . ++..+|+|.+.
T Consensus       335 -~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd~~~eYTCrl~  400 (466)
T PHA03270        335 -GGDE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSREHSEYTCRLV  400 (466)
T ss_pred             -eCCE---EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccccCCceEEEEEe
Confidence             2333   346665444 3489998876555433221111     11223333321 1 12469999986

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.77  E-value=0.00015  Score=66.17  Aligned_cols=73  Identities=15%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             CeEEEEEEeeccC---CCeEEEEECCEe----e-----------cCCCCeEEE--e---eceEEEEcccccCCCeEEEEE
Q psy11143         61 STSRITCLVEGHP---LPQMTWFHDGNS----L-----------DSDDHVTYE--H---DGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        61 esv~L~C~v~g~P---~p~V~W~kdg~~----I-----------~~~~~~~~~--~---~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      ++|+|.|.....+   ...|.|+|....    +           ......+..  .   ....|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4789999987654   347999986421    0           111122222  1   245689999999999999999


Q ss_pred             EEe-CCCceEEEEEEEE
Q psy11143        118 AQN-SEGSAESVAMIRI  133 (940)
Q Consensus       118 a~n-~~g~~~~~~~L~V  133 (940)
                      +.. ..|..+....|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            975 5666666666665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.76  E-value=0.00017  Score=68.24  Aligned_cols=74  Identities=16%  Similarity=0.355  Sum_probs=49.7

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC----CCeEEEEEC----CEe--e---cC------CCC--eEEE------eeceEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHD----GNS--L---DS------DDH--VTYE------HDGFVLVL  103 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P----~p~V~W~kd----g~~--I---~~------~~~--~~~~------~~gs~L~I  103 (940)
                      .|..+.+.+|++++|.|.....+    ...|.|++.    +..  +   ..      ..+  .++.      .....|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            35678899999999999986433    236999752    111  1   00      001  1221      12345899


Q ss_pred             cccccCCCeEEEEEEEeCCCc
Q psy11143        104 NGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      .+++.+|+|.|+|.+.|..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999987654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.76  E-value=8.2e-05  Score=68.67  Aligned_cols=68  Identities=21%  Similarity=0.445  Sum_probs=49.5

Q ss_pred             EEecCCeEEEEEEeecc-CCCeEEEEECCE-----eec------------CCCCeEEEe----eceEEEEcccccCCCeE
Q psy11143         56 TYSTGSTSRITCLVEGH-PLPQMTWFHDGN-----SLD------------SDDHVTYEH----DGFVLVLNGVRESDAGV  113 (940)
Q Consensus        56 ~V~eGesv~L~C~v~g~-P~p~V~W~kdg~-----~I~------------~~~~~~~~~----~gs~L~I~~v~~~DsG~  113 (940)
                      ++.+|++|+|.|.+.+. +...+.|+|...     .+.            ...+..+..    ....|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57899999999999876 667899998532     110            112222222    23468999999999999


Q ss_pred             EEEEEEeCCC
Q psy11143        114 YNCVAQNSEG  123 (940)
Q Consensus       114 YtC~a~n~~g  123 (940)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.76  E-value=0.00018  Score=68.05  Aligned_cols=74  Identities=22%  Similarity=0.399  Sum_probs=49.5

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC----CCeEEEEECCE------eec----------CCC----CeEEE----eeceEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDGN------SLD----------SDD----HVTYE----HDGFVLV  102 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P----~p~V~W~kdg~------~I~----------~~~----~~~~~----~~gs~L~  102 (940)
                      .|..+.+.+|+.|+|.|..+...    ...|.|++...      .+-          ...    +..+.    .....|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            35677889999999999986432    24699986321      110          011    11111    1124589


Q ss_pred             EcccccCCCeEEEEEEEeCCCc
Q psy11143        103 LNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      |.+++.+|+|.|.|.+.+....
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCC
Confidence            9999999999999999987554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.75  E-value=0.0001  Score=69.05  Aligned_cols=72  Identities=22%  Similarity=0.395  Sum_probs=53.1

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCe--e---ec-------------cCCcEEEee----eceEEEecCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA--E---FV-------------EDRNHKIHR----TGSLRLYNIGP  384 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~--~---i~-------------~~~~~~i~~----~~sL~I~~v~~  384 (940)
                      ..|..+.+.+|++|+|.|.+.+ +.+.+.|+|...  .   |.             ...++.+..    ..+|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3456678999999999999988 778999998531  1   10             123444432    23799999999


Q ss_pred             CCCeEEEEEEEeCCe
Q psy11143        385 QDSGLYRCTASNLLG  399 (940)
Q Consensus       385 ~D~G~YtC~A~N~~G  399 (940)
                      +|+|.|.|.+.+..|
T Consensus        82 ~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          82 EDSAVYLCASSLGGG   96 (110)
T ss_pred             hhCEEEEEEeeCCCC
Confidence            999999999987543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.74  E-value=0.00027  Score=66.38  Aligned_cols=77  Identities=19%  Similarity=0.432  Sum_probs=53.6

Q ss_pred             cCCeEEEEEEeeccC----------CCeEEEEECC--Eee------------cC--CCCeEEE-----eeceEEEEcccc
Q psy11143         59 TGSTSRITCLVEGHP----------LPQMTWFHDG--NSL------------DS--DDHVTYE-----HDGFVLVLNGVR  107 (940)
Q Consensus        59 eGesv~L~C~v~g~P----------~p~V~W~kdg--~~I------------~~--~~~~~~~-----~~gs~L~I~~v~  107 (940)
                      .|++|+|.|.....+          ...|.|+|..  ...            ..  ..+..+.     .....|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999987543          2579999852  111            00  0122221     123568999999


Q ss_pred             cCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        108 ESDAGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      .+|+|+|.|.+.......+..+.|.|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998777777777777764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.73  E-value=0.00014  Score=66.70  Aligned_cols=78  Identities=13%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeec-cCCCe--EEEEECCEeecCCCCeE----EEeeceEEEEcccccCCCeEEEEEEE
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEG-HPLPQ--MTWFHDGNSLDSDDHVT----YEHDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g-~P~p~--V~W~kdg~~I~~~~~~~----~~~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .+.+.+....+.+|+.++|+|.+.| .|.+.  |.|||++..+.......    -......|.+.....+|.-.|+|+|.
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~   82 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETE   82 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence            4556666667899999999999976 67775  79999999986432111    01122345665444444448999999


Q ss_pred             eCCCc
Q psy11143        120 NSEGS  124 (940)
Q Consensus       120 n~~g~  124 (940)
                      +..+.
T Consensus        83 l~l~~   87 (100)
T cd05755          83 LDLRP   87 (100)
T ss_pred             eccCc
Confidence            87654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.72  E-value=0.00016  Score=66.02  Aligned_cols=72  Identities=19%  Similarity=0.327  Sum_probs=51.6

Q ss_pred             CeEEEEEeecCcC---CCeEEEEeCCee----e-----------cc--CCcEEEe----eeceEEEecCCCCCCeEEEEE
Q psy11143        338 SSVEIPCKPDGEP---LPRISWSKDEAE----F-----------VE--DRNHKIH----RTGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       338 ~~vtL~C~v~g~P---~p~i~W~k~g~~----i-----------~~--~~~~~i~----~~~sL~I~~v~~~D~G~YtC~  393 (940)
                      ++|+|.|.....+   ...|.|+|....    +           ..  ..+..+.    .+.+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4799999987654   348999985421    0           11  1222222    245899999999999999999


Q ss_pred             EEe-CCeeEEEEEEEEE
Q psy11143        394 ASN-LLGEDVAEGYLTV  409 (940)
Q Consensus       394 A~N-~~G~~~~s~~L~V  409 (940)
                      +.+ ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            975 6788888888876

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.69  E-value=0.00014  Score=68.69  Aligned_cols=71  Identities=20%  Similarity=0.456  Sum_probs=51.5

Q ss_pred             eCCCcEEEecCCeEEEEEEeec--cCCCeEEEEEC--CEe----e--c-----------CCCCeEEEe----eceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHD--GNS----L--D-----------SDDHVTYEH----DGFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kd--g~~----I--~-----------~~~~~~~~~----~gs~L~I~  104 (940)
                      ..|..+.+.+|++|+|.|.+.+  .+.+.+.|||.  +..    +  .           ...++.+..    ....|+|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            3466778899999999999977  57779999984  211    0  0           122333332    23568999


Q ss_pred             ccccCCCeEEEEEEEe
Q psy11143        105 GVRESDAGVYNCVAQN  120 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n  120 (940)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.68  E-value=0.00029  Score=66.16  Aligned_cols=76  Identities=32%  Similarity=0.490  Sum_probs=55.9

Q ss_pred             CCCeEEEEEeecCcC----------CCeEEEEeCC--ee---e---------c--cCCcEEEe------eeceEEEecCC
Q psy11143        336 AGSSVEIPCKPDGEP----------LPRISWSKDE--AE---F---------V--EDRNHKIH------RTGSLRLYNIG  383 (940)
Q Consensus       336 ~G~~vtL~C~v~g~P----------~p~i~W~k~g--~~---i---------~--~~~~~~i~------~~~sL~I~~v~  383 (940)
                      .|++|+|.|.....+          ...|.|+|..  ..   +         .  -.+|+.+.      ...+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            489999999987544          2579999852  11   0         0  01244432      23479999999


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        384 PQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       384 ~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      .+|+|+|.|.+.......+..+.|.|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999999878888888888875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.67  E-value=0.00012  Score=67.44  Aligned_cols=67  Identities=24%  Similarity=0.392  Sum_probs=50.1

Q ss_pred             eecCCCeEEEEEeecCc-CCCeEEEEeCCe-----ee------------ccCCcEEEee-----eceEEEecCCCCCCeE
Q psy11143        333 RAPAGSSVEIPCKPDGE-PLPRISWSKDEA-----EF------------VEDRNHKIHR-----TGSLRLYNIGPQDSGL  389 (940)
Q Consensus       333 ~v~~G~~vtL~C~v~g~-P~p~i~W~k~g~-----~i------------~~~~~~~i~~-----~~sL~I~~v~~~D~G~  389 (940)
                      .+.+|++|+|.|.+.+. +...+.|+|...     .+            ....++.+..     ..+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            56789999999999876 667999998432     11            0123444332     2379999999999999


Q ss_pred             EEEEEEeCCe
Q psy11143        390 YRCTASNLLG  399 (940)
Q Consensus       390 YtC~A~N~~G  399 (940)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.65  E-value=0.003  Score=71.10  Aligned_cols=194  Identities=18%  Similarity=0.285  Sum_probs=113.1

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEE--eCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC--eEEEEE
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV--NAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--QMTWFH   81 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V--~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p--~V~W~k   81 (940)
                      ...|+|..++..++|.|+=.+.+..+....+..++|  ..+|.+.+.+..  +.+|+...-.|.+..+ |+-  .+.|++
T Consensus       197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~  274 (486)
T PHA03273        197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYK  274 (486)
T ss_pred             ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEe
Confidence            356999999999999999776665554444444444  678887776655  7899999999999774 432  789999


Q ss_pred             CCEeecCCCCe----EEEeeceEEEEcccccCC------CeEEEEEEEeCCCce-EE--EEEEEEecccCCeeEecCCce
Q psy11143         82 DGNSLDSDDHV----TYEHDGFVLVLNGVRESD------AGVYNCVAQNSEGSA-ES--VAMIRINGHRAPRLVVKPFDM  148 (940)
Q Consensus        82 dg~~I~~~~~~----~~~~~gs~L~I~~v~~~D------sG~YtC~a~n~~g~~-~~--~~~L~V~~~~~P~~~~~p~~~  148 (940)
                      ||.++......    ....+|....++-++..+      .=..+|.+.=..... .+  .+...-.+.+.|.+.+..   
T Consensus       275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~F---  351 (486)
T PHA03273        275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVTV---  351 (486)
T ss_pred             CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEEE---
Confidence            99998732221    111223222233232222      236799986443332 22  233333344455555443   


Q ss_pred             eecCCCcEEEEEEeCCCCC--CeEEEeeCCeeccccCc-eEE-----eeeceEEEee---cccCCCc--eEEEEEEc
Q psy11143        149 RAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRN-HKI-----HRTGSLRLYN---IGPQDSG--LYRCTASN  212 (940)
Q Consensus       149 ~v~~Ge~vtL~C~v~g~P~--p~ItW~k~g~~i~~~~~-~~~-----~~~~sL~I~~---v~~~DsG--~YtC~a~N  212 (940)
                        ..|   ...|.+.-.|.  ..+.|..++. .+.... ...     ..-+...|..   +...| |  +|+|.+..
T Consensus       352 --~~G---~AVCtA~CVP~egV~l~W~v~D~-~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~d-gp~eYTCrl~G  421 (486)
T PHA03273        352 --EDG---DAVCTAKCVPSTGVFVSWSVNDH-LPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEEN-GEREYSCIIEG  421 (486)
T ss_pred             --eCC---EEEEecccccCCCeeEEEEccCC-CCCCcccccccccCCCCCCceeeeccccccccC-CceeEEEEEee
Confidence              233   34577776655  5899988663 211111 111     1122355555   33333 5  89999863

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.63  E-value=0.00018  Score=65.52  Aligned_cols=73  Identities=18%  Similarity=0.308  Sum_probs=50.3

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      |.+...| ...|.+|++|+|.|.... +...+.|+|+|.......  ..........+.|.+++.+|+|.|.|....
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            4555544 456889999999998765 445899999987533210  000011233579999999999999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.63  E-value=0.00038  Score=64.63  Aligned_cols=71  Identities=20%  Similarity=0.464  Sum_probs=51.1

Q ss_pred             CCCcEEEecCCeEEEEEEee-ccCCCeEEEEECCE-----eec---C-----------CCCeEEEee----ceEEEEccc
Q psy11143         51 RPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGN-----SLD---S-----------DDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~-----~I~---~-----------~~~~~~~~~----gs~L~I~~v  106 (940)
                      .|..+.+.+|+++.|.|... ......+.|++...     .+.   .           ..+..+..+    ...|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            45678899999999999998 44566899998322     111   0           112222222    245899999


Q ss_pred             ccCCCeEEEEEEEeC
Q psy11143        107 RESDAGVYNCVAQNS  121 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~  121 (940)
                      +.+|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999999987

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.62  E-value=0.00018  Score=65.90  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=52.9

Q ss_pred             cCCCeEEEEEeecC-cCCCeEEEEeCCeeec--c-----------C----CcEEEee-eceEEEecCCCCCCeEEEEEEE
Q psy11143        335 PAGSSVEIPCKPDG-EPLPRISWSKDEAEFV--E-----------D----RNHKIHR-TGSLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       335 ~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~--~-----------~----~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~  395 (940)
                      ..|++|+|.|.... .....+.|+|....+.  .           .    .++.+.. +.+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            46999999998764 4445899998643211  0           0    1333333 3689999999999999999999


Q ss_pred             eCCeeE-EEEEEEEE
Q psy11143        396 NLLGED-VAEGYLTV  409 (940)
Q Consensus       396 N~~G~~-~~s~~L~V  409 (940)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            988754 44555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.62  E-value=0.00029  Score=62.06  Aligned_cols=61  Identities=18%  Similarity=0.329  Sum_probs=44.2

Q ss_pred             EEEEEEeec-cCCCeEEEEECCEeecCCCCeE-EE----eeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVT-YE----HDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~-~~----~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +.|.|.+.| .|.+.|+|||+++++....... ..    ...+.|.|......|...|+|.|.|..-
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            689999976 7889999999999987543211 11    1224477876666677789999998764

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.61  E-value=0.00022  Score=66.25  Aligned_cols=72  Identities=17%  Similarity=0.378  Sum_probs=51.6

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcC-CCeEEEEeCC--e---eec---------cCCcEEEeee---ceEEEecCCCCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDE--A---EFV---------EDRNHKIHRT---GSLRLYNIGPQDS  387 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~g--~---~i~---------~~~~~~i~~~---~sL~I~~v~~~D~  387 (940)
                      ...|..+.+.+|++|+|.|.+.+.. ...+.|+|..  .   .+.         ...++.....   ..|.|.+++.+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3446667889999999999998765 5689999742  1   111         1124444322   3699999999999


Q ss_pred             eEEEEEEEeC
Q psy11143        388 GLYRCTASNL  397 (940)
Q Consensus       388 G~YtC~A~N~  397 (940)
                      |.|.|.+.+.
T Consensus        84 g~Y~Ca~~~~   93 (106)
T cd04980          84 AVYYCQQYGT   93 (106)
T ss_pred             EEEEEEEeCC
Confidence            9999999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.58  E-value=0.00039  Score=61.27  Aligned_cols=61  Identities=18%  Similarity=0.330  Sum_probs=43.9

Q ss_pred             EEEEEEEee-eCCCeEEEEECCeecCCCCceE-EeecC----eEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVT-YEHDG----FVLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~-~~~~g----~sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      ++|.|.+.| .|.+.|+||+++.++....... ....+    ++|.+..-..+|...|+|.|.|+.-
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            689999877 6888999999999997543211 11111    2377766666677789999999764

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.57  E-value=0.00037  Score=63.93  Aligned_cols=74  Identities=14%  Similarity=0.330  Sum_probs=50.4

Q ss_pred             EEcCCceeecCCCeEEEEEeecC-cCCCe--EEEEeCCeeeccCCcEE-----EeeeceEEEecCCCCCCe-EEEEEEEe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDG-EPLPR--ISWSKDEAEFVEDRNHK-----IHRTGSLRLYNIGPQDSG-LYRCTASN  396 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g-~P~p~--i~W~k~g~~i~~~~~~~-----i~~~~sL~I~~v~~~D~G-~YtC~A~N  396 (940)
                      .+.+....+.+|+.++|.|.+.| .|.+.  |.|+|++..+.......     .....+|++.. .++|.| .|+|.|.+
T Consensus         5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l   83 (100)
T cd05755           5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETEL   83 (100)
T ss_pred             EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEe
Confidence            34444456789999999999986 56665  79999998885432111     12234677654 455555 79999999


Q ss_pred             CCee
Q psy11143        397 LLGE  400 (940)
Q Consensus       397 ~~G~  400 (940)
                      ..+.
T Consensus        84 ~l~~   87 (100)
T cd05755          84 DLRP   87 (100)
T ss_pred             ccCc
Confidence            7664

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.54  E-value=0.0068  Score=67.71  Aligned_cols=194  Identities=14%  Similarity=0.284  Sum_probs=109.4

Q ss_pred             EEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCC-CCC--eEEEeeCCe
Q psy11143        101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP--RISWSKDEA  177 (940)
Q Consensus       101 L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p--~ItW~k~g~  177 (940)
                      |.|..++...+|.|+-...+..+.......++|.....|.+.+.+.  .+.+|+...-.|.+..+ |.-  .+.|++|+.
T Consensus       184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~  261 (466)
T PHA03270        184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGD  261 (466)
T ss_pred             EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCc
Confidence            8999999999999999998877765555556676666677666554  47799999999999864 433  699999998


Q ss_pred             eccccCce----EEeeeceEEEeecccCCCc------eEEEEEEcCCcce-eeeeeeeecCCCCeeeeCCC-eeEEecCC
Q psy11143        178 EFVEDRNH----KIHRTGSLRLYNIGPQDSG------LYRCTASNLLGED-VAEGYLTVTGAPPIFIQRPV-STTYSTGS  245 (940)
Q Consensus       178 ~i~~~~~~----~~~~~~sL~I~~v~~~DsG------~YtC~a~N~~g~~-s~s~~L~V~~~~p~~~~~p~-~~~v~~G~  245 (940)
                      ++......    ....++-..++-++.++.+      ..+|.+.=..... .....-  . ..|.....|. .+.+..|.
T Consensus       262 ~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nA--a-~~P~VY~~P~Isv~F~dG~  338 (466)
T PHA03270        262 EVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNA--T-GAPTVLPRPTIEMEFGGDE  338 (466)
T ss_pred             cccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecc--c-ccCccccCCeEEEEEeCCE
Confidence            77431111    1111222233333333322      6899986322221 111111  1 1122222222 22333443


Q ss_pred             eEEEEEEEeeeCC-CeEEEEECCeecCCCCceEE-----eecCeEEEEee---eccCCCeEEEEEEEe
Q psy11143        246 TSRITCLVEGHPL-PQMTWFHDGNSLDSDDHVTY-----EHDGFVLVLNG---VRESDAGVYNCVAQN  304 (940)
Q Consensus       246 ~v~L~C~v~G~P~-p~ItW~k~g~~l~~~~~~~~-----~~~g~sL~I~~---v~~~DsG~YtC~A~N  304 (940)
                      -   .|.+.-.|. ..+.|+-++...+.......     ...+. ..|.+   ++. ....|+|.+.-
T Consensus       339 A---VCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGl-vNlrS~~plSd-~~~eYTCrl~G  401 (466)
T PHA03270        339 A---VCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGL-ARVRSALPLSR-EHSEYTCRLVG  401 (466)
T ss_pred             E---EEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCc-eeeeccccccc-CCceEEEEEee
Confidence            3   366554443 38999987766654332111     11122 33332   223 34689999863

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.52  E-value=0.00032  Score=62.02  Aligned_cols=63  Identities=21%  Similarity=0.393  Sum_probs=42.8

Q ss_pred             EEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeec------eEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG------FVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~g------s~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      +.|.|.+.+ +|.+.|+|+++++.+...........+      +.|.+......+.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            689999976 588899999999988643211111121      224555445566779999999976653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.52  E-value=0.00036  Score=63.82  Aligned_cols=66  Identities=21%  Similarity=0.339  Sum_probs=45.8

Q ss_pred             EEecCCeEEEEEEeecc--CCCeEEEEECCE--ee---c---------CCCCeEEE--eeceEEEEcccccCCCeEEEEE
Q psy11143         56 TYSTGSTSRITCLVEGH--PLPQMTWFHDGN--SL---D---------SDDHVTYE--HDGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        56 ~V~eGesv~L~C~v~g~--P~p~V~W~kdg~--~I---~---------~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      .|.+|++|+|.|.+.+.  ....+.|||...  ..   .         ...++...  .....|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57899999999998764  456799997431  11   0         01123322  2234589999999999999999


Q ss_pred             EEeC
Q psy11143        118 AQNS  121 (940)
Q Consensus       118 a~n~  121 (940)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.51  E-value=0.00057  Score=62.93  Aligned_cols=71  Identities=27%  Similarity=0.479  Sum_probs=50.2

Q ss_pred             eEEEEEeecCcC---CCeEEEEeCCe-----ee-----------cc--CCcEEEe-----eeceEEEecCCCCCCeEEEE
Q psy11143        339 SVEIPCKPDGEP---LPRISWSKDEA-----EF-----------VE--DRNHKIH-----RTGSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       339 ~vtL~C~v~g~P---~p~i~W~k~g~-----~i-----------~~--~~~~~i~-----~~~sL~I~~v~~~D~G~YtC  392 (940)
                      +|+|.|.....+   ...|.|+|...     .+           ..  .+|..+.     .+.+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999876443   33899998321     11           00  0233332     14589999999999999999


Q ss_pred             EEEe-CCeeEEEEEEEEE
Q psy11143        393 TASN-LLGEDVAEGYLTV  409 (940)
Q Consensus       393 ~A~N-~~G~~~~s~~L~V  409 (940)
                      .+.+ +.|..++.+.|+|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 7887777888876

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.51  E-value=0.00033  Score=63.42  Aligned_cols=67  Identities=25%  Similarity=0.455  Sum_probs=48.7

Q ss_pred             ecCCeEEEEEEeecc-C-CCeEEEEECCEeecCCCC---eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         58 STGSTSRITCLVEGH-P-LPQMTWFHDGNSLDSDDH---VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        58 ~eGesv~L~C~v~g~-P-~p~V~W~kdg~~I~~~~~---~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ..|+.++|.|.+.|. | .+.|+|+++|..+.....   .....++     +.|.|......|.|.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            478999999999996 6 368999999998865432   1111222     23566666667999999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.50  E-value=0.00065  Score=60.30  Aligned_cols=63  Identities=17%  Similarity=0.402  Sum_probs=43.7

Q ss_pred             EEEEEEeec-cCCCeEEEEECCEeecCCCCeEEE-eec------eEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYE-HDG------FVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~-~~g------s~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      +.|+|.+.| +|.+.|+|+++|+.+......... .++      +.|.|......|...|+|.|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            689999987 688999999999988653321111 222      224454555667789999999986544

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.49  E-value=0.0005  Score=60.79  Aligned_cols=63  Identities=21%  Similarity=0.391  Sum_probs=42.9

Q ss_pred             EEEEEEEee-eCCCeEEEEECCeecCCCCceEEeecCe------EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGF------VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~~~~~g~------sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      +.|.|.+.+ +|.+.|+|++++..+..........++.      .|.+.....++.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            689999977 5889999999999886433111111221      24444445566779999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.49  E-value=0.0059  Score=68.80  Aligned_cols=194  Identities=19%  Similarity=0.324  Sum_probs=110.0

Q ss_pred             EEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCC-CCC--eEEEeeCCe
Q psy11143        101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP--RISWSKDEA  177 (940)
Q Consensus       101 L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p--~ItW~k~g~  177 (940)
                      |.|..++...+|.|+-...+..+.......++|....+|.+.+.+.  .+.+|+...-.|.+..+ |.-  .+.|++++.
T Consensus       200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~  277 (486)
T PHA03273        200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAK  277 (486)
T ss_pred             eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence            8999999999999998887776766666667776666777666654  47899999999999864 433  699999999


Q ss_pred             eccccCc----eEEe------eeceEEEeeccc-CCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCC-eeEEecCC
Q psy11143        178 EFVEDRN----HKIH------RTGSLRLYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV-STTYSTGS  245 (940)
Q Consensus       178 ~i~~~~~----~~~~------~~~sL~I~~v~~-~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~-~~~v~~G~  245 (940)
                      ++.....    ....      ..++|.+..... +..=..+|.+.-.....+. ..+.-. ..|.+...|. .+....|.
T Consensus       278 ~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~-~RfsAt-~~P~Vy~~P~Is~~F~~G~  355 (486)
T PHA03273        278 EVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSF-ARIAKA-GTPSVFVAPTVSVTVEDGD  355 (486)
T ss_pred             eccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcce-eecccc-ccCccccCCeEEEEEeCCE
Confidence            8862111    1111      122344433222 2233789998632222111 111111 1122222222 22333443


Q ss_pred             eEEEEEEEeeeCC--CeEEEEECCeecC--CCCceE----EeecCeEEEEee---eccCCCe--EEEEEEEe
Q psy11143        246 TSRITCLVEGHPL--PQMTWFHDGNSLD--SDDHVT----YEHDGFVLVLNG---VRESDAG--VYNCVAQN  304 (940)
Q Consensus       246 ~v~L~C~v~G~P~--p~ItW~k~g~~l~--~~~~~~----~~~~g~sL~I~~---v~~~DsG--~YtC~A~N  304 (940)
                         ..|.+.-.|.  ..+.|+.++ .++  ......    ....|. ..|..   +...| |  .|+|.+..
T Consensus       356 ---AVCtA~CVP~egV~l~W~v~D-~~p~a~~~~~~tG~C~~~Pgl-vNlrS~~pls~~d-gp~eYTCrl~G  421 (486)
T PHA03273        356 ---AVCTAKCVPSTGVFVSWSVND-HLPGVPSQDMTTGVCSSHPGL-VNMQSRRPLSEEN-GEREYSCIIEG  421 (486)
T ss_pred             ---EEEecccccCCCeeEEEEccC-CCCCCcccccccccCCCCCCc-eeeeccccccccC-CceeEEEEEee
Confidence               3477766665  589998776 222  111111    111222 45554   33443 5  89999874

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.46  E-value=0.00085  Score=62.23  Aligned_cols=81  Identities=25%  Similarity=0.371  Sum_probs=55.8

Q ss_pred             CCceeecCCCeEEEEEeec-CcCCCeEEEEeCCe-----eec--------------cCCcEEEeee-----ceEEEecCC
Q psy11143        329 PFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEA-----EFV--------------EDRNHKIHRT-----GSLRLYNIG  383 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~-----~i~--------------~~~~~~i~~~-----~sL~I~~v~  383 (940)
                      |..+.+.+|++++|.|... ......+.|++...     .+.              ...+..+..+     .+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            5567889999999999998 44556999998322     111              0123333332     269999999


Q ss_pred             CCCCeEEEEEEEeC-CeeEEEEEEEEE
Q psy11143        384 PQDSGLYRCTASNL-LGEDVAEGYLTV  409 (940)
Q Consensus       384 ~~D~G~YtC~A~N~-~G~~~~s~~L~V  409 (940)
                      .+|+|.|.|.+... .+.......|+|
T Consensus        88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   88 PSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999987 334444555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.46  E-value=0.00044  Score=62.91  Aligned_cols=71  Identities=27%  Similarity=0.405  Sum_probs=50.6

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc---CCcEEEeeeceEEEecCCCCCCeEEEEEEE
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE---DRNHKIHRTGSLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~---~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~  395 (940)
                      |.+...| ...+.+|++|+|.|.... +...+.|+|+|.....   .....-.....+.|..++.+|+|.|.|...
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            5566655 356889999999998764 5568999998864221   011111123478999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.46  E-value=0.00071  Score=59.78  Aligned_cols=75  Identities=16%  Similarity=0.273  Sum_probs=53.2

Q ss_pred             EEEecCCeEEEEEEeeccC--CCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         55 TTYSTGSTSRITCLVEGHP--LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g~P--~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      ..+..|++++|+|...+.+  .++|+|+..+.....    ....++..|.+..+...|+|+++|.+.......+....|.
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~   84 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIK   84 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEE
Confidence            3578999999999996544  459999976554321    1114556789999999999999999986644444444444


Q ss_pred             E
Q psy11143        133 I  133 (940)
Q Consensus       133 V  133 (940)
                      |
T Consensus        85 V   85 (88)
T cd07694          85 V   85 (88)
T ss_pred             E
Confidence            4

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.46  E-value=0.00077  Score=61.51  Aligned_cols=72  Identities=24%  Similarity=0.398  Sum_probs=51.2

Q ss_pred             CeEEEEEeecCcCC-CeEEEEeCCe----eec-------------cCCcEEEe----eeceEEEecCCCCCCeEEEEEE-
Q psy11143        338 SSVEIPCKPDGEPL-PRISWSKDEA----EFV-------------EDRNHKIH----RTGSLRLYNIGPQDSGLYRCTA-  394 (940)
Q Consensus       338 ~~vtL~C~v~g~P~-p~i~W~k~g~----~i~-------------~~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A-  394 (940)
                      ++|+|.|.....+. ..|.|.|...    .+.             -.+|..+.    .+++|.|.+++.+|+|.|+|.+ 
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            36899999874332 3899988421    111             01233332    2568999999999999999997 


Q ss_pred             EeCCeeEEEEEEEEE
Q psy11143        395 SNLLGEDVAEGYLTV  409 (940)
Q Consensus       395 ~N~~G~~~~s~~L~V  409 (940)
                      ..+.|+..++..|+|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            558899999998887

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.44  E-value=0.00072  Score=62.27  Aligned_cols=72  Identities=19%  Similarity=0.458  Sum_probs=48.0

Q ss_pred             eEEEEEEeeccC---CCeEEEEECCE-----eec---C----------CCCeEEEe----eceEEEEcccccCCCeEEEE
Q psy11143         62 TSRITCLVEGHP---LPQMTWFHDGN-----SLD---S----------DDHVTYEH----DGFVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        62 sv~L~C~v~g~P---~p~V~W~kdg~-----~I~---~----------~~~~~~~~----~gs~L~I~~v~~~DsG~YtC  116 (940)
                      .|+|.|.....+   ...|.|+|...     .+.   .          ..+.++..    ....|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999986543   34899998421     111   0          12344442    24458999999999999999


Q ss_pred             EEEe-CCCceEEEEEEEE
Q psy11143        117 VAQN-SEGSAESVAMIRI  133 (940)
Q Consensus       117 ~a~n-~~g~~~~~~~L~V  133 (940)
                      .+.+ +.|..+..+.|+|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9997 5666555666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.44  E-value=0.00089  Score=67.32  Aligned_cols=85  Identities=16%  Similarity=0.321  Sum_probs=59.0

Q ss_pred             CcEEEecCCeEEEEEEee-ccCCCeEEEEECCEeec----------CCCCeEEE-----eeceEEEEcccccCCCeEEEE
Q psy11143         53 VSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLD----------SDDHVTYE-----HDGFVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~~I~----------~~~~~~~~-----~~gs~L~I~~v~~~DsG~YtC  116 (940)
                      ..++|.+|+.|+|.|... +...+.|+|+|..+.+.          ..-..++.     ...+.|+|.+++.+|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            356789999999999985 55677999999743221          11111332     244668999999999999999


Q ss_pred             EEEeC-CC-ceEEEEEEEEeccc
Q psy11143        117 VAQNS-EG-SAESVAMIRINGHR  137 (940)
Q Consensus       117 ~a~n~-~g-~~~~~~~L~V~~~~  137 (940)
                      ...-- .| ..+..+-|+|....
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEchh
Confidence            98653 44 45557777776543

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.44  E-value=0.00096  Score=61.30  Aligned_cols=71  Identities=21%  Similarity=0.403  Sum_probs=50.2

Q ss_pred             eEEEEEeecCc-CCC---eEEEEeCC--e--ee--cc-----------CCcEEEe----eeceEEEecCCCCCCeEEEEE
Q psy11143        339 SVEIPCKPDGE-PLP---RISWSKDE--A--EF--VE-----------DRNHKIH----RTGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       339 ~vtL~C~v~g~-P~p---~i~W~k~g--~--~i--~~-----------~~~~~i~----~~~sL~I~~v~~~D~G~YtC~  393 (940)
                      .|+|.|..... |..   +|.|.+..  .  .+  ..           ..|..+.    .+++|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            58899997742 211   79998742  1  11  01           1233322    246899999999999999999


Q ss_pred             EEe-CCeeEEEEEEEEE
Q psy11143        394 ASN-LLGEDVAEGYLTV  409 (940)
Q Consensus       394 A~N-~~G~~~~s~~L~V  409 (940)
                      +.| +.|..+..+.|+|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            999 7898888888887

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.44  E-value=0.0004  Score=65.58  Aligned_cols=68  Identities=22%  Similarity=0.446  Sum_probs=50.7

Q ss_pred             CCceeecCCCeEEEEEeecC--cCCCeEEEEeC--Cee---ec--------------cCCcEEEee-----eceEEEecC
Q psy11143        329 PFDMRAPAGSSVEIPCKPDG--EPLPRISWSKD--EAE---FV--------------EDRNHKIHR-----TGSLRLYNI  382 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g--~P~p~i~W~k~--g~~---i~--------------~~~~~~i~~-----~~sL~I~~v  382 (940)
                      |..+.+.+|++|+|.|.+.+  .+.+.+.|+|.  +..   +.              ...++.+..     ..+|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            45567889999999999987  67789999984  211   00              124555543     236999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy11143        383 GPQDSGLYRCTASN  396 (940)
Q Consensus       383 ~~~D~G~YtC~A~N  396 (940)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999875

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.44  E-value=0.00094  Score=62.59  Aligned_cols=76  Identities=21%  Similarity=0.379  Sum_probs=51.7

Q ss_pred             CCeEEEEEEeeccC-------CCeEEEEECC-----Eee----cC----------CCCeEEEe-----eceEEEEccccc
Q psy11143         60 GSTSRITCLVEGHP-------LPQMTWFHDG-----NSL----DS----------DDHVTYEH-----DGFVLVLNGVRE  108 (940)
Q Consensus        60 Gesv~L~C~v~g~P-------~p~V~W~kdg-----~~I----~~----------~~~~~~~~-----~gs~L~I~~v~~  108 (940)
                      |++|+|.|..+-.|       .+.|.|+|..     ..+    ..          ..+..+..     ....|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999965322       3689998741     111    01          11222221     235689999999


Q ss_pred             CCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        109 SDAGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      +|+|.|.|.+.......+....|.|.+
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999766666677777754

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.44  E-value=0.00076  Score=61.64  Aligned_cols=74  Identities=16%  Similarity=0.328  Sum_probs=47.6

Q ss_pred             CCeEEEEEEeeccCC-CeEEEEECCE----eec---C----------CCCeEEE---eeceEEEEcccccCCCeEEEEEE
Q psy11143         60 GSTSRITCLVEGHPL-PQMTWFHDGN----SLD---S----------DDHVTYE---HDGFVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        60 Gesv~L~C~v~g~P~-p~V~W~kdg~----~I~---~----------~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a  118 (940)
                      |++|+|.|....... ..|.|+|...    .+.   .          ..+..+.   .....|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999999754332 3799998532    110   0          0011111   12345899999999999999998


Q ss_pred             Ee-CCCceEEEEEEEE
Q psy11143        119 QN-SEGSAESVAMIRI  133 (940)
Q Consensus       119 ~n-~~g~~~~~~~L~V  133 (940)
                      .. +.|.....+-|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            74 4555555666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.43  E-value=0.0005  Score=62.24  Aligned_cols=67  Identities=25%  Similarity=0.466  Sum_probs=48.2

Q ss_pred             ecCCeEEEEEEEeee-CC-CeEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        242 STGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      ..|+.++|.|.+.|+ |. ..|+|+++|..+.....   .....++.     .|.|......+.+.|+|.|.|....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999997 54 58999999998875542   11122222     2555555556999999999998764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.42  E-value=0.011  Score=66.71  Aligned_cols=192  Identities=14%  Similarity=0.193  Sum_probs=109.4

Q ss_pred             eEEEeecccCCCceEEEEEEcCC-cc--eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC---eEEEEE
Q psy11143        192 SLRLYNIGPQDSGLYRCTASNLL-GE--DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFH  265 (940)
Q Consensus       192 sL~I~~v~~~DsG~YtC~a~N~~-g~--~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p---~ItW~k  265 (940)
                      .|.|.+++..++|.|+=.+.+.. +.  ....+.+.+. .+|.+.+.  ...+.+|+...-.|.+..+-++   .++|++
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-r~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-KRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-cCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            49999999999999987665322 22  3344455555 44444333  3457789999999999876444   789999


Q ss_pred             CCeecCCCC---ceEEeecCeEEEEeeecc-C-CCe-----EEEEEEEeCCCCce-e--EEEEEEeeccCCeEEEcCCce
Q psy11143        266 DGNSLDSDD---HVTYEHDGFVLVLNGVRE-S-DAG-----VYNCVAQNSEGSAE-S--VAMIRINGHRAPRLVVKPFDM  332 (940)
Q Consensus       266 ~g~~l~~~~---~~~~~~~g~sL~I~~v~~-~-DsG-----~YtC~A~N~~Gs~~-~--s~~l~V~~~~~P~i~~~p~~~  332 (940)
                      |+.++....   ......+|..-.++-+.. + .++     ..+|.+.-..+... .  ++.....+..+|.+..     
T Consensus       367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm-----  441 (566)
T PHA03269        367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI-----  441 (566)
T ss_pred             CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE-----
Confidence            998887421   122234443222222222 1 233     45999875544332 2  2333334445666554     


Q ss_pred             eecCCCeEEEEEeecCcCC--CeEEEEeCCeeeccCCcEEEee-----eceEEEec---CCCCCC-eEEEEEEE
Q psy11143        333 RAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRNHKIHR-----TGSLRLYN---IGPQDS-GLYRCTAS  395 (940)
Q Consensus       333 ~v~~G~~vtL~C~v~g~P~--p~i~W~k~g~~i~~~~~~~i~~-----~~sL~I~~---v~~~D~-G~YtC~A~  395 (940)
                      .+..|.   ..|.+...|.  ..+.|.-++..... ....+..     .+-..|.+   ++.+|+ -.|+|...
T Consensus       442 ~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~-~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~  511 (566)
T PHA03269        442 EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEH-ENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLD  511 (566)
T ss_pred             EEeCCE---EEEecccccCCCceEEEEecCCCCCC-ccceeeccCCCCCCceeecccccccccCCceeEEEEEe
Confidence            333343   4577777776  38999877655322 2222222     22334444   333432 35999864

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.41  E-value=0.0011  Score=62.60  Aligned_cols=74  Identities=18%  Similarity=0.431  Sum_probs=50.3

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeC----CCeEEEEEC----Cee--c---C------CC----CceEEe----ecCeEEEE
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHD----GNS--L---D------SD----DHVTYE----HDGFVLVL  287 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P----~p~ItW~k~----g~~--l---~------~~----~~~~~~----~~g~sL~I  287 (940)
                      .+..+.+.+|++++|.|.....+    ...|.|++.    +.+  +   .      ..    .++.+.    ....+|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            45677889999999999976543    236999752    111  1   0      01    122221    12345999


Q ss_pred             eeeccCCCeEEEEEEEeCCCC
Q psy11143        288 NGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      .+++.+|+|.|+|.+.|..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999987664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.41  E-value=0.0063  Score=67.40  Aligned_cols=199  Identities=16%  Similarity=0.255  Sum_probs=111.0

Q ss_pred             CCCcccEEEECCCCCCCCeEEEEEEEcCCce--EEEEEEEEE-eCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC--e
Q psy11143          3 DRRSSTELVISGVQREHGGRYSCVAGNPAGV--YRGDLHVTV-NAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--Q   76 (940)
Q Consensus         3 ~~~s~~tL~I~~v~~sDsG~Y~C~a~n~~g~--~~~~v~l~V-~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p--~   76 (940)
                      ++.+.-.|.|.+++..|+|.|+....+....  ..+.+.+.| +.||.+.+.+..  +.+|+...-.|.+..+ |+-  .
T Consensus       202 ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~Svr  279 (490)
T PHA03271        202 KTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP--VLSGENYKASCIVRHFYPPGSVY  279 (490)
T ss_pred             cccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceE
Confidence            3456778999999999999887666654432  223333333 456767666555  6799999999999874 433  7


Q ss_pred             EEEEECCEeecCCCC--eEE---E-eeceEEEEcccccCCCe-----EEEEEEEeCCCceEE--EEEEEEecccCCeeEe
Q psy11143         77 MTWFHDGNSLDSDDH--VTY---E-HDGFVLVLNGVRESDAG-----VYNCVAQNSEGSAES--VAMIRINGHRAPRLVV  143 (940)
Q Consensus        77 V~W~kdg~~I~~~~~--~~~---~-~~gs~L~I~~v~~~DsG-----~YtC~a~n~~g~~~~--~~~L~V~~~~~P~~~~  143 (940)
                      +.|++||.++.....  ...   . .++.+ .+..+...+++     ..+|.+.=..+....  .+...-.+.+.|.+.+
T Consensus       280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S-~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv  358 (490)
T PHA03271        280 VSWRQNGNIATPRKDRDGSFWWFESGRGAT-LVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL  358 (490)
T ss_pred             EEEEeCCccccCccccceeEEEecCCCcee-EEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE
Confidence            899999988754321  111   1 11212 22333232333     789998644332222  3333333334455544


Q ss_pred             cCCceeecCCCcEEEEEEeCCCC-CCeEEEeeCCeeccccCce------EEeeeceEEEee-cccCCC---ceEEEEEEc
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNH------KIHRTGSLRLYN-IGPQDS---GLYRCTASN  212 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P-~p~ItW~k~g~~i~~~~~~------~~~~~~sL~I~~-v~~~Ds---G~YtC~a~N  212 (940)
                      .     ...|+   -.|.+.-.| ...+.|.-++...+.....      .....+...|.+ ...+|.   -.|+|.+..
T Consensus       359 ~-----FedG~---AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G  430 (490)
T PHA03271        359 A-----FKDGY---AICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG  430 (490)
T ss_pred             E-----EeCCE---EEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence            3     33343   346655433 3489998876554322110      011123345554 333433   489999863

>KOG1480|consensus

Probab=97.39  E-value=9.6e-05  Score=86.76  Aligned_cols=179  Identities=21%  Similarity=0.329  Sum_probs=111.8

Q ss_pred             CCeeEecCCceeecCCCcEEEEEEeCCCCCC----eEEEeeCCeecc--ccCce--EEeeeceEEEeecccCCCc---eE
Q psy11143        138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP----RISWSKDEAEFV--EDRNH--KIHRTGSLRLYNIGPQDSG---LY  206 (940)
Q Consensus       138 ~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p----~ItW~k~g~~i~--~~~~~--~~~~~~sL~I~~v~~~DsG---~Y  206 (940)
                      .|.++..|.+..+..|..+.|.|.+...+..    .-.|........  ..+..  .....-.+.|.....++.+   .|
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~  103 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY  103 (909)
T ss_pred             cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence            3678888889999999999999998643322    223544222111  11000  0011112334433333332   46


Q ss_pred             EE--EEEcCCccee-eeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEE-eeeCCCeEEEEECCeecCCCCceEEeecC
Q psy11143        207 RC--TASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDG  282 (940)
Q Consensus       207 tC--~a~N~~g~~s-~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v-~G~P~p~ItW~k~g~~l~~~~~~~~~~~g  282 (940)
                      .|  .+....|... ..+.+.+......+...+....|..+..+.+.|.. .+.|...+.|++++..+....+.....+.
T Consensus       104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~  183 (909)
T KOG1480|consen  104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH  183 (909)
T ss_pred             eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcC
Confidence            55  5555555321 12222222233345555666788889999999975 67888899999999988876666555555


Q ss_pred             eEEEEeeeccCCCeEEEEEEEeCCCCcee-EEEEEE
Q psy11143        283 FVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRI  317 (940)
Q Consensus       283 ~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~-s~~l~V  317 (940)
                      . +++..+...|.|+|+|+|.|..+.... .+.+.|
T Consensus       184 ~-li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~v  218 (909)
T KOG1480|consen  184 N-LIISQARLSDSGNYTCEATNIVAKRKSDPATVQV  218 (909)
T ss_pred             C-ccccchhhhhcccceeeeehhhccccccceEEEE
Confidence            5 999999999999999999999877654 333333

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.39  E-value=0.0014  Score=62.04  Aligned_cols=74  Identities=23%  Similarity=0.427  Sum_probs=50.2

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeC----CCeEEEEECCe------ec---------C-CC----CceEEee----cCeEEE
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDGN------SL---------D-SD----DHVTYEH----DGFVLV  286 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P----~p~ItW~k~g~------~l---------~-~~----~~~~~~~----~g~sL~  286 (940)
                      .|....+.+|++++|.|......    ...+.|++...      .+         . ..    .++.+..    +..+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            35667888999999999886532    24699986321      11         0 01    1222221    124699


Q ss_pred             EeeeccCCCeEEEEEEEeCCCC
Q psy11143        287 LNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       287 I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      |.+++.+|+|.|.|.+.|....
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCC
Confidence            9999999999999999987654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.39  E-value=0.0018  Score=61.15  Aligned_cols=38  Identities=26%  Similarity=0.493  Sum_probs=33.0

Q ss_pred             ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143         98 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus        98 gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      ...|.|.+++.+|+|.|.|.+.+.....+....|.|.+
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            35689999999999999999999888888888888764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.38  E-value=0.00069  Score=64.05  Aligned_cols=73  Identities=14%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECC--Ee---e---------cCCCCeEEE----eeceEEEEcccccC
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG--NS---L---------DSDDHVTYE----HDGFVLVLNGVRES  109 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg--~~---I---------~~~~~~~~~----~~gs~L~I~~v~~~  109 (940)
                      ...|..+.+.+|++|+|.|..... ....+.|||..  ..   +         ....++.+.    .....|.|.+++.+
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            455677889999999999998753 45679999832  11   1         011233332    12345899999999


Q ss_pred             CCeEEEEEEEeC
Q psy11143        110 DAGVYNCVAQNS  121 (940)
Q Consensus       110 DsG~YtC~a~n~  121 (940)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~C~~~~~   94 (116)
T cd07706          83 DSAKYFCALSTL   94 (116)
T ss_pred             HCEEEEEEEECC
Confidence            999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.38  E-value=0.0014  Score=60.18  Aligned_cols=72  Identities=24%  Similarity=0.404  Sum_probs=47.4

Q ss_pred             eEEEEEEeecc-CC---CeEEEEECCE----ee-----------cC--CCCeEEE---eeceEEEEcccccCCCeEEEEE
Q psy11143         62 TSRITCLVEGH-PL---PQMTWFHDGN----SL-----------DS--DDHVTYE---HDGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        62 sv~L~C~v~g~-P~---p~V~W~kdg~----~I-----------~~--~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      .|+|.|..... |.   .+|+|.+...    .+           ..  ..++.+.   .....|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            68999998742 21   1699987421    11           00  1222322   1124579999999999999999


Q ss_pred             EEe-CCCceEEEEEEEE
Q psy11143        118 AQN-SEGSAESVAMIRI  133 (940)
Q Consensus       118 a~n-~~g~~~~~~~L~V  133 (940)
                      +.+ +.|..+..+.|+|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            999 6776666777766

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.36  E-value=0.00092  Score=62.63  Aligned_cols=76  Identities=32%  Similarity=0.417  Sum_probs=54.5

Q ss_pred             CCCeEEEEEeecCcC-------CCeEEEEeCC-----eee----c----------cCCcEEEee------eceEEEecCC
Q psy11143        336 AGSSVEIPCKPDGEP-------LPRISWSKDE-----AEF----V----------EDRNHKIHR------TGSLRLYNIG  383 (940)
Q Consensus       336 ~G~~vtL~C~v~g~P-------~p~i~W~k~g-----~~i----~----------~~~~~~i~~------~~sL~I~~v~  383 (940)
                      .|++|+|.|...-.|       .+.|.|.|..     ..+    .          -.+|..+..      +.+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            378899999955332       3589998741     111    0          113444432      4489999999


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        384 PQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       384 ~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      .+|+|.|.|.+.......+..+.|+|.+
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999777788888888875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.35  E-value=0.0015  Score=61.52  Aligned_cols=75  Identities=25%  Similarity=0.462  Sum_probs=54.8

Q ss_pred             CCeEEEEEeecCcC-----------CCeEEEEeC-----C-----eee--c----------cCCcEEEe------eeceE
Q psy11143        337 GSSVEIPCKPDGEP-----------LPRISWSKD-----E-----AEF--V----------EDRNHKIH------RTGSL  377 (940)
Q Consensus       337 G~~vtL~C~v~g~P-----------~p~i~W~k~-----g-----~~i--~----------~~~~~~i~------~~~sL  377 (940)
                      |++++|.|...-.|           .+.|.|++-     |     ..+  .          ..+|..+.      .+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999987444           138999873     1     111  0          11233332      24589


Q ss_pred             EEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       378 ~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      .|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999999999999999998875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.30  E-value=0.0014  Score=57.87  Aligned_cols=77  Identities=17%  Similarity=0.276  Sum_probs=54.5

Q ss_pred             ceeecCCCcEEEEEEeCCCC--CCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeee
Q psy11143        147 DMRAPAGSSVEIPCKPDGEP--LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  224 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~  224 (940)
                      +..+..|++++|+|.....+  .+.|+|...+......   ......+|.+..++..|+|.++|.++...-.....+.+.
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~---~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~   84 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI---LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIK   84 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee---ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEE
Confidence            44678999999999996544  4599998866543211   112345799999999999999999986544444555554


Q ss_pred             ec
Q psy11143        225 VT  226 (940)
Q Consensus       225 V~  226 (940)
                      |.
T Consensus        85 Vl   86 (88)
T cd07694          85 VL   86 (88)
T ss_pred             EE
Confidence            43

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.30  E-value=0.002  Score=57.12  Aligned_cols=63  Identities=17%  Similarity=0.399  Sum_probs=44.0

Q ss_pred             EEEEEEEee-eCCCeEEEEECCeecCCCCc-eEEeecC------eEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDH-VTYEHDG------FVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~-~~~~~~g------~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ++|+|.+.| +|.+.|+|+++|..+..... .....++      +.|.+.....++...|+|+|.|.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            689999987 58899999999998865432 1122222      124454555667789999999987544

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.24  E-value=0.0013  Score=58.41  Aligned_cols=62  Identities=18%  Similarity=0.356  Sum_probs=42.7

Q ss_pred             EEEEEEeec-cCCCeEEEEECCEeecCCCCeEEE--eec-----eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYE--HDG-----FVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~--~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ++|.|.+.| +|.+.|+|+|+|+.+.........  .++     +.|.+......|...|+|.|.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999987 788899999999997643221111  112     23566555566778999999987544

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.24  E-value=0.002  Score=58.79  Aligned_cols=73  Identities=22%  Similarity=0.381  Sum_probs=48.6

Q ss_pred             CeEEEEEEeecc-CCCeEEEEECC----Eeec-------------CCCCeEEE---eeceEEEEcccccCCCeEEEEEEE
Q psy11143         61 STSRITCLVEGH-PLPQMTWFHDG----NSLD-------------SDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        61 esv~L~C~v~g~-P~p~V~W~kdg----~~I~-------------~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      +.|+|.|..... ...+|+|.|..    ..+.             -..+..+.   .....|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            368999998642 33489998742    1211             01123332   223457999999999999999975


Q ss_pred             -eCCCceEEEEEEEE
Q psy11143        120 -NSEGSAESVAMIRI  133 (940)
Q Consensus       120 -n~~g~~~~~~~L~V  133 (940)
                       .+.|..+.+..|+|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             56777777777776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>KOG1480|consensus

Probab=97.22  E-value=0.00015  Score=85.31  Aligned_cols=172  Identities=22%  Similarity=0.419  Sum_probs=109.1

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCC----eEEEEECCEeecCC--CCeE-EEeeceEEEEcccccCCCe---EE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP----QMTWFHDGNSLDSD--DHVT-YEHDGFVLVLNGVRESDAG---VY  114 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p----~V~W~kdg~~I~~~--~~~~-~~~~gs~L~I~~v~~~DsG---~Y  114 (940)
                      -|.|+.+|.+..+..|.++.|.|.+...+..    .=.|..+...+...  +... .......+.|.....++.|   .|
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~  103 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY  103 (909)
T ss_pred             cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence            4678899999999999999999998543322    22355433322110  0000 0000011234433333332   35


Q ss_pred             --EEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEEeee
Q psy11143        115 --NCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRT  190 (940)
Q Consensus       115 --tC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~~~~  190 (940)
                        +|.+....|...+ .+.+++.. ..-.+...+.-..|..+..+.+.|... +.|...+.|++++..+...........
T Consensus       104 ~cQc~a~~~~g~~~s~~a~vr~ay-~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d  182 (909)
T KOG1480|consen  104 WCQCVAWSDDGTVKSRKATVRIAY-LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD  182 (909)
T ss_pred             eeeeeeecCCCcchhhhHHHHHHH-HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc
Confidence              6677777774333 22222211 112344556667788899999999864 688889999999988877666666667


Q ss_pred             ceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        191 GSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       191 ~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      ..+.+..+...|.|+|+|+|.|..+..
T Consensus       183 ~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  183 HNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             CCccccchhhhhcccceeeeehhhccc
Confidence            789999999999999999999987753

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.22  E-value=0.0014  Score=59.89  Aligned_cols=68  Identities=24%  Similarity=0.398  Sum_probs=47.5

Q ss_pred             EEEecCCeEEEEEEeec-cCCCeEEEEECCEe-----e--------cCCCCeEEEe----eceEEEEcccccCCCeEEEE
Q psy11143         55 TTYSTGSTSRITCLVEG-HPLPQMTWFHDGNS-----L--------DSDDHVTYEH----DGFVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~-----I--------~~~~~~~~~~----~gs~L~I~~v~~~DsG~YtC  116 (940)
                      +.+.+|++|+|.|.... .+...+.|+|....     +        ....+..+..    ....|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46789999999999865 34567899986421     1        0112333321    22458999999999999999


Q ss_pred             EEEeCC
Q psy11143        117 VAQNSE  122 (940)
Q Consensus       117 ~a~n~~  122 (940)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            997654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.22  E-value=0.0011  Score=60.68  Aligned_cols=65  Identities=15%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             eecCCCeEEEEEeecCc--CCCeEEEEeCCe---e--ec---------cCCcEEEeee---ceEEEecCCCCCCeEEEEE
Q psy11143        333 RAPAGSSVEIPCKPDGE--PLPRISWSKDEA---E--FV---------EDRNHKIHRT---GSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       333 ~v~~G~~vtL~C~v~g~--P~p~i~W~k~g~---~--i~---------~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~  393 (940)
                      .+.+|++|+|.|.+.+.  ....+.|++...   +  +.         ...++.....   .+|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998765  456899987421   1  11         0234544332   3699999999999999999


Q ss_pred             EEeC
Q psy11143        394 ASNL  397 (940)
Q Consensus       394 A~N~  397 (940)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8763

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.21  E-value=0.002  Score=64.79  Aligned_cols=82  Identities=20%  Similarity=0.367  Sum_probs=60.2

Q ss_pred             eeecCCCeEEEEEeec-CcCCCeEEEEeCCeee----------ccC--CcEEEe----eeceEEEecCCCCCCeEEEEEE
Q psy11143        332 MRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEF----------VED--RNHKIH----RTGSLRLYNIGPQDSGLYRCTA  394 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i----------~~~--~~~~i~----~~~sL~I~~v~~~D~G~YtC~A  394 (940)
                      +.+.+|++|+|.|... +...+.+.|+|....+          .++  .|..+.    .+.+|+|.+++.+|+|.|+|..
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            5788999999999984 5567799999864322          111  233321    2458999999999999999987


Q ss_pred             Ee-CCe-eEEEEEEEEEecCC
Q psy11143        395 SN-LLG-EDVAEGYLTVTGEN  413 (940)
Q Consensus       395 ~N-~~G-~~~~s~~L~V~~~~  413 (940)
                      .- +.| ..+..+.|.|..+.
T Consensus       105 ~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EecCCCCCceeEEEEEEEchh
Confidence            54 456 77778889998764

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.19  E-value=0.0016  Score=57.88  Aligned_cols=63  Identities=19%  Similarity=0.363  Sum_probs=43.3

Q ss_pred             EEEEEEEee-eCCCeEEEEECCeecCCCCceEEe--ecC-----eEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYE--HDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~~~--~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ++|.|.+.| +|...|+|+|+|..+.........  .++     ++|.+..-..++...|+|+|.|.....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~   72 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA   72 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence            689999987 677899999999998643322211  112     125555445666779999999886543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.19  E-value=0.0027  Score=60.35  Aligned_cols=71  Identities=14%  Similarity=0.216  Sum_probs=48.0

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC------CCeEEEEECCEe------ec--C---------CCCeEEE----eeceEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP------LPQMTWFHDGNS------LD--S---------DDHVTYE----HDGFVLVL  103 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P------~p~V~W~kdg~~------I~--~---------~~~~~~~----~~gs~L~I  103 (940)
                      .|..+.+.+|+.|+|.|......      ...+.|||....      +.  .         ..++.+.    .....|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            46677899999999999875321      246899985321      10  0         0122221    12245899


Q ss_pred             cccccCCCeEEEEEEEeC
Q psy11143        104 NGVRESDAGVYNCVAQNS  121 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~  121 (940)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.18  E-value=0.0022  Score=58.64  Aligned_cols=73  Identities=25%  Similarity=0.448  Sum_probs=50.4

Q ss_pred             CCeEEEEEeecCcCCC-eEEEEeCCe----eec---c----------CCcEEEe----eeceEEEecCCCCCCeEEEEEE
Q psy11143        337 GSSVEIPCKPDGEPLP-RISWSKDEA----EFV---E----------DRNHKIH----RTGSLRLYNIGPQDSGLYRCTA  394 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p-~i~W~k~g~----~i~---~----------~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A  394 (940)
                      |++|+|.|........ .|.|+|...    .+.   .          ..+..+.    .+.+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            7899999986644332 799998432    110   0          1122221    2447999999999999999997


Q ss_pred             E-eCCeeEEEEEEEEE
Q psy11143        395 S-NLLGEDVAEGYLTV  409 (940)
Q Consensus       395 ~-N~~G~~~~s~~L~V  409 (940)
                      . .+.|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 47788777888877

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.17  E-value=0.0014  Score=61.02  Aligned_cols=65  Identities=18%  Similarity=0.444  Sum_probs=44.4

Q ss_pred             EEecCCeEEEEEEeecc-CCCeEEEEECCEe---------e--cC-----------CCCeEEE--e--eceEEEEccccc
Q psy11143         56 TYSTGSTSRITCLVEGH-PLPQMTWFHDGNS---------L--DS-----------DDHVTYE--H--DGFVLVLNGVRE  108 (940)
Q Consensus        56 ~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~---------I--~~-----------~~~~~~~--~--~gs~L~I~~v~~  108 (940)
                      .|.+|++|+|.|.+.+. ....+.|||....         +  ..           ..++++.  .  ....|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            57899999999998653 3457999984221         0  00           1123222  1  124589999999


Q ss_pred             CCCeEEEEEEEe
Q psy11143        109 SDAGVYNCVAQN  120 (940)
Q Consensus       109 ~DsG~YtC~a~n  120 (940)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd00096 Ig Immunoglobulin domain

Probab=97.14  E-value=0.0019  Score=52.81  Aligned_cols=60  Identities=35%  Similarity=0.661  Sum_probs=45.2

Q ss_pred             EEEEEEeeccCCCeEEEEECCEeecCCCCe------EEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHV------TYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~------~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      +.|.|.+.+.+...+.|++++.........      ........|.|.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999988778899999998776543211      111333457999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00096 Ig Immunoglobulin domain

Probab=97.13  E-value=0.0019  Score=52.74  Aligned_cols=59  Identities=31%  Similarity=0.572  Sum_probs=45.7

Q ss_pred             EEEEEeecCcCCCeEEEEeCCeeeccCC-------cEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        340 VEIPCKPDGEPLPRISWSKDEAEFVEDR-------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~-------~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      +.|.|.+.+.+.+.+.|++++.......       .........|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            4789999987778999999887654322       1222345579999999999999999999876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.11  E-value=0.0025  Score=60.19  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=50.8

Q ss_pred             EcCCceeecCCCeEEEEEeecCc-CCCeEEEEeCC--ee---e---------ccCCcEEEee-----eceEEEecCCCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDE--AE---F---------VEDRNHKIHR-----TGSLRLYNIGPQD  386 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~g--~~---i---------~~~~~~~i~~-----~~sL~I~~v~~~D  386 (940)
                      ..|..+.+.+|++|+|.|..... ....+.|+|..  ..   +         ....++.+..     ..+|.|.++..+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            34556788999999999998754 44589999732  11   1         1124565542     2379999999999


Q ss_pred             CeEEEEEEEe
Q psy11143        387 SGLYRCTASN  396 (940)
Q Consensus       387 ~G~YtC~A~N  396 (940)
                      +|.|.|.+..
T Consensus        84 sg~Y~C~~~~   93 (116)
T cd07706          84 SAKYFCALST   93 (116)
T ss_pred             CEEEEEEEEC
Confidence            9999999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.05  E-value=0.0042  Score=56.30  Aligned_cols=65  Identities=25%  Similarity=0.436  Sum_probs=41.1

Q ss_pred             CCeEEEEEEeecc-CCC-eEEEEECCEeecCCC---CeEEEeeceE--EEEcccccCCCeEEEEEEEeCCCc
Q psy11143         60 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        60 Gesv~L~C~v~g~-P~p-~V~W~kdg~~I~~~~---~~~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      |+.++|.|.+.|. |.. .|+|+++|+.+....   ......++..  .....+...+.+.|+|.+.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            7889999999994 554 899999996432211   1121223322  112234455889999999887543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.01  E-value=0.0059  Score=57.36  Aligned_cols=71  Identities=24%  Similarity=0.397  Sum_probs=45.4

Q ss_pred             cEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeEE-Eeec------eEEEEcccccCCCe-EEEEEEEeCCC
Q psy11143         54 STTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVTY-EHDG------FVLVLNGVRESDAG-VYNCVAQNSEG  123 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~~-~~~g------s~L~I~~v~~~DsG-~YtC~a~n~~g  123 (940)
                      ......|+.++|.|.+.| +|. .+|+|+|||+.+........ ..++      +.|.+.. ...|.| .|+|.+.+...
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence            444567889999999988 564 59999999999864221111 1222      1234443 344444 59999998764


Q ss_pred             ce
Q psy11143        124 SA  125 (940)
Q Consensus       124 ~~  125 (940)
                      ..
T Consensus        94 ~~   95 (111)
T cd05772          94 QA   95 (111)
T ss_pred             CC
Confidence            43

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.98  E-value=0.6  Score=51.97  Aligned_cols=254  Identities=14%  Similarity=0.227  Sum_probs=133.3

Q ss_pred             CcccEEEECCCCCCCCeEEEEEEE-cCCceEEEEEEEEEeCCCeEEeCCCcEEEecCC-eEEEEEEeec---cCCCeEEE
Q psy11143          5 RSSTELVISGVQREHGGRYSCVAG-NPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGS-TSRITCLVEG---HPLPQMTW   79 (940)
Q Consensus         5 ~s~~tL~I~~v~~sDsG~Y~C~a~-n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGe-sv~L~C~v~g---~P~p~V~W   79 (940)
                      .-..++.+.|+..+|.|.|+|... +..-..+.++.+.|.  |.+...    ....|+ .+.+-|..+.   ...+++.-
T Consensus        78 dkeYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm--PKId~t----~~~~~dk~~~y~CNrtrtm~dd~vKv~~  151 (500)
T PHA02914         78 DKEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA--PKIDTT----FLEFNDKHTCICCKIDKPMNQDALKVFF  151 (500)
T ss_pred             cceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc--cceeee----eeecCCCcEEEEEecCcccccCceeEEE
Confidence            456789999999999999999987 444456666666654  443311    112333 4445577643   12335555


Q ss_pred             EECCEeecCCCC--eEEEeeceE--E-EEcccccCC-CeEEEEEEEeCCCceEEEE------EEEEe-------------
Q psy11143         80 FHDGNSLDSDDH--VTYEHDGFV--L-VLNGVRESD-AGVYNCVAQNSEGSAESVA------MIRIN-------------  134 (940)
Q Consensus        80 ~kdg~~I~~~~~--~~~~~~gs~--L-~I~~v~~~D-sG~YtC~a~n~~g~~~~~~------~L~V~-------------  134 (940)
                      .-.|..+.....  -.+..+.+.  + ...+-...| +-.-+|.++...-..+..+      .+.+.             
T Consensus       152 iaGGV~v~~~~~g~~~fnsd~s~~~v~~~Adksy~D~Trev~C~VSY~G~~~e~~iSy~~~~~vn~s~i~~~~~p~n~~~  231 (500)
T PHA02914        152 VAGGVNVDGNFLGKKDFNNDPSNRTVKLCADKSHDDTAREALCGVEYFGALKELNISYDGTNAVNISEILSKVCPENVIN  231 (500)
T ss_pred             EeccEEEcCeeeccccccCCCceeEEEEecCCCCccchhheEEEEEEccceeEEEeeecCccceeHHHhhhhcCCccccc
Confidence            555555543111  111111111  1 111111122 3345666654322211100      01100             


Q ss_pred             ----c--------------ccCC--------eeE--e-cCCceeecCCCcEEEEEEeC--CC-CCCeEEEeeCCeeccc-
Q psy11143        135 ----G--------------HRAP--------RLV--V-KPFDMRAPAGSSVEIPCKPD--GE-PLPRISWSKDEAEFVE-  181 (940)
Q Consensus       135 ----~--------------~~~P--------~~~--~-~p~~~~v~~Ge~vtL~C~v~--g~-P~p~ItW~k~g~~i~~-  181 (940)
                          +              ...+        .++  . +...+.+..|.+|.|.|..+  |+ ....++|+.-|-++.+ 
T Consensus       232 ~~~~~~~~~~~s~~~~~~ee~~~y~~~~~~~~v~y~kk~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~  311 (500)
T PHA02914        232 SKVCGDNGSKDSELLEDEEEEDDYEESGDYSEVTYDKKKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPL  311 (500)
T ss_pred             ccccccCCcccchhhcchhhcCChhhcCCcceEEecccccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccce
Confidence                0              0000        011  1 12345677799999999876  33 3447899765433321 


Q ss_pred             ----------------cCceEEe---------eeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCC
Q psy11143        182 ----------------DRNHKIH---------RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP  236 (940)
Q Consensus       182 ----------------~~~~~~~---------~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p  236 (940)
                                      ...+.+.         ..++|+|.++..+..|-|.|+|....-......-|.|.. ...+.   
T Consensus       312 ~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d-~V~f~---  387 (500)
T PHA02914        312 IGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVAD-HVFFK---  387 (500)
T ss_pred             eEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEecc-EEEEE---
Confidence                            1122221         245799999999999999999987655555555555541 11111   


Q ss_pred             CeeEEecCC-eEEEEEEEeee--CCCeEEEEECCeecC
Q psy11143        237 VSTTYSTGS-TSRITCLVEGH--PLPQMTWFHDGNSLD  271 (940)
Q Consensus       237 ~~~~v~~G~-~v~L~C~v~G~--P~p~ItW~k~g~~l~  271 (940)
                         -..+|. .....|-+-.+  .+++|.|..+|....
T Consensus       388 ---W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        388 ---WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             ---EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence               011333 34678987654  345799999887553

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.95  E-value=0.0023  Score=58.93  Aligned_cols=73  Identities=22%  Similarity=0.402  Sum_probs=47.3

Q ss_pred             CCcEEEecCCeEEEEEEeec-cC-CCeEEEEECCEeecCCC---CeEEEeece-----EEEEcccccCCCeEEEEEEEeC
Q psy11143         52 PVSTTYSTGSTSRITCLVEG-HP-LPQMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g-~P-~p~V~W~kdg~~I~~~~---~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      |.......++.++|.|.+.| +| ...|+|++||+.+....   ......+++     .|.+..-...+...|+|.+.+.
T Consensus         9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~   88 (100)
T cd07699           9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE   88 (100)
T ss_pred             CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence            33444556788999999998 55 45899999999885321   111112332     2455544455578999999987


Q ss_pred             CCc
Q psy11143        122 EGS  124 (940)
Q Consensus       122 ~g~  124 (940)
                      ...
T Consensus        89 ~l~   91 (100)
T cd07699          89 GLS   91 (100)
T ss_pred             CCC
Confidence            543

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.94  E-value=0.0031  Score=57.56  Aligned_cols=67  Identities=19%  Similarity=0.284  Sum_probs=48.1

Q ss_pred             eeecCCCeEEEEEeecC-cCCCeEEEEeCCe-----ee--------ccCCcEEEee-----eceEEEecCCCCCCeEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDG-EPLPRISWSKDEA-----EF--------VEDRNHKIHR-----TGSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~-----~i--------~~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC  392 (940)
                      +.+.+|++|+|.|.... .+...+.|+|...     .+        ....++.+..     ..+|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35778999999999875 3456899998542     11        1123455432     2379999999999999999


Q ss_pred             EEEeCC
Q psy11143        393 TASNLL  398 (940)
Q Consensus       393 ~A~N~~  398 (940)
                      .+.+..
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            998753

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.91  E-value=0.0044  Score=55.40  Aligned_cols=66  Identities=27%  Similarity=0.516  Sum_probs=43.0

Q ss_pred             CCeEEEEEEee-ccCCCeEEEEECCEeecCCCCeEE-E-ee-----ceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         60 GSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTY-E-HD-----GFVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        60 Gesv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~~-~-~~-----gs~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      |+.+.|+|.+. ++|++.|+|+.++..+........ . ..     .+.|.+..-...+...++|.|.+.....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            78999999875 589999999999987721111111 1 11     1335665545556778899999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.86  E-value=0.0097  Score=55.90  Aligned_cols=72  Identities=25%  Similarity=0.392  Sum_probs=45.5

Q ss_pred             CeeEEecCCeEEEEEEEeee-CC-CeEEEEECCeecCCCCce-EEeecC-e-----EEEEeeeccCCCe-EEEEEEEeCC
Q psy11143        237 VSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDHV-TYEHDG-F-----VLVLNGVRESDAG-VYNCVAQNSE  306 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~~~-~~~~~g-~-----sL~I~~v~~~DsG-~YtC~A~N~~  306 (940)
                      .......|+.++|.|.+.|+ |. ..++|++||..+...... ....++ +     .|.+.. ...|.| .|+|.+.+..
T Consensus        14 ~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          14 PSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             chhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            34445578889999999984 54 489999999998643221 112232 1     133343 334444 5999999976


Q ss_pred             CCc
Q psy11143        307 GSA  309 (940)
Q Consensus       307 Gs~  309 (940)
                      ...
T Consensus        93 l~~   95 (111)
T cd05772          93 LQA   95 (111)
T ss_pred             CCC
Confidence            444

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.80  E-value=0.0029  Score=58.65  Aligned_cols=65  Identities=18%  Similarity=0.441  Sum_probs=44.2

Q ss_pred             EEecCCeEEEEEEeeccCCCeEEEEECCE----e---e---cCCC----------CeEEE----eeceEEEEcccccCCC
Q psy11143         56 TYSTGSTSRITCLVEGHPLPQMTWFHDGN----S---L---DSDD----------HVTYE----HDGFVLVLNGVRESDA  111 (940)
Q Consensus        56 ~V~eGesv~L~C~v~g~P~p~V~W~kdg~----~---I---~~~~----------~~~~~----~~gs~L~I~~v~~~Ds  111 (940)
                      .+.+|++|+|.|.+.......+.|||...    .   |   ....          ..++.    .....|.|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            36799999999998655455799998431    1   1   1100          12222    2234589999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |+|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999863

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.78  E-value=0.0066  Score=55.23  Aligned_cols=73  Identities=18%  Similarity=0.288  Sum_probs=45.4

Q ss_pred             CCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC---CeEEEeec-----eEEEEcccccCCCeEEEEEEEeC
Q psy11143         52 PVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD---HVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~---~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      |.......++.++|.|.+.| +|. ..|+|+++|..+....   ......++     +.|.+..-...+...|+|.|.+.
T Consensus         6 ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~   85 (94)
T cd05847           6 SSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ   85 (94)
T ss_pred             cChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence            33333335677999999998 554 5899999999863221   11111222     22445544445677999999987


Q ss_pred             CCc
Q psy11143        122 EGS  124 (940)
Q Consensus       122 ~g~  124 (940)
                      ...
T Consensus        86 ~~~   88 (94)
T cd05847          86 GTT   88 (94)
T ss_pred             Cee
Confidence            544

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.75  E-value=0.012  Score=53.51  Aligned_cols=67  Identities=24%  Similarity=0.376  Sum_probs=42.8

Q ss_pred             ecCCeEEEEEEeec-cCCC-eEEEEECCEeecCCC---CeEEEeeceE--EEEcccccCCCeEEEEEEEeCCCc
Q psy11143         58 STGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~---~~~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ..|+.++|.|.+.| +|.. .++|++||+.+....   ......+++.  .....+...+...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            46899999999998 5544 889999999876531   1111122221  111123345677999999987554

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.75  E-value=0.0056  Score=56.61  Aligned_cols=72  Identities=25%  Similarity=0.433  Sum_probs=44.7

Q ss_pred             CcEEEecCCeEEEEEEeec-cCCC-eEEEEECCEeecCCCCe----EEEe--ece-----EEEEcccccCCCeEEEEEEE
Q psy11143         53 VSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHV----TYEH--DGF-----VLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~~~----~~~~--~gs-----~L~I~~v~~~DsG~YtC~a~  119 (940)
                      ....+..|..++|.|.+.| +|.. .|+|+|||+++......    ....  +++     .|.|..-...+...|+|.|.
T Consensus         9 ~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~   88 (102)
T cd05768           9 PSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVG   88 (102)
T ss_pred             ChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeE
Confidence            3334456789999999999 4543 78999999987532211    1111  132     24454333445678999998


Q ss_pred             eCCCc
Q psy11143        120 NSEGS  124 (940)
Q Consensus       120 n~~g~  124 (940)
                      +....
T Consensus        89 H~~l~   93 (102)
T cd05768          89 HEALP   93 (102)
T ss_pred             eCCCC
Confidence            86543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.73  E-value=0.0072  Score=54.01  Aligned_cols=64  Identities=23%  Similarity=0.434  Sum_probs=42.3

Q ss_pred             CCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEE--------EeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        337 GSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHK--------IHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       337 G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~--------i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      |+.+.|.|.+. ++|.|.|+|+.++..+.......        ....++|.+..-...+...++|.|.|..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            78999999654 78999999999987761110000        111235666655555667799999997543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.72  E-value=0.012  Score=53.63  Aligned_cols=70  Identities=20%  Similarity=0.287  Sum_probs=45.9

Q ss_pred             CeEEEEEeecCc-CCCeEEEEeCCe----ee-----------cc--CCcEEEe----eeceEEEecCCCCCCeEEEEEEE
Q psy11143        338 SSVEIPCKPDGE-PLPRISWSKDEA----EF-----------VE--DRNHKIH----RTGSLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       338 ~~vtL~C~v~g~-P~p~i~W~k~g~----~i-----------~~--~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A~  395 (940)
                      ++++|.|..... ...++.|.|...    .+           ..  .+|..+.    .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            468899987532 234888988421    11           11  1233332    24689999999999999999997


Q ss_pred             e-CCeeEEEEEEE
Q psy11143        396 N-LLGEDVAEGYL  407 (940)
Q Consensus       396 N-~~G~~~~s~~L  407 (940)
                      . +.|..++.+.|
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            6 46666655444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.71  E-value=0.0061  Score=57.81  Aligned_cols=71  Identities=18%  Similarity=0.375  Sum_probs=48.2

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--E-e--e---cC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--N-S--L---DS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~-~--I---~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .+|....+.+|++|+|.|...+..  ...+.|||..  + +  |   ..           ..++....+    ...|.|.
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            356778899999999999976432  4569999732  1 1  1   00           112222211    1358999


Q ss_pred             ccccCCCeEEEEEEEe
Q psy11143        105 GVRESDAGVYNCVAQN  120 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n  120 (940)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.70  E-value=0.013  Score=53.31  Aligned_cols=63  Identities=17%  Similarity=0.423  Sum_probs=41.2

Q ss_pred             ecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC---CeEEEeece-----EEEEcccccCCCeEEEEEEEeCCC
Q psy11143         58 STGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~---~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      ..|+.++|.|.+.| +|. ..++|.+||..+....   ......+++     .|.+   ...+...|+|.+.+...
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~l   85 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWGL   85 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence            34677899999999 554 4889999999875421   111122332     2333   34566799999988643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.69  E-value=0.1  Score=58.19  Aligned_cols=195  Identities=16%  Similarity=0.225  Sum_probs=100.5

Q ss_pred             EEEEcccccCCCeEEEEEEEeCCCceEE--EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCC-CCC--eEEEee
Q psy11143        100 VLVLNGVRESDAGVYNCVAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP--RISWSK  174 (940)
Q Consensus       100 ~L~I~~v~~~DsG~YtC~a~n~~g~~~~--~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p--~ItW~k  174 (940)
                      .|.|.++...|+|.|+-...+.....-.  ...+.+. ..+|.+.+.+.  .+.+|+...-.|.+..+ |+-  .++|++
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~-~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC-QRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEE-ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            3799999999999775555544333322  2223332 23444555543  47799999999999874 433  699999


Q ss_pred             CCeeccccCceEE-----------eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCe-eEEe
Q psy11143        175 DEAEFVEDRNHKI-----------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS-TTYS  242 (940)
Q Consensus       175 ~g~~i~~~~~~~~-----------~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~-~~v~  242 (940)
                      +|...........           ...++|.+.+...+..=..+|.+.=..+....+.  .-. ..|.....|.- +...
T Consensus       285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAa-atP~VY~~P~ISv~Fe  361 (490)
T PHA03271        285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NAT-AIPTVYHHPRISLAFK  361 (490)
T ss_pred             CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecc-cCCccccCCeEEEEEe
Confidence            9887643221110           1112343433322223379999864333222211  111 22222222322 2344


Q ss_pred             cCCeEEEEEEEeeeC-CCeEEEEECCeecCCCCc------eEEeecCeEEEEee-eccCC---CeEEEEEEEe
Q psy11143        243 TGSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDH------VTYEHDGFVLVLNG-VRESD---AGVYNCVAQN  304 (940)
Q Consensus       243 ~G~~v~L~C~v~G~P-~p~ItW~k~g~~l~~~~~------~~~~~~g~sL~I~~-v~~~D---sG~YtC~A~N  304 (940)
                      .|..   .|.+.--| ...+.|+-++...+....      ......|. ..|.+ ...+|   --.|+|.+..
T Consensus       362 dG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGl-VNLrS~lPlSd~dgpveYTCrL~G  430 (490)
T PHA03271        362 DGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRH-RNLISRIPVQDNWQKTKYTCRLIG  430 (490)
T ss_pred             CCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCc-eeeeccCCchhcCCceeEEEEEee
Confidence            4443   35554443 348999987765433211      11111222 44444 23333   2479999874

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.68  E-value=0.019  Score=51.95  Aligned_cols=65  Identities=25%  Similarity=0.436  Sum_probs=41.7

Q ss_pred             CCeEEEEEEEeee-CCC-eEEEEECCeecCCCC---ceEEeecCeE--EEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       244 G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~---~~~~~~~g~s--L~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      ++.++|.|.+.|+ |.. .++|+++|..+....   ......++.-  .....+...+...|+|.+.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            6789999999995 554 899999996433221   1222223321  122344456888999999887543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=96.67  E-value=0.011  Score=51.23  Aligned_cols=62  Identities=23%  Similarity=0.454  Sum_probs=40.6

Q ss_pred             eEEEEEEeecc-CC-CeEEEEECCEeecCCCC---eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         62 TSRITCLVEGH-PL-PQMTWFHDGNSLDSDDH---VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        62 sv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~---~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      .++|.|.+.|. |. ..|+|+|||+++.....   .....++     +.|.|......+...|+|.|.+...
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence            37899999984 55 59999999987432211   1111222     2355655566778899999987643

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.64  E-value=0.013  Score=53.58  Aligned_cols=69  Identities=23%  Similarity=0.467  Sum_probs=43.6

Q ss_pred             CeEEEEEEeec-cCCCeEEEEECCE----eec-----------C--CCCeEEE---eeceEEEEcccccCCCeEEEEEEE
Q psy11143         61 STSRITCLVEG-HPLPQMTWFHDGN----SLD-----------S--DDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        61 esv~L~C~v~g-~P~p~V~W~kdg~----~I~-----------~--~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      +.++|.|.... ....+|+|.|...    .+.           .  ..++.+.   .....|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46899999753 2345889987432    111           0  1223322   123567999999999999999996


Q ss_pred             eC-CCceEEEE
Q psy11143        120 NS-EGSAESVA  129 (940)
Q Consensus       120 n~-~g~~~~~~  129 (940)
                      .. .|..+...
T Consensus        81 t~P~g~~~~~i   91 (96)
T cd05889          81 TYPQGSWEKVI   91 (96)
T ss_pred             eCCCCCeEEEE
Confidence            54 55544443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.60  E-value=0.0079  Score=55.39  Aligned_cols=70  Identities=20%  Similarity=0.390  Sum_probs=44.6

Q ss_pred             EEecCCeEEEEEEEee-eC-CCeEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        240 TYSTGSTSRITCLVEG-HP-LPQMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       240 ~v~~G~~v~L~C~v~G-~P-~p~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ....++.++|.|.+.| +| ...|+|++||..+..+..   .....+++     .|.+..-...+...|+|.+.+.....
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~~   92 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLSS   92 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCCC
Confidence            3445778999999999 45 348999999999853311   11122332     14444333445678999999876433

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.59  E-value=0.015  Score=52.74  Aligned_cols=65  Identities=17%  Similarity=0.400  Sum_probs=42.4

Q ss_pred             ecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCC---eEEEeeceE--EEEcccccCCCeEEEEEEEeCCC
Q psy11143         58 STGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDH---VTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~---~~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      ..|...+|.|.+.| +|. ..|+|+|||+.+. ...   .....+++.  .....+...+...|+|.+.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM   84 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence            45777899999999 453 4889999999876 321   111133332  11112456788899999988643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.46  E-value=0.0087  Score=55.72  Aligned_cols=64  Identities=22%  Similarity=0.455  Sum_probs=44.7

Q ss_pred             eecCCCeEEEEEeecCcC-CCeEEEEeCCee--------e---c-----------cCCcEEEee-----eceEEEecCCC
Q psy11143        333 RAPAGSSVEIPCKPDGEP-LPRISWSKDEAE--------F---V-----------EDRNHKIHR-----TGSLRLYNIGP  384 (940)
Q Consensus       333 ~v~~G~~vtL~C~v~g~P-~p~i~W~k~g~~--------i---~-----------~~~~~~i~~-----~~sL~I~~v~~  384 (940)
                      .+.+|++|+|.|.+.+.. ...+.|++....        +   .           ...++.+..     ...|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            478899999999987643 458999974211        0   0           023444321     12599999999


Q ss_pred             CCCeEEEEEEEe
Q psy11143        385 QDSGLYRCTASN  396 (940)
Q Consensus       385 ~D~G~YtC~A~N  396 (940)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>KOG0613|consensus

Probab=96.46  E-value=0.012  Score=73.84  Aligned_cols=208  Identities=16%  Similarity=0.121  Sum_probs=124.5

Q ss_pred             EEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecc---cC--------------CeeEecCCceeecCCCcEEEEEEe
Q psy11143        100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH---RA--------------PRLVVKPFDMRAPAGSSVEIPCKP  162 (940)
Q Consensus       100 ~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~---~~--------------P~~~~~p~~~~v~~Ge~vtL~C~v  162 (940)
                      ...|.+-...+.+.|+|...+..+.....+...+...   ..              +........+.+..+..+++.|..
T Consensus       279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~  358 (1205)
T KOG0613|consen  279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL  358 (1205)
T ss_pred             cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence            3566666777888899998888777666433332211   00              111112234456667789999999


Q ss_pred             CCCCCCe-EEEeeCCeeccccCceEE-----eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCC----CCee
Q psy11143        163 DGEPLPR-ISWSKDEAEFVEDRNHKI-----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA----PPIF  232 (940)
Q Consensus       163 ~g~P~p~-ItW~k~g~~i~~~~~~~~-----~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~----~p~~  232 (940)
                      .+.+.+. +.|++++...........     .....+.|..+...+.+.|.|.|.|..|.........|...    .+..
T Consensus       359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~  438 (1205)
T KOG0613|consen  359 SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPK  438 (1205)
T ss_pred             cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcc
Confidence            9988885 999987655543321111     12235788888999999999999999887655544445432    2222


Q ss_pred             eeCCCeeEEecC--CeEEEEEEEeeeCCC--eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        233 IQRPVSTTYSTG--STSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       233 ~~~p~~~~v~~G--~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .......+...+  +.+.+.|.+.+.+.+  .++|++++..............-.+|.+.-....+.|.|.-......+
T Consensus       439 ~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~  517 (1205)
T KOG0613|consen  439 FKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG  517 (1205)
T ss_pred             ccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence            223333333444  788899998887755  556666655443221111111223367777778888888655444333

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.43  E-value=0.011  Score=54.08  Aligned_cols=74  Identities=14%  Similarity=0.252  Sum_probs=44.5

Q ss_pred             CCCcEEEecCCeEEEEEEeecc--CC-CeEEEEECCEeecC-C-CCeEEEeeceE-----EEEcccccCCCeEEEEEEEe
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGH--PL-PQMTWFHDGNSLDS-D-DHVTYEHDGFV-----LVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~--P~-p~V~W~kdg~~I~~-~-~~~~~~~~gs~-----L~I~~v~~~DsG~YtC~a~n  120 (940)
                      .|....+..|+.++|.|.+.|.  |. ..|+|+|+|..... . .......+++.     |.+..-...+.-.|+|.|.+
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3444556778999999999987  43 38899998753321 1 11111123322     34443333345689999998


Q ss_pred             CCCc
Q psy11143        121 SEGS  124 (940)
Q Consensus       121 ~~g~  124 (940)
                      ....
T Consensus        85 ~~l~   88 (96)
T cd07696          85 PDLP   88 (96)
T ss_pred             CCCC
Confidence            7543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.40  E-value=0.009  Score=55.36  Aligned_cols=64  Identities=23%  Similarity=0.398  Sum_probs=44.5

Q ss_pred             eecCCCeEEEEEeecCcCCCeEEEEeCCe----e---ec---c------------CCcEEEee---eceEEEecCCCCCC
Q psy11143        333 RAPAGSSVEIPCKPDGEPLPRISWSKDEA----E---FV---E------------DRNHKIHR---TGSLRLYNIGPQDS  387 (940)
Q Consensus       333 ~v~~G~~vtL~C~v~g~P~p~i~W~k~g~----~---i~---~------------~~~~~i~~---~~sL~I~~v~~~D~  387 (940)
                      .+.+|++|+|.|.+...-...+.|+|...    .   +.   .            ..++.+..   ..+|.|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            36789999999998755455799997431    1   10   0            12333322   23699999999999


Q ss_pred             eEEEEEEEe
Q psy11143        388 GLYRCTASN  396 (940)
Q Consensus       388 G~YtC~A~N  396 (940)
                      |+|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.37  E-value=0.041  Score=50.04  Aligned_cols=62  Identities=18%  Similarity=0.427  Sum_probs=40.7

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .++..+|.|.+.|+ |.. .++|.+||..+..+..   .....+++     .|.+   ...+...|+|.+.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~l   85 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWGL   85 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence            35668999999994 543 8899999998764321   12222332     1333   34566699999988753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.35  E-value=0.017  Score=54.54  Aligned_cols=77  Identities=14%  Similarity=0.329  Sum_probs=48.9

Q ss_pred             CCCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCC---eEEEee-c-----eEEEEcccccCC-CeEEEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDH---VTYEHD-G-----FVLVLNGVRESD-AGVYNCVA  118 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~---~~~~~~-g-----s~L~I~~v~~~D-sG~YtC~a  118 (940)
                      .|....+.+++.++|.|.+.| +|. .+|+|+|||..+.....   .....+ +     +.|.|......+ ...|+|.+
T Consensus         9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V   88 (115)
T cd05769           9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIV   88 (115)
T ss_pred             CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEE
Confidence            344444556788999999998 565 48999999988764321   111111 2     225555444434 56899999


Q ss_pred             EeCCCceEE
Q psy11143        119 QNSEGSAES  127 (940)
Q Consensus       119 ~n~~g~~~~  127 (940)
                      .+.......
T Consensus        89 ~H~g~~~~~   97 (115)
T cd05769          89 QFYGGTDTD   97 (115)
T ss_pred             EEeCCccce
Confidence            987655443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.30  E-value=0.012  Score=54.30  Aligned_cols=69  Identities=26%  Similarity=0.459  Sum_probs=42.6

Q ss_pred             EEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceE--E--ee--cCe-----EEEEeeeccCCCeEEEEEEEeCC
Q psy11143        240 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVT--Y--EH--DGF-----VLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       240 ~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~--~--~~--~g~-----sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .+..|..++|.|.+.|+ |.. .++|+++|.++.......  .  ..  +++     .|.|..-...+...|+|.+.+..
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            34457889999999995 443 789999999875432111  1  11  232     14343222345568999999875


Q ss_pred             CC
Q psy11143        307 GS  308 (940)
Q Consensus       307 Gs  308 (940)
                      ..
T Consensus        92 l~   93 (102)
T cd05768          92 LP   93 (102)
T ss_pred             CC
Confidence            43

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.28  E-value=0.049  Score=49.52  Aligned_cols=68  Identities=24%  Similarity=0.381  Sum_probs=43.6

Q ss_pred             ecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCC---ceEEeecCeE--EEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~---~~~~~~~g~s--L~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ..|+.++|.|.+.|+ |.. .++|+++|..+....   ......+++-  ...-.+...+...|+|.+.+.....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~~   86 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQE   86 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCCC
Confidence            357889999999994 544 889999999876531   1112222221  1111334456678999999876543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>KOG0613|consensus

Probab=96.25  E-value=0.046  Score=68.90  Aligned_cols=176  Identities=14%  Similarity=0.092  Sum_probs=118.5

Q ss_pred             eCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEE
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA  313 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~  313 (940)
                      ..+.......++...+.|.+.+.+.+.+.|+.+.......     ...+.++.|.+......+.|+|...+..+.....+
T Consensus       234 ~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-----~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v  308 (1205)
T KOG0613|consen  234 SAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-----HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKV  308 (1205)
T ss_pred             CccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-----cCCCccccccccCCccccceeeecccCCcccceee
Confidence            3344556667888899999999888888888765433222     22344577777778888899999888887776554


Q ss_pred             EEEEee--------------ccCCe---EEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEe---
Q psy11143        314 MIRING--------------HRAPR---LVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIH---  372 (940)
Q Consensus       314 ~l~V~~--------------~~~P~---i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~---  372 (940)
                      ...+..              ..+|.   .......+.+..+..+++.|...+.+.| .++|+.++.....+..-.+.   
T Consensus       309 ~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  388 (1205)
T KOG0613|consen  309 TEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVG  388 (1205)
T ss_pred             eEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccc
Confidence            433321              01111   1111123455677889999999999998 49999887655433211111   


Q ss_pred             --eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        373 --RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       373 --~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                        ..-.+.|..+...+.+.|.|.|.|..|........+|.....
T Consensus       389 ~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~  432 (1205)
T KOG0613|consen  389 TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMP  432 (1205)
T ss_pred             cccCcchhhhhcCcccccccccceeccCCcccccchhhcccccC
Confidence              122578888999999999999999999887777766666543

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.24  E-value=0.022  Score=51.81  Aligned_cols=67  Identities=13%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             CCCeEEEEEeecCc-CCC-eEEEEeCCeeeccCC---cE------EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        336 AGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDR---NH------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       336 ~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~~---~~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      ....++|.|.+.|. |.. .|+|.++|..+....   ..      .....+.|.+..-...+...|+|.|........
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~   90 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE   90 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence            45679999999985 553 899999998763221   01      112233455554333456789999998765433

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.20  E-value=0.016  Score=54.99  Aligned_cols=69  Identities=20%  Similarity=0.388  Sum_probs=47.1

Q ss_pred             cCCceeecCCCcEEEEEEeCCCC--CCeEEEee--CCeec------cc-----------cCceEEeee-----ceEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEP--LPRISWSK--DEAEF------VE-----------DRNHKIHRT-----GSLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k--~g~~i------~~-----------~~~~~~~~~-----~sL~I~~  197 (940)
                      .|....+.+|++++|.|...+..  ...+.|++  .|...      ..           ..++.....     ..|.|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            45667889999999999876432  45699998  22211      00           123333211     2599999


Q ss_pred             cccCCCceEEEEEEc
Q psy11143        198 IGPQDSGLYRCTASN  212 (940)
Q Consensus       198 v~~~DsG~YtC~a~N  212 (940)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.18  E-value=0.024  Score=53.90  Aligned_cols=71  Identities=14%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeC------CCeEEEEECCe-----e-c---C--------CCCceEEe----ecCeEEEE
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHP------LPQMTWFHDGN-----S-L---D--------SDDHVTYE----HDGFVLVL  287 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P------~p~ItW~k~g~-----~-l---~--------~~~~~~~~----~~g~sL~I  287 (940)
                      .|....+.+|+.|+|.|......      ...+.|++...     . +   .        ...++...    ....+|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            46667889999999999865322      24689998531     1 0   0        01233331    12245999


Q ss_pred             eeeccCCCeEEEEEEEeC
Q psy11143        288 NGVRESDAGVYNCVAQNS  305 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~  305 (940)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.17  E-value=0.062  Score=48.78  Aligned_cols=64  Identities=16%  Similarity=0.408  Sum_probs=42.0

Q ss_pred             ecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeecCeEEEE---eeeccCCCeEEEEEEEeCCC
Q psy11143        242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~g~sL~I---~~v~~~DsG~YtC~A~N~~G  307 (940)
                      ..|...+|.|.+.|+ |.. .++|++||..+. +..   .....+++ +.+   ..+...+...|+|.+.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~t-yq~~s~l~~~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWT-FYLLKSTEFTPTKGDEYACRVRHNSM   84 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCC-EEEEEEEEECCCCCCeEEEEEEECCC
Confidence            346677999999995 433 889999999886 321   11223332 222   23456677789999998643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=96.13  E-value=0.025  Score=49.03  Aligned_cols=59  Identities=14%  Similarity=0.284  Sum_probs=38.7

Q ss_pred             eEEEEEeecCc-CC-CeEEEEeCCeeeccCCc---E------EEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        339 SVEIPCKPDGE-PL-PRISWSKDEAEFVEDRN---H------KIHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       339 ~vtL~C~v~g~-P~-p~i~W~k~g~~i~~~~~---~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .++|.|.+.|. |. ..++|+|+|..+..+..   .      .....+.|.|......+...|+|.|...
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            36899999986 55 49999999986433211   1      1111234555554556777899999875

>smart00406 IGv Immunoglobulin V-Type

Probab=96.06  E-value=0.017  Score=50.02  Aligned_cols=57  Identities=23%  Similarity=0.512  Sum_probs=36.7

Q ss_pred             eEEEEEEeeccCC--CeEEEEECCE-----eec-------------CCCCeEEEee----ceEEEEcccccCCCeEEEEE
Q psy11143         62 TSRITCLVEGHPL--PQMTWFHDGN-----SLD-------------SDDHVTYEHD----GFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        62 sv~L~C~v~g~P~--p~V~W~kdg~-----~I~-------------~~~~~~~~~~----gs~L~I~~v~~~DsG~YtC~  117 (940)
                      +|.|.|.+.....  ..+.|++...     .+.             ...++.+...    ...|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999876544  3789987431     110             0122222221    24589999999999999996


Q ss_pred             E
Q psy11143        118 A  118 (940)
Q Consensus       118 a  118 (940)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.01  E-value=0.051  Score=47.97  Aligned_cols=63  Identities=25%  Similarity=0.509  Sum_probs=43.0

Q ss_pred             cCCeEEEEEEeec-cCCC-eEEEEECCEeecCCCCeEE---Eeece-----EEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         59 TGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY---EHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~~~~~---~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      .++.++|.|.+.+ +|.. .|+|+++|..+........   ..+|.     .|.+.   ..+...|+|.+.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            4889999999998 5544 8999999998864332111   12332     23444   56667899999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.88  E-value=0.048  Score=49.76  Aligned_cols=68  Identities=13%  Similarity=0.264  Sum_probs=40.4

Q ss_pred             CCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCe--EEEeece-----EEEEcccccC-CCeEEEEEEEeC
Q psy11143         52 PVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHV--TYEHDGF-----VLVLNGVRES-DAGVYNCVAQNS  121 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~--~~~~~gs-----~L~I~~v~~~-DsG~YtC~a~n~  121 (940)
                      |....+..+..++|.|.+.| +|. .+|+|++||..+..+...  ....+++     .|.|.   .+ ....|+|.+.+.
T Consensus         8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~V~H~   84 (96)
T cd07697           8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCIYKHE   84 (96)
T ss_pred             CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeEEEEEEEC
Confidence            33344455678999999999 453 488999999986532110  0111111     12333   33 234599999985


Q ss_pred             C
Q psy11143        122 E  122 (940)
Q Consensus       122 ~  122 (940)
                      .
T Consensus        85 g   85 (96)
T cd07697          85 G   85 (96)
T ss_pred             C
Confidence            4

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=95.80  E-value=0.04  Score=52.02  Aligned_cols=76  Identities=14%  Similarity=0.352  Sum_probs=47.0

Q ss_pred             CCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeec-Ce-----EEEEeeeccCC-CeEEEEEEE
Q psy11143        236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHD-GF-----VLVLNGVRESD-AGVYNCVAQ  303 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~-g~-----sL~I~~v~~~D-sG~YtC~A~  303 (940)
                      |....+..++.++|.|.+.|+ |.. .|+|++||..+.....   .....+ ++     .|.|......+ ...|+|.+.
T Consensus        10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~   89 (115)
T cd05769          10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ   89 (115)
T ss_pred             cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence            333344456789999999995 553 8999999988764321   111222 22     14444333333 568999999


Q ss_pred             eCCCCcee
Q psy11143        304 NSEGSAES  311 (940)
Q Consensus       304 N~~Gs~~~  311 (940)
                      +.......
T Consensus        90 H~g~~~~~   97 (115)
T cd05769          90 FYGGTDTD   97 (115)
T ss_pred             EeCCccce
Confidence            88655543

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.63  E-value=0.063  Score=48.93  Aligned_cols=65  Identities=20%  Similarity=0.297  Sum_probs=40.2

Q ss_pred             CCCeEEEEEee-cCcCCCeEEEEeCCeeec-----cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        336 AGSSVEIPCKP-DGEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       336 ~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~-----~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      ......+.|.+ .|.|.+.|+|+++.....     ....-.....+.|.+......+.-.|+|.|.|..-.
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            34567899998 588999999999721100     011111122345666555555666799999997643

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.61  E-value=0.045  Score=49.97  Aligned_cols=71  Identities=15%  Similarity=0.271  Sum_probs=41.8

Q ss_pred             cCCceeecCCCcEEEEEEeCCC--CCC-eEEEeeCCeecccc--Cce------EEeeeceEEEeecccCCCceEEEEEEc
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGE--PLP-RISWSKDEAEFVED--RNH------KIHRTGSLRLYNIGPQDSGLYRCTASN  212 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~--P~p-~ItW~k~g~~i~~~--~~~------~~~~~~sL~I~~v~~~DsG~YtC~a~N  212 (940)
                      .|....+..|+.++|.|.+.|.  |.. .++|.++++.....  ...      .+...+.|.+..-...+.-.|+|.+..
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3444456678999999999987  433 78999986433210  011      111222344443333344589999987


Q ss_pred             CC
Q psy11143        213 LL  214 (940)
Q Consensus       213 ~~  214 (940)
                      ..
T Consensus        85 ~~   86 (96)
T cd07696          85 PD   86 (96)
T ss_pred             CC
Confidence            54

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.56  E-value=0.12  Score=45.58  Aligned_cols=64  Identities=25%  Similarity=0.512  Sum_probs=43.8

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceE--E-eecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVT--Y-EHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~--~-~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .+..++|.|.+.++ |.. .|+|+++|..+.......  . ..+|.     .|.+.   ..+...|+|.+.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~   80 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE   80 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence            38899999999985 544 899999999886543322  1 22332     13333   566668999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.52  E-value=0.018  Score=48.05  Aligned_cols=52  Identities=25%  Similarity=0.505  Sum_probs=36.2

Q ss_pred             ecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        58 ~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      -.|.+|+|+|...+.   .+.|++++..+....        ..+.+.+-. ++.|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~--------~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD--------EKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCC--------ceEEeeccC-CCCceEEEEeCCC
Confidence            368999999986532   399999997665321        123444444 8899999999643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.50  E-value=0.085  Score=48.07  Aligned_cols=73  Identities=15%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             cCCeEEEEEEe-eccCCCeEEEEECCEeecCCCCeEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         59 TGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        59 eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~~~~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      ......+.|.+ .|+|.+.|+|+++..... ........+|     +.|.+......|.-.|+|.+.+..........++
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~   92 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT   92 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            34577889998 579999999999721110 0011111222     2356655555566689999999875544443333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.38  E-value=0.12  Score=47.20  Aligned_cols=63  Identities=19%  Similarity=0.381  Sum_probs=38.3

Q ss_pred             cCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC---CeEEEeece-----EEEEcccccCCCeEEEEEEEeCC
Q psy11143         59 TGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~---~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .++.++|.|.+.| +|. .+|+|+|||+. ....   ......++.     .|.+........-.|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4667999999998 453 48899999997 3221   011111232     23444332223567999999865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.36  E-value=0.046  Score=45.66  Aligned_cols=52  Identities=29%  Similarity=0.520  Sum_probs=36.2

Q ss_pred             cCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       335 ~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      ..|.+|+|+|...+.   .+.|.+++..+....       ..+.+.+.. ++.|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~-------~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD-------EKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCC-------ceEEeeccC-CCCceEEEEeCCC
Confidence            458899999976522   399999986554322       234444555 8899999999653

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00406 IGv Immunoglobulin V-Type

Probab=95.36  E-value=0.038  Score=47.77  Aligned_cols=56  Identities=27%  Similarity=0.503  Sum_probs=37.5

Q ss_pred             eEEEEEeecCcCCC--eEEEEeCCe-----eec-------------cCCcEEEeee-----ceEEEecCCCCCCeEEEEE
Q psy11143        339 SVEIPCKPDGEPLP--RISWSKDEA-----EFV-------------EDRNHKIHRT-----GSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       339 ~vtL~C~v~g~P~p--~i~W~k~g~-----~i~-------------~~~~~~i~~~-----~sL~I~~v~~~D~G~YtC~  393 (940)
                      +|+|.|.+.....+  .+.|++...     .+.             ...++.+...     .+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899988765543  789987431     010             1234444332     3699999999999999996


Q ss_pred             E
Q psy11143        394 A  394 (940)
Q Consensus       394 A  394 (940)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.31  E-value=0.093  Score=47.89  Aligned_cols=70  Identities=14%  Similarity=0.260  Sum_probs=40.7

Q ss_pred             CCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCce--EEeecCeEEEEe---eeccC-CCeEEEEEEEeCC
Q psy11143        236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV--TYEHDGFVLVLN---GVRES-DAGVYNCVAQNSE  306 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~--~~~~~g~sL~I~---~v~~~-DsG~YtC~A~N~~  306 (940)
                      |....+..+..++|.|.+.|. |.. .++|.++|..+..+...  ....++ ++.+.   .+... ....|+|.+.+..
T Consensus         8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H~g   85 (96)
T cd07697           8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEECC
Confidence            333344456779999999995 543 78999999987543111  111112 22211   22333 2345999999854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA02633 hypothetical protein; Provisional

Probab=95.28  E-value=0.043  Score=45.03  Aligned_cols=40  Identities=13%  Similarity=0.243  Sum_probs=34.6

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCC
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP   45 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~p   45 (940)
                      +...|.|-++..+|+|.|.|+++|..-....++.++|...
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            5678999999999999999999998888888888887643

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=95.23  E-value=0.088  Score=47.96  Aligned_cols=70  Identities=13%  Similarity=0.236  Sum_probs=42.2

Q ss_pred             CeEEEEEEee-ccCCCeEEEEECCEeecCCCCeEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCceEEEEEE
Q psy11143         61 STSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  131 (940)
Q Consensus        61 esv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L  131 (940)
                      +.+.++|.+. |.|.+.|+|+++..... ........++     +.|.+......|...|+|++.+..........+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            4788999885 68999999999722111 0011111222     235665555566678999999976544443333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.12  E-value=0.04  Score=50.53  Aligned_cols=73  Identities=23%  Similarity=0.432  Sum_probs=43.2

Q ss_pred             CCCcEEEecCCeEEEEEEeec-c-CC-CeEEEEECCEeecCC-CCeEEEeec-----eEEEEcccccCCCeEEEEEEEeC
Q psy11143         51 RPVSTTYSTGSTSRITCLVEG-H-PL-PQMTWFHDGNSLDSD-DHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g-~-P~-p~V~W~kdg~~I~~~-~~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .|.......+..++|.|.+.+ + |. ..|+|.++|.. ... .......++     +.|.+..-...-...|+|.|.+.
T Consensus        10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986          10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence            344444557889999999998 4 43 48999999875 111 011111233     22444432333345699999887


Q ss_pred             CCc
Q psy11143        122 EGS  124 (940)
Q Consensus       122 ~g~  124 (940)
                      ...
T Consensus        89 ~l~   91 (99)
T cd04986          89 EGD   91 (99)
T ss_pred             Ccc
Confidence            543

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=94.95  E-value=0.046  Score=46.00  Aligned_cols=49  Identities=27%  Similarity=0.427  Sum_probs=37.4

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+.|.|+|.+.    .+|.|++ |..+....      +.+|.+.....+-.|.|.|.+++
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc
Confidence            45799999762    5699999 65543221      45788888888999999999988

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.93  E-value=0.11  Score=47.45  Aligned_cols=70  Identities=19%  Similarity=0.358  Sum_probs=45.3

Q ss_pred             cEEEecCCeEEE-EEEe-eccCCCeEEEEECCEeecCCCCeEEEeece-----EEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         54 STTYSTGSTSRI-TCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        54 ~~~V~eGesv~L-~C~v-~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ...+.+|+.+.+ .|.+ .|.|++.|+|+.+..... ........+|+     .+.+......|.-.++|.+.+..-.
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            456788999999 9997 568999999998743221 11111112222     2455555566777899999987543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.92  E-value=0.16  Score=46.24  Aligned_cols=63  Identities=21%  Similarity=0.449  Sum_probs=38.2

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCC
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .++.++|.|.+.|+ |.. .|+|+++|.. .....   .....++.     .|.+..-.......|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999995 443 8899999997 32211   11111332     13333322223567999999875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.78  E-value=0.16  Score=46.45  Aligned_cols=74  Identities=18%  Similarity=0.335  Sum_probs=46.5

Q ss_pred             CCeeEEecCCeEEE-EEEE-eeeCCCeEEEEECCeecCCCCceEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        236 PVSTTYSTGSTSRI-TCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       236 p~~~~v~~G~~v~L-~C~v-~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      .....+.+|+.+.+ .|.+ .|.|.+.|+|+.+..... ........+|+     .|.+......|.-.++|++.+..-.
T Consensus         8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704           8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             CCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            34456778899999 9986 568999999998733221 11111222232     2555545555666899999988654


Q ss_pred             ce
Q psy11143        309 AE  310 (940)
Q Consensus       309 ~~  310 (940)
                      ..
T Consensus        87 ~~   88 (97)
T cd07704          87 QD   88 (97)
T ss_pred             CC
Confidence            33

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=94.67  E-value=0.14  Score=48.03  Aligned_cols=70  Identities=11%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC---CeEEEEECCE-e------e------c--CCCCeEEE----eeceEEEEcccc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN-S------L------D--SDDHVTYE----HDGFVLVLNGVR  107 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~---p~V~W~kdg~-~------I------~--~~~~~~~~----~~gs~L~I~~v~  107 (940)
                      .++....+..|..++|.|.++|...   -.+.|+|... .      +      .  ...++...    .+...|.|.+++
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            3455667888999999999977433   3678987421 1      0      0  11122222    223458999999


Q ss_pred             cCCCeEEEEEEE
Q psy11143        108 ESDAGVYNCVAQ  119 (940)
Q Consensus       108 ~~DsG~YtC~a~  119 (940)
                      .+|.+.|.|..+
T Consensus        83 a~DTa~Y~Ca~e   94 (115)
T cd05721          83 ANQTDIYFCKIE   94 (115)
T ss_pred             HHHCeEEEEEee
Confidence            999999999763

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=94.19  E-value=0.12  Score=49.48  Aligned_cols=77  Identities=19%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             ecCCCeEEEEEeecCc-----CCCeEEEEeCCeeec--cCCcEEE--------------eeeceEEEecCCCCCCeEEEE
Q psy11143        334 APAGSSVEIPCKPDGE-----PLPRISWSKDEAEFV--EDRNHKI--------------HRTGSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       334 v~~G~~vtL~C~v~g~-----P~p~i~W~k~g~~i~--~~~~~~i--------------~~~~sL~I~~v~~~D~G~YtC  392 (940)
                      ..-.++|.|.|.+...     +...|.|..++..+.  .+.....              ..+.+|.+.....- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            3457899999999752     234799999988653  1111111              11235777664443 899999


Q ss_pred             EEEeCCeeEEEEEEEEEec
Q psy11143        393 TASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       393 ~A~N~~G~~~~s~~L~V~~  411 (940)
                      +|.......+..+.|+.+.
T Consensus       103 eVt~~~~ege~~i~Lk~~~  121 (130)
T PF08204_consen  103 EVTELSREGETTIELKYRV  121 (130)
T ss_dssp             EEEETTEEEEEEEEEEE--
T ss_pred             EEEecCCCceEEEEEEEEE
Confidence            9999999999888888753

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=93.88  E-value=0.3  Score=44.54  Aligned_cols=68  Identities=16%  Similarity=0.193  Sum_probs=40.9

Q ss_pred             CcEEEEEEeC-CCCCCeEEEeeCCeecccc-----CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143        154 SSVEIPCKPD-GEPLPRISWSKDEAEFVED-----RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  221 (940)
Q Consensus       154 e~vtL~C~v~-g~P~p~ItW~k~g~~i~~~-----~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~  221 (940)
                      ..+.+.|.+. |+|.+.|+|+++.......     ........+.|.+.....+|...|+|.+.+..-......
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~   89 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL   89 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            3478999876 6999999999962211110     111122233466655455555689999999765444333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02633 hypothetical protein; Provisional

Probab=93.85  E-value=0.12  Score=42.43  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             eceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143         97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus        97 ~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      .+..|.|-++..+|+|.|.|.++|..-..+.+..|+|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            455689999999999999999998877777777777754

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=93.81  E-value=0.12  Score=43.54  Aligned_cols=49  Identities=18%  Similarity=0.361  Sum_probs=36.3

Q ss_pred             CCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEe
Q psy11143        244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN  304 (940)
Q Consensus       244 G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N  304 (940)
                      .+.|.|+|.+.    .+|.|++ |..+....       ..+|.+.....+-.|.|.|.+++
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~-------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEVS-------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Cccccccc-------ccEEeccCcccCCCcceEecCcc
Confidence            45799999652    4699999 55543221       23488888888999999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.74  E-value=0.14  Score=46.92  Aligned_cols=73  Identities=23%  Similarity=0.433  Sum_probs=42.7

Q ss_pred             CCCeeEEecCCeEEEEEEEeee--CC-CeEEEEECCeecCCCCc-eEEeecCe-----EEEEeeeccCCCeEEEEEEEeC
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGH--PL-PQMTWFHDGNSLDSDDH-VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNS  305 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~--P~-p~ItW~k~g~~l~~~~~-~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~  305 (940)
                      .|....+..+..++|.|.+.++  |. ..|+|.++|.. ..... .....+++     .|.|..-.......|+|.+.+.
T Consensus        10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986          10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence            3443445568889999999994  43 38999999875 11100 11112332     2444432234445799999987


Q ss_pred             CCC
Q psy11143        306 EGS  308 (940)
Q Consensus       306 ~Gs  308 (940)
                      ...
T Consensus        89 ~l~   91 (99)
T cd04986          89 EGD   91 (99)
T ss_pred             Ccc
Confidence            653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=93.58  E-value=0.2  Score=47.99  Aligned_cols=75  Identities=13%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             ecCCeEEEEEEeec-----cCCCeEEEEECCEeecC---CCCeEEE------------eeceEEEEcccccCCCeEEEEE
Q psy11143         58 STGSTSRITCLVEG-----HPLPQMTWFHDGNSLDS---DDHVTYE------------HDGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        58 ~eGesv~L~C~v~g-----~P~p~V~W~kdg~~I~~---~~~~~~~------------~~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      .=+++|.|.|.+..     -+...|+|.++|+.|-.   .......            .....|.+.....- .|.|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            34789999999964     12347999999987631   1111100            11123566664444 8999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy11143        118 AQNSEGSAESVAMIRI  133 (940)
Q Consensus       118 a~n~~g~~~~~~~L~V  133 (940)
                      +.....+.+..+.|..
T Consensus       104 Vt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  104 VTELSREGETTIELKY  119 (130)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEecCCCceEEEEEEE
Confidence            9988877777766665

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=93.49  E-value=16  Score=41.18  Aligned_cols=118  Identities=16%  Similarity=0.301  Sum_probs=72.2

Q ss_pred             eEEecCCeEEEEEEEee---eCCCeEEEEECCeecC-----------------CCCceEEee--------cCeEEEEeee
Q psy11143        239 TTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLD-----------------SDDHVTYEH--------DGFVLVLNGV  290 (940)
Q Consensus       239 ~~v~~G~~v~L~C~v~G---~P~p~ItW~k~g~~l~-----------------~~~~~~~~~--------~g~sL~I~~v  290 (940)
                      ..+..|..|.|.|...-   .....+.|+--|-++.                 ....+.+..        ..++|+|..+
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            44556999999998753   3345788986554332                 111222221        1346999999


Q ss_pred             ccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCC-eEEEEEeecCc--CCCeEEEEeCCeeec
Q psy11143        291 RESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS-SVEIPCKPDGE--PLPRISWSKDEAEFV  364 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~-~vtL~C~v~g~--P~p~i~W~k~g~~i~  364 (940)
                      .-+.+|-|+|+|....-..+...-+.|...+--.+.        .+|. .....|-+-..  -+++|.|.-+|....
T Consensus       354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~--------~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWN--------TEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             EEEcCCceEEEEecCcchhhhhhheEeccEEEEEEE--------eccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            999999999999877655555555555432111111        1333 33456765433  334899999887543

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=93.46  E-value=0.23  Score=45.29  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=42.1

Q ss_pred             EecCCeEEEEEEeec-cCC--CeEEEEECCEeecCCCCeE------EEeeceEEEEcccccCCCe-EEEEEEEeC
Q psy11143         57 YSTGSTSRITCLVEG-HPL--PQMTWFHDGNSLDSDDHVT------YEHDGFVLVLNGVRESDAG-VYNCVAQNS  121 (940)
Q Consensus        57 V~eGesv~L~C~v~g-~P~--p~V~W~kdg~~I~~~~~~~------~~~~gs~L~I~~v~~~DsG-~YtC~a~n~  121 (940)
                      +.+|..+++.|.+.+ .|.  .+|.|++++..+.......      ....+..+++.. +.+|.| .|+|.|.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            479999999999975 555  5899999776665432111      011223445554 466666 899999744

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG4597|consensus

Probab=92.71  E-value=0.15  Score=57.68  Aligned_cols=89  Identities=17%  Similarity=0.138  Sum_probs=67.9

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEe---CCeee--cc---CCcEEEeeeceEEEecCCCCCCeEEEEEE
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK---DEAEF--VE---DRNHKIHRTGSLRLYNIGPQDSGLYRCTA  394 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k---~g~~i--~~---~~~~~i~~~~sL~I~~v~~~D~G~YtC~A  394 (940)
                      |.+...|....+..++++.++|-+.|.|.+.|+|.+   ++..+  ..   -++..+.+...|.|.+....|+|.|+|.|
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~  276 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA  276 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence            334444555567889999999999999999999976   23222  11   12334456678999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEec
Q psy11143        395 SNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       395 ~N~~G~~~~s~~L~V~~  411 (940)
                      .|..|...+++.+.+..
T Consensus       277 rcg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  277 RCGAGFLRRDVPCSSVK  293 (560)
T ss_pred             ccccceeeccceeeeec
Confidence            99999999988876543

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=92.50  E-value=0.71  Score=43.39  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             CCceeecCCCeEEEEEeecCcCCC---eEEEEeCCe-e--e------------ccCCcEEEeee-----ceEEEecCCCC
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLP---RISWSKDEA-E--F------------VEDRNHKIHRT-----GSLRLYNIGPQ  385 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p---~i~W~k~g~-~--i------------~~~~~~~i~~~-----~sL~I~~v~~~  385 (940)
                      +....+..|..++|+|.+.|.-..   .+.|.|... .  +            ....++.++.+     -+|.|.+++.+
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            444567788899999999775444   678887321 1  0            01123333321     26999999999


Q ss_pred             CCeEEEEEE
Q psy11143        386 DSGLYRCTA  394 (940)
Q Consensus       386 D~G~YtC~A  394 (940)
                      |.+.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=91.82  E-value=39  Score=41.43  Aligned_cols=278  Identities=15%  Similarity=0.168  Sum_probs=153.7

Q ss_pred             EecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce------EEEEE
Q psy11143         57 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA------ESVAM  130 (940)
Q Consensus        57 V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~------~~~~~  130 (940)
                      ...|+.+.|...+.|.....+...-.|..+...   .+......    +-+++.+|.|.-.+.-.....      .....
T Consensus       302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~---~Y~~~n~~----~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~  374 (667)
T PRK14081        302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDS---GYIRNNIY----TWKPKIAGKYSITLWVKDISSKGEYEDKSSID  374 (667)
T ss_pred             eecCceEEEEEEecCCCceEEEEEECCcEEeec---cccccceE----EEeeCCCceEEEEEEEEcCcCcccccceEEEE
Confidence            368999999999998666566544456554311   11122222    234567999988775432221      12344


Q ss_pred             EEEecccC-Ce-e--EecCCceeecCCCcEEEEEEeCCCCCCeEE-E-eeCCeeccccCceEEeeeceEEEeecccCCCc
Q psy11143        131 IRINGHRA-PR-L--VVKPFDMRAPAGSSVEIPCKPDGEPLPRIS-W-SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSG  204 (940)
Q Consensus       131 L~V~~~~~-P~-~--~~~p~~~~v~~Ge~vtL~C~v~g~P~p~It-W-~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG  204 (940)
                      +.+...+. |. +  ++.+.......|+++.+.|.+.+.....+. | .++|..+...   ....+..+.+   .+.-+|
T Consensus       375 f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~---~Y~~~~~~~f---~P~~~G  448 (667)
T PRK14081        375 YTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI---DYGKNNWVNF---IPEEKG  448 (667)
T ss_pred             EEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe---ecccccEEEE---EECCCe
Confidence            45444311 22 1  133334567789999999999875544443 3 2366655432   1112223333   457789


Q ss_pred             eEEEEEE--cCCcc----eeeeeeeeecCCCCe-ee--eCCCeeEEecCCeEEEEEEEeeeCCCeEE--EEECCeecCCC
Q psy11143        205 LYRCTAS--NLLGE----DVAEGYLTVTGAPPI-FI--QRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSD  273 (940)
Q Consensus       205 ~YtC~a~--N~~g~----~s~s~~L~V~~~~p~-~~--~~p~~~~v~~G~~v~L~C~v~G~P~p~It--W~k~g~~l~~~  273 (940)
                      .|+-.+.  +....    ....+.+.|....|. +.  +.+.......|+.+++.|.+++.-...+.  -+.+|..+...
T Consensus       449 ~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t  528 (667)
T PRK14081        449 NYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET  528 (667)
T ss_pred             eEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe
Confidence            9988764  33222    345667778765554 22  33555667889999999999885444333  23455544211


Q ss_pred             CceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCc------eeEEEEEEeeccCCeEE--EcCCceeecCCCeEEEEEe
Q psy11143        274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA------ESVAMIRINGHRAPRLV--VKPFDMRAPAGSSVEIPCK  345 (940)
Q Consensus       274 ~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~------~~s~~l~V~~~~~P~i~--~~p~~~~v~~G~~vtL~C~  345 (940)
                      .   .+.+. .+++.   +.-+|.|+..+.-.....      ...+.+.|.... |...  +.........++.+++...
T Consensus       529 ~---Ys~~~-~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~-pi~nt~~~~~~~~~~~n~~~t~~~~  600 (667)
T PRK14081        529 D---YIKNK-KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREAL-PITNTKIKTSKKKFKCNEEVTFSVK  600 (667)
T ss_pred             e---ccccc-eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCC-CceeeEEEeecceEEcCCeEEEEEE
Confidence            0   11111 14333   566899998765443322      234455555322 3222  2234456777888888888


Q ss_pred             ecCcCCCeEE
Q psy11143        346 PDGEPLPRIS  355 (940)
Q Consensus       346 v~g~P~p~i~  355 (940)
                      +.|.-..-+.
T Consensus       601 ~~gg~~v~Ye  610 (667)
T PRK14081        601 SEGGKDVCYE  610 (667)
T ss_pred             ccCCCcEEEE
Confidence            7765544443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=91.73  E-value=0.2  Score=53.07  Aligned_cols=47  Identities=28%  Similarity=0.394  Sum_probs=40.1

Q ss_pred             CCCeEEEEeCC-eeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143        350 PLPRISWSKDE-AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       350 P~p~i~W~k~g-~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      ..|.+.|...+ ..+.......+..+|.|.+.+...+++|.|+|+.+-
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEE
Confidence            45899999754 556666788899999999999999999999999865

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=91.68  E-value=0.51  Score=43.07  Aligned_cols=64  Identities=17%  Similarity=0.224  Sum_probs=40.8

Q ss_pred             eecCCCcEEEEEEeCC-CCC--CeEEEeeCCeeccccCceE-------EeeeceEEEeecccCCCc-eEEEEEEcC
Q psy11143        149 RAPAGSSVEIPCKPDG-EPL--PRISWSKDEAEFVEDRNHK-------IHRTGSLRLYNIGPQDSG-LYRCTASNL  213 (940)
Q Consensus       149 ~v~~Ge~vtL~C~v~g-~P~--p~ItW~k~g~~i~~~~~~~-------~~~~~sL~I~~v~~~DsG-~YtC~a~N~  213 (940)
                      .+.+|+.+++.|.+.+ .|.  ..|.|+++...+....-..       ......+.+.. +.+|.| .|+|.|.-.
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            3579999999999985 555  4799998665544321110       01112355544 467777 999999753

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02982 hypothetical protein; Provisional

Probab=91.11  E-value=1  Score=46.10  Aligned_cols=117  Identities=13%  Similarity=0.273  Sum_probs=69.9

Q ss_pred             CcEEEecCCeEEEEEEeec-cCCCeEEEEECCE-eecC------------------CCCeE--EEeeceEEEEcccccCC
Q psy11143         53 VSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGN-SLDS------------------DDHVT--YEHDGFVLVLNGVRESD  110 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~-~I~~------------------~~~~~--~~~~gs~L~I~~v~~~D  110 (940)
                      .++....+++|.|.|.... ....+..|+++.. .+..                  ....+  ++.+.++|+|+++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            3456678999999999632 3344788987542 2220                  01122  22445679999999999


Q ss_pred             CeEEEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCC-cEEEEEEeCCCCCCeEEEeeCCe
Q psy11143        111 AGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGS-SVEIPCKPDGEPLPRISWSKDEA  177 (940)
Q Consensus       111 sG~YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge-~vtL~C~v~g~P~p~ItW~k~g~  177 (940)
                      .|-|+|++....+..+. ..-+.|+..   .+.     ..+.++. ...+.|-+.+...+-..|.-+|.
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~---~V~-----~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQKE---DIL-----YVVEEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEecc---eEE-----EEEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            99999999986655544 333444211   011     1122333 35578988764443337877665

>PHA02982 hypothetical protein; Provisional

Probab=90.57  E-value=2.1  Score=43.96  Aligned_cols=117  Identities=17%  Similarity=0.347  Sum_probs=70.9

Q ss_pred             CceeecCCCcEEEEEEeCC-CCCCeEEEeeCCee-ccc------------------cCceEE---eeeceEEEeecccCC
Q psy11143        146 FDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAE-FVE------------------DRNHKI---HRTGSLRLYNIGPQD  202 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g-~P~p~ItW~k~g~~-i~~------------------~~~~~~---~~~~sL~I~~v~~~D  202 (940)
                      .++....+++|.|.|.... ....+..|..+... +..                  ...+.+   ...++|+|.++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            3556678999999998543 33447889874321 110                  011111   124579999999999


Q ss_pred             CceEEEEEEcCCccee-eeeeeeecCCCCeeeeCCCeeEEecCC-eEEEEEEEeeeCCCeEEEEECCee
Q psy11143        203 SGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGS-TSRITCLVEGHPLPQMTWFHDGNS  269 (940)
Q Consensus       203 sG~YtC~a~N~~g~~s-~s~~L~V~~~~p~~~~~p~~~~v~~G~-~v~L~C~v~G~P~p~ItW~k~g~~  269 (940)
                      .|-|+|++....+..+ ...-+.|+.....+       .+.++. ...+.|-+-+...+-..|..+|..
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            9999999998665433 35555553111111       122233 456889886654443489887753

>PHA03283 envelope glycoprotein E; Provisional

Probab=90.25  E-value=8.8  Score=44.80  Aligned_cols=76  Identities=21%  Similarity=0.324  Sum_probs=53.4

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCC---------eEEeC------------CCcEEEecCCeEE
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP---------IFIQR------------PVSTTYSTGSTSR   64 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP---------~~~~~------------p~~~~V~eGesv~   64 (940)
                      ..+.|+|.+++.+++|.|+-...+..+.....+.|+|+.++         ...+.            -......+|+++.
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~  211 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD  211 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence            45789999999999999999999888866666778886521         11111            1234567899999


Q ss_pred             EEEEeeccC-----CCeEEEEE
Q psy11143         65 ITCLVEGHP-----LPQMTWFH   81 (940)
Q Consensus        65 L~C~v~g~P-----~p~V~W~k   81 (940)
                      +.-......     ..+|.||+
T Consensus       212 lsi~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        212 LSVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             EeEEEeeccCCCCceEEEEEEE
Confidence            877664322     23889985

>KOG1026|consensus

Probab=90.07  E-value=0.38  Score=58.76  Aligned_cols=163  Identities=15%  Similarity=0.180  Sum_probs=98.3

Q ss_pred             eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      ...+..|..+++.|.+.+.|.|.+.|+.++............-......+.+        ++|.++|..|....++.+.+
T Consensus       201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~  272 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVV  272 (774)
T ss_pred             hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEE
Confidence            4567789999999999999999999998876654432211110111111111        89999999998887777666


Q ss_pred             eeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEE--Eeee-ceEEEecCCCCCCeEEEEEE
Q psy11143        318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRT-GSLRLYNIGPQDSGLYRCTA  394 (940)
Q Consensus       318 ~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~--i~~~-~sL~I~~v~~~D~G~YtC~A  394 (940)
                      ..  ++.........  .. ....+.-.+.+.|.+...|..++..+...+...  .+.. .-+........+.|.|+|.+
T Consensus       273 ~~--p~~~~~~~~~~--~~-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~  347 (774)
T KOG1026|consen  273 DL--PKAEVLLCSPL--SD-HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFP  347 (774)
T ss_pred             ec--ccccccCCCCc--cc-cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeee
Confidence            53  32222111110  00 111111223367778899988876543322211  1121 23333444667899999999


Q ss_pred             EeCCeeEEEEEEEEEecCC
Q psy11143        395 SNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       395 ~N~~G~~~~s~~L~V~~~~  413 (940)
                      .|..|.........+...|
T Consensus       348 e~~~g~~~~r~~g~~~~~P  366 (774)
T KOG1026|consen  348 ELPGGKNYCRNPGGFMSRP  366 (774)
T ss_pred             cccCccccccCcCccccCC
Confidence            9999988887766666544

>KOG4597|consensus

Probab=89.58  E-value=0.48  Score=53.90  Aligned_cols=86  Identities=17%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             EecCCceeecCCCcEEEEEEeCCCCCCeEEEee---CCeecccc-----CceEEeeeceEEEeecccCCCceEEEEEEcC
Q psy11143        142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK---DEAEFVED-----RNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       142 ~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k---~g~~i~~~-----~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      ..-|....+..|++..++|-+.|.+.+.|+|.+   ++..+.-.     .+..+.....|.|-+....|+|.|+|.+.+.
T Consensus       200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg  279 (560)
T KOG4597|consen  200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCG  279 (560)
T ss_pred             ccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence            334455678889999999999999999999976   33322111     2223445567999999999999999999999


Q ss_pred             CcceeeeeeeeecC
Q psy11143        214 LGEDVAEGYLTVTG  227 (940)
Q Consensus       214 ~g~~s~s~~L~V~~  227 (940)
                      .|-....+.+.+..
T Consensus       280 ~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  280 AGFLRRDVPCSSVK  293 (560)
T ss_pred             cceeeccceeeeec
Confidence            99888887777663

>PHA03042 CD47-like protein; Provisional

Probab=89.16  E-value=1.4  Score=47.11  Aligned_cols=70  Identities=16%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             cCCeEEEEEEeecc-----CCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         59 TGSTSRITCLVEGH-----PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        59 eGesv~L~C~v~g~-----P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      =++++.+.|.++.-     ....+.|..+++.+-.....    +.+.|.+.. ...=.|+|+|+|.+...+.+...+++.
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----cceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence            37899999998642     24479999999887432222    224445543 333489999999987666555555544

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=89.16  E-value=0.52  Score=50.09  Aligned_cols=48  Identities=27%  Similarity=0.380  Sum_probs=41.0

Q ss_pred             CCCeEEEee-CCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcC
Q psy11143        166 PLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       166 P~p~ItW~k-~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      ..|.+.|.. +|..+.+.....+..+|.|.+.+....++|.|+|..+..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            467899998 566667777888999999999999999999999998753

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=88.67  E-value=11  Score=39.22  Aligned_cols=128  Identities=22%  Similarity=0.355  Sum_probs=65.4

Q ss_pred             eEEEEECCeecCCCC---ceEEeecCe-----EEEEe-eeccCCCeEEEEEEEeCCCCcee---EEEEEEeeccCCeEEE
Q psy11143        260 QMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLN-GVRESDAGVYNCVAQNSEGSAES---VAMIRINGHRAPRLVV  327 (940)
Q Consensus       260 ~ItW~k~g~~l~~~~---~~~~~~~g~-----sL~I~-~v~~~DsG~YtC~A~N~~Gs~~~---s~~l~V~~~~~P~i~~  327 (940)
                      .++|+.||.++....   ......+|.     +|++. +......-..+|.+.-.......   ++.+.-.+..+|.+.+
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv   87 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV   87 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence            688999999887432   122223341     24442 22233344789998755443322   2233333345555554


Q ss_pred             cCCceeecCCCeEEEEEeecCcCCC--eEEEEeCCeeeccCCcEEEee-----eceEEEecCCC--CCCe--EEEEEEE
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGP--QDSG--LYRCTAS  395 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~P~p--~i~W~k~g~~i~~~~~~~i~~-----~~sL~I~~v~~--~D~G--~YtC~A~  395 (940)
                           ....|   ...|.+...|..  .+.|.-++.............     .+...|.+...  ...|  +|+|...
T Consensus        88 -----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~  158 (211)
T PF02124_consen   88 -----RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI  158 (211)
T ss_pred             -----EecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence                 23333   356777777744  899997775432222222222     12233333322  2334  7999875

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=88.01  E-value=1.6  Score=39.28  Aligned_cols=68  Identities=18%  Similarity=0.339  Sum_probs=46.1

Q ss_pred             CCCcEEEecCCeEEEEEEeec-----cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEG-----HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g-----~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a  118 (940)
                      .|+...+..|++++..|....     .....|.|..++..++.+....+....+.+++.+.....+-.|-|..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            455667899999999999852     24558999999998876655444444456788877776666777764

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03042 CD47-like protein; Provisional

Probab=87.71  E-value=2.1  Score=45.84  Aligned_cols=71  Identities=21%  Similarity=0.285  Sum_probs=48.7

Q ss_pred             CCCeEEEEEeecCc-----CCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        336 AGSSVEIPCKPDGE-----PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       336 ~G~~vtL~C~v~g~-----P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      =.+++.+.|.++.-     ..-.+.|+.++..+......   +..+|.+. -...-.|+|+|+|.+...+.....+|+-+
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeLk~~  105 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIELQYV  105 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEe-ccccCCCceeEEEeecccCccEEEEEEEE
Confidence            35789999998742     24479999999877533222   22356553 44456899999999877766666666654

>PHA03282 envelope glycoprotein E; Provisional

Probab=86.16  E-value=14  Score=42.43  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=26.6

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCc--eEEEEEEEEEe
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVN   43 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g--~~~~~v~l~V~   43 (940)
                      +.+|.|.+++.+|+|.|.-.+.....  .....+.+.|.
T Consensus       123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            56799999999999999998753222  23444566664

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=84.65  E-value=5.5  Score=36.80  Aligned_cols=43  Identities=14%  Similarity=0.383  Sum_probs=31.0

Q ss_pred             CeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEE
Q psy11143         91 HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRI  133 (940)
Q Consensus        91 ~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V  133 (940)
                      ++.+......|.|+.+++.|+|.|.-++++..|.... ...|.|
T Consensus        63 r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   63 RFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             HEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             eEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            4555555566899999999999999999999998755 344433

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=84.59  E-value=1.1e+02  Score=37.66  Aligned_cols=329  Identities=14%  Similarity=0.161  Sum_probs=167.6

Q ss_pred             EecCCeEEEEEEeecc--CCCeEEEEE---CCEeecCCCCeEEEeeceEEEEcccccCCCeEE--EEEEEeCCCceEE--
Q psy11143         57 YSTGSTSRITCLVEGH--PLPQMTWFH---DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY--NCVAQNSEGSAES--  127 (940)
Q Consensus        57 V~eGesv~L~C~v~g~--P~p~V~W~k---dg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~Y--tC~a~n~~g~~~~--  127 (940)
                      +..|+.+.|.-.+...  -..-+...+   +|...... +..  ..    .+-+-.+..+|.|  .|.|.......+-  
T Consensus       203 ~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~q-dYs--t~----n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD  275 (667)
T PRK14081        203 LICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQ-DYS--TK----NIVSYKEKKSGDYKLLCLVKDMYSNNEFDD  275 (667)
T ss_pred             eecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEec-Ccc--cc----ceEEEEeCCCccEEEEEEEeccCccccccc
Confidence            4458898888655432  222344333   44322211 110  11    2223457789999  6677655433222  


Q ss_pred             --EEEEEEecccCCeeE--ecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCC
Q psy11143        128 --VAMIRINGHRAPRLV--VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS  203 (940)
Q Consensus       128 --~~~L~V~~~~~P~~~--~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~Ds  203 (940)
                        .....|....++.+.  ....+.....|+.+.|...+.|.-...+...-.|..+... .  ......+.   -.+..+
T Consensus       276 ~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~-~--Y~~~n~~~---w~P~~~  349 (667)
T PRK14081        276 RAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKELLYRFIIKGKESEDS-G--YIRNNIYT---WKPKIA  349 (667)
T ss_pred             ceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCceEEEEEECCcEEeec-c--ccccceEE---EeeCCC
Confidence              333344322222221  1112233468999999999998655555544455443221 1  11222232   345678


Q ss_pred             ceEEEEEEc--CCc--c--eeeeeeeeecCC--CCe-ee--eCCCeeEEecCCeEEEEEEEeeeCCCeEE-EE-ECCeec
Q psy11143        204 GLYRCTASN--LLG--E--DVAEGYLTVTGA--PPI-FI--QRPVSTTYSTGSTSRITCLVEGHPLPQMT-WF-HDGNSL  270 (940)
Q Consensus       204 G~YtC~a~N--~~g--~--~s~s~~L~V~~~--~p~-~~--~~p~~~~v~~G~~v~L~C~v~G~P~p~It-W~-k~g~~l  270 (940)
                      |.|.-.+.-  ...  .  ....+.+.+...  .|. +.  ..+....+..|+.+.+.|.+.|.-...+. |. ++|..+
T Consensus       350 G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~v  429 (667)
T PRK14081        350 GKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEE  429 (667)
T ss_pred             ceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEE
Confidence            999887642  111  1  234445555532  232 21  23444567789999999999876544443 33 466655


Q ss_pred             CCCCceEEeecCeEEEEeeeccCCCeEEEEEEE--eCCCCc----eeEEEEEEeeccCCe-EE--EcCCceeecCCCeEE
Q psy11143        271 DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ--NSEGSA----ESVAMIRINGHRAPR-LV--VKPFDMRAPAGSSVE  341 (940)
Q Consensus       271 ~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~--N~~Gs~----~~s~~l~V~~~~~P~-i~--~~p~~~~v~~G~~vt  341 (940)
                      ...   ....+. .+.+   .+.-+|.|+-.+.  +.....    ...+.+.|.. ..|. +.  +.+.......|+.++
T Consensus       430 e~~---~Y~~~~-~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e-~~P~~i~~il~~~~~~~~vg~~i~  501 (667)
T PRK14081        430 EKI---DYGKNN-WVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE-YIPAEIDYILLPVKEYYLVGDDIE  501 (667)
T ss_pred             EEe---eccccc-EEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEec-cCceeeeeEEecccccEEeCCEEE
Confidence            421   111111 2333   3477899997765  333322    2344455543 3453 32  335455678999999


Q ss_pred             EEEeecCcCCCeE--EEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEE--EeCCee----EEEEEEEEEecC
Q psy11143        342 IPCKPDGEPLPRI--SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA--SNLLGE----DVAEGYLTVTGE  412 (940)
Q Consensus       342 L~C~v~g~P~p~i--~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A--~N~~G~----~~~s~~L~V~~~  412 (940)
                      ++|.+++.-...+  .-..+|..+.. ..+  +....+.+.   +.-+|.|+..|  .|....    ....+.+.|.++
T Consensus       502 ~~~~~~~~k~v~y~y~~~~NG~~v~~-t~Y--s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~  574 (667)
T PRK14081        502 IEVIIQNTKDVLIKYILKINGHKVEE-TDY--IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA  574 (667)
T ss_pred             EEEEEeCCCeEEEEEEEEECCEEEEE-eec--cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCC
Confidence            9999987544333  33345544311 111  122234333   45689998755  444432    233455667654

>KOG1026|consensus

Probab=84.07  E-value=1.7  Score=53.26  Aligned_cols=157  Identities=16%  Similarity=0.255  Sum_probs=90.3

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      ...+..|..+++.|.+.+.|.+.+.|+.++.........+..-......+.+        ++|.++|..+.....+.+.+
T Consensus       201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~  272 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVV  272 (774)
T ss_pred             hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEE
Confidence            3557789999999999999999999998776554322211111111112221        89999999888877766666


Q ss_pred             ecccCCeeEecCCceeecCCCcEEEEEE---eCCCCCCeEEEeeCCeeccccCceEEeee---ceEEEeecccCCCceEE
Q psy11143        134 NGHRAPRLVVKPFDMRAPAGSSVEIPCK---PDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYR  207 (940)
Q Consensus       134 ~~~~~P~~~~~p~~~~v~~Ge~vtL~C~---v~g~P~p~ItW~k~g~~i~~~~~~~~~~~---~sL~I~~v~~~DsG~Yt  207 (940)
                      .....-.....+.+.        .-.|.   +.++|.+...|..++..+...........   .-+.....+-.+.|.|+
T Consensus       273 ~~p~~~~~~~~~~~~--------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~  344 (774)
T KOG1026|consen  273 DLPKAEVLLCSPLSD--------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYT  344 (774)
T ss_pred             ecccccccCCCCccc--------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcce
Confidence            542211111111111        22233   23577778888887665432221111111   11222233556789999


Q ss_pred             EEEEcCCcceeeeeeeeec
Q psy11143        208 CTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       208 C~a~N~~g~~s~s~~L~V~  226 (940)
                      |.+.+..|.........+.
T Consensus       345 ~~~e~~~g~~~~r~~g~~~  363 (774)
T KOG1026|consen  345 LFPELPGGKNYCRNPGGFM  363 (774)
T ss_pred             eeecccCccccccCcCccc
Confidence            9999988876655444444

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=82.39  E-value=30  Score=36.13  Aligned_cols=129  Identities=19%  Similarity=0.312  Sum_probs=64.2

Q ss_pred             eEEEEECCEeecCCCC---eEEEeeceEEEEccccc------CCCeEEEEEEEeCCCceEE---EEEEEEecccCCeeEe
Q psy11143         76 QMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGVRE------SDAGVYNCVAQNSEGSAES---VAMIRINGHRAPRLVV  143 (940)
Q Consensus        76 ~V~W~kdg~~I~~~~~---~~~~~~gs~L~I~~v~~------~DsG~YtC~a~n~~g~~~~---~~~L~V~~~~~P~~~~  143 (940)
                      .++|+.||..+.....   .....+|..-.+.-++.      .-.=..+|.+.=.......   ++.++-.+.+.|.+.+
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv   87 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV   87 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence            7889999998874321   11113342212222222      2233689998644332222   3333333344555554


Q ss_pred             cCCceeecCCCcEEEEEEeCCCCC--CeEEEeeCCeeccccCceEEe-----eeceEEEeeccc--CCCc--eEEEEEEc
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGP--QDSG--LYRCTASN  212 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~v~~--~DsG--~YtC~a~N  212 (940)
                      ..     ..|   ...|.+.--|.  ..+.|.-++............     ..+...|.+..+  ...|  +|+|....
T Consensus        88 ~F-----~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~G  159 (211)
T PF02124_consen   88 RF-----EDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIG  159 (211)
T ss_pred             Ee-----cCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEee
Confidence            32     223   45687775553  589999877643222222221     122344544432  2345  89999863

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=82.34  E-value=5.1  Score=46.86  Aligned_cols=75  Identities=23%  Similarity=0.405  Sum_probs=14.0

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCceEE-EEEEEEEeCC--------Ce------------EEeCCCcEEEecCCeEEE
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAGVYR-GDLHVTVNAP--------PI------------FIQRPVSTTYSTGSTSRI   65 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~p--------P~------------~~~~p~~~~V~eGesv~L   65 (940)
                      .+.|.|.+++.+|+|.|+-.+.+..+... ..+.|.|..+        |.            ....+.......|+++.|
T Consensus        88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~  167 (439)
T PF02480_consen   88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL  167 (439)
T ss_dssp             ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred             CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence            46799999999999999999987776543 3355555421        11            012233455678999888


Q ss_pred             EEEeec--cC----CCeEEEEE
Q psy11143         66 TCLVEG--HP----LPQMTWFH   81 (940)
Q Consensus        66 ~C~v~g--~P----~p~V~W~k   81 (940)
                      .-....  ..    ...|.||+
T Consensus       168 ~v~l~~~~~d~~~f~~~i~W~~  189 (439)
T PF02480_consen  168 SVHLQSEAHDDPPFSLEIDWYY  189 (439)
T ss_dssp             --EEEEEESSS--EEEEEEEEE
T ss_pred             eEEEEeccCCCCCeeEEEEEEE
Confidence            877643  22    13789984

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03286 envelope glycoprotein E; Provisional

Probab=81.81  E-value=40  Score=38.87  Aligned_cols=76  Identities=17%  Similarity=0.121  Sum_probs=51.7

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEE-EEEEEEEeC-----CCeEE--------------eCCCcEEEecCCeEEE
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYR-GDLHVTVNA-----PPIFI--------------QRPVSTTYSTGSTSRI   65 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~-----pP~~~--------------~~p~~~~V~eGesv~L   65 (940)
                      ..+.|+|.+++.+++|.|+-...|+.|... ..+.|.|..     +|...              ..+.......|+++.+
T Consensus       125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v  204 (492)
T PHA03286        125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA  204 (492)
T ss_pred             CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence            457899999999999999999999887554 445567731     12111              1233455678999987


Q ss_pred             EEEeec-----cCCCeEEEEE
Q psy11143         66 TCLVEG-----HPLPQMTWFH   81 (940)
Q Consensus        66 ~C~v~g-----~P~p~V~W~k   81 (940)
                      .-....     .-...|.|++
T Consensus       205 Sv~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        205 SVTAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEEEeecccCCCceEEEEEEE
Confidence            766542     1134889975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	940
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-37
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		8e-36
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		9e-27
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		5e-09
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		8e-27
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-26
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-26
3f9p_C	467	Crystal Structure Of Myeloperoxidase From Human Leu		2e-24
3f9p_C	467	Crystal Structure Of Myeloperoxidase From Human Leu		5e-13
1myp_C	466	X-Ray Crystal Structure Of Canine Myeloperoxidase A		2e-24
1myp_C	466	X-Ray Crystal Structure Of Canine Myeloperoxidase A		5e-13
1cxp_C	466	Cryogenic Crystal Structure Of Human Myeloperoxidas		2e-24
1cxp_C	466	Cryogenic Crystal Structure Of Human Myeloperoxidas		5e-13
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		3e-23
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		7e-23
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		4e-06
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		9e-23
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-13
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-22
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		4e-22
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		7e-13
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		1e-22
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-22
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-06
2r5l_A	595	Crystal Structure Of Lactoperoxidase At 2.4a Resolu		6e-21
2r5l_A	595	Crystal Structure Of Lactoperoxidase At 2.4a Resolu		9e-15
2r5l_A	595	Crystal Structure Of Lactoperoxidase At 2.4a Resolu		1e-05
2e9e_A	595	Crystal Structure Of The Complex Of Goat Lactoperox		6e-21
2e9e_A	595	Crystal Structure Of The Complex Of Goat Lactoperox		9e-15
2e9e_A	595	Crystal Structure Of The Complex Of Goat Lactoperox		1e-05
2pt3_A	595	Crystal Structure Of Bovine Lactoperoxidase At 2.34		7e-21
2pt3_A	595	Crystal Structure Of Bovine Lactoperoxidase At 2.34		1e-14
2pt3_A	595	Crystal Structure Of Bovine Lactoperoxidase At 2.34		6e-05
3r5q_A	595	Crystal Structure Of Sheep Lactoperoxidase In Compl		8e-21
3r5q_A	595	Crystal Structure Of Sheep Lactoperoxidase In Compl		1e-14
3r5q_A	595	Crystal Structure Of Sheep Lactoperoxidase In Compl		2e-05
2z5z_A	595	Crystal Structure Of The Complex Of Buffalo Lactope		8e-21
2z5z_A	595	Crystal Structure Of The Complex Of Buffalo Lactope		1e-14
2z5z_A	595	Crystal Structure Of The Complex Of Buffalo Lactope		6e-05
2ips_A	595	Crystal Structure Of A Ternary Complex Of Bovine La		8e-21
2ips_A	595	Crystal Structure Of A Ternary Complex Of Bovine La		1e-14
2ips_A	595	Crystal Structure Of A Ternary Complex Of Bovine La		6e-05
2gj1_A	583	Crystal Structure Of Bovine Lactoperoxidase At 2.3a		8e-21
2gj1_A	583	Crystal Structure Of Bovine Lactoperoxidase At 2.3a		1e-14
2gj1_A	583	Crystal Structure Of Bovine Lactoperoxidase At 2.3a		5e-05
2ikc_A	595	Crystal Structure Of Sheep Lactoperoxidase At 3.25		8e-21
2ikc_A	595	Crystal Structure Of Sheep Lactoperoxidase At 3.25		1e-14
2ikc_A	595	Crystal Structure Of Sheep Lactoperoxidase At 3.25		2e-05
2o86_A	595	Crystal Structure Of A Ternary Complex Of Buffalo L		8e-21
2o86_A	595	Crystal Structure Of A Ternary Complex Of Buffalo L		1e-14
2o86_A	595	Crystal Structure Of A Ternary Complex Of Buffalo L		6e-05
3erh_A	595	First Structural Evidence Of Substrate Specificity		2e-20
3erh_A	595	First Structural Evidence Of Substrate Specificity		2e-14
3erh_A	595	First Structural Evidence Of Substrate Specificity		6e-05
2gjm_A	583	Crystal Structure Of Buffalo Lactoperoxidase At 2.7		2e-20
2gjm_A	583	Crystal Structure Of Buffalo Lactoperoxidase At 2.7		2e-14
2gjm_A	583	Crystal Structure Of Buffalo Lactoperoxidase At 2.7		5e-05
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		2e-19
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		9e-12
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-18
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-18
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		4e-18
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-08
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		4e-18
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		4e-08
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		5e-06
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		4e-18
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		2e-15
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		1e-17
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		3e-06
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		2e-17
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		2e-16
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		6e-17
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-16
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		3e-09
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		7e-17
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-16
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		3e-09
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-16
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		4e-12
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		4e-16
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		4e-16
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		4e-16
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		4e-16
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-05
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-15
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-15
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		7e-15
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-15
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-10
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-14
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-10
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-14
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-12
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-06
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-14
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-12
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		4e-14
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		1e-12
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		6e-05
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		7e-14
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		7e-14
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-13
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-12
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-13
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-09
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-13
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-13
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-13
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		4e-13
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		2e-12
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		4e-13
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-12
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		3e-12
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		5e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		5e-11
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		2e-09
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		2e-10
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		2e-10
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		4e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-10
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-10
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-10
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-10
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		4e-10
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		6e-10
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		4e-10
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		6e-10
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		7e-10
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		9e-10
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		3e-09
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		2e-08
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		3e-09
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		7e-09
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		3e-09
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		2e-08
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		3e-09
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		2e-08
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		3e-09
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		2e-08
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		4e-09
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		4e-09
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		9e-09
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		2e-06
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		1e-08
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		2e-08
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		9e-06
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		2e-05
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		3e-08
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		3e-08
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		3e-08
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		4e-08
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		9e-06
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		6e-08
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		8e-04
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		1e-07
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		1e-07
2wp3_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		1e-07
3knb_B	107	Crystal Structure Of The Titin C-Terminus In Comple		1e-07
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		1e-07
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		2e-07
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		2e-07
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		3e-06
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		2e-07
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		5e-07
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-07
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-07
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		3e-07
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		3e-07
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		4e-07
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		4e-07
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		5e-07
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		1e-06
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		1e-06
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		1e-06
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		2e-06
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		2e-06
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		6e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		2e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		3e-04
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		2e-06
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		2e-06
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		8e-05
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-06
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-06
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		2e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		6e-06
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		2e-05
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		7e-06
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		7e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		7e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		7e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		8e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		8e-06
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		1e-05
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		2e-04
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		1e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		3e-04
3o4o_C	339	Crystal Structure Of An Interleukin-1 Receptor Comp		1e-05
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		1e-05
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		1e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		4e-05
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		1e-04
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		1e-04
2x7l_L	217	Implications Of The Hiv-1 Rev Dimer Structure At 3.		2e-04
3f9p_A	114	Crystal Structure Of Myeloperoxidase From Human Leu		2e-04
1myp_A	108	X-Ray Crystal Structure Of Canine Myeloperoxidase A		2e-04
1cxp_A	104	Cryogenic Crystal Structure Of Human Myeloperoxidas		2e-04
2ocw_A	585	Solution Structure Of Human Secretory Component Len		4e-04
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		5e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 186/421 (44%), Gaps = 18/421 (4%)
Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---PPIFIQRPVSTTYSTG 60
           + +   LVI+ V     G Y+C A N  G       + +     PP F ++      + G
Sbjct: 57  KNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLG 116
Query: 61  STSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
                 C + G    Q++W+ DG  L  D++   ++ H+   L +    +S  G YNC A
Sbjct: 117 FPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSA 176
Query: 119 QNSEGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177
            N  G+A S A + ++ H  P    +KP  +    G S    C   G    +I+W+KD  
Sbjct: 177 SNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR 236
Query: 178 EFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
           E     N+K   +  T +L +  +   D+G Y C ASN+ G+D     L V   PP FI+
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIK 295
Query: 235 R-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVR 291
           +   S        +R  C + G P  ++ W+ D   +   S   +++     VL +  + 
Sbjct: 296 KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLS 355
Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL 351
             D+G Y C A N+ GSA S   +++     P    KP  +    G+ V + C+  G P 
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPP 413
Query: 352 PRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408
            ++SW KD+ E    + +KI       S+ + N+   D G Y+C ASN +G D   G +T
Sbjct: 414 FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473
Query: 409 V 409
           +
Sbjct: 474 L 474

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  149 bits (376), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 180/413 (43%), Gaps = 30/413 (7%)
Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
           ++ S  L+I     E  G+Y CV  N  G    +  +TV AP      P + T   G  +
Sbjct: 302 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 361
Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
             TC   G+P+  ++W  DG ++         H   VL +  V++ D G+Y C  +N   
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIG--------HSESVLRIESVKKEDKGMYQCFVRNDRE 413
Query: 124 SAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           SAE+ A +++ G   P ++ + F +     G SV + C   G P P ISW  D  +   +
Sbjct: 414 SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN 473
Query: 183 RNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
             +++ +           L + ++   D GLY+C A + +G       L V G P  +I+
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIR 531
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
           +        G T  +TC V G+P+  + W  D  +L  +       +G +++ N  R SD
Sbjct: 532 QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSD 591
Query: 295 AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR---APAGSSVEIPCKPDGEPL 351
              Y CVA+N EG + +   + +     PR++  PF      A  G  + + C   G  L
Sbjct: 592 QATYTCVAKNQEGYS-ARGSLEVQVMVLPRII--PFAFEEGPAQVGQYLTLHCSVPGGDL 648
Query: 352 P-RISWSKDEAEFVED---RNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLG 399
           P  I W+ D     ED      ++ R GS L +  +    +G + C A NL G
Sbjct: 649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 199/475 (41%), Gaps = 61/475 (12%)
Query: 16  QREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 74
           Q  H   Y+C+A N  G +   D+HV       +           G+++ I CL+     
Sbjct: 108 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF-- 165
Query: 75  PQMTWFHDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQNS- 121
             +  F +  S  +D+   Y    E+DG  LVL      +RE         Y C  ++  
Sbjct: 166 --VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRL 223
Query: 122 ------EGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSS-VEIPCKPDGEPLPRISWS 173
                   +   + +        P++V +  FDM+  +GSS + + C   G P+P   W 
Sbjct: 224 TGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283
Query: 174 K-------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
           K        +A  + DR  ++  +G+L + +   +DSG Y C  +N +G +  E  LTVT
Sbjct: 284 KFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
            AP      P + T   G  +  TC   G+P+  ++W  DG ++         H   VL 
Sbjct: 342 -APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG--------HSESVLR 392
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCK 345
           +  V++ D G+Y C  +N   SAE+ A +++ G   P ++ + F +     G SV + C 
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV 452
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNL 397
             G P P ISW  D  +   +  +++ +           L + ++   D GLY+C A + 
Sbjct: 453 AGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSK 512
Query: 398 LGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAV 452
           +G       L V G       P+  +     K  VA +T+ +   +A   +D+ V
Sbjct: 513 VGVAEHSAKLNVYG------LPYIRQ--MEKKAIVAGETLIVTCPVAGYPIDSIV 559

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 142/368 (38%), Gaps = 44/368 (11%)
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQD------SGL 205
           +  EI CK  G P+P I W + +   V D     +I   G L       +D      + +
Sbjct: 55  TGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 114
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST-GSTSRITCLVEGHPLPQMTWF 264
           Y C A N  G  ++   + V      + +  V+  +   G+++ I CL+       +  F
Sbjct: 115 YACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF----VADF 169
Query: 265 HDGNSLDSDDHVTY----EHDGFVLVLNG----VR----ESDAGVYNCVAQNS------- 305
            +  S  +D+   Y    E+DG  LVL      +R    E     Y C  ++        
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 229
Query: 306 EGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSS-VEIPCKPDGEPLPRISWSK----- 358
             +   + +        P++V +  FDM+  +GSS + + C   G P+P   W K     
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGT 289
Query: 359 --DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
              +A  + DR  ++  +G+L + +   +DSG Y C  +N +G +  E  LTVT   S +
Sbjct: 290 TRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 347
Query: 417 PAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKL 476
             P T                   +K  S   D        S+    S +++D G     
Sbjct: 348 IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCF 407
Query: 477 LRFPDESA 484
           +R   ESA
Sbjct: 408 VRNDRESA 415

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 158/382 (41%), Gaps = 26/382 (6%)
Query: 48  FIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN 104
           F+  P       G    + C  E    +P + W  DG   +L  DD      +G +L+ N
Sbjct: 24  FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQN 83
Query: 105 GVR----ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
            +     + D G+Y C A   +  +      ++      R + +   + A  G +V + C
Sbjct: 84  ILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKC 143
Query: 161 KPDGEPLPRISWSKDEAEFVE---DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           +  G+P+P I W K++ +      D    +  +G+L++  + P DSG+YRC+A N     
Sbjct: 144 EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTR 203
Query: 218 VA-EGYLTVTGAPPI-----FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD 271
              E  + +   P +     F+QRP +     G  + + C V G+P P  TW      + 
Sbjct: 204 TGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ 263
Query: 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA----QNSEGSAESVAMIRINGHRAPRLVV 327
                     G  L+++ V + D+G Y CV     +N   SAE   ++       P  + 
Sbjct: 264 LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------PPWFLN 317
Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS 387
            P ++ A     +E  C   G+P+P ++W K+    +     +I    +LR+  +   D 
Sbjct: 318 HPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDE 377
Query: 388 GLYRCTASNLLGEDVAEGYLTV 409
           G Y+C A N  G   +   L V
Sbjct: 378 GFYQCVAENEAGNAQSSAQLIV 399

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 170/394 (43%), Gaps = 42/394 (10%)
Query: 46  PIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
           P+F+Q P    +   S     +++C V+G+P P + W  +G  +D      Y   DG +L
Sbjct: 5   PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL---VVKPFDMRAPAGSSVE- 157
           + N  +  DAG Y C+A NS G+  S         R  +L    ++ F  R  +  SV  
Sbjct: 65  INNPNKTQDAGTYQCIATNSFGTIVS---------REAKLQFAYLENFKTRTRSTVSVRR 115
Query: 158 -----IPCKP---DGEPLPRISWSKDE-AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
                + C P    GE     +W  +E   + ++R      TG+L +  +   D G Y C
Sbjct: 116 GQGMVLLCGPPPHSGE--LSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTC 173
Query: 209 TASNLLGEDVAEGYLT--------VTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
             +N +      G  T        V G   P I +Q P +     G+T ++ C   G+P+
Sbjct: 174 VVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV 233
Query: 259 PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           P + W        +     ++ +G + + N  ++ DAG Y CVA+NS G  ++VA  ++ 
Sbjct: 234 PTILWRRADGKPIARKARRHKSNGILEIPN-FQQEDAGSYECVAENSRG--KNVAKGQLT 290
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
            +  P  V    D+      SV   CK +G P P   W K+    +     +I + G+L 
Sbjct: 291 FYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-GTLN 349
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
           +  +   D+G+Y+C A N  G   +   L+V  E
Sbjct: 350 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 383

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 170/394 (43%), Gaps = 42/394 (10%)
Query: 46  PIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
           P+F+Q P    +   S     +++C V+G+P P + W  +G  +D      Y   DG +L
Sbjct: 6   PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL---VVKPFDMRAPAGSSVE- 157
           + N  +  DAG Y C+A NS G+  S         R  +L    ++ F  R  +  SV  
Sbjct: 66  INNPNKTQDAGTYQCIATNSFGTIVS---------REAKLQFAYLENFKTRTRSTVSVRR 116
Query: 158 -----IPCKP---DGEPLPRISWSKDE-AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
                + C P    GE     +W  +E   + ++R      TG+L +  +   D G Y C
Sbjct: 117 GQGMVLLCGPPPHSGE--LSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTC 174
Query: 209 TASNLLGEDVAEGYLT--------VTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
             +N +      G  T        V G   P I +Q P +     G+T ++ C   G+P+
Sbjct: 175 VVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV 234
Query: 259 PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           P + W        +     ++ +G + + N  ++ DAG Y CVA+NS G  ++VA  ++ 
Sbjct: 235 PTILWRRADGKPIARKARRHKSNGILEIPN-FQQEDAGSYECVAENSRG--KNVAKGQLT 291
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
            +  P  V    D+      SV   CK +G P P   W K+    +     +I + G+L 
Sbjct: 292 FYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-GTLN 350
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
           +  +   D+G+Y+C A N  G   +   L+V  E
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes Length = 467

Iteration: 1
 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 519 LGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAM 578
           L + FF+ WR+V EGG+DP+LRG + +PAK  R  +    E+ ++LF     + LDL A+
Sbjct: 249 LSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPAL 308
Query: 579 NIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPG 630
           N+QR RDHG+P YNAWR +CGLP+  T   L   + + ++  KL   YG P 
Sbjct: 309 NMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPN 360

>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes Length = 467

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 771 GRVGPTMRCL-----LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRI 825
           G++G  +R L     L++Q+      NID ++G + E     GRVGP + C++  QF+++
Sbjct: 337 GQLGTVLRNLKLARKLMEQYGT--PNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 394
Query: 826 RDGDRFWYENPSTFKPAQLTQIKQASLARVICDS 859
           RDGDRFW+EN   F   Q   + Q SL R+ICD+
Sbjct: 395 RDGDRFWWENEGVFSMQQRQALAQISLPRIICDN 428

>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3 Angstroms Resolution Length = 466

Iteration: 1
 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 519 LGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAM 578
           L + FF+ WR+V EGG+DP+LRG + +PAK  R  +    E+ ++LF     + LDL A+
Sbjct: 249 LSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPAL 308
Query: 579 NIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPG 630
           N+QR RDHG+P YNAWR +CGLP+  T   L   + + ++  KL   YG P 
Sbjct: 309 NMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPN 360

>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3 Angstroms Resolution Length = 466

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 771 GRVGPTMRCL-----LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRI 825
           G++G  +R L     L++Q+      NID ++G + E     GRVGP + C++  QF+++
Sbjct: 337 GQLGTVLRNLKLARKLMEQYGT--PNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 394
Query: 826 RDGDRFWYENPSTFKPAQLTQIKQASLARVICDS 859
           RDGDRFW+EN   F   Q   + Q SL R+ICD+
Sbjct: 395 RDGDRFWWENEGVFSMQQRQALAQISLPRIICDN 428

>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase Isoform C Length = 466

Iteration: 1
 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 519 LGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAM 578
           L + FF+ WR+V EGG+DP+LRG + +PAK  R  +    E+ ++LF     + LDL A+
Sbjct: 249 LSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPAL 308
Query: 579 NIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPG 630
           N+QR RDHG+P YNAWR +CGLP+  T   L   + + ++  KL   YG P 
Sbjct: 309 NMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPN 360

>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase Isoform C Length = 466

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 771 GRVGPTMRCL-----LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRI 825
           G++G  +R L     L++Q+      NID ++G + E     GRVGP + C++  QF+++
Sbjct: 337 GQLGTVLRNLKLARKLMEQYGT--PNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 394
Query: 826 RDGDRFWYENPSTFKPAQLTQIKQASLARVICDS 859
           RDGDRFW+EN   F   Q   + Q SL R+ICD+
Sbjct: 395 RDGDRFWWENEGVFSMQQRQALAQISLPRIICDN 428

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 121/288 (42%), Gaps = 19/288 (6%)
Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVL 101
           PP FI+ P      +G  +   C   G P P++TW   G  ++S    T E D   G VL
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 102 VLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSS 155
            +  +R   D  VY CVAQNS G     A + +          P + + P         +
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 156 VEIPCKPDGEPLPRISWSKDEAEF---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
             + C   G P P I+W KD         +   K  R+G+L++ +    D G Y C A+N
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 213 LLG---EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS 269
             G      A  Y+ V    P F   P+S     G    ITC+  G P+P + W      
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAED 245
Query: 270 LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
           L  +D +    +  VL L  V+  D+  Y CVA +S G  E+VA I +
Sbjct: 246 LTPEDDMPVGRN--VLELTDVK--DSANYTCVAMSSLGVIEAVAQITV 289

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score =  106 bits (264), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 129/293 (44%), Gaps = 24/293 (8%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 192
           G   PR + +P D    +G      C+  G+P PR++W+K   +    R   I    S  
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 193 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVSTTYS 242
             LR+  +  P+D  +Y C A N +GE      LTV       +G P I +   +     
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYN 299
           T  T+ + C   G+P P++TWF D   +D   S+  +     G  L +    E+D G Y 
Sbjct: 123 T-RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG-ALQIESSEETDQGKYE 180
Query: 300 CVAQNSEG---SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
           CVA NS G   S+ +   +R+  + APR  + P       G +V I C   G P+P + W
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQ-NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW 239
Query: 357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            +   +   + +  + R   L L ++  +DS  Y C A + LG   A   +TV
Sbjct: 240 MQGAEDLTPEDDMPVGRN-VLELTDV--KDSANYTCVAMSSLGVIEAVAQITV 289

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 376
           G   PR + +P D    +G      C+  G+P PR++W+K   +    R   I    S  
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 377 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
             LR+  +  P+D  +Y C A N +GE      LTV  E+ +
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score =  105 bits (263), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 126/280 (45%), Gaps = 12/280 (4%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRL 195
           P   +KP  +    G S    C   G    +I+W+KD  E     N+K   +  T +L +
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR-PVSTTYSTGSTSRITCLVE 254
             +   D+G Y C ASN+ G+D     L V  APP FI++   S        +R  C + 
Sbjct: 66  LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-APPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 255 GHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
           G P  ++ W+ D   +   S   +++     VL +  +   D+G Y C A N+ GSA S 
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH 372
             +++     P    KP  +    G+ V + C+  G P  ++SW KD+ E    + +KI 
Sbjct: 185 TSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 373 RTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
                 S+ + N+   D G Y+C ASN +G     G +T+
Sbjct: 243 SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 8/175 (4%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVL 285
           APP F  +PVS   + G +    C V G    ++TW  D   +    +  +T   +   L
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 344
            +  V + DAG Y C A N  G     A + +     PR + K    R           C
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA--PPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASN 396
           K  G P  ++ W KDE E  E    +   +     L +YN+  +DSG Y C A N
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 116/285 (40%), Gaps = 13/285 (4%)
Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVL 101
           APP F  +PVS   + G +    C V G    ++TW  D   +    +  +T   +   L
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 160
            +  V + DAG Y C A N  G     A + +     PR + K    R           C
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           K  G P  ++ W KDE E  E    +   +     L +YN+  +DSG Y C A N  G  
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
            +   L V   PP+F ++P       G+   + C ++G P  Q++W  D   L S     
Sbjct: 182 SSSTSLKVK-EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 240
Query: 278 YEHDGFVL---VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
              + F+    +LN V  +D G Y C A N  GS   V  I +  
Sbjct: 241 IMSENFLTSIHILN-VDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 125/280 (44%), Gaps = 12/280 (4%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRL 195
           P   +KP  +    G S    C   G    +I+W+KD  E     N+K   +  T +L +
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR-PVSTTYSTGSTSRITCLVE 254
             +   D+G Y C ASN+ G+D     L V   PP FI++   S        +R  C + 
Sbjct: 66  LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 255 GHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
           G P  ++ W+ D   +   S   +++     VL +  +   D+G Y C A N+ GSA S 
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH 372
             +++     P    KP  +    G+ V + C+  G P  ++SW KD+ E    + +KI 
Sbjct: 185 TSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 373 RTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
                 S+ + N+   D G Y+C ASN +G     G +T+
Sbjct: 243 SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 8/175 (4%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVL 285
           APP F  +PVS   + G +    C V G    ++TW  D   +    +  +T   +   L
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 344
            +  V + DAG Y C A N  G     A + +     PR + K    R           C
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASN 396
           K  G P  ++ W KDE E  E    +   +     L +YN+  +DSG Y C A N
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 149/384 (38%), Gaps = 28/384 (7%)
Query: 46  PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
           P+F ++P  T +  GS      +TC    +P     W  +G  L       Y    G ++
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
           + N V+  DAG Y CVA N+ G+  S       G        +   ++   G  V   C 
Sbjct: 65  ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124
Query: 162 PDGEPLPRISWSKDEAEF-----VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS---NL 213
           P     P +S+     EF      + R      TG+L +      D G Y C A+   + 
Sbjct: 125 PPPH-YPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF 183
Query: 214 LGEDVAEGYLTVT--------GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
           + + V   +  ++         AP I  + P  T   TG    + C   G+P+PQ+ W  
Sbjct: 184 ITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW-- 241
Query: 266 DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 325
               LD      +     +L +  V   D G Y C A+N +G        RI  H  P  
Sbjct: 242 --RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG--RDTYQGRIIIHAQPDW 297
Query: 326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ 385
           +    D  A  GS +   C   G+P P + W +D  + +  +N      G LR   +  +
Sbjct: 298 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSGGELRFSKLVLE 356
Query: 386 DSGLYRCTASNLLGEDVAEGYLTV 409
           DSG+Y+C A N  G   A   LTV
Sbjct: 357 DSGMYQCVAENKHGTVYASAELTV 380

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 152/390 (38%), Gaps = 40/390 (10%)
Query: 46  PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
           P+F  +P+S  +   ST     + C     P     W  +G  +  +    ++   G ++
Sbjct: 4   PVFEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLV 63
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
           ++N  +  DAGVY C+A N  G+  S   I   G        +   ++A  G  V +PC 
Sbjct: 64  IMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCN 123
Query: 162 PDGEPLPRISWSKDEAEF-----VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS----- 211
           P     P +S+     EF      + R+     TG+L +      D G Y C A+     
Sbjct: 124 PPAH-YPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDF 182
Query: 212 ------------NLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
                       NL  ED      T   AP I  + P  T    G    + C   G+P+P
Sbjct: 183 STKSVFSKFAQLNLAAED------TRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVP 236
Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
           ++ W     SL S    T E     L +  V   D G Y C A+NS+G        RI  
Sbjct: 237 RIKWRKVDGSL-SPQWTTAEP---TLQIPSVSFEDEGTYECEAENSKG--RDTVQGRIIV 290
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
              P  +    D  A  GS++   C   G+P P + W ++  E +  +N      G LR 
Sbjct: 291 QAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRN-GEPLASQNRVEVLAGDLRF 349
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             +  +DSG+Y+C A N  G   A   L V
Sbjct: 350 SKLSLEDSGMYQCVAENKHGTIYASAELAV 379

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 111/290 (38%), Gaps = 26/290 (8%)
Query: 144 KPFDMRAPAGSSVE---IPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYN-I 198
           +P  +  P  S+ E   + C+    P     W  +  E  +E  +      G+L + N  
Sbjct: 9   QPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPT 68
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR---PVSTTYSTGSTSRITCLVEG 255
             QD+G+Y+C ASN +G  V+   +   G    F +    PV      G    + C    
Sbjct: 69  KAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVM--LPCNPPA 126
Query: 256 H-PLPQMTWFHDG--NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA-QNSEGSAES 311
           H P     W  +   N + +D           L +     SD G Y+C+A  + + S +S
Sbjct: 127 HYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKS 186
Query: 312 V--AMIRIN-GHRAPRLVVKPFDMRAPA------GSSVEIPCKPDGEPLPRISWSKDEAE 362
           V     ++N      RL       R PA      G  V + C   G P+PRI W K +  
Sbjct: 187 VFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGS 246
Query: 363 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
                        +L++ ++  +D G Y C A N  G D  +G + V  +
Sbjct: 247 LSPQWTTA---EPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQ 293

>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution Length = 595

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H V   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTP 487

>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution Length = 595

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 781 LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFK 840
           L+D +K     NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F 
Sbjct: 480 LLDLYKT--PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFT 537
Query: 841 PAQLTQIKQASLARVICDS 859
             Q   +++ S +R+ICD+
Sbjct: 538 EKQRDSLQKVSFSRLICDN 556

>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution Length = 595

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E   + C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSSEHSKVQCEEYCVQGDECFPIMFPKNDP 149

>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase With Nitrate At 3.25 A Resolution Length = 595

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H V   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTP 487

>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase With Nitrate At 3.25 A Resolution Length = 595

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 781 LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFK 840
           L+D +K     NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F 
Sbjct: 480 LLDLYKT--PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFT 537
Query: 841 PAQLTQIKQASLARVICDS 859
             Q   +++ S +R+ICD+
Sbjct: 538 EKQRDSLQKVSFSRLICDN 556

>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase With Nitrate At 3.25 A Resolution Length = 595

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E   + C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSSEHSKVQCEEYCVQGDECFPIMFPKNDP 149

>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A Resolution Reveals Multiple Anion Binding Sites Length = 595

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H +   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487

>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A Resolution Reveals Multiple Anion Binding Sites Length = 595

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F   Q   +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVS 548
Query: 852 LARVICDS 859
            +R+ICD+
Sbjct: 549 FSRLICDN 556

>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A Resolution Reveals Multiple Anion Binding Sites Length = 595

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E     C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149

>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With Tetrahydrofuran At 2.7 A Resolution Length = 595

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H +   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTP 487

>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With Tetrahydrofuran At 2.7 A Resolution Length = 595

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 781 LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFK 840
           L+D +K     NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F 
Sbjct: 480 LLDLYKT--PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFT 537
Query: 841 PAQLTQIKQASLARVICDS 859
             Q   +++ S +R+ICD+
Sbjct: 538 EKQRDSLQKVSFSRLICDN 556

>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With Tetrahydrofuran At 2.7 A Resolution Length = 595

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E   + C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSSEHSKVQCEEYCIQGDNCFPIMFPKNDP 149

>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo Lactoperoxidase With Fluoride Ion At 3.5a Resolution Length = 595

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H +   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487

>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo Lactoperoxidase With Fluoride Ion At 3.5a Resolution Length = 595

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F   Q   +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMS 548
Query: 852 LARVICDS 859
            +R+ICD+
Sbjct: 549 FSRLICDN 556

>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo Lactoperoxidase With Fluoride Ion At 3.5a Resolution Length = 595

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E     C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149

>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine Lactoperoxidase With Thiocyanate And Iodide At 3.1 A Resolution Length = 595

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H +   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487

>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine Lactoperoxidase With Thiocyanate And Iodide At 3.1 A Resolution Length = 595

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F   Q   +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVS 548
Query: 852 LARVICDS 859
            +R+ICD+
Sbjct: 549 FSRLICDN 556

>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine Lactoperoxidase With Thiocyanate And Iodide At 3.1 A Resolution Length = 595

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E     C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149

>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a Resolution Length = 583

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H +   D
Sbjct: 361 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 420
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 421 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 475

>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a Resolution Length = 583

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F   Q   +++ S
Sbjct: 477 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVS 536
Query: 852 LARVICDS 859
            +R+ICD+
Sbjct: 537 FSRLICDN 544

>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a Resolution Length = 583

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E     C++ C     CFP+  P +DP
Sbjct: 87  LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 137

>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A Resolution Reveals The Binding Sites For Formate Length = 595

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H +   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTP 487

>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A Resolution Reveals The Binding Sites For Formate Length = 595

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 781 LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFK 840
           L+D +K     NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F 
Sbjct: 480 LLDLYKT--PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFT 537
Query: 841 PAQLTQIKQASLARVICDS 859
             Q   +++ S +R+ICD+
Sbjct: 538 EKQRDSLQKVSFSRLICDN 556

>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A Resolution Reveals The Binding Sites For Formate Length = 595

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E   + C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSSEHSKVQCEEYCIQGDNCFPIMFPKNDP 149

>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo Lactoperoxidase With Nitrate And Iodide At 2.8 A Resolution Length = 595

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  EL +KLF   H +   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487

>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo Lactoperoxidase With Nitrate And Iodide At 2.8 A Resolution Length = 595

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F   Q   +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMS 548
Query: 852 LARVICDS 859
            +R+ICD+
Sbjct: 549 FSRLICDN 556

>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo Lactoperoxidase With Nitrate And Iodide At 2.8 A Resolution Length = 595

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E     C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149

>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In Mammalian Peroxidases: Crystal Structures Of Substrate Complexes With Lactoperoxidases From Two Different Species Length = 595

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL RG +   +K     + +  EL +KLF   H +   D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487

>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In Mammalian Peroxidases: Crystal Structures Of Substrate Complexes With Lactoperoxidases From Two Different Species Length = 595

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F   Q   +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFS 548
Query: 852 LARVICDS 859
            +R+ICD+
Sbjct: 549 FSRLICDN 556

>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In Mammalian Peroxidases: Crystal Structures Of Substrate Complexes With Lactoperoxidases From Two Different Species Length = 595

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E     C++ C     CFP+  P +DP
Sbjct: 99  LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149

>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a Resolution Length = 583

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
           +L L   FF+ WR++ +GG+DPL RG +   +K     + +  EL +KLF   H +   D
Sbjct: 361 ELPLHTLFFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 420
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           LAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ +  KL  LY  P
Sbjct: 421 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 475

>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a Resolution Length = 583

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F   Q   +++ S
Sbjct: 477 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFS 536
Query: 852 LARVICDS 859
            +R+ICD+
Sbjct: 537 FSRLICDN 544

>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a Resolution Length = 583

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
           + MQWGQ +DHDLD A P T L S E     C++ C     CFP+  P +DP
Sbjct: 87  LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 137

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 157/405 (38%), Gaps = 37/405 (9%)
Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGD---LHVTV--NAPPIFIQRPVSTTYSTGSTSR 64
           L +  V R     Y C   NP    R D   L+V    +AP I    P++T+Y +G    
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTI---SPLNTSYRSGENLN 222
Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           ++C    +P  Q +WF +G         T++     L +  +  +++G Y C A NS+  
Sbjct: 223 LSCHAASNPPAQYSWFVNG---------TFQQSTQELFIPNITVNNSGSYTCQAHNSDTG 273
Query: 125 AESVAMIRINGHRAPRLVVKPFDMRAPAG-----SSVEIPCKPDGEPLPRISWSKDEAEF 179
                +  I  +  P    KPF     +       +V + C+P+ +    + W  +++  
Sbjct: 274 LNRTTVTTITVYAEPP---KPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLP 330
Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-LTVTGAPPIFIQRPVS 238
           V  R    +   +L L ++   D G Y C   N L  D ++   L V   P      P  
Sbjct: 331 VSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSY 390
Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
           T Y  G    ++C    +P  Q +W  DGN          +     L ++ + E ++G+Y
Sbjct: 391 TYYRPGVNLSLSCHAASNPPAQYSWLIDGN---------IQQHTQELFISNITEKNSGLY 441
Query: 299 NCVAQNSEG--SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
            C A NS    S  +V  I ++       +            +V   C+P+ +    + W
Sbjct: 442 TCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWW 501
Query: 357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
              ++  V  R    +   +L L+N+   D+  Y C   N +  +
Sbjct: 502 VNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSAN 546

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 104/253 (41%), Gaps = 18/253 (7%)
Query: 155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 214
           +V   C+P+ +    + W  +++  V  R    +   +L L+N+   D+  Y+C   N +
Sbjct: 128 AVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV 187
Query: 215 GEDVAEGY-LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD 273
               ++   L V   P      P++T+Y +G    ++C    +P  Q +WF +G      
Sbjct: 188 SARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG------ 241
Query: 274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR 333
              T++     L +  +  +++G Y C A NS+       +  I  +  P    KPF   
Sbjct: 242 ---TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP---KPFITS 295
Query: 334 APAG-----SSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSG 388
             +       +V + C+P+ +    + W  +++  V  R    +   +L L ++   D G
Sbjct: 296 NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVG 355
Query: 389 LYRCTASNLLGED 401
            Y C   N L  D
Sbjct: 356 PYECGIQNELSVD 368

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 67  CLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
           C VE +P P+++W  +   +   D   +   +G +L +  V +SD G+Y C A N  G A
Sbjct: 29  CAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA 88
Query: 126 -ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 184
            ES   +++     P++   P +++   G    +PC   G P P +SW K ++   E+  
Sbjct: 89  VESCGALQV--KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146
Query: 185 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
             +  +GSLR++N+  +D+G YRC A N LG
Sbjct: 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 251 CLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
           C VE +P P+++W  +   +   D   +   +G +L +  V +SD G+Y C A N  G A
Sbjct: 29  CAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA 88
Query: 310 -ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
            ES   +++     P++   P +++   G    +PC   G P P +SW K ++   E+  
Sbjct: 89  VESCGALQV--KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
             +  +GSLR++N+  +D+G YRC A N LG
Sbjct: 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 38/374 (10%)
Query: 65  ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN----GVRESDAGVYNCVA 118
           I C  +G+P P   W  +    ++  D  V+       LV++    G  E   G Y C A
Sbjct: 37  IECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFA 96
Query: 119 QNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPD-GEPLPRISWSKDE 176
           +N  G+A S   IR+   ++P    +  D +    G+ + + C P  G P P I W    
Sbjct: 97  RNKFGTALS-NRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSS 155
Query: 177 AE-FVEDRNHKIHRTGSLRLYNIGPQDSGL-YRCTASNLLGEDVAEG------YLTVTGA 228
            E   +D+       G L   N+  QD    Y C A       + +        LT  G 
Sbjct: 156 MEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215
Query: 229 PPIFIQRPVSTTYSTGSTSR----------ITCLVEGHPLPQMTWFHDGNSLDSDDHVTY 278
                +R  S  Y  G+ S           + C+  G P P + W+  G  L SD    +
Sbjct: 216 ----AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD-KAKF 270
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
           E+    L +  V E D+G Y C+A N  GS      +R+    AP  + +P ++    G 
Sbjct: 271 ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA--APYWLDEPKNLILAPGE 328
Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCTAS 395
              + C+ +G P P + W  +  E ++      +R     ++   +       +Y+C  S
Sbjct: 329 DGRLVCRANGNPKPTVQWMVN-GEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS 387
Query: 396 NLLGEDVAEGYLTV 409
           N  G  +A  +++V
Sbjct: 388 NEHGYLLANAFVSV 401

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 21/266 (7%)
Query: 155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRL-YNIG--PQD-SGLYR 207
           ++ I C+  G P P   W+++   F   ++ ++    R+G+L + +  G  P++  G Y+
Sbjct: 34  NILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ 93
Query: 208 CTASNLLGEDVAEGYLTVTGAPPIFIQRPVS-TTYSTGSTSRITC-LVEGHPLPQMTWFH 265
           C A N  G  ++          P++ +  +       G+   + C    G P P + W  
Sbjct: 94  CFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS 153
Query: 266 DG-NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA--------QNSEGSAESVAMIR 316
                +  D  V+  H+G +   N + +     Y+C A        Q        V   R
Sbjct: 154 SSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTR 213
Query: 317 INGHRAPRLVVKPFDMRAPA---GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR 373
               R P  +       +     G  + + C   G P P I+W K   +   D+    + 
Sbjct: 214 GVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENF 273
Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLG 399
             +LR+ N+  +DSG Y C ASN +G
Sbjct: 274 NKALRITNVSEEDSGEYFCLASNKMG 299

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLR 194
           AP +  +  D+    G + ++ C+  G PLP I W +   E ++ R +K+    RT +L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY--STGSTSRITCL 252
           +     +D G+Y C A+N +GE      L +   P      P+   Y  + GST R+  +
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTY---EHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
             G P+P MTWFH    L + +++T    EH   +++ N  R++ AG Y     N  G+ 
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 310 ESVAMIRIN 318
           +++  + I 
Sbjct: 187 DAILDVEIQ 195

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 21/189 (11%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 284
           ++G  P   +     T   G  ++++C + G PLP + W+  G  L          DG  
Sbjct: 3   MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 285 LVLNGVRE--SDAGVYNCVAQNSEGSAESVAMIRING----HRAPRLVVKPFDMRAPAGS 338
             L  + E   D GVY C+A N  G  E+ + + +      H    L  K +      GS
Sbjct: 63  HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYY---GAVGS 119
Query: 339 SVEIPCKPDGEPLPRISW-------SKDEAEFVEDRNHKIHRTGSLRLYNIGPQD-SGLY 390
           ++ +     G P+P ++W          E   +E+  H  H    L + N+  +  +G Y
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTH----LVMKNVQRKTHAGKY 175
Query: 391 RCTASNLLG 399
           +   SN+ G
Sbjct: 176 KVQLSNVFG 184

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLR 378
           AP +  +  D+    G + ++ C+  G PLP I W +   E ++ R +K+    RT +L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 379 LYNIGPQDSGLYRCTASNLLGE 400
           +     +D G+Y C A+N +GE
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGE 88

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 12/269 (4%)
Query: 58  STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 114
           S G +   TC   G P   + W++  G  + S   V  + +G    L +      DAG+Y
Sbjct: 17  SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 75
Query: 115 NCVAQNSEG-SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
            C A +++G + E+  ++ I      R VV P + +   G   E+ C+    P P +SW 
Sbjct: 76  RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWL 133
Query: 173 -SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS-NLLGEDVAEGYLTVTGAPP 230
              +E   + D    +    +L++ NI   D G+YRC       GE      + +   PP
Sbjct: 134 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 193
Query: 231 IFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
                Q+  + T   G     +C   G P P ++WF +G  ++ ++    +     L + 
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 253
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            +  SD G Y C A N  G  E  A +++
Sbjct: 254 NIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRC 208
           G S    C   GEP   I W   + E  +  +   + + G    L +YN   +D+G+YRC
Sbjct: 19  GESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77
Query: 209 TASNLLGEDVAEGYLTVTGAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDG 267
            A++  G+   E  + +     +  +  VS   +  G  + + C V   P P ++W +  
Sbjct: 78  QATDAKGQ-TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH- 135
Query: 268 NSLDSDDHVTYEHDGFVLV------LNGVRESDAGVYNCVAQNSEGSAESVA-------M 314
               +++  T   + F ++      +  + +SD G+Y C     EG  E+         +
Sbjct: 136 ----NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRVEARGEIDFRDII 186
Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
           + +N   A  +  K F+  A  G  +   C+  G P P ISW ++  + +E+ N K    
Sbjct: 187 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEE-NEKYILK 244
Query: 375 GS---LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           GS   L + NI   D G Y C A+N  GED  + +L V
Sbjct: 245 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 298
           S G +   TC   G P   + W++  G  + S   V  + +G    L +      DAG+Y
Sbjct: 17  SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 75
Query: 299 NCVAQNSEG-SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
            C A +++G + E+  ++ I      R VV P + +   G   E+ C+    P P +SW 
Sbjct: 76  RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWL 133
Query: 357 -SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 392
              +E   + D    +    +L++ NI   D G+YRC
Sbjct: 134 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 170

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/487 (20%), Positives = 177/487 (36%), Gaps = 89/487 (18%)
Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF-----IQRPVST 55
           ++ ++  + L I GV R   G Y+C A +     +    V V+  P       ++  V  
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342
Query: 56  TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 115
           T   G   RI     G+P P++ W+ +G  L+S+  +     G VL +  V E D G Y 
Sbjct: 343 T--VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHVLTIMEVSERDTGNYT 397
Query: 116 CVAQNSEGSAESVAMIRINGHRAPRL----VVKPFDMRAPAGSSVEIPCKPDGEPLP--- 168
            +  N     +   ++ +  +  P++    ++ P D     G++  + C     P P   
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPHHI 456
Query: 169 ---------------------------------------RISWSKDEAEFVEDRNHKIHR 189
                                                  +I  +K++   +E +N  +  
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVS- 515
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRI 249
           T  ++  N+    S LY+C A N +G         VT  P I +Q  +  T     +  +
Sbjct: 516 TLVIQAANV----SALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQ--ESVSL 569
Query: 250 TCLVEGHPLPQMTWF---------HDGN-------------SLDSDDHVTYEHDGFVLVL 287
            C  +      +TW+         H G               L++       +D  ++ L
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629
Query: 288 NGVRESDAGVYNCVAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
                 D G Y C+AQ+ +       V  + +    AP +     +     G S+E+ C 
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCT 689
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
             G P P+I W KD    VED    +     +L +  +  +D GLY C A ++LG    E
Sbjct: 690 ASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 749
Query: 405 GYLTVTG 411
            +  + G
Sbjct: 750 AFFIIEG 756

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/425 (19%), Positives = 163/425 (38%), Gaps = 81/425 (19%)
Query: 75  PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA-MIRI 133
           P+  +  DGN +  D    +    +++       S AG+  C A+ ++ S +S+  ++ +
Sbjct: 166 PEKRFVPDGNRISWDSKKGFTIPSYMI-------SYAGMVFCEAKINDESYQSIMYIVVV 218
Query: 134 NGHRAPRLVVKP-FDMRAPAGSSVEIPCKPDGEPLPRI--SW----SKDEAEFVEDRNHK 186
            G+R   +V+ P   +    G  + + C    E    I  +W    SK + + + +R+ K
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 187 IHRTGSLRLY-------NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
                 ++ +        +   D GLY C AS+ L       ++ V   P +     + +
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Query: 240 TY--STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 297
               + G   RI     G+P P++ W+ +G  L+S+  +     G VL +  V E D G 
Sbjct: 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHVLTIMEVSERDTGN 395
Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRL----VVKPFDMRAPAGSSVEIPCKPDGEPLP- 352
           Y  +  N     +   ++ +  +  P++    ++ P D     G++  + C     P P 
Sbjct: 396 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPH 454
Query: 353 -----------------------------------------RISWSKDEAEFVEDRNHKI 371
                                                    +I  +K++   +E +N  +
Sbjct: 455 HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV 514
Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLL--GEDVAEGYLTVTGENSVEPAPHTSREPSASK 429
             T  ++  N+    S LY+C A N +  GE V   ++T   E +++P    + + S S 
Sbjct: 515 S-TLVIQAANV----SALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSL 569
Query: 430 PSVAD 434
              AD
Sbjct: 570 WCTAD 574

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 134/347 (38%), Gaps = 41/347 (11%)
Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST---G 60
           R+    LV    Q    G Y C A  PAGV      V        I  P  T   T   G
Sbjct: 58  RKDEGSLVFLRPQASDEGHYQCFAETPAGV--ASSRVISFRKTYLIASPAKTHEKTPIEG 115
Query: 61  STSRITCLV-EGHPLPQMTWFH-------DGNSLDSDDHVTYEHDG--FVLVLNGVRESD 110
              ++ C++   +P P +TW         + +  D D  +T   DG  +  ++     SD
Sbjct: 116 RPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD 175
Query: 111 AGVYNCVAQNSEGSAESVAMIRI------------NGHRAPRLVVKPFDMRAPAGSSVEI 158
              Y C A+N+    E V ++               G   P+ V K  DM A AG    I
Sbjct: 176 IYKYVCTAKNA-AVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK--DMMAKAGDVTMI 232
Query: 159 PCKPDGEPLPRISWSKDEAEFV---EDRNHKIHRTGSLRLY--NIGPQDSGLYRCTASNL 213
            C     P+   ++ K+  +     EDR  + +RT   RL      P+D G+Y C   N 
Sbjct: 233 YCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG 292
Query: 214 LGEDVAEGY-LTVTGAPPIFIQRPVST-TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD 271
           +G+       LTV  AP  + Q+P        G    I C V G P P + W H+   L 
Sbjct: 293 VGKPQKHSLKLTVVSAPK-YEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL- 350
Query: 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           S    T    G  LV+ GV+  D G Y C A N  G      ++++N
Sbjct: 351 SGGRATVTDSG--LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 162/401 (40%), Gaps = 42/401 (10%)
Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDH-VTYEHDGF 99
           V+  P+   +P    +   + + + C++EG+    + +W  DG S +  +H      D  
Sbjct: 3   VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDM--RAP-AGSSV 156
            LV    + SD G Y C A+   G A S    R+   R   L+  P     + P  G   
Sbjct: 63  SLVFLRPQASDEGHYQCFAETPAGVASS----RVISFRKTYLIASPAKTHEKTPIEGRPF 118
Query: 157 EIPCK-PDGEPLPRISWSK-----DEAEFVEDRNHKIHR--TGSLRLYNIGPQD-SGLYR 207
           ++ C  P+  P P I+W K     D    V D + +I     G+L    +  +D S +Y+
Sbjct: 119 QLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 208 --CTASNL-LGEDVAEGYLTVTGAP-----------PIFIQRPVSTTYSTGSTSRITCLV 253
             CTA N  + E+V      + G             P ++ + +      G  + I C+ 
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA--KAGDVTMIYCMY 236
Query: 254 EGHPLPQMTWFHDGNSLDS--DDHVTYEH--DGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
             +P+    +F +G  ++   +D +T  +   G  L+       D GVY C   N  G  
Sbjct: 237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296
Query: 310 ESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
           +  ++ ++    AP+   KP   +    G  V IPCK  G P P + WS +       R 
Sbjct: 297 QKHSL-KLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR- 354
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             +  +G L +  +   D G Y C A+N  G+   E  + V
Sbjct: 355 ATVTDSG-LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 138/332 (41%), Gaps = 47/332 (14%)
Query: 16  QREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 74
           Q  H   Y+C+A N  G +   D+HV       +           G+++ I CL+     
Sbjct: 79  QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF-- 136
Query: 75  PQMTWFHDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-- 120
             +  F +  S  +D+   Y    E+DG  LVL      +RE         Y C  ++  
Sbjct: 137 --VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRL 194
Query: 121 --------SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
                   ++G       I  +  R P LV KP ++      ++ + C   G P P   W
Sbjct: 195 TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMV--AHTISLLCPAQGFPAPSFRW 252
Query: 173 SK-------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            K        +A  + DR  ++  +G+L + +   +DSG Y C  +N +G +  E  LTV
Sbjct: 253 YKFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 310
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
           T AP      P + T   G  +  TC   G+P+  ++W  DG ++         H   VL
Sbjct: 311 T-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG--------HSESVL 361
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            +  V++ D G+Y C  +N   SAE+ A +++
Sbjct: 362 RIESVKKEDKGMYQCFVRNDRESAEASAELKL 393

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 54/388 (13%)
Query: 46  PIFIQRPVSTT-YSTGSTSRITCLVEGHPLPQMTWFH-DGNSL-DSDDHVTYEHDGFVLV 102
           P+F++ P +   +S  + + I C   G+P+P++ W   DG ++ D         DG  LV
Sbjct: 10  PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLV 68
Query: 103 LNGVRESD------AGVYNCVAQNSEGS--AESVAMIRINGHRAPRLVVKPFDMRAPAGS 154
               R  D      A VY C+A+N  GS  +  V +  +        V K   +R   G+
Sbjct: 69  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR---GN 125
Query: 155 SVEIPCK-PD--GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GL 205
           S  I C  P    + +  +SW  DE E        D  + +  +G L +  +GP+D    
Sbjct: 126 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 185
Query: 206 YRC-TASNLLGE---DVAEGYLTVT-----GAP--PIFIQRPVSTTYSTGSTSRITCLVE 254
           Y+C T   L GE      +G L +T      AP  P  +Q+P+        T  + C  +
Sbjct: 186 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM--VAHTISLLCPAQ 243
Query: 255 GHPLPQMTW--FHDGNSLDS----DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
           G P P   W  F +G +       +D V  +  G +++ + V E D+G Y CV  NS G 
Sbjct: 244 GFPAPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVE-DSGKYLCVVNNSVGG 301
Query: 309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
                ++ +    + +  + P       G      C+  G P+  +SW KD         
Sbjct: 302 ESVETVLTVTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG---- 355
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASN 396
              H    LR+ ++  +D G+Y+C   N
Sbjct: 356 ---HSESVLRIESVKKEDKGMYQCFVRN 380

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 139/369 (37%), Gaps = 47/369 (12%)
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQD------SGL 205
           +  EI CK  G P+P I W + +   V D     +I   G L       +D      + +
Sbjct: 26  TGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 85
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST-GSTSRITCLVEGHPLPQMTWF 264
           Y C A N  G  ++   + V      + +  V+  +   G+++ I CL+       +  F
Sbjct: 86  YACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF----VADF 140
Query: 265 HDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-------- 304
            +  S  +D+   Y    E+DG  LVL      +RE         Y C  ++        
Sbjct: 141 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 200
Query: 305 --SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK---- 358
             ++G       I  +  R P LV KP ++      ++ + C   G P P   W K    
Sbjct: 201 SATKGRLVITEPISSSAPRTPALVQKPLELMV--AHTISLLCPAQGFPAPSFRWYKFIEG 258
Query: 359 ---DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
               +A  + DR  ++  +G+L + +   +DSG Y C  +N +G +  E  LTVT   S 
Sbjct: 259 TTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 316
Query: 416 EPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMK 475
           +  P T                   +K  S   D        S+    S +++D G    
Sbjct: 317 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQC 376
Query: 476 LLRFPDESA 484
            +R   ESA
Sbjct: 377 FVRNDRESA 385

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 138/332 (41%), Gaps = 47/332 (14%)
Query: 16  QREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 74
           Q  H   Y+C+A N  G +   D+HV       +           G+++ I CL+     
Sbjct: 73  QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF-- 130
Query: 75  PQMTWFHDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-- 120
             +  F +  S  +D+   Y    E+DG  LVL      +RE         Y C  ++  
Sbjct: 131 --VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRL 188
Query: 121 --------SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
                   ++G       I  +  R P LV KP ++      ++ + C   G P P   W
Sbjct: 189 TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMV--AHTISLLCPAQGFPAPSFRW 246
Query: 173 SK-------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            K        +A  + DR  ++  +G+L + +   +DSG Y C  +N +G +  E  LTV
Sbjct: 247 YKFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
           T AP      P + T   G  +  TC   G+P+  ++W  DG ++         H   VL
Sbjct: 305 T-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG--------HSESVL 355
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            +  V++ D G+Y C  +N   SAE+ A +++
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 54/388 (13%)
Query: 46  PIFIQRPVSTT-YSTGSTSRITCLVEGHPLPQMTWFH-DGNSL-DSDDHVTYEHDGFVLV 102
           P+F++ P +   +S  + + I C   G+P+P++ W   DG ++ D         DG  LV
Sbjct: 4   PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLV 62
Query: 103 LNGVRESD------AGVYNCVAQNSEGS--AESVAMIRINGHRAPRLVVKPFDMRAPAGS 154
               R  D      A VY C+A+N  GS  +  V +  +        V K   +R   G+
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR---GN 119
Query: 155 SVEIPCK-PD--GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GL 205
           S  I C  P    + +  +SW  DE E        D  + +  +G L +  +GP+D    
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179
Query: 206 YRC-TASNLLGE---DVAEGYLTVT-----GAP--PIFIQRPVSTTYSTGSTSRITCLVE 254
           Y+C T   L GE      +G L +T      AP  P  +Q+P+        T  + C  +
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM--VAHTISLLCPAQ 237
Query: 255 GHPLPQMTW--FHDGNSLDS----DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
           G P P   W  F +G +       +D V  +  G +++ + V E D+G Y CV  NS G 
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVE-DSGKYLCVVNNSVGG 295
Query: 309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
                ++ +    + +  + P       G      C+  G P+  +SW KD         
Sbjct: 296 ESVETVLTVTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG---- 349
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASN 396
              H    LR+ ++  +D G+Y+C   N
Sbjct: 350 ---HSESVLRIESVKKEDKGMYQCFVRN 374

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 139/369 (37%), Gaps = 47/369 (12%)
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQD------SGL 205
           +  EI CK  G P+P I W + +   V D     +I   G L       +D      + +
Sbjct: 20  TGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST-GSTSRITCLVEGHPLPQMTWF 264
           Y C A N  G  ++   + V      + +  V+  +   G+++ I CL+       +  F
Sbjct: 80  YACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF----VADF 134
Query: 265 HDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-------- 304
            +  S  +D+   Y    E+DG  LVL      +RE         Y C  ++        
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 194
Query: 305 --SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK---- 358
             ++G       I  +  R P LV KP ++      ++ + C   G P P   W K    
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMV--AHTISLLCPAQGFPAPSFRWYKFIEG 252
Query: 359 ---DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
               +A  + DR  ++  +G+L + +   +DSG Y C  +N +G +  E  LTVT   S 
Sbjct: 253 TTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 310
Query: 416 EPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMK 475
           +  P T                   +K  S   D        S+    S +++D G    
Sbjct: 311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQC 370
Query: 476 LLRFPDESA 484
            +R   ESA
Sbjct: 371 FVRNDRESA 379

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 90/190 (47%), Gaps = 27/190 (14%)
Query: 144 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGP 200
           K F+  A  G  +   C+  G P P ISW ++  + +E+ N K    GS   L + NI  
Sbjct: 10  KSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEE-NEKYILKGSNTELTVRNIIN 67
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ 260
            D G Y C A+N  GED  + +L V   P I IQ    TTY  G  + + C  EG P+P+
Sbjct: 68  SDGGPYVCRATNKAGEDEKQAFLQVFVQPHI-IQLKNETTYENGQVT-LVCDAEGEPIPE 125
Query: 261 MTW--------FHDGN-SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
           +TW        F +G+ SLD    V  +H    L +  V+ SD+G Y+C A +       
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS------- 178
Query: 312 VAMIRINGHR 321
               RI GH+
Sbjct: 179 ----RIGGHQ 184

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 293
           Q+  + T   G     +C   G P P ++WF +G  ++ ++    +     L +  +  S
Sbjct: 9   QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS 68
Query: 294 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
           D G Y C A N  G  E  A +++     P ++    +     G  V + C  +GEP+P 
Sbjct: 69  DGGPYVCRATNKAGEDEKQAFLQV--FVQPHIIQLKNETTYENG-QVTLVCDAEGEPIPE 125
Query: 354 ISWSK--DEAEFVE-DRN-------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
           I+W +  D   F E D++          H + SL + ++   DSG Y C A++ +G    
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK 185
Query: 404 EGYLTV 409
             YL +
Sbjct: 186 SMYLDI 191

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG---F 99
           P  I+ P          + + C VEG P P + WF DG  + +++   H     DG   F
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAG 153
              + G +E D G Y CVA+N  G A S      +A++R +        V+P D R   G
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKG 123
Query: 154 SSVEIPC-KPDGEPLPRISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG 204
            +  + C  P G P P + W KD           F      +I   G+L + N+ P D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 205 LYRCTASNLLG 215
            Y+C A NL+G
Sbjct: 184 NYKCIAQNLVG 194

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG---F 283
           P  I+ P          + + C VEG P P + WF DG  + +++   H     DG   F
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAG 337
              + G +E D G Y CVA+N  G A S      +A++R +        V+P D R   G
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKG 123
Query: 338 SSVEIPC-KPDGEPLPRISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG 388
            +  + C  P G P P + W KD           F      +I   G+L + N+ P D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 389 LYRCTASNLLG 399
            Y+C A NL+G
Sbjct: 184 NYKCIAQNLVG 194

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G 375
           +++PR++  P D+         + CK +G+P P I W KD  E V     K HR     G
Sbjct: 7   YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDG 65
Query: 376 SLRLYNI----GPQDSGLYRCTASNLLGEDVA 403
           +L  Y        QD G Y C A N +G+ V+
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS 97

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG---F 99
           P  I+ P          + + C VEG P P + WF DG  + +++   H     DG   F
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAG 153
              + G +E D G Y CVA+N  G A S      +A++R +        V+P D R   G
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKG 123
Query: 154 SSVEIPC-KPDGEPLPRISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG 204
            +  + C  P G P P + W KD           F      +I   G+L + N+ P D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 205 LYRCTASNLLG 215
            Y+C A NL+G
Sbjct: 184 NYKCIAQNLVG 194

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG---F 283
           P  I+ P          + + C VEG P P + WF DG  + +++   H     DG   F
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAG 337
              + G +E D G Y CVA+N  G A S      +A++R +        V+P D R   G
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKG 123
Query: 338 SSVEIPC-KPDGEPLPRISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG 388
            +  + C  P G P P + W KD           F      +I   G+L + N+ P D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 389 LYRCTASNLLG 399
            Y+C A NL+G
Sbjct: 184 NYKCIAQNLVG 194

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G 375
           +++PR++  P D+         + CK +G+P P I W KD  E V     K HR     G
Sbjct: 7   YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDG 65
Query: 376 SLRLYNI----GPQDSGLYRCTASNLLGEDVA 403
           +L  Y        QD G Y C A N +G+ V+
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS 97

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 8/200 (4%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEH 280
           +T   P F Q   S     GST+     + G P+P+++WF DG  + +       +++  
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSS 339
               L +  V ++++G Y+  A N  G A S A + +    A P  V +   M    GS 
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 396
           V +  +  G P P + + +D AE     + +I + G   SL +    P+DSG Y   A+N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 397 LLGEDVAEGYLTVTGENSVE 416
            +G   +   L V GE   E
Sbjct: 181 SVGRATSTAELLVQGETREE 200

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------ 98
           PP  ++ P     S G  + + C  EG P P + W+  G  +++D      H        
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 99  --FVLVLNGVRES-DAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMR 149
             F+ +++G +   D GVY CVA+N  G A S      VA++R +  +       P D+ 
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQ------NPSDVM 122
Query: 150 APAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYR 207
              G    + C+P  G P P ISW KD +   +D++ +I  R G L +      D+G Y 
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPL-DDKDERITIRGGKLMITYTRKSDAGKYV 181
Query: 208 CTASNLLGEDVAE-GYLTVTGAP 229
           C  +N++GE  +E   LTV   P
Sbjct: 182 CVGTNMVGERESEVAELTVLERP 204

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 25/207 (12%)
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
           G L     PP  ++ P     S G  + + C  EG P P + W+  G  +++D      H
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 281 DG--------FVLVLNGVRES-DAGVYNCVAQNSEGSAES------VAMIRINGHRAPRL 325
                     F+ +++G +   D GVY CVA+N  G A S      VA++R +  +    
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQ---- 116
Query: 326 VVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIG 383
              P D+    G    + C+P  G P P ISW KD +   +D++ +I  R G L +    
Sbjct: 117 --NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL-DDKDERITIRGGKLMITYTR 173
Query: 384 PQDSGLYRCTASNLLGEDVAE-GYLTV 409
             D+G Y C  +N++GE  +E   LTV
Sbjct: 174 KSDAGKYVCVGTNMVGERESEVAELTV 200

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGS 192
           G   P ++ KP +     G      C   G+P P I W K+  +    + R   + + G 
Sbjct: 3   GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 193 LRLYNIGP----QDSGLYRCTASNLLGEDV-AEGYLTVT------GAPPIFIQRPVSTTY 241
           + +  I P    +D   Y C A N +G+ V A+  LT+          P+  Q P +   
Sbjct: 63  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
             G T  +TC   G+P P + W  +   +D  +      DGF+ + N  RE D G Y CV
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENS-REEDQGKYECV 181
Query: 302 AQNSEGSAESVA 313
           A+NS G+  S A
Sbjct: 182 AENSMGTEHSKA 193

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 12/188 (6%)
Query: 226 TGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDG 282
           TGA PP  I++P +     G  +   C   G P P + W  +G  +      +   E  G
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 283 FVLVL--NGVRES-DAGVYNCVAQNSEGSAESV-AMIRI-NGHRAPR----LVVKPFDMR 333
            + +L    VR   D   Y CVA+N  G A S  A + I  G + P     +   P    
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 393
              G +V + CK  G P P I W K++ +          + G L++ N   +D G Y C 
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
Query: 394 ASNLLGED 401
           A N +G +
Sbjct: 182 AENSMGTE 189

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLY 196
           P ++ KP +     G      C   G+P P I W K+  +    + R   + + G + + 
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 197 NIGP----QDSGLYRCTASNLLGEDV-AEGYLTV------TGAPPIFIQRPVSTTYSTGS 245
            I P    +D   Y C A N +G+ V A+  LT+          P+  Q P +     G 
Sbjct: 69  RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 305
           T  +TC   G+P P + W  +   +D  +      DGF+ + N  RE D G Y CVA+NS
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENS-REEDQGKYECVAENS 187
Query: 306 EGSAESVA 313
            G+  S A
Sbjct: 188 MGTEHSKA 195

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 11/184 (5%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLV 286
           PP  I++P +     G  +   C   G P P + W  +G  +      +   E  G + +
Sbjct: 8   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 67
Query: 287 L--NGVRES-DAGVYNCVAQNSEGSAESV-AMIRI-NGHRAPR----LVVKPFDMRAPAG 337
           L    VR   D   Y CVA+N  G A S  A + I  G + P     +   P       G
Sbjct: 68  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 338 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
            +V + CK  G P P I W K++ +          + G L++ N   +D G Y C A N 
Sbjct: 128 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENS 187
Query: 398 LGED 401
           +G +
Sbjct: 188 MGTE 191

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 192
           G   PR + +P D    +G      C+  G+P PR++W+K   +    R   I    S  
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 193 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVSTTYS 242
             LR+  +  P+D  +Y C A N +GE      LTV       +G P I +   +     
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYN 299
           T  T+ + C   G+P P++TWF D   +D   S+  +     G  L +    E+D G Y 
Sbjct: 123 T-RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG-ALQIESSEETDQGKYE 180
Query: 300 CVAQNSEG 307
           CVA NS G
Sbjct: 181 CVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 18/186 (9%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVL 285
           PP FI+ P      +G  +   C   G P P++TW   G  ++S    T E D   G VL
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 286 VLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSS 339
            +  +R   D  VY CVAQNS G     A + +          P + + P         +
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGLYRCT 393
             + C   G P P I+W KD   F+       N +I   R+G+L++ +    D G Y C 
Sbjct: 126 ATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 394 ASNLLG 399
           A+N  G
Sbjct: 183 ATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 376
           G   PR + +P D    +G      C+  G+P PR++W+K   +    R   I    S  
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 377 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
             LR+  +  P+D  +Y C A N +GE      LTV  E+ +
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 192
           G   PR + +P D    +G      C+  G+P PR++W+K   +    R   I    S  
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 193 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVSTTYS 242
             LR+  +  P+D  +Y C A N +GE      LTV       +G P I +   +     
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYN 299
           T  T+ + C   G+P P++TWF D   +D   S+  +     G  L +    E+D G Y 
Sbjct: 123 T-RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG-ALQIESSEETDQGKYE 180
Query: 300 CVAQNSEG 307
           CVA NS G
Sbjct: 181 CVATNSAG 188

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 18/186 (9%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVL 285
           PP FI+ P      +G  +   C   G P P++TW   G  ++S    T E D   G VL
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 286 VLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSS 339
            +  +R   D  VY CVAQNS G     A + +          P + + P         +
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGLYRCT 393
             + C   G P P I+W KD   F+       N +I   R+G+L++ +    D G Y C 
Sbjct: 126 ATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 394 ASNLLG 399
           A+N  G
Sbjct: 183 ATNSAG 188

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 376
           G   PR + +P D    +G      C+  G+P PR++W+K   +    R   I    S  
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 377 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
             LR+  +  P+D  +Y C A N +GE      LTV  E+ +
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYN 197
           P  V  P D    +G      C+  GEP PRI+W K   +    R   I    G+  +  
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 198 IGP----QDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVSTTYSTGST 246
           I P    +D  +Y CTA+N LGE      L+V       +G P I +  P       G T
Sbjct: 68  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMG-PQLKVVEKGRT 126
Query: 247 SRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
           + + C   G+P P+++WF D   +D   S+  +     G  L +    ESD G Y CVA 
Sbjct: 127 ATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSG-ALQIESSEESDQGKYECVAT 185
Query: 304 NSEGS 308
           NS G+
Sbjct: 186 NSAGT 190

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 12/182 (6%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVLV 286
           P+F++ P   T  +G  +   C   G P P++TW   G  + S      E D   G VL 
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 287 LNGVR-ESDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSSV 340
           +  +R + D  +Y C A NS G   + A + +          P + + P       G + 
Sbjct: 68  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTA 127
Query: 341 EIPCKPDGEPLPRISWSKDEAEF---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
            + C   G P P ISW KD         +   K  R+G+L++ +    D G Y C A+N 
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNS 187
Query: 398 LG 399
            G
Sbjct: 188 AG 189

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYN 381
           P  V  P D    +G      C+  GEP PRI+W K   +    R   I    G+  +  
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 382 IGP----QDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
           I P    +D  +Y CTA+N LGE      L+V  E+ +
Sbjct: 68  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQL 105

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 115/292 (39%), Gaps = 23/292 (7%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRNHKIH------R 189
           R  ++ + P       G S    C+  G+   + ISW     E +     +I        
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA---PPIFIQRPVSTTYSTGST 246
           + +L +YN    D+G+Y+C  +    ED  +   TV        +F   P    +  G  
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVT---AEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117
Query: 247 SRITCLVEGHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304
           + I C V     P + W H G    L  D       + + L + G++++D G Y C  + 
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRI 176
Query: 305 SEGSAESVAMIRINGHRAPRLVVKPFDMRAPA--GSSVEIPCKPDGEPLPRISWSKD--- 359
                 +   I++  +  P +  +   + A A  G SV + C  DG P P +SW+KD   
Sbjct: 177 LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEP 236
Query: 360 -EAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            E E  +D  H      S L + N+   D   Y C A N  GE  A  +L V
Sbjct: 237 IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEH 280
           +T   P F Q   S     GST+     + G P+P+++WF DG  + +       +++  
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSS 339
               L +  V ++++G Y+  A N  G A S A + +    A P  V +   M    GS 
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 396
           V +  +  G P P + + +D AE     + +I + G   SL +    P+DSG Y   A+N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 397 LLGEDVAEGYLTV 409
            +G   +   L V
Sbjct: 181 SVGRATSTAELLV 193

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGS 192
            G   P  +  P D    +G      C+  GEP PRI+W K   +    R   I    G+
Sbjct: 2   TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 61
Query: 193 LRLYNIGP----QDSGLYRCTASNLLGEDVAEGYLTV---TGAPPIFIQ---RPVSTTYS 242
             +  I P    +D  +Y CTA+N LGE      L+V      PP F      P      
Sbjct: 62  GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVE 121
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYN 299
              T+ + C   G+P P+++WF D   +D   S+  +     G  L +    ESD G Y 
Sbjct: 122 KARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSG-ALQIESSEESDQGKYE 180
Query: 300 CVAQNSEGS 308
           CVA NS G+
Sbjct: 181 CVATNSAGT 189

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVLV 286
           P+FI+ P   T  +G  +   C   G P P++TW   G  + S      E D   G VL 
Sbjct: 7   PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 287 LNGVR-ESDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSSV 340
           +  +R + D  +Y C A NS G   + A + +          P + + P         + 
Sbjct: 67  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTA 126
Query: 341 EIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGLYRCTA 394
            + C   G P P ISW KD   F+       N +I   R+G+L++ +    D G Y C A
Sbjct: 127 TMLCAAGGNPDPEISWFKD---FLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVA 183
Query: 395 SNLLG 399
           +N  G
Sbjct: 184 TNSAG 188

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGS 376
            G   P  +  P D    +G      C+  GEP PRI+W K   +    R   I    G+
Sbjct: 2   TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 61
Query: 377 LRLYNIGP----QDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
             +  I P    +D  +Y CTA+N LGE      L+V  E  + P
Sbjct: 62  GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPP 106

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTG 191
           G   PR    P D    +G      C+  G+P P+I W+K   +    R   I     +G
Sbjct: 3   GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 192 S-LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVT-------GAPPIFIQRPVSTTYS 242
           S LR+  +  P+D  +Y C ASN +GE      LTV        G P I +   +     
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH------VTYEHDGFVLVLNGVRESDAG 296
           T  T+ + C   G+P P++TWF D   +D+ ++      +  E  G  L +    ESD G
Sbjct: 123 T-RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG-ALQIEQSEESDQG 180
Query: 297 VYNCVAQNSEGS 308
            Y CVA NS G+
Sbjct: 181 KYECVATNSAGT 192

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 77/188 (40%), Gaps = 19/188 (10%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVL 285
           PP F + PV  T  +G  +   C   G P P++ W   G  + +      E D   G VL
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 286 VLNGVRE-SDAGVYNCVAQNSEGS-AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE-- 341
            +  +R   D  +Y CVA N+ G  + S  +  +   + PR      DM  P    VE  
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR-GFPTIDM-GPQLKVVERT 123
Query: 342 ----IPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHR-----TGSLRLYNIGPQDSGLYR 391
               + C   G P P I+W KD       + N +I +      G+L++      D G Y 
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 392 CTASNLLG 399
           C A+N  G
Sbjct: 184 CVATNSAG 191

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTG 375
           G   PR    P D    +G      C+  G+P P+I W+K   +    R   I     +G
Sbjct: 3   GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 376 S-LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
           S LR+  +  P+D  +Y C ASN +GE      LTV  E+ +
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQI 104

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 18/190 (9%)
Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
           T  +PP+FI++PV     +G  +   C   G P P++TW   G  ++S    T E D   
Sbjct: 2   TGESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 98  GFVLVLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAP 151
           G VL +  +R   D  +Y CVAQN  G     A + +          P + + P      
Sbjct: 62  GAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVE 121
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGL 205
              +  + C   G P P I+W KD   F+       N +I   R+G L++ +    D G 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKD---FLPVDPSTSNGRIKQLRSGGLQIESSEETDQGK 178
Query: 206 YRCTASNLLG 215
           Y C ASN  G
Sbjct: 179 YECVASNSAG 188

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFV 284
           +PP+FI++PV     +G  +   C   G P P++TW   G  ++S    T E D   G V
Sbjct: 5   SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 285 LVLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGS 338
           L +  +R   D  +Y CVAQN  G     A + +          P + + P         
Sbjct: 65  LRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTR 124
Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGLYRC 392
           +  + C   G P P I+W KD   F+       N +I   R+G L++ +    D G Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKD---FLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 393 TASNLLG 399
            ASN  G
Sbjct: 182 VASNSAG 188

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 376
           G   P  + KP D    +G      C+  G+P PR++W+K   +    R   I    S  
Sbjct: 3   GESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 377 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
             LR+  +  P+D  +Y C A N  GE      LTV  E+ + P 
Sbjct: 63  AVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPG 107

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 167/403 (41%), Gaps = 81/403 (20%)
Query: 46  PIFIQRPVSTT-YSTGSTSRITCLVEGHPLPQMTWFH-DGNSL-DSDDHVTYEHDGFVLV 102
           P+F++ P +   +S  + + I C   G+P+P++ W   DG ++ D         DG  LV
Sbjct: 4   PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLV 62
Query: 103 LNGVRESD------AGVYNCVAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPA--- 152
               R  D      A VY C+A+N  GS     +I  + H RA  +V++ ++  A     
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGS-----IISRDVHVRA--VVIQSYESEADNEYV 115
Query: 153 --GSSVEIPCKP--------------DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 196
             G+SV + C+               D E   R  +  + AE   D  + +  +G L + 
Sbjct: 116 IRGNSVVMKCEIPSYVADFVFVDLWLDSE--GRNYYPNNAAE--TDGKYLVLPSGELHIR 171
Query: 197 NIGPQDS-GLYRC-TASNLLGE---DVAEGYLTVTGA-----PPI-------FIQRPVST 239
            +GP+D    Y+C T   L GE      +G L +T       P +       FI   +++
Sbjct: 172 EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELAS 231
Query: 240 TYSTGSTSRITCLVEGHPLPQMTW--FHDGNSLDS----DDHVTYEHDGFVLVLNGVRES 293
           +YS      + C+ + +P P   W  F +G +       +D V  +  G +++ + V E 
Sbjct: 232 SYS------LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVE- 283
Query: 294 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
           D+G Y CV  NS G      ++ +    + +  + P       G      C+  G P+  
Sbjct: 284 DSGKYLCVVNNSVGGESVETVLTVTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKT 341
Query: 354 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           +SW KD            H    LR+ ++  +D G+Y+C   N
Sbjct: 342 VSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRN 377

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 96
           P  IQ    TTY  G  + + C  EG P+P++TW        F +G+ SLD    V  +H
Sbjct: 2   PHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
               L +  V+ SD+G Y+C A +  G  +    + I    AP+ +       +  G+ +
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 157 EIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTAS 211
            I C     P   I W +D+         N K + TG   +  I P    D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 212 NLLGEDVAEGYLTVTGAP 229
           N +G    E  L +   P
Sbjct: 179 NHIGTRFQEYILALADVP 196

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 280
           P  IQ    TTY  G  + + C  EG P+P++TW        F +G+ SLD    V  +H
Sbjct: 2   PHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
               L +  V+ SD+G Y+C A +  G  +    + I    AP+ +       +  G+ +
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 341 EIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTAS 395
            I C     P   I W +D+         N K + TG   +  I P    D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 396 NLLGEDVAEGYLTV 409
           N +G    E  L +
Sbjct: 179 NHIGTRFQEYILAL 192

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 96
           P  IQ    TTY  G  + + C  EG P+P++TW        F +G+ SLD    V  +H
Sbjct: 2   PHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
               L +  V+ SD+G Y+C A +  G  +    + I    AP+ +       +  G+ +
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 157 EIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTAS 211
            I C     P   I W +D+         N K + TG   +  I P    D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 212 NLLGEDVAEGYLTVTGAP 229
           N +G    E  L +   P
Sbjct: 179 NHIGTRFQEYILALADVP 196

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 280
           P  IQ    TTY  G  + + C  EG P+P++TW        F +G+ SLD    V  +H
Sbjct: 2   PHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
               L +  V+ SD+G Y+C A +  G  +    + I    AP+ +       +  G+ +
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 341 EIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTAS 395
            I C     P   I W +D+         N K + TG   +  I P    D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 396 NLLGEDVAEGYLTV 409
           N +G    E  L +
Sbjct: 179 NHIGTRFQEYILAL 192

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 29/199 (14%)
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYN 299
             +T R  C   G+P P ++W  +G     +  +      H  + LV+  V  SD G Y 
Sbjct: 29  AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 300 CVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
           CV +N  GS      + +   + HR       P +  A  GS VE  CK   +  P I W
Sbjct: 89  CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 357 SKDEAEFVEDRNHKIHRTGS-------------------LRLYNIGPQDSGLYRCTASNL 397
            K     VE    K+   G+                   LRL N+  +D G Y C A+N 
Sbjct: 149 LK----HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNF 204
Query: 398 LGEDVAEGYLTVTGENSVE 416
           +G      +L+V G  + E
Sbjct: 205 IGVAEKAFWLSVHGPRAAE 223

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQ 385
           +  PA ++V   C   G P P ISW K+  EF  +  H+I      H+  SL + ++ P 
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVPS 82
Query: 386 DSGLYRCTASNLLG 399
           D G Y C   N  G
Sbjct: 83  DRGNYTCVVENKFG 96

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW--SKDEAEFVEDRNHKIHRTGSLRLYN 197
           R VV P + +   G   E+ C+    P P +SW    +E   + D    +    +L++ N
Sbjct: 6   REVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 198 IGPQDSGLYRCTAS-NLLGEDVAEGYLTVTGAPPIFI--QRPVSTTYSTGSTSRITCLVE 254
           I   D G+YRC       GE      + +   PP     Q+  + T   G     +C   
Sbjct: 64  INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 255 GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
           G P P ++WF +G  ++ ++    +     L +  +  SD G Y C A N  G  E  A 
Sbjct: 124 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 315 IRI 317
           +++
Sbjct: 184 LQV 186

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR------ESD 294
           +  G  + + C V   P P ++W +      +++  T   + F ++ N         +SD
Sbjct: 14  FKQGEDAEVVCRVSSSPAPAVSWLYH-----NEEVTTISDNRFAMLANNNLQILNINKSD 68
Query: 295 AGVYNCVAQNSEGSAESVA-------MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 347
            G+Y C     EG  E+         ++ +N   A  +  K F+  A  G  +   C+  
Sbjct: 69  EGIYRC-----EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 348 GEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGPQDSGLYRCTASNLLGEDVAE 404
           G P P ISW ++  + +E+ N K    GS   L + NI   D G Y C A+N  GED  +
Sbjct: 124 GSPEPAISWFRN-GKLIEE-NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181
Query: 405 GYLTV 409
            +L V
Sbjct: 182 AFLQV 186

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 77/201 (38%), Gaps = 30/201 (14%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
            +T R  C   G+P P ++W  +G     +  +      H  + LV+  V  SD G Y C
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 117 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
           V +N  GS      + +   + HR       P +  A  GS VE  CK   +  P I W 
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Query: 174 KDEAEFVEDRNHKIHRTGS--------------------LRLYNIGPQDSGLYRCTASNL 213
           K     VE    K+   G+                    L L+N+  +D+G Y C A N 
Sbjct: 258 K----HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS 313
Query: 214 LGEDVAEGYLTVTGAPPIFIQ 234
           +G      +L V  A    ++
Sbjct: 314 IGFSHHSAWLVVLPAEEELVE 334

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 30/192 (15%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
            +T R  C   G+P P ++W  +G     +  +      H  + LV+  V  SD G Y C
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 301 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
           V +N  GS      + +   + HR       P +  A  GS VE  CK   +  P I W 
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Query: 358 KDEAEFVEDRNHKIHRTGS--------------------LRLYNIGPQDSGLYRCTASNL 397
           K     VE    K+   G+                    L L+N+  +D+G Y C A N 
Sbjct: 258 K----HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS 313
Query: 398 LGEDVAEGYLTV 409
           +G      +L V
Sbjct: 314 IGFSHHSAWLVV 325

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQ 385
           +  PA ++V   C   G P P ISW K+  EF  +  H+I      H+  SL + ++ P 
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVPS 190
Query: 386 DSGLYRCTASNLLG 399
           D G Y C   N  G
Sbjct: 191 DRGNYTCVVENKFG 204

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 59  TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYN 115
             +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y 
Sbjct: 33  AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 116 CVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
           CV +N  GS      + +   + HR       P +     G  VE  CK   +  P I W
Sbjct: 93  CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 173 SK-----------DEAEFVEDRNHK-IHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDV 218
            K           D   +++   H  I+ + +  L L+N+   D+G Y C  SN +G+  
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212
Query: 219 AEGYLTV 225
              +LTV
Sbjct: 213 QSAWLTV 219

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYN 299
             +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y 
Sbjct: 33  AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 300 CVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
           CV +N  GS      + +   + HR       P +     G  VE  CK   +  P I W
Sbjct: 93  CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 357 SK-----------DEAEFVEDRNHK-IHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDV 402
            K           D   +++   H  I+ + +  L L+N+   D+G Y C  SN +G+  
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212
Query: 403 AEGYLTV 409
              +LTV
Sbjct: 213 QSAWLTV 219

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCV 117
           +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y CV
Sbjct: 35  NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 118 AQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWSK 174
            +N  GS      + +      R +++   P +     G  VE  CK   +  P I W K
Sbjct: 95  VENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154
Query: 175 -----------DEAEFVEDRNHK-IHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDVAE 220
                      D   +++   H  I+ + +  L L+N+   D+G Y C  SN +G+    
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 221 GYLTV 225
            +LTV
Sbjct: 215 AWLTV 219

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 245 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCV 301
           +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y CV
Sbjct: 35  NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 302 AQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
            +N  GS      + +      R +++   P +     G  VE  CK   +  P I W K
Sbjct: 95  VENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154
Query: 359 -----------DEAEFVEDRNHK-IHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDVAE 404
                      D   +++   H  I+ + +  L L+N+   D+G Y C  SN +G+    
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 405 GYLTV 409
            +LTV
Sbjct: 215 AWLTV 219

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 22/191 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
             T +  C   G P P + W  +G     D  +      +  + ++++ V  SD G Y C
Sbjct: 31  AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
           + +N  GS      + +      R +++   P +     GS+VE  CK   +P P I W 
Sbjct: 91  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 174 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           K           D   +V+       N        L L N+  +D+G Y C A N +G  
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 218 VAEGYLTVTGA 228
               +LTV  A
Sbjct: 211 HHSAWLTVLEA 221

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
             T +  C   G P P + W  +G     D  +      +  + ++++ V  SD G Y C
Sbjct: 31  AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
           + +N  GS      + +      R +++   P +     GS+VE  CK   +P P I W 
Sbjct: 91  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 358 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
           K           D   +V+       N        L L N+  +D+G Y C A N +G  
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 402 VAEGYLTV 409
               +LTV
Sbjct: 211 HHSAWLTV 218

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 22/191 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
             T +  C   G P P + W  +G     D  +      +  + ++++ V  SD G Y C
Sbjct: 32  AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 91
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
           + +N  GS      + +      R +++   P +     GS+VE  CK   +P P I W 
Sbjct: 92  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 151
Query: 174 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           K           D   +V+       N        L L N+  +D+G Y C A N +G  
Sbjct: 152 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 211
Query: 218 VAEGYLTVTGA 228
               +LTV  A
Sbjct: 212 HHSAWLTVLEA 222

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
             T +  C   G P P + W  +G     D  +      +  + ++++ V  SD G Y C
Sbjct: 32  AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 91
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
           + +N  GS      + +      R +++   P +     GS+VE  CK   +P P I W 
Sbjct: 92  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 151
Query: 358 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
           K           D   +V+       N        L L N+  +D+G Y C A N +G  
Sbjct: 152 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 211
Query: 402 VAEGYLTV 409
               +LTV
Sbjct: 212 HHSAWLTV 219

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 22/191 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
             T +  C   G P P + W  +G     D  +      +  + ++++ V  SD G Y C
Sbjct: 31  AKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
           + +N  GS      + +      R +++   P +     GS+VE  CK   +P P I W 
Sbjct: 91  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 174 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           K           D   +V+       N        L L N+  +D+G Y C A N +G  
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 218 VAEGYLTVTGA 228
               +LTV  A
Sbjct: 211 HHSAWLTVLEA 221

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
             T +  C   G P P + W  +G     D  +      +  + ++++ V  SD G Y C
Sbjct: 31  AKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
           + +N  GS      + +      R +++   P +     GS+VE  CK   +P P I W 
Sbjct: 91  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 358 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
           K           D   +V+       N        L L N+  +D+G Y C A N +G  
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 402 VAEGYLTV 409
               +LTV
Sbjct: 211 HHSAWLTV 218

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 26  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 117 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
           V +N  GS      + +   + HR       P +     G  VE  CK   +  P I W 
Sbjct: 86  VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 218 VAEGYLTVTGAP 229
               +LTV  AP
Sbjct: 206 FHSAWLTVLPAP 217

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 26  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 301 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
           V +N  GS      + +   + HR       P +     G  VE  CK   +  P I W 
Sbjct: 86  VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 402 VAEGYLTV 409
               +LTV
Sbjct: 206 FHSAWLTV 213

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 24  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 83
Query: 117 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
           V +N  GS      + +   + HR       P +     G  VE  CK   +  P I W 
Sbjct: 84  VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 143
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 144 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Query: 218 VAEGYLTVTGAP 229
               +LTV  AP
Sbjct: 204 FHSAWLTVLPAP 215

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 24  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 83
Query: 301 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
           V +N  GS      + +   + HR       P +     G  VE  CK   +  P I W 
Sbjct: 84  VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 143
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 144 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Query: 402 VAEGYLTVTGENSVEPAPHTSRE 424
               +LTV       PAP   +E
Sbjct: 204 FHSAWLTVL------PAPGREKE 220

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 25  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 84
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
           V +N  GS      + +      R +++   P +     G  VE  CK   +  P I W 
Sbjct: 85  VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 144
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 145 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Query: 218 VAEGYLTVTGAP 229
               +LTV  AP
Sbjct: 205 FHSAWLTVLPAP 216

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 25  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 84
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
           V +N  GS      + +      R +++   P +     G  VE  CK   +  P I W 
Sbjct: 85  VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 144
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 145 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Query: 402 VAEGYLTV 409
               +LTV
Sbjct: 205 FHSAWLTV 212

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 26  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 117 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
           V +N  GS      + +   + HR       P +     G  VE  CK   +  P I W 
Sbjct: 86  VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 218 VAEGYLTVTGAP 229
               +LTV  AP
Sbjct: 206 FHSAWLTVLPAP 217

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 26  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 301 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
           V +N  GS      + +   + HR       P +     G  VE  CK   +  P I W 
Sbjct: 86  VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 402 VAEGYLTV 409
               +LTV
Sbjct: 206 FHSAWLTV 213

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 26  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
           V +N  GS      + +      R +++   P +     G  VE  CK   +  P I W 
Sbjct: 86  VVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 218 VAEGYLTVTGAP 229
               +LTV  AP
Sbjct: 206 FHSAWLTVLPAP 217

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
            +T +  C   G+P+P M W  +G     +  +      +  + L++  V  SD G Y C
Sbjct: 26  ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
           V +N  GS      + +      R +++   P +     G  VE  CK   +  P I W 
Sbjct: 86  VVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 402 VAEGYLTV 409
               +LTV
Sbjct: 206 FHSAWLTV 213

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDGFVL 101
           PP FIQ P + +   G   R+   V G P P ++W+ +G ++ SDD    +  E     L
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSA 125
           +   VR SDAG Y CVA+N  G A
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEA 88

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDGFVL 285
           PP FIQ P + +   G   R+   V G P P ++W+ +G ++ SDD    +  E     L
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSA 309
           +   VR SDAG Y CVA+N  G A
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEA 88

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 37  DLHVTVNAPPIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDH-- 91
           D+ V VN PP    R  ST  +T + S+   + C  +G P P MTW  DG  ++ +D+  
Sbjct: 3   DIQVIVNVPPSVRARQ-STMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEE 61
Query: 92  -VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
             ++ +DG  L++  V +SD   Y C+A+N  G  ++   +++
Sbjct: 62  KYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGV 290
           Q  ++ T +   +  + C  +G P P MTW  DG  ++ +D+    ++ +DG  L++  V
Sbjct: 18  QSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKV 77
Query: 291 RESDAGVYNCVAQNSEGSAESVAMIRI 317
            +SD   Y C+A+N  G  ++   +++
Sbjct: 78  DKSDEAEYICIAENKAGEQDATIHLKV 104

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
           G+PP F++RP      +G+ + + C+V G P P + W   G  L + + +++  DG    
Sbjct: 12  GSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 285 LVLNGVRESDAGVYNCVAQN 304
           L+L     +DAGVY C A+N
Sbjct: 72  LLLTAALPTDAGVYVCRARN 91

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV---KPFDMRAPAGSSVE 157
           L ++GV  SD G+Y C A +   + ++   +R+  H  P +         + A  G  V 
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV--HEKPFVAFGSGMESLVEATVGERVR 219
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           IP K  G P P I W K+      + NH I     L +  +  +D+G Y    +N + ++
Sbjct: 220 IPAKYLGYPPPEIKWYKNGIPL--ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKE 277
Query: 218 VAEGYLT-VTGAPPIFIQRPVST---TYSTGSTSRITCLVEGHPLP-QMTWF 264
                ++ V   PP   ++ + +   +Y  G+T  +TC V   P P  + W+
Sbjct: 278 KQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 329

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 124/304 (40%), Gaps = 33/304 (10%)
Query: 75  PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA-MIRI 133
           P+  +  DGN +  D    +    +++       S AG+  C A+ ++ S +S+  ++ +
Sbjct: 36  PEKRFVPDGNRISWDSKKGFTIPSYMI-------SYAGMVFCEAKINDESYQSIMYIVVV 88
Query: 134 NGHRAPRLVVKP-FDMRAPAGSSVEIPCKPDGEPLPRI--SW----SKDEAEFVEDRNHK 186
            G+R   +V+ P   +    G  + + C    E    I  +W    SK + + + +R+ K
Sbjct: 89  VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 148
Query: 187 IHRTGSLRLY-------NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
                 ++ +        +   D GLY C AS+ L       ++ V   P +     + +
Sbjct: 149 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 208
Query: 240 TY--STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 297
               + G   RI     G+P P++ W+ +G  L+S+  +     G VL +  V E D G 
Sbjct: 209 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHVLTIMEVSERDTGN 265
Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRL----VVKPFDMRAPAGSSVEIPCKPDGEPLP- 352
           Y  +  N     +   ++ +  +  P++    ++ P D     G++  + C     P P 
Sbjct: 266 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPH 324
Query: 353 RISW 356
            I W
Sbjct: 325 HIHW 328

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV---KPFDMRAPAGSSVE 341
           L ++GV  SD G+Y C A +   + ++   +R+  H  P +         + A  G  V 
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV--HEKPFVAFGSGMESLVEATVGERVR 219
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
           IP K  G P P I W K+      + NH I     L +  +  +D+G Y    +N + ++
Sbjct: 220 IPAKYLGYPPPEIKWYKNGIPL--ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKE 277

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 20/186 (10%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
            +T +  C   G+P P   W  +G     +  +      +  + L+   V  SD G Y C
Sbjct: 33  ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 92
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
           V +N  GS      + +      R +++   P +     G  VE  CK   +  P I W 
Sbjct: 93  VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 152
Query: 173 ---SKDEAEFVED--------RNHKIHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDVA 219
               K+ +++  D        ++  I+ + +  L L+N+   D+G Y C  SN +G+   
Sbjct: 153 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 212
Query: 220 EGYLTV 225
             +LTV
Sbjct: 213 SAWLTV 218

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 20/186 (10%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
            +T +  C   G+P P   W  +G     +  +      +  + L+   V  SD G Y C
Sbjct: 33  ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 92
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
           V +N  GS      + +      R +++   P +     G  VE  CK   +  P I W 
Sbjct: 93  VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 152
Query: 357 ---SKDEAEFVED--------RNHKIHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDVA 403
               K+ +++  D        ++  I+ + +  L L+N+   D+G Y C  SN +G+   
Sbjct: 153 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 212
Query: 404 EGYLTV 409
             +LTV
Sbjct: 213 SAWLTV 218

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 43  NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVL 101
           + PPI +Q P + T +   T+ + C   G PLP ++W  +G +    D   T +  G + 
Sbjct: 6   SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
           + N +R SD G Y CVA +S G     A++ + 
Sbjct: 66  IKN-LRISDTGTYTCVATSSSGETSWSAVLDVT 97

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLV 286
            PPI +Q P + T +   T+ + C   G PLP ++W  +G +    D   T +  G + +
Sbjct: 7   GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
            N +R SD G Y CVA +S G     A++ + 
Sbjct: 67  KN-LRISDTGTYTCVATSSSGETSWSAVLDVT 97

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 318 NGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTG 375
           +G   P ++++ P +       +  + CK  G+PLP ISW K+   F   D    I   G
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           +L++ N+   D+G Y C A++  GE      L VT
Sbjct: 63  TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 102/271 (37%), Gaps = 38/271 (14%)
Query: 77  MTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 136
           + W+ D   +  D+   ++     L++    + DAG+Y  + ++  G  +S   +++   
Sbjct: 39  IVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS--RLKLVDE 96
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP----------RISWSKDEAEFVEDRNHK 186
               L+++     A + + ++I    +G  L           +++WS + +        K
Sbjct: 97  AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK 156
Query: 187 IHRTGS---LRLYNIGPQDSGLY----------RCTASNLLGEDVAEGYLTVTGAPPIFI 233
              TG    L++    P D G Y               +L G+   E Y          I
Sbjct: 157 TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 216
Query: 234 QR----------PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG- 282
                       P   T   G    +TC V G P P+++W  +  +L SDDH   + +  
Sbjct: 217 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAG 276
Query: 283 --FVLVLNGVRESDAGVYNCVAQNSEGSAES 311
                 +NGV  +D+G Y  V +N  GS  S
Sbjct: 277 RTAYFTINGVSTADSGKYGLVVKNKYGSETS 307

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 107/294 (36%), Gaps = 42/294 (14%)
Query: 155 SVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASN 212
           +V + CK  + +    I W KDE E   D  H       +L +     +D+G+Y     +
Sbjct: 23  NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKD 82
Query: 213 LLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP----------QMT 262
             G+D +   L       + ++       S  +  +I    EG  L           ++ 
Sbjct: 83  DRGKDKSRLKLVDEAFKELMMEVCKKIALS-ATDLKIQSTAEGIQLYSFVTYYVEDLKVN 141
Query: 263 WFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING- 319
           W H+G+++   D V     G    L +N    +D G Y  V +  +G       + ++G 
Sbjct: 142 WSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY--VMELFDGKTGHQKTVDLSGQ 199
Query: 320 --------------------HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
                               +RA  L   P  +    G ++ + C   G+P P +SW K+
Sbjct: 200 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN 259
Query: 360 EAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           E     D +  +     RT    +  +   DSG Y     N  G + ++  ++V
Sbjct: 260 EKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVR 107
           PV  T S G   ++ C VEG   P + W  DG  + + D     V+ +H    L L  V 
Sbjct: 9   PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 108 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL 167
            SDAG Y C  ++  G  E    + +     P   V+P D+  P  +  ++ C+  G P 
Sbjct: 69  RSDAGRYWCQVEDG-GETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE 127
Query: 168 P-RISW 172
           P  I W
Sbjct: 128 PVTIVW 133

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVR 291
           PV  T S G   ++ C VEG   P + W  DG  + + D     V+ +H    L L  V 
Sbjct: 9   PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL 351
            SDAG Y C  ++  G  E    + +     P   V+P D+  P  +  ++ C+  G P 
Sbjct: 69  RSDAGRYWCQVEDG-GETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE 127
Query: 352 P-RISW 356
           P  I W
Sbjct: 128 PVTIVW 133

>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
           G+PP F++ P      +G+ + + C+V G P P + W   G  L + + +++  DG    
Sbjct: 12  GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 285 LVLNGVRESDAGVYNCVAQN 304
           L+L     +DAGVY C A+N
Sbjct: 72  LLLTAALPTDAGVYVCRARN 91

>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 107

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
           G+PP F++ P      +G+ + + C+V G P P + W   G  L + + +++  DG    
Sbjct: 11  GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 70
Query: 285 LVLNGVRESDAGVYNCVAQN 304
           L+L     +DAGVY C A+N
Sbjct: 71  LLLTAALPTDAGVYVCRARN 90

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 43  NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
           + PP+  Q PV+ T +   T  ++C+  G P+P + W  DG  + + D    + +  VL 
Sbjct: 6   SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ 65
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD 147
           +   +  D G Y C+A    G A   A I +     P    +P D
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
           +  PP+  Q PV+ T +   T  ++C+  G P+P + W  DG  + + D    + +  VL
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD 331
            +   +  D G Y C+A    G A   A I +     P    +P D
Sbjct: 65  QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGD--LHVTVNAPPIFIQRPVSTTYSTGSTS 63
           SS+ +  S V R+  G Y+C+     G   G+  +H+TV  PP      V ++ + G+ +
Sbjct: 63  SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRA 122
Query: 64  RITCLV-EGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFV-------LVLNGVRESDAG 112
            +TC   +G P  + +WF DG S+   D+     + +  F        L+ + V   D+G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 113 VYNCVAQNSEGSA 125
            Y C AQN  G+A
Sbjct: 183 EYYCQAQNGYGTA 195

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-------NHKI---------HRT 190
           D++ P   S+++ C   G   PR+ W     +FV+         N +I           +
Sbjct: 10  DVQVPENESIKLTCTYSGFSSPRVEW-----KFVQGSTTALVCYNSQITAPYADRVTFSS 64
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEG--YLTVTGAPPIFIQRPVSTTYSTGSTSR 248
             +   ++  +D+G Y C  S   G++  E   +LTV   PP      V ++ + G+ + 
Sbjct: 65  SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL-VPPSKPTISVPSSVTIGNRAV 123
Query: 249 ITCLV-EGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFV-------LVLNGVRESDAGV 297
           +TC   +G P  + +WF DG S+   D+     + +  F        L+ + V   D+G 
Sbjct: 124 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE 183
Query: 298 YNCVAQNSEGSA 309
           Y C AQN  G+A
Sbjct: 184 YYCQAQNGYGTA 195

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 17/192 (8%)
Query: 51  RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 105
           R ++  Y + +T  + C V GHP P + W+  G  + +D  + Y    F      L++  
Sbjct: 12  RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 68
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
           V + DA VY   A N  GS    A + +        P+ +     + A  G  V I    
Sbjct: 69  VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 163 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 217
            G+P P I+W K + + +++  H    + R+ +  ++   +  +D+G Y   A N  G D
Sbjct: 129 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187
Query: 218 VAEGYLTVTGAP 229
                L V   P
Sbjct: 188 QKTVELDVADVP 199

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 289
           R ++  Y + +T  + C V GHP P + W+  G  + +D  + Y    F      L++  
Sbjct: 12  RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 68
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
           V + DA VY   A N  GS    A + +        P+ +     + A  G  V I    
Sbjct: 69  VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 347 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 401
            G+P P I+W K + + +++  H    + R+ +  ++   +  +D+G Y   A N  G D
Sbjct: 129 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 51  RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 105
           R ++  Y + +T  + C V GHP P + W+  G  + +D  + Y    F      L++  
Sbjct: 10  RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 66
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
           V + DA VY   A N  GS    A + +        P+ +     + A  G  V I    
Sbjct: 67  VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 126
Query: 163 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 217
            G+P P I+W K + + +++  H    + R+ +  ++   +  +D+G Y   A N  G D
Sbjct: 127 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 185

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 289
           R ++  Y + +T  + C V GHP P + W+  G  + +D  + Y    F      L++  
Sbjct: 10  RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 66
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
           V + DA VY   A N  GS    A + +        P+ +     + A  G  V I    
Sbjct: 67  VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 126
Query: 347 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 401
            G+P P I+W K + + +++  H    + R+ +  ++   +  +D+G Y   A N  G D
Sbjct: 127 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 185

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 51  RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 105
           R ++  Y + +T  + C V GHP P + W+  G  + +D  + Y    F      L++  
Sbjct: 12  RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 68
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
           V + DA VY   A N  GS    A + +        P+ +     + A  G  V I    
Sbjct: 69  VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 163 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 217
            G+P P I+W K + + +++  H    + R+ +  ++   +  +D+G Y   A N  G D
Sbjct: 129 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 289
           R ++  Y + +T  + C V GHP P + W+  G  + +D  + Y    F      L++  
Sbjct: 12  RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 68
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
           V + DA VY   A N  GS    A + +        P+ +     + A  G  V I    
Sbjct: 69  VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 347 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 401
            G+P P I+W K + + +++  H    + R+ +  ++   +  +D+G Y   A N  G D
Sbjct: 129 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 58  STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 114
           S G +   TC   G P   + W++  G  + S   V  + +G    L +      DAG+Y
Sbjct: 15  SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 73
Query: 115 NCVAQNSEG-SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
            C A +++G + E+  ++ I      R VV P + +   G   E+ C+    P P +SW 
Sbjct: 74  RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWL 131
Query: 173 -SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
              +E   + D    +    +L++ NI   D G+YRC
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 168

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 298
           S G +   TC   G P   + W++  G  + S   V  + +G    L +      DAG+Y
Sbjct: 15  SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 73
Query: 299 NCVAQNSEG-SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
            C A +++G + E+  ++ I      R VV P + +   G   E+ C+    P P +SW 
Sbjct: 74  RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWL 131
Query: 357 -SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 392
              +E   + D    +    +L++ NI   D G+YRC
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 168

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
           + + +   + A P FI +P  T    G ++   C V     P +TW  D   L       
Sbjct: 365 IRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 424
Query: 278 YEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD--MR 333
             ++G  + L +N V+  D G Y   A+NS G+ E +  + +  H  P L  +P +   +
Sbjct: 425 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP-LKFEPLEPMKK 483
Query: 334 APAGSSVE 341
           AP+   VE
Sbjct: 484 APSPPRVE 491

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 22/191 (11%)
Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
            +T +  C   G+P P   W  +G     +  +      +  + L+   V  SD G Y C
Sbjct: 26  ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 85
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
           V +N  GS      + +      R +++   P +     G  VE  CK   +  P I W 
Sbjct: 86  VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 218 VAEGYLTVTGA 228
               +LTV  A
Sbjct: 206 FHSAWLTVLPA 216

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
            +T +  C   G+P P   W  +G     +  +      +  + L+   V  SD G Y C
Sbjct: 26  ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 85
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
           V +N  GS      + +      R +++   P +     G  VE  CK   +  P I W 
Sbjct: 86  VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
               K+ +++  D             N        L + N+  +D+G Y C A N +G  
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 402 VAEGYLTV 409
               +LTV
Sbjct: 206 FHSAWLTV 213

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIHRT---------GSLRL 195
           ++R P  + V++ C   G   PR+ W  D+ +       N+KI  +           +  
Sbjct: 13  EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF 72
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLT-VTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
            ++  +D+G Y C  S   G    E  +  +   PP      + ++ + G+ + +TC  +
Sbjct: 73  KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQ 132
Query: 255 -GHPLPQMTWFHDGNSLDSDDHVT--YEHDGFV-------LVLNGVRESDAGVYNCVAQN 304
            G P  + TWF DG  + ++   T  + +  +V       LV + +  SD G Y+C A+N
Sbjct: 133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192
Query: 305 SEGSAESVAMIRI 317
             G+  +   +R+
Sbjct: 193 GYGTPMTSNAVRM 205

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 56  TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 115
           T S G +  ++C   G+P PQ+ WF D  +L  D  +  +     L +  VR+ D G+Y 
Sbjct: 21  TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 80
Query: 116 CVAQNSEGSAESVAMIRING 135
           C A +  G A+  A   I G
Sbjct: 81  CQACSVLGCAKVEAFFIIEG 100

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 299
           T S G +  ++C   G+P PQ+ WF D  +L  D  +  +     L +  VR+ D G+Y 
Sbjct: 21  TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 80
Query: 300 CVAQNSEGSAESVAMIRING 319
           C A +  G A+  A   I G
Sbjct: 81  CQACSVLGCAKVEAFFIIEG 100

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCTAS 395
           G S+E+ C   G P P+I W KD    VED    +     +L +  +  +D GLY C A 
Sbjct: 25  GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 396 NLLGEDVAEGYLTVTG 411
           ++LG    E +  + G
Sbjct: 85  SVLGCAKVEAFFIIEG 100

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGF 283
           +G  P F+Q P   T   G   R+ C V G P P ++W  DG  +  DS   +    +G 
Sbjct: 6   SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 284 -VLVLNGVRESDAGVYNCVAQNSEG 307
             L++  V   DAG+Y C+A N  G
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAG 90

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLR 378
           P  +  P D+    G    + CK  G P P +SW  D      D  HK+    +   SL 
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
           +  +  +D+G+Y C A+N  G++     L V  + S
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49  IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGV 106
           + +P S T   G ++R +C  +G P+P +TW   G  L +     VT         ++ V
Sbjct: 18  LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 77
Query: 107 RESDAGVYNCVAQNSEGSAES 127
           + SD G Y+ V +NSEG  E+
Sbjct: 78  QASDEGNYSVVVENSEGKQEA 98

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGV 290
           + +P S T   G ++R +C  +G P+P +TW   G  L +     VT         ++ V
Sbjct: 18  LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 77
Query: 291 RESDAGVYNCVAQNSEGSAES 311
           + SD G Y+ V +NSEG  E+
Sbjct: 78  QASDEGNYSVVVENSEGKQEA 98

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 378
           A R++ KP  M    G S    C  DGEP+P ++W +          H++  T    +  
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           + ++   D G Y     N  G+  AE  LT+
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49  IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGV 106
           + +P S T   G ++R +C  +G P+P +TW   G  L +     VT         ++ V
Sbjct: 12  LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 71
Query: 107 RESDAGVYNCVAQNSEGSAES 127
           + SD G Y+ V +NSEG  E+
Sbjct: 72  QASDEGNYSVVVENSEGKQEA 92

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGV 290
           + +P S T   G ++R +C  +G P+P +TW   G  L +     VT         ++ V
Sbjct: 12  LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 71
Query: 291 RESDAGVYNCVAQNSEGSAES 311
           + SD G Y+ V +NSEG  E+
Sbjct: 72  QASDEGNYSVVVENSEGKQEA 92

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 378
           + R++ KP  M    G S    C  DGEP+P ++W +          H++  T    +  
Sbjct: 8   SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           + ++   D G Y     N  G+  AE  LT+
Sbjct: 68  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GF 99
           +++ P+ +     TT S+ S ++      G P P   W  DG ++          D  GF
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
            L ++    SD+G+Y C  +NS GS  S   + I
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVL 285
           + P+ +     TT S+ S ++      G P P   W  DG ++          D  GF L
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            ++    SD+G+Y C  +NS GS  S   + I
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 29/176 (16%)
Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 111
           P S     G   ++ C   GHP  Q  WF     + + +  T E     L+ N V   DA
Sbjct: 25  PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--TSE-----LIFNAVHVKDA 77
Query: 112 GVYNCVAQN------SEGSAESVAMIRINGHRAP--------RLVVKPFDMRAPAGSSVE 157
           G Y C   N      S+ S   V  I  +  R+         ++ V+P   +   GS++ 
Sbjct: 78  GFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLV 137
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY-NIGPQDSGLYRCTASN 212
           + C   G P+P   W K+E           H T  L +   +  +  G Y C   N
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLT-------HETKKLYMVPYVDLEHQGTYWCHVYN 186

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 29/176 (16%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 295
           P S     G   ++ C   GHP  Q  WF     + + +  T E     L+ N V   DA
Sbjct: 25  PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--TSE-----LIFNAVHVKDA 77
Query: 296 GVYNCVAQN------SEGSAESVAMIRINGHRAP--------RLVVKPFDMRAPAGSSVE 341
           G Y C   N      S+ S   V  I  +  R+         ++ V+P   +   GS++ 
Sbjct: 78  GFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLV 137
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY-NIGPQDSGLYRCTASN 396
           + C   G P+P   W K+E           H T  L +   +  +  G Y C   N
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLT-------HETKKLYMVPYVDLEHQGTYWCHVYN 186

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---------DMRAP 151
           L +  V  SD G Y+C   +S    +SV    I     P    KP+         D+ A 
Sbjct: 68  LYIANVEASDKGNYSCFV-SSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTA 210
            G +V + C   G P+P I W K           +I  +G+ L+++NI  +D G+Y C A
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPM--PSTAEISTSGAVLKIFNIQLEDEGIYECEA 184
Query: 211 SNLLGEDVAEGYLTVTG 227
            N+ G+D  +  + V  
Sbjct: 185 ENIRGKDKHQARIYVQA 201

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---------DMRAP 335
           L +  V  SD G Y+C   +S    +SV    I     P    KP+         D+ A 
Sbjct: 68  LYIANVEASDKGNYSCFV-SSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTA 394
            G +V + C   G P+P I W K           +I  +G+ L+++NI  +D G+Y C A
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPM--PSTAEISTSGAVLKIFNIQLEDEGIYECEA 184
Query: 395 SNLLGEDVAEGYLTVTG 411
            N+ G+D  +  + V  
Sbjct: 185 ENIRGKDKHQARIYVQA 201

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----GSL 193
           AP +V  P D+    G + E+ C+     L  +SW       +    +K+       G+L
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
              N+  QD+G+Y C  SN +G   A   L VTG 
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGT 434

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----GSL 377
           AP +V  P D+    G + E+ C+     L  +SW       +    +K+       G+L
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
              N+  QD+G+Y C  SN +G   A   L VTG
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
           E+VAE    V    P F +  +      GS +R  C VEG+P P++ WF D N +    H
Sbjct: 31  EEVAEEKPHVK---PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH 87
Query: 276 --VTYEHDGFV-LVLNGVRESDAGVYNCVAQNSEGSAESVA 313
             + Y+ +G   L ++ V   D   Y C A NS G A   A
Sbjct: 88  FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 303 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
           +N +   E VA  +   H  P       DM    GS+    CK +G P P + W KD+  
Sbjct: 24  ENEDAFLEEVAEEK--PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
Query: 363 FVEDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             E R+ +I        SL +  +   D   Y C A N LGE      L V
Sbjct: 82  VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
           E+VAE    V    P F +  +      GS +R  C VEG+P P++ WF D N +    H
Sbjct: 31  EEVAEEKPHVK---PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH 87
Query: 276 --VTYEHDGFV-LVLNGVRESDAGVYNCVAQNSEGSAESVA 313
             + Y+ +G   L ++ V   D   Y C A NS G A   A
Sbjct: 88  FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 303 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
           +N +   E VA  +   H  P       DM    GS+    CK +G P P + W KD+  
Sbjct: 24  ENEDAFLEEVAEEK--PHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
Query: 363 FVEDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             E R+ +I        SL +  +   D   Y C A N LGE      L V
Sbjct: 82  VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex Length = 339

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 101/258 (39%), Gaps = 31/258 (12%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI--SWSK-DEAEF 179
           G+A S      +  R  RL  +P  +R P     ++P        PRI  +W K D A  
Sbjct: 13  GAARSCRFRGRHYKREFRLEGEPVALRCP-----QVPYWLWASVSPRINLTWHKNDSART 67
Query: 180 V--EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV---TGAPPIFIQ 234
           V  E+      + G+L L     +DSG Y CT  N    D     L V   T A   FI 
Sbjct: 68  VPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFIS 127
Query: 235 RPVSTTYSTGSTSRITC-----LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-LVLN 288
            P   T ST     + C             ++ W+ D   LD D+       G   L+++
Sbjct: 128 YPQILTLSTSGV--LVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVH 185
Query: 289 GVRESDAGVYNCVAQNS-EGSAESVAM---IRINGHRAPRL--VVKPFD-MRAPAGSSVE 341
            V   DAG Y CV   + EG   ++     +RI   +   +  ++ P   + A  GS + 
Sbjct: 186 DVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLT 245
Query: 342 IPCKP---DGEPLPRISW 356
           IPCK     G PL  + W
Sbjct: 246 IPCKVFLGTGTPLTTMLW 263

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
           G L     PP  ++ P     S G  + + C  EG P P + W+  G  +++D      H
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 281 DG--------FVLVLNGVRES-DAGVYNCVAQNSEGSAES 311
                     F+ +++G +   D GVY CVA+N  G A S
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHR----TGSL 377
           PR+V  P D+    G    + CK +G P P I W K       D++  + HR    +GSL
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 378 RLYNI-----GPQDSGLYRCTASNLLGEDVA 403
               I        D G+Y C A N LGE V+
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
           + + +   + A P FI +P  T    G ++   C V     P +TW  D   L       
Sbjct: 471 IRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 530
Query: 278 YEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
             ++G  + L +N V+  D G Y   A+NS G+ E +  + +
Sbjct: 531 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRE 108
           P   T   G    +TC V G P P+++W  +  +L   DH   + +        +NGV  
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST 183
Query: 109 SDAGVYNCVAQNSEGSAES 127
           +D+G Y  V +N  GS  S
Sbjct: 184 ADSGKYGLVVKNKYGSETS 202

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRE 292
           P   T   G    +TC V G P P+++W  +  +L   DH   + +        +NGV  
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST 183
Query: 293 SDAGVYNCVAQNSEGSAES 311
           +D+G Y  V +N  GS  S
Sbjct: 184 ADSGKYGLVVKNKYGSETS 202

>pdb|2X7L|L Chain L, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a Resolution For Multimeric Binding To The Rev Response Element Length = 217

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 6   SSTE--LVISGVQREHGGRYSCVAGNPAGVYR------GDLHV--TVNAPPIFIQRPVST 55
           S TE  L ISGVQRE    Y C+ G PA  YR       +L +  TV AP +FI  P   
Sbjct: 67  SGTEYTLTISGVQREDAATYYCLGGYPAASYRTAFGGGTELEIIRTVAAPSVFIFPPSDE 126
Query: 56  TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS 88
              +G+ S +  L   +P      +   N+L S
Sbjct: 127 QLKSGTASVVCLLNNFYPREAKVQWKVDNALQS 159

>pdb|3F9P|A Chain A, Crystal Structure Of Myeloperoxidase From Human Leukocytes Length = 114

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 24/39 (61%)
Query: 668 KYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTP 706
           KYRTI G CNN + P  GAS   F R L   YE+GFS P
Sbjct: 8   KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLP 46

>pdb|1MYP|A Chain A, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3 Angstroms Resolution Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 24/39 (61%)
Query: 668 KYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTP 706
           KYRTI G CNN + P  GAS   F R L   YE+GFS P
Sbjct: 8   KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLP 46

>pdb|1CXP|A Chain A, Cryogenic Crystal Structure Of Human Myeloperoxidase Isoform C Length = 104

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 24/39 (61%)
Query: 668 KYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTP 706
           KYRTI G CNN + P  GAS   F R L   YE+GFS P
Sbjct: 6   KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLP 44

>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component Length = 585

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 28/183 (15%)
Query: 3   DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD----LHVTVNAPPIFIQRPVSTTYS 58
           D+  S  +VI+G+++E  GRY C A +   +  G       + VN      + P      
Sbjct: 285 DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGV 344
Query: 59  TGSTSRITCLVEGHPLPQMTWF------HDGNS---LDSDDHVTYEHDG----------- 98
            GS+  + C         + ++       +G     +DS+  V  +++G           
Sbjct: 345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNG 404
Query: 99  -FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
            F ++LN +   DAG Y C+         +V +  I G   P L V P ++ A  G +++
Sbjct: 405 TFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGE--PNLKV-PGNVTAVLGETLK 461
Query: 158 IPC 160
           +PC
Sbjct: 462 VPC 464

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 28/150 (18%)
Query: 162 PDGEPLP----RIS--WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
           P+GE L     RIS  W+ D+             + +L +YN    D+G+Y+C  +    
Sbjct: 40  PNGEKLSPNQQRISVVWNDDD-------------SSTLTIYNANIDDAGIYKCVVT---A 83
Query: 216 EDVAEGYLTVTGA---PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS--L 270
           ED  +   TV        +F   P    +  G  + I C V     P + W H G    L
Sbjct: 84  EDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL 143
Query: 271 DSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
             D       + + L + G++++D G Y C
Sbjct: 144 KKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	940
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-117
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-115
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-101
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-88
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-106
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-103
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-93
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-85
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-75
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-105
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-83
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-59
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-99
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-98
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-93
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-67
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-54
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-93
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-78
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-62
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-40
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-34
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-91
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-76
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-60
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-90
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-74
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-39
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-34
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-90
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-81
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-78
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-77
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-58
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-49
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-36
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-89
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-74
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-34
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-84
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-67
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-62
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-42
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-20
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-82
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-73
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-52
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-30
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-25
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-82
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-82
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-37
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-81
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-80
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-65
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-79
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-69
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-54
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-34
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-33
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-75
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-74
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-56
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-73
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-73
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-60
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-44
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-72
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-64
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-58
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-68
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-65
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-53
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-40
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-63
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-61
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-52
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-38
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-15
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-59
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-54
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-52
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-57
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-40
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-38
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-32
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-31
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	8e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-56
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-54
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-44
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	7e-36
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-24
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-56
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-50
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	9e-47
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-29
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-53
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-52
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-51
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-34
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-20
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-51
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-51
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-48
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-33
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-51
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-30
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-51
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-47
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-26
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-07
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-50
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-50
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-47
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-32
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-19
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-05
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-50
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-49
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-40
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-32
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-19
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-12
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-50
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-48
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-48
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-30
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-20
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-49
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-48
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-40
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-30
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-21
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-48
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-46
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-45
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-28
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-20
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-48
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-48
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	9e-48
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-33
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-18
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-05
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-48
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-48
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-46
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-31
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-48
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-45
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-44
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-27
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-48
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-48
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-45
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-30
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-05
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-47
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-44
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-42
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-22
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-20
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-47
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-43
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-40
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-46
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-46
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	8e-27
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-46
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-44
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-40
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-30
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-46
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-45
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-26
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-05
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-45
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-44
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-41
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-25
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-45
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-41
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-31
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-45
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-40
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-36
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-27
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-21
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-44
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-42
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-40
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-27
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-17
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-44
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-43
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-43
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-31
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-18
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-43
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-42
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-34
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-43
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-40
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-40
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-32
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-42
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-42
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-41
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-27
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-18
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-42
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-39
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-38
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-30
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-41
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-41
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-29
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-41
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-40
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-38
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-23
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-19
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-41
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-39
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-34
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-41
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-38
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-37
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-40
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-40
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-37
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-27
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-13
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	6e-06
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-40
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-40
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-40
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-30
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-40
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-40
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-30
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-37
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-37
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-37
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-29
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-14
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-36
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-35
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-33
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-24
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-35
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-34
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-33
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-20
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-34
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-28
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-24
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-32
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-30
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-29
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	9e-28
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-07
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-31
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-30
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-29
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-28
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-31
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-29
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-28
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-20
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-30
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-23
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-23
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-22
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-07
1d2v_C	466	Myeloperoxidase; heme-protein, oxidoreductase, per	2e-30
1d2v_C	466	Myeloperoxidase; heme-protein, oxidoreductase, per	2e-18
1d2v_C	466	Myeloperoxidase; heme-protein, oxidoreductase, per	3e-07
1d2v_C	466	Myeloperoxidase; heme-protein, oxidoreductase, per	2e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-29
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-29
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-27
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-24
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-29
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-21
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-21
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-19
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-12
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	6e-29
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-27
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-24
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-23
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-06
3q9k_A	595	Lactoperoxidase, LPO; bovine lactoperoxidase, oxid	5e-28
3q9k_A	595	Lactoperoxidase, LPO; bovine lactoperoxidase, oxid	2e-17
3q9k_A	595	Lactoperoxidase, LPO; bovine lactoperoxidase, oxid	4e-16
3q9k_A	595	Lactoperoxidase, LPO; bovine lactoperoxidase, oxid	3e-09
3q9k_A	595	Lactoperoxidase, LPO; bovine lactoperoxidase, oxid	3e-05
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-27
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-26
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-26
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	6e-26
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	8e-27
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-25
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-23
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-10
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	8e-27
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-15
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-13
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-26
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-26
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-23
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-23
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-26
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-26
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-21
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-21
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-26
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-25
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-25
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	8e-20
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-26
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-26
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-24
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-24
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-26
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-21
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-21
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-19
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-26
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-24
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-22
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-22
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-26
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-25
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-21
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-21
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-25
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-25
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-23
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-22
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-04
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-25
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	3e-24
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-23
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-23
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-25
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-20
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-20
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-17
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-11
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-25
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-25
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-24
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	9e-24
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-24
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-23
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-15
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	7e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-24
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-24
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-24
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-20
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-04
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	2e-24
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	4e-22
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	6e-08
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-24
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-24
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-22
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-21
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	9e-24
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-23
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-23
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	9e-22
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-23
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-23
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-22
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-22
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-23
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-23
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-23
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-23
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-04
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-23
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-23
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-23
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-22
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-23
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	9e-23
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-20
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	5e-20
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-23
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-21
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-20
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	9e-18
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-23
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-23
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-21
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-21
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-22
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-21
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-19
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	4e-22
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	1e-21
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	9e-08
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-22
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-20
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	6e-17
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-22
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-22
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-21
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-19
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-22
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-18
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-18
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-15
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-11
2ens_A	96	Advanced glycosylation END product-specific recept	1e-21
2ens_A	96	Advanced glycosylation END product-specific recept	4e-21
2ens_A	96	Advanced glycosylation END product-specific recept	2e-20
2ens_A	96	Advanced glycosylation END product-specific recept	9e-20
2ens_A	96	Advanced glycosylation END product-specific recept	8e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-21
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-21
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-21
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-21
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-21
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-21
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-18
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-17
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-21
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-21
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-20
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	8e-20
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-21
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-20
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-20
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-19
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-21
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-11
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-21
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-21
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-19
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-19
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-21
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-20
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-17
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-16
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-20
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-20
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-19
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-18
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-20
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-20
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	6e-18
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-18
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	6e-20
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-19
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	6e-15
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-19
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-19
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-16
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-16
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-19
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-19
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	9e-18
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-17
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-19
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-19
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	7e-18
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	9e-18
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-19
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-11
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	8e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	8e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-17
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	7e-19
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-17
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-16
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-17
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-16
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-16
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-18
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-16
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-09
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-18
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-18
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-18
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	5e-18
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	7e-18
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-17
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-13
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-12
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	9e-18
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-11
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-08
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	9e-18
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-17
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-14
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-17
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-17
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-13
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-13
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-17
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	5e-16
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-13
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	7e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-17
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-16
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-09
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-17
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-17
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-14
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-14
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-17
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-15
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-08
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-17
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-17
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-13
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-12
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-17
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	8e-17
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-16
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-16
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-17
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-16
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-15
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-11
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-16
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-16
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-11
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-16
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-16
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-13
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-13
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-16
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-15
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-16
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-16
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-15
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-15
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-16
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-14
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-14
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-14
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-16
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-16
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-13
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-13
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-16
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	9e-15
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-13
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	7e-16
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-13
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-15
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-15
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-12
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-15
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-15
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-15
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	6e-15
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-13
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-12
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-15
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-15
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-14
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-14
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-15
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-13
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
1d2v_A	104	Myeloperoxidase; heme-protein, oxidoreductase, per	1e-14
1d2v_A	104	Myeloperoxidase; heme-protein, oxidoreductase, per	1e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-14
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-14
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-09
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-14
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	4e-12
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	5e-12
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	3e-12
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	5e-12
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	8e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-11
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	7e-09
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	5e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-06
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-11
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	6e-08
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-11
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-11
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	8e-11
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-05
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-11
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	6e-07
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	6e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-11
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-11
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	8e-11
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-05
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	7e-11
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	3e-09
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-08
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	9e-11
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	9e-11
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	2e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-10
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-10
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	4e-05
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	3e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-10
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	6e-10
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-10
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-09
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	6e-10
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	8e-09
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-09
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-09
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	6e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	8e-08
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	7e-09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	7e-09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	3e-06
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	2e-04
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	9e-09
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	7e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-08
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-08
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	1e-05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	3e-08
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	7e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	4e-08
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-07
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	2e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	7e-05
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	5e-08
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	1e-07
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	8e-04
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	7e-08
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	9e-08
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	9e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-05
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	1e-07
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	5e-04
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	2e-07
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	2e-07
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	7e-06
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	2e-07
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	7e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-07
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	4e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	3e-07
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	9e-07
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	5e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	5e-04
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	4e-07
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	5e-07
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	2e-06
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	1e-05
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	4e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	2e-06
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	4e-06
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	2e-06
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	2e-06
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	2e-06
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	1e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	1e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	4e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	4e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	9e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	5e-06
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	6e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	4e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	4e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	3e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	5e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	4e-05
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	4e-05
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	5e-05
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	5e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	5e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	5e-05
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	6e-05
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	6e-05
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	6e-05
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	1e-04
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	1e-04
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	2e-04
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	2e-04
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	8e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	2e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	8e-04
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	2e-04
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	2e-04
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	2e-04
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	4e-04
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	4e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	5e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	8e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  368 bits (947), Expect = e-117
 Identities = 113/416 (27%), Positives = 182/416 (43%), Gaps = 18/416 (4%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---PPIFIQRPVSTTYSTGSTSRIT 66
           LVI+ V     G Y+C A N  G       + +     PP F ++      + G      
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 67  CLVEGHPLPQMTWFHDGNSLDSDDHV--TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           C + G    Q++W+ DG  L  D ++  ++ H+   L +    +S  G YNC A N  G+
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182

Query: 125 AESVAMIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 183
           A S A + ++     P   +KP  +    G S    C   G    +I+W+KD  E     
Sbjct: 183 ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG 242

Query: 184 NHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV-ST 239
           N+K+     T +L +  +   D+G Y C ASN+ G+D     L V   PP FI++   S 
Sbjct: 243 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSR 301

Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGV 297
                  +R  C + G P  ++ W+ D   +       +++     VL +  +   D+G 
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361

Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
           Y C A N+ GSA S   +++     P    KP  +    G+ V + C+  G P  ++SW 
Sbjct: 362 YTCEAHNAAGSASSSTSLKVKE--PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419

Query: 358 KDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           KD+ E    + +KI       S+ + N+   D G Y+C ASN +G D   G +T+ 
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  364 bits (935), Expect = e-115
 Identities = 110/415 (26%), Positives = 167/415 (40%), Gaps = 20/415 (4%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGSTSRIT 66
           L I    + H G+Y+C A NP G       +T++    PP F  +PVS   + G +    
Sbjct: 159 LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK 218

Query: 67  CLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           C V G    ++TW  D   +       +T   +   L +  V + DAG Y C A N  G 
Sbjct: 219 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278

Query: 125 AESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 183
               A + +     PR + K    R           CK  G P  ++ W KDE E  E  
Sbjct: 279 DSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS 336

Query: 184 NHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTT 240
             ++        L +YN+  +DSG Y C A N  G   +   L V   PP+F ++P    
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-EPPVFRKKPHPVE 395

Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 298
              G+   + C ++G P  Q++W  D   L S        + F+  + +  V  +D G Y
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455

Query: 299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
            C A N  GS   V  I +     PR V K  D+    G  V++    +G     ++W K
Sbjct: 456 QCKASNDVGSDTCVGSITL--KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK 513

Query: 359 DEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           D+ E V + ++          +L+     P ++G Y C   N  G       L+V
Sbjct: 514 DKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  327 bits (840), Expect = e-101
 Identities = 109/412 (26%), Positives = 167/412 (40%), Gaps = 23/412 (5%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LV 102
           PP FI+       + G    + C V+G P  ++ W+ +   L S      +    V  LV
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCK 161
           +N V  SD G Y C A+NS G+  S A++ I   +  P    K  D+    G  V   C+
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR 124

Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 218
            +G    ++SW KD     +D N +    H   +L++        G Y C+ASN LG   
Sbjct: 125 INGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS 184

Query: 219 AEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-- 274
           +   LT++    PP F  +PVS   + G +    C V G    ++TW  D   +      
Sbjct: 185 SSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY 244

Query: 275 HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR- 333
            +T   +   L +  V + DAG Y C A N  G     A + +     PR + K    R 
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSRI 302

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIGPQDSGLY 390
                     CK  G P  ++ W KDE E  E    ++        L +YN+  +DSG Y
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362

Query: 391 RCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVK 442
            C A N  G   +   L       V+  P   ++P     ++    +H+  +
Sbjct: 363 TCEAHNAAGSASSSTSLK------VKEPPVFRKKPH-PVETLKGADVHLECE 407

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  293 bits (751), Expect = 1e-88
 Identities = 81/321 (25%), Positives = 142/321 (44%), Gaps = 12/321 (3%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPV-STTYSTGSTSR 64
           ++  L +  V +   G+Y+C A N AG       + V  PP FI++   S        +R
Sbjct: 251 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 310

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
             C + G P  ++ W+ D   +       +++     VL +  +   D+G Y C A N+ 
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           GSA S   +++     P    KP  +    G+ V + C+  G P  ++SW KD+ E    
Sbjct: 371 GSASSSTSLKVKE--PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG 428

Query: 183 RNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
           + +KI       S+ + N+   D G Y+C ASN +G D   G +T+  APP F+++    
Sbjct: 429 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK-APPRFVKKLSDI 487

Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDGFVLVLNGVRESDAG 296
           +   G   ++   +EG     + WF D   +  +     ++Y  +   L  +    ++AG
Sbjct: 488 STVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547

Query: 297 VYNCVAQNSEGSAESVAMIRI 317
            Y C  +N  G+ E  A + +
Sbjct: 548 KYTCQIKNEAGTQECFATLSV 568

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  348 bits (894), Expect = e-106
 Identities = 110/423 (26%), Positives = 176/423 (41%), Gaps = 28/423 (6%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
           ++ S  L+I     E  G+Y CV  N  G    +  +TV AP      P + T   G  +
Sbjct: 302 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 361

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
             TC   G+P+  ++W  DG ++   +         VL +  V++ D G+Y C  +N   
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIGHSES--------VLRIESVKKEDKGMYQCFVRNDRE 413

Query: 124 SAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           SAE+ A +++ G    P +     +     G SV + C   G P P ISW  D  +   +
Sbjct: 414 SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN 473

Query: 183 RNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
             +++ +           L + ++   D GLY+C A + +G       L V G P  +I+
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIR 531

Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
           +        G T  +TC V G+P+  + W  D  +L  +       +G +++ N  R SD
Sbjct: 532 QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSD 591

Query: 295 AGVYNCVAQNSEG-SAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLP 352
              Y CVA+N EG SA     +++     PR++   F +  A  G  + + C   G  LP
Sbjct: 592 QATYTCVAKNQEGYSARGSLEVQVMV--LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649

Query: 353 -RISWSKDEAEFVEDRNHKIHRT----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 407
             I W+ D     ED      R       L +  +    +G + C A NL G       L
Sbjct: 650 LNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709

Query: 408 TVT 410
            V 
Sbjct: 710 NVY 712

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  340 bits (873), Expect = e-103
 Identities = 104/437 (23%), Positives = 173/437 (39%), Gaps = 32/437 (7%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---PPIFIQRPVSTTYSTGST 62
           S + L I  V++E  G Y C   N          + +     PP+  Q     T   G +
Sbjct: 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPS 446

Query: 63  SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-------LVLNGVRESDAGVYN 115
             + C+  G+P P+++W  DG  + ++D         V       L +  V  +D G+Y 
Sbjct: 447 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506

Query: 116 CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
           C+A++  G AE  A + +        + +       AG ++ + C   G P+  I W +D
Sbjct: 507 CIAKSKVGVAEHSAKLNV---YGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563

Query: 176 EAEFVEDRNHKIHRTGSLRLYNIG-PQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFI 233
                 +R  K+   G+L + N+    D   Y C A N  G        + V   P I  
Sbjct: 564 NRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIP 623

Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEH---DGFVLVLNG 289
                     G    + C V G  LP  + W  DG ++  D  +T       G VL +  
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEA 683

Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE 349
           V  S AG + C A+N  G  +    + +  +  PR +++P D     GS  ++ CK DG 
Sbjct: 684 VEASHAGNFTCHARNLAGHQQFTTPLNV--YVPPRWILEPTDKAFAQGSDAKVECKADGF 741

Query: 350 PLPRISWSKDEAEFVED------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
           P P+++W K   +   +       ++     G+L + NI   + G Y C A N +G  ++
Sbjct: 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLS 801

Query: 404 EGYLTVTGENSVEPAPH 420
              +       V+   H
Sbjct: 802 AVIMIS-----VQAHHH 813

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  313 bits (803), Expect = 1e-93
 Identities = 99/441 (22%), Positives = 168/441 (38%), Gaps = 49/441 (11%)

Query: 10  LVISGVQRE------HGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
           LV    + E      H   Y+C+A N  G +   D+HV       +           G++
Sbjct: 96  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 155

Query: 63  SRITCLVE---GHPLPQMTWFHDGNSL-----DSDDHVTYEHDGFVLVLNGVRESDA-GV 113
           + I CL+       +  ++W  D         + D        G  L +  V   D    
Sbjct: 156 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREVGPEDGYKS 214

Query: 114 YNCVAQNSEGSAES--------VAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPCKPDG 164
           Y C  ++               V    I+      + +  FDM+     S++ + C   G
Sbjct: 215 YQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQG 274

Query: 165 EPLPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
            P+P   W K        +   ++      +G+L + +   +DSG Y C  +N +G +  
Sbjct: 275 YPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 334

Query: 220 EGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE 279
           E  LTVT AP      P + T   G  +  TC   G+P+  ++W  DG ++   +     
Sbjct: 335 ETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---- 389

Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGS 338
               VL +  V++ D G+Y C  +N   SAE+ A +++ G    P +     +     G 
Sbjct: 390 ----VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGP 445

Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIGPQDSGLY 390
           SV + C   G P P ISW  D  +   +  +++ +           L + ++   D GLY
Sbjct: 446 SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY 505

Query: 391 RCTASNLLGEDVAEGYLTVTG 411
           +C A + +G       L V G
Sbjct: 506 KCIAKSKVGVAEHSAKLNVYG 526

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  291 bits (746), Expect = 1e-85
 Identities = 88/450 (19%), Positives = 153/450 (34%), Gaps = 46/450 (10%)

Query: 10  LVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFIQRPVSTTY-STGSTSRIT 66
           + +   + +    ++ VA    G      +        P+F++ P +    S  + + I 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 67  CLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESD------AGVYNCVAQ 119
           C   G+P+P++ W   DG ++     +        LV    R  D      A VY C+A+
Sbjct: 61  CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120

Query: 120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP---DGEPLPRISWSKDE 176
           N  GS  S   + +    A              G+S  I C       + +  +SW  DE
Sbjct: 121 NQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDE 179

Query: 177 AEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GLYRCTASNLLGED----------VAE 220
            E        D  + +  +G L +  +GP+D    Y+C   + L  +          V  
Sbjct: 180 EENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 239

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
             ++      + + +    TYS  ST  + C  +G+P+P   W+           V    
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299

Query: 281 ----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 336
                   L++      D+G Y CV  NS G      ++ +         + P       
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF 357

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           G      C+  G P+  +SW KD                 LR+ ++  +D G+Y+C   N
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRN 410

Query: 397 LLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
                 A   L + G       P   +   
Sbjct: 411 DRESAEASAELKLGG---RFDPPVIRQAFQ 437

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  262 bits (672), Expect = 3e-75
 Identities = 89/333 (26%), Positives = 140/333 (42%), Gaps = 17/333 (5%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
           T +    + L I+ V    GG Y C+A +  GV      + V   P +I++        G
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQMEKKAIVAG 541

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
            T  +TC V G+P+  + W  D  +L  +       +G +++ N  R SD   Y CVA+N
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKN 601

Query: 121 SEG-SAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLP-RISWSKDEA 177
            EG SA     +++     PR++   F +  A  G  + + C   G  LP  I W+ D  
Sbjct: 602 QEGYSARGSLEVQVMV--LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQ 659

Query: 178 EFVEDRNHKIHRT----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI 233
              ED      R       L +  +    +G + C A NL G       L V   PP +I
Sbjct: 660 AISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY-VPPRWI 718

Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLN 288
             P    ++ GS +++ C  +G P PQ+TW         +     + D        L ++
Sbjct: 719 LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVD 778

Query: 289 GVRESDAGVYNCVAQNSEGSAES-VAMIRINGH 320
            +++++ G Y C A N  GS  S V MI +  H
Sbjct: 779 NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  332 bits (852), Expect = e-105
 Identities = 92/408 (22%), Positives = 158/408 (38%), Gaps = 23/408 (5%)

Query: 27  AGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNS 85
            G+         H        F+  P       G    + C  E    +P + W  DG  
Sbjct: 3   WGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62

Query: 86  LD--SDDHVTYEHDGFVLVLN----GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
           L    DD      +G +L+ N       + D G+Y C A   +  +      ++      
Sbjct: 63  LALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL 122

Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA---EFVEDRNHKIHRTGSLRLY 196
           R + +   + A  G +V + C+  G+P+P I W K++        D    +  +G+L++ 
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQIS 182

Query: 197 NIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGAP-----PIFIQRPVSTTYSTGSTSRIT 250
            + P DSG+YRC+A N        E  + +   P       F+QRP +     G  + + 
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE 242

Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
           C V G+P P  TW      +           G  L+++ V + D+G Y CV      +  
Sbjct: 243 CCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENIS 302

Query: 311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 370
           + A + +     P  +  P ++ A     +E  C   G+P+P ++W K+    +     +
Sbjct: 303 ASAELTV--LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ 360

Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
           I    +LR+  +   D G Y+C A N  G   +   L V      +PA
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP-----KPA 403

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  272 bits (698), Expect = 4e-83
 Identities = 83/322 (25%), Positives = 132/322 (40%), Gaps = 14/322 (4%)

Query: 8   TELVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
             ++ S   +   G Y C A       +      V V  P  F+ +  S T   G T  +
Sbjct: 82  QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLL 141

Query: 66  TCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
            C V G P+P + W  +   L+    D  V     G  L ++ ++  D+GVY C A+N  
Sbjct: 142 KCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG-ALQISRLQPGDSGVYRCSARNPA 200

Query: 123 GSAESV-AMIRING----HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177
            +     A +RI      HR    + +P ++ A  G    + C   G P P  +W + E 
Sbjct: 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEE 260

Query: 178 EF-VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP 236
              +  + + +    +L + N+   DSG Y C  +       A   LTV   PP F+  P
Sbjct: 261 VIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-VPPWFLNHP 319

Query: 237 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAG 296
            +            C V G P+P + W  +G+ +   D+         L + GV +SD G
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS-NLRILGVVKSDEG 378

Query: 297 VYNCVAQNSEGSAESVAMIRIN 318
            Y CVA+N  G+A+S A + + 
Sbjct: 379 FYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  206 bits (527), Expect = 4e-59
 Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 1   TDDRR----SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPP------IFI 49
             D R     S  L IS +Q    G Y C A NPA      +  V + + P       F+
Sbjct: 166 PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFL 225

Query: 50  QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 109
           QRP +     G  + + C V G+P P  TW      +           G  L+++ V + 
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD 285

Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 169
           D+G Y CV      +  + A + +     P  +  P ++ A     +E  C   G+P+P 
Sbjct: 286 DSGTYTCVVTYKNENISASAELTV--LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT 343

Query: 170 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
           ++W K+    +     +I    +LR+  +   D G Y+C A N  G   +   L V 
Sbjct: 344 VNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
           L I GV +   G Y CVA N AG  +    + V  P
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  323 bits (828), Expect = 6e-99
 Identities = 94/439 (21%), Positives = 140/439 (31%), Gaps = 29/439 (6%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYR---GDLHVTVNAPPIFIQRPVSTTYSTGST 62
            +  L+I  + +   G Y+        V     G   V    P   I    S        
Sbjct: 69  PNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128

Query: 63  SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
              TC  E        W+ +  SL     +   +    L L  V  +D   Y C  QN  
Sbjct: 129 VAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV 187

Query: 123 GSAESVAMIRINGHRAP-RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
            +  S + + +N    P    + P +    +G ++ + C     P  + SW  +      
Sbjct: 188 SARRSDS-VILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN------ 240

Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED--VAEGYLTVTGAPP-IFIQRPVS 238
                   T  L + NI   +SG Y C A N            +TV   PP  FI    S
Sbjct: 241 --GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNS 298

Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
                     +TC  E        W+ +  SL     +   +D   L L  V  +D G Y
Sbjct: 299 NPVEDEDAVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY 357

Query: 299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
            C  QN      S  +I    +      + P       G ++ + C     P  + SW  
Sbjct: 358 ECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417

Query: 359 DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
           D         +    T  L + NI  ++SGLY C A+N           T+T        
Sbjct: 418 D--------GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT---VSAEL 466

Query: 419 PHTSREPSASKPSVADDTI 437
           P  S   + SKP    D +
Sbjct: 467 PKPSISSNNSKPVEDKDAV 485

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  320 bits (821), Expect = 6e-98
 Identities = 92/413 (22%), Positives = 139/413 (33%), Gaps = 27/413 (6%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN----APPIFIQRPVSTTYSTGS 61
           S+ EL I  +   + G Y+C A N           T+      P  FI    S       
Sbjct: 246 STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDED 305

Query: 62  TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
              +TC  E        W+ +  SL     +   +D   L L  V  +D G Y C  QN 
Sbjct: 306 AVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNE 364

Query: 122 EGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
                S  +I    +      + P       G ++ + C     P  + SW  D      
Sbjct: 365 LSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID------ 418

Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG---APPIFIQRPVS 238
              +    T  L + NI  ++SGLY C A+N           T+T     P   I    S
Sbjct: 419 --GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNS 476

Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
                      TC  E        W+ +G SL     +   +    L L  V  +DA  Y
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTTY-LWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAY 535

Query: 299 NCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
            C  QNS  +  S    + +  +     ++ P D    +G+++ + C     P P+ SW 
Sbjct: 536 VCGIQNSVSANRSDPVTLDVL-YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWR 594

Query: 358 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            +              T  L +  I P ++G Y C  SNL          ++T
Sbjct: 595 IN--------GIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  308 bits (791), Expect = 1e-93
 Identities = 85/410 (20%), Positives = 148/410 (36%), Gaps = 28/410 (6%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGSTSRIT 66
           L +  V R     Y C   NP    R D  V +N    P      P++T+Y +G    ++
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSD-SVILNVLYGPDAPTISPLNTSYRSGENLNLS 224

Query: 67  CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
           C    +P  Q +WF +G    S            L +  +  +++G Y C A NS+    
Sbjct: 225 CHAASNPPAQYSWFVNGTFQQSTQE---------LFIPNITVNNSGSYTCQAHNSDTGLN 275

Query: 127 SVAMIRINGHRAPR--LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 184
              +  I  +  P    +            +V + C+P+ +    + W  +++  V  R 
Sbjct: 276 RTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRL 335

Query: 185 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGAPPIFIQRPVSTTYST 243
              +   +L L ++   D G Y C   N L  D ++   L V   P      P  T Y  
Sbjct: 336 QLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRP 395

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
           G    ++C    +P  Q +W  DGN                L ++ + E ++G+Y C A 
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE---------LFISNITEKNSGLYTCQAN 446

Query: 304 NSEGSAESVAMIRINGHRAPR--LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 361
           NS        +  I          +            +V   C+P+ +    + W   ++
Sbjct: 447 NSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQS 506

Query: 362 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVT 410
             V  R    +   +L L+N+   D+  Y C   N +  + ++   L V 
Sbjct: 507 LPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  236 bits (603), Expect = 3e-67
 Identities = 64/397 (16%), Positives = 129/397 (32%), Gaps = 35/397 (8%)

Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV----------- 100
                 + G    +        L   +W+       +   + Y                 
Sbjct: 6   STPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE 65

Query: 101 -------LVLNGVRESDAGVYNCVAQNSEGSAESV-AMIRINGHRAPRLVVKPFDMRAPA 152
                  L++  + ++D G Y      S+   E      R+        +          
Sbjct: 66  IIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVED 125

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
             +V   C+P+ +    + W  +++  V  R    +   +L L+N+   D+  Y+C   N
Sbjct: 126 KDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQN 185

Query: 213 LLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD 271
            +         L V   P      P++T+Y +G    ++C    +P  Q +WF +G    
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ 245

Query: 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR--LVVKP 329
           S            L +  +  +++G Y C A NS+       +  I  +  P    +   
Sbjct: 246 STQE---------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296

Query: 330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 389
                    +V + C+P+ +    + W  +++  V  R    +   +L L ++   D G 
Sbjct: 297 NSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGP 356

Query: 390 YRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
           Y C   N L  D ++  +       +      +  PS
Sbjct: 357 YECGIQNELSVDHSDPVILNV----LYGPDDPTISPS 389

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  197 bits (503), Expect = 9e-54
 Identities = 62/322 (19%), Positives = 95/322 (29%), Gaps = 35/322 (10%)

Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-------------------FV 180
           +L ++        G  V +      + L   SW K E                       
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 181 EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN-LLGEDVAEGYLTVTG-APPIFIQRPVS 238
                 I+   SL + NI   D+G Y        L  + A G   V    P   I    S
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120

Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
                      TC  E        W+ +  SL     +   +    L L  V  +D   Y
Sbjct: 121 KPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179

Query: 299 NCVAQNSEGSAESVAMIRINGHRAP-RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
            C  QN   +  S + + +N    P    + P +    +G ++ + C     P  + SW 
Sbjct: 180 KCETQNPVSARRSDS-VILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWF 238

Query: 358 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
            +              T  L + NI   +SG Y C A N           T+T       
Sbjct: 239 VN--------GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV---YAE 287

Query: 418 APHTSREPSASKPSVADDTIHM 439
            P      + S P   +D + +
Sbjct: 288 PPKPFITSNNSNPVEDEDAVAL 309

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
            +  L I+ +   + G Y+C   N A      +  ++   
Sbjct: 602 HTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  300 bits (769), Expect = 2e-93
 Identities = 90/386 (23%), Positives = 159/386 (41%), Gaps = 22/386 (5%)

Query: 44  APPIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGF 99
           + P+F+Q P    +   S     +++C V+G+P P + W  +G  +D   D      DG 
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEI 158
           +L+ N  +  DAG Y C+A NS G+  S    ++          +    +    G  + +
Sbjct: 64  LLINNPNKTQDAGTYQCIATNSFGTIVSRE-AKLQFAYLENFKTRTRSTVSVRRGQGMVL 122

Query: 159 PCK-PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216
            C  P        +W  +E   + ++R      TG+L +  +   D G Y C  +N +  
Sbjct: 123 LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTN 182

Query: 217 D----------VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD 266
                      +    +     P I +Q P +     G+T ++ C   G+P+P + W   
Sbjct: 183 HKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 242

Query: 267 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLV 326
                +     ++ +G +L +   ++ DAG Y CVA+NS G   +   +    +  P  V
Sbjct: 243 DGKPIARKARRHKSNG-ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF--YAQPNWV 299

Query: 327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD 386
               D+      SV   CK +G P P   W K+    +     +I + G+L +  +   D
Sbjct: 300 QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-GTLNITIVNLSD 358

Query: 387 SGLYRCTASNLLGEDVAEGYLTVTGE 412
           +G+Y+C A N  G   +   L+V  E
Sbjct: 359 AGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  259 bits (664), Expect = 2e-78
 Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 17/326 (5%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTY-STGST 62
              + L+ +  + +  G Y C+A N  G +   +  +       F  R  ST     G  
Sbjct: 60  VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQG 119

Query: 63  SRITCLV-EGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
             + C            W  +       +     +  G  L +  V +SD G Y CV  N
Sbjct: 120 MVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG-NLYIAKVEKSDVGNYTCVVTN 178

Query: 121 SEGSAES--------VAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRIS 171
           +  + +         +    + G   P++ V+ P  + A  G++V++ C   G P+P I 
Sbjct: 179 TVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTIL 238

Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
           W + + + +  +  +    G L + N   +D+G Y C A N  G++VA+G LT   A P 
Sbjct: 239 WRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY-AQPN 297

Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
           ++Q       +   +    C   G P P   W  +G+ L + D +  E     L +  V 
Sbjct: 298 WVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG--TLNITIVN 355

Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRI 317
            SDAG+Y CVA+N  G   S A + +
Sbjct: 356 LSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  214 bits (546), Expect = 7e-62
 Identities = 68/306 (22%), Positives = 120/306 (39%), Gaps = 24/306 (7%)

Query: 138 APRLVVKPFDMRAPA---GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSL 193
            P  V +P  +  P       V++ C+  G P P I W  +  +     + +     GSL
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 194 RLYNIG-PQDSGLYRCTASNLLGEDVA-EGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
            + N    QD+G Y+C A+N  G  V+ E  L          +   + +   G    + C
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124

Query: 252 LV-EGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
                       W  +       +     +  G  L +  V +SD G Y CV  N+  + 
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG-NLYIAKVEKSDVGNYTCVVTNTVTNH 183

Query: 310 ES--------VAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 360
           +         +    + G   P++ V+ P  + A  G++V++ C   G P+P I W + +
Sbjct: 184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD 243

Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
            + +  +  +    G L + N   +D+G Y C A N  G++VA+G LT          P+
Sbjct: 244 GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------QPN 297

Query: 421 TSREPS 426
             +  +
Sbjct: 298 WVQIIN 303

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  152 bits (385), Expect = 3e-40
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 227 GAPPIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDG 282
           G+ P+F+Q P    +   S     +++C V+G+P P + W  +G  +D   D      DG
Sbjct: 3   GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVE 341
            +L+ N  +  DAG Y C+A NS G+  S    ++          +    +    G  + 
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSRE-AKLQFAYLENFKTRTRSTVSVRRGQGMV 121

Query: 342 IPCK-PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
           + C  P        +W  +E   + ++R      TG+L +  +   D G Y C  +N + 
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT 181

Query: 400 ED---VAEGYLTVTGENS-VEPAPHTSREPSASKPSVADDTIHM 439
                     L +  +    E  P    +   + P+    T+ +
Sbjct: 182 NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  134 bits (338), Expect = 5e-34
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 2/130 (1%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
            +S+  L I   Q+E  G Y CVA N  G       +T  A P ++Q       +   + 
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESV 313

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
              C   G P P   W  +G+ L + D +  E     L +  V  SDAG+Y CVA+N  G
Sbjct: 314 FWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG--TLNITIVNLSDAGMYQCVAENKHG 371

Query: 124 SAESVAMIRI 133
              S A + +
Sbjct: 372 VIFSSAELSV 381

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  293 bits (752), Expect = 6e-91
 Identities = 86/398 (21%), Positives = 142/398 (35%), Gaps = 32/398 (8%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLD-SDDHVTYEHD 97
           + V+  P+   +P    +   + + + C++EG+    + +W  DG S +  + +     D
Sbjct: 1   LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60

Query: 98  GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
              LV    + SD G Y C A+   G A S   I            K  +     G   +
Sbjct: 61  EGSLVFLRPQASDEGHYQCFAETPAGVASSRV-ISFRKTYLIASPAKTHEKTPIEGRPFQ 119

Query: 158 IPCK-PDGEPLPRISWSKDEAE-------FVEDRNHKIHRTGSLRLYNIGPQDS---GLY 206
           + C  P+  P P I+W K  +           DR       G+L    +  +D      Y
Sbjct: 120 LDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKY 179

Query: 207 RCTASNLLGED-VAEGYLTVTG---------APPIFIQRPVSTTYSTGSTSRITCLVEGH 256
            CTA N   ++ V      + G           P+            G  + I C+   +
Sbjct: 180 VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSN 239

Query: 257 PLPQMTWFHDGNSLDSDDHVTYEH----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
           P+    +F +G  ++ +            G  L+       D GVY C   N  G  +  
Sbjct: 240 PMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 299

Query: 313 AMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI 371
           + +++    AP+   KP   +    G  V IPCK  G P P + WS +       R   +
Sbjct: 300 S-LKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-ATV 357

Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
                L +  +   D G Y C A+N  G+   E  + V
Sbjct: 358 TD-SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  253 bits (648), Expect = 4e-76
 Identities = 78/342 (22%), Positives = 116/342 (33%), Gaps = 31/342 (9%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
           R+    LV    Q    G Y C A  PAG      +            +    T   G  
Sbjct: 58  RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRP 117

Query: 63  SRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV---------RESDAG 112
            ++ C++   +P P +TW    +  D +  VT          +G            SD  
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177

Query: 113 VYNCVAQNSEGSAESVAMI---------RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 163
            Y C A+N+    E V +                 P       DM A AG    I C   
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG 237

Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLLGEDV 218
             P+   ++ K+  +   +   +I R        L      P+D G+Y C   N +G+  
Sbjct: 238 SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297

Query: 219 AEGY-LTVTGAPPIFIQRPVSTTY-STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
                LTV  + P + Q+P        G    I C V G P P + W H+   L      
Sbjct: 298 KHSLKLTVV-SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT 356

Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
             +     LV+ GV+  D G Y C A N  G      ++++N
Sbjct: 357 VTDS---GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  210 bits (535), Expect = 3e-60
 Identities = 63/331 (19%), Positives = 105/331 (31%), Gaps = 32/331 (9%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRT--GS 192
            + P L  +P ++     +   + C  +G     + SW KD   +    ++   R   GS
Sbjct: 4   DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
           L        D G Y+C A    G   +               +    T   G   ++ C+
Sbjct: 64  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123

Query: 253 V-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV---------RESDAGVYNCVA 302
           +   +P P +TW    +  D +  VT          +G            SD   Y C A
Sbjct: 124 LPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTA 183

Query: 303 QNSEGSAESVAMI---------RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
           +N+    E V +                 P       DM A AG    I C     P+  
Sbjct: 184 KNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGY 243

Query: 354 ISWSKDEAEFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408
            ++ K+  +   +   +I R        L      P+D G+Y C   N +G+        
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL-K 302

Query: 409 VTGENSVEPAPHTSREPSASKPSVADDTIHM 439
           +T    V  AP   ++P           + +
Sbjct: 303 LT----VVSAPKYEQKPEKVIVVKQGQDVTI 329

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  292 bits (748), Expect = 1e-90
 Identities = 96/387 (24%), Positives = 143/387 (36%), Gaps = 28/387 (7%)

Query: 45  PPIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFV 100
            P+F ++P  T +  GS      +TC    +P     W  +G  L       Y    G +
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIP 159
           ++ N V+  DAG Y CVA N+ G+  S     +          +  D ++   G  V   
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSRE-ASLRFGFLQEFSAEERDPVKITEGWGVMFT 122

Query: 160 CK-PDGEPLPRISWSKDEAEFV---EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
           C  P   P     W  +E       + R      TG+L +      D G Y C A++ + 
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182

Query: 216 EDVAEGYLTVTG-----------APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 264
                 +   +            AP I  + P  T   TG    + C   G+P+PQ+ W 
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242

Query: 265 HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
               S  S     +     +L +  V   D G Y C A+N +G       I I  H  P 
Sbjct: 243 KLDGSQTS----KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII--HAQPD 296

Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 384
            +    D  A  GS +   C   G+P P + W +D          ++   G LR   +  
Sbjct: 297 WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG-GELRFSKLVL 355

Query: 385 QDSGLYRCTASNLLGEDVAEGYLTVTG 411
           +DSG+Y+C A N  G   A   LTV  
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  248 bits (635), Expect = 2e-74
 Identities = 73/327 (22%), Positives = 120/327 (36%), Gaps = 21/327 (6%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRG-DLHVTVNAPPIFIQRPVSTTY-STGSTS 63
           +   ++ + V+ +  G Y CVA N  G     +  +       F          + G   
Sbjct: 60  AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119

Query: 64  RITCLV-EGHPLPQMTWFHDG--NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
             TC     +P     W  +   N + +D           L +     SD G Y+C A +
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS 179

Query: 121 SEGSAE----------SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI 170
                           S+A      +        P D  A  G  V + C   G P+P+I
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239

Query: 171 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
            W K +       +  +     L + N+  +D G Y C A N+ G D  +G + +  A P
Sbjct: 240 KWRKLDGS---QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH-AQP 295

Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 290
            ++     T    GS  R +C+  G P P + W  DG  L S + +        L  + +
Sbjct: 296 DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG--ELRFSKL 353

Query: 291 RESDAGVYNCVAQNSEGSAESVAMIRI 317
              D+G+Y CVA+N  G+  + A + +
Sbjct: 354 VLEDSGMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  149 bits (377), Expect = 4e-39
 Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 15/225 (6%)

Query: 229 PPIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFV 284
            P+F ++P  T +  GS      +TC    +P     W  +G  L       Y    G +
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIP 343
           ++ N V+  DAG Y CVA N+ G+  S     +          +  D ++   G  V   
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSRE-ASLRFGFLQEFSAEERDPVKITEGWGVMFT 122

Query: 344 CK-PDGEPLPRISWSKDEAEFV---EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
           C  P   P     W  +E       + R      TG+L +      D G Y C A++ + 
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182

Query: 400 ED-----VAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHM 439
                       L++  E++ + AP    +  A   ++    + +
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTL 227

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  134 bits (339), Expect = 4e-34
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 2/130 (1%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
             S   L I  V  E  G Y C A N  G       + ++A P ++     T    GS  
Sbjct: 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDL 312

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
           R +C+  G P P + W  DG  L S + +        L  + +   D+G+Y CVA+N  G
Sbjct: 313 RWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG--ELRFSKLVLEDSGMYQCVAENKHG 370

Query: 124 SAESVAMIRI 133
           +  + A + +
Sbjct: 371 TVYASAELTV 380

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  302 bits (775), Expect = 5e-90
 Identities = 93/479 (19%), Positives = 158/479 (32%), Gaps = 73/479 (15%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST- 59
           ++ ++  + L I GV R   G Y+C A +     +    V V+  P         +    
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342

Query: 60  --GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
             G   RI     G+P P++ W+ +G  L+S+  +   H   VL +  V E D G Y  +
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH---VLTIMEVSERDTGNYTVI 399

Query: 118 AQNSEGSAESVAMIRINGHRAPRLVVKPFD---MRAPAGSSVEIPCKPDGEPLPR-ISWS 173
             N     +   ++ +  +  P++  K           G++  + C     P P  I W 
Sbjct: 400 LTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 459

Query: 174 KDEAEFVEDRNHKIHRTGS------------------------------------LRLYN 197
               E   +   +     +                                      L  
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVI 519

Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
                S LY+C A N +G         VT  P I +Q  +  T     +  + C  +   
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTE--QESVSLWCTADRST 577

Query: 258 LPQMTWFHDGNSLDSDDHVTY----------------------EHDGFVLVLNGVRESDA 295
              +TW+  G                                  +D  ++ L      D 
Sbjct: 578 FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQ 637

Query: 296 GVYNCVAQNSEGSAESVAM--IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
           G Y C+AQ+ +       +  + +    AP +     +     G S+E+ C   G P P+
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ 697

Query: 354 ISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
           I W KD    VED    +     +L +  +  +D GLY C A ++LG    E +  + G
Sbjct: 698 IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  277 bits (710), Expect = 5e-81
 Identities = 83/486 (17%), Positives = 148/486 (30%), Gaps = 68/486 (13%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP-----IFIQRPVST 55
             D      L I  V     G Y C            ++V     P           V  
Sbjct: 79  CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYI 138

Query: 56  TYSTGSTSRITCLVEGHPLPQM--TWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
           T +   T  I CL     L       + +   +   + ++++       +     S AG+
Sbjct: 139 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK-GFTIPSYMISYAGM 197

Query: 114 YNCVAQNSEGSAESVAMIRIN-GHRAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLPRIS 171
             C A+ ++ S +S+  I +  G+R   +V+ P   +    G  + + C    E    I 
Sbjct: 198 VFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGID 257

Query: 172 WSKDEAEFVEDRNHKIHR-------------TGSLRLYNIGPQDSGLYRCTASNLLGEDV 218
           ++ +           ++R               +L +  +   D GLY C AS+ L    
Sbjct: 258 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 317

Query: 219 AEGYLTVTGAPPIFIQRPVSTTYST--GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
              ++ V   P +     + +      G   RI     G+P P++ W+ +G  L+S+  +
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI 377

Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD---MR 333
              H   VL +  V E D G Y  +  N     +   ++ +  +  P++  K        
Sbjct: 378 KAGH---VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434

Query: 334 APAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRNHKIHRTGS---------------- 376
              G++  + C     P P  I W     E   +   +     +                
Sbjct: 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494

Query: 377 --------------------LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
                                 L       S LY+C A N +G         VT    + 
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT 554

Query: 417 PAPHTS 422
             P   
Sbjct: 555 LQPDMQ 560

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  270 bits (692), Expect = 2e-78
 Identities = 84/501 (16%), Positives = 154/501 (30%), Gaps = 87/501 (17%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA----PPIFIQRPVSTTYSTGS 61
           S     I      + G   C A      Y+  +++ V        + +        S G 
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 240

Query: 62  TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD------------GFVLVLNGVRES 109
              + C         + +  +  S           D               L ++GV  S
Sbjct: 241 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300

Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLP 168
           D G+Y C A +   + ++   +R++              + A  G  V IP K  G P P
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360

Query: 169 RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT-G 227
            I W K+      + NH I     L +  +  +D+G Y    +N + ++     +++   
Sbjct: 361 EIKWYKNGIPL--ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418

Query: 228 APPIFIQRPVST---TYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDH-------- 275
            PP   ++ + +   +Y  G+T  +TC V   P P  + W+       +++         
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478

Query: 276 ---------------------------VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
                                      +    +  V  L     + + +Y C A N  G 
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538

Query: 309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
            E V    +   R P + ++P DM+     SV + C  D      ++W K   + +    
Sbjct: 539 GERVISFHV--TRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595

Query: 369 HKI-----------------------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405
            ++                       +    + L N   QD G Y C A +   +     
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655

Query: 406 YLTVTGENSVEPAPHTSREPS 426
              +T       AP  +    
Sbjct: 656 VRQLTVL--ERVAPTITGNLE 674

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  268 bits (686), Expect = 1e-77
 Identities = 70/439 (15%), Positives = 133/439 (30%), Gaps = 35/439 (7%)

Query: 19  HGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT 78
               + CV    A V    + +     P    +    T    +T +ITC   G       
Sbjct: 8   AVALWLCVETRAASVGLPSVSLD---LPRLSIQKDILTIKANTTLQITC--RGQRDLDWL 62

Query: 79  WFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           W ++ +  +    VT   DG     L +  V  +D G Y C  + ++ ++     ++   
Sbjct: 63  WPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR 122

Query: 136 H---RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHRT 190
                +         +      +V IPC      L     +   ++    +         
Sbjct: 123 SPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK 182

Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT---GAPPIFIQRPVSTTYSTGSTS 247
               + +     +G+  C A        +  Y+ V        + +        S G   
Sbjct: 183 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 242

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD------------GFVLVLNGVRESDA 295
            + C         + +  +  S           D               L ++GV  SD 
Sbjct: 243 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302

Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRI 354
           G+Y C A +   + ++   +R++              + A  G  V IP K  G P P I
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEI 362

Query: 355 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
            W K+      + NH I     L +  +  +D+G Y    +N + ++     +++     
Sbjct: 363 KWYKNGIPL--ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV---- 416

Query: 415 VEPAPHTSREPSASKPSVA 433
           V   P    +   S     
Sbjct: 417 VYVPPQIGEKSLISPVDSY 435

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  213 bits (544), Expect = 2e-58
 Identities = 56/359 (15%), Positives = 120/359 (33%), Gaps = 37/359 (10%)

Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
               ++ CV   +         +       PRL ++   +   A ++++I C+  G+   
Sbjct: 7   LAVALWLCVETRAASVGLPSVSL-----DLPRLSIQKDILTIKANTTLQITCR--GQRDL 59

Query: 169 RISWSKDEAEFVEDRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 224
              W  +++   +         G    +L +  +   D+G Y+C         V   Y+ 
Sbjct: 60  DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119

Query: 225 VTGAPPI----FIQRPVSTTYSTGSTSRITCLVEGHPLPQM--TWFHDGNSLDSDDHVTY 278
              +P I         V  T +   T  I CL     L       + +   +   + +++
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179

Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN-GHRAPRLVVKPF-DMRAPA 336
           +       +     S AG+  C A+ ++ S +S+  I +  G+R   +V+ P   +    
Sbjct: 180 DSKK-GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSV 238

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-------------TGSLRLYNIG 383
           G  + + C    E    I ++ +           ++R               +L +  + 
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298

Query: 384 PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVK 442
             D GLY C AS+ L       ++ V      +P         +   +   + + +  K
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFVAFGSGMESLVEATVGERVRIPAK 353

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  186 bits (472), Expect = 4e-49
 Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 26/254 (10%)

Query: 3   DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
           + ++ T   +          Y C A N  G     +   V   P    +P     +   +
Sbjct: 508 EGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQP-DMQPTEQES 566

Query: 63  SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY----------------------EHDGFV 100
             + C  +      +TW+  G                                  +D  +
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAM--IRINGHRAPRLVVKPFDMRAPAGSSVEI 158
           + L      D G Y C+AQ+ +       +  + +    AP +     +     G S+E+
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEV 686

Query: 159 PCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGED 217
            C   G P P+I W KD    VED    +     +L +  +  +D GLY C A ++LG  
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 746

Query: 218 VAEGYLTVTGAPPI 231
             E +  + GA   
Sbjct: 747 KVEAFFIIEGAQEK 760

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  146 bits (369), Expect = 3e-36
 Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 14/234 (5%)

Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
                L+ C  +      +    L      P    +    T    +T +ITC   G    
Sbjct: 6   LLAVALWLCVETRAASVGLPSVSLD----LPRLSIQKDILTIKANTTLQITC--RGQRDL 59

Query: 260 QMTWFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
              W ++ +  +    VT   DG     L +  V  +D G Y C  + ++ ++     ++
Sbjct: 60  DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119

Query: 317 INGH---RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKI 371
                   +         +      +V IPC      L     +   ++    +      
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179

Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREP 425
                  + +     +G+  C A        +  Y+ V     +     +    
Sbjct: 180 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHG 233

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 46.3 bits (109), Expect = 4e-05
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
            +  L I  V++E  G Y+C A +  G  + +    +          
Sbjct: 718 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 764

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  290 bits (743), Expect = 2e-89
 Identities = 85/397 (21%), Positives = 139/397 (35%), Gaps = 29/397 (7%)

Query: 38  LHVTVNAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTY 94
           +   +  PP   ++              I C  +G+P P   W  +    +   D  V+ 
Sbjct: 9   IQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSM 68

Query: 95  EHDG----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MR 149
                         G  E   G Y C A+N  G+A S   IR+   ++P    +  D + 
Sbjct: 69  RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR-IRLQVSKSPLWPKENLDPVV 127

Query: 150 APAGSSVEIPCK-PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDS-GLY 206
              G+ + + C  P G P P I W     E   +D+       G L   N+  QD    Y
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDY 187

Query: 207 RCTASNLLGEDV---AEGYLTVTGA------PPIFIQ---RPVSTTYSTGSTSRITCLVE 254
            C A       +       L V          P F+       S     G    + C+  
Sbjct: 188 SCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS 247

Query: 255 GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
           G P P + W+  G  L   D   +E+    L +  V E D+G Y C+A N  GS      
Sbjct: 248 GVPTPDIAWYKKGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306

Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
           +R+    AP  + +P ++    G    + C+ +G P P + W  +         +     
Sbjct: 307 VRV--KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV 364

Query: 375 --GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
              ++   +       +Y+C  SN  G  +A  +++V
Sbjct: 365 AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  249 bits (638), Expect = 1e-74
 Identities = 73/326 (22%), Positives = 119/326 (36%), Gaps = 19/326 (5%)

Query: 9   ELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTY-STGSTSRIT 66
           +    G   E+ G Y C A N  G      + + V+  P++ +  +       G+   + 
Sbjct: 78  DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137

Query: 67  CLV-EGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDA-GVYNCVAQNSEG 123
           C    G P P + W          D  V+  H+G  L  + V   D    Y+C A+    
Sbjct: 138 CNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG-DLYFSNVMLQDMQTDYSCNARFHFT 196

Query: 124 SAES--------VAMIRINGHRAPRLVV---KPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
                       V   R    R P  +             G  + + C   G P P I+W
Sbjct: 197 HTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAW 256

Query: 173 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
            K   +   D+    +   +LR+ N+  +DSG Y C ASN +G       + V  A P +
Sbjct: 257 YKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK-AAPYW 315

Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVR 291
           +  P +   + G   R+ C   G+P P + W  +G  L  +  +   E  G  ++    +
Sbjct: 316 LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQ 375

Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRI 317
            S   VY C   N  G   + A + +
Sbjct: 376 ISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  134 bits (338), Expect = 7e-34
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 1/131 (0%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
              +  L I+ V  E  G Y C+A N  G  R  + V V A P ++  P +   + G   
Sbjct: 271 ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDG 330

Query: 64  RITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
           R+ C   G+P P + W  +G  L  +  +   E  G  ++    + S   VY C   N  
Sbjct: 331 RLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEH 390

Query: 123 GSAESVAMIRI 133
           G   + A + +
Sbjct: 391 GYLLANAFVSV 401

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  276 bits (707), Expect = 4e-84
 Identities = 56/412 (13%), Positives = 120/412 (29%), Gaps = 28/412 (6%)

Query: 12  ISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG 71
            +         Y  V+ +P  +      +   +    +    +      ++  +  LV+ 
Sbjct: 19  NNDSSVGKSSSYPMVSESPEDL---GCALRPQSSG-TVYEAAAVEVDVSASITLQVLVDA 74

Query: 72  HPLPQMTWFHDGNSLDSDDHVTYEHDGF-VLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
                  W    +SL+   H   ++ G   +V+  + E+ AG Y    Q+   +   +  
Sbjct: 75  PGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFT 134

Query: 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIH 188
           + I         ++    R    +   + C  +  P P + W     + E  ++ +  + 
Sbjct: 135 VSI--RNTLLYTLRRPYFRK-MENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVV 191

Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
           +     L+ +   D    RC A N LG +    +                     G    
Sbjct: 192 KKEEKVLHELFGTD---IRCCARNELGRECTRLFTID--LNQTPQTTLPQLFLKVGEPLW 246

Query: 249 ITCL-VEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNG------VRESDAGVYN 299
           I C  V  +    +TW  +  +L+  ++  ++       ++         V  +D G Y 
Sbjct: 247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306

Query: 300 CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
           C +      +   A++ I             D             +    P  R +W+  
Sbjct: 307 CSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS 363

Query: 360 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
              F       +    S+  +       G Y   A N   +      L +  
Sbjct: 364 RKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  229 bits (584), Expect = 8e-67
 Identities = 45/336 (13%), Positives = 94/336 (27%), Gaps = 30/336 (8%)

Query: 3   DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
             R    +VI  +     G Y     + A  Y     V++    ++  R           
Sbjct: 98  QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD 157

Query: 63  SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG---VRESDAGVYNCVAQ 119
           + + C+ E  P P + W    +  +S      + +   +V      + E       C A+
Sbjct: 158 A-LVCISESVPEPIVEWVLCDSQGESC-----KEESPAVVKKEEKVLHELFGTDIRCCAR 211

Query: 120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAE 178
           N  G   +                    +    G  + I CK         ++W  +   
Sbjct: 212 NELGRECTRLFTI---DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA 268

Query: 179 FVEDRNHKI---------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
             E    ++          R     + ++   D+G Y C++S    +      +T+    
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIVEKG 325

Query: 230 PI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
            I                   +   + +P  + TW     S   +       +G+ +   
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--DNGYSISKF 383

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
              +   G Y   A+N +     +  + I      +
Sbjct: 384 CNHKHQPGEYIFHAENDDAQFTKMFTLNIRS--GTK 417

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  216 bits (550), Expect = 4e-62
 Identities = 42/354 (11%), Positives = 98/354 (27%), Gaps = 39/354 (11%)

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 163
           N      +  Y  V+++ E          +    +   V +   +     +S+ +    D
Sbjct: 20  NDSSVGKSSSYPMVSESPEDLG-----CALRPQ-SSGTVYEAAAVEVDVSASITLQVLVD 73

Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHR--TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 221
                   W    +      +  +      S+ +  +    +G Y     +         
Sbjct: 74  APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133

Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD 281
            +++       ++RP        +   + C+ E  P P + W    +  +S      + +
Sbjct: 134 TVSIRNTLLYTLRRPYFRK--MENQDALVCISESVPEPIVEWVLCDSQGESC-----KEE 186

Query: 282 GFVLVLNG---VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
              +V      + E       C A+N  G   +                    +    G 
Sbjct: 187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFT---IDLNQTPQTTLPQLFLKVGE 243

Query: 339 SVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKI---------HRTGSLRLYNIGPQDSG 388
            + I CK         ++W  +     E    ++          R     + ++   D+G
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303

Query: 389 LYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVK 442
            Y C++S    +      +T+     VE     +   S        +    +V+
Sbjct: 304 YYTCSSSKHPSQSA---LVTI-----VEKGFINATNSSEDYEIDQYEEFCFSVR 349

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  158 bits (401), Expect = 4e-42
 Identities = 31/240 (12%), Positives = 60/240 (25%), Gaps = 14/240 (5%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
            ++  +  +     +    G    C A N  G     L                     G
Sbjct: 184 KEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT-PQTTLPQLFLKVG 242

Query: 61  STSRITCL-VEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNG------VRESDA 111
               I C  V  +    +TW  +  +L+  ++  ++       ++         V  +D 
Sbjct: 243 EPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302

Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
           G Y C +      +   A++ I             D             +    P  R +
Sbjct: 303 GYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359

Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
           W+     F       +    S+  +       G Y   A N   +      L +      
Sbjct: 360 WTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH 418

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 93.2 bits (231), Expect = 4e-20
 Identities = 15/151 (9%), Positives = 35/151 (23%), Gaps = 18/151 (11%)

Query: 290 VRESDAGVYNCVAQNSEGSAESVA---------------MIRINGHRAPRLVVKPFDMRA 334
               D  V  CV  N + +  SV                   +    +   V +   +  
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ-SSGTVYEAAAVEV 60

Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--TGSLRLYNIGPQDSGLYRC 392
              +S+ +    D        W    +      +  +      S+ +  +    +G Y  
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120

Query: 393 TASNLLGEDVAEGYLTVTGENSVEPAPHTSR 423
              +          +++             R
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFR 151

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 4/45 (8%), Positives = 11/45 (24%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ 50
           +   +      +   G Y   A N    +     + + +      
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHH 420

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  275 bits (705), Expect = 1e-82
 Identities = 71/455 (15%), Positives = 136/455 (29%), Gaps = 49/455 (10%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
              E +    +  + G+Y+C   +        ++V V  P        S      + + +
Sbjct: 78  KQNEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVDRSLYGKEDNDTLV 134

Query: 66  TCLVEGHPLPQMTW-FHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
            C +    +   +     G  L  D     +    +++ +  R       +C       S
Sbjct: 135 RCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194

Query: 125 AESVAMI---RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFV 180
             S   I   R      P + V         G    + C           +W ++ ++  
Sbjct: 195 VLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTK 254

Query: 181 EDRNHKI--------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
               +           R  +L + +    DSG++ C A+N  G       L V     I 
Sbjct: 255 LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFIN 314

Query: 233 IQRPVSTTYST--GSTSRITCLVEGHPLPQM-TWFHDGNSLDSDDHVTYEHDG------- 282
           I   ++TT     G    +    E  P P+   W +   +         + +        
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 342
             L L  ++ ++ G Y  +  NS+ +A     + +N         KP  +      +  +
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN--------TKPEILTYDRLVNGML 426

Query: 343 PCKPDGEPLPRISWSK-------DEAEFVEDRNHKIHRTG--------SLRLYNIGPQDS 387
            C   G P P I W           A  +      ++ +G           + +   + +
Sbjct: 427 QCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHN 486

Query: 388 GLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS 422
           G   C A N +G+  A       G N  +  PH  
Sbjct: 487 GTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHHH 521

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  250 bits (640), Expect = 2e-73
 Identities = 57/423 (13%), Positives = 118/423 (27%), Gaps = 49/423 (11%)

Query: 18  EHGGRYSCV----AGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 73
                + CV         G  +  +     +PP             G   R+ C   G  
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64

Query: 74  LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
                W  +     +++           +      ++ G Y C  ++   ++     I +
Sbjct: 65  ----KWTFEILDETNENKQN------EWITEKAEATNTGKYTCTNKHGLSNS-----IYV 109

Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTGS 192
                 +L +    +     +   + C      +   S    + + + +D          
Sbjct: 110 FVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG 169

Query: 193 LRLYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVT-----GAPPIFIQRPVSTTYSTGST 246
           + + ++          C+     G+ V      +       A P+      S     G  
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQ-EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEE 228

Query: 247 SRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGF-------VLVLNGVRESDAGVY 298
             +TC ++        TW  + +     +     H G         L ++  R +D+GV+
Sbjct: 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF 288

Query: 299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSSVEIPCKPDGEPLPR-I 354
            C A N+ GSA     + +       + + P     +    G +V++  + +  P P   
Sbjct: 289 MCYANNTFGSANVTTTLEV--VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ 346

Query: 355 SWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
            W      F +             I     L L  +   + G Y    SN          
Sbjct: 347 QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN 406

Query: 407 LTV 409
           + V
Sbjct: 407 VYV 409

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  190 bits (483), Expect = 4e-52
 Identities = 46/320 (14%), Positives = 95/320 (29%), Gaps = 32/320 (10%)

Query: 107 RESDAGVYNCV----AQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
               A  + CV     +   GS++    +       P +     D+    G  + + C  
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQ--PSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD 60

Query: 163 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 222
            G     + W+ +  +   +     ++            ++G Y CT  + L   +   Y
Sbjct: 61  PGF----VKWTFEILDETNE-----NKQNEWITEKAEATNTGKYTCTNKHGLSNSI---Y 108

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW-FHDGNSLDSDDHVTYEHD 281
           + V     +F+    S      + + + C +    +   +     G  L  D     +  
Sbjct: 109 VFVRDPAKLFLV-DRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPK 167

Query: 282 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI---RINGHRAPRLVVKPFDMRAPAGS 338
             +++ +  R       +C       S  S   I   R      P + V         G 
Sbjct: 168 AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGE 227

Query: 339 SVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKI--------HRTGSLRLYNIGPQDSGL 389
              + C           +W ++ ++      +           R  +L + +    DSG+
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV 287

Query: 390 YRCTASNLLGEDVAEGYLTV 409
           + C A+N  G       L V
Sbjct: 288 FMCYANNTFGSANVTTTLEV 307

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  124 bits (312), Expect = 7e-30
 Identities = 23/234 (9%), Positives = 60/234 (25%), Gaps = 23/234 (9%)

Query: 199 GPQDSGLYRCT----ASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
           G + +  + C          G            +PP             G   R+ C   
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEP-SPPSIHPGKSDLIVRVGDEIRLLCTDP 61

Query: 255 GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
           G       W  +     +++           +      ++ G Y C  ++   ++     
Sbjct: 62  GFV----KWTFEILDETNENKQN------EWITEKAEATNTGKYTCTNKHGLSNS----- 106

Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHR 373
           I +      +L +    +     +   + C      +   S    + + + +D       
Sbjct: 107 IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDP 166

Query: 374 TGSLRLYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
              + + ++          C+     G+ V      +    + +  P  S   +
Sbjct: 167 KAGIMIKSVKRAYHRLCLHCSVDQ-EGKSVLSEKFILKVRPAFKAVPVVSVSKA 219

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  110 bits (277), Expect = 2e-25
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 22/155 (14%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
           R  +EL ++ ++   GG Y+ +  N         +V VN  P  +      TY       
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEIL------TYDRLVNGM 425

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--------------VLVLNGVRESD 110
           + C+  G P P + W+    +           D                   ++      
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKH 485

Query: 111 AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 145
            G   C A N  G   +       G+   +  + P
Sbjct: 486 NGTVECKAYNDVGKTSAYFNFAFKGN--NKEQIHP 518

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 8/52 (15%), Positives = 12/52 (23%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
               +   +  I     +H G   C A N  G      +            P
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  275 bits (704), Expect = 2e-82
 Identities = 70/449 (15%), Positives = 130/449 (28%), Gaps = 46/449 (10%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
               R    +VI  +     G Y     + A  Y     V++    ++  R         
Sbjct: 96  DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMEN 155

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
             + + C+ E  P P + W    +  +S                 + E       C A+N
Sbjct: 156 QDA-LVCISESVPEPIVEWVLCDSQGESCKE--ESPAVVKKEEKVLHELFGTDIRCCARN 212

Query: 121 SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEF 179
             G   +  +  I+ ++ P+  +    ++   G  + I CK         ++W  +    
Sbjct: 213 ELGRECT-RLFTIDLNQTPQTTLPQLFLK--VGEPLWIRCKAVHVNHGFGLTWELENKAL 269

Query: 180 VEDR---------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
            E           N  + R     + ++   D+G Y C++S    +      +T+     
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIVEKGF 326

Query: 231 I-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 289
           I                   +   + +P  + TW     S   +       +G+ +    
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--DNGYSISKFC 384

Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE 349
             +   G Y   A+N +     +  + I   R P+++ +         S+ +  C  DG 
Sbjct: 385 NHKHQPGEYIFHAENDDAQFTKMFTLNIR--RKPQVLAE--------ASASQASCFSDGY 434

Query: 350 PLPRISWSK--------------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
           PLP  +W K                     +R        S  L         L +C A 
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494

Query: 396 NLLGEDVAEGYLTVTGENSVEPAPHTSRE 424
           N LG       L   G         T   
Sbjct: 495 NSLGTSCETILLNSPGPFPFIQDGGTKHH 523

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  274 bits (702), Expect = 3e-82
 Identities = 54/412 (13%), Positives = 116/412 (28%), Gaps = 24/412 (5%)

Query: 8   TELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
                +         Y  V+ +P  +      +   +    +    +      ++  +  
Sbjct: 15  INHKNNDSSVGKSSSYPMVSESPEDL---GCALRPQSSGT-VYEAAAVEVDVSASITLQV 70

Query: 68  LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-VLVLNGVRESDAGVYNCVAQNSEGSAE 126
           LV+        W    +SL+   H   ++ G   +V+  + E+ AG Y    Q+   +  
Sbjct: 71  LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130

Query: 127 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 186
            +  + I         ++    R    +   + C  +  P P + W   +++  E    +
Sbjct: 131 ILFTVSI--RNTLLYTLRRPYFRK-MENQDALVCISESVPEPIVEWVLCDSQ-GESCKEE 186

Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGST 246
                      +        RC A N LG +    +       P      +      G  
Sbjct: 187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLK--VGEP 244

Query: 247 SRITCLV-EGHPLPQMTWFHDGNSLDSDDHVT--------YEHDGFVLVLNGVRESDAGV 297
             I C     +    +TW  +  +L+  ++                   ++ V  +D G 
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY 304

Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
           Y C +      +   A++ I             D             +    P  R +W+
Sbjct: 305 YTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT 361

Query: 358 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
                F  ++   +    S+  +       G Y   A N   +      L +
Sbjct: 362 FSRKSFPCEQKG-LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  147 bits (373), Expect = 1e-37
 Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 20/242 (8%)

Query: 197 NIGPQDSGLYRCTASNLLGEDV----AEGYLTVTGAP-----------PIFIQRPVSTTY 241
             G QD  + +C   N    D     +  Y  V+ +P              +    +   
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-VLVLNGVRESDAGVYNC 300
              ++  +  LV+        W    +SL+   H   ++ G   +V+  + E+ AG Y  
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120

Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 360
             Q+   +   +  + I         ++    R    +   + C  +  P P + W   +
Sbjct: 121 FIQSEATNYTILFTVSI--RNTLLYTLRRPYFRK-MENQDALVCISESVPEPIVEWVLCD 177

Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
           ++  E    +           +        RC A N LG +    +     +      P 
Sbjct: 178 SQ-GESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ 236

Query: 421 TS 422
             
Sbjct: 237 LF 238

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  264 bits (677), Expect = 1e-81
 Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 12/283 (4%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLR 194
            P   +KP  +    G S    C   G    +I+W+KD  E     N+K+     T +L 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP-VSTTYSTGSTSRITCLV 253
           +  +   D+G Y C ASN+ G+D     L V   PP FI++   S        +R  C +
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKI 123

Query: 254 EGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
            G P  ++ W+ D   +       +++     VL +  +   D+G Y C A N+ GSA S
Sbjct: 124 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 183

Query: 312 VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI 371
              +++     P    KP  +    G+ V + C+  G P  ++SW KD+ E    + +KI
Sbjct: 184 STSLKV--KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI 241

Query: 372 HRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
                  S+ + N+   D G Y+C ASN +G     G +T+  
Sbjct: 242 MSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  261 bits (668), Expect = 2e-80
 Identities = 77/284 (27%), Positives = 113/284 (39%), Gaps = 11/284 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVL 101
           APP F  +PVS   + G +    C V G    ++TW  D   +    +  +T   +   L
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 160
            +  V + DAG Y C A N  G     A + +     PR + K    R           C
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYEC 121

Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGED 217
           K  G P  ++ W KDE E  E    ++        L +YN+  +DSG Y C A N  G  
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181

Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
            +   L V   PP+F ++P       G+   + C ++G P  Q++W  D   L S     
Sbjct: 182 SSSTSLKVK-EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 240

Query: 278 YEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
              +     + +  V  +D G Y C A N  GS   V  I +  
Sbjct: 241 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  219 bits (559), Expect = 5e-65
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 8/228 (3%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP-VSTTYSTGSTSR 64
           ++  L +  V +   G+Y+C A N AG       + V  PP FI++   S        +R
Sbjct: 59  NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 118

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
             C + G P  ++ W+ D   +       +++     VL +  +   D+G Y C A N+ 
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           GSA S   +++     P    KP  +    G+ V + C+  G P  ++SW KD+ E    
Sbjct: 179 GSASSSTSLKV--KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG 236

Query: 183 RNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
           + +KI       S+ + N+   D G Y+C ASN +G     G +T+  
Sbjct: 237 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  262 bits (671), Expect = 2e-79
 Identities = 82/395 (20%), Positives = 136/395 (34%), Gaps = 40/395 (10%)

Query: 45  PPIFIQRPVST-TYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLV 102
            P+F++ P +   +S  + + I C   G+P+P++ W   DG ++     +        LV
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 103 LNGVRESD------AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
               R  D      A VY C+A+N  GS  S   + +    A              G+S 
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSA 121

Query: 157 EIPCKPD---GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GLYR 207
            I C       + +  +SW  DE E        D  + +  +G L +  +GP+D    Y+
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181

Query: 208 CTASNLLGEDV---AEGYLTV------TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
           C   + L  +    A     V      + AP                T  + C  +G P 
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPA 241

Query: 259 PQMTWFHDGNSLDSDDHVTYEH----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
           P   W+           V            L++      D+G Y CV  NS G      +
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301

Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
           + +         + P       G      C+  G P+  +SW KD  + +          
Sbjct: 302 LTV--TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHSE------ 352

Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             LR+ ++  +D G+Y+C   N      A   L +
Sbjct: 353 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  235 bits (600), Expect = 2e-69
 Identities = 72/341 (21%), Positives = 124/341 (36%), Gaps = 39/341 (11%)

Query: 6   SSTELVISGVQRE------HGGRYSCVAGNPAGVYR-GDLHVTVNAPPIFIQRPVSTTYS 58
           S  +LV    + E      H   Y+C+A N  G     D+HV       +          
Sbjct: 57  SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 116

Query: 59  TGSTSRITCLVEGH---PLPQMTWFHDGNSL-----DSDDHVTYEHDGFVLVLNGVRESD 110
            G+++ I CL+       +  ++W  D         + D        G  L +  V   D
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREVGPED 175

Query: 111 A-GVYNCVAQNSEGSAES--------VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
               Y C  ++               V    I+        +    +      ++ + C 
Sbjct: 176 GYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 235

Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNLLGE 216
             G P P   W K        +   ++      +G+L + +   +DSG Y C  +N +G 
Sbjct: 236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 295

Query: 217 DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
           +  E  LTVT AP      P + T   G  +  TC   G+P+  ++W  DG ++   +  
Sbjct: 296 ESVETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES- 353

Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
                  VL +  V++ D G+Y C  +N   SAE+ A +++
Sbjct: 354 -------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  193 bits (491), Expect = 2e-54
 Identities = 57/305 (18%), Positives = 101/305 (33%), Gaps = 32/305 (10%)

Query: 137 RAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIHRTGSL 193
           + P  + +P + +     +  EI CK  G P+P I W + +   V D     +I   G L
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 194 RLYNIGPQD------SGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTS 247
                  +D      + +Y C A N  G  ++            +           G+++
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121

Query: 248 RITCLVEGH---PLPQMTWFHDGNSL-----DSDDHVTYEHDGFVLVLNGVRESDA-GVY 298
            I CL+       +  ++W  D         + D        G  L +  V   D    Y
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREVGPEDGYKSY 180

Query: 299 NCVAQNSEGSAES--------VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP 350
            C  ++               V    I+        +    +      ++ + C   G P
Sbjct: 181 QCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP 240

Query: 351 LPRISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405
            P   W K        +   ++      +G+L + +   +DSG Y C  +N +G +  E 
Sbjct: 241 APSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 300

Query: 406 YLTVT 410
            LTVT
Sbjct: 301 VLTVT 305

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  136 bits (343), Expect = 1e-34
 Identities = 52/231 (22%), Positives = 85/231 (36%), Gaps = 21/231 (9%)

Query: 229 PPIFIQRPVST-TYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLV 286
            P+F++ P +   +S  + + I C   G+P+P++ W   DG ++     +        LV
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 287 LNGVRESD------AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
               R  D      A VY C+A+N  GS  S   + +    A              G+S 
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSA 121

Query: 341 EIPCKPD---GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GLYR 391
            I C       + +  +SW  DE E        D  + +  +G L +  +GP+D    Y+
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181

Query: 392 CTASNLLGEDV---AEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHM 439
           C   + L  +    A     V  E     AP T          +   TI +
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISL 232

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  131 bits (330), Expect = 5e-33
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
           ++ S  L+I     E  G+Y CV  N  G    +  +TV AP      P + T   G  +
Sbjct: 266 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 325

Query: 64  RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
             TC   G+P+  ++W  DG ++   +         VL +  V++ D G+Y C  +N   
Sbjct: 326 VFTCQYTGNPIKTVSWMKDGKAIGHSES--------VLRIESVKKEDKGMYQCFVRNDRE 377

Query: 124 SAESVAMIRI 133
           SAE+ A +++
Sbjct: 378 SAEASAELKL 387

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  248 bits (635), Expect = 2e-75
 Identities = 85/304 (27%), Positives = 119/304 (39%), Gaps = 21/304 (6%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
           T   PP FI+ P      +G  +   C   G P P++TW   G  ++S    T E D   
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 98  GFVLVLNGVR-ESDAGVYNCVAQNSEGSAES-----VAMIRINGHRAPRLVVKPFDMRAP 151
           G VL +  +R   D  VY CVAQNS G         V          P + + P      
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRC 208
              +  + C   G P P I+W KD        ++      R+G+L++ +    D G Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181

Query: 209 TASNLLGEDV---AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
            A+N  G      A  Y+ V    P F   P+S     G    ITC+  G P+P + W  
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ 241

Query: 266 DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 325
               L  +D +         VL      D+  Y CVA +S G  E+VA I +     P+ 
Sbjct: 242 GAEDLTPEDDMPVGR----NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS--LPKA 295

Query: 326 VVKP 329
             K 
Sbjct: 296 GTKH 299

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  245 bits (628), Expect = 2e-74
 Identities = 78/301 (25%), Positives = 117/301 (38%), Gaps = 18/301 (5%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----T 190
           G   PR + +P D    +G      C+  G+P PR++W+K   +    R   I       
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62

Query: 191 GSLRLYNIG-PQDSGLYRCTASNLLGEDVAEGYLTV------TGAPPIFIQRPVSTTYST 243
             LR+  +  P+D  +Y C A N +GE      LTV          P     P       
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
             T+ + C   G+P P++TWF D   +D  + +    +     L +    E+D G Y CV
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182

Query: 302 AQNSEGSAESV-AMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
           A NS G   S  A + +     APR  + P       G +V I C   G P+P + W + 
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242

Query: 360 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
             +   + +  +   G   L     +DS  Y C A + LG   A   +TV          
Sbjct: 243 AEDLTPEDDMPV---GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299

Query: 420 H 420
           H
Sbjct: 300 H 300

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  196 bits (500), Expect = 2e-56
 Identities = 61/246 (24%), Positives = 92/246 (37%), Gaps = 16/246 (6%)

Query: 3   DRRSSTELVISGVQR-EHGGRYSCVAGNPAGVYRGDLHVTV-------NAPPIFIQRPVS 54
           D  +   L I  ++       Y CVA N  G       +TV       +  P     P  
Sbjct: 58  DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117

Query: 55  TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAG 112
                  T+ + C   G+P P++TWF D   +D  + +    +     L +    E+D G
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177

Query: 113 VYNCVAQNSEGSAESV-AMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI 170
            Y CVA NS G   S  A + +     APR  + P       G +V I C   G P+P +
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV 237

Query: 171 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
            W +   +   + +  +   G   L     +DS  Y C A + LG   A   +TV    P
Sbjct: 238 KWMQGAEDLTPEDDMPV---GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS-LP 293

Query: 231 IFIQRP 236
               + 
Sbjct: 294 KAGTKH 299

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
            +D       V+     +    Y+CVA +  GV      +TV + P    + 
Sbjct: 248 PEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  242 bits (620), Expect = 2e-73
 Identities = 61/281 (21%), Positives = 104/281 (37%), Gaps = 8/281 (2%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VL 101
           A             S G +   TC   G P     +   G  + S   V  + +G    L
Sbjct: 3   ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
            +      DAG+Y C A +++G  +  A + +  ++               G   E+ C+
Sbjct: 63  TIYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121

Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRCTASNL-LGEDV 218
               P P +SW     E     +++       +L++ NI   D G+YRC       GE  
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 181

Query: 219 AEGYLTVTGAPPIFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
               + +   PP     Q+  + T   G     +C   G P P ++WF +G  ++ ++  
Sbjct: 182 FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241

Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
             +     L +  +  SD G Y C A N  G  E  A +++
Sbjct: 242 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  241 bits (616), Expect = 6e-73
 Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 9/280 (3%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
             ++ +    +    G S    C   GEP     ++    + +  +   + + G    L 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 195 LYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV 253
           +YN   +D+G+YRC A++  G+   A   L +      F +      +  G  + + C V
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEVVCRV 122

Query: 254 EGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
              P P ++W +    + +     +       L +  + +SD G+Y C  +         
Sbjct: 123 SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDF 182

Query: 313 AMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 370
             I +  +  P + +  K F+  A  G  +   C+  G P P ISW ++     E+  + 
Sbjct: 183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 242

Query: 371 I-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           +      L + NI   D G Y C A+N  GED  + +L V
Sbjct: 243 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  206 bits (526), Expect = 3e-60
 Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 6/234 (2%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
             + L I     E  G Y C A +  G      + + +     F +      +  G  + 
Sbjct: 58  VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAE 117

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEG 123
           + C V   P P ++W +    + +     +       L +  + +SD G+Y C  +    
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177

Query: 124 SAESVAMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
                  I +  +  P + +  K F+  A  G  +   C+  G P P ISW ++     E
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE 237

Query: 182 DRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
           +  + +      L + NI   D G Y C A+N  GED  + +L V         
Sbjct: 238 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF-VQHHHHH 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  161 bits (408), Expect = 3e-44
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VL 285
           A             S G +   TC   G P     +   G  + S   V  + +G    L
Sbjct: 3   ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
            +      DAG+Y C A +++G  +  A + +  ++               G   E+ C+
Sbjct: 63  TIYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121

Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRCTASNL-LGEDV 402
               P P +SW     E     +++       +L++ NI   D G+YRC       GE  
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 181

Query: 403 AEGYLTVTGENSVEPAPHTSREPS 426
               + +    +V PA    ++  
Sbjct: 182 FRDIIVIV---NVPPAISMPQKSF 202

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  239 bits (612), Expect = 3e-72
 Identities = 65/291 (22%), Positives = 111/291 (38%), Gaps = 17/291 (5%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDRNHKI------HR 189
           R  ++ + P       G S    C+  G+     ISW     E +     +I        
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
           + +L +YN    D+G+Y+C  +   G    A   + +     +F   P    +  G  + 
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAV 119

Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEG 307
           I C V     P + W H G  +     V +       L + G++++D G Y C  +    
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 308 SAESVAMIRINGHRAPRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKD-----E 360
              +   I++  +  P +  +    +  A  G SV + C  DG P P +SW+KD      
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239

Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
            E  ++++     +  L + N+   D   Y C A N  GE  A  +L V  
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  218 bits (556), Expect = 1e-64
 Identities = 61/287 (21%), Positives = 106/287 (36%), Gaps = 16/287 (5%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDSDDH----VTYEHDGF 99
                 P     S G +    C V G      ++WF  +G  L  +      V  + D  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
            L +      DAG+Y CV    +G+    A + +   +       P       G    I 
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121

Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           C       P I W     + +  ++ +        L++  I   D G YRC    L   +
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181

Query: 218 VAEGYLTVTG-APPIFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
           +    + V    PP     Q  V+ T + G +  + C  +G P P M+W  DG  +++++
Sbjct: 182 INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE 241

Query: 275 HVTYEH----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
               +H    D   L +  V ++D   Y C+A+N  G  ++   +++
Sbjct: 242 EDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  201 bits (513), Expect = 2e-58
 Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 9/236 (3%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGV-YRGDLHVTVNAPPIFIQRPVSTTYST 59
             +   S+ L I     +  G Y CV     G      ++V +    +F   P    +  
Sbjct: 55  VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE 114

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVA 118
           G  + I C V     P + W H G  +     V +       L + G++++D G Y C  
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG 174

Query: 119 QNSEGSAESVAMIRINGHRAPRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKD- 175
           +       +   I++  +  P +  +    +  A  G SV + C  DG P P +SW+KD 
Sbjct: 175 RILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG 234

Query: 176 ----EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
                 E  ++++     +  L + N+   D   Y C A N  GE  A  +L V  
Sbjct: 235 EPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  228 bits (582), Expect = 7e-68
 Identities = 57/315 (18%), Positives = 111/315 (35%), Gaps = 40/315 (12%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG 98
           +     P F++  +S   +      + C V        + W+ D   +  D+   ++   
Sbjct: 2   IDPFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60

Query: 99  FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 158
             L++    + DAG+Y  + ++  G  +S    ++       L+++     A + + ++I
Sbjct: 61  CTLLITEFSKKDAGIYEVILKDDRGKDKSRL--KLVDEAFKELMMEVCKKIALSATDLKI 118

Query: 159 PCKPDGEPL----------PRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGL 205
               +G  L           +++WS + +        K   TG    L++    P D G 
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178

Query: 206 YRCTASNLLGEDVAEGYLTVTG--------------------APPIFIQRPVSTTYSTGS 245
           Y     +          L+                          +    P   T   G 
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238

Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVA 302
              +TC V G P P+++W  +  +L SDDH   + +        +NGV  +D+G Y  V 
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 298

Query: 303 QNSEGSAESVAMIRI 317
           +N  GS  S   + +
Sbjct: 299 KNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  221 bits (564), Expect = 3e-65
 Identities = 59/311 (18%), Positives = 104/311 (33%), Gaps = 39/311 (12%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKI-HRTGSL 193
              P   V+          +V + CK    +    I W KDE E   D  H       +L
Sbjct: 5   FTGPH-FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 63

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV 253
            +     +D+G+Y     +  G+D +   L    A    +         + +  +I    
Sbjct: 64  LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALSATDLKIQSTA 122

Query: 254 EGHPL----------PQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCV 301
           EG  L           ++ W H+G+++   D V     G    L +N    +D G Y   
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 182

Query: 302 AQNSEGSAESVAMIRING-------------------HRAPRLVVKPFDMRAPAGSSVEI 342
             + +   +    +                       +RA  L   P  +    G ++ +
Sbjct: 183 LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL 242

Query: 343 PCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLL 398
            C   G+P P +SW K+E     D +  +     RT    +  +   DSG Y     N  
Sbjct: 243 TCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 302

Query: 399 GEDVAEGYLTV 409
           G + ++  ++V
Sbjct: 303 GSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  187 bits (476), Expect = 4e-53
 Identities = 45/255 (17%), Positives = 86/255 (33%), Gaps = 35/255 (13%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
               L+I+   ++  G Y  +  +  G  +  L +   A    +         + +  +I
Sbjct: 59  GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKI 118

Query: 66  TCLVEGHPL----------PQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGV 113
               EG  L           ++ W H+G+++   D V     G    L +N    +D G 
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178

Query: 114 YNCVAQNSEGSAESVAMIRING-------------------HRAPRLVVKPFDMRAPAGS 154
           Y     + +   +    +                       +RA  L   P  +    G 
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238

Query: 155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTA 210
           ++ + C   G+P P +SW K+E     D +  +     RT    +  +   DSG Y    
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 298

Query: 211 SNLLGEDVAEGYLTV 225
            N  G + ++  ++V
Sbjct: 299 KNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  151 bits (383), Expect = 1e-40
 Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 287
            P F++  +S   +      + C V        + W+ D   +  D+   ++     L++
Sbjct: 7   GPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI 65

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 347
               + DAG+Y  + ++  G  +S    ++       L+++     A + + ++I    +
Sbjct: 66  TEFSKKDAGIYEVILKDDRGKDKSRL--KLVDEAFKELMMEVCKKIALSATDLKIQSTAE 123

Query: 348 GEPL----------PRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTA 394
           G  L           +++WS + +        K   TG    L++    P D G Y    
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183

Query: 395 SNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVA 433
            +          L+    +         ++ + ++ + A
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA 222

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
             I+GV     G+Y  V  N  G    D  V+V  P
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  216 bits (550), Expect = 4e-63
 Identities = 67/319 (21%), Positives = 100/319 (31%), Gaps = 48/319 (15%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
                +   +   +G +VE+ C  P G P+    W KD    V      +     L++ N
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLN 67

Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTG--------------------APPIFIQ--- 234
              +DSG Y C                                         P + +   
Sbjct: 68  ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127

Query: 235 -RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGV 290
                      +T R  C   G+P P ++W  +G     +  +      H  + LV+  V
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187

Query: 291 RESDAGVYNCVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 347
             SD G Y CV +N  GS      + +   + HR       P +  A  GS VE  CK  
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247

Query: 348 GEPLPRISWSKDEAEF----------------VEDRNHKIHRTGSLRLYNIGPQDSGLYR 391
            +  P I W K                         N        L L+N+  +D+G Y 
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307

Query: 392 CTASNLLGEDVAEGYLTVT 410
           C A N +G      +L V 
Sbjct: 308 CLAGNSIGFSHHSAWLVVL 326

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  209 bits (534), Expect = 7e-61
 Identities = 67/321 (20%), Positives = 103/321 (32%), Gaps = 49/321 (15%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
            P     +     + +G    ++C    G P+    W  DG  L   + V        L 
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL--VGPQRLQ 64

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMI-------------------RINGHRAPRLV- 142
           +      D+G Y+C  + ++      ++                          AP    
Sbjct: 65  VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124

Query: 143 ---VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED----RNHKIHRTGSLRL 195
              +    +  PA ++V   C   G P P ISW K+  EF  +         H+  SL +
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM 184

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA----PPIFIQRPVSTTYSTGSTSRITC 251
            ++ P D G Y C   N  G       L V       P +    P + T   GS     C
Sbjct: 185 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC 244

Query: 252 LVEGHPLPQMTWFHDG---------------NSLDSDDHVTYEHDGFVLVLNGVRESDAG 296
            V     P + W                     L +    T + +  VL L+ V   DAG
Sbjct: 245 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAG 304

Query: 297 VYNCVAQNSEGSAESVAMIRI 317
            Y C+A NS G +   A + +
Sbjct: 305 EYTCLAGNSIGFSHHSAWLVV 325

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  184 bits (467), Expect = 8e-52
 Identities = 57/278 (20%), Positives = 84/278 (30%), Gaps = 47/278 (16%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYR---------------------GDLHVTV 42
                 L +     E  G YSC       V                        +     
Sbjct: 57  LVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVD 116

Query: 43  NAPPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYE 95
              P + +              +T R  C   G+P P ++W  +G     +  +      
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176

Query: 96  HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPA 152
           H  + LV+  V  SD G Y CV +N  GS      + +   + HR       P +  A  
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEF----------------VEDRNHKIHRTGSLRLY 196
           GS VE  CK   +  P I W K                         N        L L+
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
           N+  +D+G Y C A N +G      +L V  A    ++
Sbjct: 297 NVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  144 bits (365), Expect = 4e-38
 Identities = 43/218 (19%), Positives = 69/218 (31%), Gaps = 30/218 (13%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
            P     +     + +G    ++C    G P+    W  DG  L   + V        L 
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL--VGPQRLQ 64

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMI-------------------RINGHRAPRLV- 326
           +      D+G Y+C  + ++      ++                          AP    
Sbjct: 65  VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124

Query: 327 ---VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED----RNHKIHRTGSLRL 379
              +    +  PA ++V   C   G P P ISW K+  EF  +         H+  SL +
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM 184

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
            ++ P D G Y C   N  G       L V   +   P
Sbjct: 185 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP 222

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
                +   +   +G +VE+ C  P G P+    W KD    V      +     L++ N
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLN 67

Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVA 433
              +DSG Y C                    +S +              + A
Sbjct: 68  ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  204 bits (520), Expect = 2e-59
 Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 16/282 (5%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
           AP +     ++    G +V + C  +G     + W    + +            +L   N
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPES--PGSTLTTRN 57

Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-H 256
              +++G YRCT            +L V      +       T   G  + + CL+    
Sbjct: 58  ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117

Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM-- 314
               ++   +G        V +       ++   +  D+  Y C    +   + S  +  
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWL 177

Query: 315 -IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED------R 367
            +       P++ ++P  +    G + +I C      +      K     +E       +
Sbjct: 178 KVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQ 237

Query: 368 NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           ++   +  +L L  +  QD+G+Y C ASN +G   A     V
Sbjct: 238 DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  190 bits (483), Expect = 2e-54
 Identities = 51/297 (17%), Positives = 83/297 (27%), Gaps = 27/297 (9%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
            P+            G T  + C+  G       W    +   + D    E  G  L   
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGSV----EWDGPISPYWTLDP---ESPGSTLTTR 56

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PD 163
                + G Y C       +  +   + +    A    +   ++    G    +PC   D
Sbjct: 57  NATFKNTGTYRCTELEDPMAGSTTIHLYVKD-PAHSWNLLAQEVTVVEGQEAVLPCLITD 115

Query: 164 GEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEG 221
                 +S  ++     +    +         +      DS  Y C       E      
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175

Query: 222 YLTV---TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN-----SLDSD 273
           +L V      PP     P       G  ++I C      +        G+      L+SD
Sbjct: 176 WLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD 235

Query: 274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF 330
               Y      L LN V   DAG+Y+CVA N  G+  +    ++        V    
Sbjct: 236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV--------VESHH 284

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  184 bits (469), Expect = 2e-52
 Identities = 38/245 (15%), Positives = 78/245 (31%), Gaps = 11/245 (4%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP-IFIQRPVSTTYST 59
            D     + L       ++ G Y C            +H+ V  P   +       T   
Sbjct: 44  LDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVE 103

Query: 60  GSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
           G  + + CL+        ++   +G        V +       ++   +  D+  Y C  
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKT 163

Query: 119 QNSEGSAESVAM---IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
             +   + S  +   +       P++ ++P  +    G + +I C      +      K 
Sbjct: 164 MVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKR 223

Query: 176 EAEFVED------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
               +E       +++   +  +L L  +  QD+G+Y C ASN +G   A     V  + 
Sbjct: 224 GDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283

Query: 230 PIFIQ 234
                
Sbjct: 284 HHHHH 288

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
           AP +     ++    G +V + C  +G     + W    + +            +L   N
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPES--PGSTLTTRN 57

Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
              +++G YRCT            +L V  
Sbjct: 58  ATFKNTGTYRCTELEDPMAGSTTIHLYVKD 87

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  202 bits (513), Expect = 9e-57
 Identities = 68/424 (16%), Positives = 119/424 (28%), Gaps = 40/424 (9%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ-RPVSTTYSTGSTS 63
             +   V      +   +  C +  P G       +TV   P  ++  P+ +    G   
Sbjct: 45  PGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNL 104

Query: 64  RITCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
            + C VEG  P   +T         L  +  V    +     +   R+     ++C  + 
Sbjct: 105 TLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV-TTTVLVRRDHHGANFSCRTEL 163

Query: 121 SEGSAESVAMIRINGHRAPRLVVKPF-------DMRAPAGSSVEIPCKPDGE---PLPRI 170
                        +     +  V P               +   + C  DG       ++
Sbjct: 164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223

Query: 171 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT-GAP 229
             +  +        +      +    ++  +D G  R T + +LG    E   TVT  + 
Sbjct: 224 HLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 289
           P           S G+   + C  E HP  ++T                      L+L  
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGVPAQPLGP--------RAQLLLKA 333

Query: 290 VRESDAGVYNCVAQNSEGSAE--SVAMIRINGHRAPRLVVK--PFDMRAPAGSSVEIPCK 345
             E +   ++C A                +     PRL  +  P +   P  S     C+
Sbjct: 334 TPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ 393

Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405
             G PLP +   KD    +                 +     G Y C A +  GE   E 
Sbjct: 394 AWGNPLPELKCLKDGTFPLP----------IGESVTVTRDLEGTYLCRARSTQGEVTREV 443

Query: 406 YLTV 409
            + V
Sbjct: 444 TVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  154 bits (390), Expect = 2e-40
 Identities = 53/333 (15%), Positives = 98/333 (29%), Gaps = 40/333 (12%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP--------PIFIQRPV-ST 55
            +     +   +  HG  +SC           +L    +AP        P    + V   
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPR 198

Query: 56  TYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN-GVRESDA 111
                +   + C ++G       Q+        L+    VTY +D F    +  V   D 
Sbjct: 199 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDE 256

Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
           G          G+     +  +  +  P   V         G+ V + C  +  P  +++
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC--EAHPRAKVT 314

Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG----EDVAEGYLTVTG 227
            +   A+ +  R         L L      +   + C+A+  +            L V  
Sbjct: 315 LNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 367

Query: 228 APPIFI-QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
            P +     P + T+   S     C   G+PLP++    DG                   
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVT-------- 419

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
              V     G Y C A++++G       + +  
Sbjct: 420 ---VTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  146 bits (370), Expect = 7e-38
 Identities = 51/391 (13%), Positives = 104/391 (26%), Gaps = 34/391 (8%)

Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 111
           P       G +  +TC         +        L   + +         V       + 
Sbjct: 6   PSKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELL--LPGNNRKVYELSNVQED 60

Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSSVEIPCK-PDGEPLPR 169
               C +   +G + +   + +  +  P  V + P     P G ++ + C+   G P   
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 170 --ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
             +   + E E   +         +  +          + C     L     E +   + 
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178

Query: 228 A--------PPIFIQRPVSTTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLDSDDHV 276
                    P    Q          +   + C ++G       Q+        L+    V
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TV 236

Query: 277 TYEHDGFVLVLN-GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP 335
           TY +D F    +  V   D G          G+     +  +  +  P   V        
Sbjct: 237 TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS 296

Query: 336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
            G+ V + C  +  P  +++ +   A+ +  R         L L      +   + C+A+
Sbjct: 297 EGTEVTVKC--EAHPRAKVTLNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSAT 347

Query: 396 NLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
             +   +     T        P       P 
Sbjct: 348 LEVAGQLIHKNQTRELRVLYGPRLDERDCPG 378

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  129 bits (324), Expect = 7e-32
 Identities = 47/298 (15%), Positives = 90/298 (30%), Gaps = 22/298 (7%)

Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-Q 201
           V P  +  P G SV + C    +    +       E    +   +    + ++Y +   Q
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPMLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ 58

Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQ 260
           +     C ++   G+  A+ +LTV   P      P+ +    G    + C VEG  P   
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 261 MT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           +T         L  +  V    +     +   R+     ++C  +              +
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEV-TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177

Query: 319 GHRAPRLVVKP-------FDMRAPAGSSVEIPCKPDGE---PLPRISWSKDEAEFVEDRN 368
                +  V P               +   + C  DG       ++  +  +        
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237

Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
           +      +    ++  +D G  R T + +LG    E   TVT      PAP+      
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY--SFPAPNVILTKP 293

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  127 bits (320), Expect = 2e-31
 Identities = 42/228 (18%), Positives = 65/228 (28%), Gaps = 24/228 (10%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGS 61
           +D  S+   V    + E   R +C              VT+ + P           S G+
Sbjct: 240 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 299

Query: 62  TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
              + C  E HP  ++T                      L+L    E +   ++C A   
Sbjct: 300 EVTVKC--EAHPRAKVTLNGVPAQPLG--------PRAQLLLKATPEDNGRSFSCSATLE 349

Query: 122 EGSAE--SVAMIRINGHRAPRLVVK--PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177
                        +     PRL  +  P +   P  S     C+  G PLP +   KD  
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT 409

Query: 178 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
             +                 +     G Y C A +  GE   E  + V
Sbjct: 410 FPLP----------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 80.3 bits (197), Expect = 7e-16
 Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 13/210 (6%)

Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 295
           P       G +  +TC         +        L   + +         V       + 
Sbjct: 6   PSKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELL--LPGNNRKVYELSNVQED 60

Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSSVEIPCK-PDGEPLPR 353
               C +   +G + +   + +  +  P  V + P     P G ++ + C+   G P   
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 354 --ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
             +   + E E   +         +  +          + C     L     E +   + 
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178

Query: 412 --ENSVEPAPHTSREPSASKPSVADDTIHM 439
             +      P T  +  + +    D    +
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTV 208

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.8 bits (97), Expect = 8e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 15  VQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
           V R+  G Y C A +  G    ++ V V +P
Sbjct: 420 VTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  197 bits (501), Expect = 1e-56
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 39/306 (12%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLV 102
            P   +  V+       +    C     P  + +W  D  S +    +  E  G    + 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAM----------IRINGHRAPRLVVKPFDMRAPA 152
              +   D G+Y+C   +++G A S  +          +          V     +    
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121

Query: 153 GSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-----SLRLYNIGPQDSGLY 206
              V    +        ++++  +E E  E   +K+H         + +  +  +D G Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181

Query: 207 RCTASNLLGEDVAEGYLTVT------------------GAPPIFIQRPVSTTYSTGSTSR 248
                +    + +   L                        P F++  +S   +      
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVL 240

Query: 249 ITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
           + C V        + W+ D   +  D+   ++     L++    + DAG+Y  + ++  G
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 300

Query: 308 SAESVA 313
             +S  
Sbjct: 301 KDKSRL 306

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  190 bits (484), Expect = 2e-54
 Identities = 46/311 (14%), Positives = 95/311 (30%), Gaps = 38/311 (12%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
            P       ++      S+   C     P    SWSKD     +    ++   G    + 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 195 LYNIGPQDSGLYRCTASNLLG--------EDVAEGYLTVTG---APPIFIQRPVSTTYST 243
             ++G  D G+Y C  ++  G        E+  +  L ++     P + ++  ++     
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121

Query: 244 GSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLVLNGVRESDAGVY 298
               R     E      ++ +  +   +          D       + +  +++ D G Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181

Query: 299 NCVAQNSEGSAESVAMIRINGH----------------RAPRLVVKPFDMRAPAGSSVEI 342
               Q+ + +  S  ++  +                  +     V+          +V +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL 241

Query: 343 PCKPDGEPLP-RISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
            CK         I W KDE E   D  H       +L +     +D+G+Y     +  G+
Sbjct: 242 KCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 301

Query: 401 DVAEGYLTVTG 411
           D +   L    
Sbjct: 302 DKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  162 bits (410), Expect = 2e-44
 Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 35/257 (13%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGV------------YRGDLHVTVNAPPIFIQRPV 53
           + T++    +  +  G YSC   +  G+                L      P + ++  +
Sbjct: 56  NKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL 115

Query: 54  STTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLVLNGVRE 108
           +         R     E      ++ +  +   +          D       + +  +++
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 175

Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGH----------------RAPRLVVKPFDMRAPA 152
            D G Y    Q+ + +  S  ++  +                  +     V+        
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 235

Query: 153 GSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTA 210
             +V + CK         I W KDE E   D  H       +L +     +D+G+Y    
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 295

Query: 211 SNLLGEDVAEGYLTVTG 227
            +  G+D +   L    
Sbjct: 296 KDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  137 bits (346), Expect = 7e-36
 Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 19/221 (8%)

Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FV 284
           G  P   +  V+       +    C     P  + +W  D  S +    +  E  G    
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAM----------IRINGHRAPRLVVKPFDMRA 334
           +    +   D G+Y+C   +++G A S  +          +          V     +  
Sbjct: 60  MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119

Query: 335 PAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-----SLRLYNIGPQDSG 388
                V    +        ++++  +E E  E   +K+H         + +  +  +D G
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179

Query: 389 LYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASK 429
            Y     +    + +   L       ++      R+    K
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 220

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  103 bits (259), Expect = 2e-24
 Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 19/147 (12%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF------------- 48
           D      E+ +  +Q E  G Y+    +        + +  +                  
Sbjct: 160 DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 219

Query: 49  -----IQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLV 102
                    +S   +      + C V        + W+ D   +  D+   ++     L+
Sbjct: 220 KQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 279

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVA 129
           +    + DAG+Y  + ++  G  +S  
Sbjct: 280 ITEFSKKDAGIYEVILKDDRGKDKSRL 306

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 4/119 (3%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
            P       ++      S+   C     P    SWSKD     +    ++   G    + 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTI 437
             ++G  D G+Y C  ++  G   +        +  +  +          K  +A + +
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  195 bits (496), Expect = 3e-56
 Identities = 44/283 (15%), Positives = 92/283 (32%), Gaps = 18/283 (6%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
           P +     ++    G++V + C  +G     + W    +       +    +  L   N 
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP--HWTLYSDGSSSILSTNNA 58

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
             Q++G YRCT         A  +L V      +              + + CL+    L
Sbjct: 59  TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118

Query: 259 -PQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM-- 314
              ++     G  L    + ++        ++  +   +  Y C A        S+++  
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWH-GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRL 177

Query: 315 -IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIH 372
            ++      P L + P ++    G + +I C      +   +    +  +    +    H
Sbjct: 178 KVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH 237

Query: 373 RT-----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                   +L L  +  Q +G Y C ASN+ G+     +  V 
Sbjct: 238 NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  179 bits (455), Expect = 1e-50
 Identities = 47/287 (16%), Positives = 86/287 (29%), Gaps = 23/287 (8%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VL 101
           + P+            G+T  + C+  G     + W           H T   DG   +L
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEW-----DGPPSPHWTLYSDGSSSIL 53

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
             N     + G Y C          +   + +     P   V   ++         +PC 
Sbjct: 54  STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP-WNVLAQEVVVFEDQDALLPCL 112

Query: 162 -PDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
             D      +S  +     +    N+         ++      S  Y+C+A     + ++
Sbjct: 113 LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMS 172

Query: 220 EGY----LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDD 274
                    V   PP     P       G  ++I C      +   +   H+   L    
Sbjct: 173 ISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ 232

Query: 275 HVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
              + ++ +     L L+ V    AG Y+CVA N +G   +    R+
Sbjct: 233 QSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  168 bits (426), Expect = 9e-47
 Identities = 37/241 (15%), Positives = 77/241 (31%), Gaps = 14/241 (5%)

Query: 3   DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP-IFIQRPVSTTYSTGS 61
           D  SS  L  +    ++ G Y C            +H+ V  P   +             
Sbjct: 47  DGSSSI-LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQ 105

Query: 62  TSRITCLVEGHPL-PQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
            + + CL+    L   ++     G  L    + ++        ++  +   +  Y C A 
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH-GFTIHRAKFIQSQDYQCSAL 164

Query: 120 NSEGSAESVAM---IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKD 175
                  S+++   ++      P L + P ++    G + +I C      +   +    +
Sbjct: 165 MGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN 224

Query: 176 EAEFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
             +    +    H        +L L  +  Q +G Y C ASN+ G+     +  V  +  
Sbjct: 225 NTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284

Query: 231 I 231
            
Sbjct: 285 N 285

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  118 bits (296), Expect = 2e-29
 Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 15/204 (7%)

Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--V 284
           G+ P+            G+T  + C+  G     + W           H T   DG   +
Sbjct: 2   GSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEW-----DGPPSPHWTLYSDGSSSI 52

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
           L  N     + G Y C          +   + +     P   V   ++         +PC
Sbjct: 53  LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP-WNVLAQEVVVFEDQDALLPC 111

Query: 345 K-PDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
              D      +S  +     +    N+         ++      S  Y+C+A    G  V
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALM-GGRKV 170

Query: 403 AEGYLTVTGENSVEPAPHTSREPS 426
               + +  +  +   P  +  P+
Sbjct: 171 MSISIRLKVQKVIPGPPALTLVPA 194

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
           L +  V  +H G YSCVA N  G +   +   V          
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHH 289

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  183 bits (466), Expect = 2e-53
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 8/193 (4%)

Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEH 280
           +T   P F Q   S     GST+     + G P+P+++WF DG  + +       +++  
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSS 339
               L +  V ++++G Y+  A N  G A S A + +      P  V +   M    GS 
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 396
           V +  +  G P P + + +D AE     + +I + G   SL +    P+DSG Y   A+N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180

Query: 397 LLGEDVAEGYLTV 409
            +G   +   L V
Sbjct: 181 SVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  181 bits (461), Expect = 1e-52
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 8/189 (4%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGFV 100
            P F Q   S     GST+     + G P+P+++WF DG  + +       +++      
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIP 159
           L +  V ++++G Y+  A N  G A S A + +      P  V +   M    GS V + 
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124

Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGE 216
            +  G P P + + +D AE     + +I + G   SL +    P+DSG Y   A+N +G 
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184

Query: 217 DVAEGYLTV 225
             +   L V
Sbjct: 185 ATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  177 bits (452), Expect = 2e-51
 Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 9/190 (4%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-----G 191
           +AP        +    GS+        G P+P +SW +D           +  +      
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRI 249
            L +  +   +SG Y   A+N  G+  +   L V    APP F+QR  S T   GS  R+
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123

Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEG 307
              V G P P + ++ DG  + S        +G  + L++      D+G Y+  A NS G
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183

Query: 308 SAESVAMIRI 317
            A S A + +
Sbjct: 184 RATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  127 bits (322), Expect = 6e-34
 Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV---NAPPIFIQRPVSTTYSTGSTSRIT 66
           L I  V + + GRYS  A N +G       + V    APP F+QR  S T   GS  R+ 
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124

Query: 67  CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGS 124
             V G P P + ++ DG  + S        +G  + L++      D+G Y+  A NS G 
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184

Query: 125 AESVAMIRI 133
           A S A + +
Sbjct: 185 ATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-----G 375
           +AP        +    GS+        G P+P +SW +D           +  +      
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
            L +  +   +SG Y   A+N  G+  +   L V  E      P+  +   
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQ 111

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  178 bits (454), Expect = 1e-51
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFV 100
           +   P+      +        +   C VE +P P+++W  +   +   D   +   +G +
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
           L +  V +SD G+Y C A N  G A   +   +     P++   P +++   G    +PC
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVE-SCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122

Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
              G P P +SW K ++   E+    +  +GSLR++N+  +D+G YRC A N LG   ++
Sbjct: 123 TTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182

Query: 221 G-YLTV 225
              L V
Sbjct: 183 LVKLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  177 bits (451), Expect = 3e-51
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 3/184 (1%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLV 286
             P+      +        +   C VE +P P+++W  +   +   D   +   +G +L 
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
           +  V +SD G+Y C A N  G A   +   +     P++   P +++   G    +PC  
Sbjct: 66  ILSVEDSDDGIYCCTANNGVGGAVE-SCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124

Query: 347 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG- 405
            G P P +SW K ++   E+    +  +GSLR++N+  +D+G YRC A N LG   ++  
Sbjct: 125 MGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184

Query: 406 YLTV 409
            L V
Sbjct: 185 KLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  169 bits (431), Expect = 2e-48
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 5/182 (2%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GS 192
            +AP +      + A         C  +  P P ISW+++    ++  + +         
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN-KILIKLFDTRYSIRENGQL 63

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
           L + ++   D G+Y CTA+N +G  V           P   + P++     G  + + C 
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123

Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
             G+P P ++W    ++L  +  +     G  L ++ V++ DAG Y CVA+NS G+A S 
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRIAVLESG-SLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182

Query: 313 AM 314
            +
Sbjct: 183 LV 184

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  125 bits (317), Expect = 3e-33
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 2/126 (1%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
           +   L I  V+    G Y C A N  G        + V   P   + P++     G  + 
Sbjct: 60  NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAV 119

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           + C   G+P P ++W    ++L  +  +     G  L ++ V++ DAG Y CVA+NS G+
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG-SLRIHNVQKEDAGQYRCVAKNSLGT 178

Query: 125 AESVAM 130
           A S  +
Sbjct: 179 AYSKLV 184

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 85.2 bits (211), Expect = 4e-19
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GS 376
            +AP +      + A         C  +  P P ISW+++    ++  + +         
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN-KILIKLFDTRYSIRENGQL 63

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
           L + ++   D G+Y CTA+N +G  V            V+  P  +R P 
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGA-----LQVKMKPKITRPPI 108

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  189 bits (479), Expect = 4e-51
 Identities = 71/500 (14%), Positives = 144/500 (28%), Gaps = 75/500 (15%)

Query: 1   TDDRRSST-ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST 59
           T+   + T  + I+ + ++  GRY C  G  +     D+ + V+  P  +      T   
Sbjct: 67  TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGN--------------SLDSDDHVTYEHDG-----FV 100
           G T  I C  +     +    +                 + +    +  +  G     F 
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-------MRAPAG 153
           +V+N +R SDAG Y C A +   S +  A +++       +             +     
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVA 246

Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN------HKIHRTGSLRLYNIGPQDSGLYR 207
           +  +  C+        +  +                      + S+ +  +  +D+G Y 
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL 306

Query: 208 CTASNLLGEDVAEGYLTVT---GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTW 263
           C A +                        + P       GS+  + C            W
Sbjct: 307 CGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366

Query: 264 FHDGNSLDSDDHVTYEHDG--------------------FVLVLNGVRESDAGVYNCVAQ 303
                + +    +  + +G                    F ++LN +   DAG Y C+  
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN 426

Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC----KPDGEPLPRISWSKD 359
                  +V    I        +  P ++ A  G ++++PC    K          W+  
Sbjct: 427 GDTLWRTTVE---IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNT 483

Query: 360 EAEFVEDRNHKIHR----------TGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLT 408
             + +  ++    +            SL L  +   D G Y C           A  Y+ 
Sbjct: 484 GCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVA 543

Query: 409 VTGENSVEPAPHTSREPSAS 428
           V    +      +  +  A+
Sbjct: 544 VEERKAAGSRDVSLAKADAA 563

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  126 bits (316), Expect = 3e-30
 Identities = 44/321 (13%), Positives = 86/321 (26%), Gaps = 55/321 (17%)

Query: 142 VVKPFDMRAPAGSSVEIPCKPD---GEPLPRISWSKDEAEF------------------- 179
           +  P ++ +  G+SV I C           R  W +  A                     
Sbjct: 4   IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63

Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
               N   + T  + +  +   DSG Y+C           +  L      P  +      
Sbjct: 64  ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLE-VSQGPGLLNDTKVY 122

Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGN--------------SLDSDDHVTYEHDG--- 282
           T   G T  I C  +     +    +                 + +    +  +  G   
Sbjct: 123 TVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQ 182

Query: 283 --FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-------MR 333
             F +V+N +R SDAG Y C A +   S +  A +++       +             + 
Sbjct: 183 LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALG 242

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN------HKIHRTGSLRLYNIGPQDS 387
               +  +  C+        +  +                      + S+ +  +  +D+
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302

Query: 388 GLYRCTASNLLGEDVAEGYLT 408
           G Y C A +            
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQA 323

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 22/129 (17%)

Query: 326 VVKPFDMRAPAGSSVEIPCKPD---GEPLPRISWSKDEAEF------------------- 363
           +  P ++ +  G+SV I C           R  W +  A                     
Sbjct: 4   IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63

Query: 364 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSR 423
               N   + T  + +  +   DSG Y+C           +  L V+    +        
Sbjct: 64  ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123

Query: 424 EPSASKPSV 432
                  ++
Sbjct: 124 VDLGRTVTI 132

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  177 bits (451), Expect = 4e-51
 Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 13/208 (6%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDG 98
           T   PP  I++P +     G  +   C   G P P + W  +G  +      +   E  G
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 99  FVLVLN---GVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMR 149
            + +L         D   Y CVA+N  G A S      +          P +   P    
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 209
              G +V + CK  G P P I W K++ +          + G L++ N   +D G Y C 
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181

Query: 210 ASNLLGEDVAEG-YLTVTGAPPIFIQRP 236
           A N +G + ++   L V     +  +  
Sbjct: 182 AENSMGTEHSKATNLYVK-VRRVGTKHH 208

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  166 bits (423), Expect = 3e-47
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 13/209 (6%)

Query: 226 TGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDG 282
           TGA PP  I++P +     G  +   C   G P P + W  +G  +      +   E  G
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 283 FVLVLN---GVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMR 333
            + +L         D   Y CVA+N  G A S      +          P +   P    
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 393
              G +V + CK  G P P I W K++ +          + G L++ N   +D G Y C 
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181

Query: 394 ASNLLGEDVAEG-YLTVTGENSVEPAPHT 421
           A N +G + ++   L V          H 
Sbjct: 182 AENSMGTEHSKATNLYVKVRRVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  105 bits (264), Expect = 7e-26
 Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 22/147 (14%)

Query: 10  LVISGVQR----EHGGRYSCVAGNPAGVY---RGDLHVTVNA-----PPIFIQRPVSTTY 57
           + I  ++          Y CVA N  G        L +          P+  Q P +   
Sbjct: 63  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122

Query: 58  STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
             G T  +TC   G+P P + W  +   +D  +      DG  L +   RE D G Y CV
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG-FLQIENSREEDQGKYECV 181

Query: 118 AQNSEGSAESVAMIRINGHRAPRLVVK 144
           A+NS G+  S         +A  L VK
Sbjct: 182 AENSMGTEHS---------KATNLYVK 199

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 1   TDDRRSSTE---LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRP 52
             + R S +   L I   + E  G+Y CVA N  G  +    ++ V    +  +  
Sbjct: 153 MSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHH 208

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  176 bits (447), Expect = 1e-50
 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 11/195 (5%)

Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDG 282
              P F +   +      S + + C V GHP P + W+  G  + +D        ++   
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSS 339
             L++  V + DA VY   A N  GS    A + +        P+ +     + A  G  
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR----LYNIGPQDSGLYRCTAS 395
           V I     G+P P I+W K +     + ++++  T S         +  +D+G Y   A 
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 396 NLLGEDVAEGYLTVT 410
           N  G D     L V 
Sbjct: 182 NRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  175 bits (445), Expect = 2e-50
 Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 11/193 (5%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFV 100
            P F +   +      S + + C V GHP P + W+  G  + +D        ++     
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVE 157
           L++  V + DA VY   A N  GS    A + +        P+ +     + A  G  V 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR----LYNIGPQDSGLYRCTASNL 213
           I     G+P P I+W K +     + ++++  T S         +  +D+G Y   A N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 214 LGEDVAEGYLTVT 226
            G D     L V 
Sbjct: 184 FGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  167 bits (424), Expect = 1e-47
 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 12/195 (6%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHR---- 189
           G  AP    +  ++     S+  + CK  G P P + W +   E   +   ++I      
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV----TGAPPIFIQRPVSTTYSTGS 245
              L + ++   D+ +Y+  A+N  G       L V        P  ++   +     G 
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120

Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVA 302
              I     G P P +TW    + +D++ H           ++  NGV   DAG Y   A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 303 QNSEGSAESVAMIRI 317
           +N  G  +    + +
Sbjct: 181 KNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  122 bits (308), Expect = 6e-32
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP-----PIFIQRPVSTTYSTGSTSR 64
           L+I+ V  +    Y   A N  G   G   + V  P     P  ++   +     G    
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNS 121
           I     G P P +TW    + +D++ H           ++  NGV   DAG Y   A+N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 122 EGSAESVAMIRI 133
            G  +    + +
Sbjct: 184 FGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 85.9 bits (213), Expect = 3e-19
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHR---- 373
           G  AP    +  ++     S+  + CK  G P P + W +   E   +   ++I      
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
              L + ++   D+ +Y+  A+N  G       L V     +   P T     
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMG 112

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
              R  ++ +  +GV+R+  G Y   A N  G+ +  + + V
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  181 bits (459), Expect = 1e-50
 Identities = 54/315 (17%), Positives = 93/315 (29%), Gaps = 44/315 (13%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKP-------DGEPLPRISWSKD--EAEFVEDRNHKI 187
                           G  V + C            P   ++W K+        +   ++
Sbjct: 17  SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76

Query: 188 H-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV-STTYSTGS 245
             + G+L L     +DSG Y CT  N    D     L V      F+         +  +
Sbjct: 77  WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136

Query: 246 TSRITC-----LVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYN 299
           +  + C             ++ W+ D   LD D+           L+++ V   DAG Y 
Sbjct: 137 SGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYR 196

Query: 300 CVAQNSEGSAESVAMIRIN-------GHRAPRLVVKPFDMRAPAGSSVEIPCK---PDGE 349
           CV   +    +      I            P ++     + A  GS + IPCK     G 
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGT 256

Query: 350 PLPRISWSKDEAEFVED----------------RNHKIHRTGSLRLYNIGPQDSGL-YRC 392
           PL  + W       +E                  N++ +    L    +  +D  + ++C
Sbjct: 257 PLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKC 316

Query: 393 TASNLLGEDVAEGYL 407
              N L        +
Sbjct: 317 VVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  177 bits (451), Expect = 2e-49
 Identities = 49/320 (15%), Positives = 97/320 (30%), Gaps = 43/320 (13%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITC-------LVEGHPLPQMTWFHDGNSLD--SDD 90
               +     +         G    + C            P   +TW  + ++     ++
Sbjct: 13  GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE 72

Query: 91  HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRA 150
                     L L    + D+G Y C  +N+    +    +R+  +    L    +    
Sbjct: 73  ETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQIL 132

Query: 151 PAGSSVEIPC-----KPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDS 203
              +S  + C         +   +I W KD     +D    +    T  L ++++  +D+
Sbjct: 133 TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDA 192

Query: 204 GLYRCTASNLLGEDVAEGYLTV--------TGAPPIFIQRPVSTTYSTGSTSRITCLV-- 253
           G YRC  +            ++            P+ I    + + S GS   I C V  
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFL 252

Query: 254 -EGHPLPQMTWF-HDGNSLDSDDHVTYEHDG--------------FVLVLNGVRESDAGV 297
             G PL  M W+  +   ++S        +G                L+ + V   D  +
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312

Query: 298 -YNCVAQNSEGSAESVAMIR 316
            + CV  N+         ++
Sbjct: 313 DFKCVVHNTLSFQTLRTTVK 332

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  152 bits (384), Expect = 1e-40
 Identities = 42/249 (16%), Positives = 77/249 (30%), Gaps = 35/249 (14%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA-PPIFIQRPV-STTYSTGSTSRITC 67
           L +    +E  G Y C   N +   +  + + V      F+         +  ++  + C
Sbjct: 83  LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVC 142

Query: 68  -----LVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
                        ++ W+ D   LD D+           L+++ V   DAG Y CV   +
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFA 202

Query: 122 EGSAESVAMIRIN-------GHRAPRLVVKPFDMRAPAGSSVEIPCK---PDGEPLPRIS 171
               +      I            P ++     + A  GS + IPCK     G PL  + 
Sbjct: 203 HEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTML 262

Query: 172 WSKDEAEFVED----------------RNHKIHRTGSLRLYNIGPQDSGL-YRCTASNLL 214
           W       +E                  N++ +    L    +  +D  + ++C   N L
Sbjct: 263 WWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTL 322

Query: 215 GEDVAEGYL 223
                   +
Sbjct: 323 SFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  126 bits (317), Expect = 9e-32
 Identities = 30/218 (13%), Positives = 64/218 (29%), Gaps = 19/218 (8%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITC-------LVEGHPLPQMTWFHDGNSLD--SDDHVTY 278
           +     +         G    + C            P   +TW  + ++     ++    
Sbjct: 17  SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76

Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
                 L L    + D+G Y C  +N+    +    +R+  +    L    +       +
Sbjct: 77  WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136

Query: 339 SVEIPC-----KPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYR 391
           S  + C         +   +I W KD     +D    +    T  L ++++  +D+G YR
Sbjct: 137 SGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYR 196

Query: 392 CTASNLLGEDVAEGYLTVT---GENSVEPAPHTSREPS 426
           C  +            ++     +   E  P       
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK 234

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 90.5 bits (224), Expect = 1e-19
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 28/156 (17%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---------APPIFIQRPVST 55
           R +T L++  V  E  G Y CV        + ++  ++            P+ I    + 
Sbjct: 177 RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI 236

Query: 56  TYSTGSTSRITCLV---EGHPLPQMTWF-HDGNSLDSDDHVTYEHDG------------- 98
           + S GS   I C V    G PL  M W+  +   ++S        +G             
Sbjct: 237 SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYI 296

Query: 99  -FVLVLNGVRESDAGV-YNCVAQNSEGSAESVAMIR 132
              L+ + V   D  + + CV  N+         ++
Sbjct: 297 EVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 23/146 (15%), Positives = 37/146 (25%), Gaps = 15/146 (10%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKP-------DGEPLPRISWSKD--EAEFVEDRNHKI 371
                           G  V + C            P   ++W K+        +   ++
Sbjct: 17  SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76

Query: 372 H-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKP 430
             + G+L L     +DSG Y CT  N    D     L V      E         S  + 
Sbjct: 77  WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV-----FENTDAFLPFISYPQI 131

Query: 431 SVADDTIHMAVKLASREVDAAVNATI 456
                +  +     S       +  I
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKI 157

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  173 bits (441), Expect = 7e-50
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 11/195 (5%)

Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-- 282
           ++G  P   +     T   G  ++++C + G PLP + W+  G  L          DG  
Sbjct: 3   MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSS 339
             L +    + D GVY C+A N  G  E+ + + +     P+               GS+
Sbjct: 63  HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL--QATPQFHPGYPLKEKYYGAVGST 120

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQ-DSGLYRCTAS 395
           + +     G P+P ++W   +       N  I  T     L + N+  +  +G Y+   S
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180

Query: 396 NLLGEDVAEGYLTVT 410
           N+ G   A   + + 
Sbjct: 181 NVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  170 bits (433), Expect = 1e-48
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 11/191 (5%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLV 102
            P   +     T   G  ++++C + G PLP + W+  G  L          DG    L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSSVEIP 159
           +    + D GVY C+A N  G  E+ + + +     P+               GS++ + 
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLL--QATPQFHPGYPLKEKYYGAVGSTLRLH 124

Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQ-DSGLYRCTASNLLG 215
               G P+P ++W   +       N  I  T     L + N+  +  +G Y+   SN+ G
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184

Query: 216 EDVAEGYLTVT 226
              A   + + 
Sbjct: 185 TVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  167 bits (426), Expect = 7e-48
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 8/188 (4%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
           AP +  +  D+    G + ++ C+  G PLP I W +   E ++ R +K+   G   +L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV--STTYSTGSTSRITCL 252
           +     +D G+Y C A+N +GE      L +   P      P+      + GST R+  +
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126

Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEGSA 309
             G P+P MTWFH    L + +++T E+      L   N  R++ AG Y     N  G+ 
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186

Query: 310 ESVAMIRI 317
           +++  + I
Sbjct: 187 DAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  117 bits (296), Expect = 3e-30
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPV---STTYSTGSTSRIT 66
           L +   ++E  G Y+C+A N  G       + + A P F            + GST R+ 
Sbjct: 65  LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124

Query: 67  CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEG 123
            +  G P+P MTWFH    L + +++T E+      L   N  R++ AG Y     N  G
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184

Query: 124 SAESVAMIRI 133
           + +++  + I
Sbjct: 185 TVDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
           AP +  +  D+    G + ++ C+  G PLP I W +   E ++ R +K+   G   +L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
           +     +D G+Y C A+N +GE      L +       P  
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  174 bits (443), Expect = 8e-49
 Identities = 52/307 (16%), Positives = 89/307 (28%), Gaps = 37/307 (12%)

Query: 45  PPIFIQR--PVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSL--DSDDHVTYEHDGF 99
                +R   +    S        C +  +     +TW+ D +     ++          
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK--PFDMRAPAGSSVE 157
            L     +  D+G Y CV +NS          +   +           F  + P      
Sbjct: 63  KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGG 122

Query: 158 IPC------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
           + C      K +   LP++ W KD    + D  H       L + N+  +  G Y C AS
Sbjct: 123 LVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182

Query: 212 NLLGEDV----AEGYLTVTG----APPIFIQRPVST-TYSTGSTSRITCLVEGHPLPQMT 262
                                     P+ +     T     GS  ++ C V G       
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY 242

Query: 263 WFHDGNSLDSDDHVTYEHDGF--------------VLVLNGVRESD-AGVYNCVAQNSEG 307
           W  +G+ +D DD V  E                  VL ++ +        + C A+N+ G
Sbjct: 243 WKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302

Query: 308 SAESVAM 314
              +   
Sbjct: 303 IDAAYIQ 309

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  174 bits (442), Expect = 1e-48
 Identities = 54/303 (17%), Positives = 90/303 (29%), Gaps = 38/303 (12%)

Query: 144 KPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFV--EDRNHKIH-RTGSLRLYNIG 199
           +   + + A      PC  +  E    I+W KD+++     ++  +IH     L      
Sbjct: 11  EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70

Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI---QRPVSTTYSTGSTSRITCL---- 252
            +DSG Y C   N       +         P      Q              + C     
Sbjct: 71  VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130

Query: 253 --VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
              E + LP++ W+ D   L  D+          L++  V E   G Y C A  +    +
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKD-RLIVMNVAEKHRGNYTCHASYTYLGKQ 189

Query: 311 S-------VAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
                      +  N    P +V    + M    GS +++ C   G+      W  + + 
Sbjct: 190 YPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV 249

Query: 363 FVEDRN---------------HKIHRTGSLRLYNIGPQD-SGLYRCTASNLLGEDVAEGY 406
             ED                  +      L +  I  +     + C A N  G D A   
Sbjct: 250 IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQ 309

Query: 407 LTV 409
           L  
Sbjct: 310 LIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  150 bits (380), Expect = 2e-40
 Identities = 45/250 (18%), Positives = 71/250 (28%), Gaps = 35/250 (14%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-NAPPIFI---QRPVSTTYSTGSTSRI 65
           L     + E  G Y CV  N +   R  +        P      Q              +
Sbjct: 64  LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123

Query: 66  TCL------VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
            C        E + LP++ W+ D   L  D+          L++  V E   G Y C A 
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD-RLIVMNVAEKHRGNYTCHAS 182

Query: 120 NSEGSAES-------VAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRIS 171
            +    +           +  N    P +V    + M    GS +++ C   G+      
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY 242

Query: 172 WSKDEAEFVEDRN---------------HKIHRTGSLRLYNIGPQD-SGLYRCTASNLLG 215
           W  + +   ED                  +      L +  I  +     + C A N  G
Sbjct: 243 WKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302

Query: 216 EDVAEGYLTV 225
            D A   L  
Sbjct: 303 IDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  121 bits (305), Expect = 2e-30
 Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 17/206 (8%)

Query: 229 PPIFIQR--PVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSL--DSDDHVTYEHDGF 283
                +R   +    S        C +  +     +TW+ D +     ++          
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62

Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK--PFDMRAPAGSSVE 341
            L     +  D+G Y CV +NS          +   +           F  + P      
Sbjct: 63  KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGG 122

Query: 342 IPC------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
           + C      K +   LP++ W KD    + D  H       L + N+  +  G Y C AS
Sbjct: 123 LVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182

Query: 396 NLLGEDV----AEGYLTVTGENSVEP 417
                               EN    
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTR 208

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 93.6 bits (232), Expect = 6e-21
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 25/150 (16%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---------APPIFIQRPVST- 55
               L++  V  +H G Y+C A       +  +   +            P+ +     T 
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETM 219

Query: 56  TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--------------VL 101
               GS  ++ C V G       W  +G+ +D DD V  E                  VL
Sbjct: 220 EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVL 279

Query: 102 VLNGVRESD-AGVYNCVAQNSEGSAESVAM 130
            ++ +        + C A+N+ G   +   
Sbjct: 280 NISEIESRFYKHPFTCFAKNTHGIDAAYIQ 309

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 328 KPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFV--EDRNHKIH-RTGSLRLYNIG 383
           +   + + A      PC  +  E    I+W KD+++     ++  +IH     L      
Sbjct: 11  EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70

Query: 384 PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSV 432
            +DSG Y C   N       +          VE  P+      A     
Sbjct: 71  VEDSGHYYCVVRNSSYCLRIKISAKF-----VENEPNLCYNAQAIFKQK 114

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  170 bits (432), Expect = 2e-48
 Identities = 51/206 (24%), Positives = 75/206 (36%), Gaps = 16/206 (7%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDG- 98
           T   PP F + PV  T  +G  +   C   G P P++ W   G  + +    V    DG 
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 99  -FVLVLNGVR-ESDAGVYNCVAQNSEGSAESVAMIRING-----HRAPRLVVKPFDMRAP 151
             VL +  +R   D  +Y CVA N+ G       + +          P + + P      
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121

Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------TGSLRLYNIGPQDSGL 205
              +  + C   G P P I+W KD        N+   +       G+L++      D G 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181

Query: 206 YRCTASNLLGEDV-AEGYLTVTGAPP 230
           Y C A+N  G    A   L V G   
Sbjct: 182 YECVATNSAGTRYSAPANLYVRGTKH 207

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  162 bits (412), Expect = 9e-46
 Identities = 54/193 (27%), Positives = 75/193 (38%), Gaps = 16/193 (8%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---- 190
           G   PR    P D    +G      C+  G+P P+I W+K   +    R   I       
Sbjct: 3   GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 191 GSLRLYNIG-PQDSGLYRCTASNLLGEDVAEGYLTVTG------APPIFIQRPVSTTYST 243
             LR+  +  P+D  +Y C ASN +GE      LTV          P     P       
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-----HVTYEHDGFVLVLNGVRESDAGVY 298
             T+ + C   G+P P++TWF D   +D+ +               L +    ESD G Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182

Query: 299 NCVAQNSEGSAES 311
            CVA NS G+  S
Sbjct: 183 ECVATNSAGTRYS 195

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  162 bits (411), Expect = 1e-45
 Identities = 50/200 (25%), Positives = 74/200 (37%), Gaps = 16/200 (8%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDG--FV 284
            PP F + PV  T  +G  +   C   G P P++ W   G  + +    V    DG   V
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64

Query: 285 LVLNGVR-ESDAGVYNCVAQNSEGSAESVAMIRING-----HRAPRLVVKPFDMRAPAGS 338
           L +  +R   D  +Y CVA N+ G       + +          P + + P         
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124

Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------TGSLRLYNIGPQDSGLYRC 392
           +  + C   G P P I+W KD        N+   +       G+L++      D G Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184

Query: 393 TASNLLGEDV-AEGYLTVTG 411
            A+N  G    A   L V G
Sbjct: 185 VATNSAGTRYSAPANLYVRG 204

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  111 bits (279), Expect = 6e-28
 Identities = 36/135 (26%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 6   SSTELVISGVQR-EHGGRYSCVAGNPAGVYRGDLHVTVNA-------PPIFIQRPVSTTY 57
           S + L I  ++       Y CVA N  G       +TV          P     P     
Sbjct: 61  SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120

Query: 58  STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-----HVTYEHDGFVLVLNGVRESDAG 112
               T+ + C   G+P P++TWF D   +D+ +               L +    ESD G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180

Query: 113 VYNCVAQNSEGSAES 127
            Y CVA NS G+  S
Sbjct: 181 KYECVATNSAGTRYS 195

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 88.0 bits (218), Expect = 8e-20
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---- 374
           G   PR    P D    +G      C+  G+P P+I W+K   +    R   I       
Sbjct: 3   GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 375 GSLRLYNIG-PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
             LR+  +  P+D  +Y C ASN +GE      LTV  E+ +    
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF 108

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGV-YRGDLHVTVNAPPIFIQR 51
           S   L I   +    G+Y CVA N AG  Y    ++ V         
Sbjct: 165 SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  169 bits (429), Expect = 2e-48
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 4/186 (2%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLV 102
           +   F +      +  G  + + C V   P P ++W +    + +     +       L 
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPC 160
           +  + +SD G+Y C  +           I +  +  P + +  K F+  A  G  +   C
Sbjct: 61  ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120

Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
           +  G P P ISW ++     E+  + +      L + NI   D G Y C A+N  GED  
Sbjct: 121 RASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180

Query: 220 EGYLTV 225
           + +L V
Sbjct: 181 QAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  169 bits (429), Expect = 2e-48
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 4/186 (2%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLV 286
           +   F +      +  G  + + C V   P P ++W +    + +     +       L 
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPC 344
           +  + +SD G+Y C  +           I +  +  P + +  K F+  A  G  +   C
Sbjct: 61  ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120

Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
           +  G P P ISW ++     E+  + +      L + NI   D G Y C A+N  GED  
Sbjct: 121 RASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180

Query: 404 EGYLTV 409
           + +L V
Sbjct: 181 QAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  167 bits (424), Expect = 9e-48
 Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 5/185 (2%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRL 195
                          G   E+ C+    P P +SW     E     +++       +L++
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61

Query: 196 YNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGAPPIFI--QRPVSTTYSTGSTSRITCL 252
            NI   D G+YRC       GE      + +   PP     Q+  + T   G     +C 
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121

Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
             G P P ++WF +G  ++ ++    +     L +  +  SD G Y C A N  G  E  
Sbjct: 122 ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181

Query: 313 AMIRI 317
           A +++
Sbjct: 182 AFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  126 bits (319), Expect = 2e-33
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 10  LVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFI--QRPVSTTYSTGSTSRI 65
           L I  + +   G Y C     A   +   D+ V VN PP     Q+  + T   G     
Sbjct: 59  LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF 118

Query: 66  TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
           +C   G P P ++WF +G  ++ ++    +     L +  +  SD G Y C A N  G  
Sbjct: 119 SCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED 178

Query: 126 ESVAMIRI 133
           E  A +++
Sbjct: 179 EKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 83.3 bits (206), Expect = 2e-18
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRL 379
                          G   E+ C+    P P +SW     E     +++       +L++
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
            NI   D G+YRC        ++    + V     V PA    ++  
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN--VPPAISMPQKSF 106

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
           S+TEL +  +    GG Y C A N AG       + V  
Sbjct: 150 SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  169 bits (430), Expect = 4e-48
 Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 14/207 (6%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH----- 96
            + PP  ++ P     S G  + + C  EG P P + W+  G  +++D      H     
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 97  DGFVLVLN----GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAP 151
            G +  L          D GVY CVA+N  G A S  A + +           P D+   
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA-ILRDDFRQNPSDVMVA 124

Query: 152 AGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 210
            G    + C+P  G P P ISW KD +   +       R G L +      D+G Y C  
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVG 184

Query: 211 SNLLGEDVA-EGYLTVTGAPPIFIQRP 236
           +N++GE  +    LTV    P F++  
Sbjct: 185 TNMVGERESEVAELTVL-ERPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  161 bits (408), Expect = 3e-45
 Identities = 57/218 (26%), Positives = 83/218 (38%), Gaps = 19/218 (8%)

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
           G L     PP  ++ P     S G  + + C  EG P P + W+  G  +++D      H
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60

Query: 281 -----DGFVLVLN----GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPF 330
                 G +  L          D GVY CVA+N  G A S  A + +           P 
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA-ILRDDFRQNPS 119

Query: 331 DMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 389
           D+    G    + C+P  G P P ISW KD +   +       R G L +      D+G 
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGK 179

Query: 390 YRCTASNLLGEDVA-EGYLTVTGENSVEPAPHTSREPS 426
           Y C  +N++GE  +    LT      V   P   +  +
Sbjct: 180 YVCVGTNMVGERESEVAELT------VLERPSFVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  158 bits (400), Expect = 4e-44
 Identities = 64/207 (30%), Positives = 84/207 (40%), Gaps = 16/207 (7%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----T 190
              PR+V  P D+    G    + CK +G P P I W K       D++          +
Sbjct: 7   DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66

Query: 191 GSLRLYNIGP-----QDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTG 244
           GSL    I        D G+Y C A N LGE V  +  L V      F Q P     + G
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126

Query: 245 STSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
             + + C    GHP P ++W  DG+ LD  D       G  L++   R+SDAG Y CV  
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG-KLMITYTRKSDAGKYVCVGT 185

Query: 304 NSEGSAES-VAMIRINGHRAPRLVVKP 329
           N  G  ES VA + +     P  V   
Sbjct: 186 NMVGERESEVAELTV--LERPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  108 bits (271), Expect = 7e-27
 Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 8   TELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNA-PPIFIQRPVSTTYSTGSTSRI 65
             +V     R   G Y CVA N  G     D  + V      F Q P     + G  + +
Sbjct: 72  LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVM 131

Query: 66  TCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
            C    GHP P ++W  DG+ LD  D       G  L++   R+SDAG Y CV  N  G 
Sbjct: 132 ECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG-KLMITYTRKSDAGKYVCVGTNMVGE 190

Query: 125 AES-VAMIRINGHRAPRLVVKP 145
            ES VA + +     P  V   
Sbjct: 191 RESEVAELTV--LERPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 1   TDDRRSSTE---LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRP 52
             D R +     L+I+  ++   G+Y CV  N  G        +TV   P F++  
Sbjct: 155 DKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  170 bits (431), Expect = 2e-47
 Identities = 53/303 (17%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLP-----RISWSKD--------------------- 175
           V  P  +    G SV +PC      +      +++W++                      
Sbjct: 4   VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63

Query: 176 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN-LLGEDVAEGYLTVTGAPPIFIQ 234
             EFV  R     R  SLR++ +  +D G Y C       G    + +L V  A P    
Sbjct: 64  RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL-AKPQNTA 122

Query: 235 RPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLN 288
                  +        C+   G P  Q+TW  D   + +   V     G V      +L 
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPD 347
              + D     C  ++       +  + +  +  P + +  +D       +   + C   
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242

Query: 348 GEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
             P P   +WS             + +   L +  +    +    C  +N LG   AE  
Sbjct: 243 SNPEPTGYNWSTTMGPL---PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELT 299

Query: 407 LTV 409
           + V
Sbjct: 300 VQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  161 bits (407), Expect = 5e-44
 Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 12/225 (5%)

Query: 10  LVISGVQREHGGRYSCVAGN-PAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
           L + G++ E  G Y+C+    P G    D+ + V A P           +        C+
Sbjct: 81  LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 140

Query: 69  VE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNGVRESDAGVYNCVAQNSE 122
              G P  Q+TW  D   + +   V     G V      +L    + D     C  ++  
Sbjct: 141 STGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHES 200

Query: 123 GSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFV 180
                +  + +  +  P + +  +D       +   + C     P P   +WS       
Sbjct: 201 FEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL- 259

Query: 181 EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
                 + +   L +  +    +    C  +N LG   AE  + V
Sbjct: 260 --PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  156 bits (396), Expect = 1e-42
 Identities = 48/306 (15%), Positives = 87/306 (28%), Gaps = 40/306 (13%)

Query: 47  IFIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHDGNSLD-------------- 87
           + +Q P       G +  + C ++   +      Q+TW   G S                
Sbjct: 2   VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61

Query: 88  ------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 141
                     +  E     L + G+R  D G Y C+       + S   I +     P+ 
Sbjct: 62  SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS-VDIWLRVLAKPQN 120

Query: 142 VVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------SLR 194
             +   ++          C    G P  +I+W  D              +G         
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180

Query: 195 LYNIGPQDSGLYRCTASN--LLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
           L      D     C   +       +    LTV   P + I    +  Y   + + +TC 
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCD 240

Query: 253 VEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
              +P P    W      L           G  L++  V +       C   N+ G+ ++
Sbjct: 241 ARSNPEPTGYNWSTTMGPLPP----FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQA 296

Query: 312 VAMIRI 317
              +++
Sbjct: 297 ELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 97.5 bits (242), Expect = 3e-22
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 8/132 (6%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGST 62
            ++  ++    +  G   +C   + +      L V +     P + I    +  Y   + 
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234

Query: 63  SRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
           + +TC    +P P    W      L           G  L++  V +       C   N+
Sbjct: 235 ATLTCDARSNPEPTGYNWSTTMGPLPP----FAVAQGAQLLIRPVDKPINTTLICNVTNA 290

Query: 122 EGSAESVAMIRI 133
            G+ ++   +++
Sbjct: 291 LGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 92.9 bits (230), Expect = 1e-20
 Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 35/227 (15%)

Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHDGNSLD-------------- 271
           + +Q P       G +  + C ++   +      Q+TW   G S                
Sbjct: 2   VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61

Query: 272 ------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 325
                     +  E     L + G+R  D G Y C+       + S   I +     P+ 
Sbjct: 62  SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS-VDIWLRVLAKPQN 120

Query: 326 VVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------SLR 378
             +   ++          C    G P  +I+W  D              +G         
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180

Query: 379 LYNIGPQDSGLYRCTASN--LLGEDVAEGYLTVTGENSVEPAPHTSR 423
           L      D     C   +       +    LTV     V  + + + 
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNN 227

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  169 bits (429), Expect = 4e-47
 Identities = 46/286 (16%), Positives = 83/286 (29%), Gaps = 27/286 (9%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
           P +     ++   AG ++ + C         + W+              ++         
Sbjct: 13  PSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTY----FNEMVENKKNEWIQEKA 64

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
               +G Y C+ SN L   +   Y+ V     +F+   +       S + + C +    +
Sbjct: 65  EATRTGTYTCSNSNGLTSSI---YVFVRDPAKLFL-VGLPLFGKEDSDALVRCPLTDPQV 120

Query: 259 PQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM--- 314
            Q +    DG SL +D          + + N  R        C AQ       S      
Sbjct: 121 SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLK 180

Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKD----------EAEF 363
           +R      P + V         G +  + C            W K           +   
Sbjct: 181 VREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNS 240

Query: 364 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
               +    R  +L + +    DSG++ C A+N  G       L V
Sbjct: 241 WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  157 bits (398), Expect = 5e-43
 Identities = 45/290 (15%), Positives = 82/290 (28%), Gaps = 30/290 (10%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
           +PP             G T  +TC+        + W           +   E+     + 
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTY-----FNEMVENKKNEWIQ 61

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 163
                +  G Y C   N   S+     I +      +L +    +     S   + C   
Sbjct: 62  EKAEATRTGTYTCSNSNGLTSS-----IYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLT 116

Query: 164 GEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNI-GPQDSGLYRCTASNLLGEDVAEG 221
              + + S  + D      D     +    + + N+         RC A        ++ 
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK 176

Query: 222 Y-LTVTGA---PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHV 276
           + L V  A    P+      S     G T  + C ++         W            V
Sbjct: 177 FTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQV 236

Query: 277 TYEHDGF---------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            +               L ++  R  D+GV+ C A N+ GSA     +++
Sbjct: 237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  151 bits (381), Expect = 1e-40
 Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 18/240 (7%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
                   E +    +    G Y+C   N        ++V V  P       +       
Sbjct: 50  EMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGKED 106

Query: 61  STSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
           S + + C +    + Q +    DG SL +D          + + N  R        C AQ
Sbjct: 107 SDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQ 166

Query: 120 NSEGSAESVAM---IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKD 175
                  S      +R      P + V         G +  + C            W K 
Sbjct: 167 RDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKM 226

Query: 176 ----------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
                     +       +    R  +L + +    DSG++ C A+N  G       L V
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  166 bits (421), Expect = 1e-46
 Identities = 54/231 (23%), Positives = 80/231 (34%), Gaps = 25/231 (10%)

Query: 219 AEGYLTVTGAPPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
           A+    V    P + +              +T R  C   G+P P ++W  +G     + 
Sbjct: 1   ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60

Query: 275 HV---TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING---HRAPRLVVK 328
            +      H  + LV+  V  SD G Y CV +N  GS      + +     HR       
Sbjct: 61  RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120

Query: 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---------------KIHR 373
           P +  A  GS VE  CK   +  P I W K                           +  
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180

Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSRE 424
              LRL N+  +D G Y C A+N +G      +L+V G  + E     + E
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADE 231

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  164 bits (417), Expect = 4e-46
 Identities = 50/225 (22%), Positives = 77/225 (34%), Gaps = 28/225 (12%)

Query: 44  APPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEH 96
             P + +              +T R  C   G+P P ++W  +G     +  +      H
Sbjct: 10  GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING---HRAPRLVVKPFDMRAPAG 153
             + LV+  V  SD G Y CV +N  GS      + +     HR       P +  A  G
Sbjct: 70  QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129

Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---------------KIHRTGSLRLYNI 198
           S VE  CK   +  P I W K                           +     LRL N+
Sbjct: 130 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV 189

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI---FIQRPVSTT 240
             +D G Y C A+N +G      +L+V G        ++   + +
Sbjct: 190 SERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGS 234

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  109 bits (273), Expect = 8e-27
 Identities = 41/173 (23%), Positives = 51/173 (29%), Gaps = 23/173 (13%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA-----PPIFIQRPVSTTYS 58
           R     LV+  V     G Y+CV  N  G  R    + V       P +    P + T  
Sbjct: 68  RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAV 127

Query: 59  TGSTSRITCLVEGHPLPQMTWFHDGNSLDS--------------DDHVTYEHDGFVLVLN 104
            GS     C V     P + W        S                          L L 
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
            V E D G Y C A N  G AE    + ++G RA         + A    SV 
Sbjct: 188 NVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE----EELVEADEAGSVH 236

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L ++ V    GG Y C A N  GV      ++V+ P    +  V           +    
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELV----EADEAGSVHHHH 239

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  169 bits (428), Expect = 1e-46
 Identities = 41/307 (13%), Positives = 79/307 (25%), Gaps = 33/307 (10%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---------PQMTWFHDGNSLDSDDH 91
               P       ++   + G      C      L           + W   G +    + 
Sbjct: 25  KWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR 84

Query: 92  VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP 151
                +G + + N         Y C      G       +R +  + P  + + +++   
Sbjct: 85  RV--KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI-VRSHIRKPPSCIPETYELGTH 141

Query: 152 AGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 210
               +++ C     +    I+W K+  E + D         +L ++N   +DSG Y C  
Sbjct: 142 DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYV 201

Query: 211 SNLLGEDVAEGYLTVT--------GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM- 261
                    +  ++                +        + G  + ITC      L    
Sbjct: 202 HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDD 261

Query: 262 ---TWFHDGNSLDSDDHVTYEH-------DGFVLVLNGVRESDAG-VYNCVAQNSEGSAE 310
               W +    +   D   Y             L    V E   G  Y C   N      
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321

Query: 311 SVAMIRI 317
               + +
Sbjct: 322 LTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  162 bits (411), Expect = 2e-44
 Identities = 45/298 (15%), Positives = 82/298 (27%), Gaps = 34/298 (11%)

Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPR---------ISWSKDEAEFVEDRNHKIHRTGSL 193
               +  A  G      C P  + L           ++W K             +  G L
Sbjct: 34  GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN--GDL 91

Query: 194 RLYNIGPQDSG-LYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
            + N    DS   Y CT +   G+ V     +    PP  I               + C 
Sbjct: 92  WIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCG 151

Query: 253 V-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
           +        +TW+ +   L  D    Y   G  L+++     D+G Y+C     +   ++
Sbjct: 152 ILYAKHYNNITWYKNNQELIIDGT-KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210

Query: 312 ------VAMIRINGHRAPRL-VVKPFDMRAPAGSSVEIPCKPDGEPLP----RISWSKD- 359
                   ++ +   +  R  ++    +    G    I C      L      I W    
Sbjct: 211 DIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS 270

Query: 360 -------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG-LYRCTASNLLGEDVAEGYLTV 409
                     +    +       +L   N+  +  G  Y C   N   +      + +
Sbjct: 271 GWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  150 bits (379), Expect = 4e-40
 Identities = 36/248 (14%), Positives = 71/248 (28%), Gaps = 24/248 (9%)

Query: 1   TDDRRSSTELVISGVQRE-HGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYS 58
            + R  + +L I+         RY C      G   +G +   +  PP  I         
Sbjct: 82  LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTH 141

Query: 59  TGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
                 + C +        +TW+ +   L  D    Y   G  L+++     D+G Y+C 
Sbjct: 142 DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQNLIIHNPELEDSGRYDCY 200

Query: 118 AQNSEGSAES------VAMIRINGHRAPRL-VVKPFDMRAPAGSSVEIPCKPDGEPLP-- 168
               +   ++        ++ +   +  R  ++    +    G    I C      L   
Sbjct: 201 VHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVD 260

Query: 169 --RISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG-LYRCTASNLLGED 217
              I W              +    +       +L   N+  +  G  Y C   N   + 
Sbjct: 261 DVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK 320

Query: 218 VAEGYLTV 225
                + +
Sbjct: 321 TLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  122 bits (307), Expect = 1e-30
 Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 14/215 (6%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPL---------PQMTWFHDGNSLDSDDHVTY 278
            P       ++   + G      C      L           + W   G +    +    
Sbjct: 28  NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV- 86

Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
             +G + + N         Y C      G       +R +  + P  + + +++      
Sbjct: 87  -KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI-VRSHIRKPPSCIPETYELGTHDKY 144

Query: 339 SVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
            +++ C     +    I+W K+  E + D         +L ++N   +DSG Y C     
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYD 204

Query: 398 LGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSV 432
                 +  ++     +V P     R      P +
Sbjct: 205 DVRIKNDIVVSRCKILTVIP-SQDHRFKLILDPKI 238

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  164 bits (417), Expect = 4e-46
 Identities = 45/216 (20%), Positives = 69/216 (31%), Gaps = 24/216 (11%)

Query: 40  VTVNAPPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV--- 92
                 P +                +T +  C   G+P+P M W  +G     +  +   
Sbjct: 10  SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 69

Query: 93  TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING---HRAPRLVVKPFDMR 149
              +  + L++  V  SD G Y CV +N  GS      + +     HR       P +  
Sbjct: 70  KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 129

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--------------HKIHRTGSLRL 195
              G  VE  CK   +  P I W K   +                            L L
Sbjct: 130 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLAL 189

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
           +N+   D+G Y C  SN +G+     +LTV      
Sbjct: 190 FNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  163 bits (413), Expect = 1e-45
 Identities = 47/225 (20%), Positives = 74/225 (32%), Gaps = 30/225 (13%)

Query: 210 ASNLLGEDVAEGYLTVTGAPPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
           A + + E+            P +                +T +  C   G+P+P M W  
Sbjct: 2   AEDFVSENSNNK------RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK 55

Query: 266 DGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING--- 319
           +G     +  +      +  + L++  V  SD G Y CV +N  GS      + +     
Sbjct: 56  NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR 115

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN----------- 368
           HR       P +     G  VE  CK   +  P I W K   +                 
Sbjct: 116 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175

Query: 369 ---HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                      L L+N+   D+G Y C  SN +G+     +LTV 
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  106 bits (266), Expect = 5e-26
 Identities = 33/148 (22%), Positives = 45/148 (30%), Gaps = 18/148 (12%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA-----PPIFIQRPVSTTYS 58
           R     L++  V     G Y+CV  N  G      H+ V       P +    P + +  
Sbjct: 72  RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV 131

Query: 59  TGSTSRITCLVEGHPLPQMTWFHDGNSLDS-------------DDHVTYEHDGFVLVLNG 105
            G      C V     P + W        S                     +  VL L  
Sbjct: 132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFN 191

Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
           V E+DAG Y C   N  G A   A + +
Sbjct: 192 VTEADAGEYICKVSNYIGQANQSAWLTV 219

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 91.1 bits (226), Expect = 9e-21
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 301 VAQNSEGSAESVAMIRINGHRAPRLV----VKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
           +A++      +         RAP       ++      PA ++V+  C   G P+P + W
Sbjct: 1   MAEDFVSENSNN-------KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRW 53

Query: 357 SKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
            K+  EF ++     ++      SL + ++ P D G Y C   N  G      +L V   
Sbjct: 54  LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113

Query: 413 NSVEP 417
           +   P
Sbjct: 114 SRHRP 118

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 10/43 (23%), Positives = 12/43 (27%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
           L +  V     G Y C   N  G       +TV        R 
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  161 bits (409), Expect = 3e-45
 Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 19/210 (9%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE---HDG-- 98
             P  I+ P          + + C VEG P P + WF DG  + +++  ++     DG  
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67

Query: 99  -FVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
            F   + G +E D G Y CVA+N  G A S  A ++I         V+P D R   G + 
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA-VLRDDFRVEPKDTRVAKGETA 126

Query: 157 EIPC-KPDGEPLPRISWSKDE--------AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 207
            + C  P G P P + W KD           F      +I   G+L + N+ P D G Y+
Sbjct: 127 LLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYK 186

Query: 208 CTASNLLGEDVA-EGYLTVTGAPPIFIQRP 236
           C A NL+G   +    L V           
Sbjct: 187 CIAQNLVGTRESSYAKLIVQ-VKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  160 bits (405), Expect = 1e-44
 Identities = 60/205 (29%), Positives = 86/205 (41%), Gaps = 18/205 (8%)

Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-- 279
            L      P  I+ P          + + C VEG P P + WF DG  + +++  ++   
Sbjct: 2   PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61

Query: 280 -HDG---FVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRA 334
             DG   F   + G +E D G Y CVA+N  G A S  A ++I         V+P D R 
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA-VLRDDFRVEPKDTRV 120

Query: 335 PAGSSVEIPC-KPDGEPLPRISWSKDE--------AEFVEDRNHKIHRTGSLRLYNIGPQ 385
             G +  + C  P G P P + W KD           F      +I   G+L + N+ P 
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180

Query: 386 DSGLYRCTASNLLGEDVA-EGYLTV 409
           D G Y+C A NL+G   +    L V
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIV 205

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  149 bits (377), Expect = 4e-41
 Identities = 59/194 (30%), Positives = 83/194 (42%), Gaps = 20/194 (10%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G 191
           +++PR++  P D+         + CK +G+P P I W KD  E V     K HR     G
Sbjct: 7   YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDG 65

Query: 192 SLRLY----NIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGST 246
           +L  Y        QD G Y C A N +G+ V     L +      F   P  T  + G T
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGET 125

Query: 247 SRITCL-VEGHPLPQMTWFHDGNSLD--------SDDHVTYEHDGFVLVLNGVRESDAGV 297
           + + C   +G P P + W  DG  LD        +   V     G  L+++ V   D G 
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG-NLLISNVEPIDEGN 184

Query: 298 YNCVAQNSEGSAES 311
           Y C+AQN  G+ ES
Sbjct: 185 YKCIAQNLVGTRES 198

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  102 bits (256), Expect = 8e-25
 Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 9   ELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNA-PPIFIQRPVSTTYSTGSTSRIT 66
              + G + + GG Y CVA N  G        + +      F   P  T  + G T+ + 
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129

Query: 67  CL-VEGHPLPQMTWFHDGNSLD--------SDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
           C   +G P P + W  DG  LD        +   V     G  L+++ V   D G Y C+
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG-NLLISNVEPIDEGNYKCI 188

Query: 118 AQNSEGSAES 127
           AQN  G+ ES
Sbjct: 189 AQNLVGTRES 198

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 1   TDDRRSSTE---LVISGVQREHGGRYSCVAGNPAGVYRGDL-HVTVNAPPIFIQRP 52
              R    +   L+IS V+    G Y C+A N  G        + V          
Sbjct: 160 ASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  166 bits (423), Expect = 4e-45
 Identities = 63/313 (20%), Positives = 114/313 (36%), Gaps = 39/313 (12%)

Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK----------IHRTG 191
           +++  +        V + C  +GEP+P I+W +    F      K           H + 
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
           SL + ++   DSG Y C A++ +G      YL +    P FI          G+   I+C
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-YAPKFISNQTIYYSWEGNPINISC 122

Query: 252 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEG 307
            V+ +P   + W  D   L + +    +        +L +    ++D G YNC A N  G
Sbjct: 123 DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182

Query: 308 SAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEI---PCKPDGEPLPRISWSKDEAEF 363
           +     ++ +     +P  V     +   + ++ ++        G  +P   +   + + 
Sbjct: 183 TRFQEYILALADVPSSPYGVK----IIELSQTTAKVSFNKPDSHG-GVPIHHYQV-DVKE 236

Query: 364 VEDRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
           V     KI R+      + L N+ P  +   R  A N  G+          G+ S     
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ----------GDYSKIEIF 286

Query: 420 HTSREPSASKPSV 432
            T      S PS+
Sbjct: 287 QTLPVREPSPPSI 299

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  155 bits (393), Expect = 3e-41
 Identities = 63/344 (18%), Positives = 110/344 (31%), Gaps = 40/344 (11%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---------HVTYEH 96
           P  IQ   + T        + C  EG P+P++TW    +     +          V  +H
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
               L +  V+ SD+G Y+C A +  G  +    + I    AP+ +       +  G+ +
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118

Query: 157 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTAS 211
            I C     P   I W +D+          +          L +      D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

Query: 212 NLLGEDVAEGYLTVTGAP--PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS 269
           N +G    E  L +   P  P  ++  +     T +            +P   +  D   
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVK--IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKE 236

Query: 270 LDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 327
           + S+        G   ++VLN +  +        A N +G  +   +        P    
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF--QTLPVREP 294

Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI 371
            P  +     S              ++S +K      +D    I
Sbjct: 295 SPPSIHGQPSSGKSF----------KLSITK-----QDDGGAPI 323

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  126 bits (317), Expect = 3e-31
 Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 18/219 (8%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L I  V+    GRY C A +  G ++  +++ +   P FI          G+   I+C V
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124

Query: 70  EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGSA 125
           + +P   + W  D   L + +    +        +L +    ++D G YNC A N  G+ 
Sbjct: 125 KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR 184

Query: 126 ESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEI---PCKPDGEPLPRISWSKDEAEFVE 181
               ++ +     +P  V     +   + ++ ++        G  +P   +   + + V 
Sbjct: 185 FQEYILALADVPSSPYGVK----IIELSQTTAKVSFNKPDSHG-GVPIHHYQV-DVKEVA 238

Query: 182 DRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGE 216
               KI R+      + L N+ P  +   R  A N  G+
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ 277

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 20/185 (10%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP-VSTTYSTGSTSR 64
               L I+       GRY+C A N  G    +  + +   P       +     T +   
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVS 215

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSE 122
                    +P   +  D   + S+        G   ++VLN +  +        A N +
Sbjct: 216 FNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGK 275

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           G  +   +        P     P  +     S              ++S +K      +D
Sbjct: 276 GQGDYSKIEIF--QTLPVREPSPPSIHGQPSSGKSF----------KLSITK-----QDD 318

Query: 183 RNHKI 187
               I
Sbjct: 319 GGAPI 323

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  166 bits (420), Expect = 4e-45
 Identities = 47/392 (11%), Positives = 105/392 (26%), Gaps = 81/392 (20%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY-------------------EHDGFV 100
           G T  +TC        Q  W +        +  ++                   +   F 
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
           L++  ++  D+  Y C  ++ +   + +            L     D     G S+ +  
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQKEEVQLLVF---------GLTANS-DTHLLQGQSLTLTL 118

Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
           +      P +            R   I    +L +  +  QDSG + CT      +   +
Sbjct: 119 ESPPGSSPSVQCRSP-------RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171

Query: 221 GYLTVTGAPP----IFIQRPVSTTYS---------TGSTSRITCLVEGHPLPQ----MTW 263
             + V         ++ +      +S            +  +    E     +       
Sbjct: 172 IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDL 231

Query: 264 FHDGNSLDSDDHVTYEHDG------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            +   S+           G        L     + + +G      +   G          
Sbjct: 232 KNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV---- 287

Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 377
                  LVV              + C+  G   P++  S       +  N +   +   
Sbjct: 288 ------NLVV-----MRATQLQKNLTCEVWGPTSPKLMLSL------KLENKEAKVSKRE 330

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           +   +   ++G+++C  S+  G+ + E  + V
Sbjct: 331 KAVWVLNPEAGMWQCLLSD-SGQVLLESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  151 bits (383), Expect = 3e-40
 Identities = 45/333 (13%), Positives = 83/333 (24%), Gaps = 64/333 (19%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
           + +  L+I  ++ E    Y C   +     +  L   + A          T    G +  
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLT 115

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           +T        P +                       L ++ +   D+G + C    ++  
Sbjct: 116 LTLESPPGSSPSVQCRSPRGKNIQGGK--------TLSVSQLELQDSGTWTCTVLQNQKK 167

Query: 125 AESVAMIRINGHR-APRLVVKPFDMRAP-----------AGSSVEIPCKPDGEPLPR--- 169
            E    I +   + A  +V K    +                S E+  + +     +   
Sbjct: 168 VEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWI 227

Query: 170 -ISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQ--DSGLYRCTASNLLGEDVAEG 221
                  E            +        L L    PQ   SG          G+   E 
Sbjct: 228 TFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV 287

Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM--TWFHDGNSLDSDDHVTYE 279
            L V  A              T     +TC V G   P++  +   +             
Sbjct: 288 NLVVMRA--------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR---- 329

Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
                     V   +AG++ C+  +S       
Sbjct: 330 -----EKAVWVLNPEAGMWQCLLSDSGQVLLES 357

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  141 bits (355), Expect = 1e-36
 Identities = 41/304 (13%), Positives = 72/304 (23%), Gaps = 60/304 (19%)

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--------------------RNHKIHR 189
              G +VE+ C    +   +  W       +                      R+     
Sbjct: 6   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRI 249
              L + N+  +DS  Y C   +   E V      +T            T    G +  +
Sbjct: 66  NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANS--------DTHLLQGQSLTL 116

Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
           T        P +                       L ++ +   D+G + C    ++   
Sbjct: 117 TLESPPGSSPSVQCRSPRGKNIQGGK--------TLSVSQLELQDSGTWTCTVLQNQKKV 168

Query: 310 ESVAMIRINGHR-APRLVVKPFDMRAP-----------AGSSVEIPCKPDGEPLPR---- 353
           E    I +   + A  +V K    +                S E+  + +     +    
Sbjct: 169 EFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWIT 228

Query: 354 ISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQ--DSGLYRCTASNLLGEDVAEGY 406
                 E            +        L L    PQ   SG          G+   E  
Sbjct: 229 FDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVN 288

Query: 407 LTVT 410
           L V 
Sbjct: 289 LVVM 292

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  113 bits (283), Expect = 3e-27
 Identities = 28/208 (13%), Positives = 58/208 (27%), Gaps = 37/208 (17%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY-------------------EHDGFV 284
           G T  +TC        Q  W +        +  ++                   +   F 
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
           L++  ++  D+  Y C  ++ +   + +            L     D     G S+ +  
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQKEEVQLLVF---------GLTANS-DTHLLQGQSLTLTL 118

Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
           +      P +            R   I    +L +  +  QDSG + CT      +   +
Sbjct: 119 ESPPGSSPSVQCRSP-------RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171

Query: 405 GYLTVTGENSVEPAPHTSREPSASKPSV 432
             + V        +    +E    + S 
Sbjct: 172 IDIVVLA-FQKASSIVYKKEGEQVEFSF 198

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 95.2 bits (236), Expect = 5e-21
 Identities = 26/246 (10%), Positives = 62/246 (25%), Gaps = 46/246 (18%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST---- 59
            +    L +S ++ +  G ++C            + + V A                   
Sbjct: 138 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFS 197

Query: 60  ----------GSTSRITCLVEGHPLPQ----MTWFHDGNSLDSDDHVTYEHDG------F 99
                       +  +    E     +        +   S+           G       
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHL 257

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
            L     + + +G      +   G                 LVV              + 
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEV----------NLVV-----MRATQLQKNLT 302

Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
           C+  G   P++  S       +  N +   +   +   +   ++G+++C  S+  G+ + 
Sbjct: 303 CEVWGPTSPKLMLSL------KLENKEAKVSKREKAVWVLNPEAGMWQCLLSD-SGQVLL 355

Query: 220 EGYLTV 225
           E  + V
Sbjct: 356 ESNIKV 361

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  158 bits (402), Expect = 2e-44
 Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 28/219 (12%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
             V         P S     G   ++ C   GHP  Q  WF     + +        +  
Sbjct: 13  GLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------NTS 65

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESV--------------AMIRINGHRAPRLVVKP 145
            L+ N V   DAG Y C   N+     S                 +        ++ V+P
Sbjct: 66  ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125

Query: 146 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 205
              +   GS++ + C   G P+P   W K+E     +            +  +  +  G 
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYVDLEHQGT 179

Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTG 244
           Y C   N      ++    +       +  P +   +T 
Sbjct: 180 YWCHVYNDRDSQDSKKVEIIIDELN-NLGHPDNKEQTTD 217

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  152 bits (385), Expect = 4e-42
 Identities = 45/231 (19%), Positives = 69/231 (29%), Gaps = 31/231 (13%)

Query: 123 GSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
           GS+            R  ++ V P      AG  V++ C+  G P  +  W K   E   
Sbjct: 2   GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61

Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAP----------- 229
                   T  L    +  +D+G Y C  +N    +      L V   P           
Sbjct: 62  GN------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVS 115

Query: 230 ---PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
                    P S     GST  + C+  G P+P   WF +   L  +          + +
Sbjct: 116 ESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYM 168

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 337
           +  V     G Y C   N   S +S  +  I        +  P +      
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEII--IDELNNLGHPDNKEQTTD 217

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  147 bits (372), Expect = 2e-40
 Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 32/214 (14%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
                  P S     G   ++ C   GHP  Q  WF     + + +          L+ N
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------TSELIFN 70

Query: 289 GVRESDAGVYNCVAQNSEGSAESV--------------AMIRINGHRAPRLVVKPFDMRA 334
            V   DAG Y C   N+     S                 +        ++ V+P   + 
Sbjct: 71  AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130

Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 394
             GS++ + C   G P+P   W K+E     +            +  +  +  G Y C  
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYVDLEHQGTYWCHV 184

Query: 395 SNLLGEDVAEGYLTVTGENSVEPAPHTSREPSAS 428
            N      ++    +     ++   +     +  
Sbjct: 185 YNDRDSQDSKKVEII-----IDELNNLGHPDNKE 213

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  110 bits (277), Expect = 1e-27
 Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 25/164 (15%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAG----------------VYRGDLHVTVNAPPIFI 49
           +++EL+ + V  +  G Y C   N                    ++  +     +     
Sbjct: 63  NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122

Query: 50  QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 109
             P S     GST  + C+  G P+P   WF +   L  +          + ++  V   
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMVPYVDLE 175

Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
             G Y C   N   S +S  +  I        +  P +      
Sbjct: 176 HQGTYWCHVYNDRDSQDSKKVEII--IDELNNLGHPDNKEQTTD 217

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 80.7 bits (199), Expect = 3e-17
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 307 GSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 365
           GS+            R  ++ V P      AG  V++ C+  G P  +  W K   E   
Sbjct: 2   GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61

Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTV 409
                   T  L    +  +D+G Y C  +N    +      L V
Sbjct: 62  G------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  157 bits (399), Expect = 3e-44
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 12/191 (6%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDRNHKI------HR 189
           R  ++ + P       G S    C+  G+     ISW     E +     +I        
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
           + +L +YN    D+G+Y+C  +   G    A   + +     +F   P    +  G  + 
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAV 119

Query: 249 ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 306
           I C V     P + W H G  +    D       +   L + G++++D G Y C  +   
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILA 178

Query: 307 GSAESVAMIRI 317
               +   I++
Sbjct: 179 RGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  156 bits (395), Expect = 1e-43
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 9/190 (4%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDSDDH----VTYEHDG 98
                  P     S G +    C V G      ++WF  +G  L  +      V  + D 
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 99  FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 158
             L +      DAG+Y CV    +G+    A + +   +       P       G    I
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

Query: 159 PCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216
            C       P I W     + +  ++ +  +     L++  I   D G YRC    L   
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 217 DVAEGYLTVT 226
           ++    + V 
Sbjct: 181 EINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  156 bits (395), Expect = 1e-43
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 9/190 (4%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDSDDH----VTYEHDG 282
                  P     S G +    C V G      ++WF  +G  L  +      V  + D 
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 342
             L +      DAG+Y CV    +G+    A + +   +       P       G    I
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

Query: 343 PCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
            C       P I W     + +  ++ +  +     L++  I   D G YRC    L   
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 401 DVAEGYLTVT 410
           ++    + V 
Sbjct: 181 EINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  119 bits (300), Expect = 5e-31
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 4/127 (3%)

Query: 10  LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
           L I     +  G Y CV     G      ++V +    +F   P    +  G  + I C 
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123

Query: 69  VEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
           V     P + W H G  +    D       +   L + G++++D G Y C  +       
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARGEI 182

Query: 127 SVAMIRI 133
           +   I++
Sbjct: 183 NFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 82.2 bits (203), Expect = 5e-18
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDRNHKI------HR 373
           R  ++ + P       G S    C+  G+     ISW     E +     +I        
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
           + +L +YN    D+G+Y+C  +   G    E  + V     +         P+
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQS-EATVNVK----IFQKLMFKNAPT 108

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  158 bits (400), Expect = 1e-43
 Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 22/269 (8%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
            +   +P   +     T  + C V   P      WF +G +  +              + 
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP--------SYRIT 53

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD- 163
               +D+G Y C    S  S      I++  HR   L+++        G  + + C    
Sbjct: 54  SASVNDSGEYRCQRGLSGRSDP----IQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWK 108

Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 223
            + +  + + ++   F        H   +L +       +G Y C+         A   +
Sbjct: 109 DKLVYNVLYYRNGKAF-----KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISV 163

Query: 224 TVTGAPPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
           TV    P   +   V++    G+   ++C  +          +  +       +   +  
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLY-FSFYMGSKTLRGRNTS 222

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAES 311
               +   R  D+G+Y C A   +G+   
Sbjct: 223 SEYQILTARREDSGLYWCEAATEDGNVLK 251

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  153 bits (388), Expect = 6e-42
 Identities = 42/279 (15%), Positives = 82/279 (29%), Gaps = 24/279 (8%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIH-RTGSLRLY 196
             + ++P  +      +V + C+    P      W  +               T S R+ 
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN--------GTATQTSTPSYRIT 53

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH 256
           +    DSG YRC        D     L +     + +Q   S  ++ G    + C     
Sbjct: 54  SASVNDSGEYRCQRGLSGRSDPI--QLEIH-RGWLLLQVS-SRVFTEGEPLALRCHAWKD 109

Query: 257 -PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315
             +  + ++ +G +        + H    L +     S  G Y+C          +   +
Sbjct: 110 KLVYNVLYYRNGKAFK------FFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISV 163

Query: 316 RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG 375
            +       ++          G+ V + C+                          + + 
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS 223

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDV---AEGYLTVTG 411
             ++     +DSGLY C A+   G  +    E  L V G
Sbjct: 224 EYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  132 bits (334), Expect = 1e-34
 Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 13/228 (5%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
           + S+    I+       G Y C  G         + + ++   + +Q   S  ++ G   
Sbjct: 44  QTSTPSYRITSASVNDSGEYRCQRGLSGRSDP--IQLEIHRGWLLLQVS-SRVFTEGEPL 100

Query: 64  RITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
            + C       +  + ++ +G +        + H    L +     S  G Y+C      
Sbjct: 101 ALRCHAWKDKLVYNVLYYRNGKAFK------FFHWNSNLTILKTNISHNGTYHCSGMGKH 154

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
               +   + +       ++          G+ V + C+                     
Sbjct: 155 RYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSK 214

Query: 183 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV---AEGYLTVTG 227
                + +   ++     +DSGLY C A+   G  +    E  L V G
Sbjct: 215 TLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 3   DRRSSTELVISGVQREHGGRYSCVAGNPAGVYR---GDLHVTV 42
            R +S+E  I   +RE  G Y C A    G       +L + V
Sbjct: 218 GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  153 bits (388), Expect = 8e-43
 Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 14/192 (7%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS--WSKDEAEFVEDRNHKIHRTGSL 193
              PR+V     +   +   V + C         +   W+K+  E    R  K       
Sbjct: 1   QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEY 58

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV 253
           R+     +DSG Y C    +     A   + V  A P       S   + G  + + C  
Sbjct: 59  RINKPRAEDSGEYHCVYHFV-SAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKS 116

Query: 254 EGHPLPQMTWFHDGNSLDSDD-------HVTYEHDGFVL-VLNGVRESDAGVYNCVAQNS 305
            G+P P+  W    N +  +         +  + +   L ++N     D G Y C A NS
Sbjct: 117 VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176

Query: 306 EGSAESVAMIRI 317
            GSA    ++R+
Sbjct: 177 IGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  146 bits (371), Expect = 1e-40
 Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 17/193 (8%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVTYEHDGFVL 101
             P  +         +     + C +       M   W  +G  L +             
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN---ASNMEY 58

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
            +N  R  D+G Y+CV  +   + ++ A I +    AP +           G    + CK
Sbjct: 59  RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA--APDITGHKRSENKNEGQDAMMYCK 115

Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNI-GPQDSGLYRCTASN 212
             G P P   W K E    E+ ++   R           L + N+   +D G Y C A+N
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175

Query: 213 LLGEDVAEGYLTV 225
            +G       L V
Sbjct: 176 SIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  146 bits (371), Expect = 1e-40
 Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 17/193 (8%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVTYEHDGFVL 285
             P  +         +     + C +       M   W  +G  L +             
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN---ASNMEY 58

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
            +N  R  D+G Y+CV  +   + ++ A I +    AP +           G    + CK
Sbjct: 59  RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA--APDITGHKRSENKNEGQDAMMYCK 115

Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNI-GPQDSGLYRCTASN 396
             G P P   W K E    E+ ++   R           L + N+   +D G Y C A+N
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175

Query: 397 LLGEDVAEGYLTV 409
            +G       L V
Sbjct: 176 SIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  122 bits (307), Expect = 5e-32
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
           T    S+ E  I+  + E  G Y CV  +     + +  + V A P       S   + G
Sbjct: 49  TRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEG 107

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDD-------HVTYEHDGFVL-VLNGVRESDAG 112
             + + C   G+P P+  W    N +  +         +  + +   L ++N     D G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167

Query: 113 VYNCVAQNSEGSAESVAMIRI 133
            Y C A NS GSA    ++R+
Sbjct: 168 EYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS--WSKDEAEFVEDRNHKIHRTGSL 377
              PR+V     +   +   V + C         +   W+K+  E    R  K       
Sbjct: 1   QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEY 58

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           R+     +DSG Y C     +    A   + V
Sbjct: 59  RINKPRAEDSGEYHCVYHF-VSAPKANATIEV 89

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  157 bits (398), Expect = 1e-42
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 12/197 (6%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIH----R 189
           G  AP    +  ++     S+  + CK  G P P + W +   E   +   ++I      
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP----PIFIQRPVSTTYSTGS 245
              L + ++   D+ +Y+  A+N  G       L V        P  ++   +     G 
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120

Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVA 302
              I     G P P +TW    + +D++ H           ++  NGV   DAG Y   A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 303 QNSEGSAESVAMIRING 319
           +N  G  +    + +  
Sbjct: 181 KNRFGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  155 bits (393), Expect = 4e-42
 Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 11/196 (5%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFV-- 100
            P F +   +      S + + C V GHP P + W+  G  +  D   +   E  G    
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH---RAPRLVVKPFDMRAPAGSSVE 157
           L++  V + DA VY   A N  GS    A + +        P+ +     + A  G  V 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASNL 213
           I     G+P P I+W K +     + ++++  T S    +    +  +D+G Y   A N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 214 LGEDVAEGYLTVTGAP 229
            G D     L V   P
Sbjct: 184 FGIDQKTVELDVADVP 199

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  152 bits (385), Expect = 5e-41
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 11/194 (5%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFV-- 284
            P F +   +      S + + C V GHP P + W+  G  +  D   +   E  G    
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH---RAPRLVVKPFDMRAPAGSSVE 341
           L++  V + DA VY   A N  GS    A + +        P+ +     + A  G  V 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASNL 397
           I     G+P P I+W K +     + ++++  T S    +    +  +D+G Y   A N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 398 LGEDVAEGYLTVTG 411
            G D     L V  
Sbjct: 184 FGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  111 bits (279), Expect = 5e-27
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP-----PIFIQRPVSTTYSTGSTSR 64
           L+I+ V  +    Y   A N  G   G   + V  P     P  ++   +     G    
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNS 121
           I     G P P +TW    + +D++ H           ++  NGV   DAG Y   A+N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 122 EGSAESVAMIRING 135
            G  +    + +  
Sbjct: 184 FGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 84.8 bits (210), Expect = 6e-18
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIH----R 373
           G  AP    +  ++     S+  + CK  G P P + W +   E   +   ++I      
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
              L + ++   D+ +Y+  A+N  G       L V     +    
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
              R  ++ +  +GV+R+  G Y   A N  G+ +  + + V   P
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  153 bits (388), Expect = 1e-42
 Identities = 41/203 (20%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-----------EDRNHKI 187
             +     D++ P   S+++ C   G   PR+ W   +                  +   
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG-APPIFIQRPVSTTYSTGST 246
             +  +   ++  +D+G Y C  S   G++  E  + +T   PP      V ++ + G+ 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 247 SRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV----------LVLNGVRESDA 295
           + +TC   +G P  + +WF DG S+ + D                    L+ + V   D+
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181

Query: 296 GVYNCVAQNSEGSAESVAMIRIN 318
           G Y C AQN  G+A       ++
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  143 bits (361), Expect = 5e-39
 Identities = 33/208 (15%), Positives = 53/208 (25%), Gaps = 22/208 (10%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----------NSLDSDDHVTYE 95
                           + ++TC   G   P++ W              + + +       
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 96  HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 155
                +  + V   D G Y C+     G       I +     P             G+ 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 156 VEIPCK-PDGEPLPRISWSKDEAE-----------FVEDRNHKIHRTGSLRLYNIGPQDS 203
             + C   DG P    SW KD              F+        ++G L    +   DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181

Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPPI 231
           G Y C A N  G  +      +      
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVELN 209

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  140 bits (353), Expect = 6e-38
 Identities = 33/203 (16%), Positives = 53/203 (26%), Gaps = 22/203 (10%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----------NSLDSDDHVTYE 279
                           + ++TC   G   P++ W              + + +       
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 339
                +  + V   D G Y C+     G       I +     P             G+ 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 340 VEIPCK-PDGEPLPRISWSKDEAE-----------FVEDRNHKIHRTGSLRLYNIGPQDS 387
             + C   DG P    SW KD              F+        ++G L    +   DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181

Query: 388 GLYRCTASNLLGEDVAEGYLTVT 410
           G Y C A N  G  +      + 
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  117 bits (294), Expect = 5e-30
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 13/142 (9%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
           SS+ +  S V R+  G Y+C+     G       +H+TV  PP      V ++ + G+ +
Sbjct: 63  SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRA 122

Query: 64  RITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV----------LVLNGVRESDAG 112
            +TC   +G P  + +WF DG S+ + D                    L+ + V   D+G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182

Query: 113 VYNCVAQNSEGSAESVAMIRIN 134
            Y C AQN  G+A       ++
Sbjct: 183 EYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFI 49
            S +L+   V     G Y C A N  G         ++A  + +
Sbjct: 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 210

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  149 bits (378), Expect = 1e-41
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 13/188 (6%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGF 99
           A    +  PV  T S G   ++ C VEG   P + W  DG  + + D     V+ +H   
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
            L L  V  SDAG Y C  ++   +  S   + +     P   V+P D+  P  +  ++ 
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEIS-QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119

Query: 160 CKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 218
           C+  G P P  I W +   +                L   G   S ++ C A NL G   
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIGGPAP------SPSVLNVTGVTQSTMFSCEAHNLKGLAS 173

Query: 219 AE-GYLTV 225
           +    + +
Sbjct: 174 SRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  149 bits (378), Expect = 1e-41
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 13/188 (6%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGF 283
           A    +  PV  T S G   ++ C VEG   P + W  DG  + + D     V+ +H   
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 343
            L L  V  SDAG Y C  ++   +  S   + +     P   V+P D+  P  +  ++ 
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEIS-QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119

Query: 344 CKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
           C+  G P P  I W +   +                L   G   S ++ C A NL G   
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIGGPAP------SPSVLNVTGVTQSTMFSCEAHNLKGLAS 173

Query: 403 AE-GYLTV 409
           +    + +
Sbjct: 174 SRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  112 bits (283), Expect = 7e-29
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 10  LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
           L +  V+R   GRY C   +         + +TV   P F   P        +  +++C 
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121

Query: 69  VEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127
             G P P  + W+     +               VLN    + + +++C A N +G A S
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGPAPSP-------SVLNVTGVTQSTMFSCEAHNLKGLASS 174

Query: 128 VA 129
             
Sbjct: 175 RT 176

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  153 bits (388), Expect = 3e-41
 Identities = 51/322 (15%), Positives = 89/322 (27%), Gaps = 42/322 (13%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDSD---------- 89
            P   +Q   S     G+   + C          + Q+TW    N    +          
Sbjct: 13  DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72

Query: 90  -------DHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
                  + V +    F    + L+ +   D GVY C            + + +     P
Sbjct: 73  SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE-SQLNLTVMAKP 131

Query: 140 RLVVKPFDMRAPA-----GSSVEIPCK-PDGEPLPRISWSKD-----EAEFVEDRNHKIH 188
              ++       A        +   C   +G+P   +SW        E + + + N  + 
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191

Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
                RL            C  +  +        L V   P + I+      Y      +
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251

Query: 249 ITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
           +TC  + +P   +  W     SL          +  +     +  S AG Y C A N  G
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQ---NRTLFFKGPINYSLAGTYICEATNPIG 308

Query: 308 SAESVAMIRINGHRAPRLVVKP 329
           +      + I    A  L    
Sbjct: 309 TRSGQVEVNI--TEAAALEHHH 328

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  151 bits (382), Expect = 2e-40
 Identities = 49/324 (15%), Positives = 96/324 (29%), Gaps = 41/324 (12%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCK----PDGEPLPRISWSKDEA------------- 177
           G    ++V     M    G+ V + C          + +++W K                
Sbjct: 11  GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70

Query: 178 --EFVEDRNHKIH------RTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGA 228
               +     ++         G++RL  +  +D G+Y C  +    G   ++  LTV   
Sbjct: 71  GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK 130

Query: 229 PPIFIQRP----VSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           P  +I+       +           TC    G P   ++W            +   +   
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV 190

Query: 284 ----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGS 338
                  L   RE+      C+        +    + +     P + ++ FD        
Sbjct: 191 TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY--EPEVTIEGFDGNWYLQRM 248

Query: 339 SVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
            V++ CK D  P      W+       +    +           I    +G Y C A+N 
Sbjct: 249 DVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTYICEATNP 306

Query: 398 LGEDVAEGYLTVTGENSVEPAPHT 421
           +G    +  + +T   ++E   H 
Sbjct: 307 IGTRSGQVEVNITEAAALEHHHHH 330

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  144 bits (364), Expect = 4e-38
 Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 17/244 (6%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST 59
                +   + +S ++ E  G Y C  A  P G     L++TV A P             
Sbjct: 85  LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRA 144

Query: 60  GSTSR-----ITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRES 109
                      TC    G P   ++W            +   +          L   RE+
Sbjct: 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREA 204

Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLP 168
                 C+        +    + +     P + ++ FD         V++ CK D  P  
Sbjct: 205 HQQSLACIVNYHMDRFKESLTLNVQY--EPEVTIEGFDGNWYLQRMDVKLTCKADANPPA 262

Query: 169 -RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
               W+       +    +           I    +G Y C A+N +G    +  + +T 
Sbjct: 263 TEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE 320

Query: 228 APPI 231
           A  +
Sbjct: 321 AAAL 324

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  100 bits (251), Expect = 3e-23
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 7/142 (4%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF-IQRPVSTTYSTGSTSR 64
             +   +   +  H    +C+       ++  L + V   P   I+      Y      +
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251

Query: 65  ITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
           +TC  + +P   +  W     SL          +  +     +  S AG Y C A N  G
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQ---NRTLFFKGPINYSLAGTYICEATNPIG 308

Query: 124 SAESVAMIRINGHRAPRLVVKP 145
           +      + I    A  L    
Sbjct: 309 TRSGQVEVNI--TEAAALEHHH 328

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 88.3 bits (218), Expect = 6e-19
 Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 36/221 (16%)

Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDSD------- 273
           +   P   +Q   S     G+   + C          + Q+TW    N    +       
Sbjct: 10  MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69

Query: 274 ----------DHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 320
                     + V +    F    + L+ +   D GVY C            + + +   
Sbjct: 70  MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE-SQLNLTVM 128

Query: 321 RAPRLVVKPFDMRAPA-----GSSVEIPCK-PDGEPLPRISWSKD-----EAEFVEDRNH 369
             P   ++       A        +   C   +G+P   +SW        E + + + N 
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188

Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            +      RL            C  +  +        L V 
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 15/48 (31%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
           ++ T      +     G Y C A NP G   G + V +          
Sbjct: 281 QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHH 328

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  151 bits (383), Expect = 5e-41
 Identities = 40/283 (14%), Positives = 77/283 (27%), Gaps = 26/283 (9%)

Query: 56  TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD-GFVLVLNGVRESDAGVY 114
             +  ST  +TC         + W         +     +     VL L  +   D G Y
Sbjct: 11  VLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66

Query: 115 NCVAQNSEGSAES-VAMIRINGHRAPRLVVK----PFDMRAPAGSSVEIPCKPDGEPLPR 169
            C   +S G        + I         +        +     + + IPC+    P   
Sbjct: 67  FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLV 125

Query: 170 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT--VTG 227
           ++  +      +  +  +      +    G  +   Y C  +    E  ++ Y    +  
Sbjct: 126 VTLHE------KKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQV 179

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN-------SLDSDDHVTYEH 280
           +        V T    G    + C+V G+ +    W +           +         H
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
              +L +      D+G Y C    S    +    I I    + 
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  147 bits (373), Expect = 1e-39
 Identities = 47/289 (16%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 141 LVVKPF--DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIHRTGSLRLY 196
           LVV P   ++     S+  + C         + W +   E  ++  +      +  L L 
Sbjct: 1   LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLT 56

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEG---YLTVTGAPPIFIQRPVSTTYST---GSTSRIT 250
           N+   D+G Y CT ++  G +  E    Y+ V      F+       +      +   I 
Sbjct: 57  NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIP 116

Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
           C V   P   +T       +           GF  +       +   Y C     +   +
Sbjct: 117 CRVTD-PQLVVTLHEKKGDVALP-VPYDHQRGFSGI------FEDRSYICKTTIGDREVD 168

Query: 311 SVAM-IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--------EA 361
           S A  +      +  + V         G ++ + C   G  +    W+          E 
Sbjct: 169 SDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEP 228

Query: 362 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                 +   H    L + +   +DSG Y C  +  + +   E  + +T
Sbjct: 229 VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  130 bits (329), Expect = 8e-34
 Identities = 38/250 (15%), Positives = 73/250 (29%), Gaps = 25/250 (10%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD---LHVTVNAPPI-FIQRPVSTT 56
            D   SS  L ++ +     G Y C   +  G+   +   L++ V  P + F+       
Sbjct: 45  QDGTFSSV-LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEEL 103

Query: 57  YST---GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
           +      +   I C V   P   +T       +           GF  +       +   
Sbjct: 104 FIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP-VPYDHQRGFSGI------FEDRS 155

Query: 114 YNCVAQNSEGSAESVAM-IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
           Y C     +   +S A  +      +  + V         G ++ + C   G  +    W
Sbjct: 156 YICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEW 215

Query: 173 SKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 224
           +          E       +   H    L + +   +DSG Y C  +  + +   E  + 
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275

Query: 225 VTGAPPIFIQ 234
           +T        
Sbjct: 276 ITVVESGHHH 285

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 93.2 bits (231), Expect = 7e-21
 Identities = 25/193 (12%), Positives = 52/193 (26%), Gaps = 20/193 (10%)

Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD-GFVLVLNGVRESDAGVY 298
             +  ST  +TC         + W         +     +     VL L  +   D G Y
Sbjct: 11  VLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66

Query: 299 NCVAQNSEGSAES-VAMIRINGHRAPRLVVK----PFDMRAPAGSSVEIPCKPDGEPLPR 353
            C   +S G        + I         +        +     + + IPC+    P   
Sbjct: 67  FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLV 125

Query: 354 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN 413
           ++  +      +  +  +      +    G  +   Y C  +    E  ++ Y     + 
Sbjct: 126 VTLHE------KKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQV 179

Query: 414 SVEPAPHTSREPS 426
               + + S    
Sbjct: 180 ---SSINVSVNAV 189

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  152 bits (385), Expect = 9e-41
 Identities = 57/325 (17%), Positives = 93/325 (28%), Gaps = 52/325 (16%)

Query: 145 PFDMRAPA-GSSVEIPCKPDGEPLPRISWSKD-------EAEFVEDRNHKIH-RTGSLRL 195
           P  ++ P     ++            + W          E        ++I      L  
Sbjct: 24  PARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWF 83

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF---IQRPVSTTYSTGSTSRITC- 251
                 D+G Y C   N          L V      F   ++ PV   Y      RITC 
Sbjct: 84  RPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCP 143

Query: 252 ----LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
                      P +TW+     + + ++V    +G  L       S+ G Y CV    E 
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNVI--PEGMNLSFLIALISNNGNYTCVVTYPEN 201

Query: 308 SAE-------SVAMIRINGHRAPRLVVKPFD---MRAPAGSSVEIPCK----PDGEPLPR 353
                     +V ++    +  P ++  P D        G  + IPC        +    
Sbjct: 202 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 261

Query: 354 ISWSKD---------EAEFVEDRNHKIHR----TGSLRLYNIGPQD-SGLYRCTASNLLG 399
           + W+ D         +    E  +H        T  L +  +  +D    Y C A +  G
Sbjct: 262 VWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321

Query: 400 EDVAEGYLTVTGENSVEPAPHTSRE 424
           E      +         PAP  + E
Sbjct: 322 EVAKAAKVKQ-----KVPAPRYTVE 341

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  144 bits (363), Expect = 9e-38
 Identities = 43/300 (14%), Positives = 83/300 (27%), Gaps = 43/300 (14%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-------HDGFVLVLNGVRESDAG 112
               +            + W+      D ++ + +         +  VL       +D G
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92

Query: 113 VYNCVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPC-----KPDGE 165
            Y C+ +N+   ++    + +          +  P            I C          
Sbjct: 93  NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSS 152

Query: 166 PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL----GEDVAEG 221
             P I+W       +++ N+ I    +L        ++G Y C  +              
Sbjct: 153 VKPTITWYMG-CYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211

Query: 222 YLTVTGAP----PIFIQRPVSTTY---STGSTSRITCLV----EGHPLPQMTWFHDGNSL 270
            + V G+P    P  I  P          G    I C V          ++ W  DG   
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271

Query: 271 DSDDHVTYEHDGF------------VLVLNGVRESDAGV-YNCVAQNSEGSAESVAMIRI 317
           D        ++              +L +  V   D    Y C A++++G     A ++ 
Sbjct: 272 DDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  143 bits (361), Expect = 1e-37
 Identities = 46/261 (17%), Positives = 79/261 (30%), Gaps = 39/261 (14%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV----NAPPIFIQRPVSTTYSTGSTSRI 65
           L          G Y+C+  N     +    + V    +     ++ PV   Y      RI
Sbjct: 81  LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140

Query: 66  TC-----LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
           TC            P +TW+     + + ++V    +G  L       S+ G Y CV   
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI--PEGMNLSFLIALISNNGNYTCVVTY 198

Query: 121 SEGSAE-------SVAMIRINGHRAPRLVVKPFD---MRAPAGSSVEIPCK----PDGEP 166
            E           +V ++    +  P ++  P D        G  + IPC        + 
Sbjct: 199 PENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDS 258

Query: 167 LPRISWSKD---------EAEFVEDRNHKIHR----TGSLRLYNIGPQD-SGLYRCTASN 212
              + W+ D         +    E  +H        T  L +  +  +D    Y C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318

Query: 213 LLGEDVAEGYLTVTGAPPIFI 233
             GE      +      P + 
Sbjct: 319 AKGEVAKAAKVKQKVPAPRYT 339

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 78.8 bits (193), Expect = 9e-16
 Identities = 28/159 (17%), Positives = 42/159 (26%), Gaps = 29/159 (18%)

Query: 4   RRSSTELVISGVQREHGGRYSCVA----GNPAGVYRGDLHVTVN-----APPIFIQRPVS 54
                 L        + G Y+CV               L V V      A P  I  P  
Sbjct: 173 IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPND 232

Query: 55  TTY---STGSTSRITCLV----EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-------- 99
                   G    I C V          ++ W  DG   D        ++          
Sbjct: 233 HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDE 292

Query: 100 ----VLVLNGVRESDAGV-YNCVAQNSEGSAESVAMIRI 133
               +L +  V   D    Y C A++++G     A ++ 
Sbjct: 293 TRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  147 bits (373), Expect = 2e-40
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 26/197 (13%)

Query: 55  TTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDA 111
              ST    ++   V       ++ W H+G+++   D V     G    L +N    +D 
Sbjct: 12  KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 71

Query: 112 GVYNCVAQNSEGSAESVAMIRI-------------------NGHRAPRLVVKPFDMRAPA 152
           G Y     + +   +    +                       +RA  L   P  +    
Sbjct: 72  GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLYRC 208
           G ++ + C   G+P P +SW K+E    +  +  +     RT    +  +   DSG Y  
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191

Query: 209 TASNLLGEDVAEGYLTV 225
              N  G + ++  ++V
Sbjct: 192 VVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  147 bits (373), Expect = 2e-40
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 26/197 (13%)

Query: 239 TTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDA 295
              ST    ++   V       ++ W H+G+++   D V     G    L +N    +D 
Sbjct: 12  KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 71

Query: 296 GVYNCVAQNSEGSAESVAMIRI-------------------NGHRAPRLVVKPFDMRAPA 336
           G Y     + +   +    +                       +RA  L   P  +    
Sbjct: 72  GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLYRC 392
           G ++ + C   G+P P +SW K+E    +  +  +     RT    +  +   DSG Y  
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191

Query: 393 TASNLLGEDVAEGYLTV 409
              N  G + ++  ++V
Sbjct: 192 VVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  139 bits (351), Expect = 1e-37
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 27/193 (13%)

Query: 152 AGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYR 207
               +++           +++WS + +        K   TG    L++    P D G Y 
Sbjct: 16  TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75

Query: 208 CTASNLLGEDVAEGYLTV--------------------TGAPPIFIQRPVSTTYSTGSTS 247
               +          L+                          +    P   T   G   
Sbjct: 76  MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQN 304
            +TC V G P P+++W  +  +L   DH   + +        +NGV  +D+G Y  V +N
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195

Query: 305 SEGSAESVAMIRI 317
             GS  S   + +
Sbjct: 196 KYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  110 bits (277), Expect = 1e-27
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 24/148 (16%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV---------------------NAPPIF 48
           L I+       G+Y     +    ++  + ++                      N   + 
Sbjct: 61  LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120

Query: 49  IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNG 105
              P   T   G    +TC V G P P+++W  +  +L   DH   + +        +NG
Sbjct: 121 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTING 180

Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
           V  +D+G Y  V +N  GS  S   + +
Sbjct: 181 VSTADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 68.4 bits (167), Expect = 4e-13
 Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 4/102 (3%)

Query: 336 AGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYR 391
               +++           +++WS + +        K   TG    L++    P D G Y 
Sbjct: 16  TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75

Query: 392 CTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVA 433
               +          L+    +         ++ + ++ + A
Sbjct: 76  MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA 117

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
             +   +    I+GV     G+Y  V  N  G    D  V+V  P
Sbjct: 167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  146 bits (371), Expect = 2e-40
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 16/199 (8%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR--ISWSKDEAEFV---EDRNHKIHR 189
           G+  P    +  ++R   G  + + C P           W  +E       + R      
Sbjct: 5   GYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV---------TGAPPIFIQRPVSTT 240
            G+L + N+   D G Y C  S+                         P   + +     
Sbjct: 65  NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124

Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
              G    + C   G+P+P + W      + S   ++    G VL +  ++  D G+Y C
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS--TSGAVLKIFNIQLEDEGIYEC 182

Query: 301 VAQNSEGSAESVAMIRING 319
            A+N  G  +  A I +  
Sbjct: 183 EAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  145 bits (368), Expect = 6e-40
 Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 13/195 (6%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLD--SDDHVTYEHDGFV 100
            P   +         G    + C    H    ++  W  +   +    D           
Sbjct: 8   DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMI--------RINGHRAPRLVVKPFDMRAPA 152
           L +  V  SD G Y+C   +   +    +          R        +VV+  D+ A  
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
           G +V + C   G P+P I W K                  L+++NI  +D G+Y C A N
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNIQLEDEGIYECEAEN 186

Query: 213 LLGEDVAEGYLTVTG 227
           + G+D  +  + V  
Sbjct: 187 IRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  145 bits (368), Expect = 6e-40
 Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 13/195 (6%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLD--SDDHVTYEHDGFV 284
            P   +         G    + C    H    ++  W  +   +    D           
Sbjct: 8   DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMI--------RINGHRAPRLVVKPFDMRAPA 336
           L +  V  SD G Y+C   +   +    +          R        +VV+  D+ A  
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           G +V + C   G P+P I W K                  L+++NI  +D G+Y C A N
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNIQLEDEGIYECEAEN 186

Query: 397 LLGEDVAEGYLTVTG 411
           + G+D  +  + V  
Sbjct: 187 IRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  118 bits (296), Expect = 2e-30
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 1   TDDRRSSTE----LVISGVQREHGGRYSCVAGNPAG----------VYRGDLHVTVNAPP 46
            D RR  ++    L I+ V+    G YSC   +P+           +       T   P 
Sbjct: 55  MDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPA 114

Query: 47  IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 106
             + +        G    + C   G+P+P + W      + S   ++    G VL +  +
Sbjct: 115 DIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS--TSGAVLKIFNI 172

Query: 107 RESDAGVYNCVAQNSEGSAESVAMIRING 135
           +  D G+Y C A+N  G  +  A I +  
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARIYVQA 201

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  147 bits (371), Expect = 2e-40
 Identities = 33/205 (16%), Positives = 56/205 (27%), Gaps = 21/205 (10%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----------NSLDSDDHVT 93
                            +  +++C   G   P++ W  D           N + +     
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 94  YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
                  +    V   D G Y C+     G++     +++     P          A  G
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122

Query: 154 SSVEIPCK-PDGEPLPRISWSKD----------EAEFVEDRNHKIHRTGSLRLYNIGPQD 202
           +   + C   DG P    +W KD             F          TG L    +   D
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182

Query: 203 SGLYRCTASNLLGEDVAEGYLTVTG 227
           +G Y C A N  G  +    + +  
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  147 bits (371), Expect = 2e-40
 Identities = 33/205 (16%), Positives = 56/205 (27%), Gaps = 21/205 (10%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----------NSLDSDDHVT 277
                            +  +++C   G   P++ W  D           N + +     
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 278 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 337
                  +    V   D G Y C+     G++     +++     P          A  G
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122

Query: 338 SSVEIPCK-PDGEPLPRISWSKD----------EAEFVEDRNHKIHRTGSLRLYNIGPQD 386
           +   + C   DG P    +W KD             F          TG L    +   D
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182

Query: 387 SGLYRCTASNLLGEDVAEGYLTVTG 411
           +G Y C A N  G  +    + +  
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  117 bits (295), Expect = 4e-30
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
             T +    V RE  G Y+C+     G       + + V  PP      + ++ + G+ +
Sbjct: 66  LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRA 125

Query: 64  RITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF---------VLVLNGVRESDAGV 113
            +TC   +G P  + TWF DG  + ++   T                LV + +  SD G 
Sbjct: 126 VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 185

Query: 114 YNCVAQNSEGSAESVAMIRING 135
           Y+C A+N  G+  +   +R+  
Sbjct: 186 YSCEARNGYGTPMTSNAVRMEA 207

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  138 bits (350), Expect = 1e-37
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 30/206 (14%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKD------------EAEFVEDRNH 185
              V  P ++    G +  + C+   +   P + W +D            +    ED   
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE-GYLTVTGAPPIFIQRPVSTTYSTG 244
                  LR+ ++   D+G Y+C         V++ GY+ + G  P F++ P   T +  
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-LPYFLEEPEDRTVAAN 121

Query: 245 STSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
           +   ++C  +G P P  + W  D   L +      +       L+    +    ++C A 
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQR-----SLHVPGLNKTSSFSCEAH 176

Query: 304 NSEGSAESVAMIRINGHRAPRLVVKP 329
           N++G   S             + V P
Sbjct: 177 NAKGVTTSRTA---------TITVLP 193

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  138 bits (350), Expect = 1e-37
 Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYE-------- 95
              F+  P + T + G T  + C ++     P++ W  DG  L+  D    +        
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 96  ---HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 152
                   L +  ++ SD G Y C+      +  S     +     P  + +P D    A
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-QPGYVGLEGLPYFLEEPEDRTVAA 120

Query: 153 GSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
            +   + C+  G P P  + W +D         H         L+  G   +  + C A 
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----GPQRSLHVPGLNKTSSFSCEAH 176

Query: 212 NLLGEDV-AEGYLTVTGAPP 230
           N  G        +TV   P 
Sbjct: 177 NAKGVTTSRTATITV--LPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  137 bits (347), Expect = 3e-37
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 19/195 (9%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYE-------- 279
              F+  P + T + G T  + C ++     P++ W  DG  L+  D    +        
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 280 ---HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 336
                   L +  ++ SD G Y C+      +  S     +     P  + +P D    A
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-QPGYVGLEGLPYFLEEPEDRTVAA 120

Query: 337 GSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
            +   + C+  G P P  + W +D         H         L+  G   +  + C A 
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----GPQRSLHVPGLNKTSSFSCEAH 176

Query: 396 NLLGEDV-AEGYLTV 409
           N  G        +TV
Sbjct: 177 NAKGVTTSRTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  113 bits (285), Expect = 6e-29
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 16/142 (11%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
             ++L I+ +Q    G+Y C+             +V +   P F++ P   T +  +   
Sbjct: 66  VVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFN 125

Query: 65  ITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
           ++C  +G P P  + W  D   L +      +       L+    +    ++C A N++G
Sbjct: 126 LSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQR-----SLHVPGLNKTSSFSCEAHNAKG 180

Query: 124 SAESVAMIRINGHRAPRLVVKP 145
              S             + V P
Sbjct: 181 VTTSRTA---------TITVLP 193

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 70.3 bits (172), Expect = 6e-14
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKD------------EAEFVEDRNH 369
              V  P ++    G +  + C+   +   P + W +D            +    ED   
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE-GYLTVTGENSVEPAPHTSREPS 426
                  LR+ ++   D+G Y+C         V++ GY+ + G       P+   EP 
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG------LPYFLEEPE 114

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  134 bits (339), Expect = 5e-36
 Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 24/208 (11%)

Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG--- 282
           G  P F +  ++         R     E      ++ +  +   +          D    
Sbjct: 1   GIDP-FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG 59

Query: 283 -FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL---------------- 325
              + +  +++ D G Y    Q+ + +  S  ++  +  +  +                 
Sbjct: 60  IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH 119

Query: 326 VVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIG 383
            V+          +V + CK         I W KDE E   D  H       +L +    
Sbjct: 120 FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 179

Query: 384 PQDSGLYRCTASNLLGEDVAEGYLTVTG 411
            +D+G+Y     +  G+D +   L    
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  132 bits (334), Expect = 2e-35
 Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 23/203 (11%)

Query: 48  FIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLV 102
           F +  ++         R     E      ++ +  +   +          D       + 
Sbjct: 5   FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL----------------VVKPF 146
           +  +++ D G Y    Q+ + +  S  ++  +  +  +                  V+  
Sbjct: 65  MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124

Query: 147 DMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSG 204
                   +V + CK         I W KDE E   D  H       +L +     +D+G
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 184

Query: 205 LYRCTASNLLGEDVAEGYLTVTG 227
           +Y     +  G+D +   L    
Sbjct: 185 IYEVILKDDRGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  126 bits (318), Expect = 3e-33
 Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 26/197 (13%)

Query: 142 VVKPFDMRAPAGSSVEIP-CKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLY- 196
                 +       V             ++++  +E E  E   +K+H    TG + ++ 
Sbjct: 6   TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65

Query: 197 -NIGPQDSGLYRCTASNLLGEDVAEGYLTVT------------------GAPPIFIQRPV 237
             +  +D G Y     +    + +   L                        P F++  +
Sbjct: 66  EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YL 124

Query: 238 STTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAG 296
           S   +      + C V        + W+ D   +  D+   ++     L++    + DAG
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 184

Query: 297 VYNCVAQNSEGSAESVA 313
           +Y  + ++  G  +S  
Sbjct: 185 IYEVILKDDRGKDKSRL 201

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  101 bits (254), Expect = 1e-24
 Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 21/149 (14%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---------------- 44
            D      E+ +  +Q E  G Y+    +        + +  +                 
Sbjct: 54  IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWI 113

Query: 45  ---PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
               P F++  +S   +      + C V        + W+ D   +  D+   ++     
Sbjct: 114 RKQGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT 172

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVA 129
           L++    + DAG+Y  + ++  G  +S  
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRL 201

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 65.0 bits (158), Expect = 6e-12
 Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 6/110 (5%)

Query: 326 VVKPFDMRAPAGSSVEIP-CKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLY- 380
                 +       V             ++++  +E E  E   +K+H    TG + ++ 
Sbjct: 6   TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65

Query: 381 -NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASK 429
             +  +D G Y     +    + +   L       ++      R+    K
Sbjct: 66  EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 115

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
           D +     L+I+   ++  G Y  +  +  G  +  L +   A
Sbjct: 165 DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  134 bits (337), Expect = 4e-35
 Identities = 47/287 (16%), Positives = 87/287 (30%), Gaps = 37/287 (12%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
           A P  +  P        +   + C ++G       Q+        L+    VTY +D F 
Sbjct: 4   ATPPQLVSPRVLE--VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--VTYGNDSFS 59

Query: 101 LVLN---GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
              +      +       C       S E++  + I     P   V         G+ V 
Sbjct: 60  AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--PAPNVILTKPEVSEGTEVT 117

Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           + C+    P  +++ +   A+ +  R         L L      +   + C+A+  +   
Sbjct: 118 VKCE--AHPRAKVTLNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQ 168

Query: 218 V----AEGYLTVTGAPPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS 272
           +        L V   P +     P + T+   S     C   G+PLP++    DG     
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228

Query: 273 DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
                            V     G Y C A++++G       + +  
Sbjct: 229 IGE-----------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  132 bits (333), Expect = 1e-34
 Identities = 43/282 (15%), Positives = 73/282 (25%), Gaps = 33/282 (11%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDG---EPLPRISWSKDEAEF--VEDRNHKIHRTG 191
             P+LV           +   + C  DG       ++  +  +          +      
Sbjct: 5   TPPQLVSPRV---LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 61

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
           +        + +    C              +T+   P            S G+   + C
Sbjct: 62  ASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKC 120

Query: 252 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
             E HP  ++T   +G                 L+L    E +   ++C A         
Sbjct: 121 --EAHPRAKVTL--NGVPAQPLGPRAQ------LLLKATPEDNGRSFSCSATLEVAGQLI 170

Query: 312 V--AMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 367
                  +     PRL     P +   P  S     C+  G PLP +   KD    +   
Sbjct: 171 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-- 228

Query: 368 NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
                         +     G Y C A +  GE   E  + V
Sbjct: 229 --------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  129 bits (326), Expect = 1e-33
 Identities = 43/229 (18%), Positives = 66/229 (28%), Gaps = 24/229 (10%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
            +D  S+   V    + E   R +C              VT+ + P           S G
Sbjct: 54  GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEG 113

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
           +   + C  E HP  ++T   +G                 L+L    E +   ++C A  
Sbjct: 114 TEVTVKC--EAHPRAKVTL--NGVPAQPLGPRAQ------LLLKATPEDNGRSFSCSATL 163

Query: 121 SEGSAESV--AMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 176
                         +     PRL     P +   P  S     C+  G PLP +   KD 
Sbjct: 164 EVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG 223

Query: 177 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
              +                 +     G Y C A +  GE   E  + V
Sbjct: 224 TFPLP----------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 90.9 bits (225), Expect = 2e-20
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 17/136 (12%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAG----VYRGDLHVTVNAPPIFIQR--PVSTTYST 59
              +L++     ++G  +SC A                + V   P   +R  P + T+  
Sbjct: 140 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 199

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
            S     C   G+PLP++    DG                      V     G Y C A+
Sbjct: 200 NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-----------SVTVTRDLEGTYLCRAR 248

Query: 120 NSEGSAESVAMIRING 135
           +++G       + +  
Sbjct: 249 STQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 76.6 bits (188), Expect = 2e-15
 Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 21/205 (10%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHDGNSLDSDDHVTYEHDGFV 284
           A P  +  P        +   + C ++G       Q+        L+    VTY +D F 
Sbjct: 4   ATPPQLVSPRVLE--VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--VTYGNDSFS 59

Query: 285 LVLN---GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 341
              +      +       C       S E++  + I     P   V         G+ V 
Sbjct: 60  AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--PAPNVILTKPEVSEGTEVT 117

Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
           + C+    P  +++ +   A+ +  R         L L      +   + C+A+  +   
Sbjct: 118 VKCE--AHPRAKVTLNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQ 168

Query: 402 VAEGYLTVTGENSVEPAPHTSREPS 426
           +     T        P       P 
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPG 193

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
           D            V R+  G Y C A +  G    ++ V V +P
Sbjct: 222 DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  133 bits (335), Expect = 2e-34
 Identities = 44/307 (14%), Positives = 86/307 (28%), Gaps = 54/307 (17%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQM---TWFHDGNSLDSDDHVTYEHDGFV 100
                 +     +  G    +T  V G  PLP     TW  D    +++           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
           L +      +AG Y    Q+++        +  +        + +P      + + VE+ 
Sbjct: 54  LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113

Query: 160 CK--------PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
                     P        SWSK E          I  T  + +       +G+Y     
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDV--------IDTTQDITIQEFTADKNGVYTVKVW 165

Query: 212 NLLGEDVAEGYLTVTGAPPIFIQRPV--STTYSTGSTSRITCLVE--------GHPLP-- 259
               +  A     +     + + + V  S T + G+   +  +V         G P    
Sbjct: 166 GESEDSAASASTKIM-LATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTI 224

Query: 260 QMTWFHDGN-----------SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
           +  W+                 ++ +  +   DG  L        D   + CVA+  +  
Sbjct: 225 KYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG-HLFKESATYDDTAKFWCVAKLYQQI 283

Query: 309 AESVAMI 315
            +    +
Sbjct: 284 EDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  115 bits (288), Expect = 2e-28
 Identities = 49/326 (15%), Positives = 96/326 (29%), Gaps = 65/326 (19%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDG-EPLPR---ISWSKDEAEFVEDRNHKIHRTGSL 193
           A  + ++       AG    +     G EPLP     +W+KD+     +       T +L
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATL 54

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT--GAPPIFIQRPVSTTYSTGSTSRITC 251
            + +   +++G Y+ T  +       E  + +       + I  P     S+ +   +  
Sbjct: 55  TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114

Query: 252 LVE---GHPLPQM-----TWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
            V+   G           +W    + +D+            + +        GVY     
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDTTQ---------DITIQEFTADKNGVYTVKVW 165

Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKP--------DGEPLPR 353
                + + A  +I    A   V +          G+ + +             G P   
Sbjct: 166 GESEDSAASASTKIML--ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLT 223

Query: 354 ISWS---KDEAEFVE----------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
           I ++   + E +                  I   G L   +    D+  + C A      
Sbjct: 224 IKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQI 283

Query: 401 DVAEGYLTVTGENSVEPAPHTSREPS 426
           +          + +VE A  TSR+ S
Sbjct: 284 E----------DETVEVAASTSRKCS 299

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  103 bits (257), Expect = 3e-24
 Identities = 32/218 (14%), Positives = 58/218 (26%), Gaps = 35/218 (16%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQM---TWFHDGNSLDSDDHVTYEHDGFV 284
                 +     +  G    +T  V G  PLP     TW  D    +++           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 343
           L +      +AG Y    Q+++        +  +        + +P      + + VE+ 
Sbjct: 54  LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113

Query: 344 CK--------PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
                     P        SWSK E          I  T  + +       +G+Y     
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDV--------IDTTQDITIQEFTADKNGVYTVKVW 165

Query: 396 NLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVA 433
               +  A     +        A     +      +VA
Sbjct: 166 GESEDSAASASTKIM------LATMNVDQDVVESKTVA 197

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 95.7 bits (237), Expect = 1e-21
 Identities = 29/255 (11%), Positives = 66/255 (25%), Gaps = 45/255 (17%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGD---LHVTVNAPPIFIQRPVSTTYSTGST 62
           ++  L ++    E+ G Y     +   +   +     +      + I  P     S+ + 
Sbjct: 50  NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109

Query: 63  SRITCLVE---GHPLPQM-----TWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 114
             +   V+   G           +W    + +D+            + +        GVY
Sbjct: 110 VELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ---------DITIQEFTADKNGVY 160

Query: 115 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKP--------DG 164
                     + + A  +I    A   V +          G+ + +             G
Sbjct: 161 TVKVWGESEDSAASASTKIML--ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSG 218

Query: 165 EPLPRISWS---KDEAEFVE----------DRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
            P   I ++   + E +                  I   G L   +    D+  + C A 
Sbjct: 219 MPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278

Query: 212 NLLGEDVAEGYLTVT 226
                +     +  +
Sbjct: 279 LYQQIEDETVEVAAS 293

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  132 bits (334), Expect = 6e-34
 Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 17/195 (8%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLN 104
           P    +  + +   G    + C VEG  L Q  W        +            + + N
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 164
              + +     C A+N  G AE    +                  A       IP   DG
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVN------VSFPASVQLHTAVEMHHWCIPFSVDG 272

Query: 165 EPLPRISWSKD----------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 214
           +P P + W  +            EF+E   ++  R G LRL      ++G Y   A+N  
Sbjct: 273 QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332

Query: 215 GEDVAEGYLTVTGAP 229
           G+  A         P
Sbjct: 333 GQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  129 bits (325), Expect = 8e-33
 Identities = 38/192 (19%), Positives = 59/192 (30%), Gaps = 17/192 (8%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLN 288
           P    +  + +   G    + C VEG  L Q  W        +            + + N
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 348
              + +     C A+N  G AE    +                  A       IP   DG
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVN------VSFPASVQLHTAVEMHHWCIPFSVDG 272

Query: 349 EPLPRISWSKD----------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 398
           +P P + W  +            EF+E   ++  R G LRL      ++G Y   A+N  
Sbjct: 273 QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332

Query: 399 GEDVAEGYLTVT 410
           G+  A       
Sbjct: 333 GQASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 96.7 bits (240), Expect = 1e-21
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 13/143 (9%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
           +    S    + +     +    +C A N  G     + V V+ P           +   
Sbjct: 206 SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHW- 264

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV---------LVLNGVRESDA 111
               I   V+G P P + W  +G+ L+    +  E              L LN     + 
Sbjct: 265 ---CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 321

Query: 112 GVYNCVAQNSEGSAESVAMIRIN 134
           G Y  +A N  G A +  M    
Sbjct: 322 GNYTLLAANPFGQASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
           L ++     + G Y+ +A NP G     +       P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  123 bits (309), Expect = 4e-32
 Identities = 37/192 (19%), Positives = 56/192 (29%), Gaps = 30/192 (15%)

Query: 150 APAGSSVEIPCKPD---GEPLPRISWSKD--------------EAEFVEDRN------HK 186
           A  G  V +          P   +SW K               +  F+E         H+
Sbjct: 3   AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62

Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGST 246
              T  L +        G Y C       E   + +L+V   P         + +   S 
Sbjct: 63  SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSV 121

Query: 247 SRITCLVEGHPLPQMTWFHDGNSL----DSDDHVTYEHDG--FVLVLNGVRESDAGVYNC 300
             +TC V   P P + W            ++  V  E DG   V V   + +       C
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181

Query: 301 VAQNSEGSAESV 312
           V +N +  A  V
Sbjct: 182 VGKNDKEEAHGV 193

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  116 bits (292), Expect = 7e-30
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 6/129 (4%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
           ++  LV++     H G Y C             H++V  P         + +   S   +
Sbjct: 65  NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124

Query: 66  TCLVEGHPLPQMTWFHDGNSL----DSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQ 119
           TC V   P P + W            ++  V  E DG   V V   + +       CV +
Sbjct: 125 TCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGK 184

Query: 120 NSEGSAESV 128
           N +  A  V
Sbjct: 185 NDKEEAHGV 193

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  114 bits (287), Expect = 3e-29
 Identities = 39/214 (18%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 211 SNLLGEDV--AEGYLTVTGAPPI----FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 264
           +  LGE V     +  V+  P I    F   P       G       +    P       
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIG-RMHHDVIFIEWPFRGFFDI 60

Query: 265 HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
           H               + F LV+     S  G Y C  +  E        + +   +   
Sbjct: 61  HR------------SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV--VKPLT 106

Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE----AEFVEDRNHKIHRTGSLRL- 379
           L V     + P  S + + C  +  P P + W   E    A    +      + GSL + 
Sbjct: 107 LSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVA 166

Query: 380 --YNIGPQDSGLYRCTASNLLGEDVA---EGYLT 408
              ++         C   N   E       GYL+
Sbjct: 167 VDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYLS 200

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  110 bits (276), Expect = 9e-28
 Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 34/201 (16%)

Query: 56  TYSTGSTSRITCL---VEGHPLPQMTWFHDGNSLDSDDHVTYEHD--------------- 97
           T   G    +T     V   P  +++WF  G   +        HD               
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61

Query: 98  ----GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
                F LV+     S  G Y C  +  E        + +   +   L V     + P  
Sbjct: 62  RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV--VKPLTLSVHSERSQFPDF 119

Query: 154 SSVEIPCKPDGEPLPRISWSKDE----AEFVEDRNHKIHRTGSLRL---YNIGPQDSGLY 206
           S + + C  +  P P + W   E    A    +      + GSL +    ++        
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179

Query: 207 RCTASNLLGEDVA---EGYLT 224
            C   N   E       GYL+
Sbjct: 180 TCVGKNDKEEAHGVYVSGYLS 200

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 25/116 (21%)

Query: 334 APAGSSVEIPCKPD---GEPLPRISWSKD--------------EAEFVEDRN------HK 370
           A  G  V +          P   +SW K               +  F+E         H+
Sbjct: 3   AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62

Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG--ENSVEPAPHTSRE 424
              T  L +        G Y C       E   + +L+V      SV        +
Sbjct: 63  SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD 118

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  122 bits (306), Expect = 1e-31
 Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 33/202 (16%)

Query: 148 MRAPAGSSVEIPCK----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------------ 191
           +    G +  +PCK    P+ +    I W    ++        I  +G            
Sbjct: 10  IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69

Query: 192 ---------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP 236
                          S+ + N+   D G Y+C      G    +  LTV    P   +  
Sbjct: 70  GRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL-VKPSGTRCF 128

Query: 237 VSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 295
           V  +   G+  ++ C   EG    Q  W    +S         E    V+ +       +
Sbjct: 129 VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYS 188

Query: 296 GVYNCVAQNSEGSAESVAMIRI 317
           G Y+C  QN  GS + +  + +
Sbjct: 189 GTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  117 bits (294), Expect = 5e-30
 Identities = 39/223 (17%), Positives = 73/223 (32%), Gaps = 42/223 (18%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ----MTWFHDGNSLDSDDHVTYE 95
           +++  P   I++        G T+ + C     P  Q    + W    +     D V   
Sbjct: 1   LSITTPEQRIEKAK------GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54

Query: 96  HDG--------------------------FVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
           + G                            + +  ++ SD G Y C  + + G A    
Sbjct: 55  YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF 114

Query: 130 MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKD-EAEFVEDRNHKI 187
           ++ +     P       D     G+  ++ C+P +G    +  W K  +++ +       
Sbjct: 115 LLTVLV--KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE 172

Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
             +  + + N   + SG Y CT  N +G D     L V   PP
Sbjct: 173 MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV--PP 213

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  115 bits (289), Expect = 3e-29
 Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 46/228 (20%)

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ----MTWFHDGNSLDSDDHVTY 278
           L++T  P   I++        G T+ + C     P  Q    + W    +     D V  
Sbjct: 1   LSITT-PEQRIEKAK------GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVII 53

Query: 279 EHDG--------------------------FVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
            + G                            + +  ++ SD G Y C  + + G A   
Sbjct: 54  LYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK 113

Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKD-EAEFVEDRNHK 370
            ++ +     P       D     G+  ++ C+P +G    +  W K  +++ +      
Sbjct: 114 FLLTVLV--KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA 171

Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
              +  + + N   + SG Y CT  N +G D     L V     V P+
Sbjct: 172 EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV-----VPPS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  111 bits (278), Expect = 6e-28
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           + ++ +Q    G Y C      GV      +TV   P   +  V  +   G+  ++ C  
Sbjct: 86  INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP 145

Query: 70  -EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 128
            EG    Q  W    +S         E    V+ +       +G Y+C  QN  GS + +
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCM 205

Query: 129 AMIRI 133
             + +
Sbjct: 206 LRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 31/124 (25%)

Query: 332 MRAPAGSSVEIPCK----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------------ 375
           +    G +  +PCK    P+ +    I W    ++        I  +G            
Sbjct: 10  IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69

Query: 376 ---------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
                          S+ + N+   D G Y+C      G    +  LTV  + S      
Sbjct: 70  GRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV 129

Query: 421 TSRE 424
              E
Sbjct: 130 DGSE 133

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
           +S  + +     E+ G YSC   N  G  +  L + V  P
Sbjct: 174 TSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  118 bits (298), Expect = 7e-31
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 36/191 (18%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-------------------VTYEHDGFV 100
           G T  +TC        Q  W +        +                      ++   F 
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
           L++  ++  D+  Y C  ++ +   + +            L     D     G S+ +  
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQLLVF---------GLTANS-DTHLLQGQSLTLTL 119

Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
           +      P +            R   I    +L +  +  QDSG + CT      +   +
Sbjct: 120 ESPPGSSPSVQCRSP-------RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172

Query: 221 GYLTVTGAPPI 231
             + V      
Sbjct: 173 IDIVVLAFQKA 183

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  115 bits (289), Expect = 1e-29
 Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 36/187 (19%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-------------------VTYEHDGFV 284
           G T  +TC        Q  W +        +                      ++   F 
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
           L++  ++  D+  Y C  ++ +   + +            L     D     G S+ +  
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQLLVF---------GLTANS-DTHLLQGQSLTLTL 119

Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
           +      P +            R   I    +L +  +  QDSG + CT      +   +
Sbjct: 120 ESPPGSSPSVQCRSP-------RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172

Query: 405 GYLTVTG 411
             + V  
Sbjct: 173 IDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  110 bits (275), Expect = 9e-28
 Identities = 23/190 (12%), Positives = 45/190 (23%), Gaps = 37/190 (19%)

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--------------------HR 189
              G +VE+ C    +   +  W       +                             
Sbjct: 7   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRI 249
              L + N+  +DS  Y C   +   E V      +T      +          G +  +
Sbjct: 67  NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTHLL--------QGQSLTL 117

Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
           T        P +                       L ++ +   D+G + C    ++   
Sbjct: 118 TLESPPGSSPSVQCRSPRGKNIQGGK--------TLSVSQLELQDSGTWTCTVLQNQKKV 169

Query: 310 ESVAMIRING 319
           E    I +  
Sbjct: 170 EFKIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 87.7 bits (217), Expect = 5e-20
 Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 16/131 (12%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
           + +  L+I  ++ E    Y C   +     +  L   + A          T    G +  
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLT 116

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           +T        P +                       L ++ +   D+G + C    ++  
Sbjct: 117 LTLESPPGSSPSVQCRSPRGKNIQGGK--------TLSVSQLELQDSGTWTCTVLQNQKK 168

Query: 125 AESVAMIRING 135
            E    I +  
Sbjct: 169 VEFKIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 55.4 bits (133), Expect = 7e-09
 Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 21/103 (20%)

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--------------------HR 373
              G +VE+ C    +   +  W       +                             
Sbjct: 7   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66

Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
              L + N+  +DS  Y C   +   E V      +T  +   
Sbjct: 67  NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH 108

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 5/49 (10%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVS 54
               L +S ++ +  G ++C            + + V A         S
Sbjct: 141 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ-----KAS 184

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score =  119 bits (299), Expect = 1e-30
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 21/191 (10%)

Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--------AEFVEDRN-------- 184
           + ++    +    ++V +        L   +W K          A FV + N        
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 185 ---HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTT 240
                I+  GSL    I  +D G+Y    ++       A     V         +  +TT
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121

Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
                +  +TCL        + W  +  SL   + +T   +  +L ++ ++  DAG Y C
Sbjct: 122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180

Query: 301 VAQNSEGSAES 311
              N      S
Sbjct: 181 EISNPVSVRRS 191

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 97.8 bits (243), Expect = 3e-23
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 3/125 (2%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGD--LHVTVNAPPIFIQRPVSTTYSTGST 62
            S+  L+   +  +  G Y+    +                       +  +TT     +
Sbjct: 68  YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS 127

Query: 63  SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
             +TCL        + W  +  SL   + +T   +  +L ++ ++  DAG Y C   N  
Sbjct: 128 VTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPV 186

Query: 123 GSAES 127
               S
Sbjct: 187 SVRRS 191

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 97.4 bits (242), Expect = 4e-23
 Identities = 28/210 (13%), Positives = 58/210 (27%), Gaps = 29/210 (13%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
           VT+ A P  +           +   +        L    W+    +    +   +  +  
Sbjct: 2   VTIEAVPPQVAE--------DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSN 53

Query: 100 V------------------LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 141
           +                  L+   +   D GVY     +         +         + 
Sbjct: 54  MNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQP 113

Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGP 200
            ++  +       SV + C  +      I W  +           + +  S LR+  I  
Sbjct: 114 FLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKR 172

Query: 201 QDSGLYRCTASNLLGEDVAEG-YLTVTGAP 229
           +D+G Y+C  SN +    +    L +   P
Sbjct: 173 EDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 95.5 bits (237), Expect = 2e-22
 Identities = 23/186 (12%), Positives = 51/186 (27%), Gaps = 21/186 (11%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV------------------L 285
            +   +        L    W+    +    +   +  +  +                  L
Sbjct: 14  DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
           +   +   D GVY     +         +         +  ++  +       SV + C 
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133

Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGEDVAE 404
            +      I W  +           + +  S LR+  I  +D+G Y+C  SN +    + 
Sbjct: 134 SNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSN 192

Query: 405 G-YLTV 409
              L +
Sbjct: 193 SIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 20/122 (16%)

Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--------AEFVEDRN-------- 368
           + ++    +    ++V +        L   +W K          A FV + N        
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 369 ---HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGENSVEPAPHTSRE 424
                I+  GSL    I  +D G+Y    ++       A     V    +      T+  
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121

Query: 425 PS 426
             
Sbjct: 122 VK 123

>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C* Length = 466

 Score =  124 bits (313), Expect = 2e-30
 Identities = 49/115 (42%), Positives = 71/115 (61%)

Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLD 574
             + L + FF+ WR+V EGG+DP+LRG + +PAK  R  +    E+ ++LF     + LD
Sbjct: 245 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLD 304

Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           L A+N+QR RDHG+P YNAWR +CGLP+  T   L   + + ++  KL   YG P
Sbjct: 305 LPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTP 359

>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C* Length = 466

 Score = 88.0 bits (217), Expect = 2e-18
 Identities = 32/76 (42%), Positives = 46/76 (60%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G + E     GRVGP + C++  QF+++RDGDRFW+EN   F   Q   + Q S
Sbjct: 361 NIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQIS 420

Query: 852 LARVICDSGDRLTEVR 867
           L R+ICD+    T  +
Sbjct: 421 LPRIICDNTGITTVSK 436

>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C* Length = 466

 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
           NID ++G + E     GRVGP + C++  QF+++RDG
Sbjct: 361 NIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDG 397

>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C* Length = 466

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 914 IDCKKSCAFSPPCFPMEVPHDDP 936
           ++C+ SC   PPCFP+++P +DP
Sbjct: 1   VNCETSCVQQPPCFPLKIPPNDP 23

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  114 bits (286), Expect = 2e-29
 Identities = 39/188 (20%), Positives = 56/188 (29%), Gaps = 24/188 (12%)

Query: 52  PVSTTYST-GSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 108
            V TT    GS   +TC +           W   G  L  D        G         +
Sbjct: 4   TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-----ALPGQKTEFKVDSD 58

Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
              G Y+CV        E +    I  H  PR+           G +  + CK +  P  
Sbjct: 59  DQWGEYSCVFLP-----EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113

Query: 169 -RISWSKDEAEFVEDRNHKI---------HRTGSLRLYNIGPQ-DSGLYRCTASNLLGED 217
              +W K      +   +                L + N+  + D G YRC  ++  G D
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173

Query: 218 VAEGYLTV 225
            A   L V
Sbjct: 174 QAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  114 bits (286), Expect = 2e-29
 Identities = 39/188 (20%), Positives = 56/188 (29%), Gaps = 24/188 (12%)

Query: 236 PVSTTYST-GSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 292
            V TT    GS   +TC +           W   G  L  D        G         +
Sbjct: 4   TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-----ALPGQKTEFKVDSD 58

Query: 293 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
              G Y+CV        E +    I  H  PR+           G +  + CK +  P  
Sbjct: 59  DQWGEYSCVFLP-----EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113

Query: 353 -RISWSKDEAEFVEDRNHKI---------HRTGSLRLYNIGPQ-DSGLYRCTASNLLGED 401
              +W K      +   +                L + N+  + D G YRC  ++  G D
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173

Query: 402 VAEGYLTV 409
            A   L V
Sbjct: 174 QAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  107 bits (268), Expect = 7e-27
 Identities = 35/183 (19%), Positives = 55/183 (30%), Gaps = 20/183 (10%)

Query: 150 APAGSSVEIPCKPDGEPLPRIS--WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 207
              GS + + C  +          W K      ED                     G Y 
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----GQKTEFKVDSDDQWGEYS 65

Query: 208 CTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM-TWFHD 266
           C       E +    + +   PP       S   + G T+ + C  E  P      W+  
Sbjct: 66  CVFLP---EPMGTANIQLH-GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121

Query: 267 GNSLD------SDDHVTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            +S D      S+             L   N   E+D G Y C   +S+GS +++  +R+
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

Query: 318 NGH 320
             H
Sbjct: 182 RSH 184

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  100 bits (250), Expect = 2e-24
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 13/146 (8%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
            +D     +        +  G YSCV         G  ++ ++ PP       S   + G
Sbjct: 42  KEDALPGQKTEFKVDSDDQWGEYSCVFLPEPM---GTANIQLHGPPRVKAVKSSEHINEG 98

Query: 61  STSRITCLVEGHPLPQM-TWFHDGNSLD------SDDHVTYEHDGFVLVL---NGVRESD 110
            T+ + C  E  P      W+   +S D      S+             L   N   E+D
Sbjct: 99  ETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 158

Query: 111 AGVYNCVAQNSEGSAESVAMIRINGH 136
            G Y C   +S+GS +++  +R+  H
Sbjct: 159 PGQYRCNGTSSKGSDQAIITLRVRSH 184

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score =  114 bits (286), Expect = 3e-29
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 31/180 (17%)

Query: 153 GSSVE--IPCKPDGEPLPRISWSK------------DEAEFVEDRNHKIHRTGSLRLYNI 198
           G  +   IP     + +  I W K            ++  F E   +K+ + G+L++ ++
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS--TTYSTGSTSRITCLVEGH 256
              D  +Y+ +  +  G++V E    +       IQ  VS      T   + +TC V   
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLK------IQERVSKPKISWTCINTTLTCEVMNG 127

Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
             P++  + DG  L     V                S +  + C A N      SV  + 
Sbjct: 128 TDPELNLYQDGKHLKLSQRVITHK---------WTTSLSAKFKCTAGNKVSKESSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 90.7 bits (225), Expect = 5e-21
 Identities = 18/177 (10%), Positives = 51/177 (28%), Gaps = 26/177 (14%)

Query: 248 RITCLVEGHPLPQMTWFHDGN------------SLDSDDHVTYEHDGFVLVLNGVRESDA 295
            I        +  + W    +            +    D      +G  L +  ++  D 
Sbjct: 20  DIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-TLKIKHLKTDDQ 78

Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 355
            +Y     +++G      +  +          KP         +  + C+      P ++
Sbjct: 79  DIYKVSIYDTKGKNVLEKIFDLKIQERVS---KPKISWT--CINTTLTCEVMNGTDPELN 133

Query: 356 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
             +D           +  +  +  +      S  ++CTA N + ++ +   ++   +
Sbjct: 134 LYQD--------GKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 89.9 bits (223), Expect = 8e-21
 Identities = 18/176 (10%), Positives = 50/176 (28%), Gaps = 26/176 (14%)

Query: 64  RITCLVEGHPLPQMTWFHDGN------------SLDSDDHVTYEHDGFVLVLNGVRESDA 111
            I        +  + W    +            +    D      +G  L +  ++  D 
Sbjct: 20  DIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-TLKIKHLKTDDQ 78

Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
            +Y     +++G      +  +          KP         +  + C+      P ++
Sbjct: 79  DIYKVSIYDTKGKNVLEKIFDLKIQERVS---KPKISWT--CINTTLTCEVMNGTDPELN 133

Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
             +D           +  +  +  +      S  ++CTA N + ++ +   ++   
Sbjct: 134 LYQD--------GKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPE 181

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 84.5 bits (209), Expect = 5e-19
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 16/125 (12%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVS--TTYSTGSTSRITC 67
           L I  ++ +    Y     +  G    +    +      IQ  VS      T   + +TC
Sbjct: 68  LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK-----IQERVSKPKISWTCINTTLTC 122

Query: 68  LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127
            V     P++  + DG  L     V                S +  + C A N      S
Sbjct: 123 EVMNGTDPELNLYQDGKHLKLSQRVITHK---------WTTSLSAKFKCTAGNKVSKESS 173

Query: 128 VAMIR 132
           V  + 
Sbjct: 174 VEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 14/88 (15%)

Query: 337 GSSVE--IPCKPDGEPLPRISWSK------------DEAEFVEDRNHKIHRTGSLRLYNI 382
           G  +   IP     + +  I W K            ++  F E   +K+ + G+L++ ++
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTVT 410
              D  +Y+ +  +  G++V E    + 
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLK 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score =  110 bits (277), Expect = 6e-29
 Identities = 29/99 (29%), Positives = 43/99 (43%)

Query: 37  DLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 96
            L V     P       + T S G +  ++C   G+P PQ+ WF D  +L  D  +  + 
Sbjct: 2   QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
               L +  VR+ D G+Y C A +  G A+  A   I G
Sbjct: 62  GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score =  105 bits (265), Expect = 2e-27
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 1/99 (1%)

Query: 222 YLTVT-GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
            LTV     P       + T S G +  ++C   G+P PQ+ WF D  +L  D  +  + 
Sbjct: 2   QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
               L +  VR+ D G+Y C A +  G A+  A   I G
Sbjct: 62  GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 190
           + +    AP +     +     G S+E+ C   G P P+I W KD    VED    +   
Sbjct: 3   LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 62

Query: 191 G-SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
             +L +  +  +D GLY C A ++LG    E +  + GA 
Sbjct: 63  NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 95.5 bits (238), Expect = 1e-23
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
           + +    AP +     +     G S+E+ C   G P P+I W KD    VED    +   
Sbjct: 3   LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 62

Query: 375 G-SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
             +L +  +  +D GLY C A ++LG    E +  + G
Sbjct: 63  NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF 48
            +  L I  V++E  G Y+C A +  G  + +    +      
Sbjct: 62  GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104

>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Length = 595

 Score =  119 bits (298), Expect = 5e-28
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 499 SHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNK 558
           S + +  +         +L L   FF+ WR++ +GG+DPL+RG +   +K     + +  
Sbjct: 356 STVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTS 415

Query: 559 ELTDKLFTTFHAVS-LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRR 617
           EL +KLF   H +   DLAA+N+QR RDHG+P YN+WR +CGL +  T + L   + ++ 
Sbjct: 416 ELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKI 475

Query: 618 VRDKLQRLYGHP 629
           +  KL  LY  P
Sbjct: 476 LAKKLMDLYKTP 487

>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Length = 595

 Score = 85.8 bits (211), Expect = 2e-17
 Identities = 34/70 (48%), Positives = 47/70 (67%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
           NID ++G   E  V+ GRVGP + CLL  QF++IRDGDRFW+ENP  F   Q   +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVS 548

Query: 852 LARVICDSGD 861
            +R+ICD+  
Sbjct: 549 FSRLICDNTH 558

>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Length = 595

 Score = 81.9 bits (201), Expect = 4e-16
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 649 SGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVA 708
            GC        C +   ++ YRTI G CNN + P  GA+     R L   YE+G + P  
Sbjct: 4   VGCGAPVPLVKCDE---NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFG 60

Query: 709 PILSSPMAGN 718
                   G 
Sbjct: 61  WTQRKTRNGF 70

>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Length = 595

 Score = 59.6 bits (143), Expect = 3e-09
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 865 EVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLES-WEGIDCKKSCAFS 923
           EV              D   + + MQWGQ +DHDLD A       +      C++ C   
Sbjct: 77  EVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQG 136

Query: 924 PPCFPMEVPHDDP 936
             CFP+  P +DP
Sbjct: 137 DNCFPIMFPKNDP 149

>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Length = 595

 Score = 46.9 bits (110), Expect = 3e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
           NID ++G   E  V+ GRVGP + CLL  QF++IRDG
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDG 525

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  108 bits (271), Expect = 2e-27
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 12  ISGVQREHGGRYSCV----AGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
           +SG +       S +      N             +  P F +  +      GS +R  C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 68  LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNSEGS 124
            VEG+P P++ WF D N +    H   ++D      L ++ V   D   Y C A NS G 
Sbjct: 64  KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

Query: 125 AESVAMIRING 135
           A   A + +  
Sbjct: 124 ATCTAELLVET 134

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  105 bits (264), Expect = 1e-26
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 6/131 (4%)

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT---GAPPIFIQRPVSTTYSTGSTSRITC 251
           +       S       +N +  + A             P F +  +      GS +R  C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 252 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNSEGS 308
            VEG+P P++ WF D N +    H   ++D      L ++ V   D   Y C A NS G 
Sbjct: 64  KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

Query: 309 AESVAMIRING 319
           A   A + +  
Sbjct: 124 ATCTAELLVET 134

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  104 bits (260), Expect = 4e-26
 Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESV--AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
           ++G + S +   + +  N   + ++    +     H  P       DM    GS+    C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGE 400
           K +G P P + W KD+    E R+ +I        SL +  +   D   Y C A N LGE
Sbjct: 64  KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

Query: 401 DVAEGYLTVTGENSVEPAPHTSRE 424
                 L V              E
Sbjct: 124 ATCTAELLVETMGKEGEGEGEGEE 147

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  103 bits (259), Expect = 6e-26
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESV--AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
           ++G + S +   + +  N   + ++    +     H  P       DM    GS+    C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGE 216
           K +G P P + W KD+    E R+ +I        SL +  +   D   Y C A N LGE
Sbjct: 64  KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

Query: 217 DVAEGYLTVTGAP 229
                 L V    
Sbjct: 124 ATCTAELLVETMG 136

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 58.9 bits (142), Expect = 6e-10
 Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 13/107 (12%)

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVED------------RNHKIHRTGSLRLYN 381
              GSSV + C  D      +   +   + VE+                        + +
Sbjct: 14  VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73

Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSAS 428
           +  +DSG YRC        D     + V               P   
Sbjct: 74  VQVRDSGQYRCLVICGAAWDYKYLTVKVKASYM-RIDTRILEVPGTG 119

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score =  106 bits (267), Expect = 8e-27
 Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 25/184 (13%)

Query: 145 PFDMRAPAGSSVE--IPCKPDGEPLPRISWSKDEAE----------FVEDRNHKIHRTGS 192
              +    G  +   IP     + +  + W +              F++    +I   G 
Sbjct: 3   SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
           L++ N+   DSG Y  T  +  G  +    L +     +         Y   S + +TC 
Sbjct: 63  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV----SKPMIYWECSNATLTCE 118

Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
           V      ++  +     L S              ++    +    + C A N       +
Sbjct: 119 VLEGTDVELKLYQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEM 169

Query: 313 AMIR 316
            ++ 
Sbjct: 170 EVVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 72.7 bits (178), Expect = 6e-15
 Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L I  + R+  G Y+    +  G    +  + +    + + +P+   Y   S + +TC V
Sbjct: 63  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM-VSKPM--IYWECSNATLTCEV 119

Query: 70  EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
                 ++  +     L S              ++    +    + C A N       + 
Sbjct: 120 LEGTDVELKLYQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEME 170

Query: 130 MIR 132
           ++ 
Sbjct: 171 VVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 19/174 (10%), Positives = 46/174 (26%), Gaps = 22/174 (12%)

Query: 62  TSRITCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFV-------LVLNGVRESDAG 112
              I        + ++ W      +         +   G         L +  +   D+G
Sbjct: 15  NLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG 74

Query: 113 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
            YN    ++ G+      + +   R   +V KP  M     S+  + C+        +  
Sbjct: 75  TYNVTVYSTNGTRILNKALDL---RILEMVSKP--MIYWECSNATLTCEVLEGTDVELKL 129

Query: 173 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
            +            +       +          ++C A N + ++     +   
Sbjct: 130 YQG--------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 175

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 19/174 (10%), Positives = 46/174 (26%), Gaps = 22/174 (12%)

Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFV-------LVLNGVRESDAG 296
              I        + ++ W      +         +   G         L +  +   D+G
Sbjct: 15  NLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG 74

Query: 297 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
            YN    ++ G+      + +   R   +V KP  M     S+  + C+        +  
Sbjct: 75  TYNVTVYSTNGTRILNKALDL---RILEMVSKP--MIYWECSNATLTCEVLEGTDVELKL 129

Query: 357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            +            +       +          ++C A N + ++     +   
Sbjct: 130 YQG--------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 175

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 67.7 bits (165), Expect = 4e-13
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 13/110 (11%)

Query: 329 PFDMRAPAGSSVE--IPCKPDGEPLPRISWSKDEAE----------FVEDRNHKIHRTGS 376
              +    G  +   IP     + +  + W +              F++    +I   G 
Sbjct: 3   SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
           L++ N+   DSG Y  T  +  G  +    L +     V   P    E S
Sbjct: 63  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV-SKPMIYWECS 111

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  103 bits (260), Expect = 1e-26
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGF 99
           +++ P+ +     TT S+ S ++      G P P   W  DG ++       ++ +  GF
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
            L ++    SD+G+Y C  +NS GS  S   + I  
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  101 bits (253), Expect = 9e-26
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVL 285
           + P+ +     TT S+ S ++      G P P   W  DG ++       ++ +  GF L
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
            ++    SD+G+Y C  +NS GS  S   + I  
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
            P +V    D    + S  +   K  GEP P   W+KD     +   +K+        L 
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
           ++     DSGLY CT  N  G   +   LT+  
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
            P +V    D    + S  +   K  GEP P   W+KD     +   +K+        L 
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
           ++     DSGLY CT  N  G   +   LT+  
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score =  103 bits (259), Expect = 1e-26
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFV 100
            PP FIQ P + +   G   R+   V G P P ++W+ +G ++ SDD    +  E     
Sbjct: 4   GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
           L+   VR SDAG Y CVA+N  G A     + +
Sbjct: 64  LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score =  103 bits (259), Expect = 1e-26
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFV 284
            PP FIQ P + +   G   R+   V G P P ++W+ +G ++ SDD    +  E     
Sbjct: 4   GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
           L+   VR SDAG Y CVA+N  G A     + +
Sbjct: 64  LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 88.2 bits (219), Expect = 3e-21
 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSL 377
            PR +  P +M    G    +  K  G P P +SW  +      D  HK+        SL
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
               +   D+G Y C A N  GE      L V  +
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 87.4 bits (217), Expect = 6e-21
 Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSL 193
            PR +  P +M    G    +  K  G P P +SW  +      D  HK+        SL
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
               +   D+G Y C A N  GE      L V  
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score =  106 bits (265), Expect = 2e-26
 Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 21/191 (10%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV 100
           V   P     P       G    +TC            WFH+G+  +  +          
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-------- 52

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
           L +   +  D+G Y C  Q    S      + +       L+          G  + + C
Sbjct: 53  LNIVNAKFEDSGEYKCQHQQVNESEP----VYLEVFSDWLLLQAS-AEVVMEGQPLFLRC 107

Query: 161 KPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
                  + ++ + KD            +   ++ + N   +DSG Y CT      +  +
Sbjct: 108 HGWRNWDVYKVIYYKDGEAL-----KYWYENHNISITNATVEDSGTYYCTGKVWQLDYES 162

Query: 220 EG-YLTVTGAP 229
           E   +TV  AP
Sbjct: 163 EPLNITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score =  101 bits (254), Expect = 5e-25
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 20/188 (10%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
           P++ + P   R   G +V + C  +         W  + +   E          SL + N
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVN 57

Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-GH 256
              +DSG Y+C    +   +     + +       + +  +     G    + C      
Sbjct: 58  AKFEDSGEYKCQHQQVNESEP----VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNW 113

Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
            + ++ ++ DG +L         ++   + +      D+G Y C  +  +   ES   + 
Sbjct: 114 DVYKVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYES-EPLN 166

Query: 317 INGHRAPR 324
           I   +APR
Sbjct: 167 ITVIKAPR 174

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score =  101 bits (254), Expect = 5e-25
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 21/184 (11%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
           P     P       G    +TC            WFH+G+  +  +          L + 
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS--------LNIV 56

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD- 347
             +  D+G Y C  Q    S      + +       L+          G  + + C    
Sbjct: 57  NAKFEDSGEYKCQHQQVNESEP----VYLEVFSDWLLLQAS-AEVVMEGQPLFLRCHGWR 111

Query: 348 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-Y 406
              + ++ + KD            +   ++ + N   +DSG Y CT      +  +E   
Sbjct: 112 NWDVYKVIYYKDGEAL-----KYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLN 166

Query: 407 LTVT 410
           +TV 
Sbjct: 167 ITVI 170

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 86.9 bits (215), Expect = 8e-20
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
           +++ L I   + E  G Y C            +++ V +  + +Q   +     G    +
Sbjct: 49  TNSSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVFSDWLLLQAS-AEVVMEGQPLFL 105

Query: 66  TCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
            C       + ++ ++ DG +L         ++   + +      D+G Y C  +  +  
Sbjct: 106 RCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLD 159

Query: 125 AESVAMIRINGHRAPR 140
            ES   + I   +APR
Sbjct: 160 YES-EPLNITVIKAPR 174

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  103 bits (258), Expect = 3e-26
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYE 279
           + + T      + +P S T   G ++R +C  +G P+P +TW   G  L +     VT  
Sbjct: 7   HSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 66

Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
                  ++ V+ SD G Y+ V +NSEG  E+   + I
Sbjct: 67  KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  102 bits (256), Expect = 4e-26
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHD 97
                    + +P S T   G ++R +C  +G P+P +TW   G  L +     VT    
Sbjct: 9   SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY 68

Query: 98  GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
                ++ V+ SD G Y+ V +NSEG  E+   + I
Sbjct: 69  KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 96.3 bits (240), Expect = 6e-24
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---S 192
             A R++ KP  M    G S    C  DGEP+P ++W +          H++  T    +
Sbjct: 12  TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
             + ++   D G Y     N  G+  AE  LT+
Sbjct: 72  FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 96.3 bits (240), Expect = 6e-24
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---S 376
             A R++ KP  M    G S    C  DGEP+P ++W +          H++  T    +
Sbjct: 12  TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             + ++   D G Y     N  G+  AE  LT+
Sbjct: 72  FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score =  107 bits (268), Expect = 3e-26
 Identities = 41/233 (17%), Positives = 70/233 (30%), Gaps = 66/233 (28%)

Query: 147 DMRAPAGSSVEIPCK---PDGEPLPRISWSKDEAEFVEDRNHKIHRT------------- 190
           ++   AG +VE+PC     +    P ISW K  +     +  K +               
Sbjct: 11  EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70

Query: 191 -------------------GSLRLYNIGPQDSGLYRCTASNL-----LGEDVAEGYLTVT 226
                               +LRL ++ PQD G Y C  +        G D     L VT
Sbjct: 71  YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT 130

Query: 227 G---APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--- 280
           G   +  + +          G+   +TC         +TW+      ++ +  TY+    
Sbjct: 131 GHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLAN 190

Query: 281 --------------------DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 313
                                   LV+   + +DAG   C     +G  ++  
Sbjct: 191 KNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 94.2 bits (233), Expect = 1e-21
 Identities = 31/251 (12%), Positives = 54/251 (21%), Gaps = 71/251 (28%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTYEH 96
           +TV                 G T  + C          P ++W    +   S       +
Sbjct: 3   MTVRTTH------TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNY 56

Query: 97  -------------------------------DGFVLVLNGVRESDAGVYNCVAQNSE--- 122
                                              L L  V   D G Y C         
Sbjct: 57  NWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 116

Query: 123 --GSAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 178
             G      ++++ GH       V     ++   G+ + + C         ++W      
Sbjct: 117 EFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTF 176

Query: 179 FVEDRNHKIHR------------------------TGSLRLYNIGPQDSGLYRCTASNLL 214
           F                                    +L +      D+G   C  +   
Sbjct: 177 FENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236

Query: 215 GEDVAEGYLTV 225
           GE  A+   T+
Sbjct: 237 GELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 94.2 bits (233), Expect = 1e-21
 Identities = 31/252 (12%), Positives = 54/252 (21%), Gaps = 72/252 (28%)

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTYE 279
           +TV                  G T  + C          P ++W    +   S       
Sbjct: 3   MTVRTTHT-------EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGN 55

Query: 280 H-------------------------------DGFVLVLNGVRESDAGVYNCVAQNSE-- 306
           +                                   L L  V   D G Y C        
Sbjct: 56  YNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIR 115

Query: 307 ---GSAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 361
              G      ++++ GH       V     ++   G+ + + C         ++W     
Sbjct: 116 TEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPT 175

Query: 362 EFVEDRNHKIHR------------------------TGSLRLYNIGPQDSGLYRCTASNL 397
            F                                    +L +      D+G   C  +  
Sbjct: 176 FFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG 235

Query: 398 LGEDVAEGYLTV 409
            GE  A+   T+
Sbjct: 236 QGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 87.7 bits (216), Expect = 2e-19
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 32/152 (21%)

Query: 10  LVISGVQREHGGRYSCVAGNPA-----GVYRGDLHVTVNA----PPIFIQRPVSTTYSTG 60
           L ++ V  + GGRY C     +     G+    + + V        + +          G
Sbjct: 92  LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEG 151

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-----------------------D 97
           +   +TC         +TW+      ++ +  TY+                         
Sbjct: 152 NDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSG 211

Query: 98  GFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
              LV+   + +DAG   C     +G  ++  
Sbjct: 212 ARNLVIRAAKITDAGRVWCELATGQGELDADR 243

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 44.9 bits (105), Expect = 5e-05
 Identities = 9/33 (27%), Positives = 11/33 (33%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
           LVI   +    GR  C      G    D   T+
Sbjct: 215 LVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  101 bits (255), Expect = 6e-26
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
            T++  P    R  S     G  +R    V+  P  ++ W+H+G  L     + Y +   
Sbjct: 3   FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62

Query: 100 V--LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           V  L +      D+G Y  V  N +G A   A + + G
Sbjct: 63  VLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
           G  T+    P    R  S     G  +R    V+  P  ++ W+H+G  L     + Y +
Sbjct: 1   GPFTLD-HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN 59

Query: 281 DGFV--LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
              V  L +      D+G Y  V  N +G A   A + + G
Sbjct: 60  TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 193
            APR+ ++    R P G +         +P   + W  +  E  E        T    +L
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
            + +    DSG YR   +N  GE      L VTG 
Sbjct: 67  EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 91.6 bits (228), Expect = 3e-22
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 377
            APR+ ++    R P G +         +P   + W  +  E  E        T    +L
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
            + +    DSG YR   +N  GE      L VTG
Sbjct: 67  EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  101 bits (254), Expect = 8e-26
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---G 282
           +G  P F+Q P   T   G   R+ C V G P P ++W  DG  +  D            
Sbjct: 6   SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
             L++  V   DAG+Y C+A N  G       + +    + 
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  100 bits (251), Expect = 2e-25
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
           +    P F+Q P   T   G   R+ C V G P P ++W  DG  +  D           
Sbjct: 5   SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64

Query: 98  GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
              L++  V   DAG+Y C+A N  G       + +    + 
Sbjct: 65  VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 89.7 bits (223), Expect = 1e-21
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           GS+ S           P  +  P D+    G    + CK  G P P +SW  D      D
Sbjct: 1   GSSGSSGF-------RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD 53

Query: 183 RNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
             HK+        SL +  +  +D+G+Y C A+N  G++     L V    
Sbjct: 54  SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
           GS+ S           P  +  P D+    G    + CK  G P P +SW  D      D
Sbjct: 1   GSSGSSGF-------RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD 53

Query: 367 RNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
             HK+        SL +  +  +D+G+Y C A+N  G++     L V  + S   +
Sbjct: 54  SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
           L+I  V     G Y+C+A N AG     L + V A  
Sbjct: 68  LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score =  100 bits (251), Expect = 2e-25
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
            +   P F           G    + C V G P+P++TW  +G  +      T E     
Sbjct: 7   GMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-TCEAGVAE 65

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
           L +      D G Y C+A+N+ G     A + ++
Sbjct: 66  LHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 97.0 bits (242), Expect = 3e-24
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 287
             P F           G    + C V G P+P++TW  +G  +      T E     L +
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-TCEAGVAELHI 68

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
                 D G Y C+A+N+ G     A + ++
Sbjct: 69  QDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 92.8 bits (231), Expect = 8e-23
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           GS+ S  M       AP       D     G    + C   G P+PRI+W  +       
Sbjct: 1   GSSGSSGM-----EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA 55

Query: 183 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
           R+        L + +  P+D G Y C A N LG+     ++TV
Sbjct: 56  RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 92.8 bits (231), Expect = 8e-23
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
           GS+ S  M       AP       D     G    + C   G P+PRI+W  +       
Sbjct: 1   GSSGSSGM-----EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA 55

Query: 367 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           R+        L + +  P+D G Y C A N LG+     ++TV
Sbjct: 56  RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score =  102 bits (256), Expect = 5e-25
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 10/176 (5%)

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 209
           A  G SV + C   G   P  SW       +  +      T +L +  +   +   Y CT
Sbjct: 13  AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCT 72

Query: 210 ASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHD 266
           A+    +      + +  + P   +  +S     G    + C V         ++     
Sbjct: 73  ATCESRKLEKGIQVEIY-SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131

Query: 267 G------NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
                    L+  D  + E     +    V E    V  C A+      +SV  +R
Sbjct: 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVR 187

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 88.7 bits (219), Expect = 3e-20
 Identities = 43/187 (22%), Positives = 66/187 (35%), Gaps = 20/187 (10%)

Query: 60  GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
           G +  +TC   G   P  +W    +S   +  VT E     L +N V   +   Y C A 
Sbjct: 16  GDSVSLTCSTTGCESPFFSWRTQIDSP-LNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74

Query: 120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPR--ISWSKDE 176
                 E    I++  +  P+           AG  + + C   D  P  R  I   K +
Sbjct: 75  CESRKLE--KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGD 132

Query: 177 -----AEFVEDRNHKIHRTGSLRL-YNIGPQDSG-LYRCTASNLLGEDVAEG-------Y 222
                 EF+ED + K   T SL + +    +D G +  C A   + E  +          
Sbjct: 133 HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKE 192

Query: 223 LTVTGAP 229
           L V  +P
Sbjct: 193 LQVYISP 199

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 88.7 bits (219), Expect = 4e-20
 Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 13/167 (7%)

Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
           G +  +TC   G   P  +W    +S   +  VT E     L +N V   +   Y C A 
Sbjct: 16  GDSVSLTCSTTGCESPFFSWRTQIDSP-LNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74

Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPR--ISWSKDE 360
                 E    I++  +  P+           AG  + + C   D  P  R  I   K +
Sbjct: 75  CESRKLE--KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGD 132

Query: 361 -----AEFVEDRNHKIHRTGSLRL-YNIGPQDSG-LYRCTASNLLGE 400
                 EF+ED + K   T SL + +    +D G +  C A   + E
Sbjct: 133 HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 80.2 bits (197), Expect = 4e-17
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 9/141 (6%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
             +  +++ L ++ V   +   Y C A   +      + V + + P   +  +S     G
Sbjct: 47  VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAG 106

Query: 61  STSRITCLVEGH---PLPQMTWFHDG------NSLDSDDHVTYEHDGFVLVLNGVRESDA 111
               + C V         ++              L+  D  + E     +    V E   
Sbjct: 107 KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIG 166

Query: 112 GVYNCVAQNSEGSAESVAMIR 132
            V  C A+      +SV  +R
Sbjct: 167 KVLVCRAKLHIDEMDSVPTVR 187

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 62.1 bits (150), Expect = 5e-11
 Identities = 15/86 (17%), Positives = 26/86 (30%)

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 393
           A  G SV + C   G   P  SW       +  +      T +L +  +   +   Y CT
Sbjct: 13  AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCT 72

Query: 394 ASNLLGEDVAEGYLTVTGENSVEPAP 419
           A+    +      + +          
Sbjct: 73  ATCESRKLEKGIQVEIYSFPKDPEIH 98

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 99.5 bits (248), Expect = 6e-25
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTGSLRLY 196
            P +   P +       +  + C   G P+P I W KD      +D   K    G L++ 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST 243
                D+G Y C AS   GE     Y+ V     + +Q P  T  + 
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIEVQE-FGVPVQPPRPTDPNL 113

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 99.5 bits (248), Expect = 7e-25
 Identities = 29/112 (25%), Positives = 48/112 (42%)

Query: 43  NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
           + PP+  Q PV+ T +   T  ++C+  G P+P + W  DG  + + D    + +  VL 
Sbjct: 6   SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ 65

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 154
           +   +  D G Y C+A    G A   A I +     P    +P D      +
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 99.1 bits (247), Expect = 1e-24
 Identities = 29/113 (25%), Positives = 48/113 (42%)

Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
           +  PP+  Q PV+ T +   T  ++C+  G P+P + W  DG  + + D    + +  VL
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL 64

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
            +   +  D G Y C+A    G A   A I +     P    +P D      +
Sbjct: 65  QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 96.4 bits (240), Expect = 9e-24
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTGSLRLY 380
            P +   P +       +  + C   G P+P I W KD      +D   K    G L++ 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67

Query: 381 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSV 432
                D+G Y C AS   GE     Y+       V+      + P  + P++
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIE------VQEFGVPVQPPRPTDPNL 113

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST 59
           L I   +    GRY+C+A  P+G      ++ V    + +Q P  T  + 
Sbjct: 64  LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNL 113

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score =  103 bits (258), Expect = 1e-24
 Identities = 40/268 (14%), Positives = 74/268 (27%), Gaps = 61/268 (22%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTY------ 94
             P             G +  + C+V   E   + ++ W    +  D+ ++V +      
Sbjct: 4   GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63

Query: 95  ----------------EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA 138
                            H+   L+L  V+++D G+Y C  +    S      + +     
Sbjct: 64  VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW---- 119

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR---ISWSKDEAEF---------------- 179
             L  +P D+R   G + ++ C        R   ++W                       
Sbjct: 120 -VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178

Query: 180 -----------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
                      V+         GS++L  +   D G+Y C+      E      L V   
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGH 256
                  P   T   G    +      H
Sbjct: 239 EFQRTISPTPPT-DKGQQGILNGNQHHH 265

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 98.8 bits (245), Expect = 5e-23
 Identities = 38/266 (14%), Positives = 76/266 (28%), Gaps = 65/266 (24%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTY------ 278
             P             G +  + C+V   E   + ++ W    +  D+ ++V +      
Sbjct: 4   GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63

Query: 279 ----------------EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA 322
                            H+   L+L  V+++D G+Y C  +    S      + +     
Sbjct: 64  VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW---- 119

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR---ISWSKDEAEF---------------- 363
             L  +P D+R   G + ++ C        R   ++W                       
Sbjct: 120 -VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178

Query: 364 -----------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
                      V+         GS++L  +   D G+Y C+      E      L V   
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV--- 235

Query: 413 NSVEPAPHTSREPSASKPSVADDTIH 438
             V+     +  P+          ++
Sbjct: 236 --VQDEFQRTISPTPPTDKGQQGILN 259

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 76.8 bits (188), Expect = 1e-15
 Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 32/163 (19%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L++  VQ+   G Y+C              V +   P   + P       G T+++ C +
Sbjct: 86  LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP---EEPRDLRVRVGDTTQMRCSI 142

Query: 70  EGHPLP---QMTWFHDGNSLDSDDHVTYEHDG--------------------------FV 100
           +        ++ W     S   ++ V                                  
Sbjct: 143 QSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS 202

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 143
           + L  V+ESD G+Y C     +  +    ++ +      R + 
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTIS 245

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 10/71 (14%), Positives = 19/71 (26%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGS 61
           D  R+   + +  V+    G Y+C         R  + + V           +     G 
Sbjct: 195 DISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQ 254

Query: 62  TSRITCLVEGH 72
              +      H
Sbjct: 255 QGILNGNQHHH 265

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score =  100 bits (250), Expect = 2e-24
 Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 44  APP--IFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV 100
           APP  +    P         +  +TC     P    + WFH+GN + +    +Y      
Sbjct: 1   APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFK--- 57

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
                   +D+G Y C    +  S      + +       ++  P  +    G ++ + C
Sbjct: 58  -----ANNNDSGEYTCQTGQTSLSDP----VHLTVLFEWLVLQTP-HLEFQEGETIMLRC 107

Query: 161 K-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
                +PL ++++ ++            H   +  +       SG Y CT +       +
Sbjct: 108 HSWKDKPLVKVTFFQNGKSQKFS-----HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSS 162

Query: 220 EG-YLTV 225
           +   +TV
Sbjct: 163 KPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score =  100 bits (250), Expect = 2e-24
 Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 228 APP--IFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV 284
           APP  +    P         +  +TC     P    + WFH+GN + +    +Y      
Sbjct: 1   APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFK--- 57

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
                   +D+G Y C    +  S      + +       ++  P  +    G ++ + C
Sbjct: 58  -----ANNNDSGEYTCQTGQTSLSDP----VHLTVLFEWLVLQTP-HLEFQEGETIMLRC 107

Query: 345 K-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
                +PL ++++ ++            H   +  +       SG Y CT +       +
Sbjct: 108 HSWKDKPLVKVTFFQNGKSQKFS-----HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSS 162

Query: 404 EG-YLTV 409
           +   +TV
Sbjct: 163 KPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 99.5 bits (248), Expect = 3e-24
 Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 21/176 (11%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHR-TGSLRLY 196
             L ++P  +      SV + C+    P    I W  +         + I   T     +
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHN--------GNLIPTHTQPSYRF 56

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-G 255
                DSG Y C        D    +LTV     +   +     +  G T  + C     
Sbjct: 57  KANNNDSGEYTCQTGQTSLSDPV--HLTVLFEWLVL--QTPHLEFQEGETIMLRCHSWKD 112

Query: 256 HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
            PL ++T+F +G S          H      +     S +G Y+C          S
Sbjct: 113 KPLVKVTFFQNGKSQKFS------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSS 162

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 87.6 bits (217), Expect = 3e-20
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 10/125 (8%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
              +             G Y+C  G  +      +H+TV    + +Q P    +  G T 
Sbjct: 47  PTHTQPSYRFKANNNDSGEYTCQTGQTSL--SDPVHLTVLFEWLVLQTP-HLEFQEGETI 103

Query: 64  RITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
            + C      PL ++T+F +G S          H      +     S +G Y+C      
Sbjct: 104 MLRCHSWKDKPLVKVTFFQNGKSQKFS------HLDPTFSIPQANHSHSGDYHCTGNIGY 157

Query: 123 GSAES 127
               S
Sbjct: 158 TLFSS 162

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 1/42 (2%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYR-GDLHVTV 42
                     I      H G Y C       ++    + +TV
Sbjct: 128 KFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score =  108 bits (270), Expect = 2e-24
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLD 574
           +D S  + F     ++ + GV+ L+  F   PA R     N++  +            L 
Sbjct: 369 QDYSY-EQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHI------------LH 415

Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           +A   I+  R   +  +N +R+  G+    +F++L     ++ +  +L+ LYG  
Sbjct: 416 VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQEL---TGEKEMAAELEELYGDI 467

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score =  100 bits (251), Expect = 4e-22
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN---PSTFKP-AQLTQI 847
            ++ + G +LE        G +M  +      +   G+          STF        +
Sbjct: 469 ALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLV 528

Query: 848 KQASLARVICDSGDRLTEV 866
           K A+L +++C +      V
Sbjct: 529 KTATLKKLVCLNTKTCPYV 547

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score = 55.4 bits (133), Expect = 6e-08
 Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
            ++ + G +LE        G +M  +      +   G  +P 
Sbjct: 469 ALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG--NPI 508

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 96.2 bits (240), Expect = 6e-24
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFV 100
           APP F    +  +   G    ++  V+G P P ++W  +   +  D        E     
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           L +      DAG Y C A N  G+ +  A + + G
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 96.2 bits (240), Expect = 6e-24
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFV 284
           APP F    +  +   G    ++  V+G P P ++W  +   +  D        E     
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
           L +      DAG Y C A N  G+ +  A + + G
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 91.2 bits (227), Expect = 3e-22
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 376
             P   V   D     G  V +  +  GEP P +SW ++      D+             
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
           LR+      D+G Y C A N  G    E  L V GE
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 192
             P   V   D     G  V +  +  GEP P +SW ++      D+             
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
           LR+      D+G Y C A N  G    E  L V G
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 96.3 bits (240), Expect = 9e-24
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 32  GVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-D 90
           G +           P+FI +P S     G + ++ C +   P P++ W  +   +  + D
Sbjct: 2   GHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD 61

Query: 91  HVTYEHDG---FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
            ++   D      L++  V + DAG Y   A N  G       + +  
Sbjct: 62  RISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 94.4 bits (235), Expect = 3e-23
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----T 190
            RAP  + KP   +   G SV++ C+    P P++ W ++      + +           
Sbjct: 13  KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72

Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
            +L + ++  +D+G Y  +A N  G       L VT  P  
Sbjct: 73  VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 94.0 bits (234), Expect = 4e-23
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDG---F 283
             P+FI +P S     G + ++ C +   P P++ W  +   +  + D ++   D     
Sbjct: 14  RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73

Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
            L++  V + DAG Y   A N  G       + +  
Sbjct: 74  TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 90.5 bits (225), Expect = 9e-22
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----T 374
            RAP  + KP   +   G SV++ C+    P P++ W ++      + +           
Sbjct: 13  KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72

Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
            +L + ++  +D+G Y  +A N  G       L VT 
Sbjct: 73  VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 20/50 (40%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ 50
             D      L+I  V ++  G Y+  A N AGV   +  + V A P    
Sbjct: 66  YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 27/97 (27%), Positives = 45/97 (46%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           + +  PPI +Q P + T +   T+ + C   G PLP ++W  +G +    D      +  
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62

Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 320
            L +  +R SD G Y CVA +S G     A++ +   
Sbjct: 63  TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRTGSLR 194
              P ++  P +       +  + CK  G+PLP ISW K+   F        I   G+L+
Sbjct: 6   SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
           + N+   D+G Y C A++  GE      L VT +
Sbjct: 66  IKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 27/95 (28%), Positives = 44/95 (46%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 101
            + PPI +Q P + T +   T+ + C   G PLP ++W  +G +    D      +   L
Sbjct: 5   SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTL 64

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 136
            +  +R SD G Y CVA +S G     A++ +   
Sbjct: 65  QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 93.2 bits (232), Expect = 7e-23
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRTGSLR 378
              P ++  P +       +  + CK  G+PLP ISW K+   F        I   G+L+
Sbjct: 6   SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
           + N+   D+G Y C A++  GE      L VT 
Sbjct: 66  IKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 2  DDRRSSTE---LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
          D R +  E   L I  ++    G Y+CVA + +G       + V
Sbjct: 53 DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 43  NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV--TYEHDGFV 100
           ++ P  IQ P       G +  +   V G      TW      +   +H+      +G  
Sbjct: 5   SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
           L +   R+   G Y  + +N  GS ++   + +     P
Sbjct: 65  LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 94.3 bits (235), Expect = 3e-23
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV--TYEHDGFVL 285
           + P  IQ P       G +  +   V G      TW      +   +H+      +G  L
Sbjct: 6   SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
            +   R+   G Y  + +N  GS ++   + +     P
Sbjct: 66  TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 94.3 bits (235), Expect = 4e-23
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
            P+++  P D +  AG SVE+  K  G      +W K   +  E  + K+  +     L 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
           +     +  G Y     N LG   A+  LTV   P
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 91.6 bits (228), Expect = 3e-22
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
            P+++  P D +  AG SVE+  K  G      +W K   +  E  + K+  +     L 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
           +     +  G Y     N LG   A+  LTV  
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 7   STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
            ++L I   ++EH G Y+ +  N  G  +  +++TV   P
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 94.3 bits (235), Expect = 3e-23
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEH 280
           + +   P F  +        G     TC V G+P P++ WF DG  +        +  + 
Sbjct: 3   SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62

Query: 281 DGFV-LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
           DG   L        D G Y  +A N +G       + +    + 
Sbjct: 63  DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 93.2 bits (232), Expect = 9e-23
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 43  NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGF 99
           +  P F  +        G     TC V G+P P++ WF DG  +        +  + DG 
Sbjct: 6   SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65

Query: 100 V-LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
             L        D G Y  +A N +G       + +    + 
Sbjct: 66  CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----TG 191
            AP   +K    +   G  V   C+  G P P+I W KD  +     +H   +     T 
Sbjct: 7   GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
           SL        D G Y   A+N  G     G L V     
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 85.1 bits (211), Expect = 5e-20
 Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----TG 375
            AP   +K    +   G  V   C+  G P P+I W KD  +     +H   +     T 
Sbjct: 7   GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
           SL        D G Y   A+N  G     G L V   NS
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 97.6 bits (242), Expect = 4e-23
 Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 19/192 (9%)

Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSK---DEAEFVEDRNHKIHRTGSLRLYNIGPQDS 203
            +      +V IPC         +S      ++    +             + +     +
Sbjct: 18  YITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYA 76

Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPPIF---IQRPVSTTYSTGSTSRITCLVEGHPLP- 259
           G+  C A        +  Y+ V     I+   +        S G    + C         
Sbjct: 77  GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG 136

Query: 260 -QMTWFHDGNSLDSDDHVTYEHDGF----------VLVLNGVRESDAGVYNCVAQNSEGS 308
               W +  +       V  +               L ++GV  SD G+Y C A +   +
Sbjct: 137 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 196

Query: 309 AESVAMIRINGH 320
            ++   +R++  
Sbjct: 197 KKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 93.3 bits (231), Expect = 1e-21
 Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 21/209 (10%)

Query: 39  HVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW---FHDGNSLDSDDHVTYE 95
              + +        V  T +   T  I CL        ++    + +   +   + ++++
Sbjct: 4   SPFIASVSDQHG-VVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWD 61

Query: 96  HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV--KPFDMRAPAG 153
                  +     S AG+  C A+ ++ S +S+  I +        VV      +    G
Sbjct: 62  SKK-GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 120

Query: 154 SSVEIPCKPDGEPLPR--ISWSKDEAEFVEDR-----------NHKIHRTGSLRLYNIGP 200
             + + C    E       +W    ++    +           +       +L +  +  
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180

Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
            D GLY C AS+ L       ++ V   P
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVHEDP 209

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 90.2 bits (223), Expect = 1e-20
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 20/199 (10%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW---FHDGNSLDSDDHVTYEHDGFVL 285
                   V  T +   T  I CL        ++    + +   +   + ++++      
Sbjct: 9   SVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKK-GF 66

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV--KPFDMRAPAGSSVEIP 343
            +     S AG+  C A+ ++ S +S+  I +        VV      +    G  + + 
Sbjct: 67  TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126

Query: 344 CKPDGEPLPR--ISWSKDEAEFVEDR-----------NHKIHRTGSLRLYNIGPQDSGLY 390
           C    E       +W    ++    +           +       +L +  +   D GLY
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186

Query: 391 RCTASNLLGEDVAEGYLTV 409
            C AS+ L       ++ V
Sbjct: 187 TCAASSGLMTKKNSTFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 82.1 bits (202), Expect = 9e-18
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 16/147 (10%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA----PPIFIQRPVSTTYSTGS 61
           S     I      + G   C A      Y+  +++ V        + +        S G 
Sbjct: 62  SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121

Query: 62  TSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGF----------VLVLNGVRES 109
              + C             W +  +       V  +               L ++GV  S
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181

Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGH 136
           D G+Y C A +   + ++   +R++  
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPI 47
           ++ ++  + L I GV R   G Y+C A +     +    V V+  PI
Sbjct: 164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI 210

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 44.4 bits (104), Expect = 5e-05
 Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 4/90 (4%)

Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSK---DEAEFVEDRNHKIHRTGSLRLYNIGPQDS 387
            +      +V IPC         +S      ++    +             + +     +
Sbjct: 18  YITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYA 76

Query: 388 GLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
           G+  C A        +  Y+ V     +  
Sbjct: 77  GMVFCEAKINDESYQSIMYIVVVVGYRIYD 106

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVL 101
            P   +R  S T   GS +     V G P P+  W+ +G  ++  D + +         L
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           V+  V   D+      A N  G   S A + +  
Sbjct: 65  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVL 285
            P   +R  S T   GS +     V G P P+  W+ +G  ++  D + +         L
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
           V+  V   D+      A N  G   S A + +  
Sbjct: 65  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 88.5 bits (220), Expect = 3e-21
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 376
            AP++  +        GS      +  G+P P   W K+  +         +        
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
           L + ++  +DS      A N+ GE  +  +L V  +
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 87.3 bits (217), Expect = 8e-21
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 192
            AP++  +        GS      +  G+P P   W K+  +         +        
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
           L + ++  +DS      A N+ GE  +  +L V  
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 94.2 bits (234), Expect = 2e-22
 Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 21/185 (11%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT-WFHDGNSLDSDDHVTYEHDGFVLVL 287
             +    P   +     +  + C     P    T WFH+ + + S              +
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS--------YFI 58

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 347
           +    +D+G Y C    S  S      +++  H    L+  P  +       + + C   
Sbjct: 59  DAATVNDSGEYRCQTNLSTLSDP----VQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSW 113

Query: 348 -GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEG 405
               L ++++ ++  +         H      +     +DSG Y C              
Sbjct: 114 KNTALHKVTYLQNGKDRKYF-----HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 168

Query: 406 YLTVT 410
            +T+T
Sbjct: 169 NITIT 173

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 92.2 bits (229), Expect = 1e-21
 Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 19/175 (10%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
             + ++P         SV + C+    P      W  +E+              S  +  
Sbjct: 8   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------ASSYFIDA 60

Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV-EGH 256
               DSG YRC  +     D     L V     +   +     +       + C   +  
Sbjct: 61  ATVNDSGEYRCQTNLSTLSDPV--QLEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNT 116

Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
            L ++T+  +G          Y H      +      D+G Y C       +  S
Sbjct: 117 ALHKVTYLQNGKDR------KYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS 165

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 85.7 bits (212), Expect = 2e-19
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 10/125 (8%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
              ++   I        G Y C            + + V+   + +Q P    +      
Sbjct: 50  SSQASSYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAP-RWVFKEEDPI 106

Query: 64  RITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
            + C   +   L ++T+  +G          Y H      +      D+G Y C      
Sbjct: 107 HLRCHSWKNTALHKVTYLQNGKDR------KYFHHNSDFHIPKATLKDSGSYFCRGLVGS 160

Query: 123 GSAES 127
            +  S
Sbjct: 161 KNVSS 165

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score =  100 bits (251), Expect = 4e-22
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN---PSTF-KPAQLTQI 847
            ++ +   ++E        G TM  L      +   G+         PSTF        I
Sbjct: 469 VMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKII 528

Query: 848 KQASLARVICDSGDRLTEV-RVCFSPRPTTSITPDP 882
             AS+  +IC++             P+PT + T + 
Sbjct: 529 NTASIQSLICNNVKGCPFTSFNVQDPQPTKTATINA 564

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score = 99.4 bits (247), Expect = 1e-21
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 16/117 (13%)

Query: 513 LSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVS 572
             ++ S  +  +    ++ E G+   +  F    A R     N                 
Sbjct: 367 EDQEYSFKQFLY-NNSILLEHGLTQFVESFTRQIAGRVAGGRN------------VPIAV 413

Query: 573 LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
             +A  +I + R+      N +R+   L    +FE+L     ++ +  +L+ LY   
Sbjct: 414 QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL---TGEKEMAAELKALYSDI 467

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score = 54.7 bits (131), Expect = 9e-08
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
            ++ +   ++E        G TM  L      +   G  +P 
Sbjct: 469 VMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMG--NPI 508

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 94.6 bits (235), Expect = 4e-22
 Identities = 31/202 (15%), Positives = 61/202 (30%), Gaps = 24/202 (11%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT-WFHDGNSLDSDDHVTYEHDGFVLVLN 104
            +    P         +  + C     P  Q T WFH+ + + S              ++
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS--------YFID 59

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD- 163
                D+G Y C  Q S  S      +++  H    L+  P  +       + + C    
Sbjct: 60  AATVDDSGEYRCQTQLSTLSDP----VQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWK 114

Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGY 222
              L ++++ ++            H      +     +DSG Y C               
Sbjct: 115 NTALHKVTYLQNGKGR-----KYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169

Query: 223 LTVTGAPPIFIQRPVSTTYSTG 244
           +T+T    +     +S+ +  G
Sbjct: 170 ITITQGLAV---STISSFFPPG 188

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 21/185 (11%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT-WFHDGNSLDSDDHVTYEHDGFVLVLN 288
            +    P         +  + C     P  Q T WFH+ + + S              ++
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS--------YFID 59

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD- 347
                D+G Y C  Q S  S      +++  H    L+  P  +       + + C    
Sbjct: 60  AATVDDSGEYRCQTQLSTLSDP----VQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWK 114

Query: 348 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGY 406
              L ++++ ++            H      +     +DSG Y C               
Sbjct: 115 NTALHKVTYLQNGKGR-----KYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169

Query: 407 LTVTG 411
           +T+T 
Sbjct: 170 ITITQ 174

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 79.5 bits (196), Expect = 6e-17
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 10/125 (8%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
              ++   I     +  G Y C            + + V+   + +Q P    +      
Sbjct: 50  SSQASSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAP-RWVFKEEDPI 106

Query: 64  RITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
            + C       L ++T+  +G          Y H      +      D+G Y C      
Sbjct: 107 HLRCHSWKNTALHKVTYLQNGKGR------KYFHHNSDFYIPKATLKDSGSYFCRGLVGS 160

Query: 123 GSAES 127
            +  S
Sbjct: 161 KNVSS 165

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVNAPP 46
              +++  I     +  G Y C     +     + + +T+    
Sbjct: 133 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 94.7 bits (235), Expect = 4e-22
 Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 37/212 (17%)

Query: 150 APAGSSVEIPCKPDGEPLP-----RISWSKDEAEFVEDRNHK------------------ 186
              GS++ I CK   E         + W  ++   ++  + +                  
Sbjct: 13  VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72

Query: 187 ---IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST 243
                   +L++ ++  QD+G+YRC  S   G D     + V  AP   I + +      
Sbjct: 73  DQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVN-APYNKINQRILVVDPV 130

Query: 244 GSTSRITCLVEGHPLPQMTWF-HDGNSLDSDDHVTYEHDGFVL-----VLNGVRESDAGV 297
            S   +TC  EG+P  ++ W   D   L      T       L      L  +  +   +
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR-INTTTNEI 189

Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 329
           + C  +  +      A + I     P      
Sbjct: 190 FYCTFRRLDPEENHTAELVI--PELPLAHPPN 219

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 93.9 bits (233), Expect = 9e-22
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 76  QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           Q + +     L  D           L +  V+  DAGVY C+     G+      +++  
Sbjct: 60  QHSSYRQRARLLKDQL---SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKV-- 113

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
           +     + +   +  P  S  E+ C+ +G P   + W+  + + +  +    +     +L
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173

Query: 196 YNIG------PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTT 240
           +N+          + ++ CT   L  E+     L +   P      P   T
Sbjct: 174 FNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHP--PNERT 222

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 93.1 bits (231), Expect = 2e-21
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 12/166 (7%)

Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
           Q + +     L  D           L +  V+  DAGVY C+     G+      +++  
Sbjct: 60  QHSSYRQRARLLKDQL---SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKV-- 113

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
           +     + +   +  P  S  E+ C+ +G P   + W+  + + +  +    +     +L
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173

Query: 380 YNIG------PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
           +N+          + ++ CT   L  E+     L +       P  
Sbjct: 174 FNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN 219

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 85.4 bits (211), Expect = 9e-19
 Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 10/142 (7%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L I+ V+ +  G Y C+     G     + V VNAP   I + +       S   +TC  
Sbjct: 82  LQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140

Query: 70  EGHPLPQMTWF-HDGNSLDSDDHVTYEHDGFVL-----VLNGVRESDAGVYNCVAQNSEG 123
           EG+P  ++ W   D   L      T       L      L  +  +   ++ C  +  + 
Sbjct: 141 EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR-INTTTNEIFYCTFRRLDP 199

Query: 124 SAESVAMIRINGHRAPRLVVKP 145
                A + I     P      
Sbjct: 200 EENHTAELVI--PELPLAHPPN 219

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 27/121 (22%)

Query: 334 APAGSSVEIPCKPDGEPLP-----RISWSKDEAEFVEDRNHK------------------ 370
              GS++ I CK   E         + W  ++   ++  + +                  
Sbjct: 13  VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72

Query: 371 ---IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSA 427
                   +L++ ++  QD+G+YRC  S   G D     + V    +         +P  
Sbjct: 73  DQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVT 131

Query: 428 S 428
           S
Sbjct: 132 S 132

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 94.2 bits (233), Expect = 5e-22
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 37/190 (19%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
             SV + C         I+W KD          K        L +      G+Y+C  S 
Sbjct: 18  DGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGSQ 70

Query: 213 LLGEDVAEGYLTVTG--------------------------APPIFIQRPVSTTYSTGST 246
              + +   Y   +                                I +       +G+T
Sbjct: 71  NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTT 130

Query: 247 SRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRE-SDAGVYNCVAQN 304
             +TC    +P  ++ W H+  ++  D D      D   L L    E   +G Y C  + 
Sbjct: 131 VILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG 188

Query: 305 SEGSAESVAM 314
           S+    +  +
Sbjct: 189 SKPEDANFYL 198

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 83.8 bits (206), Expect = 2e-18
 Identities = 35/189 (18%), Positives = 53/189 (28%), Gaps = 39/189 (20%)

Query: 66  TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
           TC         +TWF DG  +          D     L    +   G+Y C    ++   
Sbjct: 24  TC---DAEAKNITWFKDGKMIGFLTE-----DKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75

Query: 126 ESVAMIRINGHRAPRLVVKPFDMRAP-------------------------AGSSVEIPC 160
             V     +   A +   K  D +                           +G++V + C
Sbjct: 76  LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTC 135

Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGSLRLYNIGP-QDSGLYRCTASNLLGED 217
                P   I W  ++     D + K        L L      + SG Y C       ED
Sbjct: 136 PQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 193

Query: 218 VAEGYLTVT 226
            A  YL + 
Sbjct: 194 -ANFYLYLR 201

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 83.8 bits (206), Expect = 2e-18
 Identities = 35/189 (18%), Positives = 53/189 (28%), Gaps = 39/189 (20%)

Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
           TC         +TWF DG  +          D     L    +   G+Y C    ++   
Sbjct: 24  TC---DAEAKNITWFKDGKMIGFLTE-----DKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75

Query: 310 ESVAMIRINGHRAPRLVVKPFDMRAP-------------------------AGSSVEIPC 344
             V     +   A +   K  D +                           +G++V + C
Sbjct: 76  LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTC 135

Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGSLRLYNIGP-QDSGLYRCTASNLLGED 401
                P   I W  ++     D + K        L L      + SG Y C       ED
Sbjct: 136 PQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 193

Query: 402 VAEGYLTVT 410
            A  YL + 
Sbjct: 194 -ANFYLYLR 201

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 73.4 bits (179), Expect = 7e-15
 Identities = 22/159 (13%), Positives = 41/159 (25%), Gaps = 31/159 (19%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVY-------------------------- 34
                   +  +    ++  G Y C                                   
Sbjct: 42  GFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKD 101

Query: 35  -RGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHV 92
                    N     I +       +G+T  +TC    +P  ++ W H+  ++  D D  
Sbjct: 102 DAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDK 159

Query: 93  TYEHDGFVLVLNGVRE-SDAGVYNCVAQNSEGSAESVAM 130
               D   L L    E   +G Y C  + S+    +  +
Sbjct: 160 NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 198

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 61.8 bits (149), Expect = 7e-11
 Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 7/119 (5%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
             SV + C         I+W KD          K        L +      G+Y+C  S 
Sbjct: 18  DGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGSQ 70

Query: 397 LLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNAT 455
              + +   Y   + +++ + A                D       +       +++ T
Sbjct: 71  NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 36  GDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE 95
           G    +       +  P     + G T  +TC V   P PQ+ W  DG  L         
Sbjct: 1   GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------ 54

Query: 96  HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
               VL+L  +   D G Y+CVA +S    +    + I+
Sbjct: 55  -PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 87.9 bits (218), Expect = 4e-21
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           +        +  P     + G T  +TC V   P PQ+ W  DG  L             
Sbjct: 5   SSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-------PSP 57

Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           VL+L  +   D G Y+CVA +S    +    + I+
Sbjct: 58  VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           GS+ S  +         +LVV+P       G +V + C+   +P P+I W KD       
Sbjct: 1   GSSGSSGL------EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD------G 48

Query: 183 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
               +  +  L L  IGPQD G Y C A++          ++++   P
Sbjct: 49  VPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 84.0 bits (208), Expect = 9e-20
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
           GS+ S  +         +LVV+P       G +V + C+   +P P+I W KD       
Sbjct: 1   GSSGSSGL------EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD------G 48

Query: 367 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
               +  +  L L  IGPQD G Y C A++          ++++
Sbjct: 49  VPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 6  SSTELVISGVQREHGGRYSCVAGNPAGVYR--GDLHVTVNAP 45
           S  L++  +  +  G YSCVA + +   +    + +++  P
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
            P+++     ++  AG +  +     G P P  +W+  ++         +       S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
             +    DSG Y+    N LGED A   + V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
            P+++     ++  AG +  +     G P P  +W+  ++         +       S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             +    DSG Y+    N LGED A   + V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 88.1 bits (219), Expect = 3e-21
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLV 102
            P  +          G T  +     G P P  TW    +       +  +       + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
               + +D+G Y    +N  G  E++  + +
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 88.1 bits (219), Expect = 3e-21
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLV 286
            P  +          G T  +     G P P  TW    +       +  +       + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
               + +D+G Y    +N  G  E++  + +
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 8/36 (22%), Positives = 11/36 (30%)

Query: 7  STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
          +T +     +R   G Y     N  G       V V
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
           +    V+        G  +++ C+   +    I+W +D  +  E    +I     + + +
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQD 60

Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
             P DSGLY C  S+  G D     + V+ A P
Sbjct: 61  SVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 87.1 bits (216), Expect = 7e-21
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
           +    V+        G  +++ C+   +    I+W +D  +  E    +I     + + +
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQD 60

Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
             P DSGLY C  S+  G D     + V+      P+
Sbjct: 61  SVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
           G+         S     G   ++ C +       + W  DG  L   +      +   + 
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE--EVE 57

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
           +     +D+G+Y CV  +  GS  +   + +
Sbjct: 58  VQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
           +         S     G   ++ C +       + W  DG  L   +      +   + +
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE--EVEV 58

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
                +D+G+Y CV  +  GS  +   + +
Sbjct: 59  QDSVPADSGLYACVTSSPSGSDTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 6  SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
          +  E+ +        G Y+CV  +P+G       V V+   
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 93.0 bits (231), Expect = 1e-21
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 21  GRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 80
             Y+  +             +    P   Q PV+     G+   ITC V  +P   ++WF
Sbjct: 1   ATYAAASSALVP------RGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWF 53

Query: 81  HDGNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 136
            DG  L S ++   +         L +    E+D G YNC A N  G      ++     
Sbjct: 54  RDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113

Query: 137 RAPRLVVK 144
            +   + +
Sbjct: 114 PSSPSIDQ 121

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 91.4 bits (227), Expect = 6e-21
 Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
             Y   +         +         AP+ +  P  +    G+ V I C+    P   IS
Sbjct: 1   ATYAAASSALVPRGSHMY--------APK-LQGPVAVYTWEGNQVNITCEVFAYPSATIS 51

Query: 172 WSKDEAEFVEDRNHKIHRTGS-----LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
           W +D           I    +     L +      D G Y CTA N +G++  E  L   
Sbjct: 52  WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111

Query: 227 ---GAPPIFIQRPVSTT 240
               +P I    P S+T
Sbjct: 112 DTPSSPSIDQVEPYSST 128

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 12/129 (9%)

Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW 263
             Y   +S L+               P   Q PV+     G+   ITC V  +P   ++W
Sbjct: 1   ATYAAASSALVPRGSHM-------YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISW 52

Query: 264 FHDGNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
           F DG  L S ++   +         L +    E+D G YNC A N  G      ++    
Sbjct: 53  FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112

Query: 320 HRAPRLVVK 328
             +   + +
Sbjct: 113 TPSSPSIDQ 121

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 88.0 bits (218), Expect = 8e-20
 Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 23/148 (15%)

Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 355
             Y   +         +         AP+ +  P  +    G+ V I C+    P   IS
Sbjct: 1   ATYAAASSALVPRGSHMY--------APK-LQGPVAVYTWEGNQVNITCEVFAYPSATIS 51

Query: 356 WSKDEAEFVEDRNHKIHRTGS-----LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           W +D           I    +     L +      D G Y CTA N +G++  E  L   
Sbjct: 52  WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111

Query: 411 GENSVEPAPHTSREPSASKPSVADDTIH 438
                 P+      PS  +      T  
Sbjct: 112 D----TPSS-----PSIDQVEPYSSTAQ 130

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 11/57 (19%), Positives = 20/57 (35%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
           S++ L ++       G Y+C A N  G    +  +     P          YS+ + 
Sbjct: 74  SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQ 130

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 90.5 bits (224), Expect = 2e-21
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 34  YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD------ 87
           +   L    +    F+Q P+S     G +  + C   G P+P++ W+ +G   +      
Sbjct: 10  HSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69

Query: 88  ---------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA 138
                          ++H    + ++ + E D G Y C A N           R+   RA
Sbjct: 70  WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRA 129

Query: 139 PRLVV 143
             +V+
Sbjct: 130 QAVVL 134

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 87.8 bits (217), Expect = 1e-20
 Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 23/135 (17%)

Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
           G  +    +S G     +            V  P   +   G SVE+ C+  G P+P I 
Sbjct: 2   GSSHHHHHHSSGLVPRGS-------HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQ 54

Query: 172 WSKDEAEFVEDRNH----------------KIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
           W  +     +  +                   H   ++ +  +  +D+G Y C ASN   
Sbjct: 55  WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114

Query: 216 EDVAEGYLTVTGAPP 230
            +       V     
Sbjct: 115 RNHLTRAPRVKWVRA 129

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 87.8 bits (217), Expect = 2e-20
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--------------- 271
                F+Q P+S     G +  + C   G P+P++ W+ +G   +               
Sbjct: 19  SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78

Query: 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 327
                 ++H    + ++ + E D G Y C A N           R+   RA  +V+
Sbjct: 79  HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 85.1 bits (210), Expect = 1e-19
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 23/132 (17%)

Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 355
           G  +    +S G     +            V  P   +   G SVE+ C+  G P+P I 
Sbjct: 2   GSSHHHHHHSSGLVPRGS-------HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQ 54

Query: 356 WSKDEAEFVEDRNH----------------KIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
           W  +     +  +                   H   ++ +  +  +D+G Y C ASN   
Sbjct: 55  WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114

Query: 400 EDVAEGYLTVTG 411
            +       V  
Sbjct: 115 RNHLTRAPRVKW 126

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 90.8 bits (225), Expect = 3e-21
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 31/176 (17%)

Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVE-------------DRNHKIHRTGSLRLYNIG 199
             +V     P   PL  + W K + +  E             +R +    +GSL +YN+ 
Sbjct: 10  YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
             D   Y   + N+      + +L V         +P+       S + +TC V      
Sbjct: 69  SSDEDEYEMESPNITDT--MKFFLYVLEMVS----KPMIYW--ECSNATLTCEVLEGTDV 120

Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315
           ++  +     L S              ++    +    + C A N       + ++
Sbjct: 121 ELKLYQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 16/122 (13%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L I  +       Y   + N     +    + V              Y   S + +TC V
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITDTMK--FFLYVLEMV-----SKPMIYWECSNATLTCEV 114

Query: 70  EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
                 ++  +     L S              ++    +    + C A N       + 
Sbjct: 115 LEGTDVELKLYQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEME 165

Query: 130 MI 131
           ++
Sbjct: 166 VV 167

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 19/103 (18%)

Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVE-------------DRNHKIHRTGSLRLYNIG 383
             +V     P   PL  + W K + +  E             +R +    +GSL +YN+ 
Sbjct: 10  YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 384 PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
             D   Y   + N+      + +L V     +   P    E S
Sbjct: 69  SSDEDEYEMESPNITDT--MKFFLYV---LEMVSKPMIYWECS 106

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 14/170 (8%), Positives = 44/170 (25%), Gaps = 31/170 (18%)

Query: 70  EGHPLPQMTWFHDGNSL------------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
              PL ++ W    + +               + V  +     L +  +  SD   Y   
Sbjct: 19  SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78

Query: 118 AQNSEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 176
           + N   + +  + ++        + ++          S+  + C+        +   +  
Sbjct: 79  SPNITDTMKFFLYVLE----MVSKPMIY------WECSNATLTCEVLEGTDVELKLYQG- 127

Query: 177 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
                     +       +          ++C A N + ++     +   
Sbjct: 128 -------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 170

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 14/170 (8%), Positives = 44/170 (25%), Gaps = 31/170 (18%)

Query: 254 EGHPLPQMTWFHDGNSL------------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
              PL ++ W    + +               + V  +     L +  +  SD   Y   
Sbjct: 19  SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78

Query: 302 AQNSEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 360
           + N   + +  + ++        + ++          S+  + C+        +   +  
Sbjct: 79  SPNITDTMKFFLYVLE----MVSKPMIYW------ECSNATLTCEVLEGTDVELKLYQG- 127

Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                     +       +          ++C A N + ++     +   
Sbjct: 128 -------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 170

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 88.3 bits (219), Expect = 3e-21
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 44  APPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEH 96
             P +                +T +  C   G+P+P M W  +G     +  +      +
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
             + L++  V  SD G Y CV +N  GS      + +
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 88.3 bits (219), Expect = 3e-21
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 228 APPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEH 280
             P +                +T +  C   G+P+P M W  +G     +  +      +
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
             + L++  V  SD G Y CV +N  GS      + +
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 82.5 bits (204), Expect = 4e-19
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 137 RAPRLV----VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--- 189
           RAP       ++      PA ++V+  C   G P+P + W K+  EF ++     ++   
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 190 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
              SL + ++ P D G Y C   N  G      +L V
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 82.5 bits (204), Expect = 4e-19
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 321 RAPRLV----VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--- 373
           RAP       ++      PA ++V+  C   G P+P + W K+  EF ++     ++   
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 374 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
              SL + ++ P D G Y C   N  G      +L V
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 87.8 bits (218), Expect = 3e-21
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
           G+       P S     GST  + C+  G P+P   WF +   L  +          + +
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYM 53

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVA 313
           +  V     G Y C   N   S +S  
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRDSQDSKK 80

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
           +       P S     GST  + C+  G P+P   WF +   L  +          + ++
Sbjct: 2   SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMV 54

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVA 129
             V     G Y C   N   S +S  
Sbjct: 55  PYVDLEHQGTYWCHVYNDRDSQDSKK 80

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
            ++ V+P   +   GS++ + C   G P+P   W K+E     +            +  +
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYV 57

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
             +  G Y C   N      ++    +       
Sbjct: 58  DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
            ++ V+P   +   GS++ + C   G P+P   W K+E     +            +  +
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYV 57

Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
             +  G Y C   N      ++    +  E
Sbjct: 58  DLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 6  SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIF 48
          +    ++  V  EH G Y C   N         + + ++     
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 86.8 bits (215), Expect = 2e-20
 Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----- 190
              PR+V  P D+    G    + CK +G P P I W K       D++           
Sbjct: 7   DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66

Query: 191 GSLRLYNI-----GPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQ 234
           GSL    I        D G+Y C A N LGE V  +  L V  A      
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 85.6 bits (212), Expect = 4e-20
 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 12/113 (10%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH----- 96
            + PP  ++ P     S G  + + C  EG P P + W+  G  +++D      H     
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 97  DGFVLVLN----GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVK 144
            G +  L          D GVY CVA+N  G A S  A + +    A      
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA--AAHHHHH 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 84.1 bits (208), Expect = 1e-19
 Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 12/116 (10%)

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-- 280
           L     PP  ++ P     S G  + + C  EG P P + W+  G  +++D      H  
Sbjct: 3   LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 281 ---DGFVLVLN----GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVK 328
               G +  L          D GVY CVA+N  G A S  A + +    A      
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA--AAHHHHH 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 81.0 bits (200), Expect = 2e-18
 Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----- 374
              PR+V  P D+    G    + CK +G P P I W K       D++           
Sbjct: 7   DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66

Query: 375 GSLRLYNI-----GPQDSGLYRCTASNLLGEDV-AEGYLTVTG 411
           GSL    I        D G+Y C A N LGE V  +  L V  
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV--LV 102
            +   + +      G   +  C +E +    Q+TW+     L++ +     ++  V  L 
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 137
           +  + + D G Y C   N  G   S A + + G R
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV--LV 286
            +   + +      G   +  C +E +    Q+TW+     L++ +     ++  V  L 
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 321
           +  + + D G Y C   N  G   S A + + G R
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTG---SL 193
              +  +        G  V+  CK +      +++W     +      ++I        L
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
            + +I   D G YRC   N  GED +   L V G  
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 78.5 bits (194), Expect = 8e-18
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTG---SL 377
              +  +        G  V+  CK +      +++W     +      ++I        L
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
            + +I   D G YRC   N  GED +   L V G
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 90.3 bits (223), Expect = 6e-20
 Identities = 40/292 (13%), Positives = 78/292 (26%), Gaps = 23/292 (7%)

Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 111
           P       G +  +TC         +         +              V       + 
Sbjct: 6   PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG-----NNRKVYELSNVQED 60

Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSSVEIPCK-PDGEPLPR 169
               C +   +G + +   + +  +  P  V + P     P G ++ + C+   G P   
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 170 --ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED--------VA 219
             +   + E E   +         +  +          + C     L            A
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178

Query: 220 EGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTY 278
              L     P    Q          +   + C ++G  P+ +            +  VTY
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238

Query: 279 EHDGFVLVLNG-VRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVV 327
            +D F    +  V   D G     C       S E++  + I    AP +++
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 88.0 bits (217), Expect = 3e-19
 Identities = 46/282 (16%), Positives = 89/282 (31%), Gaps = 20/282 (7%)

Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-Q 201
           V P  +  P G SV + C    +    +       E    +   +    + ++Y +   Q
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ 58

Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQ 260
           +     C ++   G+  A+ +LTV   P      P+ +    G    + C VEG  P   
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 261 MT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE------SV 312
           +T         L  +  V    +    VL   R+     ++C  +             + 
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVL-VRRDHHGANFSCRTELDLRPQGLELFENTS 177

Query: 313 AMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLP---RISWSKDEAEFVEDRN 368
           A  ++     P    +          +   + C  DG       ++  +  +        
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237

Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           +      +    ++  +D G  R T + +LG    E   TVT
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 75.7 bits (185), Expect = 6e-15
 Identities = 33/246 (13%), Positives = 66/246 (26%), Gaps = 19/246 (7%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP-IFIQRPVSTTYST 59
                +     +S VQ +   +  C +  P G       +TV   P      P+ +    
Sbjct: 43  LLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV 100

Query: 60  GSTSRITCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 116
           G    + C VEG  P   +T         L  +  V    +    VL   R+     ++C
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL-VRRDHHGANFSC 159

Query: 117 VAQNSEGSAE------SVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLP- 168
             +             + A  ++     P    +          +   + C  DG     
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219

Query: 169 --RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY--RCTASNLLGEDVAEGYLT 224
             ++  +  +        +      +    ++  +D G     C              +T
Sbjct: 220 EAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279

Query: 225 VTGAPP 230
           +   P 
Sbjct: 280 IYSFPA 285

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 13/153 (8%)

Query: 4   RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---------PPIFIQRPVS 54
             +     +   +  HG  +SC           +L    +A         P    Q    
Sbjct: 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP 197

Query: 55  TTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG-VRESDAG 112
                 +   + C ++G  P+ +            +  VTY +D F    +  V   D G
Sbjct: 198 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEG 257

Query: 113 VYN--CVAQNSEGSAESVAMIRINGHRAPRLVV 143
                C       S E++  + I    AP +++
Sbjct: 258 TQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 84.4 bits (209), Expect = 1e-19
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 192
           R   ++    D+    GSS    C+        + W  D+     +  ++I         
Sbjct: 12  RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
           L L  +  +DSG     A    G+  A   L VT  P +F +   S+
Sbjct: 72  LTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPSS 114

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 82.1 bits (203), Expect = 8e-19
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HD 281
             V G     I+         GS++   C +       + WF D   L +++    +   
Sbjct: 7   GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQP 66

Query: 282 GFV--LVLNGVRESDAGVYNCVAQNSEGSAE 310
           G    L L  +   D+G     A +   SA 
Sbjct: 67  GGYHVLTLRQLALKDSGTIYFEAGDQRASAA 97

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFV--L 101
               I+         GS++   C +       + WF D   L +++    +   G    L
Sbjct: 13  RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVL 72

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
            L  +   D+G     A +   SA 
Sbjct: 73  TLRQLALKDSGTIYFEAGDQRASAA 97

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 376
           R   ++    D+    GSS    C+        + W  D+     +  ++I         
Sbjct: 12  RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSAS 428
           L L  +  +DSG     A    G+  A   L VT     E     SR   +S
Sbjct: 72  LTLRQLALKDSGTIYFEA----GDQRASAALRVT-----EKPSVFSRSGPSS 114

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVST 55
           L +  +  +  G     AG+        L VT   P +F +   S+
Sbjct: 72  LTLRQLALKDSGTIYFEAGDQRA--SAALRVTE-KPSVFSRSGPSS 114

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 82.2 bits (203), Expect = 4e-19
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 136 HRAPRLVV--KPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGS 192
              P +V   +        G+ V   C      P   + W++     +  R   +   G 
Sbjct: 6   PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNGI 63

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
           L + N+ P D+G Y CT SN+   D     L V
Sbjct: 64  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 82.2 bits (203), Expect = 4e-19
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 320 HRAPRLVV--KPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGS 376
              P +V   +        G+ V   C      P   + W++     +  R   +   G 
Sbjct: 6   PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNGI 63

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           L + N+ P D+G Y CT SN+   D     L V
Sbjct: 64  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 78.3 bits (193), Expect = 9e-18
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 223 LTVTGAPP-IFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEH 280
           L     P  + ++   S +   G+     C  +   P   + W    N       + +  
Sbjct: 3   LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-- 60

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
           +G +L +  V+ SDAG Y C   N     +  A + +
Sbjct: 61  NG-ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 38  LHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEH 96
           L        + ++   S +   G+     C  +   P   + W    N       + +  
Sbjct: 3   LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-- 60

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
           +G +L +  V+ SDAG Y C   N     +  A + +
Sbjct: 61  NG-ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 10/39 (25%), Positives = 14/39 (35%)

Query: 4  RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
             +  L I  VQ    G Y C   N   + +G   + V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 82.2 bits (203), Expect = 4e-19
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
             + V+   +    G  +++ C+   +    I+W +D  + VE    +I     + + + 
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG-EEVEVRDS 67

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVT 226
            P DSGLY C  S+  G D     + V+
Sbjct: 68  IPADSGLYACVTSSPSGSDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 82.2 bits (203), Expect = 4e-19
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
             + V+   +    G  +++ C+   +    I+W +D  + VE    +I     + + + 
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG-EEVEVRDS 67

Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            P DSGLY C  S+  G D     + V+
Sbjct: 68  IPADSGLYACVTSSPSGSDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 78.7 bits (194), Expect = 7e-18
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 101
              P        S     G   ++ C +       + W  DG  L   +      +   +
Sbjct: 6   QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE--EV 62

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
            +     +D+G+Y CV  +  GS  +   + +
Sbjct: 63  EVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 78.3 bits (193), Expect = 9e-18
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 287
            P        S     G   ++ C +       + W  DG  L   +      +   + +
Sbjct: 8   QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE--EVEV 64

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
                +D+G+Y CV  +  GS  +   + +
Sbjct: 65  RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 6  SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
          +  E+ +        G Y+CV  +P+G       V V
Sbjct: 58 TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 85.0 bits (210), Expect = 5e-19
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 29/186 (15%)

Query: 145 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVE------------------DRNH 185
           P  +    G SV +P + P GE +  I+W  +E                        +  
Sbjct: 5   PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64

Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI-FIQRPVSTTYSTG 244
              ++ SL+L N+  +D+G YR   S      ++   L +        +        +  
Sbjct: 65  NFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMT 124

Query: 245 STSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
               +TC VE         W   GN+L S  ++T        V    R S    Y C+A+
Sbjct: 125 CELHLTCSVEDADDNVSFRWEALGNTLSSQPNLT--------VSWDPRISSEQDYTCIAE 176

Query: 304 NSEGSA 309
           N+  + 
Sbjct: 177 NAVSNL 182

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 63.9 bits (155), Expect = 1e-11
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRG--DLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
           L +S ++ E  G Y                L +      I +        +      +TC
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131

Query: 68  LVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
            VE         W   GN+L S  ++T        V    R S    Y C+A+N+  + 
Sbjct: 132 SVEDADDNVSFRWEALGNTLSSQPNLT--------VSWDPRISSEQDYTCIAENAVSNL 182

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 52.3 bits (125), Expect = 8e-08
 Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 25/161 (15%)

Query: 70  EGHPLPQMTWFHDGNSL-------DSDDHVTYEHDGFV----------LVLNGVRESDAG 112
            G  +  +TW  +  SL            +   +              L L+ ++  D G
Sbjct: 24  AGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83

Query: 113 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRIS 171
            Y         +  S   +RI        V     +       + + C   D +      
Sbjct: 84  SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFR 143

Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
           W           N  +        ++        Y C A N
Sbjct: 144 WEALGNTLSSQPNLTVS-------WDPRISSEQDYTCIAEN 177

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 52.3 bits (125), Expect = 8e-08
 Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 25/161 (15%)

Query: 254 EGHPLPQMTWFHDGNSL-------DSDDHVTYEHDGFV----------LVLNGVRESDAG 296
            G  +  +TW  +  SL            +   +              L L+ ++  D G
Sbjct: 24  AGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83

Query: 297 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRIS 355
            Y         +  S   +RI        V     +       + + C   D +      
Sbjct: 84  SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFR 143

Query: 356 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           W           N  +        ++        Y C A N
Sbjct: 144 WEALGNTLSSQPNLTVS-------WDPRISSEQDYTCIAEN 177

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 19/87 (21%)

Query: 329 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVE------------------DRNH 369
           P  +    G SV +P + P GE +  I+W  +E                        +  
Sbjct: 5   PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64

Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASN 396
              ++ SL+L N+  +D+G YR   S 
Sbjct: 65  NFTQSYSLQLSNLKMEDTGSYRAQIST 91

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 82.1 bits (203), Expect = 6e-19
 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--------RTGSLRLYNIGPQ 201
             +     IP    G P P + W  + A   E +               G L+L N    
Sbjct: 13  PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72

Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
           ++G Y   A N  G+D  +      G P I
Sbjct: 73  NNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 42  VNAPP--IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
           V+  P   F++ P S          I   V+G+P P + WF++G  L+   ++  +    
Sbjct: 1   VHFAPTITFLESPTS-----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT 55

Query: 100 -------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
                   L L+     + G Y  +A+N  G  E       
Sbjct: 56  NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--------RTGSLRLYNIGPQ 385
             +     IP    G P P + W  + A   E +               G L+L N    
Sbjct: 13  PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72

Query: 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
           ++G Y   A N  G+D  +      G   ++
Sbjct: 73  NNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 225 VTGAPPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           V  AP I F++ P S          I   V+G+P P + WF++G  L+   ++  +    
Sbjct: 1   VHFAPTITFLESPTS-----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT 55

Query: 284 -------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
                   L L+     + G Y  +A+N  G  E       
Sbjct: 56  NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 8/46 (17%), Positives = 14/46 (30%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
           T+       L +      + G Y+ +A N  G     +       P
Sbjct: 55  TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 82.0 bits (203), Expect = 7e-19
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
                   LTV   P  F +   +   + G+T+ + C +       + W+    +L   D
Sbjct: 5   SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGD 62

Query: 275 HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSAE 310
             +   DG    L + G+   DAG Y C+      SA 
Sbjct: 63  RHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAM 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 28  GNPAGVYRGDLHVTVNA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL 86
           G+     R    +TV A P  F +   +   + G+T+ + C +       + W+    +L
Sbjct: 1   GSSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETL 58

Query: 87  DSDDHVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSAE 126
              D  +   DG    L + G+   DAG Y C+      SA 
Sbjct: 59  RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAM 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 179
           +S  S  + AM+ +      +      +  A  G++  + C+        + W K     
Sbjct: 2   SSGSSGRTSAMLTVRA-LPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETL 58

Query: 180 VEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
            +   H + + G    L++  +  +D+G Y C      G++     LTV   P   
Sbjct: 59  RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGP 110

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 363
           +S  S  + AM+ +      +      +  A  G++  + C+        + W K     
Sbjct: 2   SSGSSGRTSAMLTVRA-LPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETL 58

Query: 364 VEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
            +   H + + G    L++  +  +D+G Y C      G++     LTV  
Sbjct: 59  RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA 105

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 81.4 bits (201), Expect = 1e-18
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 38  LHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD 97
           + +TV  PP  +               I  +V G+P P + W H+G  L     +  E+ 
Sbjct: 1   VALTVYYPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57

Query: 98  G------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 145
                    L+ N     + G Y  +A+N  G+A             P   V P
Sbjct: 58  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 77.2 bits (190), Expect = 5e-17
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
           LTV   PP  +               I  +V G+P P + W H+G  L     +  E+  
Sbjct: 3   LTVY-YPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ 58

Query: 283 ------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 329
                   L+ N     + G Y  +A+N  G+A             P   V P
Sbjct: 59  EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 10/108 (9%)

Query: 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-- 188
           + +  +  PR+V               I     G P P + W  +     E +   +   
Sbjct: 1   VALTVYYPPRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57

Query: 189 -----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
                  G L        ++G Y   A N LG             P  
Sbjct: 58  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 105

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 74.9 bits (184), Expect = 3e-16
 Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 14/120 (11%)

Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-- 372
           + +  +  PR+V               I     G P P + W  +     E +   +   
Sbjct: 1   VALTVYYPPRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57

Query: 373 -----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSA 427
                  G L        ++G Y   A N LG                EP P     P+ 
Sbjct: 58  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL----KEPFPVDEVSPTP 113

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVST 55
           +   S   L+ +     + G Y+ +A NP G     ++      P  +     T
Sbjct: 59  EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPT 112

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 89.8 bits (222), Expect = 2e-18
 Identities = 37/312 (11%), Positives = 84/312 (26%), Gaps = 31/312 (9%)

Query: 58  STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
           S      +   V   PL    W   G+   + +          L ++    +   V   V
Sbjct: 89  SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE-------LAISTFWPNFYQVIFEV 141

Query: 118 AQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
             +      ++  +++  +        ++  ++   AG      C   G  +        
Sbjct: 142 ITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201

Query: 176 EAEFVEDRNHKI------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
             +  +    +I          S  + N   +D+G YRC      G  ++     V   P
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261

Query: 230 PIFIQRP-VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
           P+ I  P +++  +T    ++         P +    +  +     +     D     + 
Sbjct: 262 PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIG 321

Query: 289 GVRESDAGVYNCVAQNSEG---SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
            +        + +          +   A+        P  +  P  +      S +I   
Sbjct: 322 HLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADP--MRGPRKLEVVEVKSRQI--- 376

Query: 346 PDGEPLPRISWS 357
                   I W 
Sbjct: 377 -------TIRWE 381

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 82.5 bits (203), Expect = 3e-16
 Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 15/186 (8%)

Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
           S      +   V   PL    W   G+   + +          L ++    +   V   V
Sbjct: 89  SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE-------LAISTFWPNFYQVIFEV 141

Query: 302 AQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
             +      ++  +++  +        ++  ++   AG      C   G  +        
Sbjct: 142 ITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201

Query: 360 EAEFVEDRNHKI------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN 413
             +  +    +I          S  + N   +D+G YRC      G  ++     V  E 
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261

Query: 414 SVEPAP 419
            V  AP
Sbjct: 262 PVPIAP 267

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 58.3 bits (140), Expect = 9e-09
 Identities = 23/128 (17%), Positives = 34/128 (26%), Gaps = 9/128 (7%)

Query: 9   ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF----IQRPVSTTYSTGSTSR 64
           EL IS            V  +    Y     V V   P        R  +   + G  + 
Sbjct: 124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFAT 183

Query: 65  ITCLVEGHPLPQMTWF---HDGNSLDSDDHVTYEHDGFVLVLN--GVRESDAGVYNCVAQ 119
             C   G  +     +    D       +        F+   N     + DAG Y C+ +
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243

Query: 120 NSEGSAES 127
              G   S
Sbjct: 244 TEGGVGIS 251

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 33/189 (17%)

Query: 145 PFDMRAPAGSSVEIPC-KPDGEPLPRISWSKDEAEFV----------------EDRNHKI 187
             ++ A  GS+V +   K       R++W     + +                +DR    
Sbjct: 6   VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65

Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTS 247
              G+LR+YN+  +D G Y     +   ED  +  + V         +P+       S +
Sbjct: 66  KTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVYEMVS----KPMIY--WECSNA 118

Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
            +TC V      ++  +     L S    T         ++    +    + C A N   
Sbjct: 119 TLTCEVLEGTDVELKLYQGKEHLRSLRQKT---------MSYQWTNLRAPFKCKAVNRVS 169

Query: 308 SAESVAMIR 316
               + ++ 
Sbjct: 170 QESEMEVVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 15/123 (12%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L I  V +E  G Y     +        + + V              Y   S + +TC V
Sbjct: 71  LRIYNVSKEDRGDYYMRMLHETEDQW-KITMEVYEMV-----SKPMIYWECSNATLTCEV 124

Query: 70  EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
                 ++  +     L S    T         ++    +    + C A N       + 
Sbjct: 125 LEGTDVELKLYQGKEHLRSLRQKT---------MSYQWTNLRAPFKCKAVNRVSQESEME 175

Query: 130 MIR 132
           ++ 
Sbjct: 176 VVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 20/146 (13%)

Query: 71  GHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
                 + +F +G     +      V  +     L +  V + D G Y     +      
Sbjct: 37  TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQW 96

Query: 127 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 186
            + M        P +  +         S+  + C+        +   +            
Sbjct: 97  KITMEVYEMVSKPMIYWE--------CSNATLTCEVLEGTDVELKLYQG--------KEH 140

Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASN 212
           +       +          ++C A N
Sbjct: 141 LRSLRQKTMSYQWTNLRAPFKCKAVN 166

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 20/146 (13%)

Query: 255 GHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
                 + +F +G     +      V  +     L +  V + D G Y     +      
Sbjct: 37  TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQW 96

Query: 311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 370
            + M        P +  +         S+  + C+        +   +            
Sbjct: 97  KITMEVYEMVSKPMIYWE--------CSNATLTCEVLEGTDVELKLYQG--------KEH 140

Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASN 396
           +       +          ++C A N
Sbjct: 141 LRSLRQKTMSYQWTNLRAPFKCKAVN 166

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 18/98 (18%)

Query: 329 PFDMRAPAGSSVEIPC-KPDGEPLPRISWSKDEAEFV----------------EDRNHKI 371
             ++ A  GS+V +   K       R++W     + +                +DR    
Sbjct: 6   VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65

Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
              G+LR+YN+  +D G Y     +   ED  +  + V
Sbjct: 66  KTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEV 102

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 118 AQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSSVEIPCKPDGEPLPRISWSK 174
           +  S G+      IR      P++ +            G  + +     G+P P++ W+K
Sbjct: 2   SSGSSGTLAQPVTIR-EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60

Query: 175 DEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
             A  ++     +  +       +      DSG Y  +      +D A   + V    
Sbjct: 61  GGAP-LDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 27  AGNPAGVYRGDLHVT--VNAPPIFIQRPVSTTYS--TGSTSRITCLVEGHPLPQMTWFHD 82
           +   +G     + +      P I + R +  TY    G    +    +G P PQ+ W   
Sbjct: 2   SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61

Query: 83  GNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
           G  LD+   HV       V  +     SD+G Y    Q       +   IR+
Sbjct: 62  GAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 228 APPIFIQRPVSTTYS--TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFV 284
            P I + R +  TY    G    +    +G P PQ+ W   G  LD+   HV       V
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTV 80

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
             +     SD+G Y    Q       +   IR+
Sbjct: 81  FFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 302 AQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSSVEIPCKPDGEPLPRISWSK 358
           +  S G+      IR      P++ +            G  + +     G+P P++ W+K
Sbjct: 2   SSGSSGTLAQPVTIR-EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60

Query: 359 DEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
             A  ++     +  +       +      DSG Y  +      +D A   + V 
Sbjct: 61  GGAP-LDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 5/40 (12%), Positives = 8/40 (20%)

Query: 7   STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
            T   +    R   G Y              + + V    
Sbjct: 78  DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 78.9 bits (195), Expect = 7e-18
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           + +  P   I+       + G    + C +     P + W  D  ++          +G 
Sbjct: 3   SGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGT 61

Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAE 310
           +  LV+ G    DAG Y C  + S+ +A 
Sbjct: 62  MAMLVIRGASLKDAGEYTCEVEASKSTAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
            P   I+       + G    + C +     P + W  D  ++          +G +  L
Sbjct: 7   GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
           V+ G    DAG Y C  + S+ +A 
Sbjct: 66  VIRGASLKDAGEYTCEVEASKSTAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 195
             ++    D     G  VE+ C+      P + W KD     + + + +   G    L +
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
                +D+G Y C          A   L V     
Sbjct: 68  RGASLKDAGEYTCEVEASKST--AS--LHVEEKAS 98

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 379
             ++    D     G  VE+ C+      P + W KD     + + + +   G    L +
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
                +D+G Y C          A   L V  E +  P
Sbjct: 68  RGASLKDAGEYTCEVEASKST--AS--LHVE-EKASGP 100

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 82.0 bits (202), Expect = 9e-18
 Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 28/195 (14%)

Query: 150 APAGSSVEIPCKPDGEPL----PRISWSKDEAEFVEDRNHKIH-------RT-------G 191
                   + C  +         RI W K++   +   +  ++       RT        
Sbjct: 6   KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY---LTVTGAPPIFIQRPVSTTYSTGSTSR 248
           S+ +  + P D G Y C       +     +   +T++                T +  R
Sbjct: 66  SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125

Query: 249 ITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVL-----VLNGVRESDAGVYNCVA 302
           I C   G  P P ++W  +G  L++ +    +     L      L+    +    + C+ 
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD-FNMTTNHSFMCLI 184

Query: 303 QNSEGSAESVAMIRI 317
           +              
Sbjct: 185 KYGHLRVNQTFNWNT 199

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 13/135 (9%)

Query: 10  LVISGVQREHGGRYSCVAGNPAG-----VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
           +VI  ++    G Y CV            +  ++ ++V A              T +  R
Sbjct: 67  IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE-IPTSNIRR 125

Query: 65  ITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVL-----VLNGVRESDAGVYNCVA 118
           I C   G  P P ++W  +G  L++ +    +     L      L+    +    + C+ 
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD-FNMTTNHSFMCLI 184

Query: 119 QNSEGSAESVAMIRI 133
           +              
Sbjct: 185 KYGHLRVNQTFNWNT 199

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 12/126 (9%)

Query: 99  FVLVLNGVRESDAGVYNCVAQNSEGS---AESVAMIRINGHRAPRLVVKPFDMRAPAGSS 155
             +V+  +R SD G Y CV    E      E +A + ++            D   P  + 
Sbjct: 65  LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFP-TPSISDFEIPTSNI 123

Query: 156 VEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG------PQDSGLYRC 208
             I C    G P P +SW ++  E +   N  + +     LY +          +  + C
Sbjct: 124 RRIICSTSGGFPEPHLSWLENGEE-LNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMC 182

Query: 209 TASNLL 214
                 
Sbjct: 183 LIKYGH 188

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 18/95 (18%)

Query: 334 APAGSSVEIPCKPDGEPL----PRISWSKDEAEFVEDRNHKIH-------RT-------G 375
                   + C  +         RI W K++   +   +  ++       RT        
Sbjct: 6   KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           S+ +  + P D G Y C       +     +L   
Sbjct: 66  SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV 100

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 78.5 bits (194), Expect = 9e-18
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           + +  P  F +         G  + + C++     P + W +  N L   D  +   +G 
Sbjct: 3   SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA 61

Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAE 310
           +  LV+  +R  D+G Y+C   +   SA 
Sbjct: 62  MLELVVRNLRPQDSGRYSCSFGDQTTSAT 90

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
            P  F +         G  + + C++     P + W +  N L   D  +   +G +  L
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
           V+  +R  D+G Y+C   +   SA 
Sbjct: 66  VVRNLRPQDSGRYSCSFGDQTTSAT 90

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
             R      D+    G +  + C       P + W            + + + G    L 
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
           + N+ PQDSG Y C+     G+      LTVT  P   
Sbjct: 67  VRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
             R      D+    G +  + C       P + W            + + + G    L 
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS 422
           + N+ PQDSG Y C+     G+      LTVT      P+  +S
Sbjct: 67  VRNLRPQDSGRYSCSF----GDQTTSATLTVTA----LPSGPSS 102

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
               F ++P S   + GS +      E     ++ W   G+ + + +      +G    L
Sbjct: 7   PVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTL 65

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
            +  V  +D G Y  +A +S+   +
Sbjct: 66  TVREVGPADQGSYAVIAGSSKVKFD 90

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 285
               F ++P S   + GS +      E     ++ W   G+ + + +      +G    L
Sbjct: 7   PVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTL 65

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAE 310
            +  V  +D G Y  +A +S+   +
Sbjct: 66  TVREVGPADQGSYAVIAGSSKVKFD 90

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 195
                KP  +   AGS      + +     ++ W +  ++      + +   G   +L +
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETERAG-VKVRWQRGGSDISASNKYGLATEGTRHTLTV 67

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
             +GP D G Y   A    G    +  L V 
Sbjct: 68  REVGPADQGSYAVIA----GSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 379
                KP  +   AGS      + +     ++ W +  ++      + +   G   +L +
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETERAG-VKVRWQRGGSDISASNKYGLATEGTRHTLTV 67

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
             +GP D G Y   A    G    +  L V 
Sbjct: 68  REVGPADQGSYAVIA----GSSKVKFDLKVI 94

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
           G   + G +      P             G+++ ++C V      ++TW+ DG  L S  
Sbjct: 1   GSSGSSGKVVFAKEQPA----HREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSS 55

Query: 275 HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSAE 310
            V  E  G    LV+    +++AG Y+C A   + S  
Sbjct: 56  KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LV 102
                          G+++ ++C V      ++TW+ DG  L S   V  E  G    LV
Sbjct: 11  FAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLV 69

Query: 103 LNGVRESDAGVYNCVAQNSEGSAE 126
           +    +++AG Y+C A   + S  
Sbjct: 70  VQQAGQAEAGEYSCEAGGQQLSFR 93

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 323 PRLVVKPF-----DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-- 375
            ++V         +++A AG+S  + C+   +    ++W KD  +       ++   G  
Sbjct: 7   GKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCT 65

Query: 376 -SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
             L +   G  ++G Y C A    G       L V G+
Sbjct: 66  RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 139 PRLVVKPF-----DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-- 191
            ++V         +++A AG+S  + C+   +    ++W KD  +       ++   G  
Sbjct: 7   GKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCT 65

Query: 192 -SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
             L +   G  ++G Y C A    G       L V G
Sbjct: 66  RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAG 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYE 279
           + +  P + +          G    +   V      Q+ W  +G  L  +D       ++
Sbjct: 3   SGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFK 61

Query: 280 HDGFV--LVLNGVRESDAGVYNCVAQNSEGSAE 310
            DG    L+ + V + D G Y  +    +  AE
Sbjct: 62  KDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGF 99
            P + +          G    +   V      Q+ W  +G  L  +D       ++ DG 
Sbjct: 7   GPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65

Query: 100 V--LVLNGVRESDAGVYNCVAQNSEGSAE 126
              L+ + V + D G Y  +    +  AE
Sbjct: 66  RHILIFSDVVQEDRGRYQVITNGGQCEAE 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------RTG 191
             +V    D +   G  VE+  +   E   ++ W K+  E   + + K         +  
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            L   ++  +D G Y+   +        E  L V
Sbjct: 68  ILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------RTG 375
             +V    D +   G  VE+  +   E   ++ W K+  E   + + K         +  
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            L   ++  +D G Y+   +        E  L V
Sbjct: 68  ILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           + +     F +   +       T+  TC    HP   +TW      L +        +G 
Sbjct: 3   SGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGL 61

Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAE 310
              L ++ + ++D+  Y C    ++  A+
Sbjct: 62  TLRLTISALEKADSDTYTCDIGQAQSRAQ 90

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
               F +   +       T+  TC    HP   +TW      L +        +G    L
Sbjct: 7   GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
            ++ + ++D+  Y C    ++  A+
Sbjct: 66  TISALEKADSDTYTCDIGQAQSRAQ 90

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 16/115 (13%)

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           GS+ S          A     +  +++     +    CK    P   ++W K   E    
Sbjct: 1   GSSGSSG--------ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRAS 51

Query: 183 RNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
             H+  + G    L +  +   DS  Y C      G+  +   L V G       
Sbjct: 52  GKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPSS 102

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 16/111 (14%)

Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
           GS+ S          A     +  +++     +    CK    P   ++W K   E    
Sbjct: 1   GSSGSSG--------ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRAS 51

Query: 367 RNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
             H+  + G    L +  +   DS  Y C      G+  +   L V G  S
Sbjct: 52  GKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 37  DLHVTVNAPPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTY 94
              +       F ++   +   S G   R+T  +      ++ W  +G  +  S     +
Sbjct: 7   HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIF 65

Query: 95  EHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAE 126
           E  G    L ++    +D   Y CV    + S E
Sbjct: 66  ESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 228 APPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDG--F 283
               F ++   +   S G   R+T  +      ++ W  +G  +  S     +E  G   
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAE 310
            L ++    +D   Y CV    + S E
Sbjct: 73  TLTISQCSLADDAAYQCVVGGEKCSTE 99

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 10/95 (10%)

Query: 137 RAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG--- 191
           ++     K     +   G  + +  +        + W K+  E       +     G   
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
           +L +      D   Y+C      G +     L V 
Sbjct: 73  TLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 10/95 (10%)

Query: 321 RAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG--- 375
           ++     K     +   G  + +  +        + W K+  E       +     G   
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           +L +      D   Y+C      G +     L V 
Sbjct: 73  TLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 3/90 (3%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
           + +       +R  +     G +    C++          W   G ++ S         G
Sbjct: 3   SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62

Query: 283 --FVLVLNGVRESDAGVYNCVAQNSEGSAE 310
             ++LV+     SDAG      +     A 
Sbjct: 63  RKYILVVREAAPSDAGEVVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FV 100
                 +R  +     G +    C++          W   G ++ S         G  ++
Sbjct: 7   GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAE 126
           LV+     SDAG      +     A 
Sbjct: 67  LVVREAAPSDAGEVVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 13/100 (13%), Positives = 22/100 (22%), Gaps = 8/100 (8%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---S 192
               +  +   M    G S    C            W+            +  R G    
Sbjct: 7   GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
           L +    P D+G    +         ++  L V       
Sbjct: 67  LVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPS 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 8/93 (8%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---S 376
               +  +   M    G S    C            W+            +  R G    
Sbjct: 7   GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           L +    P D+G    +         ++  L V
Sbjct: 67  LVVREAAPSDAGEVVFSV----RGLTSKASLIV 95

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 76.9 bits (189), Expect = 5e-17
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 12/119 (10%)

Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM-TWFHDGNSLDSD 273
           G   + G LTV G P   I    +     G   +I C +   P P    W    N L+S 
Sbjct: 1   GSSGSSGTLTVNGPP--IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58

Query: 274 DHVTYE------HDGF--VLVLNGVRESD-AGVYNCVAQNSEGSAESVAMIRINGHRAP 323
               Y        +G    L ++ +  +D   +YNC A NS GS   +  ++  G    
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 76.5 bits (188), Expect = 8e-17
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 39  HVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM-TWFHDGNSLDSDDHVTYE-- 95
            +TVN PP  I    +     G   +I C +   P P    W    N L+S     Y   
Sbjct: 8   TLTVNGPP-IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 66

Query: 96  ----HDGF--VLVLNGVRESD-AGVYNCVAQNSEGSAESVAMIRINGHRAP 139
                +G    L ++ +  +D   +YNC A NS GS   +  ++  G    
Sbjct: 67  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 73.8 bits (181), Expect = 7e-16
 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 14/119 (11%)

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVE 181
           GS+ S   + +N    P ++       A  G   +I C     P P RI+WS  E     
Sbjct: 1   GSSGSSGTLTVN---GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57

Query: 182 DRNHKIH---------RTGSLRLYNIGPQD-SGLYRCTASNLLGEDVAEGYLTVTGAPP 230
             + +              +L + NI   D   +Y CTA N  G D     L   G+  
Sbjct: 58  GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 73.8 bits (181), Expect = 7e-16
 Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVE 365
           GS+ S   + +N    P ++       A  G   +I C     P P RI+WS  E     
Sbjct: 1   GSSGSSGTLTVN---GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57

Query: 366 DRNHKIH---------RTGSLRLYNIGPQD-SGLYRCTASNLLGEDVAEGYLTVTGENSV 415
             + +              +L + NI   D   +Y CTA N  G D     L   G    
Sbjct: 58  GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117

Query: 416 EPA 418
            P+
Sbjct: 118 GPS 120

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 1   TDDRRSSTELVISGVQREH-GGRYSCVAGNPAGVYRGDLHVTVNAPPI 47
           + +    + L IS + R      Y+C A N  G     + +      +
Sbjct: 69  STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 76.3 bits (188), Expect = 7e-17
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           + +  P  F Q   +   S G+T+ + C +    +  + W     +L      + + DG 
Sbjct: 3   SGSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGT 60

Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAE 310
              L ++ +  +DAG Y+C+      SA 
Sbjct: 61  RCELQIHDLSVADAGEYSCMCGQERTSAT 89

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
            P  F Q   +   S G+T+ + C +    +  + W     +L      + + DG    L
Sbjct: 7   GPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
            ++ +  +DAG Y+C+      SA 
Sbjct: 65  QIHDLSVADAGEYSCMCGQERTSAT 89

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
             R         A  G++  + C+     +  + W K      +   + + + G    L+
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTT 240
           ++++   D+G Y C      G++     LTV   P  F +    ++
Sbjct: 66  IHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPSS 107

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
             R         A  G++  + C+     +  + W K      +   + + + G    L+
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
           ++++   D+G Y C      G++     LTV  
Sbjct: 66  IHDLSVADAGEYSCMC----GQERTSATLTVRA 94

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 9   ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
           EL I  +     G YSC+ G      R    +TV A P      
Sbjct: 63  ELQIHDLSVADAGEYSCMCGQE----RTSATLTVRALPARFTEG 102

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
           A     +         G T+     +   P     W   G  L +        DG    L
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
           +L+  +    G  +  A N++ +A 
Sbjct: 63  ILHNCQLGMTGEVSFQAANTKSAAN 87

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 285
           A     +         G T+     +   P     W   G  L +        DG    L
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAE 310
           +L+  +    G  +  A N++ +A 
Sbjct: 63  ILHNCQLGMTGEVSFQAANTKSAAN 87

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 8/93 (8%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 193
               +    + +    G +     +   EP     W           + +I   G    L
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
            L+N     +G     A+N      +   L V 
Sbjct: 63  ILHNCQLGMTGEVSFQAAN----TKSAANLKVK 91

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 8/93 (8%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 377
               +    + +    G +     +   EP     W           + +I   G    L
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            L+N     +G     A+N      +   L V 
Sbjct: 63  ILHNCQLGMTGEVSFQAAN----TKSAANLKVK 91

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           + +      +Q     T      +   C V         W+ +G  +     +T  H G 
Sbjct: 3   SGSSGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGR 61

Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 336
              LV++ VR  D G Y  V      S  +            +L      +  P+
Sbjct: 62  FHKLVIDDVRPEDEGDYTFVPDGYALSLSA------------KLNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 15/114 (13%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
             +     +Q     T      +   C V         W+ +G  +     +T  H G  
Sbjct: 4   GSSGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRF 62

Query: 101 --LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 152
             LV++ VR  D G Y  V      S  +            +L      +  P+
Sbjct: 63  HKLVIDDVRPEDEGDYTFVPDGYALSLSA------------KLNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 9/104 (8%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
              ++    D+   A       C+   E      W K+  E    +   I   G    L 
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLV 66

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS 238
           + ++ P+D G Y                L       I +  P S
Sbjct: 67  IDDVRPEDEGDYTFVPDGYALS--LSAKLNFL---EIKVSGPSS 105

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 6/100 (6%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
              ++    D+   A       C+   E      W K+  E    +   I   G    L 
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLV 66

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
           + ++ P+D G Y                L         P+
Sbjct: 67  IDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSGPS 104

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 75.4 bits (185), Expect = 3e-16
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 17/117 (14%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVE------------- 365
               + KP       G  +    K   E L   P I W K +   +              
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS 422
           +R+ +++ T  +++       +G YRC  +     D     L V       P   + 
Sbjct: 67  ERHSRVY-TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSG 122

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 75.0 bits (184), Expect = 3e-16
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 17/110 (15%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVE------------- 181
               + KP       G  +    K   E L   P I W K +   +              
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
           +R+ +++ T  +++       +G YRC  +     D     L V  +   
Sbjct: 67  ERHSRVY-TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 71.9 bits (176), Expect = 4e-15
 Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVTY 94
           + ++  +FI++P   T   G        V+   L   P + WF       +  +  H+  
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 95  EHDG--------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 140
           +           F + +   +++ AG Y C     +        + ++      
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 71.6 bits (175), Expect = 5e-15
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 14/115 (12%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVT 277
           +   +  +FI++P   T   G        V+   L   P + WF       +  +  H+ 
Sbjct: 2   SSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61

Query: 278 YEHDG--------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
            +           F + +   +++ AG Y C     +        + ++      
Sbjct: 62  LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 7/45 (15%), Positives = 12/45 (26%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
             R  + E+ I   +    G Y C              + V+   
Sbjct: 69  HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 75.0 bits (184), Expect = 3e-16
 Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 12/104 (11%)

Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTGSLRLYNIGPQDSGLYR 207
           IP   DG+P P + W  + +   E                 R G LRL      ++G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 208 CTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
             A+N  G+  A         P  F   P      T STS    
Sbjct: 80  LLAANPFGQASASIMAAFMDNP--FEFNPEDPIPDTNSTSGDPV 121

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 19/132 (14%)

Query: 45  PP--IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 100
            P  + +   V   +       I   V+G P P + W  +G+ L+    +  E       
Sbjct: 3   MPASVQLHTAVEMHHWC-----IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57

Query: 101 -------LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
                  L LN     + G Y  +A N  G A +  M              P D      
Sbjct: 58  ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF---MDNPFEFNPEDPIPDTN 114

Query: 154 SSVEIPCKPDGE 165
           S+   P +   E
Sbjct: 115 STSGDPVEKKDE 126

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 19/132 (14%)

Query: 229 PP--IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
            P  + +   V   +       I   V+G P P + W  +G+ L+    +  E       
Sbjct: 3   MPASVQLHTAVEMHHWC-----IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57

Query: 285 -------LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 337
                  L LN     + G Y  +A N  G A +  M              P D      
Sbjct: 58  ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF---MDNPFEFNPEDPIPDTN 114

Query: 338 SSVEIPCKPDGE 349
           S+   P +   E
Sbjct: 115 STSGDPVEKKDE 126

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 68.4 bits (167), Expect = 6e-14
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 14/106 (13%)

Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTGSLRLYNIGPQDSGLYR 391
           IP   DG+P P + W  + +   E                 R G LRL      ++G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 392 CTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTI 437
             A+N  G+  A             P      +P     S + D +
Sbjct: 80  LLAANPFGQASASIMAAFM----DNPFEFNPEDPIPDTNSTSGDPV 121

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
           L ++     + G Y+ +A NP G     +       P F   P      T STS    
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP-FEFNPEDPIPDTNSTSGDPV 121

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 44  APPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
           + P+ I  P   VS T++T     +TC +        TW+ DG  ++  + +  + DG  
Sbjct: 6   SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRK 64

Query: 101 --LVLNGVRESDAGVYNCVAQNSEGSAE 126
             L+L   +  D+G + C  +       
Sbjct: 65  HRLILPEAKVQDSGEFECRTEGVSAFFG 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 228 APPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 284
           + P+ I  P   VS T++T     +TC +        TW+ DG  ++  + +  + DG  
Sbjct: 6   SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRK 64

Query: 285 --LVLNGVRESDAGVYNCVAQNSEGSAE 310
             L+L   +  D+G + C  +       
Sbjct: 65  HRLILPEAKVQDSGEFECRTEGVSAFFG 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 319 GHRAPRLVVKP---FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG 375
           G   P  ++ P     +       V + C+         +W KD  +  E     +   G
Sbjct: 4   GSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVD-FPATWYKDGQKVEESELLVVKMDG 62

Query: 376 ---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS 422
               L L     QDSG + C          A   +TV      +P+  +S
Sbjct: 63  RKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ-----DPSGPSS 103

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 135 GHRAPRLVVKP---FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG 191
           G   P  ++ P     +       V + C+         +W KD  +  E     +   G
Sbjct: 4   GSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVD-FPATWYKDGQKVEESELLVVKMDG 62

Query: 192 ---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
               L L     QDSG + C          A   +TV 
Sbjct: 63  RKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 82.2 bits (203), Expect = 3e-16
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
              + + +   + A P FI +P  T    G ++   C V     P +TW  D   L    
Sbjct: 468 EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 527

Query: 275 HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
                ++G    L +N V+  D G Y   A+NS G+ E +  + +
Sbjct: 528 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 81.8 bits (202), Expect = 4e-16
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LV 102
            P FI +P  T    G ++   C V     P +TW  D   L         ++G    L 
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
           +N V+  D G Y   A+NS G+ E +  + +
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 72.9 bits (179), Expect = 2e-13
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 3/111 (2%)

Query: 119 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 178
           ++                  PR +VKP+      G S    C+      P ++W KD+ E
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522

Query: 179 FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
             +   +     G    L +  +   D G Y   A N  G      +L VT
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 72.9 bits (179), Expect = 2e-13
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 3/111 (2%)

Query: 303 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
           ++                  PR +VKP+      G S    C+      P ++W KD+ E
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522

Query: 363 FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
             +   +     G    L +  +   D G Y   A N  G      +L VT
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 36  GDLHVTVNAPPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 92
           G    +      +I  P   V           +TC +   P  ++ W  DG  +     +
Sbjct: 1   GSSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPAL 59

Query: 93  TYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAE 126
             + +     LVL  V+  D+G Y C   +   S  
Sbjct: 60  LLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 70.2 bits (172), Expect = 9e-15
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 228 APPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-- 282
               +I  P   V           +TC +   P  ++ W  DG  +     +  + +   
Sbjct: 9   DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV 67

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAE 310
             LVL  V+  D+G Y C   +   S  
Sbjct: 68  RRLVLPAVQLEDSGEYLCEIDDESASFT 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)

Query: 123 GSAESVAMIRINGHRAPRLVVKP---FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 179
           GS+ S      +G      +V P     + A     V + C+    P   + W+KD  E 
Sbjct: 1   GSSGS------SGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEV 53

Query: 180 VEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
           VE     + +      L L  +  +DSG Y C       ++ A   +TVT  P   I 
Sbjct: 54  VESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIY 107

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 307 GSAESVAMIRINGHRAPRLVVKP---FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 363
           GS+ S      +G      +V P     + A     V + C+    P   + W+KD  E 
Sbjct: 1   GSSGS------SGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEV 53

Query: 364 VEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
           VE     + +      L L  +  +DSG Y C       ++ A   +TVT     EP   
Sbjct: 54  VESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVT-----EPPVR 104

Query: 421 TSREPSAS 428
                 +S
Sbjct: 105 IIYSGPSS 112

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 9   ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
            LV+  VQ E  G Y C   + +  +     VTV  PP+ I   
Sbjct: 69  RLVLPAVQLEDSGEYLCEIDDESASFT----VTVTEPPVRIIYS 108

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.6 bits (199), Expect = 5e-16
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIHRTGS 192
            AP +V  P D+    G + E+ C+     L  +SW       +          +   G+
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
           L   N+  QD+G+Y C  SN +G   A   L VTG   
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIHRTGS 376
            AP +V  P D+    G + E+ C+     L  +SW       +          +   G+
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
           L   N+  QD+G+Y C  SN +G   A   L VTG
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS----DDHVTYEHDGFV 100
            P+ ++ P     + G  + + C      L  ++W     ++ +       +    DG  
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG-T 398

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           L    V   D G+Y C+  NS G+  + A + + G
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS----DDHVTYEHDGFV 284
            P+ ++ P     + G  + + C      L  ++W     ++ +       +    DG  
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG-T 398

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
           L    V   D G+Y C+  NS G+  + A + + G
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
           L  + V  +  G Y+C+  N  G       + V    
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 78.8 bits (194), Expect = 7e-16
 Identities = 46/252 (18%), Positives = 73/252 (28%), Gaps = 28/252 (11%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG-------DLHVTVNAPPIFIQRPVS 54
             R       +S V   H G Y+C   +P              + VT N     +     
Sbjct: 68  HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127

Query: 55  TTYSTGSTSRITCLVEGHPLPQM-TWFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESD 110
               +G    + C      + +      +G S D    V   HDG       +  +  + 
Sbjct: 128 PLVKSGERVILQC--WSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185

Query: 111 AGVYNCVAQNSEGSAESVA-----MIRI-NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 164
           AG Y C    +    +  A      I +   +  P L  +P      AG SV + C    
Sbjct: 186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPK-VQAGESVTLSCSSR- 243

Query: 165 EPLPRISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYRCTASNLLGEDVAEGY 222
                   S++                + +  + +GP    G YRC  S           
Sbjct: 244 SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYEWSDP 303

Query: 223 -----LTVTGAP 229
                ++VTG P
Sbjct: 304 SDPLLVSVTGNP 315

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 45/264 (17%), Positives = 78/264 (29%), Gaps = 24/264 (9%)

Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 210
           P G  V + C             K++   +   + +I +  S  +  +    +G Y C  
Sbjct: 36  PRGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQE-SFNMSPVTTAHAGNYTCRG 93

Query: 211 SNLLGEDVAEGY-----LTVTGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM-TW 263
           S+               + VTG      +         +G    + C      + +    
Sbjct: 94  SHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQC--WSDIMFEHFFL 151

Query: 264 FHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVA-----MI 315
             +G S D    V   HDG       +  +  + AG Y C    +    +  A      I
Sbjct: 152 HKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDI 211

Query: 316 RI-NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
            +   +  P L  +P      AG SV + C            S++               
Sbjct: 212 VVTGPYEKPSLSAQPGPK-VQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVN 269

Query: 375 GSLR-LYNIGP-QDSGLYRCTASN 396
            + +  + +GP    G YRC  S 
Sbjct: 270 RTFQADFPLGPATHGGTYRCFGSF 293

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 24/189 (12%)

Query: 223 LTVTGAPPIFIQRPV-----STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
            +  G       +P      S     G    + C    H       + +        H  
Sbjct: 16  GSHMGGQD----KPFLSAWPSAVVPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGR 70

Query: 278 YEHDGFVLVLNGVRESDAGVYNCVAQNSE----GSAES--VAMIRINGHRAPRLVVKPFD 331
              + F +  + V  + AG Y C   +       SA S  V ++    HR P L+  P  
Sbjct: 71  IFQESFNM--SPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP 128

Query: 332 MRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRTGSLRLYNIGP---QDS 387
           +   +G  V + C  D          K+  ++       +IH   S   ++IGP     +
Sbjct: 129 L-VKSGERVILQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186

Query: 388 GLYRCTASN 396
           G YRC  S 
Sbjct: 187 GTYRCYGSV 195

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 73.2 bits (179), Expect = 1e-15
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 13/110 (11%)

Query: 38  LHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVTYE 95
                   P    +P + +   GS    TC         MT  W  D  +L   +   Y 
Sbjct: 3   FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYA 62

Query: 96  HDGF----------VLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRIN 134
           H             +L L  V  +  G Y CV  N  GS+ S  A + IN
Sbjct: 63  HLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 72.4 bits (177), Expect = 2e-15
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 13/102 (12%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVTYEHDGF---- 283
           P    +P + +   GS    TC         MT  W  D  +L   +   Y H       
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 284 ------VLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRIN 318
                 +L L  V  +  G Y CV  N  GS+ S  A + IN
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 64.3 bits (156), Expect = 1e-12
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 14/101 (13%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHR------- 189
           P++ V+P    A  GS V   C            +W  D     +               
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 190 ----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTV 225
               T  LRL N+     G Y+C  SN  G   +    LT+
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 64.3 bits (156), Expect = 1e-12
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 14/101 (13%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHR------- 373
           P++ V+P    A  GS V   C            +W  D     +               
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 374 ----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTV 409
               T  LRL N+     G Y+C  SN  G   +    LT+
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 44  APPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 100
           +   F +    +     G   R    +   P  ++ W+ +G  +       +EH G    
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAE 126
           L +N  + +D   Y   A + + S E
Sbjct: 65  LFINNCQMTDDSEYYVTAGDEKCSTE 90

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 228 APPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
           +   F +    +     G   R    +   P  ++ W+ +G  +       +EH G    
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAE 310
           L +N  + +D   Y   A + + S E
Sbjct: 65  LFINNCQMTDDSEYYVTAGDEKCSTE 90

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 20/112 (17%), Positives = 30/112 (26%), Gaps = 18/112 (16%)

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDM-RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
           GS+ S                      +   G  V    +   +P   + W K+  E   
Sbjct: 1   GSSGS---------SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP 50

Query: 182 DRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
              +     G    L + N    D   Y  TA    G++     L V   P 
Sbjct: 51  STKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 19/108 (17%), Positives = 29/108 (26%), Gaps = 18/108 (16%)

Query: 307 GSAESVAMIRINGHRAPRLVVKPFDM-RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 365
           GS+ S                      +   G  V    +   +P   + W K+  E   
Sbjct: 1   GSSGS---------SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP 50

Query: 366 DRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
              +     G    L + N    D   Y  TA    G++     L V 
Sbjct: 51  STKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVR 94

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
           +   +    +      T + G    + C +  +      W  +G  +   D +     G 
Sbjct: 2   SSGSSGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGR 59

Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSA 309
           +  LV+      D G Y         + 
Sbjct: 60  IHKLVIANALTEDEGDYVFAPDAYNVTL 87

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 70.4 bits (173), Expect = 6e-15
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 4/84 (4%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
           +    +      T + G    + C +  +      W  +G  +   D +     G +  L
Sbjct: 6   SGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGRIHKL 63

Query: 102 VLNGVRESDAGVYNCVAQNSEGSA 125
           V+      D G Y         + 
Sbjct: 64  VIANALTEDEGDYVFAPDAYNVTL 87

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG--- 191
           G    +++    D     G  + + C+       +  W+K+     E    K+ + G   
Sbjct: 4   GSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIH 61

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
            L + N   +D G Y                + V   P
Sbjct: 62  KLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG--- 375
           G    +++    D     G  + + C+       +  W+K+     E    K+ + G   
Sbjct: 4   GSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIH 61

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            L + N   +D G Y                + V 
Sbjct: 62  KLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVI 94

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 71.6 bits (175), Expect = 3e-15
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 14/104 (13%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVTYEHDG 98
             +F+ RP     + G +   +  V G  L   P + WF       S     H+      
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 99  --------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
                   F L +   + +  G Y C     +    S   + ++
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 71.6 bits (175), Expect = 3e-15
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 14/104 (13%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVTYEHDG 282
             +F+ RP     + G +   +  V G  L   P + WF       S     H+      
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 283 --------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
                   F L +   + +  G Y C     +    S   + ++
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 69.6 bits (170), Expect = 1e-14
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNHKIHR----- 189
               V++P D     G S+    +  G  L   P + W K +   +  +  +  +     
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 190 -------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
                     L + +  P  +G YRC  S     D +   LTV 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 69.6 bits (170), Expect = 1e-14
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNHKIHR----- 373
               V++P D     G S+    +  G  L   P + W K +   +  +  +  +     
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 374 -------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                     L + +  P  +G YRC  S     D +   LTV 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 74.8 bits (183), Expect = 4e-15
 Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 44/205 (21%)

Query: 145 PFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDE---------------------AEFVED 182
           P  +    G SV + C P G      + W   +                           
Sbjct: 7   PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66

Query: 183 RNH--KIHRTGSLRLYNIGPQDSGLYRCTA-SNLLGEDVAEGYLTVTGAP---PIFIQRP 236
           R+   ++   G L L      D   Y C   +   G   A   L V   P    +   + 
Sbjct: 67  RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKG 126

Query: 237 VSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHV----------TYEHDGF-- 283
             +     +    TC    G+P P++TW+ +G  L+    +            E  G   
Sbjct: 127 TLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLS 186

Query: 284 ---VLVLNGVRESDAGVYNCVAQNS 305
               L L   ++     ++C A  S
Sbjct: 187 LTSTLYLRLRKDDRDASFHCAAHYS 211

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 69.5 bits (169), Expect = 3e-13
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 21/133 (15%)

Query: 10  LVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPP----IFIQRPVSTTYSTGSTSR 64
           LV++  Q      Y C V    AG       + V A P    +   +   +     +   
Sbjct: 79  LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEI 138

Query: 65  ITCLVE-GHPLPQMTWFHDGNSLDSDDHV----------TYEHDGF-----VLVLNGVRE 108
            TC    G+P P++TW+ +G  L+    +            E  G       L L   ++
Sbjct: 139 ATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKD 198

Query: 109 SDAGVYNCVAQNS 121
                ++C A  S
Sbjct: 199 DRDASFHCAAHYS 211

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 50/230 (21%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG 98
           V ++ PP      V      G +  + C   G H    + WF    S       + E  G
Sbjct: 2   VRLSVPP-----LVEVMR--GKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQG 54

Query: 99  ----------------------FVLVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRING 135
                                   LVL   +  D   Y C V   + G+AE+ A + +  
Sbjct: 55  SELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA 114

Query: 136 --HRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEF------------- 179
                     K         +     C   +G P P+I+W ++                 
Sbjct: 115 KPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMT 174

Query: 180 ---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
              V + +  +  T +L L          + C A   L E       + T
Sbjct: 175 SRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPT 224

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 37/221 (16%), Positives = 60/221 (27%), Gaps = 43/221 (19%)

Query: 233 IQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG--------- 282
           +  P       G +  + C   G H    + WF    S       + E  G         
Sbjct: 4   LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHD 63

Query: 283 -------------FVLVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRING--HRAPRLV 326
                          LVL   +  D   Y C V   + G+AE+ A + +           
Sbjct: 64  TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSP 123

Query: 327 VKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEF----------------VEDRNH 369
            K         +     C   +G P P+I+W ++                    V + + 
Sbjct: 124 NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASG 183

Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            +  T +L L          + C A   L E       + T
Sbjct: 184 LLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPT 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 8e-15
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIHRTGS 192
            AP ++  P D+    G   E+ C+    P+  + W       +          +   G+
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
           L   ++   D+G+Y C  +N+ G   A  YL V+ A  
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 2e-13
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIHRTGS 376
            AP ++  P D+    G   E+ C+    P+  + W       +          +   G+
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
           L   ++   D+G+Y C  +N+ G   A  YL V+   +   
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 217 DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH- 275
           +V +     +   P  +  P     S G  + + C     P+  + W     ++ S    
Sbjct: 342 EVDQASFQCS--APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASR 397

Query: 276 ---VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
              ++  +DG  L  + V  SD GVY C+  N  G++ + A + ++ 
Sbjct: 398 HPRISVLNDG-TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFV 100
            P  +  P     S G  + + C     P+  + W     ++ S       ++  +DG  
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG-T 408

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           L  + V  SD GVY C+  N  G++ + A + ++ 
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
           L  S V     G Y+C+  N AG      ++ V+   
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A* Length = 104

 Score = 69.7 bits (170), Expect = 1e-14
 Identities = 24/62 (38%), Positives = 27/62 (43%)

Query: 665 FHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVG 724
              KYRTI G CNN + P  GAS   F R L   YE+GFS P          G       
Sbjct: 3   EQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALAR 62

Query: 725 AI 726
           A+
Sbjct: 63  AV 64

>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A* Length = 104

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 18/38 (47%), Positives = 20/38 (52%)

Query: 865 EVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHA 902
            V       PT  +TPD   + M MQWGQ LDHDLD  
Sbjct: 63  AVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFT 100

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFV- 100
           +  +  ++   TT   G    + C V       + WF +G  +            +G   
Sbjct: 6   SGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64

Query: 101 -LVLNGVRESDAGVYNCVAQNSEGSAE 126
            L++ G  ++DA  Y+ +    + SA+
Sbjct: 65  ILIIEGATKADAAEYSVMTTGGQSSAK 91

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFV- 284
           +  +  ++   TT   G    + C V       + WF +G  +            +G   
Sbjct: 6   SGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64

Query: 285 -LVLNGVRESDAGVYNCVAQNSEGSAE 310
            L++ G  ++DA  Y+ +    + SA+
Sbjct: 65  ILIIEGATKADAAEYSVMTTGGQSSAK 91

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 20/114 (17%)

Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
           GS+ S             +  +  D  A  G  VE+ C+        + W K+  E +  
Sbjct: 1   GSSGS---------SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPG 50

Query: 183 RNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG-APP 230
              +       +   L +      D+  Y            +   L+V   + P
Sbjct: 51  PKSRYRIRVEGKKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLKSGP 100

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 24/121 (19%)

Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
           GS+ S             +  +  D  A  G  VE+ C+        + W K+  E +  
Sbjct: 1   GSSGS---------SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPG 50

Query: 367 RNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHT 421
              +       +   L +      D+  Y            +   L+V        +  +
Sbjct: 51  PKSRYRIRVEGKKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVD-----LKSGPS 101

Query: 422 S 422
           S
Sbjct: 102 S 102

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 72.8 bits (178), Expect = 2e-14
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 42/204 (20%)

Query: 149 RAPAGSSVEIPC----KPDGEPLPRISWSKDE-------------------------AEF 179
            A  G   ++PC        E +  + W                                
Sbjct: 15  LAMVGEDADLPCHLFPTMSAETM-ELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI 73

Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
           + D         +LR++N+   DSG Y C   +  G+   +  + +  A        V  
Sbjct: 74  LRDGIT--AGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAAL-GSDLHVDV 128

Query: 240 TYSTGSTSRITCLVEG-HPLPQMTWF-HDGNSL-DSDDHVTYEHDGFVLV---LNGVRES 293
                    + C   G +P PQ+ W  + G ++   +  V  +  G   V   +  +R S
Sbjct: 129 KGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI-MRGS 187

Query: 294 DAGVYNCVAQNSEGSAESVAMIRI 317
                +C  ++S    E  A I I
Sbjct: 188 SGEGVSCTIRSSLLGLEKTASISI 211

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 65.9 bits (160), Expect = 4e-12
 Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 18/173 (10%)

Query: 76  QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           Q   +    S+  D     +     L ++ V  SD+G Y C  Q+ +   +++  +++  
Sbjct: 63  QSAPYRGRTSILRDGITAGK---AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA 119

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
             +   V    D++      + + C+  G  P P+I WS ++ E +      +   G   
Sbjct: 120 LGSDLHV----DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGV-G 174

Query: 195 LYNI------GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY 241
           LY +               CT  + L        +++      F +      +
Sbjct: 175 LYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI---ADPFFRSAQHHHH 224

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 65.5 bits (159), Expect = 5e-12
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
           Q   +    S+  D     +     L ++ V  SD+G Y C  Q+ +   +++  +++  
Sbjct: 63  QSAPYRGRTSILRDGITAGK---AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA 119

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
             +   V    D++      + + C+  G  P P+I WS ++ E +      +   G   
Sbjct: 120 LGSDLHV----DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGV-G 174

Query: 379 LYNI------GPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           LY +               CT  + L        +++ 
Sbjct: 175 LYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA 212

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 63.6 bits (154), Expect = 3e-11
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L I  V     G+Y C   +  G +     V +    +     V           + C  
Sbjct: 85  LRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRS 142

Query: 70  EG-HPLPQMTWF-HDGNSL-DSDDHVTYEHDGFVLV---LNGVRESDAGVYNCVAQNSEG 123
            G +P PQ+ W  + G ++   +  V  +  G   V   +  +R S     +C  ++S  
Sbjct: 143 TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI-MRGSSGEGVSCTIRSSLL 201

Query: 124 SAESVAMIRI 133
             E  A I I
Sbjct: 202 GLEKTASISI 211

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 3e-14
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 136 HRAPRLV-VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KIHRTG 191
            R  R+   K   +    G +V+  C+ DG+P P I W       V  +++    +   G
Sbjct: 382 CRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG 441

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
           +L +     QD+G Y C A+N  G D    +L V 
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 3e-14
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 320 HRAPRLV-VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KIHRTG 375
            R  R+   K   +    G +V+  C+ DG+P P I W       V  +++    +   G
Sbjct: 382 CRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG 441

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           +L +     QD+G Y C A+N  G D    +L V 
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFV 100
              I  ++        G T +  C  +G P P + W      L    S+  +T   DG  
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-T 442

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
           L +   +  D G Y C+A N+ G+    A + + 
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFV 284
              I  ++        G T +  C  +G P P + W      L    S+  +T   DG  
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-T 442

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           L +   +  D G Y C+A N+ G+    A + + 
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
           L +   Q +  G Y C+A N  G      H+ V +
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 144 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTGSLRLYNIGPQ 201
           K     A  G ++ I C    + + ++  S    + +   ++     R G L    +  +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311

Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGS 245
           D G+Y C A      +     L V           ++      S
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWS 355

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTGSLRLYNIGPQ 385
           K     A  G ++ I C    + + ++  S    + +   ++     R G L    +  +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311

Query: 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPS 431
           D G+Y C A      +     L V   N      H +   +A   S
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVY--NFTLHGHHDTLNAAADPWS 355

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 16/120 (13%)

Query: 51  RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRE 108
           +  +     G T  I C  +   + ++        +     +      +G  L    V+ 
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310

Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
            D GVY C A     +      +++                   G    +    D    P
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNF-------------TLHGHHDTLNAAADPWSHP 357

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 16/120 (13%)

Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRE 292
           +  +     G T  I C  +   + ++        +     +      +G  L    V+ 
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310

Query: 293 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
            D GVY C A     +      +++                   G    +    D    P
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNF-------------TLHGHHDTLNAAADPWSHP 357

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 10/57 (17%), Positives = 18/57 (31%)

Query: 7   STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
           + +L    VQ E GG Y+C A          + + V    +          +   + 
Sbjct: 300 NGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSH 356

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 16/185 (8%)

Query: 58  STGSTSRITCLVEGHPLPQMTWFH---DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGV 113
               + +I C  +      +T      +    +    + + +      V++ +  + AG 
Sbjct: 21  PLDGSVKIQC--QAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR 78

Query: 114 YNCVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI 170
           Y C  +           + +     +  P L      +    G ++ + C     P  R 
Sbjct: 79  YQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRF 137

Query: 171 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-----LTV 225
           S +K E E    ++       +  L  +    SG+YRC         +         L V
Sbjct: 138 SLAK-EGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV 196

Query: 226 TGAPP 230
           T +  
Sbjct: 197 TDSIH 201

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 65.3 bits (159), Expect = 5e-12
 Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 19/192 (9%)

Query: 242 STGSTSRITCLVEGHPLPQMTWFH---DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGV 297
               + +I C  +      +T      +    +    + + +      V++ +  + AG 
Sbjct: 21  PLDGSVKIQC--QAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR 78

Query: 298 YNCVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI 354
           Y C  +           + +     +  P L      +    G ++ + C     P  R 
Sbjct: 79  YQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRF 137

Query: 355 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-----LTV 409
           S +K E E    ++       +  L  +    SG+YRC         +         L V
Sbjct: 138 SLAK-EGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV 196

Query: 410 TGENSVEPAPHT 421
           T         +T
Sbjct: 197 TDS---IHQDYT 205

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 56.0 bits (135), Expect = 8e-09
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 6/124 (4%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGV----YRGDLHVTVNAPPIFIQRPVSTTYSTG 60
            +  E VI  +     GRY C               +L VT      F+          G
Sbjct: 61  ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPG 120

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
               +TC     P  + +   +G                   L  V  + +G+Y C    
Sbjct: 121 ENISLTCSSAHIPFDRFSLAKEGELSLP--QHQSGEHPANFSLGPVDLNVSGIYRCYGWY 178

Query: 121 SEGS 124
           +   
Sbjct: 179 NRSP 182

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 62.1 bits (150), Expect = 1e-11
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 12/104 (11%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGF--- 99
             + +        S G    + C             W +  +       V  +       
Sbjct: 8   YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67

Query: 100 -------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 136
                   L ++GV  SD G+Y C A +   + ++   +R++  
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 62.1 bits (150), Expect = 1e-11
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 12/104 (11%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGF--- 283
             + +        S G    + C             W +  +       V  +       
Sbjct: 8   YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67

Query: 284 -------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 320
                   L ++GV  SD G+Y C A +   + ++   +R++  
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 60.5 bits (146), Expect = 3e-11
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 13/108 (12%)

Query: 145 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD-------------EAEFVEDRNHKIHRTG 191
              +    G  + + C    E    I ++ +                  +  +       
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
           +L +  +   D GLY C AS+ L       ++ V   P +     + +
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 122

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 13/94 (13%)

Query: 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD-------------EAEFVEDRNHKIHRTG 375
              +    G  + + C    E    I ++ +                  +  +       
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           +L +  +   D GLY C AS+ L       ++ V
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ 50
           ++ ++  + L I GV R   G Y+C A +     +    V V+  P F+ 
Sbjct: 67  SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP-FVA 115

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 66.4 bits (161), Expect = 1e-11
 Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 19/187 (10%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
           R P   V    + +  G SV + C   + E    + W   +       +        L L
Sbjct: 5   RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE- 254
            ++   DSG Y C  +   G      +L V   PP   + P  + +     S + C    
Sbjct: 65  RSVQLHDSGNYSCYRA---GRPAGTVHLLV-DVPP---EEPQLSCFRKSPLSNVVCEWGP 117

Query: 255 ----GHPLPQMTWFHDGNSLDSDDHVT----YEHDGFVLVLNGVRESDAGVY--NCVAQN 304
                     +       +  ++D        +          V E D+  Y  +    +
Sbjct: 118 RSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVAS 177

Query: 305 SEGSAES 311
           S GS  S
Sbjct: 178 SVGSKFS 184

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 57.6 bits (138), Expect = 7e-09
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
           R P   V    + +  G SV + C   + E    + W   +       +        L L
Sbjct: 5   RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            ++   DSG Y C  +   G      +L V
Sbjct: 65  RSVQLHDSGNYSCYRA---GRPAGTVHLLV 91

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 2/83 (2%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITC-LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 98
           +     P         T   G +  +TC  VE      + W     +        +   G
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-GSHPSRWAGMG 59

Query: 99  FVLVLNGVRESDAGVYNCVAQNS 121
             L+L  V+  D+G Y+C     
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGR 82

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 227 GAPPIFIQRPVSTTYSTGSTSRITC-LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
              P         T   G +  +TC  VE      + W     +        +   G  L
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-GSHPSRWAGMGRRL 62

Query: 286 VLNGVRESDAGVYNCVAQNS 305
           +L  V+  D+G Y+C     
Sbjct: 63  LLRSVQLHDSGNYSCYRAGR 82

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 11/173 (6%)

Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD 202
           ++P       G S+ + C  +     R      E     +   +  R  + +L +I  + 
Sbjct: 7   LQPRVAFVERGGSLWLNCSTNCPRPERGGL---ETSLRRNGTQRGLRWLARQLVDI-REP 62

Query: 203 SGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQM 261
                C          A G +     P      P+      G    ++C V G  P   +
Sbjct: 63  ETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASL 122

Query: 262 T--WFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGS 308
           T         L                    +   RE     ++C A+     
Sbjct: 123 TLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP 175

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 53.2 bits (127), Expect = 6e-08
 Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 9/127 (7%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ-RPVSTTYSTGSTSR 64
                 +  + RE   +  C         +    +     P  ++  P+      G    
Sbjct: 50  RWLARQLVDI-REPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFT 108

Query: 65  ITCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCV 117
           ++C V G  P   +T         L                    +   RE     ++C 
Sbjct: 109 LSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCR 168

Query: 118 AQNSEGS 124
           A+     
Sbjct: 169 AELDLRP 175

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 67.0 bits (163), Expect = 2e-11
 Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 18/197 (9%)

Query: 236 PVSTTYSTGSTSRITCLVE-------GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
           P S      S     C+++             + W  +  ++  + +         +   
Sbjct: 10  PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC--KP 346
            +   +     C         ++V  I I     P    KP ++        ++ C    
Sbjct: 70  DIASLNIQ-LTCNILTFGQLEQNVYGITIISGLPPE---KPKNLSCIVNEGKKMRCEWDG 125

Query: 347 DGEPLP----RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
             E        +       +F + +  +   T     Y+     +      A N LG+  
Sbjct: 126 GRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT 185

Query: 403 AEGYLTVTGENSVEPAP 419
           ++ ++       V+P P
Sbjct: 186 SD-HINFDPVYKVKPNP 201

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 66.2 bits (161), Expect = 3e-11
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 28/231 (12%)

Query: 142 VVKPFDMRAPAGSSVEIPC-------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
            + P        S+    C                I W  +     +++   I+RT S  
Sbjct: 7   YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV 66

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT-GAPPIFIQRPVSTTYSTGSTSRITC-- 251
            +      +    C        +     +T+  G PP   ++P + +       ++ C  
Sbjct: 67  TFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNEGKKMRCEW 123

Query: 252 --LVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEG 307
               E H     T   +  +    D            +  + V   +       A+N+ G
Sbjct: 124 DGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN-IEVWVEAENALG 182

Query: 308 SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
              S  +     ++     VKP     P   ++ +    +   + +++W+ 
Sbjct: 183 KVTSDHINFDPVYK-----VKP---NPP--HNLSVINSEELSSILKLTWTN 223

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 64.6 bits (157), Expect = 8e-11
 Identities = 45/427 (10%), Positives = 101/427 (23%), Gaps = 66/427 (15%)

Query: 52  PVSTTYSTGSTSRITCLVE-------GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
           P S      S     C+++             + W  +  ++  + +         +   
Sbjct: 10  PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC--KP 162
            +   +     C         ++V  I I     P    KP ++        ++ C    
Sbjct: 70  DIASLNIQ-LTCNILTFGQLEQNVYGITIISGLPPE---KPKNLSCIVNEGKKMRCEWDG 125

Query: 163 DGEPLP----RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE-- 216
             E        +       +F + +  +   T     Y+     +      A N LG+  
Sbjct: 126 GRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT 185

Query: 217 -DVAEGYLTVTGAP-PIFIQRPVSTTYSTGS-----------TSRIT-CLVEGHPLPQMT 262
            D           P P      +++   +             +  I    ++       T
Sbjct: 186 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST 245

Query: 263 WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC--VAQNSEG----SAESVAMIR 316
           W        +    ++                   Y         +G    S  S     
Sbjct: 246 WSQIPPEDTASTRSSFTVQDL---------KPFTEYVFRIRCMKEDGKGYWSDWSEEASG 296

Query: 317 INGHRAP----RLVVKPFDMRAPAGSSVEIPCKPDGEPLP-------RISWSKDEAEFVE 365
           I     P        K          +V++  K               ++ ++ ++  ++
Sbjct: 297 ITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-LQ 355

Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREP 425
           +      +            D  L   T  NL+G+      LT+   +     P    + 
Sbjct: 356 NYTVNATKLTVNL-----TNDRYLATLTVRNLVGK-SDAAVLTIPACDFQATHPVMDLKA 409

Query: 426 SASKPSV 432
                 +
Sbjct: 410 FPKDNML 416

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 7/92 (7%)

Query: 326 VVKPFDMRAPAGSSVEIPC-------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
            + P        S+    C                I W  +     +++   I+RT S  
Sbjct: 7   YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV 66

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            +      +    C        +     +T+ 
Sbjct: 67  TFTDIASLNIQLTCNILTFGQLEQNVYGITII 98

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 39/238 (16%), Positives = 70/238 (29%), Gaps = 23/238 (9%)

Query: 58  STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVY 114
            +  T  + C  +           +G   D+   +   HDG       +  + +  AG Y
Sbjct: 19  KSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTY 77

Query: 115 NCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
            C    +    +       + ++    +  P L  +P      AG SV + C        
Sbjct: 78  RCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPT-VLAGESVTLSCSSR-SSYD 135

Query: 169 RISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYRCTASNLLGEDVAEGY---- 222
               S++        +      G+ +  + +GP    G YRC  S               
Sbjct: 136 MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPL 195

Query: 223 -LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG----HPLPQMTWFHDGNSLDSDDH 275
            ++VTG P      P   +  TG+   +    E          +     G+S     H
Sbjct: 196 LVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLDLVPRGSSSHHHHH 253

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 21/203 (10%)

Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVY 298
            +  T  + C  +           +G   D+   +   HDG       +  + +  AG Y
Sbjct: 19  KSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTY 77

Query: 299 NCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
            C    +    +       + ++    +  P L  +P      AG SV + C        
Sbjct: 78  RCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPT-VLAGESVTLSCSSR-SSYD 135

Query: 353 RISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYRCTASNLLGEDVAEGY---- 406
               S++        +      G+ +  + +GP    G YRC  S               
Sbjct: 136 MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPL 195

Query: 407 -LTVTGENSVEPAPHTSREPSAS 428
            ++VTG  +   +  +  EPS+ 
Sbjct: 196 LVSVTG--NPSNSWPSPTEPSSE 216

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 26/196 (13%), Positives = 50/196 (25%), Gaps = 25/196 (12%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG-------DLHVTVNAPPIFIQRPV 53
             D  S     I  + ++  G Y C        Y+        D+ +T       +    
Sbjct: 55  HHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP 114

Query: 54  STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDG-FVLVLNGVRESDA 111
             T   G +  ++C         M     +G + +       + +G F         +  
Sbjct: 115 GPTVLAGESVTLSC--SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHG 172

Query: 112 GVYNCVAQN-------SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC---- 160
           G Y C           S  S   +  +  N   +     +P    +  G+   +      
Sbjct: 173 GTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEP---SSETGNPRHLHAAAEQ 229

Query: 161 KPDGEPLPRISWSKDE 176
           K   E    +      
Sbjct: 230 KLISEEDLNLDLVPRG 245

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 62.2 bits (150), Expect = 3e-11
 Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 38/177 (21%)

Query: 59  TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
           +G++  +TC ++      + W  +G  L         HD  +++ +     D+G Y C  
Sbjct: 13  SGTSVELTCPLD--SDENLKWEKNGQELPQK------HDKHLVLQDFSEVEDSGYYVCYT 64

Query: 119 QNSEGSAESVAMIRI----------------------NGHRAPRLVVKPFDMRA-PAGSS 155
             S  +       R+                                    +       S
Sbjct: 65  PASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS 124

Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
           V + C   G     I W KD +        K     +  L N      G Y+C  + 
Sbjct: 125 VLLTC---GLTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGAK 174

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 62.2 bits (150), Expect = 3e-11
 Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 38/177 (21%)

Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
           +G++  +TC ++      + W  +G  L         HD  +++ +     D+G Y C  
Sbjct: 13  SGTSVELTCPLD--SDENLKWEKNGQELPQK------HDKHLVLQDFSEVEDSGYYVCYT 64

Query: 303 QNSEGSAESVAMIRI----------------------NGHRAPRLVVKPFDMRA-PAGSS 339
             S  +       R+                                    +       S
Sbjct: 65  PASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS 124

Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
           V + C   G     I W KD +        K     +  L N      G Y+C  + 
Sbjct: 125 VLLTC---GLTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGAK 174

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 61.0 bits (147), Expect = 8e-11
 Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 41/184 (22%)

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-QDSGLYRC 208
           + +G+SVE+ C  D +    + W K+  E +  ++ K      L L +    +DSG Y C
Sbjct: 11  SISGTSVELTCPLDSDE--NLKWEKNGQE-LPQKHDK-----HLVLQDFSEVEDSGYYVC 62

Query: 209 TASNLLG-----------------------EDVAEGYLTVTGAPPIFIQRPVS-TTYSTG 244
                                         +D  +      G+     +  V        
Sbjct: 63  YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122

Query: 245 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304
            +  +TC   G     + W  DG+ +                L    +   G Y C    
Sbjct: 123 GSVLLTC---GLTDKTIKWLKDGSIISP-----LNATKNTWNLGNNAKDPRGTYQCQGAK 174

Query: 305 SEGS 308
              +
Sbjct: 175 ETSN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 19/145 (13%), Positives = 29/145 (20%), Gaps = 34/145 (23%)

Query: 6   SSTELVISGVQR-EHGGRYSCVAGNPAGVYRGDLHVTV---------------------- 42
               LV+      E  G Y C            L   V                      
Sbjct: 42  HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAK 101

Query: 43  --NAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
              +     +  V         +  +TC   G     + W  DG+ +             
Sbjct: 102 KDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISP-----LNATKN 153

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGS 124
              L    +   G Y C       +
Sbjct: 154 TWNLGNNAKDPRGTYQCQGAKETSN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 16/131 (12%)

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-QDSGLYRC 392
           + +G+SVE+ C  D +    + W K+  E +  ++ K      L L +    +DSG Y C
Sbjct: 11  SISGTSVELTCPLDSDE--NLKWEKNGQE-LPQKHDK-----HLVLQDFSEVEDSGYYVC 62

Query: 393 TASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDT-----IHMAVKLASRE 447
                        YL     ++ +     +++  A K     D          V++    
Sbjct: 63  YTPA--SNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSR 120

Query: 448 VDAAVNATINS 458
            D +V  T   
Sbjct: 121 GDGSVLLTCGL 131

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 37/219 (16%), Positives = 61/219 (27%), Gaps = 18/219 (8%)

Query: 58  STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 115
                  I C  +G+        H +G+    D     E  +     +  +    AG Y+
Sbjct: 19  PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 76

Query: 116 CVAQNSEGSAES---VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
           C+ +  E  +E    + ++    +  P L V P      +G  V   C+ D         
Sbjct: 77  CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLL 134

Query: 173 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE-----DVAEGYLTVTG 227
            K+       +           L  +     G YRC  S          +  +  L VTG
Sbjct: 135 LKEG-RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVK--LLVTG 191

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTWFH 265
                   P   T+   +        E         W H
Sbjct: 192 DIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALWDH 230

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 10/160 (6%)

Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 299
                  I C  +G+        H +G+    D     E  +     +  +    AG Y+
Sbjct: 19  PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 76

Query: 300 CVAQNSEGSAES---VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
           C+ +  E  +E    + ++    +  P L V P      +G  V   C+ D         
Sbjct: 77  CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLL 134

Query: 357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
            K+       +           L  +     G YRC  S 
Sbjct: 135 LKEG-RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY 173

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 28/180 (15%), Positives = 47/180 (26%), Gaps = 12/180 (6%)

Query: 3   DRRSSTELVISGVQREHGGRYSCVAGNPAGV----YRGDLHVTVNAPPIFIQRPVSTTYS 58
           +R +  +  I  +     G+YSC+              DL VT       +         
Sbjct: 55  ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 114

Query: 59  TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
           +G      C ++           +G S             F   L  V  +  G Y C  
Sbjct: 115 SGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEF--PLGPVTTAHRGTYRCFG 171

Query: 119 QNS--EGSAESVA-MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
             +    S  S    + + G       + P D   PA +        +     +     D
Sbjct: 172 SYNNHAWSFPSEPVKLLVTG-DIENTSLAPEDPTFPADTWGTYLLTTETGL-QKDHALWD 229

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 61.4 bits (149), Expect = 9e-11
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%)

Query: 58  STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 115
           S G++  I C  +G    +      + +    D     E  +     +  + E  AG Y 
Sbjct: 17  SWGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYR 74

Query: 116 CVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
           C  ++  G S  S  + ++    +  P L   P  +   +G SV + C+    P+     
Sbjct: 75  CYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLCQSR-SPMDTFLL 132

Query: 173 SKD-EAEFVEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTASN 212
            K+  A  +     +         + + P      G YRC +S+
Sbjct: 133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSH 176

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 61.4 bits (149), Expect = 9e-11
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%)

Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 299
           S G++  I C  +G    +      + +    D     E  +     +  + E  AG Y 
Sbjct: 17  SWGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYR 74

Query: 300 CVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
           C  ++  G S  S  + ++    +  P L   P  +   +G SV + C+    P+     
Sbjct: 75  CYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLCQSR-SPMDTFLL 132

Query: 357 SKD-EAEFVEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTASN 396
            K+  A  +     +         + + P      G YRC +S+
Sbjct: 133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSH 176

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 8/124 (6%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRG----DLHVTVNAPPIFIQRPVSTTYSTG 60
           ++     I  +  ++ GRY C   +P G  +     +L +T       +    S   ++G
Sbjct: 55  KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSG 114

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCV 117
            +  + C     P+       +  +       +            ++ V     G Y C 
Sbjct: 115 KSVTLLCQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173

Query: 118 AQNS 121
           + + 
Sbjct: 174 SSHG 177

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 22/169 (13%)

Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--TGSLRLYNIGPQDSGLYRC 208
             G+SV I C+            K+E+    DR + +         + ++    +G YRC
Sbjct: 17  SWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRC 75

Query: 209 TA---------SNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
                      S+ L   +   Y     + P     P S   ++G +  + C     P+ 
Sbjct: 76  YYRSPVGWSQPSDPLELVMTGAY-----SKPTLSALP-SPLVTSGKSVTLLCQSR-SPMD 128

Query: 260 QMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNS 305
                 +  +       +            ++ V     G Y C + + 
Sbjct: 129 TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHG 177

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 14/169 (8%)

Query: 54  STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDA 111
            +  S G++  I C  +G    Q      +G+    D     E  +     +  + E  A
Sbjct: 13  GSVISRGNSVTIRC--QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHA 70

Query: 112 GVYNCVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
           G Y C   +  G S  S  + ++    +  P L   P  +   +G +V + C        
Sbjct: 71  GRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPV-VTSGENVTLQCGSR-LRFD 128

Query: 169 RISWSKD-EAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASN 212
           R   +++ + +     + ++  +G       +  + P    + RC  S 
Sbjct: 129 RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSR 177

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 14/169 (8%)

Query: 238 STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDA 295
            +  S G++  I C  +G    Q      +G+    D     E  +     +  + E  A
Sbjct: 13  GSVISRGNSVTIRC--QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHA 70

Query: 296 GVYNCVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
           G Y C   +  G S  S  + ++    +  P L   P  +   +G +V + C        
Sbjct: 71  GRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPV-VTSGENVTLQCGSR-LRFD 128

Query: 353 RISWSKD-EAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASN 396
           R   +++ + +     + ++  +G       +  + P    + RC  S 
Sbjct: 129 RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSR 177

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRG----DLHVTVNAPPIFIQRPVSTTYSTG 60
           ++     I  +   H GRY C   +PAG        +L VT       +    S   ++G
Sbjct: 55  KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSG 114

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGF--VLVLNGVRESDAGVYNC 116
               + C              +G+   S   D        F  +  +  V  S   +  C
Sbjct: 115 ENVTLQCGSRLRFDR-FILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC 173

Query: 117 VAQNSEGS 124
                   
Sbjct: 174 YGSRRHIL 181

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 13/168 (7%)

Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRC 208
             G+SV I C+            K+ +    D  + +         + ++    +G YRC
Sbjct: 17  SRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRC 75

Query: 209 TASNLLGE----DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 264
              +  G     D  E  +T     P     P S   ++G    + C             
Sbjct: 76  YYYSPAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRFDR-FILT 133

Query: 265 HDGNSLDSD--DHVTYEHDGF--VLVLNGVRESDAGVYNCVAQNSEGS 308
            +G+   S   D        F  +  +  V  S   +  C        
Sbjct: 134 EEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 60.6 bits (146), Expect = 2e-10
 Identities = 26/210 (12%), Positives = 49/210 (23%), Gaps = 40/210 (19%)

Query: 145 PFDMRAPAGSSVEIPCK-------PDGEPLPRISWSKDEAEFVEDRN------------- 184
              +    G  V +PC            P   + W +D                      
Sbjct: 7   QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPE 66

Query: 185 ---------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE--DVAEGYLTVT-----GA 228
                        +  SL + +   +D+G Y               +  L +        
Sbjct: 67  TQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEK 126

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
           P I    P+ +   T  +  +    E  P    +W  +  S    +          L L 
Sbjct: 127 PDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSS----ELTLT 182

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
              E       C  +       +   +++N
Sbjct: 183 PRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 59.1 bits (142), Expect = 6e-10
 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 12/141 (8%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGV----YRGDLHVTVNAPPIFIQRPVSTTY 57
           D ++ +  L I   + E  G Y         V     +  L++ V A             
Sbjct: 76  DVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPL 135

Query: 58  STGSTSRITCLV----EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
            +G  +R++C +    E  P    +W  +  S    +          L L    E     
Sbjct: 136 ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSS----ELTLTPRPEDHGTN 191

Query: 114 YNCVAQNSEGSAESVAMIRIN 134
             C  +       +   +++N
Sbjct: 192 LTCQMKRQGAQVTTERTVQLN 212

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 30/214 (14%), Positives = 51/214 (23%), Gaps = 39/214 (18%)

Query: 233 IQRPVSTTYSTGSTSRITCLVE-------GHPLPQMTWFHDGNSLDSDDHVTYEHDGFV- 284
           +Q   S T   G    + C            P   + WF DG      + V   +     
Sbjct: 4   LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRV 63

Query: 285 --------------------LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
                               L +   R  D G Y    +       S    ++N      
Sbjct: 64  KPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL 123

Query: 325 LVVKPFDM--RAPAGSSVEIPCKP----DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
           +            +G    + C      +  P    SW+ +    +   + +  R+  L 
Sbjct: 124 IEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA---LSPLDPETTRSSELT 180

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEG--YLTVT 410
           L            C       +   E    L V+
Sbjct: 181 LTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 17/120 (14%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----------- 371
             L      +    G ++ + C         + W       +    + +           
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 372 -HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKP 430
                S+ + N+  QD G+Y+C   +       E  + V             R PS  +P
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVL----ATMKGEFCRYPSHWRP 116

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 15/112 (13%), Positives = 30/112 (26%), Gaps = 13/112 (11%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----------- 187
             L      +    G ++ + C         + W       +    + +           
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 188 -HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS 238
                S+ + N+  QD G+Y+C   +       E  + V         R  S
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVLATMKGEFCRYPS 112

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDH----------VTY 94
                   + T   G T  + C+        + W    G ++  +++          + +
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 95  EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 128
             +   + +  V   D GVY C+  +   S + V
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEV 95

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDH----------VTY 278
                   + T   G T  + C+        + W    G ++  +++          + +
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
             +   + +  V   D GVY C+  +   S + V
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEV 95

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 45/316 (14%), Positives = 94/316 (29%), Gaps = 45/316 (14%)

Query: 49  IQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWF----------HDGNSLDSDDHVTYEHD 97
           IQ   S + + G ++ + C V    P+  + WF          ++          T    
Sbjct: 7   IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSES 66

Query: 98  G------FVLVLNGVRESDAGVYNCVAQNSEGSA-----ESVAMIRINGHRAPRLVVKPF 146
                  F + ++ +  +DAG Y CV              +   + +    +  +V  P 
Sbjct: 67  TKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA 126

Query: 147 DMRAPAGSSVEIPCK-PDGEPLP-RISWSKDEAE--------FVEDRNHKIHRTGSLRLY 196
             RA    +V   C+     P    + W K+  E             +       + ++ 
Sbjct: 127 A-RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV 185

Query: 197 NIGPQDSGLYRCTASN--LLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
                      C  ++  L G+ +                          +   +TC V 
Sbjct: 186 LTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR 245

Query: 255 G-HPLP-QMTWFHDGNSLDSDDHVTYEHDG---F----VLVLNGVRESDAGVYNC-VAQN 304
             +P   Q+TW  +GN   ++   T   +    +     L++N     D     C V  +
Sbjct: 246 KFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD 305

Query: 305 SEGSAESVAMIRINGH 320
            + +      ++++  
Sbjct: 306 GQPAVSKSHDLKVSTR 321

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 57.3 bits (138), Expect = 8e-09
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 22/195 (11%)

Query: 5   RSSTE--LVISGVQREHGGRYSCV---AGNPAGVYRGDLHVTVN---APPIFIQRPVSTT 56
           R + +  + IS +     G Y CV    G+P   ++      ++    P   +    +  
Sbjct: 69  RENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAAR 128

Query: 57  YSTGSTSRITCLVEG--HPLPQMTWFHDGNSLDSDDHVTYEHDG--------FVLVLNGV 106
            +   T   TC   G       + WF +GN L SD     +  G            +   
Sbjct: 129 ATPQHTVSFTCESHGFSPRDITLKWFKNGNEL-SDFQTNVDPVGESVSYSIHSTAKVVLT 187

Query: 107 RESDAGVYNCVAQNSEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDG 164
           RE       C   +     +       ++        ++       A + V + C+    
Sbjct: 188 REDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKF 247

Query: 165 EPLP-RISWSKDEAE 178
            P   +++W ++   
Sbjct: 248 YPQRLQLTWLENGNV 262

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEA-------------EFVEDRNH 185
           + KP  +    G    +  K +G+ L   P I W K +              +   +   
Sbjct: 16  LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS 75

Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
            ++ T  L +  +   D G YR         D     + V   
Sbjct: 76  NVY-TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 17/100 (17%)

Query: 326 VVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEA-------------EFVEDRNH 369
           + KP  +    G    +  K +G+ L   P I W K +              +   +   
Sbjct: 16  LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS 75

Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            ++ T  L +  +   D G YR         D     + V
Sbjct: 76  NVY-TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.0 bits (121), Expect = 6e-08
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 17/120 (14%)

Query: 219 AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDS 272
           + G         +F+++P S +  TG  + +   V G  L   P + WF          S
Sbjct: 2   SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61

Query: 273 DDHVTYEHDG--------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
               +++             L +  V   D G Y    +  +        I +    APR
Sbjct: 62  GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV---EAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 50.6 bits (120), Expect = 8e-08
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 17/110 (15%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVTYEHDG 98
             +F+++P S +  TG  + +   V G  L   P + WF          S    +++   
Sbjct: 12  TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESH 71

Query: 99  --------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 140
                     L +  V   D G Y    +  +        I +    APR
Sbjct: 72  NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV---EAPR 118

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 12/161 (7%)

Query: 58  STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 115
                  I C  +G+        H +G+    D     E  +     +  +    AG Y+
Sbjct: 16  PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 73

Query: 116 CVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
           C+ +  E  S  S  + ++    +  P L V P      +G  V   C+ D         
Sbjct: 74  CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLL 131

Query: 173 SKD-EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
            K+  +  V+    K+       L  +     G YRC  S 
Sbjct: 132 LKEGRSSHVQRGYGKVQ--AEFPLGPVTTAHRGTYRCFGSY 170

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 12/161 (7%)

Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 299
                  I C  +G+        H +G+    D     E  +     +  +    AG Y+
Sbjct: 16  PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 73

Query: 300 CVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
           C+ +  E  S  S  + ++    +  P L V P      +G  V   C+ D         
Sbjct: 74  CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLL 131

Query: 357 SKD-EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
            K+  +  V+    K+       L  +     G YRC  S 
Sbjct: 132 LKEGRSSHVQRGYGKVQ--AEFPLGPVTTAHRGTYRCFGSY 170

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 13/133 (9%)

Query: 3   DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG----DLHVTVNAPPIFIQRPVSTTYS 58
           +R +  +  I  +     G+YSC+              DL VT       +         
Sbjct: 52  ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 111

Query: 59  TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNC 116
           +G      C ++           +G S     HV   +        L  V  +  G Y C
Sbjct: 112 SGEKVTFYCRLDTAT-SMFLLLKEGRS----SHVQRGYGKVQAEFPLGPVTTAHRGTYRC 166

Query: 117 VAQNS--EGSAES 127
               +    S  S
Sbjct: 167 FGSYNNHAWSFPS 179

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 19/172 (11%)

Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--TGSLRLYNIGPQDSGLYRC 208
           P    V I C+ +           + + F  DR     R       + ++  + +G Y C
Sbjct: 16  PKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSC 74

Query: 209 TASNLLGE----DVAEGYLTVTGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW 263
                       ++ +  L VT       +         +G      C ++         
Sbjct: 75  IYRVGELWSEPSNLLD--LVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTAT-SMFLL 131

Query: 264 FHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCVAQNS--EGSAES 311
             +G S     HV   +        L  V  +  G Y C    +    S  S
Sbjct: 132 LKEGRS----SHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPS 179

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 57.4 bits (138), Expect = 9e-09
 Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 33/268 (12%)

Query: 41  TVNAPPIFI-QRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH--VTYE 95
               P + I Q           T ++ CLV G+ P   Q+TW  DG  +D D     T +
Sbjct: 4   DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ 63

Query: 96  HDGF-----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR--LVVKPFDM 148
                     L L+         Y C       + E       + +       + +P   
Sbjct: 64  EGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPF 123

Query: 149 RAPAGSSVEIPCK----PDGEPLPRISWSKDEAEFV--------EDRNHKIHRTGSLRLY 196
                 S  I C        +   +++WS+   + V        + RN  +  T +L + 
Sbjct: 124 DLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG 183

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTG----APPIFIQRPVSTTYSTGSTSRITCL 252
                +   Y+C  ++           T T     AP ++          +     + CL
Sbjct: 184 TRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFAT-PEWPGSRDKRTLACL 242

Query: 253 VEGHPLPQ---MTWFHDGNSLDSDDHVT 277
           ++   +P+   + W H+   L    H T
Sbjct: 243 IQN-FMPEDISVQWLHNEVQLPDARHST 269

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN-----APPIFIQRPVSTTYST 59
             ++ L +       G  Y C   +P          T       AP ++          +
Sbjct: 175 TVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFAT-PEWPGS 233

Query: 60  GSTSRITCLVEGHPLPQ---MTWFHDGNSLDSDDHVT 93
                + CL++   +P+   + W H+   L    H T
Sbjct: 234 RDKRTLACLIQN-FMPEDISVQWLHNEVQLPDARHST 269

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 15/166 (9%)

Query: 58  STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYN 115
           + GS   + C  +G    Q    + +  +      +  E        +  +     G Y 
Sbjct: 17  TQGSPVTLRC--QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74

Query: 116 CVAQNSEG--SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
           C   +     S  S  + ++    +  P L  +P      +G +V + C           
Sbjct: 75  CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVAF-DGFI 132

Query: 172 WSKD-EAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASN 212
             K+ E E  +  N + H  GS      +  + P     YRC A +
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 15/166 (9%)

Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYN 299
           + GS   + C  +G    Q    + +  +      +  E        +  +     G Y 
Sbjct: 17  TQGSPVTLRC--QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74

Query: 300 CVAQNSEG--SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 355
           C   +     S  S  + ++    +  P L  +P      +G +V + C           
Sbjct: 75  CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVAF-DGFI 132

Query: 356 WSKD-EAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASN 396
             K+ E E  +  N + H  GS      +  + P     YRC A +
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 10/132 (7%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG-----DLHVTVNAPPIFIQRPVSTT 56
            +     +  I  +  EH GRY C  G+            +L VT       +    S  
Sbjct: 52  QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPV 111

Query: 57  YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAG 112
            ++G    + C  +           +G         +  H       +  +  V  S   
Sbjct: 112 VNSGGNVTLQCDSQVAF-DGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRW 170

Query: 113 VYNCVAQNSEGS 124
            Y C A +S   
Sbjct: 171 WYRCYAYDSNSP 182

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 14/169 (8%)

Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQDSGLYRC 208
             GS V + C+            +++           ++ + G   + +I  + +G YRC
Sbjct: 17  TQGSPVTLRCQGGQ-ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRC 75

Query: 209 TASNLLGE-----DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW 263
              +         D  E  +T     P    +P S   ++G    + C  +         
Sbjct: 76  YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVAF-DGFIL 133

Query: 264 FHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGS 308
             +G         +  H       +  +  V  S    Y C A +S   
Sbjct: 134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSP 182

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 54.1 bits (129), Expect = 3e-08
 Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 13/123 (10%)

Query: 143 VKPFDMRAP-------AGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
           VKP  +  P        G+S ++ C+    +    + W   +      ++        L 
Sbjct: 5   VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLT 62

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
           + N     +G   C  S           L V   P       VS          + C   
Sbjct: 63  VRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLT---VSPAALVPGDPEVACTAH 119

Query: 255 GHP 257
              
Sbjct: 120 KVT 122

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 14/145 (9%)

Query: 41  TVNAPPIFIQRPVSTTY-STGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG 98
           ++   P+ ++ P      + G++ ++TC +        + W     SL +      +   
Sbjct: 2   SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQS---DTGR 58

Query: 99  FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 158
            VL +     S AG   CV      + +    + +      +L V P    A      E+
Sbjct: 59  SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP-NQLTVSP---AALVPGDPEV 114

Query: 159 PCK-----PDGEPLPRISWSKDEAE 178
            C      P        S      E
Sbjct: 115 ACTAHKVTPVDPNALSFSLLVGGQE 139

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 13/145 (8%)

Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG 282
           ++   P            + G++ ++TC +        + W     SL +      +   
Sbjct: 2   SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQS---DTGR 58

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 342
            VL +     S AG   CV      + +    + +      +L V P    A      E+
Sbjct: 59  SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP-NQLTVSP---AALVPGDPEV 114

Query: 343 PCK-----PDGEPLPRISWSKDEAE 362
            C      P        S      E
Sbjct: 115 ACTAHKVTPVDPNALSFSLLVGGQE 139

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 10/91 (10%)

Query: 327 VKPFDMRAP-------AGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
           VKP  +  P        G+S ++ C+    +    + W   +      ++        L 
Sbjct: 5   VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLT 62

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           + N     +G   C  S           L V
Sbjct: 63  VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 17/184 (9%)

Query: 225 VTGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
             G      +         +  T  + C      + +    H     +    +  EH   
Sbjct: 2   HEGVHRKPSLLAHPGPLVKSEETVILQC--WSDVMFEHFLLHREGMFNDTLRLIGEHHDG 59

Query: 284 V----LVLNGVRESDAGVYNCVAQNSEGSA------ESVAMIRINGHRAPRLVVKPFDMR 333
           V      ++ + +  AG Y C    +          + + ++ I  +  P L  +P    
Sbjct: 60  VSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPT- 118

Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYR 391
             AG +V + C            S++               G+ +  + +GP    G YR
Sbjct: 119 VLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYR 177

Query: 392 CTAS 395
           C  S
Sbjct: 178 CFGS 181

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 16/184 (8%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
                    +         +  T  + C      + +    H     +    +  EH   
Sbjct: 2   HEGVHRKPSLLAHPGPLVKSEETVILQC--WSDVMFEHFLLHREGMFNDTLRLIGEHHDG 59

Query: 100 V----LVLNGVRESDAGVYNCVAQNSEGSA------ESVAMIRINGHRAPRLVVKPFDMR 149
           V      ++ + +  AG Y C    +          + + ++ I  +  P L  +P    
Sbjct: 60  VSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPT- 118

Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYR 207
             AG +V + C            S++               G+ +  + +GP    G YR
Sbjct: 119 VLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYR 177

Query: 208 CTAS 211
           C  S
Sbjct: 178 CFGS 181

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 9/132 (6%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG-------DLHVTVNAPPIFIQRPV 53
             D  S     IS + ++  G Y C        Y+        D+ +        +    
Sbjct: 56  HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQP 115

Query: 54  STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-FVLVLNGVRESDAG 112
             T   G    ++C              +G + +       + +G F         +  G
Sbjct: 116 GPTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGG 174

Query: 113 VYNCVAQNSEGS 124
            Y C     +  
Sbjct: 175 TYRCFGSFHDSP 186

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 26/184 (14%), Positives = 48/184 (26%), Gaps = 14/184 (7%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---- 191
           HR P L+  P      +  +V + C  D          ++       R    H  G    
Sbjct: 6   HRKPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-----LTVTGA-PPIFIQRPVSTTYSTGS 245
           +  +  +    +G YRC  S                + + G      +      T   G 
Sbjct: 64  NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE 123

Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-FVLVLNGVRESDAGVYNCVAQN 304
              ++C              +G + +       + +G F         +  G Y C    
Sbjct: 124 NVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSF 182

Query: 305 SEGS 308
            +  
Sbjct: 183 HDSP 186

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 37/206 (17%), Positives = 60/206 (29%), Gaps = 44/206 (21%)

Query: 142 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISW-------SKDEAEFVEDRNHKIHR 189
           ++       P   +V I C      P       I+W        K+   F    +H+   
Sbjct: 7   MMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAF 66

Query: 190 TG--------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR 235
                           SLRL  I  +++G YRC       +      L V  +P   +  
Sbjct: 67  RPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLL 126

Query: 236 PVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY---------EHDGF- 283
                    +  +  C   G +P    +TW            ++            DG  
Sbjct: 127 DQVG--MKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTF 184

Query: 284 ----VLVLNGVRESDAGVYNCVAQNS 305
                L LN  +E    VY CV +++
Sbjct: 185 NVTSCLKLNSSQEDPGTVYQCVVRHA 210

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 17/128 (13%)

Query: 10  LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
           L + G+Q E  G Y C         +G + + V A P                 +  C  
Sbjct: 84  LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKEN-EDKYMCES 142

Query: 70  EG-HPLP-QMTWFHDGNSLDSDDHVTY---------EHDGF-----VLVLNGVRESDAGV 113
            G +P    +TW            ++            DG       L LN  +E    V
Sbjct: 143 SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTV 202

Query: 114 YNCVAQNS 121
           Y CV +++
Sbjct: 203 YQCVVRHA 210

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 36/249 (14%), Positives = 64/249 (25%), Gaps = 66/249 (26%)

Query: 36  GDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDGNSLDSDD 90
            DL V + A         +          I C +            +TWF    + D + 
Sbjct: 1   ADLKVEMMAGG-------TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEV 53

Query: 91  HVTYEHDG--------------------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
            V                            L L G++  +AG Y C    +   A+    
Sbjct: 54  KVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQ 113

Query: 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDRNHKIH 188
           + +    +P   +   D      +  +  C+  G  P    I+W K   +F         
Sbjct: 114 LEVVA--SPASRLLL-DQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEI--- 167

Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
            +  +          G +  T+            L +            S+    G+   
Sbjct: 168 -SEDVITGPTIKNMDGTFNVTS-----------CLKLN-----------SSQEDPGTV-- 202

Query: 249 ITCLVEGHP 257
             C+V  H 
Sbjct: 203 YQCVVR-HA 210

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A 2l7u_A* 2e5e_A Length = 581

 Score = 55.3 bits (133), Expect = 7e-08
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 28/171 (16%)

Query: 147 DMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFV------------EDRNHKIHRTGSL 193
           ++ A  G  + + CK    +P  R+ W  +                  D   ++   GSL
Sbjct: 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL 434

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLT----VTGAPPIFIQRPVSTTYSTGSTSRI 249
            L  +G QD G++RC A N  G++    Y      + G P I      ++  + G  +++
Sbjct: 435 FLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDS---ASELTAGVPNKV 491

Query: 250 -TCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
            TC+ EG +P   ++W  DG  L  ++       G  +     R  + G++
Sbjct: 492 GTCVSEGSYPAGTLSWHLDGKPLVPNEK------GVSVKEQTRRHPETGLF 536

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------------HRTGSLR 194
           ++    G +  + C+ D      + WS    + +   + K                 S+ 
Sbjct: 15  NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
           + ++   D G Y C+    +    ++ YLTV G P
Sbjct: 75  VSDVSLSDEGQYTCSLFT-MPVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 13/91 (14%)

Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------------HRTGSLR 378
           ++    G +  + C+ D      + WS    + +   + K                 S+ 
Sbjct: 15  NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           + ++   D G Y C+    +    ++ YLTV
Sbjct: 75  VSDVSLSDEGQYTCSLFT-MPVKTSKAYLTV 104

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 12/104 (11%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY------ 94
            V           + T   G T+ +TC V+ +    + W +        D          
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 95  -----EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
                      + ++ V  SD G Y C    +     S A + +
Sbjct: 62  ELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY--------- 278
                     + T   G T+ +TC V+ +    + W +        D             
Sbjct: 5   GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV 64

Query: 279 --EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
                   + ++ V  SD G Y C    +     S A + +
Sbjct: 65  RASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 24/172 (13%), Positives = 47/172 (27%), Gaps = 12/172 (6%)

Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 200
           + V+P  +      S+E+ C                 E   ++     +           
Sbjct: 5   VHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL-----ETSLNKILLDEQAQWKHYLVSNI 59

Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP 259
               + +C  +    ++     ++V   P   I     T  + G +  I C V    PL 
Sbjct: 60  SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLD 119

Query: 260 QMT--WFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNS 305
            +T   F    +L  +                     RE     ++C+A   
Sbjct: 120 SLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 171

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 8/123 (6%)

Query: 7   STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ-RPVSTTYSTGSTSRI 65
           +           H     C           + +V+V  PP  +      T  + G +  I
Sbjct: 49  AQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTI 108

Query: 66  TCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVA 118
            C V    PL  +T   F    +L  +                     RE     ++C+A
Sbjct: 109 ECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA 168

Query: 119 QNS 121
              
Sbjct: 169 VLD 171

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 54  STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAG 112
           S+         + C  +G P   +       +S   D  V        L +  ++ S AG
Sbjct: 16  SSLVPLEKPVTLRC--QGPPGVDLYRLEKLSSSRYQDQAV--------LFIPAMKRSLAG 65

Query: 113 VYNCVAQNSEG-SAESVA-MIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 169
            Y C  QN    S  S    +   G    P L  +P      +G  V + C+       +
Sbjct: 66  RYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTR-YGFDQ 123

Query: 170 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
            +  K E +    +N +     S  +  +    SG YRC + +
Sbjct: 124 FALYK-EGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFS 165

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 238 STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAG 296
           S+         + C  +G P   +       +S   D  V        L +  ++ S AG
Sbjct: 16  SSLVPLEKPVTLRC--QGPPGVDLYRLEKLSSSRYQDQAV--------LFIPAMKRSLAG 65

Query: 297 VYNCVAQNSEG-SAESVA-MIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
            Y C  QN    S  S    +   G    P L  +P      +G  V + C+       +
Sbjct: 66  RYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTR-YGFDQ 123

Query: 354 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
            +  K E +    +N +     S  +  +    SG YRC + +
Sbjct: 124 FALYK-EGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFS 165

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRG----DLHVTVNAPPIFIQRPVSTTYSTG 60
           +    L I  ++R   GRY C   N +         +L  T       +        S+G
Sbjct: 49  QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108

Query: 61  STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
               + C    +   Q   + +G+                  +  V  + +G Y C + +
Sbjct: 109 GDVTLQCQTR-YGFDQFALYKEGDPAPY--KNPERWYRASFPIITVTAAHSGTYRCYSFS 165

Query: 121 SEGS 124
           S   
Sbjct: 166 SRDP 169

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 10/170 (5%)

Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-Q 201
           V P  +  P G SV + C    +    +       E    +   +    + ++Y +   Q
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ 58

Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQ 260
           +     C ++   G+  A+ +LTV   P      P+ +    G    + C VEG  P  Q
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQ 118

Query: 261 MT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
           +T         L  +  V  E       +   R+     ++C  +     
Sbjct: 119 LTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGAQFSCRTELDLRP 167

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ-RPVSTTYST 59
                +     +S V  +   +  C +  P G       +TV   P  ++  P+ +    
Sbjct: 43  LLPGNNRKVYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV 100

Query: 60  GSTSRITCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 116
           G    + C VEG  P  Q+T         L  +  V  E       +   R+     ++C
Sbjct: 101 GKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGAQFSC 159

Query: 117 VAQNSEGS 124
             +     
Sbjct: 160 RTELDLRP 167

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 15/141 (10%)

Query: 104 NGVRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
           +G++E+ A  +    +     G+ +    +               D    AG +V + C+
Sbjct: 2   SGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQ 61

Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKI------------HRTGSLRLYNIGPQDSGLYRCT 209
                   + WS    + +     +                 S+ + N+   D G Y C+
Sbjct: 62  VKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS 121

Query: 210 ASNLLGEDVAEGYLTVTGAPP 230
               +    A+  +TV G P 
Sbjct: 122 IFT-MPVRTAKSLVTVLGIPQ 141

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 288 NGVRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
           +G++E+ A  +    +     G+ +    +               D    AG +V + C+
Sbjct: 2   SGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQ 61

Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKI------------HRTGSLRLYNIGPQDSGLYRCT 393
                   + WS    + +     +                 S+ + N+   D G Y C+
Sbjct: 62  VKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS 121

Query: 394 ASNLLGEDVAEGYLTV 409
               +    A+  +TV
Sbjct: 122 IFT-MPVRTAKSLVTV 136

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 15/125 (12%)

Query: 8   TELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
            E   +  +R+H         +             ++ P         T   G T  + C
Sbjct: 5   KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPW----TSDETVVAGGTVVLKC 60

Query: 68  LVEGHPLPQMTWFH-DGNSLDSDDH----------VTYEHDGFVLVLNGVRESDAGVYNC 116
            V+ H    + W +    +L   +           VT       + ++ V  +D G Y C
Sbjct: 61  QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120

Query: 117 VAQNS 121
                
Sbjct: 121 SIFTM 125

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 11/85 (12%)

Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDH----------VTYEH 280
                   T   G T  + C V+ H    + W +    +L   +           VT   
Sbjct: 41  SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNS 305
               + ++ V  +D G Y C     
Sbjct: 101 HELSISISNVALADEGEYTCSIFTM 125

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 142 VVKPFDMRAPAGSSVEIPCK--PDGEPLPRISWSKDEAEFV--------------EDRNH 185
           +    ++ A  G S+ + C        + +++W + +                  +DR  
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR-V 65

Query: 186 KIHRTGSLRLYNIGPQDSGLYRCT-ASNLLGEDVAEGYLTVTGAPPI 231
                  L L ++   D+G Y C   +   G      +L V  +   
Sbjct: 66  APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 21/115 (18%)

Query: 326 VVKPFDMRAPAGSSVEIPCK--PDGEPLPRISWSKDEAEFV--------------EDRNH 369
           +    ++ A  G S+ + C        + +++W + +                  +DR  
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR-V 65

Query: 370 KIHRTGSLRLYNIGPQDSGLYRCT-ASNLLGEDVAEGYLTVTGENSVEPAPHTSR 423
                  L L ++   D+G Y C   +   G      +L V   +  E   H +R
Sbjct: 66  APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE---HGAR 117

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 49  IQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSL-----DSDDHVTYEHDGFV- 100
           I+   + +   G +  + C +      + Q+ W      L     D   H++      V 
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 101 ------LVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRI 133
                 L L  +  +D G Y C      +G+      + +
Sbjct: 67  PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 233 IQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSL-----DSDDHVTYEHDGFV- 284
           I+   + +   G +  + C +      + Q+ W      L     D   H++      V 
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 285 ------LVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRI 317
                 L L  +  +D G Y C      +G+      + +
Sbjct: 67  PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 62/360 (17%), Positives = 109/360 (30%), Gaps = 69/360 (19%)

Query: 5   RSSTE--LVISGVQREHGGRYSCVAGNPAG---VYRGDLHVTVN-----APPIFIQRPVS 54
           +S T   L ISG++ E    Y C + N +    V+     VTV       P + +  P S
Sbjct: 65  KSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSS 124

Query: 55  TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTY---EHDGF-----VLVLN 104
                 + + + CL+    P    + W  DG+ + +    T    + +        L L 
Sbjct: 125 EE-LQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLT 183

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKP 162
             +      Y+C   +   + E                V P     ++ +G +  + C  
Sbjct: 184 PEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLV 243

Query: 163 DG---EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC------TASNL 213
                +P+  +SW+             +H   ++       Q SGLY         +S+L
Sbjct: 244 KDYFPQPV-TVSWNSGA------LTSGVHTFPAVL------QSSGLYSLSSVVTVPSSSL 290

Query: 214 LGEDVA-----EGYLTVTGAPPIFIQRPVSTTY--------STGSTSRITCLVEG----H 256
             +        +   T        +  P    +            T  +TC+V       
Sbjct: 291 GTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHED 350

Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDG-------FVLVLNGVRESDAGVYNCVAQNSEGSA 309
           P  +  W+ DG  + +      E           VL +      D   Y C   N    A
Sbjct: 351 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 410

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 59/296 (19%), Positives = 103/296 (34%), Gaps = 41/296 (13%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYSTG 60
           SS  L ++  Q +    YSC   +        +  T        P +F   P S + ++G
Sbjct: 177 SSY-LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKS-TSG 234

Query: 61  STSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVT---YEHDG-FVL--VLNGVRESDAG 112
            T+ + CLV+ + P P  ++W  +  +L S  H      +  G + L  V+  V  S  G
Sbjct: 235 GTAALGCLVKDYFPQPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVT-VPSSSLG 291

Query: 113 --VYNC-VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG----E 165
              Y C V      +     +  ++         KP D       + E+ C        +
Sbjct: 292 TQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMI-SRTPEVTCVVVDVSHED 350

Query: 166 PLPRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
           P  + +W  D  +          +  N        L + +    D   Y+C  SN     
Sbjct: 351 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 410

Query: 218 VAEGYLTVTG----APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDG 267
             E  ++        P ++   P     +    S +TCLV+G +P    + W  +G
Sbjct: 411 PIEKTISKAKGQPREPQVYTLPPSREEMTKNQVS-LTCLVKGFYPSDIAVEWESNG 465

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 27/115 (23%)

Query: 142 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSK---------------------D 175
           V  P  +    G SV +PC       +   + +++W++                      
Sbjct: 4   VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63

Query: 176 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGAP 229
             EFV  R     R  SLR++ +  +D G Y C       G    + +L V   P
Sbjct: 64  RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 27/114 (23%)

Query: 326 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSK---------------------D 359
           V  P  +    G SV +PC       +   + +++W++                      
Sbjct: 4   VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63

Query: 360 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGE 412
             EFV  R     R  SLR++ +  +D G Y C       G    + +L V  +
Sbjct: 64  RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 10  LVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPP 46
           L + G++ E  G Y+C     P G    D+ + V A P
Sbjct: 81  LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 17/95 (17%)

Query: 153 GSSVEIPC-KPDGEPLPRISWSKDE----AEFV-----------EDRNHKIHRTGSLRLY 196
           GS+V +   +   E   +++W         E+            + R     ++G+L + 
Sbjct: 19  GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGY-LTVTGAPP 230
            +  +D+  Y        G +      L V    P
Sbjct: 79  KVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP 113

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 17/90 (18%)

Query: 337 GSSVEIPC-KPDGEPLPRISWSKDE----AEFV-----------EDRNHKIHRTGSLRLY 380
           GS+V +   +   E   +++W         E+            + R     ++G+L + 
Sbjct: 19  GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78

Query: 381 NIGPQDSGLYRCTASNLLGEDVAEGY-LTV 409
            +  +D+  Y        G +      L V
Sbjct: 79  KVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 Length = 438

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 67/329 (20%), Positives = 106/329 (32%), Gaps = 77/329 (23%)

Query: 5   RSSTE--LVISGVQREHGGRYSCVAGNPAGVY--RGDLHVTVN----APPIFIQRPVSTT 56
            S T+  L I  V+ +    Y C   N   +    G   + +     AP + I  P S  
Sbjct: 70  GSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTK-LDLKRADAAPTVSIFPPSSEQ 128

Query: 57  YSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY----EHDGF-----VLVLNG 105
             T   + + C +   +P    + W  DG+   +    ++      D        L L  
Sbjct: 129 -LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 187

Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLV------VKPFDMRAPAGSSVEIP 159
                   Y C A +   ++  V     N      LV      VKP       G S+++ 
Sbjct: 188 DEYERHNSYTCEATHKTSTSPIVKSFNRN-ECEVMLVESGGGLVKP-------GGSLKLS 239

Query: 160 CKPDG-------------------EPLPRISWSKDE---AEFVEDRNHKIHRTGS----- 192
           C   G                   E +  IS         + V+ R   I R  +     
Sbjct: 240 CTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGR-FTISRDNAKNTLY 298

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV----TGAPPIFIQRPVSTTYS 242
           L++ ++   D+ +Y C      G D    Y      +TV    T  P ++   P S   +
Sbjct: 299 LQMSSLRSADTAMYYC-VRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAA-A 356

Query: 243 TGSTSRITCLVEG-HPLP-QMTWFHDGNS 269
             S   + CLV+G  P P  +TW     S
Sbjct: 357 AASMVTLGCLVKGYFPEPVTVTWNSGSLS 385

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 59  TGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRE-SDAGVYNC 116
           +G+T  +TC     P  ++ W H+  ++  D D      D   L L    E   +G Y C
Sbjct: 20  SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77

Query: 117 VAQNSEGSAESVAM 130
             + S+    +  +
Sbjct: 78  YPRGSKPEDANFYL 91

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRE-SDAGVYNC 300
           +G+T  +TC     P  ++ W H+  ++  D D      D   L L    E   +G Y C
Sbjct: 20  SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77

Query: 301 VAQNSEGSAESVAM 314
             + S+    +  +
Sbjct: 78  YPRGSKPEDANFYL 91

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSLRLY 196
             +   P+ +   +G++V + C     P   I W  +       ED  +       L L 
Sbjct: 8   GGITQTPYKVSI-SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64

Query: 197 NIG-PQDSGLYRCTASNLLGED 217
                + SG Y C       ED
Sbjct: 65  EFSELEQSGYYVCYPRGSKPED 86

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSLRLY 380
             +   P+ +   +G++V + C     P   I W  +       ED  +       L L 
Sbjct: 8   GGITQTPYKVSI-SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64

Query: 381 NIG-PQDSGLYRCTASNLLGED 401
                + SG Y C       ED
Sbjct: 65  EFSELEQSGYYVCYPRGSKPED 86

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 49.8 bits (117), Expect = 4e-06
 Identities = 13/107 (12%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 72  HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 131
             L ++ W      L ++           L++  + E D+GVY C+++      ++V   
Sbjct: 559 SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVF-- 615

Query: 132 RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 178
           ++       + V P   +     ++ +          ++  +  +  
Sbjct: 616 QVVAKHVLEVKVVP---KPVVAPTLSVVQTEGSRIATKVLVASTKHH 659

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 49.8 bits (117), Expect = 4e-06
 Identities = 13/107 (12%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 256 HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315
             L ++ W      L ++           L++  + E D+GVY C+++      ++V   
Sbjct: 559 SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVF-- 615

Query: 316 RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
           ++       + V P   +     ++ +          ++  +  +  
Sbjct: 616 QVVAKHVLEVKVVP---KPVVAPTLSVVQTEGSRIATKVLVASTKHH 659

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 48.6 bits (114), Expect = 9e-06
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGL 389
                 G + E+ C      L R+ W         E   + +    +L ++N+   DSG+
Sbjct: 542 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGV 600

Query: 390 YRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASRE 447
           Y+C +     ++     +       V+  P     P+ S        I   V +AS +
Sbjct: 601 YQCLSEE-RVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTK 657

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 45.5 bits (106), Expect = 8e-05
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGL 205
                 G + E+ C      L R+ W         E   + +    +L ++N+   DSG+
Sbjct: 542 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGV 600

Query: 206 YRCTA-----SNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
           Y+C +     +  + + VA+  L V   P   +   +S   + GS      LV    
Sbjct: 601 YQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTK 657

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-06
 Identities = 99/637 (15%), Positives = 204/637 (32%), Gaps = 166/637 (26%)

Query: 327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI--GP 384
           V  FD            CK D + +P+   SK+E + +      +  T  LRL+      
Sbjct: 30  VDNFD------------CK-DVQDMPKSILSKEEIDHIIMSKDAVSGT--LRLFWTLLSK 74

Query: 385 QDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLA 444
           Q+  + +      + E +   Y  +      E      R+PS            M  ++ 
Sbjct: 75  QEEMVQK-----FVEEVLRINYKFLMSPIKTEQ-----RQPS------------MMTRMY 112

Query: 445 SREVDAAVNATINSLFG-YHSNEQQDHGSLMK-LLRFPDE----------SARTVVRAAD 492
             + D   N   N +F  Y+ +  Q +  L + LL               S +T V A D
Sbjct: 113 IEQRDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALD 169

Query: 493 VYERTLSHIKKHIQAGVK-MNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKR 551
           V   +   ++  +   +  +NL    S         +L+ +  +DP         +  K 
Sbjct: 170 VC-LSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKL 225

Query: 552 PTENLNKELTDKLFTTFHAVSL---D-------LAAMNIQ-R----GRDHGIPEY---NA 593
              ++  EL   L +  +   L             A N+  +     R   + ++     
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 594 WREYCGLPRANTF-EDLAREITDRRVRDKLQRLYGHPGFSYHDVL--SPRQIELIANLSG 650
                    + T   D  + +  + +  + Q L   P     +VL  +PR++ +IA    
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---P----REVLTTNPRRLSIIA---- 334

Query: 651 CMEHQRTANCSDLCFHTK-YRTIDGTCNNLQHPMWGASLTGFR-RLLKPIYENGFSTPVA 708
                   +  D       ++ ++  C+ L   +  +SL        + +++   S    
Sbjct: 335 -------ESIRDGLATWDNWKHVN--CDKLTTII-ESSLNVLEPAEYRKMFDR-LS---- 379

Query: 709 PILSSPMAGNIDPFVGAILEDQVDGGRVGPTM-----RCLLIDQFK----RIRDGNIDPF 759
            +   P + +I   + +++   V    V   +       L+  Q K     I    ++  
Sbjct: 380 -VF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-- 434

Query: 760 VGAILEDQVDGGRVGPTMRCLLIDQFKRIR------------DGNIDPFVG-----AILE 802
               L+ +++       +   ++D +   +            D      +G         
Sbjct: 435 ----LKVKLEN---EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 803 DQVDGGRVGPTMRCLLID-QF--KRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDS 859
           +++         R + +D +F  ++IR     W  N S      L Q+K       ICD+
Sbjct: 488 ERMTL------FRMVFLDFRFLEQKIRHDSTAW--NASGSILNTLQQLKFYK--PYICDN 537

Query: 860 GDRLTEVRVC----FSPRPTTSI--TPDPVITHMVMQ 890
            D   E  V     F P+   ++  +    +  + + 
Sbjct: 538 -DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 5e-04
 Identities = 48/287 (16%), Positives = 83/287 (28%), Gaps = 92/287 (32%)

Query: 326 VVKPFDMRA--------PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 377
           V++P + R         P   S  IP       L  + W       V    +K+H+   +
Sbjct: 365 VLEPAEYRKMFDRLSVFP--PSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS----------REPSA 427
                  +       +  ++        YL +  +   E A H S           +   
Sbjct: 418 E------KQPKESTISIPSI--------YLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 428 SKPSVADDTIHMAVKLASREVDAAVNATINSLFGYH--SNEQQDHGSLMKL----LRFPD 481
             P   D   +                   S  G+H  + E  +  +L ++     RF  
Sbjct: 464 LIPPYLDQYFY-------------------SHIGHHLKNIEHPERMTLFRMVFLDFRF-- 502

Query: 482 ESARTVVRAADVYERTLSHIKKHIQA-GVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLR 540
                        E+ + H      A G  +N  + L   K +        E  V+ +L 
Sbjct: 503 ------------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 541 GFITSPAKRKRPTENL-NKELTD----KLFTTFHAVSLDLAAMNIQR 582
            F+       +  ENL   + TD     L     A+  + A   +QR
Sbjct: 551 -FL------PKIEENLICSKYTDLLRIALMAEDEAIFEE-AHKQVQR 589

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 33/122 (27%)

Query: 141 LVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSK--------------------- 174
           +V    ++    GS V + C         + +   +W                       
Sbjct: 2   VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDI-SFTWRYQPEGGRDAISIFHYAKGQPYI 60

Query: 175 DEAEFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY--LTVTGA 228
           DE    ++R         + GS+ ++N+   D+G + C   N            L V   
Sbjct: 61  DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120

Query: 229 PP 230
            P
Sbjct: 121 VP 122

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 31/116 (26%)

Query: 325 LVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSK--------------------- 358
           +V    ++    GS V + C         + +   +W                       
Sbjct: 2   VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDI-SFTWRYQPEGGRDAISIFHYAKGQPYI 60

Query: 359 DEAEFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           DE    ++R         + GS+ ++N+   D+G + C   N          +T+ 
Sbjct: 61  DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 1/77 (1%)

Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 193
                         +     S   + C  +       SW   E                L
Sbjct: 496 ECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCIL 554

Query: 194 RLYNIGPQDSGLYRCTA 210
            + N+  Q  G Y C A
Sbjct: 555 FIENLTAQQYGHYFCEA 571

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 1/77 (1%)

Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 377
                         +     S   + C  +       SW   E                L
Sbjct: 496 ECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCIL 554

Query: 378 RLYNIGPQDSGLYRCTA 394
            + N+  Q  G Y C A
Sbjct: 555 FIENLTAQQYGHYFCEA 571

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 2/104 (1%)

Query: 16  QREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 75
           Q      YS        +   + H     P          + +  S   ++C +E     
Sbjct: 471 QGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHA 529

Query: 76  QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
             +W H  N   S +      +  +L +  +     G Y C AQ
Sbjct: 530 TYSWRHKENVEQSCEPGHQSPNC-ILFIENLTAQQYGHYFCEAQ 572

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 34/255 (13%), Positives = 68/255 (26%), Gaps = 22/255 (8%)

Query: 67  CLVEGHPLPQMTW-FHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
           CL +  P+P  T+   D +   +            L  +        V+   A + E   
Sbjct: 322 CLPDQQPIPTETFQVADRHPEVAQRVEPMGPLKTPLFHSKYHYQKVAVHRMQASHGET-- 379

Query: 126 ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--------EA 177
             V  +  +     ++V       + A + +EI        +  +S   +        + 
Sbjct: 380 FHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQW 439

Query: 178 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL---------TVTGA 228
           E  +         G      +  +D          +         L              
Sbjct: 440 EVSQVPLDLCEVYGGGCHGCLMSRDPYCGWDQGRCISIYSSERSVLQSINPAEPHKECPN 499

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
           P          + +  S   ++C +E       +W H  N   S +      +  +L + 
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNC-ILFIE 557

Query: 289 GVRESDAGVYNCVAQ 303
            +     G Y C AQ
Sbjct: 558 NLTAQQYGHYFCEAQ 572

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 45.5 bits (106), Expect = 4e-05
 Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 13/173 (7%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
             +++        + G    +TC  +      +TW  D +S            G  L + 
Sbjct: 6   KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSE-------VLGSGKTLTIQ 56

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 164
                DAG Y C      G   S +++ ++              +    +   + C+   
Sbjct: 57  VKEFGDAGQYTCHK---GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKN 113

Query: 165 EPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216
                   W    +  +         +   +    G       R    N   E
Sbjct: 114 YSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYE 166

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 45.5 bits (106), Expect = 4e-05
 Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 13/173 (7%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
             +++        + G    +TC  +      +TW  D +S            G  L + 
Sbjct: 6   KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSE-------VLGSGKTLTIQ 56

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 348
                DAG Y C      G   S +++ ++              +    +   + C+   
Sbjct: 57  VKEFGDAGQYTCHK---GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKN 113

Query: 349 EPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
                   W    +  +         +   +    G       R    N   E
Sbjct: 114 YSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYE 166

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 17/83 (20%)

Query: 147 DMRAPAGSSVEIPC-KPDGEPLPRISWSKDE----AEFV------------EDRNHKIHR 189
           D+ A  GS+V +   K    P  RI+W   +     E+             + R +    
Sbjct: 12  DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEEN 71

Query: 190 TGSLRLYNIGPQDSGLYRCTASN 212
            G+L + N+  +D G Y      
Sbjct: 72  NGALHISNVRKEDKGTYYMRVLR 94

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 17/83 (20%)

Query: 331 DMRAPAGSSVEIPC-KPDGEPLPRISWSKDE----AEFV------------EDRNHKIHR 373
           D+ A  GS+V +   K    P  RI+W   +     E+             + R +    
Sbjct: 12  DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEEN 71

Query: 374 TGSLRLYNIGPQDSGLYRCTASN 396
            G+L + N+  +D G Y      
Sbjct: 72  NGALHISNVRKEDKGTYYMRVLR 94

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 33/110 (30%)

Query: 148 MRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG----------- 191
           +    G +  +PCK      D  PL  I W    A+  +     I  +G           
Sbjct: 15  IEKAKGETAYLPCKFTLSPEDQGPL-DIEWLISPADNQKVDQVIILYSGDKIYDDYYPDL 73

Query: 192 ----------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
                           S+ + N+   D G Y+C      G    + +L V
Sbjct: 74  KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 33/110 (30%)

Query: 332 MRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG----------- 375
           +    G +  +PCK      D  PL  I W    A+  +     I  +G           
Sbjct: 15  IEKAKGETAYLPCKFTLSPEDQGPL-DIEWLISPADNQKVDQVIILYSGDKIYDDYYPDL 73

Query: 376 ----------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
                           S+ + N+   D G Y+C      G    + +L V
Sbjct: 74  KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 22/82 (26%)

Query: 149 RAPAGSSVEIPCK---PDGEPLP--RISWSKDEAEFV------EDRNHKIH-----RTG- 191
           +A    + ++PC+      + L    + W   E   +      +++   +H     RT  
Sbjct: 5   QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64

Query: 192 -----SLRLYNIGPQDSGLYRC 208
                +LRL+N+  +D GLY+C
Sbjct: 65  DSDSWTLRLHNLQIKDKGLYQC 86

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 22/82 (26%)

Query: 333 RAPAGSSVEIPCK---PDGEPLP--RISWSKDEAEFV------EDRNHKIH-----RTG- 375
           +A    + ++PC+      + L    + W   E   +      +++   +H     RT  
Sbjct: 5   QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64

Query: 376 -----SLRLYNIGPQDSGLYRC 392
                +LRL+N+  +D GLY+C
Sbjct: 65  DSDSWTLRLHNLQIKDKGLYQC 86

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 38/311 (12%), Positives = 79/311 (25%), Gaps = 40/311 (12%)

Query: 63  SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV----YNCVA 118
           S +   ++      M          + +     H         +  +   V    Y    
Sbjct: 117 SNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNL 176

Query: 119 QNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 176
             S     S    + +I+     +  V P D     GS +   C    + L  +    + 
Sbjct: 177 HFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNC 236

Query: 177 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP 236
                D         ++++ NI    S            +++    +     P      P
Sbjct: 237 PLIHLDG-----ENVAIKIRNISV--SASSGTNVVFTTEDNIFGTVIFAGYPP----DTP 285

Query: 237 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN----SLDSDDHVTYEH------DGFVLV 286
                 T     I C      +  +      +       S  +V  +       + + L+
Sbjct: 286 QQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLL 345

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
              +   +   +   A N  G ++S  ++ I         V P     P    V+     
Sbjct: 346 FQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEK------VYP---HTPTSFKVK----D 392

Query: 347 DGEPLPRISWS 357
                 ++SW 
Sbjct: 393 INSTAVKLSWH 403

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 29/263 (11%), Positives = 66/263 (25%), Gaps = 37/263 (14%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
           ++          P       GS     C+ +   L  +    +   +  D          
Sbjct: 193 ISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVA----- 247

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
            + +  +  S +   N V    +    +V         A      P  +        EI 
Sbjct: 248 -IKIRNISVSASSGTNVVFTTEDNIFGTV-------IFAGYPPDTPQQLNCETHDLKEII 299

Query: 160 C-----KPDGEPLPRIS------WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
           C     +      PR +          +   ++      + +  L    +  Q+   +  
Sbjct: 300 CSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTL 359

Query: 209 TASNLLGEDVAEGYLTVT-----GAPPIFIQRPVSTTY--------STGSTSRITCLVEG 255
            A N LG   +   + +T       P  F  + +++T            +     C +E 
Sbjct: 360 NAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEI 419

Query: 256 HPLPQMTWFHDGNSLDSDDHVTY 278
                +    +      ++    
Sbjct: 420 KKSNSVQEQRNVTIQGVENSSYL 442

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 5/98 (5%)

Query: 1   TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP--IFIQRPVSTTYS 58
                 +    +  VQ    G Y      P    +  L + V  PP    +   ++    
Sbjct: 247 WGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAP 306

Query: 59  TGSTSRITCLVEG-HPLP--QMTWFHDGNSLDSDDHVT 93
             +   + CLV   +P    ++ W   G          
Sbjct: 307 GEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAE 344

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 207

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 3   DRRSSTELVISGVQREHGGRYSCVAGNPAG-----------VYRGDLHVTVNAPPIFIQR 51
           +RR ST L I   Q E  G Y C A                V+     VTV        +
Sbjct: 67  ERRYST-LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAK 125

Query: 52  PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 109
           P  + +   + + + CLV+   P    ++       ++ D  +     G    +   +  
Sbjct: 126 P--SVFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYG 183

Query: 110 DAGVYNCVAQNSEGSAES 127
           D+    C  Q++  +  S
Sbjct: 184 DSNSVTCSVQHNSETVHS 201

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 25/111 (22%)

Query: 326 VVKPFDMRAPAGSSVEIPCK----PDGEPLPRISWSKDEA-----------------EFV 364
           V +P ++R   GSS  +PC          +  ++W +DE                    +
Sbjct: 11  VSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPL 70

Query: 365 EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG---YLTVTGE 412
                       L + ++   D+ +Y C    +LG  V  G    L V  E
Sbjct: 71  ASSRFLHDHQAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVVEKE 120

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 25/110 (22%)

Query: 142 VVKPFDMRAPAGSSVEIPCK----PDGEPLPRISWSKDEA-----------------EFV 180
           V +P ++R   GSS  +PC          +  ++W +DE                    +
Sbjct: 11  VSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPL 70

Query: 181 EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG---YLTVTG 227
                       L + ++   D+ +Y C    +LG  V  G    L V  
Sbjct: 71  ASSRFLHDHQAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVVEK 119

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 29/121 (23%)

Query: 149 RAPAGSSVEIPC----KPDGEPLPRISWSKDEAEFV------------------EDRNHK 186
           RA  G   E+PC      +   +  + W +     V                    R   
Sbjct: 17  RALVGDEAELPCRISPGKNATGM-EVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 75

Query: 187 IHRTG-----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY 241
           +  +      +LR+ N+   D G Y C   +   ++ A   L V   P  +I    S ++
Sbjct: 76  LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWINPGRSRSH 134

Query: 242 S 242
            
Sbjct: 135 H 135

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 29/123 (23%)

Query: 333 RAPAGSSVEIPC----KPDGEPLPRISWSKDEAEFV------------------EDRNHK 370
           RA  G   E+PC      +   +  + W +     V                    R   
Sbjct: 17  RALVGDEAELPCRISPGKNATGM-EVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 75

Query: 371 IHRTG-----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREP 425
           +  +      +LR+ N+   D G Y C   +   ++ A   L V  +      P  SR  
Sbjct: 76  LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWINPGRSRSH 134

Query: 426 SAS 428
              
Sbjct: 135 HHH 137

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 6/95 (6%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP----IFIQRPVSTTYSTG 60
             S+ L        HG  ++C A  P         ++ +       + +  P S   +  
Sbjct: 63  SVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALN 122

Query: 61  STSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVT 93
               +TCL  G       + W      L  + ++T
Sbjct: 123 ELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT 157

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 13/91 (14%), Positives = 21/91 (23%), Gaps = 24/91 (26%)

Query: 142 VVKPFDMRAPAGSSVEIPCK---PDGEPLPRISWSK----DEAEFVEDRNHKIHRTG--- 191
           +  P  +       V+I C      G     + W      D        +   H      
Sbjct: 5   LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKY 64

Query: 192 --------------SLRLYNIGPQDSGLYRC 208
                         SL++  +   D   Y C
Sbjct: 65  RGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 13/91 (14%), Positives = 21/91 (23%), Gaps = 24/91 (26%)

Query: 326 VVKPFDMRAPAGSSVEIPCK---PDGEPLPRISWSK----DEAEFVEDRNHKIHRTG--- 375
           +  P  +       V+I C      G     + W      D        +   H      
Sbjct: 5   LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKY 64

Query: 376 --------------SLRLYNIGPQDSGLYRC 392
                         SL++  +   D   Y C
Sbjct: 65  RGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 38/220 (17%), Positives = 64/220 (29%), Gaps = 61/220 (27%)

Query: 50  QRPVSTTYSTGSTSRITCLVEGHPLPQMTWF--HDGNSL------DSDDHVTYEHDGFV- 100
            R  S    TGS++ ITC +       + W+   +G +       DS         G   
Sbjct: 7   GRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISP 66

Query: 101 --------------LVLNGVRESDAGVYNCVAQNSEG------------------SAESV 128
                         ++L  + E+D+GVY C   +                     SA+  
Sbjct: 67  GKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDA 126

Query: 129 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC----------------KPDGEPLPRISW 172
                    A ++      +  P   +V + C                 P  E +  I  
Sbjct: 127 KKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQ 186

Query: 173 SKDEAEFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRC 208
             DE      R      K  ++ +L +  +  +DS  Y C
Sbjct: 187 GSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFC 226

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 38/220 (17%), Positives = 64/220 (29%), Gaps = 61/220 (27%)

Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWF--HDGNSL------DSDDHVTYEHDGFV- 284
            R  S    TGS++ ITC +       + W+   +G +       DS         G   
Sbjct: 7   GRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISP 66

Query: 285 --------------LVLNGVRESDAGVYNCVAQNSEG------------------SAESV 312
                         ++L  + E+D+GVY C   +                     SA+  
Sbjct: 67  GKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDA 126

Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC----------------KPDGEPLPRISW 356
                    A ++      +  P   +V + C                 P  E +  I  
Sbjct: 127 KKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQ 186

Query: 357 SKDEAEFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRC 392
             DE      R      K  ++ +L +  +  +DS  Y C
Sbjct: 187 GSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFC 226

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 16/101 (15%)

Query: 224 TVTGAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-------- 274
           +   +    +   +       G  +  +   +   + Q TWF +G  L S++        
Sbjct: 2   SSGSSGTARLVAGLEDVQVYDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPG 59

Query: 275 --HVTYEHDGFV--LVLNGVRESDAGVY-NCVAQNSEGSAE 310
                 E  G    L+L+ V+  D+G          + SA 
Sbjct: 60  ALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAA 100

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 16/97 (16%)

Query: 44  APPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----------HV 92
           +    +   +       G  +  +   +   + Q TWF +G  L S++            
Sbjct: 6   SGTARLVAGLEDVQVYDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRY 63

Query: 93  TYEHDGFV--LVLNGVRESDAGVY-NCVAQNSEGSAE 126
             E  G    L+L+ V+  D+G          + SA 
Sbjct: 64  RIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAA 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	940
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3q9k_A	595	Lactoperoxidase, LPO; bovine lactoperoxidase, oxid	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
1d2v_C	466	Myeloperoxidase; heme-protein, oxidoreductase, per	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.98
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.98
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	99.98
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.98
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.98
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.96
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.96
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.95
3q9k_A	595	Lactoperoxidase, LPO; bovine lactoperoxidase, oxid	99.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.95
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.94
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.93
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.93
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.93
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.91
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.91
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.91
1d2v_A	104	Myeloperoxidase; heme-protein, oxidoreductase, per	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.9
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.9
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.89
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.89
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.89
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.89
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.89
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.89
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.89
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.88
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.88
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.88
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.88
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.88
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.88
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.88
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.88
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.87
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.87
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.87
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.87
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.87
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.86
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.86
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.86
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.86
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.86
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.86
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.86
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.86
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.85
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.85
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.85
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.85
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.85
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.85
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.84
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.84
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.84
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.84
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.83
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.83
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.83
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.83
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.83
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.83
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.82
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.82
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.82
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.82
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.82
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.82
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.82
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.81
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.81
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.81
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.81
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.81
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.81
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.81
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.81
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.8
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.8
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.8
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.8
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.8
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.8
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.8
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.8
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.8
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.8
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.79
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.79
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.79
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.79
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.79
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.79
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.79
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.78
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.78
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.78
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.78
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.78
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.78
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.77
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.77
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.77
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.77
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.76
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.76
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.76
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.76
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.76
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.76
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.75
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.75
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.75
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.75
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.75
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.75
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.75
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.75
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.75
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.74
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.74
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.74
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.73
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.73
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.73
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.73
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.72
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.72
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.72
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.72
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.71
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.71
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.71
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.71
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.71
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.71
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.71
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.71
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.71
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.71
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.7
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.7
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.7
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.7
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.7
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.7
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.7
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.7
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.7
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.7
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.7
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.7
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.7
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.7
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.7
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.7
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.69
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.69
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.69
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.69
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.69
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.69
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.68
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.68
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.68
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.68
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.68
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.68
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.68
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.68
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.68
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.68
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.67
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.67
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.67
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.67
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.67
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.67
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.67
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.67
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.67
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.67
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.67
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.67
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.66
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.66
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.66
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.66
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.66
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.66
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.66
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.66
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.66
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.66
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.65
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.65
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.65
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.65
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.65
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.65
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.65
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.65
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.64
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.64
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.64
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.64
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.64
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.64
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.64
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.64
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.64
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.64
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.64
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.64
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.64
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.63
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.63
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.63
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.63
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.63
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.63
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.62
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.62
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.61
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.61
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.61
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.61
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.61
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.61
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.61
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.61
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.6
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.6
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.6
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.6
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.6
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.6
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.59
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.59
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.59
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.59
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.58
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.58
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.58
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.58
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.57
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.57
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.57
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.57
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.57
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.57
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.57
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.57
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.56
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.56
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.56
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.56
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.56
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.56
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.56
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.56
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.55
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.55
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.55
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.55
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.55
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.55
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.54
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.54
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.54
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.54
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.54
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.54
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.54
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.54
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.54
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.53
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.53
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.53
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.52
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.51
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.51
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.51
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.5
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.5
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.49
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.47
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.47
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.47
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.47
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.46
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.45
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.45
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.45
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.44
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.43
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.43
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.42
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.42
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.42
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.41
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.41
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.41
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.41
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.41
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.41
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.4
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.4
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.4
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.4
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.39
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.39
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.38
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.38
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.37
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.37
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.37
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.37
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.37
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.37
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.36
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.36
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.36
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.36
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.35
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.35
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.34
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.34
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.34
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.34
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.33
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.32
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.32
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.32
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.32
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.32
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.31
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.31
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.3
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.3
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.3
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.3
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.3
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.29
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.29
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.29
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.28
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.28
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.27
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.27
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.27
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.27
1he7_A	126	High affinity nerve growth factor receptor; transf	99.27
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.26
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.26
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.26
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.26
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.25
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.25
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.25
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.24
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.24
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.24
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.23
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.23
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.23
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.23
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.22
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.21
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.21
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.21
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.21
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.2
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.2
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.19
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.18
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.18
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.17
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.17
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.17
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.17
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.17
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.16
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.16
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.16
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.16
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.15
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.15
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.15
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.15
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.15
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.15
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.14
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.14
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.14
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.13
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.13
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.13
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.12
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.12
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.12
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.11
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.11

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=7e-53  Score=506.12  Aligned_cols=482  Identities=25%  Similarity=0.438  Sum_probs=388.7

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEe---CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD   82 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~---~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd   82 (940)
                      +..+|+|.+++.+|+|.|+|.|.|..|.......+.|.   .+|.+...+.++.+.+|+++.|.|.+.|.|++.|+|+|+
T Consensus        59 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~  138 (570)
T 3b43_A           59 NVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD  138 (570)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEET
T ss_pred             CEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEEC
Confidence            45789999999999999999999999988777777775   367888888888999999999999999999999999999


Q ss_pred             CEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecc-cCCeeEecCCceeecCCCcEEEE
Q psy11143         83 GNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIP  159 (940)
Q Consensus        83 g~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~  159 (940)
                      |..+.........  .....|.|.++..+|+|.|+|.|.|..|.....+.+.|... .+|.+...+....+.+|++++|.
T Consensus       139 g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~  218 (570)
T 3b43_A          139 GELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK  218 (570)
T ss_dssp             TEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEE
T ss_pred             CEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEE
Confidence            9999766555433  33456899999999999999999999998888888888754 34667778888889999999999


Q ss_pred             EEeCCCCCCeEEEeeCCeeccccCceEEe---eeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCC
Q psy11143        160 CKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP  236 (940)
Q Consensus       160 C~v~g~P~p~ItW~k~g~~i~~~~~~~~~---~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p  236 (940)
                      |.+.|.|.+.++|++++..+....++.+.   ....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|. .+|.+....
T Consensus       219 C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~-~~p~~~~~~  297 (570)
T 3b43_A          219 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKL  297 (570)
T ss_dssp             EEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCB-CCCEEEECC
T ss_pred             EEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEee-cCCcccccC
Confidence            99999999999999999988766655443   23579999999999999999999999999999999998 556655443


Q ss_pred             -CeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEee--cCeEEEEeeeccCCCeEEEEEEEeCCCCceeEE
Q psy11143        237 -VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA  313 (940)
Q Consensus       237 -~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~--~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~  313 (940)
                       ....+.+|+.+.|.|.+.|.|.|.++|+|++..+....++.+..  ....|.|.++..+|+|.|+|.|.|..|....++
T Consensus       298 ~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~  377 (570)
T 3b43_A          298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST  377 (570)
T ss_dssp             CSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEE
T ss_pred             CCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEE
Confidence             34567899999999999999999999999999998777665443  334699999999999999999999999988888


Q ss_pred             EEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeee---ceEEEecCCCCCCeEE
Q psy11143        314 MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLY  390 (940)
Q Consensus       314 ~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~---~sL~I~~v~~~D~G~Y  390 (940)
                      .|.|.  .+|.+...|....+.+|++++|.|.+.|.|.|.|+|+|++..+..+.++.+..+   ++|.|.++..+|+|.|
T Consensus       378 ~l~V~--~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y  455 (570)
T 3b43_A          378 SLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY  455 (570)
T ss_dssp             EECEE--CCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             EEEec--CCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEE
Confidence            77775  688888888888899999999999999999999999999999987777776554   3799999999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEEecCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCccc---
Q psy11143        391 RCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQ---  467 (940)
Q Consensus       391 tC~A~N~~G~~~~s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~~---  467 (940)
                      +|.|.|..|.....+.|.|..+|.....      +.......++....    .|.....+.+  +++|++++.....   
T Consensus       456 ~C~A~N~~G~~~~~~~l~v~~~P~~~~~------~~~~~~~~g~~~~l----~c~~~g~p~~--~v~W~k~~~~~~~~~~  523 (570)
T 3b43_A          456 QCKASNDVGSDTCVGSITLKAPPRFVKK------LSDISTVVGEEVQL----QATIEGAEPI--SVAWFKDKGEIVRESD  523 (570)
T ss_dssp             EEEEECSSCEEEEEEEEEECCCCEEEEC------CCCBCCBTTCCEEE----EEEEESCSSC--CCEEEETTEECCCCTT
T ss_pred             EEEEEECCCeEEEEEEEEeccCCccccc------CCCceecCCCeEEE----EEEEecCCCC--EEEEEeCCeEeccCCC
Confidence            9999999999999999999887653322      22223344555433    3444334433  5678887632210   


Q ss_pred             ---cccccceeeee----ccCCccceeeeccchhhhhheeeE
Q psy11143        468 ---QDHGSLMKLLR----FPDESARTVVRAADVYERTLSHIK  502 (940)
Q Consensus       468 ---~~~~~ll~l~r----~p~~~~~~~~~Aa~~fg~t~~~i~  502 (940)
                         ....+-...|.    .+.|.|.|.|.|.+.+|.......
T Consensus       524 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~  565 (570)
T 3b43_A          524 NIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFAT  565 (570)
T ss_dssp             TEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             eEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEE
Confidence               00001111222    245789999999999997754443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=4e-50  Score=482.19  Aligned_cols=399  Identities=28%  Similarity=0.497  Sum_probs=346.1

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEe---CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG   83 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~---~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg   83 (940)
                      ..+|.|.+++.+|+|.|+|.|.|..|.......+.|.   .||.+...|....+.+|+.++|.|.+.|.|++.|+|+|+|
T Consensus       156 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g  235 (570)
T 3b43_A          156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDN  235 (570)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETT
T ss_pred             EEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECC
Confidence            4789999999999999999999999988777777664   4788888888889999999999999999999999999999


Q ss_pred             EeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCC-ceeecCCCcEEEEE
Q psy11143         84 NSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPC  160 (940)
Q Consensus        84 ~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~-~~~v~~Ge~vtL~C  160 (940)
                      ..+....+.++.  .+...|.|.+++.+|+|.|+|.|.|..|.....+.|.|..  +|.+..... ...+.+|+.+.|.|
T Consensus       236 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~--~p~~~~~~~~~~~v~~g~~~~l~C  313 (570)
T 3b43_A          236 REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE--PPRFIKKLEPSRIVKQDEHTRYEC  313 (570)
T ss_dssp             EECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC--CCEEEECCCSBCCEESSCEEEEEE
T ss_pred             EECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec--CCcccccCCCccEEcCCCcEEEEE
Confidence            999877666554  3345689999999999999999999999877777776654  566655443 34678999999999


Q ss_pred             EeCCCCCCeEEEeeCCeeccccCceEEee---eceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCC
Q psy11143        161 KPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV  237 (940)
Q Consensus       161 ~v~g~P~p~ItW~k~g~~i~~~~~~~~~~---~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~  237 (940)
                      .+.|.|.+.+.|++++..+....++....   .+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|. .+|.+...+.
T Consensus       314 ~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~-~~P~~~~~~~  392 (570)
T 3b43_A          314 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-EPPVFRKKPH  392 (570)
T ss_dssp             EEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEE-CCCEECSCCC
T ss_pred             EEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEec-CCCeeecCCC
Confidence            99999999999999999987766654432   3469999999999999999999999999999999998 6788888888


Q ss_pred             eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecC--eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEE
Q psy11143        238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  315 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g--~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l  315 (940)
                      ...+.+|+.+.|.|.+.|.|.|.|+|+|+|..+..+.++.+..++  .+|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus       393 ~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  472 (570)
T 3b43_A          393 PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI  472 (570)
T ss_dssp             CEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence            888999999999999999999999999999999887777765554  459999999999999999999999998887777


Q ss_pred             EEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeec-cCCcEEEee---eceEEEecCCCCCCeEEE
Q psy11143        316 RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHR---TGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       316 ~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~-~~~~~~i~~---~~sL~I~~v~~~D~G~Yt  391 (940)
                      .|.  .+|.+...+.+..+.+|+.+.|.|.+.|.|.|.|.|+|++..+. .+.++.+..   .++|.|.++..+|+|.|+
T Consensus       473 ~v~--~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  550 (570)
T 3b43_A          473 TLK--APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYT  550 (570)
T ss_dssp             EEC--CCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEE
T ss_pred             Eec--cCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEE
Confidence            775  68999998888899999999999999999999999999986654 344555532   358999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEe
Q psy11143        392 CTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       392 C~A~N~~G~~~~s~~L~V~  410 (940)
                      |.|.|..|..+.++.|.|.
T Consensus       551 C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          551 CQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             EEEECSSCEEEEEEEECCB
T ss_pred             EEEEECCcEEEEEEEEEEe
Confidence            9999999999999999875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=7.9e-46  Score=462.69  Aligned_cols=477  Identities=23%  Similarity=0.382  Sum_probs=373.2

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEee
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL   86 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I   86 (940)
                      ..+|+|.+++.+|+|.|+|.|.|..|..+..+.|.|..++.+...|....+.+|+.++|.|.+.|.|.+.|+|+|+|..+
T Consensus       305 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~  384 (816)
T 3dmk_A          305 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI  384 (816)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEEC
T ss_pred             cceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEEC
Confidence            56899999999999999999999999888888899988888888899999999999999999999999999999999988


Q ss_pred             cCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecc-cCCeeEecCCceeecCCCcEEEEEEeCCC
Q psy11143         87 DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGE  165 (940)
Q Consensus        87 ~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~  165 (940)
                      ...        ...|.|.+++.+|+|.|+|.|.|..|.....+.+.|... .+|.+...+....+.+|+.+.|.|.+.|.
T Consensus       385 ~~~--------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~  456 (816)
T 3dmk_A          385 GHS--------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGN  456 (816)
T ss_dssp             SCC--------SSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECS
T ss_pred             CCC--------CCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecC
Confidence            643        245799999999999999999999998777777777653 45677777778889999999999999999


Q ss_pred             CCCeEEEeeCCeeccccCceEEee--------eceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCC
Q psy11143        166 PLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV  237 (940)
Q Consensus       166 P~p~ItW~k~g~~i~~~~~~~~~~--------~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~  237 (940)
                      |.+.++|++++..+....++....        ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|. .+|.+ ..+.
T Consensus       457 p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-~~p~~-~~~~  534 (816)
T 3dmk_A          457 PTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY-GLPYI-RQME  534 (816)
T ss_dssp             SCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEEC-SSCEE-CCCC
T ss_pred             CCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEe-cCCee-EccC
Confidence            999999999999887665554321        2359999999999999999999999999888999988 44433 3455


Q ss_pred             eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeec-cCCCeEEEEEEEeCCCCceeEEEEE
Q psy11143        238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQNSEGSAESVAMIR  316 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~-~~DsG~YtC~A~N~~Gs~~~s~~l~  316 (940)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+....+.....++. |.|.++. ..|+|.|+|.|.|..|.... ..+.
T Consensus       535 ~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~-l~i~~v~~~~d~G~Y~C~a~n~~g~~~~-~~~~  612 (816)
T 3dmk_A          535 KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT-LIIENVERNSDQATYTCVAKNQEGYSAR-GSLE  612 (816)
T ss_dssp             CEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSE-EEESSCCHHHHCEEEEEEEEESSSCEEE-EEEE
T ss_pred             CeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCe-EEEEecCccccCEEEEEEEEECCCceee-eeEE
Confidence            6778899999999999999999999999999998877776666665 9999998 68999999999999886532 2334


Q ss_pred             EeeccCCeEEE-cCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEE
Q psy11143        317 INGHRAPRLVV-KPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLY  390 (940)
Q Consensus       317 V~~~~~P~i~~-~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~Y  390 (940)
                      +.+..+|.+.. .+....+.+|+.++|.|.+.+.|.| .|.|+++|..+..........    .++|.|.++..+|+|.|
T Consensus       613 v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  692 (816)
T 3dmk_A          613 VQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNF  692 (816)
T ss_dssp             EEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEE
T ss_pred             EEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEE
Confidence            43335555443 2345568899999999999877665 999999999886554444432    35799999999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEEecCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCcc----
Q psy11143        391 RCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNE----  466 (940)
Q Consensus       391 tC~A~N~~G~~~~s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~----  466 (940)
                      +|.|.|..|....++.|.|..+|.....|      .......++...    ..|.....+..  +++|.+++....    
T Consensus       693 ~C~a~N~~g~~~~~~~l~V~~~P~~~~~~------~~~~v~~G~~v~----l~C~~~g~P~p--~i~W~k~~~~~~~~~~  760 (816)
T 3dmk_A          693 TCHARNLAGHQQFTTPLNVYVPPRWILEP------TDKAFAQGSDAK----VECKADGFPKP--QVTWKKAVGDTPGEYK  760 (816)
T ss_dssp             EEEEECSSCEEEEEEEECEEEEEEEEECC------CCEEEETTCCEE----EECEEEEESCC--EEECCEECSSSTTCCB
T ss_pred             EEEEEeCCccEEEEEEEEEEeCCceeeec------ccceecCCCcEE----EEEEEecCCCC--eEEEEecCCCCCcccc
Confidence            99999999999999999998876532222      111222344433    34444444433  678888753211    


Q ss_pred             cc--------ccccceeeeeccCCccceeeeccchhhhhheeeEEEEee
Q psy11143        467 QQ--------DHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQA  507 (940)
Q Consensus       467 ~~--------~~~~ll~l~r~p~~~~~~~~~Aa~~fg~t~~~i~~~v~~  507 (940)
                      ..        ..+.|...-....+.|.|.|.|.+.+|.....+..++++
T Consensus       761 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~  809 (816)
T 3dmk_A          761 DLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ  809 (816)
T ss_dssp             CCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEE
T ss_pred             ccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEee
Confidence            00        011121111123477999999999999987766555443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=3.6e-45  Score=444.42  Aligned_cols=465  Identities=18%  Similarity=0.310  Sum_probs=353.7

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCceE-EEEEEEEEeCCC-eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCE
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAGVY-RGDLHVTVNAPP-IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN   84 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~-~~~v~l~V~~pP-~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~   84 (940)
                      ..+|+|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+| .+...|....+.+|+.++|.|.+.|+|.+.|+|+++|.
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~  242 (642)
T 1e07_A          163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGT  242 (642)
T ss_pred             CCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCe
Confidence            5689999999999999999999988754 455778887443 45566777889999999999999999999999999999


Q ss_pred             eecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEE--EEEEEecccCCeeEecCCceeecCCCcEEEEEEe
Q psy11143         85 SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV--AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP  162 (940)
Q Consensus        85 ~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~--~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v  162 (940)
                      .+..         +..|.|.+++.+|+|.|+|.|.|..|.....  ..|.|...+.+.+...+....+..|+++.|.|.+
T Consensus       243 ~i~~---------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~  313 (642)
T 1e07_A          243 FQQS---------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP  313 (642)
T ss_pred             Eccc---------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEEC
Confidence            8742         2347999999999999999999998876653  4455544333233333444556668889999999


Q ss_pred             CCCCCCeEEEeeCCeeccccCceEEe-eeceEEEeecccCCCceEEEEEEcCCcce-eeeeeeeecCCCCeeeeCCCeeE
Q psy11143        163 DGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVTGAPPIFIQRPVSTT  240 (940)
Q Consensus       163 ~g~P~p~ItW~k~g~~i~~~~~~~~~-~~~sL~I~~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~~~p~~~~~p~~~~  240 (940)
                      .+.| +.++|+++|..+....+..+. .++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|+.....+....
T Consensus       314 ~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~  392 (642)
T 1e07_A          314 EIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY  392 (642)
T ss_pred             CCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceE
Confidence            9876 699999999988766665543 34689999999999999999999998864 45677888765655566677778


Q ss_pred             EecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeec
Q psy11143        241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH  320 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~  320 (940)
                      +.+|+.+.|.|.+.|.|.|.++|+++|..+...         ..|.|.++..+|+|.|+|.|.|..|....+..+.|.+.
T Consensus       393 ~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~---------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~  463 (642)
T 1e07_A          393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS  463 (642)
T ss_pred             ecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC---------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEe
Confidence            899999999999999999999999999887542         34999999999999999999999988776544444332


Q ss_pred             ---cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee-eceEEEecCCCCCCeEEEEEEEe
Q psy11143        321 ---RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ---~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                         .+|.+.. +....+.+|++++|.|.+.+ |.+.+.|+|+|..+....++.+.. +++|.|.++..+|+|.|+|.|.|
T Consensus       464 ~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  541 (642)
T 1e07_A          464 AELPKPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQN  541 (642)
T ss_pred             ccCCCceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEc
Confidence               2444443 44567889999999999994 888999999999988777776654 45899999999999999999999


Q ss_pred             CCeeEEE-EEEEEEecCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCcccccccccee
Q psy11143        397 LLGEDVA-EGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMK  475 (940)
Q Consensus       397 ~~G~~~~-s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~~~~~~~ll~  475 (940)
                      ..|.... .+.|.|..+|..+..     .+.......++..    ...|....++..  +++|++++.+...  .+.|..
T Consensus       542 ~~g~~~s~~~~l~V~~~p~~~~~-----~~~~~~v~~g~~~----~l~C~~~g~p~p--~v~W~~~g~~i~~--~~~L~i  608 (642)
T 1e07_A          542 SVSANRSDPVTLDVLYGPDTPII-----SPPDSSYLSGANL----NLSCHSASNPSP--QYSWRINGIPQQH--TQVLFI  608 (642)
T ss_pred             CCCCccCCCEEEEEEeCCCccee-----cCCceeEEcCCcE----EEEEEeccCCCC--eEEEEECCEECcc--CceEEE
Confidence            9997654 688999865432111     1112222334433    334555444443  7889999865531  122222


Q ss_pred             eeeccCCccceeeeccchhhhhheeeEEEE
Q psy11143        476 LLRFPDESARTVVRAADVYERTLSHIKKHI  505 (940)
Q Consensus       476 l~r~p~~~~~~~~~Aa~~fg~t~~~i~~~v  505 (940)
                      .-..+.+.|.|.|.|.+.+|.........|
T Consensus       609 ~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V  638 (642)
T 1e07_A          609 AKITPNNNGTYACFVSNLATGRNNSIVKSI  638 (642)
T ss_pred             CcccccCCeEEEEEEEecccCcceeEEEEE
Confidence            222345789999999999998765444443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=6.4e-44  Score=433.39  Aligned_cols=459  Identities=20%  Similarity=0.270  Sum_probs=340.4

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCC-ceEEEEEEEEEeC---CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPA-GVYRGDLHVTVNA---PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD   82 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~-g~~~~~v~l~V~~---pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd   82 (940)
                      +.+|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..   +|.+.. +....+.+|+.+.|.|.+.+ |.+.|.|+++
T Consensus        70 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~  147 (642)
T 1e07_A           70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVN  147 (642)
T ss_pred             CCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEEC
Confidence            4689999999999999999999864 4445566677765   445444 33566889999999999998 8899999999


Q ss_pred             CEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEE
Q psy11143         83 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK  161 (940)
Q Consensus        83 g~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~  161 (940)
                      |..+....+..+...+..|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|...+. ...+.+....+.+|+.+.|.|.
T Consensus       148 g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~-~~~~~~~~~~~~~G~~~~l~C~  226 (642)
T 1e07_A          148 NQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPD-APTISPLNTSYRSGENLNLSCH  226 (642)
T ss_pred             CeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCC-CcEEecCCcccccCCEEEEEEE
Confidence            999987777776666677899999999999999999998886543 56677764332 3345566778899999999999


Q ss_pred             eCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceee--eeeeeecCCCC-eeeeCCCe
Q psy11143        162 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA--EGYLTVTGAPP-IFIQRPVS  238 (940)
Q Consensus       162 v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~--s~~L~V~~~~p-~~~~~p~~  238 (940)
                      +.|.|.+.++|+++|..+..        ...|.|.+++.+|+|.|+|.|.|..|....  ...|.|...++ .....+..
T Consensus       227 ~~g~p~~~i~W~~~g~~i~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~  298 (642)
T 1e07_A          227 AASNPPAQYSWFVNGTFQQS--------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNS  298 (642)
T ss_pred             cCCCCCcEEEEEECCeEccc--------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCc
Confidence            99999999999999987632        357999999999999999999998886543  44566654322 22223344


Q ss_pred             eEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce-eEEEEEE
Q psy11143        239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE-SVAMIRI  317 (940)
Q Consensus       239 ~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~-~s~~l~V  317 (940)
                      ..+..|+.+.|.|.+.+.| +.++|+++|..+....++.+...+..|.|.++..+|+|.|+|.|.|..|... ..+.|.|
T Consensus       299 ~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  377 (642)
T 1e07_A          299 NPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV  377 (642)
T ss_pred             eeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEE
Confidence            4566688899999999987 7999999999998887877776677799999999999999999999998753 3456666


Q ss_pred             eeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       318 ~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .. .|+.+...+....+.+|+.++|.|.+.|.|.|.|+|+++|..+..        ...|.|.++..+|+|.|+|.|.|.
T Consensus       378 ~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~  448 (642)
T 1e07_A          378 LY-GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH--------TQELFISNITEKNSGLYTCQANNS  448 (642)
T ss_pred             Ec-CCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC--------CceEEEccCChhhCeEEEEEEEcC
Confidence            53 233344556677889999999999999999999999999987643        346999999999999999999999


Q ss_pred             CeeEEEEEE--EEEecCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCcccc-----c-
Q psy11143        398 LGEDVAEGY--LTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQ-----D-  469 (940)
Q Consensus       398 ~G~~~~s~~--L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~~~-----~-  469 (940)
                      .|....+..  |.|..++.   .|.... ........++....    .|... .+  ..++.|++++.+....     . 
T Consensus       449 ~g~~~~s~~~~v~v~~~~~---~p~i~~-~~~~~v~~g~~v~l----~C~~~-~~--~~~i~W~~~g~~l~~~~~~~~~~  517 (642)
T 1e07_A          449 ASGHSRTTVKTITVSAELP---KPSISS-NNSKPVEDKDAVAF----TCEPE-AQ--NTTYLWWVNGQSLPVSPRLQLSN  517 (642)
T ss_pred             CCCCcccceEEEEEeccCC---CceEec-CCceeecCCCeEEE----EEECC-CC--CcEEEEEECCEeCCCCCcEEEcC
Confidence            998776644  44443221   111111 11111223444333    34443 22  3578899988544210     0 


Q ss_pred             cccceeeee-ccCCccceeeeccchhhhh
Q psy11143        470 HGSLMKLLR-FPDESARTVVRAADVYERT  497 (940)
Q Consensus       470 ~~~ll~l~r-~p~~~~~~~~~Aa~~fg~t  497 (940)
                      .+.-+.+.. ...+.|.|.|.|.+..|..
T Consensus       518 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  546 (642)
T 1e07_A          518 GNRTLTLFNVTRNDARAYVCGIQNSVSAN  546 (642)
T ss_pred             CCcEEEEeecChhcCceEEEEeEcCCCCc
Confidence            011122222 2347799999999888754

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=2.5e-45  Score=434.87  Aligned_cols=397  Identities=17%  Similarity=0.281  Sum_probs=303.1

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE-CCE
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGN   84 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k-dg~   84 (940)
                      ...+|+|.+++.+|+|.|+|.+.|  |. +..+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+.|+|++ +|.
T Consensus        78 ~~~~L~I~~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~  154 (524)
T 2ec8_A           78 KQNEWITEKAEATNTGKYTCTNKH--GL-SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGK  154 (524)
T ss_dssp             CSSEEEESSCCSTTCEEEEEEETT--SC-EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSC
T ss_pred             ccceEEEcccchhhCEEEEEeecC--Cc-ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCc
Confidence            468999999999999999999999  43 66788888888777777888899999999999999987778999998 888


Q ss_pred             eecCCCCeEEEeeceEEEEcccccCCCe-EEEEEEEeCCCceEE-EEEEEEec--ccCCeeEecCCceeecCCCcEEEEE
Q psy11143         85 SLDSDDHVTYEHDGFVLVLNGVRESDAG-VYNCVAQNSEGSAES-VAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPC  160 (940)
Q Consensus        85 ~I~~~~~~~~~~~gs~L~I~~v~~~DsG-~YtC~a~n~~g~~~~-~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C  160 (940)
                      .+....+..+...+ .|.|.+++.+|+| .|+|.|.|..+...+ .+.|.|..  ..+|.+...+....+.+|++++|.|
T Consensus       155 ~l~~~~~~~~~~~~-~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C  233 (524)
T 2ec8_A          155 PLPKDLRFIPDPKA-GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTC  233 (524)
T ss_dssp             CCCSSCEEEEETTT-EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEE
T ss_pred             CcCCCCceeECCCc-cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEE
Confidence            88765555554444 4699999999999 999999998776544 66676652  2457888888888999999999999


Q ss_pred             EeCCCCCCe-EEEeeCCeec--cccCce------EEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCe
Q psy11143        161 KPDGEPLPR-ISWSKDEAEF--VEDRNH------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI  231 (940)
Q Consensus       161 ~v~g~P~p~-ItW~k~g~~i--~~~~~~------~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~  231 (940)
                      .+.+.|.+. ++|++++..+  ......      .....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|. .+|.
T Consensus       234 ~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~-~~p~  312 (524)
T 2ec8_A          234 TIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV-DKGF  312 (524)
T ss_dssp             EEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEE-SSCE
T ss_pred             EEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEe-ccCc
Confidence            999988886 9999998873  322211      23345689999999999999999999999998889999998 5555


Q ss_pred             eeeCC---CeeEEecCCeEEEEEEEeeeCCCe-EEEEECCeecCCCC-ceEEeec------CeEEEEeeeccCCCeEEEE
Q psy11143        232 FIQRP---VSTTYSTGSTSRITCLVEGHPLPQ-MTWFHDGNSLDSDD-HVTYEHD------GFVLVLNGVRESDAGVYNC  300 (940)
Q Consensus       232 ~~~~p---~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k~g~~l~~~~-~~~~~~~------g~sL~I~~v~~~DsG~YtC  300 (940)
                      +...+   ....+.+|+.++|.|.+.|.|.|. ++|+++|..+.... ++....+      ..+|.|.++..+|+|.|+|
T Consensus       313 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  392 (524)
T 2ec8_A          313 INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTF  392 (524)
T ss_dssp             EEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEE
T ss_pred             eEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEE
Confidence            55433   467899999999999999999998 99999999887665 2222222      2469999999999999999


Q ss_pred             EEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeec--------cCCc---E
Q psy11143        301 VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV--------EDRN---H  369 (940)
Q Consensus       301 ~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~--------~~~~---~  369 (940)
                      .|.|..|....++.|.|.  .+|.+...+.   ..+|   +|.|.+.|.|.|.|+|++++..+.        .+.+   .
T Consensus       393 ~a~N~~g~~~~~~~l~V~--~~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~  464 (524)
T 2ec8_A          393 LVSNSDVNAAIAFNVYVN--TKPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNS  464 (524)
T ss_dssp             EEECSSCEEEEEEEEEEC--EEEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC
T ss_pred             EEEecCceEEEEEEEEEe--cCCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeee
Confidence            999999998777777775  5787776553   3455   999999999999999999976652        1111   2


Q ss_pred             EEeeeceEEE---ecC-CCCCCeEEEEEEEeCCeeEEEEEEEEEecCCCC
Q psy11143        370 KIHRTGSLRL---YNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV  415 (940)
Q Consensus       370 ~i~~~~sL~I---~~v-~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~  415 (940)
                      .....+.+.+   .++ ..+|+|.|+|.|.|..|.....+.|.|++.+..
T Consensus       465 ~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~  514 (524)
T 2ec8_A          465 SGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE  514 (524)
T ss_dssp             -CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC------
T ss_pred             ccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHH
Confidence            2233455543   334 359999999999999999999999999987643

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=6.5e-44  Score=445.38  Aligned_cols=401  Identities=26%  Similarity=0.487  Sum_probs=333.9

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEE---eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV---NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD   82 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V---~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd   82 (940)
                      +..+|.|.+++.+|+|.|+|.|.|..|.......+.|   ..+|.+...+....+.+|+.+.|.|.+.|+|.+.|+|+++
T Consensus       387 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~  466 (816)
T 3dmk_A          387 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD  466 (816)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEET
T ss_pred             CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEEC
Confidence            4578999999999999999999999998777777777   3678888888888999999999999999999999999999


Q ss_pred             CEeecCCCCeEEE----eec---eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCc
Q psy11143         83 GNSLDSDDHVTYE----HDG---FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS  155 (940)
Q Consensus        83 g~~I~~~~~~~~~----~~g---s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~  155 (940)
                      |..+.........    .++   ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|..  .| +...+....+.+|++
T Consensus       467 g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~--~p-~~~~~~~~~v~~G~~  543 (816)
T 3dmk_A          467 GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG--LP-YIRQMEKKAIVAGET  543 (816)
T ss_dssp             TEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECS--SC-EECCCCCEEEETTCC
T ss_pred             CEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEec--CC-eeEccCCeEEecCCe
Confidence            9999776665443    112   3589999999999999999999999888888888865  33 344555677889999


Q ss_pred             EEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecc-cCCCceEEEEEEcCCcc-eeeeeeeeecCCCCeee
Q psy11143        156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG-PQDSGLYRCTASNLLGE-DVAEGYLTVTGAPPIFI  233 (940)
Q Consensus       156 vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~-~~DsG~YtC~a~N~~g~-~s~s~~L~V~~~~p~~~  233 (940)
                      +.|.|.+.+.|.+.+.|++++..+....+.....+++|.|.++. .+|+|.|+|.|.|..|. .+....+.|...+....
T Consensus       544 v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~  623 (816)
T 3dmk_A          544 LIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIP  623 (816)
T ss_dssp             EEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBC
T ss_pred             EEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCcccc
Confidence            99999999999999999999999887777777778899999998 68999999999999885 34466677764444333


Q ss_pred             eCCCeeEEecCCeEEEEEEEeeeCCC-eEEEEECCeecCCCCceEEee---cCeEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEH---DGFVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~P~p-~ItW~k~g~~l~~~~~~~~~~---~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ..+....+..|+.++|.|.+.+.|.+ .|+|+++|..+..........   ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       624 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  703 (816)
T 3dmk_A          624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ  703 (816)
T ss_dssp             CCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             ccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccE
Confidence            44455678899999999999876655 999999999987555444332   23469999999999999999999999998


Q ss_pred             eeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc-------CCcEEEeeeceEEEecC
Q psy11143        310 ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE-------DRNHKIHRTGSLRLYNI  382 (940)
Q Consensus       310 ~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~-------~~~~~i~~~~sL~I~~v  382 (940)
                      ..++.|.|.  .+|.+...+.+..+.+|++++|.|.+.|.|.|.|+|+|++..+..       ..+.. ..+++|.|.++
T Consensus       704 ~~~~~l~V~--~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v  780 (816)
T 3dmk_A          704 QFTTPLNVY--VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR-VEEGTLHVDNI  780 (816)
T ss_dssp             EEEEEECEE--EEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEE-EETTEEEECSC
T ss_pred             EEEEEEEEE--eCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEE-ecCCEEEECcC
Confidence            888777775  588899888888999999999999999999999999998754321       22332 35679999999


Q ss_pred             CCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        383 GPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       383 ~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      +.+|+|.|+|.|.|..|....++.+..+..
T Consensus       781 ~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~~  810 (816)
T 3dmk_A          781 QKTNEGYYLCEAINGIGSGLSAVIMISVQA  810 (816)
T ss_dssp             CGGGCEEEEEEEECSSSSCEEEEEEEEEEC
T ss_pred             ChhhCeEEEEEEEeCCCCCcEEEEEEEeec
Confidence            999999999999999999999988877654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-43  Score=404.02  Aligned_cols=368  Identities=23%  Similarity=0.468  Sum_probs=302.3

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCC--CeEEEeeceEEEEccc-----ccCCCeEE
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGV-----RESDAGVY  114 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v-----~~~DsG~Y  114 (940)
                      .....+..+|.++.+.+|+.++|.|.+.+ .|.+.|.|+|+|..+....  +.....++. |.|.++     +.+|+|.|
T Consensus        19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~-l~i~~~~~~~~~~~D~G~Y   97 (403)
T 3laf_A           19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS-LLIQNILHSRHHKPDEGLY   97 (403)
T ss_dssp             CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSC-EEECSCCCBTTBCSSCEEE
T ss_pred             ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCc-EEEeeeeccCCCCCcceEE
Confidence            34567888999999999999999999987 6788999999999986542  333334444 477777     77899999


Q ss_pred             EEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeecc---ccCceEEeeec
Q psy11143        115 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV---EDRNHKIHRTG  191 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~---~~~~~~~~~~~  191 (940)
                      +|.+.+..+.......+.+....+|.+...+....+.+|+++.|.|.+.+.|.+.++|++++..+.   ...+.....++
T Consensus        98 ~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  177 (403)
T 3laf_A           98 QCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG  177 (403)
T ss_dssp             EEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTS
T ss_pred             EEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCc
Confidence            999997655444333333333346677777788899999999999999999999999999988774   33444555567


Q ss_pred             eEEEeecccCCCceEEEEEEcCCcce-eeeeeeeecCCCC-----eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEE
Q psy11143        192 SLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVTGAPP-----IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH  265 (940)
Q Consensus       192 sL~I~~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~~~p-----~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k  265 (940)
                      .|.|.+++.+|+|.|+|.+.|..+.. .....+.|...+.     .+...+....+.+|+.++|.|.+.+.|.+.+.|++
T Consensus       178 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  257 (403)
T 3laf_A          178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR  257 (403)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEE
T ss_pred             eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEE
Confidence            89999999999999999999987763 3456666664331     34456677888999999999999999999999999


Q ss_pred             CCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEe
Q psy11143        266 DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK  345 (940)
Q Consensus       266 ~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~  345 (940)
                      ++..+...........+..|.|.++..+|+|.|+|.|.|..|....++.|.|.  .+|.+...+.+..+.+|++++|.|.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~--~~p~~~~~~~~~~~~~g~~v~l~C~  335 (403)
T 3laf_A          258 GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL--VPPWFLNHPSNLYAYESMDIEFECA  335 (403)
T ss_dssp             TTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE--EEEEEEECCCCEECCTTCCEEECCE
T ss_pred             CCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE--CCCcEeecCcceEEecCCeEEEEEE
Confidence            99988765444434445569999999999999999999999988777777775  5788888888888999999999999


Q ss_pred             ecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       346 v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      +.|.|.|.|.|+++|..+....++.+...++|.|.++..+|+|.|+|.|.|..|....++.|.|++|+
T Consensus       336 ~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          336 VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             EEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             EeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            99999999999999999988888887778899999999999999999999999999999999998763

>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...

Probab=100.00  E-value=4.1e-47  Score=446.41  Aligned_cols=250  Identities=35%  Similarity=0.676  Sum_probs=215.4

Q ss_pred             cceeeeccchhhhhheeeEEEEeecc--cccccccccccccccCcccccccCCCCchhhccccCcCccCCCCccccHHHH
Q psy11143        484 ARTVVRAADVYERTLSHIKKHIQAGV--KMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELT  561 (940)
Q Consensus       484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (940)
                      .++| .||+||||+++.-........  .....+.+.|.++||+|+.++.++|+|++++||+.|+++....+.+++++|+
T Consensus       340 ~neF-~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~L~~~ff~~~~~~~~~gid~llrGl~~q~a~~~~~d~~~~~~l~  418 (595)
T 3q9k_A          340 SNVF-TFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELR  418 (595)
T ss_dssp             BTTH-HHHGGGGGGGCCSEEECBCTTSSBCSTTCEEEGGGGBTCCHHHHTTTCSHHHHHHHHHSEEECCCTTSCSCHHHH
T ss_pred             HHHH-HHHHHhHHhhCcchhhccCccccccCCCCceeHHHHhcChHHhhhccchHHHHHHHhhCcccccCCCccCCHHHH
Confidence            5788 899999999954322211111  1112347899999999999999999999999999999996667899999999


Q ss_pred             Hhhhccccch-hhhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChh
Q psy11143        562 DKLFTTFHAV-SLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPR  640 (940)
Q Consensus       562 ~~~~~~~~~~-~~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (940)
                      ++||+..+.. ++||+|+|||||||||||+||+||++|||+++++|+||+..+.++.++++|+++|++++          
T Consensus       419 ~~Lf~~~~~~~g~DL~alnIqRgRdhGlp~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~~l~~lY~~~d----------  488 (595)
T 3q9k_A          419 NKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPD----------  488 (595)
T ss_dssp             TCEECTTSCSEEECHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGG----------
T ss_pred             HHhccCCCccccccHHHHHHHHHHHhCCCCHHHHHHHcCCCCCCCHHHHhhhcCcHHHHHHHHHHhCCcc----------
Confidence            9999988777 99999999999999999999999999999999999999999999999999999999887          


Q ss_pred             HHHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCC
Q psy11143        641 QIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNID  720 (940)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  720 (940)
                                                                                                   +  
T Consensus       489 -----------------------------------------------------------------------------~--  489 (595)
T 3q9k_A          489 -----------------------------------------------------------------------------N--  489 (595)
T ss_dssp             -----------------------------------------------------------------------------G--
T ss_pred             -----------------------------------------------------------------------------c--
Confidence                                                                                         4  


Q ss_pred             cccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCccccce
Q psy11143        721 PFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAI  800 (940)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (940)
                                                                                              ||||||||
T Consensus       490 ------------------------------------------------------------------------iDl~vG~l  497 (595)
T 3q9k_A          490 ------------------------------------------------------------------------IDIWIGGN  497 (595)
T ss_dssp             ------------------------------------------------------------------------SCHHHHHH
T ss_pred             ------------------------------------------------------------------------cceeeccc
Confidence                                                                                    45999999


Q ss_pred             eccccCCCCCCcchhhhhhhhhhhcccCCcccccCCCCCChhHHhHhhhceeeeeeecCCCceeeEEEeecCCCCccccC
Q psy11143        801 LEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITP  880 (940)
Q Consensus       801 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  880 (940)
                      +|+++||+++||||.|||++||.|||+||||||||++.||++||+||++++|++|||+|+ .+++||            +
T Consensus       498 ~E~~~~g~~~Gptf~~ii~~qf~~lr~gDRf~yen~~~ft~~ql~ei~~~sla~iic~n~-~i~~vq------------~  564 (595)
T 3q9k_A          498 AEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNT-HITKVP------------L  564 (595)
T ss_dssp             HSCCCTTBSSCHHHHHHHHHHHHHHHHTCTTCTTSBTTBCHHHHHHHTTCCHHHHHHHHS-SCCEEE------------S
T ss_pred             ccccCCCCCcCHHHHHHHHHHHHHHHhcCCCeecCCCcCCHHHHHHHHhCCHHHHHhcCC-Cccccc------------H
Confidence            999999999999999999999999999999999999999999999999999999999995 599998            6


Q ss_pred             CCceecccccccceecCCCCCCccccccccccC
Q psy11143        881 DPVITHMVMQWGQFLDHDLDHAIPATSLESWEG  913 (940)
Q Consensus       881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  913 (940)
                      |+|...-  .-+.++..+   .+|..+++.|..
T Consensus       565 ~~F~~~~--~~n~~v~C~---~ip~~dL~~W~~  592 (595)
T 3q9k_A          565 HAFQANN--YPHDFVDCS---TVDKLDLSPWAS  592 (595)
T ss_dssp             STTSCCC--TTTTEEEGG---GSCCCCCGGGCC
T ss_pred             hhccCCC--CCCCCccCC---CCCCCChHHhhC
Confidence            6544211  112445443   589999999963

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=2.5e-42  Score=414.23  Aligned_cols=396  Identities=19%  Similarity=0.304  Sum_probs=308.4

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCE
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGN   84 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~   84 (940)
                      +..+|+|.+++.+|+|.|+|.|.|..+..+..+.|.|..+|.+...+....+.+|+.++|.|.+.+. |.+.|.|+|++.
T Consensus        73 g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~  152 (585)
T 2ocw_A           73 GTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIG  152 (585)
T ss_pred             CEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCC
Confidence            3468999999999999999999998888888899999999999888999999999999999999864 457899999986


Q ss_pred             eec-------------CCCCeEEEeece-----EEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCC
Q psy11143         85 SLD-------------SDDHVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF  146 (940)
Q Consensus        85 ~I~-------------~~~~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~  146 (940)
                      .+.             ...+..+..++.     .|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+       |.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-------p~  225 (585)
T 2ocw_A          153 LYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-------PE  225 (585)
T ss_pred             CCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC-------Cc
Confidence            421             023444443332     68999999999999999999999987778888886532       33


Q ss_pred             ceeecCCCcEEEEEEeCCCCC---CeEEEe-eCCee---ccc---------cCceEEee---ec--eEEEeecccCCCce
Q psy11143        147 DMRAPAGSSVEIPCKPDGEPL---PRISWS-KDEAE---FVE---------DRNHKIHR---TG--SLRLYNIGPQDSGL  205 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~v~g~P~---p~ItW~-k~g~~---i~~---------~~~~~~~~---~~--sL~I~~v~~~DsG~  205 (940)
                      ...+.+|+.+.|.|.+. .+.   +.+.|+ +++..   +..         ..++.+..   ++  .|.|.+++.+|+|.
T Consensus       226 ~~~~~~G~~v~l~C~~~-~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~  304 (585)
T 2ocw_A          226 LVYEDLRGSVTFHCALG-PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGR  304 (585)
T ss_pred             eeEEcCCCcEEEEEEcC-CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEE
Confidence            44678999999999974 443   678887 77732   111         22333321   33  69999999999999


Q ss_pred             EEEEEEcCCcce----eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeE----EEEE--CCe--ecCC-
Q psy11143        206 YRCTASNLLGED----VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM----TWFH--DGN--SLDS-  272 (940)
Q Consensus       206 YtC~a~N~~g~~----s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~I----tW~k--~g~--~l~~-  272 (940)
                      |+|.|.|..+..    ...+.|.|. .+|.+...+....+.+|+.+.|.|.+.+.|.|.+    +|++  +|.  .+.. 
T Consensus       305 Y~C~a~n~g~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~  383 (585)
T 2ocw_A          305 YLCGAHSDGQLQEGSPIQAWQLFVN-EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDS  383 (585)
T ss_pred             EEEEEEcCCCccccCceeeEEEEEe-cccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeee
Confidence            999999953333    167778887 5666667778888999999999999999999977    7999  886  4422 


Q ss_pred             --------CCceEEee---cC-eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeE
Q psy11143        273 --------DDHVTYEH---DG-FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV  340 (940)
Q Consensus       273 --------~~~~~~~~---~g-~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~v  340 (940)
                              ..++.+..   ++ .+|.|.++..+|+|.|+|.| |..|.....+.|.|.. .+|.+. .+....+.+|+++
T Consensus       384 ~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~-~~p~~~-~~~~~~v~~G~~v  460 (585)
T 2ocw_A          384 EGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIE-GEPNLK-VPGNVTAVLGETL  460 (585)
T ss_pred             cceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEec-Cccccc-cCCceeEecCCcE
Confidence                    23444432   22 24999999999999999999 9989888888888764 344444 3677889999999


Q ss_pred             EEEEeec----CcCCCeEEEEeCCeeeccCCc-------EEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEE-EE
Q psy11143        341 EIPCKPD----GEPLPRISWSKDEAEFVEDRN-------HKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EG  405 (940)
Q Consensus       341 tL~C~v~----g~P~p~i~W~k~g~~i~~~~~-------~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~  405 (940)
                      +|.|.+.    +.|.|.|.|+|+|..+.....       ..+..   .++|.|.++..+|+|.|+|.|.|..|.... .+
T Consensus       461 ~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  540 (585)
T 2ocw_A          461 KVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAV  540 (585)
T ss_pred             EEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEE
Confidence            9999997    778889999999987753321       11111   248999999999999999999999997665 48


Q ss_pred             EEEEecCC
Q psy11143        406 YLTVTGEN  413 (940)
Q Consensus       406 ~L~V~~~~  413 (940)
                      .|.|++++
T Consensus       541 ~l~V~~~p  548 (585)
T 2ocw_A          541 YVAVEERK  548 (585)
T ss_pred             EEEEEeee
Confidence            99999876

>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*

Probab=100.00  E-value=9.8e-47  Score=434.39  Aligned_cols=249  Identities=38%  Similarity=0.728  Sum_probs=214.4

Q ss_pred             cceeeeccchhhhhheeeEEEEeecc--cccccccccccccccCcccccccCCCCchhhccccCcCccCCCCccccHHHH
Q psy11143        484 ARTVVRAADVYERTLSHIKKHIQAGV--KMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELT  561 (940)
Q Consensus       484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (940)
                      .++| .||+||||+++.-........  .....+.+.|.++||+|+.++.+++++++++||+.|+++....+.+++++|+
T Consensus       213 snEF-~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~g~d~~lrgl~~q~a~~~~~d~~l~~~l~  291 (466)
T 1d2v_C          213 ANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIR  291 (466)
T ss_dssp             BHHH-HHHGGGGGGGCCSEEECBCTTSSBCSSCSEEEGGGTTTCHHHHHHTTCHHHHHHHHHHSEEECCBTTBCSCHHHH
T ss_pred             hHHH-HHHHhcccccCchhhccccccccccCCCCceeHHHHhcChHHHhhccCchHHHHHHhhCccccccCchhhhHHHH
Confidence            5689 899999999964322211111  1112246889999999999999999999999999999986556889999999


Q ss_pred             HhhhccccchhhhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChhH
Q psy11143        562 DKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQ  641 (940)
Q Consensus       562 ~~~~~~~~~~~~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (940)
                      ++||+..+..++||+|+|||||||||||+||+||++|||+++++|+||+++|.|++++++|+++|++|+           
T Consensus       292 ~~lf~~~~~~~~DL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~~~~d~~~~~~L~~lY~~~d-----------  360 (466)
T 1d2v_C          292 ERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPN-----------  360 (466)
T ss_dssp             TCBTGGGSSSCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGG-----------
T ss_pred             HHhhcccCccchhHHHHHHHHHHHcCCCCHHHHHHHcCCCCCCCHHHHhhccCCHHHHHHHHHHhCCcc-----------
Confidence            999999888899999999999999999999999999999999999999999999999999999999887           


Q ss_pred             HHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCCc
Q psy11143        642 IELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDP  721 (940)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  721 (940)
                                                                                                  +   
T Consensus       361 ----------------------------------------------------------------------------~---  361 (466)
T 1d2v_C          361 ----------------------------------------------------------------------------N---  361 (466)
T ss_dssp             ----------------------------------------------------------------------------G---
T ss_pred             ----------------------------------------------------------------------------c---
Confidence                                                                                        4   


Q ss_pred             ccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCcccccee
Q psy11143        722 FVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAIL  801 (940)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (940)
                                                                                             ||||||+|+
T Consensus       362 -----------------------------------------------------------------------vDL~vG~la  370 (466)
T 1d2v_C          362 -----------------------------------------------------------------------IDIWMGGVS  370 (466)
T ss_dssp             -----------------------------------------------------------------------SCHHHHHHH
T ss_pred             -----------------------------------------------------------------------cceeecccc
Confidence                                                                                   459999999


Q ss_pred             ccccCCCCCCcchhhhhhhhhhhcccCCcccccCCCCCChhHHhHhhhceeeeeeecCCCceeeEEEeecCCCCccccCC
Q psy11143        802 EDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPD  881 (940)
Q Consensus       802 e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  881 (940)
                      |+++||+++||||.|||++||.|||+||||||+|++.||+.||+||++++|++|||+|+ .+++||            +|
T Consensus       371 E~~~~G~~~Gptf~~ii~~qf~rLr~gDRf~yen~~~ft~~ql~ei~~~sl~~iic~n~-~~~~iq------------~~  437 (466)
T 1d2v_C          371 EPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNT-GITTVS------------KN  437 (466)
T ss_dssp             SCCCTTCSSCHHHHHHHHHHHHHHHHTCTTCTTSTTTSCHHHHHHHTTCCHHHHHHHHS-SCCEEE------------CS
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHhcCcccccCCCcccchhhHHHHhCCHHHHHHhcC-CCcccC------------CC
Confidence            99999999999999999999999999999999999999999999999999999999999 588998            55


Q ss_pred             -CceecccccccceecCCCCCCcccccccccc
Q psy11143        882 -PVITHMVMQWGQFLDHDLDHAIPATSLESWE  912 (940)
Q Consensus       882 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (940)
                       +|...-.  .+.++..+   .+|..+++.|.
T Consensus       438 ~~F~~~~~--~n~~~~C~---~ip~~dl~~w~  464 (466)
T 1d2v_C          438 NIFMSNSY--PRDFVNCS---TLPALNLASWR  464 (466)
T ss_dssp             CTTTCCST--TTTEEEGG---GSCCCCCGGGS
T ss_pred             ccccCCCC--CCCCcCcc---cCCCCCchhhc
Confidence             4432211  12444443   58999999995

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=6e-43  Score=414.41  Aligned_cols=444  Identities=14%  Similarity=0.172  Sum_probs=322.5

Q ss_pred             EcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc
Q psy11143         28 GNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR  107 (940)
Q Consensus        28 ~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~  107 (940)
                      .+..|.....+.|.|..||.+...+....+.+|+.++|.|.+.+    .|+|+|++..+.      .......|.|.+++
T Consensus        19 ~~~~g~~~~~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~------~~~~~~~L~I~~~~   88 (524)
T 2ec8_A           19 RVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET------NENKQNEWITEKAE   88 (524)
T ss_dssp             --------------CCCCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC------EEECSSEEEESSCC
T ss_pred             hhhcCCCCCeEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc------ccCccceEEEcccc
Confidence            34455566677889999999998888999999999999999987    899999998762      23445668999999


Q ss_pred             cCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEee-CCeeccccCceE
Q psy11143        108 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHK  186 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k-~g~~i~~~~~~~  186 (940)
                      .+|+|.|+|.+.|  |. ...+.|.|..  +|.+...+....+.+|+.+.|.|.+.+.|.+.++|++ ++..+....++.
T Consensus        89 ~~D~G~Y~C~a~n--g~-~~~~~l~V~~--p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~  163 (524)
T 2ec8_A           89 ATNTGKYTCTNKH--GL-SNSIYVFVRD--PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFI  163 (524)
T ss_dssp             STTCEEEEEEETT--SC-EEEEEEECCC--SSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEE
T ss_pred             hhhCEEEEEeecC--Cc-ceEEEEEECC--CCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCcee
Confidence            9999999999998  43 4455566553  3434466777889999999999999987778999988 788887766676


Q ss_pred             EeeeceEEEeecccCCCc-eEEEEEEcCCcce-eeeeeeeec---CCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCe-
Q psy11143        187 IHRTGSLRLYNIGPQDSG-LYRCTASNLLGED-VAEGYLTVT---GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-  260 (940)
Q Consensus       187 ~~~~~sL~I~~v~~~DsG-~YtC~a~N~~g~~-s~s~~L~V~---~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~-  260 (940)
                      ....+.|.|.+++.+|+| .|+|.+.|..+.. +..+.|.|.   ..+|.+...+....+.+|+.+.|.|.+.|.|.|. 
T Consensus       164 ~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~  243 (524)
T 2ec8_A          164 PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY  243 (524)
T ss_dssp             EETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCE
T ss_pred             ECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEE
Confidence            666788999999999999 9999999987765 336777776   3678888888888999999999999999999886 


Q ss_pred             EEEEECCeec--CCCCceEEe-----ecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCC---
Q psy11143        261 MTWFHDGNSL--DSDDHVTYE-----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---  330 (940)
Q Consensus       261 ItW~k~g~~l--~~~~~~~~~-----~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~---  330 (940)
                      ++|++++..+  ....+..+.     .....|.|.++..+|+|.|+|.|.|..|.....+.|.|.  .+|.+...+.   
T Consensus       244 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~--~~p~~~~~~~~~~  321 (524)
T 2ec8_A          244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV--DKGFINIFPMINT  321 (524)
T ss_dssp             EEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEE--SSCEEEEEESSCS
T ss_pred             EEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEe--ccCceEeecCCCc
Confidence            9999999883  332222221     223459999999999999999999999998887777775  5777766553   


Q ss_pred             ceeecCCCeEEEEEeecCcCCCe-EEEEeCCeeeccCC-cEEEe-------eeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDR-NHKIH-------RTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p~-i~W~k~g~~i~~~~-~~~i~-------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      ...+.+|++++|.|.+.|.|.|. |+|+|++..+.... ++...       ..++|.|.++..+|+|.|+|.|.|..|..
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  401 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA  401 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceE
Confidence            57899999999999999999998 99999998886554 33322       23589999999999999999999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCcc---------------
Q psy11143        402 VAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNE---------------  466 (940)
Q Consensus       402 ~~s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~---------------  466 (940)
                      +.++.|.|..+|.+...+.         ...+       ...|....++..  +++|++++....               
T Consensus       402 ~~~~~l~V~~~P~i~~~~~---------~~~g-------~l~C~~~g~P~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~  463 (524)
T 2ec8_A          402 AIAFNVYVNTKPEILTYDR---------LVNG-------MLQCVAAGFPEP--TIDWYFCPGTEQRCSASVLPVDVQTLN  463 (524)
T ss_dssp             EEEEEEEECEEEEEEEEEC---------CSSS-------CEEEEEEEESCC--EEECCCC----------CCCCCCCCCC
T ss_pred             EEEEEEEEecCCeEeeccc---------CcCc-------EEEEEEEeecCC--EEEEEECCCcccccccccCCCCceeee
Confidence            9999999988765432211         1112       334555444433  788999864320               


Q ss_pred             --cccccccee--eeec--cCCccceeeeccchhhhhheeeEEEEe
Q psy11143        467 --QQDHGSLMK--LLRF--PDESARTVVRAADVYERTLSHIKKHIQ  506 (940)
Q Consensus       467 --~~~~~~ll~--l~r~--p~~~~~~~~~Aa~~fg~t~~~i~~~v~  506 (940)
                        ....+.+..  .+..  ..+.|.|.|.|.+.+|.....+...|.
T Consensus       464 ~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  509 (524)
T 2ec8_A          464 SSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK  509 (524)
T ss_dssp             C-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-
T ss_pred             eccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEe
Confidence              011222321  1333  357799999999999977655544443

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=8.9e-43  Score=397.10  Aligned_cols=360  Identities=25%  Similarity=0.474  Sum_probs=280.6

Q ss_pred             CCeEEeCCCcEEE---ecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE-eeceEEEEccc-ccCCCeEEEEEEE
Q psy11143         45 PPIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGV-RESDAGVYNCVAQ  119 (940)
Q Consensus        45 pP~~~~~p~~~~V---~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~-~~gs~L~I~~v-~~~DsG~YtC~a~  119 (940)
                      +|.|..+|....+   .+|+.+.|.|.+.|+|.|+|+|+|+|..+......++. .++.+ .|.++ +.+|+|.|+|.|.
T Consensus         5 ~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l-~i~~~~~~~D~G~Y~C~A~   83 (384)
T 3kld_A            5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL-LINNPNKTQDAGTYQCIAT   83 (384)
T ss_dssp             EEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEE-EEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEE-EEcCCCCcccCEEEEEEEE
Confidence            4678888888777   58899999999999999999999999999765444444 44555 55554 8899999999999


Q ss_pred             eCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEE-eeeceEEEe
Q psy11143        120 NSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLY  196 (940)
Q Consensus       120 n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~-~~~~sL~I~  196 (940)
                      |..|...+ .+.+.+...+. ..........+.+|+.+.|.|.+. +.|.+.+.|++++..+....+... ...+.|.|.
T Consensus        84 N~~G~~~s~~~~l~v~~~~~-~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~  162 (384)
T 3kld_A           84 NSFGTIVSREAKLQFAYLEN-FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIA  162 (384)
T ss_dssp             ETTEEEECCCEEEEEEEECC-CSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEES
T ss_pred             cCcccEEecceEEEEecccc-cccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEe
Confidence            99887544 45555543221 112223456788999999999765 456779999999987765444333 345679999


Q ss_pred             ecccCCCceEEEEEEcCCcceee---eeeeeec------CCCCee-eeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC
Q psy11143        197 NIGPQDSGLYRCTASNLLGEDVA---EGYLTVT------GAPPIF-IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD  266 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~g~~s~---s~~L~V~------~~~p~~-~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~  266 (940)
                      +++.+|+|.|+|.|.|..+....   ...+.+.      ..+|.+ ...+....+.+|+.+.|.|.+.|.|.|.+.|+++
T Consensus       163 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~  242 (384)
T 3kld_A          163 KVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA  242 (384)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEET
T ss_pred             ecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeC
Confidence            99999999999999998765432   1122221      012222 3346677889999999999999999999999995


Q ss_pred             -CeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEe
Q psy11143        267 -GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK  345 (940)
Q Consensus       267 -g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~  345 (940)
                       +..+...  ......+.+|.|.++..+|+|.|+|.|.|..|.......|.|.  .+|.+...+.+..+..|+++.|.|.
T Consensus       243 ~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~--~~P~~~~~~~~~~v~~g~~v~l~C~  318 (384)
T 3kld_A          243 DGKPIARK--ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY--AQPNWVQIINDIHVAMEESVFWECK  318 (384)
T ss_dssp             TCCCCCTT--CEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE--EEEEEEECCCCEEECTTCCEEEECE
T ss_pred             CCcccccc--ceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEe--cCCccccCCCceEecCCCCEEEEeE
Confidence             4455432  2233344469999999999999999999999998888887776  4788888888889999999999999


Q ss_pred             ecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       346 v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      +.|.|.|.|+|+|+|..+....++.+ .+++|.|.++..+|+|.|+|.|.|..|...+++.|.|..
T Consensus       319 ~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          319 ANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             EEEESCCEEEEEETTEECCCBTTEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CCccCCCeEEEEECCEECCCCccEEE-eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence            99999999999999999887777665 467999999999999999999999999999999999864

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-42  Score=412.23  Aligned_cols=383  Identities=17%  Similarity=0.237  Sum_probs=268.4

Q ss_pred             CcccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCC-CcEEEecCCeEEEEEEeeccCCCeEEEEECC
Q psy11143          5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP-VSTTYSTGSTSRITCLVEGHPLPQMTWFHDG   83 (940)
Q Consensus         5 ~s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p-~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg   83 (940)
                      +...+|.|.+++.+|+|.|+|.|.|..+.....+.|.|..  .+...+ .......|+.+.|.|.+.|+|.|.|+|++++
T Consensus       100 r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~~--~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~  177 (527)
T 3qs9_E          100 RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN--TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCD  177 (527)
T ss_dssp             -CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-
T ss_pred             ceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEECC--ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECC
Confidence            3456799999999999999999999998887777777752  222222 2334467888899999999999999999988


Q ss_pred             EeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEE-EEEEEecccCCeeEecCCceeecCCCcEEEEEEe
Q psy11143         84 NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV-AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP  162 (940)
Q Consensus        84 ~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~-~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v  162 (940)
                      ..+.....  ............+..+|+|.|+|.|.|..|..... +.|.|.  ..|.+  .+....+.+|+++.|.|.+
T Consensus       178 ~~~~~~~~--~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~--~~p~~--~p~~~~v~~G~~v~L~C~~  251 (527)
T 3qs9_E          178 SQGESCKE--ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLN--QTPQT--TLPQLFLKVGEPLWIRCKA  251 (527)
T ss_dssp             --------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESS--SCCCC--SCCEEEECTTSCEEEEEEE
T ss_pred             CCCccccc--cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEe--ccCcc--CCCceEEeCCCeEEEEEEE
Confidence            76542110  11111112233456899999999999999987663 445443  34443  5667889999999999999


Q ss_pred             C-CCCCCeEEEeeCCeeccccCceE---------EeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCee
Q psy11143        163 D-GEPLPRISWSKDEAEFVEDRNHK---------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF  232 (940)
Q Consensus       163 ~-g~P~p~ItW~k~g~~i~~~~~~~---------~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~  232 (940)
                      . +.|.+.|+|++++..+.......         ....++|.|.+++.+|+|.|+|.|.|.   .+..+.|.|. .+|.+
T Consensus       252 ~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~-~~p~i  327 (527)
T 3qs9_E          252 VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIV-EKGFI  327 (527)
T ss_dssp             EESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC---CEE
T ss_pred             ccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEE-ccCcc
Confidence            6 89999999999998775543221         223456999999999999999999987   5667778887 44444


Q ss_pred             eeCC--CeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        233 IQRP--VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       233 ~~~p--~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      ...+  ....+.+|+.+.|.|.+.|+|.|.|+|+|+|..+....+..  ..+.+|.|.++..+|+|.|+|.|.|..|...
T Consensus       328 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~  405 (527)
T 3qs9_E          328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--DNGYSISKFCNHKHQPGEYIFHAENDDAQFT  405 (527)
T ss_dssp             ECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC--SSSSEEEEECCCTTCCSCEEEEEEETTEEEE
T ss_pred             ccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc--cCCcEEEEecCCcccCEEEEEEEEeCCCcEE
Confidence            4433  34667889999999999999999999999999987654422  2455699999999999999999999999888


Q ss_pred             eEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC-------------cEEE---eee
Q psy11143        311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-------------NHKI---HRT  374 (940)
Q Consensus       311 ~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~-------------~~~i---~~~  374 (940)
                      .++.|.|.  .+|.+...+.      |  ..|.|.+.|.|.|.|+|++++.......             ....   ...
T Consensus       406 ~~~~L~V~--~~P~i~~~~~------~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (527)
T 3qs9_E          406 KMFTLNIR--RKPQVLAEAS------A--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSS  475 (527)
T ss_dssp             EEEEEC----CCCEEEECCC------C--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEE
T ss_pred             EEEEEEEe--cCCeEEEeCC------C--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEE
Confidence            77666665  6888876542      2  3579999999999999998765431100             0001   112


Q ss_pred             ceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       375 ~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      ++|.|..  .+|+|.|+|.|.|.+|..+..+.|.|.++-
T Consensus       476 s~L~i~~--~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p~  512 (527)
T 3qs9_E          476 STLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSPGPF  512 (527)
T ss_dssp             EECCCCC--SSCSCEEEEEEECSSCEEEEEEEC------
T ss_pred             EEEEEEE--cCCCEEEEEEEEeCCCCceeEEEEecCCCc
Confidence            2344444  469999999999999999999999887653

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3e-42  Score=391.67  Aligned_cols=365  Identities=23%  Similarity=0.417  Sum_probs=287.9

Q ss_pred             EEEeCCCeEEeCCCcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCC-CeEEEeeceEEEEcccccCCCeEEEEE
Q psy11143         40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        40 l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~-~~~~~~~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      +.|..+|.|...|.++.+.+|+.++|.|.+.+ .|.+.|.|+|+|..+.... ..........|.|.+++.+|+|.|+|.
T Consensus         1 l~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (395)
T 1bih_A            1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCF   80 (395)
T ss_dssp             ----CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEE
T ss_pred             CCcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEE
Confidence            35778999999999999999999999999998 8889999999999887654 333333445579999999999999999


Q ss_pred             EEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCC---eeccc----cCceEEe
Q psy11143        118 AQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDE---AEFVE----DRNHKIH  188 (940)
Q Consensus       118 a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g---~~i~~----~~~~~~~  188 (940)
                      |.|..|...+ .+.+.|.....|.+  .+.+..+.+|+.+.|.|.+ .+.|.+.++|++++   .....    ..+....
T Consensus        81 a~n~~g~~~s~~~~l~v~~~~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  158 (395)
T 1bih_A           81 AETPAGVASSRVISFRKTYLIASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG  158 (395)
T ss_dssp             EEETTEEEECCCEEEEEEEEECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC
T ss_pred             EEeCCCeEEeEEEEEEEEEeecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEc
Confidence            9998876653 35566554444444  3446678899999999996 68899999999975   21111    3445556


Q ss_pred             eeceEEEeecccCCCc---eEEEEEEcCCcceeeeeee---eecCC-------CCeeeeCCCeeEEecCCeEEEEEEEee
Q psy11143        189 RTGSLRLYNIGPQDSG---LYRCTASNLLGEDVAEGYL---TVTGA-------PPIFIQRPVSTTYSTGSTSRITCLVEG  255 (940)
Q Consensus       189 ~~~sL~I~~v~~~DsG---~YtC~a~N~~g~~s~s~~L---~V~~~-------~p~~~~~p~~~~v~~G~~v~L~C~v~G  255 (940)
                      .++.|.|.+++.+|+|   .|+|.+.|..+........   .+...       .......+....+.+|+.+.|.|.+.|
T Consensus       159 ~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g  238 (395)
T 1bih_A          159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGS  238 (395)
T ss_dssp             TTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEEC
T ss_pred             CCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEecc
Confidence            6778999999999999   9999999988875433222   11110       001112356678899999999999999


Q ss_pred             eCCCeEEEEECCeecCCCCceEEe----ecCeEEEEeeeccCCCeEEEEEEEeCCCCcee-EEEEEEeeccCCeEEEcCC
Q psy11143        256 HPLPQMTWFHDGNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPF  330 (940)
Q Consensus       256 ~P~p~ItW~k~g~~l~~~~~~~~~----~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~-s~~l~V~~~~~P~i~~~p~  330 (940)
                      .|.+.+.|+++|..+.......+.    ..+..|.|.++..+|+|.|+|.|.|..|.... ++.|.|.  .+|.+...+.
T Consensus       239 ~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~--~~P~~~~~~~  316 (395)
T 1bih_A          239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV--SAPKYEQKPE  316 (395)
T ss_dssp             SSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE--EEEEEEECCC
T ss_pred             CCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEE--cCCccccCCC
Confidence            999999999999988754333222    23346999999999999999999999998765 6666665  5888888887


Q ss_pred             c-eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        331 D-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       331 ~-~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      . ..+.+|++++|.|.+.|.|.|.|.|+++|..+..+ ++.+ .+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       317 ~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          317 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV-TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             SEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE-ETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEE-ECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            7 78899999999999999999999999999988654 5554 3459999999999999999999999999999999987


Q ss_pred             e
Q psy11143        410 T  410 (940)
Q Consensus       410 ~  410 (940)
                      .
T Consensus       395 ~  395 (395)
T 1bih_A          395 N  395 (395)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=8.8e-42  Score=396.03  Aligned_cols=373  Identities=18%  Similarity=0.241  Sum_probs=274.6

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEE-eCCCcEEEecCCeEEEEEEeeccCCC---eEEEEEC
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFI-QRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHD   82 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~-~~p~~~~V~eGesv~L~C~v~g~P~p---~V~W~kd   82 (940)
                      ..+|.|.+++. |+| |+|.|.+..+..+..+.|.|..+|.+. ..|.+..+.+|+.++|.|.+.+.|++   .|+|+|+
T Consensus        49 ~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~  126 (450)
T 1z7z_I           49 RKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG  126 (450)
T ss_dssp             EEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET
T ss_pred             ceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeC
Confidence            45899999988 999 999998877777778888888777665 67777889999999999999998887   9999999


Q ss_pred             CEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceE--------EEEEEEEecc--cCCeeEecCCceeecC
Q psy11143         83 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE--------SVAMIRINGH--RAPRLVVKPFDMRAPA  152 (940)
Q Consensus        83 g~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~--------~~~~L~V~~~--~~P~~~~~p~~~~v~~  152 (940)
                      |..+....... ......|.|.++..+|+|.|+|.|.|..|...        ....+.|...  ..|.+..   ...+.+
T Consensus       127 g~~l~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~  202 (450)
T 1z7z_I          127 EKELKREPAVG-EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEV  202 (450)
T ss_dssp             TEEEEEEECCT-TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEET
T ss_pred             CEEeecccccc-cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEe
Confidence            99886332111 12234689999999999999999999876432        1234444432  1222221   267889


Q ss_pred             CCcEEEEEEeCCC-C--CCeEEEeeCCeeccccCceEEeeeceEEE---eecccCCCc--eEEEEEEcCCcceeeeeeee
Q psy11143        153 GSSVEIPCKPDGE-P--LPRISWSKDEAEFVEDRNHKIHRTGSLRL---YNIGPQDSG--LYRCTASNLLGEDVAEGYLT  224 (940)
Q Consensus       153 Ge~vtL~C~v~g~-P--~p~ItW~k~g~~i~~~~~~~~~~~~sL~I---~~v~~~DsG--~YtC~a~N~~g~~s~s~~L~  224 (940)
                      |+.+.|.|.+.|. |  .+.+.|++++..+..  +.....+ .+.+   .+++.+|+|  .|+|.+.|..|.....+.|.
T Consensus       203 G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~  279 (450)
T 1z7z_I          203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGND-SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT  279 (450)
T ss_dssp             TSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEEETT-EEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEecCC-ceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEE
Confidence            9999999999998 7  789999999988765  2222211 2222   277899999  99999999999988888888


Q ss_pred             ecCCC-CeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEE
Q psy11143        225 VTGAP-PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ  303 (940)
Q Consensus       225 V~~~~-p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~  303 (940)
                      |...+ |.+..  ....+.+|+.++|.|.+.  |.|.++|  +|..+....      ....|.|..+..+|+|.|+|.|.
T Consensus       280 V~~~~~p~i~~--~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~  347 (450)
T 1z7z_I          280 IYSFPAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG------PRAQLLLKATPEDNGRSFSCSAT  347 (450)
T ss_dssp             EECCCCCEEEE--SCSEEETTCEEEEEEEC--------------------C------CCCCEEEECCGGGTTCEEEEEEE
T ss_pred             EecCCCCeEec--CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCC------ceEEEEEecCcccCCceEEEEEE
Confidence            88533 44433  345889999999999998  8899999  777762211      12249999999999999999999


Q ss_pred             eCCC-Cc---eeEEEEEEeeccCCeEEEcC--CceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceE
Q psy11143        304 NSEG-SA---ESVAMIRINGHRAPRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL  377 (940)
Q Consensus       304 N~~G-s~---~~s~~l~V~~~~~P~i~~~p--~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL  377 (940)
                      |..+ ..   ..++.|.|  ..+|.+...+  .+..+.+|++++|.|.+.|+|.|.|+|+|+|..+...+        .+
T Consensus       348 n~~~g~~~~~~~~~~l~V--~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g--------~~  417 (450)
T 1z7z_I          348 LEVAGQLIHKNQTRELRV--LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG--------ES  417 (450)
T ss_dssp             EEETTEEEEEEEEEECEE--EEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT--------SC
T ss_pred             cCCCCcccccceeEEEEE--ecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCC--------Ce
Confidence            7665 32   24445555  4677766554  56788999999999999999999999999997543332        22


Q ss_pred             EEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       378 ~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      .  .++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       418 ~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          418 V--TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             E--ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             E--eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            2  57889999999999999999999999999753

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.5e-41  Score=386.71  Aligned_cols=367  Identities=23%  Similarity=0.430  Sum_probs=288.5

Q ss_pred             EEeCCCeEEe-CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEc----ccccCCCeE
Q psy11143         41 TVNAPPIFIQ-RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLN----GVRESDAGV  113 (940)
Q Consensus        41 ~V~~pP~~~~-~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~----~v~~~DsG~  113 (940)
                      .+..+|.+.. .+....+.+|+.++|.|.+.|.|.++|.|+|+|..+....  +..+...+..|.|.    +++.+|+|.
T Consensus        12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~   91 (404)
T 3p3y_A           12 ELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGE   91 (404)
T ss_dssp             -CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEE
T ss_pred             hccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEE
Confidence            4557888775 4677899999999999999999999999999999875432  22222333344554    788999999


Q ss_pred             EEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCee-ccccCceEEeee
Q psy11143        114 YNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAE-FVEDRNHKIHRT  190 (940)
Q Consensus       114 YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~-i~~~~~~~~~~~  190 (940)
                      |+|.|.|..|...+ .+.|.|...+. ..........+.+|+.++|.|.+ .+.|.+.+.|++++.. +....+.....+
T Consensus        92 Y~C~a~n~~g~~~s~~~~l~V~~~p~-~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  170 (404)
T 3p3y_A           92 YQCFARNKFGTALSNRIRLQVSKSPL-WPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN  170 (404)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCCC-CCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTT
T ss_pred             EEEEEEcCCCeEeeeeEEEEEeccCc-cccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCC
Confidence            99999999887753 56666654322 22233455788999999999999 7889999999997744 344455556667


Q ss_pred             ceEEEeecccCC-CceEEEEEEcCCccee---eeeeeeecC------CCCeeeeCC---CeeEEecCCeEEEEEEEeeeC
Q psy11143        191 GSLRLYNIGPQD-SGLYRCTASNLLGEDV---AEGYLTVTG------APPIFIQRP---VSTTYSTGSTSRITCLVEGHP  257 (940)
Q Consensus       191 ~sL~I~~v~~~D-sG~YtC~a~N~~g~~s---~s~~L~V~~------~~p~~~~~p---~~~~v~~G~~v~L~C~v~G~P  257 (940)
                      +.|.|.+++.+| +|.|+|.+.|..+...   ....+.|..      .+|.+....   ....+.+|+.+.|.|.+.|.|
T Consensus       171 ~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p  250 (404)
T 3p3y_A          171 GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVP  250 (404)
T ss_dssp             SCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSS
T ss_pred             CcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCC
Confidence            789999999999 5999999999877532   234455542      223333222   345688999999999999999


Q ss_pred             CCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCC
Q psy11143        258 LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG  337 (940)
Q Consensus       258 ~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G  337 (940)
                      .+.++|+++|..+..... .....+..|.|.++..+|+|.|+|.|.|..|.....+.|.|.  .+|.+...+.+..+.+|
T Consensus       251 ~~~v~W~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~--~~p~~~~~~~~~~v~~g  327 (404)
T 3p3y_A          251 TPDIAWYKKGGDLPSDKA-KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK--AAPYWLDEPKNLILAPG  327 (404)
T ss_dssp             CCEEEEEETTBCCCTTTE-EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE--EEEEEEECCCCEEECTT
T ss_pred             CCcEEEEECCEECCCCcc-cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEe--CCCeeeccCCcceeecC
Confidence            999999999998876554 334444569999999999999999999999988777777775  57888888888899999


Q ss_pred             CeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        338 SSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       338 ~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      ++++|.|.+.|.|.|.|.|+++|..+....  ......+++|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus       328 ~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          328 EDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             CCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999999999886543  22233466899999999999999999999999999999998864

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.6e-41  Score=384.62  Aligned_cols=358  Identities=26%  Similarity=0.421  Sum_probs=286.6

Q ss_pred             CCeEEeCCCcEEE---ecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEccccc-CCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE-SDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V---~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~-~DsG~YtC~a~n  120 (940)
                      +|.|..+|....+   .+|+.++|.|.+.|.|.+.|.|+|+|..+......++...+..|.|.++.. +|+|.|+|.|.|
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n   83 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN   83 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEc
Confidence            6889999998887   789999999999999999999999999987654444443444679999986 999999999999


Q ss_pred             CCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeecc--ccCceEEe-eeceEEE
Q psy11143        121 SEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFV--EDRNHKIH-RTGSLRL  195 (940)
Q Consensus       121 ~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~--~~~~~~~~-~~~sL~I  195 (940)
                      ..|...+ .+.|.|...+.. ....+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.  ...+.... ..+.|.|
T Consensus        84 ~~g~~~s~~~~l~v~~~~~~-~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i  162 (382)
T 1cs6_A           84 ARGTVVSREASLRFGFLQEF-SAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYI  162 (382)
T ss_dssp             TTEEEECCCEEEEEEEECCC-CSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEE
T ss_pred             CCcEEEecceEEEeeccccc-cccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEE
Confidence            9886544 456666543221 12234567889999999999964 57888999999887643  22333222 3367999


Q ss_pred             eecccCCCceEEEEEEcCCccee-----eeeeeeecC-----CCCeeee-CCCeeEEecCCeEEEEEEEeeeCCCeEEEE
Q psy11143        196 YNIGPQDSGLYRCTASNLLGEDV-----AEGYLTVTG-----APPIFIQ-RPVSTTYSTGSTSRITCLVEGHPLPQMTWF  264 (940)
Q Consensus       196 ~~v~~~DsG~YtC~a~N~~g~~s-----~s~~L~V~~-----~~p~~~~-~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~  264 (940)
                      .+++.+|+|.|+|.+.|..|...     ....+.+..     .+|.+.. .+....+.+|+.++|.|.+.|.|.+.+.|+
T Consensus       163 ~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~  242 (382)
T 1cs6_A          163 AKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR  242 (382)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred             EeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEE
Confidence            99999999999999998775322     223344321     1344443 356778999999999999999999999999


Q ss_pred             ECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEE
Q psy11143        265 HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC  344 (940)
Q Consensus       265 k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C  344 (940)
                      +++..+...    ....+..|.|.++..+|+|.|+|.|.|..|.....+.|.|.  .+|.+...+....+.+|+.++|.|
T Consensus       243 ~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~--~~p~~~~~~~~~~~~~g~~~~l~C  316 (382)
T 1cs6_A          243 KLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH--AQPDWLDVITDTEADIGSDLRWSC  316 (382)
T ss_dssp             ECCSCCSCC----CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE--EEEEEEECCCCEEEETTCCEEEEC
T ss_pred             ECCcccccE----EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEe--cCCCcccCCCccEEcCCCeEEEEE
Confidence            998876541    22344569999999999999999999999987777777765  578888888888899999999999


Q ss_pred             eecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        345 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       345 ~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      .+.|.|.|.|.|+++|..+....++.+ .+++|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       317 ~~~g~p~p~v~W~~~g~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          317 VASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEEEESCCEEEEEETTEECCCCSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeeeecCCEEEEEECCEECCCCceEEE-ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            999999999999999999887777665 45799999999999999999999999999999999986

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-41  Score=390.57  Aligned_cols=383  Identities=14%  Similarity=0.156  Sum_probs=245.5

Q ss_pred             CCCCCeEEEEEEEcCCceE-EEE--------------EEEEEe-CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEE
Q psy11143         16 QREHGGRYSCVAGNPAGVY-RGD--------------LHVTVN-APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW   79 (940)
Q Consensus        16 ~~sDsG~Y~C~a~n~~g~~-~~~--------------v~l~V~-~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W   79 (940)
                      ..+|.|.|+|...+..+.. +..              +.+... ..+.++.+|..+.|.+|+++.|.|.+.+.|.+.|.|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W   82 (423)
T 3qs7_E            3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLW   82 (423)
T ss_dssp             -----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEE
T ss_pred             ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEE
Confidence            4578999999998654322 111              111111 113556677789999999999999999999999999


Q ss_pred             EECCEeecCCCCeEEEe-eceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEE
Q psy11143         80 FHDGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI  158 (940)
Q Consensus        80 ~kdg~~I~~~~~~~~~~-~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL  158 (940)
                      ++++..+.......... ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..  +|.+. ...+..+..|+.+.|
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~--~p~~~-~~~p~~~~~~~~~~L  159 (423)
T 3qs7_E           83 VFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN--TLLYT-LRRPYFRKMENQDAL  159 (423)
T ss_dssp             EETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-------C-EEEEEEEECSSSSCE
T ss_pred             EECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEec--Ccccc-ccCCcEeccCCceEE
Confidence            99998876533222111 113479999999999999999999999877777777763  33322 122334567888999


Q ss_pred             EEEeCCCCCCeEEEeeCCeeccccCc---eEEeeeceEEEeecccCCCceEEEEEEcCCcceee-eeeeeecCCCCeeee
Q psy11143        159 PCKPDGEPLPRISWSKDEAEFVEDRN---HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGAPPIFIQ  234 (940)
Q Consensus       159 ~C~v~g~P~p~ItW~k~g~~i~~~~~---~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~-s~~L~V~~~~p~~~~  234 (940)
                      .|.+.|.|.|.|+|++++..+.....   ..+..... .   +...|+|.|+|.|.|..|.... .+.|.|.. +|..  
T Consensus       160 ~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~-~---l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-~p~~--  232 (423)
T 3qs7_E          160 VCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK-V---LHELFGTDIRCCARNELGRECTRLFTIDLNQ-TPQT--  232 (423)
T ss_dssp             EEEEEESSCCEEEEEEC-------------CEEECCS-E---ECCCCSSCEEEEEECSSCEEEEECEEEESSS-CCCS--
T ss_pred             EEEEeeecCCeEEEEECCCCCccccccccccccccce-E---EecccCeEEEEEEEcCCCCcceeeEEEEEec-CCcc--
Confidence            99999999999999998775432110   01111111 1   1578999999999999987654 35666653 2322  


Q ss_pred             CCCeeEEecCCeEEEEEEEee-eCCCeEEEEECCeecCCCCceE---E-----eecCeEEEEeeeccCCCeEEEEEEEeC
Q psy11143        235 RPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVT---Y-----EHDGFVLVLNGVRESDAGVYNCVAQNS  305 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~---~-----~~~g~sL~I~~v~~~DsG~YtC~A~N~  305 (940)
                      .+....+.+|+.+.|.|.+.| .|.|.|+|+|+|..+.......   .     .....+|.|.++..+|+|.|+|.|.|.
T Consensus       233 ~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            455778999999999999999 6779999999999886542221   1     111235999999999999999999998


Q ss_pred             CCCceeEEEEEEeeccCCeEEEcC--CceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCC
Q psy11143        306 EGSAESVAMIRINGHRAPRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG  383 (940)
Q Consensus       306 ~Gs~~~s~~l~V~~~~~P~i~~~p--~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~  383 (940)
                         ...++.|.|.  .+|.+...+  ....+.+|+++.|.|.+.|+|.|.|+|+|+|..+....... ...-.+.+....
T Consensus       313 ---~~~~~~L~V~--~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~~~~~~~~  386 (423)
T 3qs7_E          313 ---PSQSALVTIV--EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL-DNGYSISKFCNH  386 (423)
T ss_dssp             ---EEEEEEEEEE--SSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC-SSSSEEEEECCC
T ss_pred             ---CCceEEEEEE--eCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc-cCCcEEEEEecc
Confidence               5555666665  567666655  34677899999999999999999999999999886543110 011122235677


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        384 PQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       384 ~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .+|+|.|+|.|.|..|..+.++.|.|...|.
T Consensus       387 ~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~  417 (423)
T 3qs7_E          387 KHQPGEYIFHAENDDAQFTKMFTLNIRSGTK  417 (423)
T ss_dssp             TTCCSCEEEEEEETTEEEEEEEEEC------
T ss_pred             cccCEEEEEEEEcCCceEEEEEEEEEecCCc
Confidence            7999999999999999999999999998765

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=2.6e-41  Score=383.32  Aligned_cols=352  Identities=24%  Similarity=0.417  Sum_probs=277.8

Q ss_pred             CCeEEeCCCc-EEEecCCeEEEEEEeeccCCCeEEEEE-CCEeecCCCCeEEEeeceEEEEcccccCC------CeEEEE
Q psy11143         45 PPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESD------AGVYNC  116 (940)
Q Consensus        45 pP~~~~~p~~-~~V~eGesv~L~C~v~g~P~p~V~W~k-dg~~I~~~~~~~~~~~gs~L~I~~v~~~D------sG~YtC  116 (940)
                      +|.|..+|.. +.+.+|+.++|.|.+.|.|.++|+|+| +|..+......+....+..|.|.+++.+|      +|.|+|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C   82 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC   82 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEE
Confidence            6788888776 568899999999999999999999999 78887654444334344457999999997      999999


Q ss_pred             EEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCC---CeEEEeeCCeeccc-----cCceEE
Q psy11143        117 VAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVE-----DRNHKI  187 (940)
Q Consensus       117 ~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~---p~ItW~k~g~~i~~-----~~~~~~  187 (940)
                      .|.|..|...+ .+.|.+..  .|.+...+....+.+|+.++|.|.+.+.+.   +.+.|++++..+..     ..+...
T Consensus        83 ~a~n~~g~~~s~~~~v~v~~--~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  160 (388)
T 2v5m_A           83 LARNQFGSIISRDVHVRAVV--AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV  160 (388)
T ss_dssp             EEEETTEEEECCCEEEEEEC--CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEE
T ss_pred             EEEccCCeEEecceEEEEcc--ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEE
Confidence            99999886433 44555543  455566667788999999999999987653   68999998876632     345555


Q ss_pred             eeeceEEEeecccCCC-ceEEEEEEcCCccee-e---eeeeeecCCC----Cee-eeCCCeeEEecCCeEEEEEEEeeeC
Q psy11143        188 HRTGSLRLYNIGPQDS-GLYRCTASNLLGEDV-A---EGYLTVTGAP----PIF-IQRPVSTTYSTGSTSRITCLVEGHP  257 (940)
Q Consensus       188 ~~~~sL~I~~v~~~Ds-G~YtC~a~N~~g~~s-~---s~~L~V~~~~----p~~-~~~p~~~~v~~G~~v~L~C~v~G~P  257 (940)
                      ..++.|.|.+++.+|+ |.|+|.+.|..+... .   ...|.|....    |.+ ........+.+|+.++|.|.+.|+|
T Consensus       161 ~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p  240 (388)
T 2v5m_A          161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP  240 (388)
T ss_dssp             CTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEES
T ss_pred             ccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCC
Confidence            5667899999999999 999999999764322 1   1245554221    111 1123345688999999999999999


Q ss_pred             CCeEEEEECCeec------CCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCc
Q psy11143        258 LPQMTWFHDGNSL------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD  331 (940)
Q Consensus       258 ~p~ItW~k~g~~l------~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~  331 (940)
                      .|.|+|++++..+      ....++.  ..+.+|.|.++..+|+|.|+|.|.|..|.....+.|.|.  .+|.+...|..
T Consensus       241 ~p~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~--~~p~~~~~~~~  316 (388)
T 2v5m_A          241 APSFRWYKFIEGTTRKQAVVLNDRVK--QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT--APLSAKIDPPT  316 (388)
T ss_dssp             CCEEEEEEECTTSSCEEECCCSSSEE--EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE--EEEEEEEESSE
T ss_pred             CCEEEEEecCCCCcccccccccCcee--cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEe--CCCccccCCCc
Confidence            9999999985433      2222322  234469999999999999999999999988777777775  57777778888


Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      ..+.+|++++|.|.+.|.|.|.|.|+|+|..+...       +++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       317 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          317 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEecCCCCEEEEEEeccccCCeEEEEECCEECccC-------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            89999999999999999999999999999987543       458999999999999999999999999999999876

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=7.4e-41  Score=396.36  Aligned_cols=393  Identities=17%  Similarity=0.273  Sum_probs=283.8

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCce---EEEEEEEEE----eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCC--e
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGV---YRGDLHVTV----NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP--Q   76 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~---~~~~v~l~V----~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p--~   76 (940)
                      +..+|+|.+++.+|+|.|+|.|.|..|.   ....+.|.|    ..+|.+...+....+.+|+.++|.|.+.|.|++  .
T Consensus        68 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  147 (523)
T 2rcj_C           68 TSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVT  147 (523)
T ss_pred             CEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceE
Confidence            4568999999999999999999997753   234456777    457888888887788899999999999987654  9


Q ss_pred             EEEEECCEeecCCCCeEE---Eeec-----eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe--cccCCeeEecCC
Q psy11143         77 MTWFHDGNSLDSDDHVTY---EHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN--GHRAPRLVVKPF  146 (940)
Q Consensus        77 V~W~kdg~~I~~~~~~~~---~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~--~~~~P~~~~~p~  146 (940)
                      |+|+|+|..+........   ..++     ..|.|.++..+|+|.|+|.|.|..+.......+.+.  ...+|.+...+.
T Consensus       148 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~  227 (523)
T 2rcj_C          148 VAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAP  227 (523)
T ss_pred             EEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCC
Confidence            999999998864322110   1122     358999999999999999999998876655443321  223455554444


Q ss_pred             ceeecCCCcEEEEEEeCCC-CCC-eEEEeeCCeeccccC--c-----eEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        147 DMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDR--N-----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g~~i~~~~--~-----~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      ...+.+|+.+.|.|.+.|. |.+ .|+|++++..+....  .     ......+.|.|.++..+| |.|+|.|.|..|..
T Consensus       228 ~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          228 SSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  306 (523)
T ss_pred             CcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence            4567899999999999886 877 899999987653211  1     011223479999999999 99999999999987


Q ss_pred             eeeeeeeecCCCCeeeeCCCeeE-EecCCeEEEEEEEeeeCC----CeEEEEECCeecCCCCceE--EeecC-----eEE
Q psy11143        218 VAEGYLTVTGAPPIFIQRPVSTT-YSTGSTSRITCLVEGHPL----PQMTWFHDGNSLDSDDHVT--YEHDG-----FVL  285 (940)
Q Consensus       218 s~s~~L~V~~~~p~~~~~p~~~~-v~~G~~v~L~C~v~G~P~----p~ItW~k~g~~l~~~~~~~--~~~~g-----~sL  285 (940)
                      .....+.|...|..+...+.... +.+|+.+.|.|.+.|.|+    +.|+|+|+|..+.......  ...++     ..|
T Consensus       307 ~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L  386 (523)
T 2rcj_C          307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVL  386 (523)
T ss_pred             ceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEE
Confidence            77777777644433344444343 788999999999999754    4999999999886543221  11122     238


Q ss_pred             EEeeeccCCCeEEEEEEEeCCCCceeEEEEEE--eeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC--eEEEEeCCe
Q psy11143        286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEA  361 (940)
Q Consensus       286 ~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V--~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p--~i~W~k~g~  361 (940)
                      .|.++..+|+|.|+|.|.|..+.......+.+  ....+|.+...+.......|..++|.|.+.|.|+|  .|+|+|+|.
T Consensus       387 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~  466 (523)
T 2rcj_C          387 TVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ  466 (523)
T ss_pred             EECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCE
Confidence            88889999999999999999887765555543  13467777665443322334459999999998776  999999998


Q ss_pred             eeccCCcEE--Eeeec------eEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        362 EFVEDRNHK--IHRTG------SLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       362 ~i~~~~~~~--i~~~~------sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      .+.......  ...++      .|.|.....+|+|.|+|.|.|..-
T Consensus       467 ~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l  512 (523)
T 2rcj_C          467 PENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  512 (523)
T ss_pred             ECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCc
Confidence            876432211  12233      345555555789999999999753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=3.6e-44  Score=443.72  Aligned_cols=402  Identities=23%  Similarity=0.403  Sum_probs=38.3

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCC---CcEEEecCCeEEEEEEeeccCCCeEEEEEC
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHD   82 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p---~~~~V~eGesv~L~C~v~g~P~p~V~W~kd   82 (940)
                      ..++|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..+|.+...+   ....+.+|+.++|.|.+.++|.+.|.|+|+
T Consensus       288 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~  367 (772)
T 3v2a_R          288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKN  367 (772)
T ss_dssp             EEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC--------------------------------------
T ss_pred             EEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEEC
Confidence            45689999999999999999999999988888999999888765543   456789999999999999999999999999


Q ss_pred             CEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEec---CCceeecCCCcEEEE
Q psy11143         83 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIP  159 (940)
Q Consensus        83 g~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~---p~~~~v~~Ge~vtL~  159 (940)
                      |..+....  .+. ....|.|.+++.+|+|.|+|.|.|..|....+..+.+.+..+|.+...   +....+.+|+.++|.
T Consensus       368 g~~l~~~~--~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~  444 (772)
T 3v2a_R          368 GIPLESNH--TIK-AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLT  444 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEeCCCCc--eEc-cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEE
Confidence            99886532  222 335679999999999999999999988765544444444344544322   122247899999999


Q ss_pred             EEeCCCCCCe-EEEeeCCee--------------------------------ccc-cCceEEe-----eeceEEEeeccc
Q psy11143        160 CKPDGEPLPR-ISWSKDEAE--------------------------------FVE-DRNHKIH-----RTGSLRLYNIGP  200 (940)
Q Consensus       160 C~v~g~P~p~-ItW~k~g~~--------------------------------i~~-~~~~~~~-----~~~sL~I~~v~~  200 (940)
                      |.+.+.|.|. ++|++++..                                +.. ..+....     ....|.|.++  
T Consensus       445 C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--  522 (772)
T 3v2a_R          445 CTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--  522 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--
Confidence            9999999996 999996322                                110 0011111     1135777776  


Q ss_pred             CCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEE--
Q psy11143        201 QDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY--  278 (940)
Q Consensus       201 ~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~--  278 (940)
                      +|+|.|+|.|.|..|..+..+.|.|. .+|.+...+. ..+.+|+.+.|.|.+.+.|.+.+.|+|++..+........  
T Consensus       523 ~d~G~Y~C~a~N~~g~~~~~~~l~V~-~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  600 (772)
T 3v2a_R          523 NVSALYKCEAVNKVGRGERVISFHVT-RGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT  600 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCeEEEEEEEccccccceeEEEEEE-CCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccc
Confidence            78999999999999998888888887 4555554443 4577999999999999999999999999876643221111  


Q ss_pred             ------------------e--ecCeEEEEeeeccCCCeEEEEEEEeCCCCce--eEEEEEEeeccCCeEEEcCCceeecC
Q psy11143        279 ------------------E--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAE--SVAMIRINGHRAPRLVVKPFDMRAPA  336 (940)
Q Consensus       279 ------------------~--~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~--~s~~l~V~~~~~P~i~~~p~~~~v~~  336 (940)
                                        .  ....+|.|.++..+|+|.|+|.|.|..+...  ....+.|....+|.+...+.+..+.+
T Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~  680 (772)
T 3v2a_R          601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSI  680 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeC
Confidence                              0  1122499999999999999999999765543  34556666667899988888888999


Q ss_pred             CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee-eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      |++++|.|.+.|.|.|.|+|+|+|..+..+.++.+.. .++|.|.++..+|+|.|+|.|.|..|....++.|.|+++|.
T Consensus       681 g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~  759 (772)
T 3v2a_R          681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE  759 (772)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             CCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCC
Confidence            9999999999999999999999999887766555443 66899999999999999999999999999999999998764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=3.5e-40  Score=392.03  Aligned_cols=426  Identities=13%  Similarity=0.121  Sum_probs=287.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec-eEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-FVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g-s~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      +.++..++|.+|++++|.|.+.+.|..++.|++++..+.....+.....+ ..|.|.+++.+|+|.|+|.|.|..+....
T Consensus        52 ~~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~  131 (527)
T 3qs9_E           52 VYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI  131 (527)
T ss_dssp             ----CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEE
T ss_pred             eeeeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEE
Confidence            34555899999999999999998888899999999987654444322222 34899999999999999999998887666


Q ss_pred             EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEE
Q psy11143        128 VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR  207 (940)
Q Consensus       128 ~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~Yt  207 (940)
                      ...|.|.  +.+ +.....+.....|+.+.|.|.+.|.|.|.|+|++++..+....... ...-......+...|+|.|+
T Consensus       132 ~~~v~v~--~~~-~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~G~Y~  207 (527)
T 3qs9_E          132 LFTVSIR--NTL-LYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES-PAVVKKEEKVLHELFGTDIR  207 (527)
T ss_dssp             EEEEEEC--------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCSSCEE
T ss_pred             EEEEEEC--Cce-eeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccC-CcEEEEeeeeccccCCEEEE
Confidence            6555553  111 1111222334568888999999999999999999876553211000 00011222334578999999


Q ss_pred             EEEEcCCcceeee-eeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEe-eeCCCeEEEEECCeecCCCCceEE-------
Q psy11143        208 CTASNLLGEDVAE-GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTY-------  278 (940)
Q Consensus       208 C~a~N~~g~~s~s-~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~-G~P~p~ItW~k~g~~l~~~~~~~~-------  278 (940)
                      |.|.|..|..... +.|.|... |.+  .+....+.+|+.+.|.|.+. |.|.+.|+|++++..+........       
T Consensus       208 C~A~N~~G~~~~~~~~l~V~~~-p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~  284 (527)
T 3qs9_E          208 CCARNELGRECTRLFTIDLNQT-PQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR  284 (527)
T ss_dssp             EEEECSSCEEEEECEEEESSSC-CCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTT
T ss_pred             EEEEeCCCcccceEEEEEEecc-Ccc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCc
Confidence            9999999986654 66777633 333  56678899999999999996 899999999999998765433221       


Q ss_pred             -eecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCC--ceeecCCCeEEEEEeecCcCCCeEE
Q psy11143        279 -EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKPDGEPLPRIS  355 (940)
Q Consensus       279 -~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~--~~~v~~G~~vtL~C~v~g~P~p~i~  355 (940)
                       .....+|.|.++..+|+|.|+|.|.|.   ...++.|.|.  .+|.+...+.  ...+.+|+.+.|.|.+.|.|.|.|+
T Consensus       285 ~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~--~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~  359 (527)
T 3qs9_E          285 TMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIV--EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT  359 (527)
T ss_dssp             EEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC----CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEE
T ss_pred             ceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEE--ccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEE
Confidence             112234999999999999999999998   4455555554  5666665442  3567899999999999999999999


Q ss_pred             EEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCCCCCCCCCCCCCCCCCCccccc
Q psy11143        356 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADD  435 (940)
Q Consensus       356 W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~  435 (940)
                      |+|+|..+....+.. ....+|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.+...+            .+. 
T Consensus       360 W~k~g~~l~~~~~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~------------~~~-  425 (527)
T 3qs9_E          360 WTFSRKSFPCEQKGL-DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEA------------SAS-  425 (527)
T ss_dssp             EEETTEEEECBCCBC-SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECC------------CCE-
T ss_pred             EEECCEECcCCcccc-cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeC------------CCC-
Confidence            999999887655432 245689999999999999999999999999999999998776532221            011 


Q ss_pred             cceeeeeecccccCcccceEEEeccCCCCccc----------------ccccc--ceeeeec--cCCccceeeeccchhh
Q psy11143        436 TIHMAVKLASREVDAAVNATINSLFGYHSNEQ----------------QDHGS--LMKLLRF--PDESARTVVRAADVYE  495 (940)
Q Consensus       436 ~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~~----------------~~~~~--ll~l~r~--p~~~~~~~~~Aa~~fg  495 (940)
                           ...|.+..++..  ++.|++++.....                ...+.  ....+.+  ..+.|.|.|.|.+.+|
T Consensus       426 -----~l~C~a~g~P~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G  498 (527)
T 3qs9_E          426 -----QASCFSDGYPLP--SWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLG  498 (527)
T ss_dssp             --------EEEECSSCC--EEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSC
T ss_pred             -----EEEEEEEEEcCC--eEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCC
Confidence                 126666666654  7788876532200                00000  0111222  2467999999999999


Q ss_pred             hhheeeEEEEee
Q psy11143        496 RTLSHIKKHIQA  507 (940)
Q Consensus       496 ~t~~~i~~~v~~  507 (940)
                      .....+...+..
T Consensus       499 ~~~~~~~L~V~~  510 (527)
T 3qs9_E          499 TSCETILLNSPG  510 (527)
T ss_dssp             EEEEEEEC----
T ss_pred             CceeEEEEecCC
Confidence            887655544443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=1.1e-40  Score=412.41  Aligned_cols=478  Identities=19%  Similarity=0.280  Sum_probs=92.5

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCceEEEE-EEEEEeC--CCeEEeCCC-cEEEecCCeEEEEEEeec--cCCCeEEEE
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVNA--PPIFIQRPV-STTYSTGSTSRITCLVEG--HPLPQMTWF   80 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~-v~l~V~~--pP~~~~~p~-~~~V~eGesv~L~C~v~g--~P~p~V~W~   80 (940)
                      ...|.|.+++.+|+|.|+|.+.+........ +.+.|..  ++.+...|. ...+.+|+.++|.|.+.+  .|.+.|.|+
T Consensus       182 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~  261 (772)
T 3v2a_R          182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE  261 (772)
T ss_dssp             TTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEE
T ss_pred             CCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEe
Confidence            5679999999999999999999865543322 3344433  234444444 478999999999999987  456799999


Q ss_pred             ECCEeecCCCCeE----------EEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEec---CCc
Q psy11143         81 HDGNSLDSDDHVT----------YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK---PFD  147 (940)
Q Consensus        81 kdg~~I~~~~~~~----------~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~---p~~  147 (940)
                      +++..+.......          .......|.|.+++.+|+|.|+|.+.|..+.....+.|.|...  |.+...   +..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~--p~~~~~~~~~~~  339 (772)
T 3v2a_R          262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK--PFVAFGSGMESL  339 (772)
T ss_dssp             CC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECC--CC----------
T ss_pred             cCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCC--CeeEeccCCCCc
Confidence            9998765432221          1123346899999999999999999999887777777777653  333322   245


Q ss_pred             eeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCccee--eeeeeee
Q psy11143        148 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV--AEGYLTV  225 (940)
Q Consensus       148 ~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s--~s~~L~V  225 (940)
                      ..+.+|+.++|.|.+.+.|.+.+.|+++|..+....  .+.....|.|.+++.+|+|.|+|.|.|..|...  ..+.|.|
T Consensus       340 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v  417 (772)
T 3v2a_R          340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH--TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV  417 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCc--eEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEE
Confidence            678899999999999999999999999998876532  223457899999999999999999999888653  4455566


Q ss_pred             cCCCCeeeeC---CCeeEEecCCeEEEEEEEeeeCCCe-EEEEECCee--------------------------------
Q psy11143        226 TGAPPIFIQR---PVSTTYSTGSTSRITCLVEGHPLPQ-MTWFHDGNS--------------------------------  269 (940)
Q Consensus       226 ~~~~p~~~~~---p~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k~g~~--------------------------------  269 (940)
                      . .+|.+...   .....+.+|+.++|.|.+.|.|.|. |+|++++..                                
T Consensus       418 ~-~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  496 (772)
T 3v2a_R          418 Y-VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNK  496 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             e-cCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCc
Confidence            5 44444322   1222478899999999999999996 999997332                                


Q ss_pred             cCCC-CceEEeec----CeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEE
Q psy11143        270 LDSD-DHVTYEHD----GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC  344 (940)
Q Consensus       270 l~~~-~~~~~~~~----g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C  344 (940)
                      +... .+..+...    ...|.|.++  +|+|.|+|.|.|..|..+..+.+.|.  .+|.+...|. ..+.+|++++|.|
T Consensus       497 i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~--~~p~i~~~p~-~~~~~G~~v~l~C  571 (772)
T 3v2a_R          497 IEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVT--RGPEITLQPD-MQPTEQESVSLWC  571 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEE--CCceeeccCC-cccccCCceEEEE
Confidence            1110 01111111    134777766  78999999999999988887777775  4677666554 4578999999999


Q ss_pred             eecCcCCCeEEEEeCCeeeccCCcEEEe-------------------e----eceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        345 KPDGEPLPRISWSKDEAEFVEDRNHKIH-------------------R----TGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       345 ~v~g~P~p~i~W~k~g~~i~~~~~~~i~-------------------~----~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      .+.+.|.|.|.|+|++..+.........                   .    ..+|.|.++..+|+|.|+|.|.|..|..
T Consensus       572 ~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  651 (772)
T 3v2a_R          572 TADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKK  651 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCe
Confidence            9999999999999998765432211110                   1    1249999999999999999999976544


Q ss_pred             E--EEEEEEEe--cCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCccccc-------c
Q psy11143        402 V--AEGYLTVT--GENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQD-------H  470 (940)
Q Consensus       402 ~--~s~~L~V~--~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~~~~-------~  470 (940)
                      .  ....|.|.  .+|..      ...+.......++...    ..|....++..  +++|++++.+.....       .
T Consensus       652 ~~s~~~~l~v~~~~~P~~------~~~~~~~~v~~g~~~~----l~C~~~g~P~p--~v~W~k~g~~l~~~~~~~~~~~~  719 (772)
T 3v2a_R          652 RHCVVRQLTVLERVAPTI------TGNLENQTTSIGESIE----VSCTASGNPPP--QIMWFKDNETLVEDSGIVLKDGN  719 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEeecccccCCCEe------ecCCCceEEeCCCCEE----EEEEeCccCCC--eEEEEECCeECcCCCCeEEcCCC
Confidence            3  24455553  33322      2222222233444433    34544444433  678999886543110       1


Q ss_pred             ccceeeeeccCCccceeeeccchhhhhheeeEEEEe
Q psy11143        471 GSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQ  506 (940)
Q Consensus       471 ~~ll~l~r~p~~~~~~~~~Aa~~fg~t~~~i~~~v~  506 (940)
                      +.|...-....|.|.|.|.|.+..|.....+...|.
T Consensus       720 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  755 (772)
T 3v2a_R          720 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE  755 (772)
T ss_dssp             ------------------------------------
T ss_pred             cEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEE
Confidence            112211112357799999999999988765554444

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=2.5e-37  Score=370.82  Aligned_cols=439  Identities=16%  Similarity=0.217  Sum_probs=309.0

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCC---eEEEEECCEeec--------------CCCCeEEEe---ec-eEEEEcccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLD--------------SDDHVTYEH---DG-FVLVLNGVR  107 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p---~V~W~kdg~~I~--------------~~~~~~~~~---~g-s~L~I~~v~  107 (940)
                      +..|..+.+.+|++++|.|.+.+.|.+   .|.|+|++..+.              ...+..+..   ++ ..|.|.+++
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   83 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence            445778899999999999999887654   899999985321              012333321   22 358999999


Q ss_pred             cCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCC-CCCeEEEeeCCeeccc-----
Q psy11143        108 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVE-----  181 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p~ItW~k~g~~i~~-----  181 (940)
                      .+|+|.|+|.|.|..+.....+.|.|..  +|.+...+....+.+|+.+.|.|.+.+. |.+.+.|++++.....     
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~--~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~  161 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLSFDVSLEVSQ--GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDS  161 (585)
T ss_pred             cccCEEEEEEcccCCCCceEEEEEEEec--CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecC
Confidence            9999999999999888776676676654  5667777888899999999999999964 4568999998754210     


Q ss_pred             --------cCceEEeeec------eEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeE
Q psy11143        182 --------DRNHKIHRTG------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTS  247 (940)
Q Consensus       182 --------~~~~~~~~~~------sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v  247 (940)
                              ..+..+...+      +|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+|      ....+.+|+.+
T Consensus       162 ~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p------~~~~~~~G~~v  235 (585)
T 2ocw_A          162 SGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEP------ELVYEDLRGSV  235 (585)
T ss_pred             CcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCC------ceeEEcCCCcE
Confidence                    2333443333      699999999999999999999999888888888875433      34567799999


Q ss_pred             EEEEEEeeeCC---CeEEEE-ECCee---c-C--------CCCceEEee---cCe-EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        248 RITCLVEGHPL---PQMTWF-HDGNS---L-D--------SDDHVTYEH---DGF-VLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       248 ~L~C~v~G~P~---p~ItW~-k~g~~---l-~--------~~~~~~~~~---~g~-sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .|.|.+ +.|.   +.+.|+ ++|..   + .        ...++.+..   ++. +|.|.++..+|+|.|+|.|.|..+
T Consensus       236 ~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~  314 (585)
T 2ocw_A          236 TFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ  314 (585)
T ss_pred             EEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCC
Confidence            999997 4444   688897 88732   1 1        123344332   332 599999999999999999999633


Q ss_pred             Cce----eEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeE----EEEe--CCe--eecc---------C
Q psy11143        308 SAE----SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI----SWSK--DEA--EFVE---------D  366 (940)
Q Consensus       308 s~~----~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i----~W~k--~g~--~i~~---------~  366 (940)
                      ...    ..+.|.|.  .+|.+...+....+.+|++++|.|.+.+.|.|.+    .|++  +|.  .+..         .
T Consensus       315 ~~~~~~~~~~~l~V~--~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~  392 (585)
T 2ocw_A          315 LQEGSPIQAWQLFVN--EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYE  392 (585)
T ss_pred             ccccCceeeEEEEEe--cccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccC
Confidence            332    55555554  6788877788888999999999999999999977    7999  886  4432         3


Q ss_pred             CcEEEee---ece--EEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCCCCCCCCCCCCCCCCCCccccccceeee
Q psy11143        367 RNHKIHR---TGS--LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAV  441 (940)
Q Consensus       367 ~~~~i~~---~~s--L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~  441 (940)
                      .++.+..   +++  |.|.+++.+|+|.|+|.| |..|.....+.|.|...+.....      +.......++.....|.
T Consensus       393 ~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~------~~~~~v~~G~~v~L~C~  465 (585)
T 2ocw_A          393 GRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKV------PGNVTAVLGETLKVPCH  465 (585)
T ss_pred             CCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcccccc------CCceeEecCCcEEEEEE
Confidence            3554442   343  999999999999999999 99999999999999875322211      22233344555444444


Q ss_pred             eecccccCcccceEEEeccCCCCccccc------------cccceeeeec----cCCccceeeeccchhhhhhee-eEEE
Q psy11143        442 KLASREVDAAVNATINSLFGYHSNEQQD------------HGSLMKLLRF----PDESARTVVRAADVYERTLSH-IKKH  504 (940)
Q Consensus       442 ~~~~~~~d~~in~t~~~lf~~~~~~~~~------------~~~ll~l~r~----p~~~~~~~~~Aa~~fg~t~~~-i~~~  504 (940)
                      +.+....++  ...+.|++++.......            .......|.+    ..+.|.|.|.|.+..|..... +...
T Consensus       466 ~~~~~~~~p--~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~  543 (585)
T 2ocw_A          466 FPCKFSSYE--KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVA  543 (585)
T ss_pred             ecCCCCCCc--cEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEE
Confidence            322222222  34778999885432100            0010112222    347799999999998755432 4444


Q ss_pred             Eee
Q psy11143        505 IQA  507 (940)
Q Consensus       505 v~~  507 (940)
                      |..
T Consensus       544 V~~  546 (585)
T 2ocw_A          544 VEE  546 (585)
T ss_pred             EEe
Confidence            443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=6.6e-38  Score=371.05  Aligned_cols=408  Identities=13%  Similarity=0.184  Sum_probs=279.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Eeec------------CCCCeEEEe--eceEEEEcccccCCCe
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSLD------------SDDHVTYEH--DGFVLVLNGVRESDAG  112 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~I~------------~~~~~~~~~--~gs~L~I~~v~~~DsG  112 (940)
                      ..+|..+.+.+|++++|.|.+.+.|.+.|.|+|++  ..+.            ...++....  ....|.|.+++.+|+|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (523)
T 2rcj_C            4 LTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDES   83 (523)
T ss_pred             cccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCE
Confidence            45577889999999999999999999999999975  2111            012333221  2246899999999999


Q ss_pred             EEEEEEEeCCCce---EEEEEEEEec--ccCCeeEecCCceeecCCCcEEEEEEeCCCCCC--eEEEeeCCeeccccCce
Q psy11143        113 VYNCVAQNSEGSA---ESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNH  185 (940)
Q Consensus       113 ~YtC~a~n~~g~~---~~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k~g~~i~~~~~~  185 (940)
                      .|+|.|.|..|..   ...+.|.|..  ..+|.+...+....+.+|+.+.|.|.+.|.|++  .|+|+++|..+......
T Consensus        84 ~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  163 (523)
T 2rcj_C           84 DYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVET  163 (523)
T ss_pred             EEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEe
Confidence            9999999987642   2345666643  235667777777777889999999999997754  99999999877543221


Q ss_pred             E---------EeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec---CCCCeeeeCCCeeEEecCCeEEEEEEE
Q psy11143        186 K---------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT---GAPPIFIQRPVSTTYSTGSTSRITCLV  253 (940)
Q Consensus       186 ~---------~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~---~~~p~~~~~p~~~~v~~G~~v~L~C~v  253 (940)
                      .         ......|.|.++..+|+|.|+|.|.|..+.......+.+.   ..+|.+...+....+.+|+.+.|.|.+
T Consensus       164 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~  243 (523)
T 2rcj_C          164 TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLV  243 (523)
T ss_pred             ccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEE
Confidence            1         1112469999999999999999999988876555544321   244555544444566899999999999


Q ss_pred             eee-CCC-eEEEEECCeecCCCCceEE-eecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeE
Q psy11143        254 EGH-PLP-QMTWFHDGNSLDSDDHVTY-EHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL  325 (940)
Q Consensus       254 ~G~-P~p-~ItW~k~g~~l~~~~~~~~-~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i  325 (940)
                      .|. |.| .|+|+++|..+........ ..++     ..|.|.++..+| |.|+|.|.|..|.......+.|.  .+|.+
T Consensus       244 ~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~--~~P~~  320 (523)
T 2rcj_C          244 KDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPL--SLPSV  320 (523)
T ss_pred             eceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCC--cCceE
Confidence            986 878 8999999987543211111 1122     359999999999 99999999999987766666554  34554


Q ss_pred             -EEcCCcee-ecCCCeEEEEEeecCcCC----CeEEEEeCCeeeccCCcEE--------EeeeceEEEecCCCCCCeEEE
Q psy11143        326 -VVKPFDMR-APAGSSVEIPCKPDGEPL----PRISWSKDEAEFVEDRNHK--------IHRTGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       326 -~~~p~~~~-v~~G~~vtL~C~v~g~P~----p~i~W~k~g~~i~~~~~~~--------i~~~~sL~I~~v~~~D~G~Yt  391 (940)
                       +..|.... +.+|+.++|.|.+.|.|+    +.|+|+|+|..+.......        ....+.|.|..+..+|+|.|+
T Consensus       321 ~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~  400 (523)
T 2rcj_C          321 FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYK  400 (523)
T ss_pred             EecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEE
Confidence             44444333 788999999999998754    4999999998876443211        112346899999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEecCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCc
Q psy11143        392 CTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSN  465 (940)
Q Consensus       392 C~A~N~~G~~~~s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~  465 (940)
                      |.|.|..|.......|.+...  ....|.....+.......+..    ....|.+...++...+++|++++.+.
T Consensus       401 C~a~n~~~~~~~~~~~~~~~~--~~~~P~v~~~~~~~~~~~~~~----~~l~C~~~g~~p~~~~v~W~k~g~~~  468 (523)
T 2rcj_C          401 CKVSNKALPAPIEKTISKAKG--QPREPQVYTLPPSREEMTKNQ----VSLTCLVKGFYPSDIAVEWESNGQPE  468 (523)
T ss_pred             EEEeCCCCCCceeEEEEcccC--CCCCCEEEEeCCChHHccCCc----eEEEEEEEeeECCCCEEEEEECCEEC
Confidence            999999887665555553110  011111111111111111222    33455555443334588999998554

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=6.1e-38  Score=363.72  Aligned_cols=418  Identities=15%  Similarity=0.214  Sum_probs=289.7

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeE-----EEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQM-----TWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V-----~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      +...|....+.+|++++|.|.+.| |.|.+     .|+|++..+... ..      ..|.|.+++. |+| |+|.|.+..
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~-~~------~~l~i~~v~~-d~g-Y~C~a~~~~   71 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGN-NR------KVYELSNVQE-DSQ-PMCYSNCPD   71 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTT-TE------EEEEEEEECS-CBC-CEEEEEETT
T ss_pred             cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCC-Cc------eEEEEEeccc-CCe-eEEEEeCCC
Confidence            456788899999999999999999 88888     999988755421 11      2578999987 999 999998766


Q ss_pred             CceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCC---eEEEeeCCeeccccCceEEeeeceEEEeecc
Q psy11143        123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP---RISWSKDEAEFVEDRNHKIHRTGSLRLYNIG  199 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p---~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~  199 (940)
                      +.....+.|.|.. ++..+...+.+..+.+|+++.|.|.+.+.|.+   .|+|++++..+..........++.|.|.++.
T Consensus        72 ~~~~~~~~l~V~~-~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~  150 (450)
T 1z7z_I           72 GQSTAKTFLTVYW-TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRR  150 (450)
T ss_dssp             EEEEEECEEEEEB-CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCS
T ss_pred             CcceeEEEEEEEe-CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeec
Confidence            6666677777765 22234466677889999999999999998888   8999999988865432222234589999999


Q ss_pred             cCCCceEEEEEEcCCccee--------eeeeeeecCC---CCeeeeCCCeeEEecCCeEEEEEEEeee-C--CCeEEEEE
Q psy11143        200 PQDSGLYRCTASNLLGEDV--------AEGYLTVTGA---PPIFIQRPVSTTYSTGSTSRITCLVEGH-P--LPQMTWFH  265 (940)
Q Consensus       200 ~~DsG~YtC~a~N~~g~~s--------~s~~L~V~~~---~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P--~p~ItW~k  265 (940)
                      .+|+|.|+|.|.|..|...        ....+.|...   +|.+..   ...+.+|+.+.|.|.+.|. |  .+.+.|++
T Consensus       151 ~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~  227 (450)
T 1z7z_I          151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL  227 (450)
T ss_dssp             SCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEE
T ss_pred             cccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeC
Confidence            9999999999999877532        3334444422   222221   1678899999999999998 7  78999999


Q ss_pred             CCeecCCCCceEEeecCeEEE-EeeeccCCCe--EEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEE
Q psy11143        266 DGNSLDSDDHVTYEHDGFVLV-LNGVRESDAG--VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI  342 (940)
Q Consensus       266 ~g~~l~~~~~~~~~~~g~sL~-I~~v~~~DsG--~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL  342 (940)
                      ++..+..  ++....++..+. ..++..+|+|  .|+|.|.|..|.....+.|.|....+|.+...  ...+.+|+.++|
T Consensus       228 ~~~~~~~--~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v~l  303 (450)
T 1z7z_I          228 GDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT--KPEVSEGTEVTV  303 (450)
T ss_dssp             TTEECCC--EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES--CSEEETTCEEEE
T ss_pred             CCEeCCc--eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC--CeeEeCCCcEEE
Confidence            9998876  333333332222 2267899999  99999999999988888888887667777654  348899999999


Q ss_pred             EEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe----eEEEEEEEEEecCCCCCCC
Q psy11143        343 PCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG----EDVAEGYLTVTGENSVEPA  418 (940)
Q Consensus       343 ~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G----~~~~s~~L~V~~~~~~~~~  418 (940)
                      .|.+.  |.|.++|  +|..+....     ...+|.|..+..+|+|.|+|.|.|..|    ....++.|.|..+|.+...
T Consensus       304 ~C~~~--p~p~i~W--~g~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~  374 (450)
T 1z7z_I          304 KCEAH--PRAKVTL--NGVPAQPLG-----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER  374 (450)
T ss_dssp             EEEC--------------------C-----CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCST
T ss_pred             EEecC--CCCEeEE--CCEEcCCCC-----ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeec
Confidence            99998  8899999  776662211     234799999999999999999997665    3447788888877653322


Q ss_pred             CCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCccccccccceeeeeccCCccceeeeccchhhhhh
Q psy11143        419 PHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDESARTVVRAADVYERTL  498 (940)
Q Consensus       419 p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~~~~~~~ll~l~r~p~~~~~~~~~Aa~~fg~t~  498 (940)
                      +.    |.......++.    ....|....++..  +++|++++....  ..+.++.  ....+.|.|.|.|.+.+|...
T Consensus       375 ~~----p~~~~~~~g~~----~~l~C~~~g~P~p--~i~W~~~g~~~~--~~g~~~~--v~~~d~G~Y~C~a~N~~G~~~  440 (450)
T 1z7z_I          375 DC----PGNWTWPENSQ----QTPMCQAWGNPLP--ELKCLKDGTFPL--PIGESVT--VTRDLEGTYLCRARSTQGEVT  440 (450)
T ss_dssp             TS----CSEEEEETTCE----ECCCCCCEEESCC--EEEEEETTTEEC--CTTSCEE--CCGGGCEEEEEEEEETTEEEE
T ss_pred             cC----CCceeEcCCCe----EEEEEecccCCCC--cEEEEECCcccC--CCCCeEe--EehhhCeEEEEEEEeCCCcee
Confidence            10    11111223333    2335555544443  678999886221  2233332  224577999999999999876


Q ss_pred             eeeEEEEe
Q psy11143        499 SHIKKHIQ  506 (940)
Q Consensus       499 ~~i~~~v~  506 (940)
                      ..+...|+
T Consensus       441 ~~~~l~V~  448 (450)
T 1z7z_I          441 REVTVNVL  448 (450)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            65554443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=1.3e-36  Score=350.83  Aligned_cols=359  Identities=16%  Similarity=0.276  Sum_probs=257.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCC----CeEEEEECC--Eee------------cCCCCeEEEee--ceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPL----PQMTWFHDG--NSL------------DSDDHVTYEHD--GFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~----p~V~W~kdg--~~I------------~~~~~~~~~~~--gs~L~I~~v~  107 (940)
                      +...|..+.+.+|++++|.|.+.+.|.    +.|.|+|++  ..+            ....++.....  ...|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            455678889999999999999988776    489999963  221            01234444422  3468999999


Q ss_pred             cCCCeEEEEEEEeCCCceE-EEEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCCeeccccC
Q psy11143        108 ESDAGVYNCVAQNSEGSAE-SVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDR  183 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g~~~-~~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g~~i~~~~  183 (940)
                      .+|+|.|+|.|.|..+... ..+.|.|.... +|.+...+....+.+|+.+.|.|.+.+ .|.+ .|+|+++|..+....
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  163 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  163 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCc
Confidence            9999999999999876432 24566665432 566666454444557889999999987 6777 999999998875541


Q ss_pred             ----------ceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEE
Q psy11143        184 ----------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV  253 (940)
Q Consensus       184 ----------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v  253 (940)
                                ...+...+.|.|.++..+|+|.|+|.|.|..+.......+.+. .++.....+....+.+|+.++|.|.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~G~~v~L~C~~  242 (438)
T 1qgc_4          164 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN-ECEVMLVESGGGLVKPGGSLKLSCTA  242 (438)
T ss_dssp             EEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETT-C-CCEEEEECCEEECTTCCEEEEEEE
T ss_pred             eeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccc-cceeEEecCCceEEecCCcEEEEEEE
Confidence                      1112234579999999999999999999988775444444332 22233344566788999999999999


Q ss_pred             eeeC--CCeEEEEEC--CeecC-----------------CCCceEEeec----CeEEEEeeeccCCCeEEEEEEEeCCC-
Q psy11143        254 EGHP--LPQMTWFHD--GNSLD-----------------SDDHVTYEHD----GFVLVLNGVRESDAGVYNCVAQNSEG-  307 (940)
Q Consensus       254 ~G~P--~p~ItW~k~--g~~l~-----------------~~~~~~~~~~----g~sL~I~~v~~~DsG~YtC~A~N~~G-  307 (940)
                      .|.|  .+.+.|+|+  +..+.                 ...++.+..+    ..+|.|.++..+|+|.|+|.|.|..+ 
T Consensus       243 ~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  322 (438)
T 1qgc_4          243 SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGD  322 (438)
T ss_dssp             ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSC
T ss_pred             cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCC
Confidence            9988  679999997  54332                 1244554432    23699999999999999999999544 


Q ss_pred             ----CceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeeccC--CcE----EEee
Q psy11143        308 ----SAESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVED--RNH----KIHR  373 (940)
Q Consensus       308 ----s~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~--~~~----~i~~  373 (940)
                          .......+.|..  ..+|.+...+....+.+|+.++|.|.+.|. |.| .|.|+++|..+...  ...    ....
T Consensus       323 ~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~  402 (438)
T 1qgc_4          323 EGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL  402 (438)
T ss_dssp             CCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEE
T ss_pred             ccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEE
Confidence                222344566653  245666555544567789999999999997 888 99999998776421  111    1112


Q ss_pred             eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       374 ~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      .+.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus       403 ~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~  436 (438)
T 1qgc_4          403 SSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  436 (438)
T ss_dssp             EEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence            3468999998889 999999999999877665543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=8.8e-36  Score=339.27  Aligned_cols=310  Identities=26%  Similarity=0.465  Sum_probs=257.8

Q ss_pred             ccEEEECCC-----CCCCCeEEEEEEEcCCc-e-EEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEE
Q psy11143          7 STELVISGV-----QREHGGRYSCVAGNPAG-V-YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW   79 (940)
Q Consensus         7 ~~tL~I~~v-----~~sDsG~Y~C~a~n~~g-~-~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W   79 (940)
                      +.+|.|.++     +.+|+|.|+|.+.+..+ . .+..+.+.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.|.|
T Consensus        76 ~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W  155 (403)
T 3laf_A           76 NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHW  155 (403)
T ss_dssp             TSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEE
T ss_pred             CCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEE
Confidence            567888888     77899999999996543 2 2345778888899988888999999999999999999999999999


Q ss_pred             EECCEeecC---CCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEEecccC----CeeEecCCceeec
Q psy11143         80 FHDGNSLDS---DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRA----PRLVVKPFDMRAP  151 (940)
Q Consensus        80 ~kdg~~I~~---~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~~----P~~~~~p~~~~v~  151 (940)
                      +|++..+..   ...... .....|.|.+++.+|+|.|+|.+.|..+.... ...+.|...+.    +.+...+....+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~  234 (403)
T 3laf_A          156 QKNQQDLNPIPGDSRVVV-LPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI  234 (403)
T ss_dssp             EESSSBCCCCTTCCSEEE-CTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEE
T ss_pred             EECCEeccccCCceEEEE-cCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEec
Confidence            999988743   222332 23345799999999999999999998776443 56666665432    2345566778889


Q ss_pred             CCCcEEEEEEeCCCCCCeEEEeeCCeecccc-CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCC
Q psy11143        152 AGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP  230 (940)
Q Consensus       152 ~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~-~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p  230 (940)
                      +|+.++|.|.+.+.|.+.+.|++++..+... .......++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|. .+|
T Consensus       235 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-~~p  313 (403)
T 3laf_A          235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-VPP  313 (403)
T ss_dssp             TTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE-EEE
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE-CCC
Confidence            9999999999999999999999999887643 34444556789999999999999999999999998889999988 677


Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      .+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+....+..+...+ .|.|.++..+|+|.|+|.|.|..|...
T Consensus       314 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~-~L~i~~v~~~d~G~Y~C~a~N~~G~~~  392 (403)
T 3laf_A          314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS-NLRILGVVKSDEGFYQCVAENEAGNAQ  392 (403)
T ss_dssp             EEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTT-EEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCc-cEEEeccccccCEEEEEEEEcCCceEE
Confidence            7778888888999999999999999999999999999999877776665444 599999999999999999999999999


Q ss_pred             eEEEEEEee
Q psy11143        311 SVAMIRING  319 (940)
Q Consensus       311 ~s~~l~V~~  319 (940)
                      .++.|.|..
T Consensus       393 ~~~~l~V~~  401 (403)
T 3laf_A          393 SSAQLIVPK  401 (403)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEEeC
Confidence            888888753

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=2.9e-36  Score=340.02  Aligned_cols=312  Identities=15%  Similarity=0.212  Sum_probs=244.3

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCEeec--------------CCCCeEEEe-----eceEEEEcccccCCCeEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--------------SDDHVTYEH-----DGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~--------------~~~~~~~~~-----~gs~L~I~~v~~~DsG~Y  114 (940)
                      .+.+.+|+.++|.|.+.+.|.+.|.|+|++..+.              ...++.+..     ....|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            4578899999999999999999999999986421              011222111     244589999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEE
Q psy11143        115 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR  194 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~  194 (940)
                      +|.+.|..+    .+.|.|..     +...+ ...+.+|++++|.|.+.+.|.+.++|++++..+       ......|.
T Consensus        83 ~C~~~n~~~----~~~l~V~~-----~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-------~~~~~~L~  145 (363)
T 1wio_A           83 ICEVEDQKE----EVQLLVFG-----LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTLS  145 (363)
T ss_dssp             EEEETTEEE----EEEEEEEE-----EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCE-------EEESSEEE
T ss_pred             EEEEEECCC----cEEEEEEe-----CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc-------cccceEEE
Confidence            999987632    45555543     22333 346789999999999999999999999987654       23456899


Q ss_pred             EeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEee-----eCCCeEEEEECCee
Q psy11143        195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-----HPLPQMTWFHDGNS  269 (940)
Q Consensus       195 I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G-----~P~p~ItW~k~g~~  269 (940)
                      |.+++.+|+|.|+|.|.|..+.....+.+.|...++ .   +....+.+|+.+.|.|.+.+     +|.|.|+|+++|..
T Consensus       146 i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~-~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~  221 (363)
T 1wio_A          146 VSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK-A---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERAS  221 (363)
T ss_dssp             ECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC-S---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCC
T ss_pred             EeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC-C---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCC
Confidence            999999999999999999877777777777773332 1   25567889999999998877     88899999999988


Q ss_pred             cCC--------CCceEEee-----------c-CeEEEEeeeccCCCeEEEEEEEeC--CCCceeEEEEEEeeccCCeEEE
Q psy11143        270 LDS--------DDHVTYEH-----------D-GFVLVLNGVRESDAGVYNCVAQNS--EGSAESVAMIRINGHRAPRLVV  327 (940)
Q Consensus       270 l~~--------~~~~~~~~-----------~-g~sL~I~~v~~~DsG~YtC~A~N~--~Gs~~~s~~l~V~~~~~P~i~~  327 (940)
                      +..        +.++.+..           + ..+|.|.++..+|+|.|+|.|.|.  .|.....+.|.|..        
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~--------  293 (363)
T 1wio_A          222 SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR--------  293 (363)
T ss_dssp             CCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE--------
T ss_pred             ccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE--------
Confidence            876        44444422           1 236999999999999999999999  99887777777751        


Q ss_pred             cCCceeecCCCeEEEEEeecCcCCCe--EEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGEPLPR--ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~P~p~--i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                             ..|+.++|.|.+.|.|.|.  |.|+|++..+..        .+.|.|.++..+|+|.|+|.|.|. |....+.
T Consensus       294 -------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~--------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~  357 (363)
T 1wio_A          294 -------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV--------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLES  357 (363)
T ss_dssp             -------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE--------EESSSEEEESSCCSEEEEEEECSS-SSCCEEE
T ss_pred             -------ecCCCeeEEEEEccccCCCccEEEEeCCCceee--------eeeeeeeeeccccceeEEEEEecC-CeEEEec
Confidence                   1288999999999999998  999999977642        346788999999999999999975 6666677


Q ss_pred             EEEEe
Q psy11143        406 YLTVT  410 (940)
Q Consensus       406 ~L~V~  410 (940)
                      .|.|.
T Consensus       358 ~~~V~  362 (363)
T 1wio_A          358 NIKVL  362 (363)
T ss_dssp             EEEEC
T ss_pred             ceEec
Confidence            77664

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.5e-35  Score=337.39  Aligned_cols=308  Identities=25%  Similarity=0.432  Sum_probs=242.2

Q ss_pred             ccEEEECCC-CCCCCeEEEEEEEcCCceEE-EEEEEEEeCCCeEEe-CCCcEEEecCCeEEEEEEee-ccCCCeEEEEEC
Q psy11143          7 STELVISGV-QREHGGRYSCVAGNPAGVYR-GDLHVTVNAPPIFIQ-RPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHD   82 (940)
Q Consensus         7 ~~tL~I~~v-~~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~pP~~~~-~p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kd   82 (940)
                      +++|.|.++ +.+|+|.|+|.|.|..|... ....+.|...+.+.. .+..+.+.+|+.+.|.|.+. +.|.+.+.|+++
T Consensus        61 ~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~  140 (384)
T 3kld_A           61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN  140 (384)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEET
T ss_pred             CCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEEC
Confidence            356777776 78999999999999998653 345555544443333 33557899999999999864 467789999999


Q ss_pred             CEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE---EEEEEEe-----cccCCeeE-ecCCceeecCC
Q psy11143         83 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES---VAMIRIN-----GHRAPRLV-VKPFDMRAPAG  153 (940)
Q Consensus        83 g~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~---~~~L~V~-----~~~~P~~~-~~p~~~~v~~G  153 (940)
                      +..+....+.........|.|.+++.+|+|.|+|.|.|..+....   ...+.+.     ....|.+. ..+....+.+|
T Consensus       141 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G  220 (384)
T 3kld_A          141 EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG  220 (384)
T ss_dssp             TEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETT
T ss_pred             CCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCC
Confidence            998765444444434445799999999999999999998876543   1222222     11123333 34556778999


Q ss_pred             CcEEEEEEeCCCCCCeEEEeeC-CeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCee
Q psy11143        154 SSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF  232 (940)
Q Consensus       154 e~vtL~C~v~g~P~p~ItW~k~-g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~  232 (940)
                      +++.|.|.+.|.|.|.+.|+++ +..+... ......++.|.|.+++.+|+|.|+|.|.|..|.......|.|. .+|.+
T Consensus       221 ~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~-~~P~~  298 (384)
T 3kld_A          221 TTVKLECFALGNPVPTILWRRADGKPIARK-ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY-AQPNW  298 (384)
T ss_dssp             SCEEEEEEEEEESCCEEEEEETTCCCCCTT-CEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE-EEEEE
T ss_pred             CcEEEEEEEeecCCCcEEEEeCCCcccccc-ceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEe-cCCcc
Confidence            9999999999999999999995 4444332 2222345689999999999999999999999999888889888 56777


Q ss_pred             eeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeE
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV  312 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s  312 (940)
                      ...+....+..|+.+.|.|.+.|.|.|.|+|+|+|..+....++.+. ++ +|.|.++..+|+|.|+|.|.|..|....+
T Consensus       299 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~-~~-~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~  376 (384)
T 3kld_A          299 VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE-QG-TLNITIVNLSDAGMYQCVAENKHGVIFSS  376 (384)
T ss_dssp             EECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE-TT-EEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe-CC-EEEEeecChhhCEEEEEEEEeCCceEEec
Confidence            77788889999999999999999999999999999999877776653 33 59999999999999999999999999999


Q ss_pred             EEEEEe
Q psy11143        313 AMIRIN  318 (940)
Q Consensus       313 ~~l~V~  318 (940)
                      +.|.|.
T Consensus       377 a~L~V~  382 (384)
T 3kld_A          377 AELSVI  382 (384)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            998885

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=7.4e-34  Score=307.74  Aligned_cols=272  Identities=28%  Similarity=0.526  Sum_probs=235.6

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEe---eeceEEEeecccCCCceEEEEEEcC
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~---~~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      .+|.+...|.+..+.+|+.++|.|.+.+.|.+.++|++++..+....++...   ....|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~   83 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV   83 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEEC
Confidence            4678888899999999999999999999999999999999988776655443   2457999999999999999999999


Q ss_pred             CcceeeeeeeeecCCCCeeee-CCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEee--cCeEEEEeee
Q psy11143        214 LGEDVAEGYLTVTGAPPIFIQ-RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--DGFVLVLNGV  290 (940)
Q Consensus       214 ~g~~s~s~~L~V~~~~p~~~~-~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~--~g~sL~I~~v  290 (940)
                      .|..+..+.|.|. .+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+.....  ....|.|.++
T Consensus        84 ~g~~~~~~~l~V~-~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  162 (284)
T 2rik_A           84 AGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNL  162 (284)
T ss_dssp             TEEEEEEEEEEEE-CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSC
T ss_pred             CceEEEEEEEEcc-CCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCC
Confidence            9998888999998 4555444 3455678899999999999999999999999999998776655432  3356999999


Q ss_pred             ccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEE
Q psy11143        291 RESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK  370 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~  370 (940)
                      ..+|+|.|+|.|.|..|....++.|.|.  .+|.+...+....+.+|++++|.|.+.|.|.|.|.|++++..+....++.
T Consensus       163 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~--~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~  240 (284)
T 2rik_A          163 SVEDSGDYTCEAHNAAGSASSSTSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK  240 (284)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEE--CCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEE
T ss_pred             CcccCEEEEEEEEcCCCceeEEEEEEEe--cCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEE
Confidence            9999999999999999988777777775  67888877888889999999999999999999999999999998887777


Q ss_pred             Eeee---ceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        371 IHRT---GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       371 i~~~---~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      +...   .+|.|.++..+|+|.|+|.|.|..|..+.++.|.|++
T Consensus       241 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          241 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             EEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence            6654   4799999999999999999999999999999999863

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.6e-33  Score=305.07  Aligned_cols=273  Identities=27%  Similarity=0.504  Sum_probs=235.4

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEe
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      ..||.|...|....+.+|+.++|.|.+.+.|.+.|+|+|++..+....+.++.  .+...|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            46899999999999999999999999999999999999999999877666555  3346689999999999999999999


Q ss_pred             CCCceEEEEEEEEecccCCeeEecC-CceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEee---eceEEEe
Q psy11143        121 SEGSAESVAMIRINGHRAPRLVVKP-FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLY  196 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~~~~P~~~~~p-~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~---~~sL~I~  196 (940)
                      ..|.....+.|.|..  +|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.....   ...|.|.
T Consensus        83 ~~g~~~~~~~l~V~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (284)
T 2rik_A           83 VAGKDSCSAQLGVQE--PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMY  160 (284)
T ss_dssp             TTEEEEEEEEEEEEC--CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEEC
T ss_pred             CCceEEEEEEEEccC--CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEC
Confidence            988877777777764  45555443 34568899999999999999999999999999887666554432   3479999


Q ss_pred             ecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCce
Q psy11143        197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV  276 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~  276 (940)
                      +++.+|+|.|+|.+.|..|.....+.|.|. .+|.+...+....+..|+.+.|.|.+.|.|.|.++|++++..+....++
T Consensus       161 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~  239 (284)
T 2rik_A          161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVK-EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY  239 (284)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEEEEE-CCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTE
T ss_pred             CCCcccCEEEEEEEEcCCCceeEEEEEEEe-cCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCE
Confidence            999999999999999999998888999998 6677777777888999999999999999999999999999999888777


Q ss_pred             EEeecC--eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        277 TYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       277 ~~~~~g--~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .+...+  ..|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       240 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            766554  459999999999999999999999999888888775

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.4e-34  Score=329.16  Aligned_cols=311  Identities=24%  Similarity=0.440  Sum_probs=248.2

Q ss_pred             cccEEEEC----CCCCCCCeEEEEEEEcCCceEE-EEEEEEEeCCCeEEe-CCCcEEEecCCeEEEEEEe-eccCCCeEE
Q psy11143          6 SSTELVIS----GVQREHGGRYSCVAGNPAGVYR-GDLHVTVNAPPIFIQ-RPVSTTYSTGSTSRITCLV-EGHPLPQMT   78 (940)
Q Consensus         6 s~~tL~I~----~v~~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~pP~~~~-~p~~~~V~eGesv~L~C~v-~g~P~p~V~   78 (940)
                      .+.+|.|.    +++.+|+|.|+|.|.|..|... ..+.|.|..+|.+.. .+....+.+|+.++|.|.+ .+.|.+.+.
T Consensus        71 ~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~  150 (404)
T 3p3y_A           71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIF  150 (404)
T ss_dssp             SSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEE
T ss_pred             CCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEE
Confidence            45566665    8899999999999999988764 668888888776543 3456889999999999999 788999999


Q ss_pred             EEECCEee-cCCCCeEEEeeceEEEEcccccCC-CeEEEEEEEeCCCceEE---EEEEEEeccc-----CCeeEecC---
Q psy11143         79 WFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESD-AGVYNCVAQNSEGSAES---VAMIRINGHR-----APRLVVKP---  145 (940)
Q Consensus        79 W~kdg~~I-~~~~~~~~~~~gs~L~I~~v~~~D-sG~YtC~a~n~~g~~~~---~~~L~V~~~~-----~P~~~~~p---  145 (940)
                      |++++... ..........++ .|.|.+++.+| +|.|+|.+.|..+....   ...+.|....     .|.+....   
T Consensus       151 W~~~~~~~~~~~~~~~~~~~~-~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~  229 (404)
T 3p3y_A          151 WMSSSMEPITQDKRVSQGHNG-DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTA  229 (404)
T ss_dssp             EECTTSCBCCCCSSEEECTTS-CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSE
T ss_pred             EeCCCccccCCCCcEEEcCCC-cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCC
Confidence            99987543 333344433444 46999999999 59999999998876543   2344544221     22322221   


Q ss_pred             CceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeee
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  225 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V  225 (940)
                      ....+.+|+.+.|.|.+.+.|.+.++|++++..+..........++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  309 (404)
T 3p3y_A          230 SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV  309 (404)
T ss_dssp             EEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEE
Confidence            24568899999999999999999999999999887655544444678999999999999999999999999888888988


Q ss_pred             cCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCC-ceEEeecCeEEEEeeeccCCCeEEEEEEEe
Q psy11143        226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQN  304 (940)
Q Consensus       226 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~-~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N  304 (940)
                      . .+|.+...+....+.+|+.++|.|.+.|+|.|.++|+++|..+.... .......+.+|.|.++..+|+|.|+|.|.|
T Consensus       310 ~-~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  388 (404)
T 3p3y_A          310 K-AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSN  388 (404)
T ss_dssp             E-EEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEE
T ss_pred             e-CCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEe
Confidence            8 56777788888899999999999999999999999999999987543 122223444699999999999999999999


Q ss_pred             CCCCceeEEEEEEe
Q psy11143        305 SEGSAESVAMIRIN  318 (940)
Q Consensus       305 ~~Gs~~~s~~l~V~  318 (940)
                      ..|....++.|.|.
T Consensus       389 ~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          389 EHGYLLANAFVSVL  402 (404)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEE
Confidence            99999988888774

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=329.62  Aligned_cols=299  Identities=15%  Similarity=0.219  Sum_probs=215.0

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEe
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS   85 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~   85 (940)
                      ...+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+.. .....+..|+.+.|.|.+.|+|.|.|+|+|++..
T Consensus       101 ~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~  179 (423)
T 3qs7_E          101 GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQ  179 (423)
T ss_dssp             CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC---
T ss_pred             eEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccc-cCCcEeccCCceEEEEEEeeecCCeEEEEECCCC
Confidence            345799999999999999999999999988889999987775532 1233456788999999999999999999999876


Q ss_pred             ecCCCC---eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEe
Q psy11143         86 LDSDDH---VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP  162 (940)
Q Consensus        86 I~~~~~---~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v  162 (940)
                      +.....   ..+......     +...|+|.|+|.|.|..|.... ..+.+.+...|.+  .+.+..+.+|+.+.|.|.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~-----l~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~  251 (423)
T 3qs7_E          180 GESCKEESPAVVKKEEKV-----LHELFGTDIRCCARNELGRECT-RLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKA  251 (423)
T ss_dssp             ----------CEEECCSE-----ECCCCSSCEEEEEECSSCEEEE-ECEEEESSSCCCS--STTEEEEETTSCEEEEEEE
T ss_pred             CccccccccccccccceE-----EecccCeEEEEEEEcCCCCcce-eeEEEEEecCCcc--CCCceEEeCCCeEEEEEEE
Confidence            532110   001111111     1678999999999999987655 2344444334433  4457789999999999999


Q ss_pred             CC-CCCCeEEEeeCCeeccccCce---------EEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCee
Q psy11143        163 DG-EPLPRISWSKDEAEFVEDRNH---------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF  232 (940)
Q Consensus       163 ~g-~P~p~ItW~k~g~~i~~~~~~---------~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~  232 (940)
                      .| .|.+.|+|++++..+......         .....++|.|.+++.+|+|.|+|.|.|.   .+..+.|.|. .+|.+
T Consensus       252 ~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~-~~p~i  327 (423)
T 3qs7_E          252 VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIV-EKGFI  327 (423)
T ss_dssp             EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEE-SSCEE
T ss_pred             EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEE-eCCcc
Confidence            98 677999999999877543211         1233457999999999999999999997   6677788887 44555


Q ss_pred             eeCC--CeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        233 IQRP--VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       233 ~~~p--~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      ...+  ....+.+|+++.|.|.+.|+|.|.|+|+|+|..+......  ..++..+.+.....+|+|.|+|.|.|..|...
T Consensus       328 ~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~  405 (423)
T 3qs7_E          328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--LDNGYSISKFCNHKHQPGEYIFHAENDDAQFT  405 (423)
T ss_dssp             EEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB--CSSSSEEEEECCCTTCCSCEEEEEEETTEEEE
T ss_pred             eEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccc--ccCCcEEEEEecccccCEEEEEEEEcCCceEE
Confidence            5444  4566788999999999999999999999999998654311  01122233356678999999999999999999


Q ss_pred             eEEEEEEee
Q psy11143        311 SVAMIRING  319 (940)
Q Consensus       311 ~s~~l~V~~  319 (940)
                      .++.|.|..
T Consensus       406 ~s~~L~v~~  414 (423)
T 3qs7_E          406 KMFTLNIRS  414 (423)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEEEec
Confidence            888888875

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=3.9e-34  Score=323.82  Aligned_cols=306  Identities=25%  Similarity=0.433  Sum_probs=244.7

Q ss_pred             ccEEEECCCCC-CCCeEEEEEEEcCCceEEE-EEEEEEeCCCeEEe-CCCcEEEecCCeEEEEEEe-eccCCCeEEEEEC
Q psy11143          7 STELVISGVQR-EHGGRYSCVAGNPAGVYRG-DLHVTVNAPPIFIQ-RPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHD   82 (940)
Q Consensus         7 ~~tL~I~~v~~-sDsG~Y~C~a~n~~g~~~~-~v~l~V~~pP~~~~-~p~~~~V~eGesv~L~C~v-~g~P~p~V~W~kd   82 (940)
                      +.+|.|.++.. +|+|.|+|.|.|..|.... .+.|.|..+|.+.. .+....+.+|+.++|.|.+ .+.|.+.|.|+++
T Consensus        60 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~  139 (382)
T 1cs6_A           60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN  139 (382)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEES
T ss_pred             CCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEEC
Confidence            46899999997 9999999999999886532 45566655454433 3567889999999999996 4678899999999


Q ss_pred             CEeec--CCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-----EEEEEEec----ccCCeeEe-cCCceee
Q psy11143         83 GNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-----VAMIRING----HRAPRLVV-KPFDMRA  150 (940)
Q Consensus        83 g~~I~--~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-----~~~L~V~~----~~~P~~~~-~p~~~~v  150 (940)
                      +..+.  ...+.........|.|.+++.+|+|.|+|.+.|..|....     ...+.+..    ...|.+.. .+....+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~  219 (382)
T 1cs6_A          140 EFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYA  219 (382)
T ss_dssp             STTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEE
T ss_pred             CCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEE
Confidence            87653  2233333334456799999999999999999998764333     23444432    12344444 3557789


Q ss_pred             cCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCC
Q psy11143        151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP  230 (940)
Q Consensus       151 ~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p  230 (940)
                      .+|+.++|.|.+.+.|.+.+.|++++..+...   .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|. .+|
T Consensus       220 ~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-~~p  295 (382)
T 1cs6_A          220 LTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH-AQP  295 (382)
T ss_dssp             ETTCCEEEECEEEEESCCEEEEEECCSCCSCC---CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE-EEE
T ss_pred             eCCCeEEEEEEEccCCCCEEEEEECCcccccE---EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEe-cCC
Confidence            99999999999999999999999988766431   12235679999999999999999999999998888888888 667


Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      .+...+....+..|+.+.|.|.+.|.|.|.++|+++|..+....++.+.  +..|.|.++..+|+|.|+|.|.|..|...
T Consensus       296 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  373 (382)
T 1cs6_A          296 DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--GGELRFSKLVLEDSGMYQCVAENKHGTVY  373 (382)
T ss_dssp             EEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE--TTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE--CCEEEECcCCcccCEEEEEEEEeCCCeEE
Confidence            7777778888999999999999999999999999999999887776653  33599999999999999999999999999


Q ss_pred             eEEEEEEe
Q psy11143        311 SVAMIRIN  318 (940)
Q Consensus       311 ~s~~l~V~  318 (940)
                      .++.|.|.
T Consensus       374 ~~~~l~V~  381 (382)
T 1cs6_A          374 ASAELTVQ  381 (382)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            88888875

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=4.1e-34  Score=324.10  Aligned_cols=301  Identities=24%  Similarity=0.410  Sum_probs=241.0

Q ss_pred             cccEEEECCCCCCC------CeEEEEEEEcCCceE-EEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCC---C
Q psy11143          6 SSTELVISGVQREH------GGRYSCVAGNPAGVY-RGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---P   75 (940)
Q Consensus         6 s~~tL~I~~v~~sD------sG~Y~C~a~n~~g~~-~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~---p   75 (940)
                      .+++|+|.+++.+|      +|.|+|.|.|..|.. +..+.|.|..+|.+...+....+.+|+.++|.|.+.+.+.   +
T Consensus        57 ~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~  136 (388)
T 2v5m_A           57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE  136 (388)
T ss_dssp             STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEE
T ss_pred             CCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcc
Confidence            45689999999998      999999999999864 3567788888888888888899999999999999987653   7


Q ss_pred             eEEEEECCEeecC-----CCCeEEEeeceEEEEcccccCCC-eEEEEEEEeCCCceEE-E---EEEEEecccC---Cee-
Q psy11143         76 QMTWFHDGNSLDS-----DDHVTYEHDGFVLVLNGVRESDA-GVYNCVAQNSEGSAES-V---AMIRINGHRA---PRL-  141 (940)
Q Consensus        76 ~V~W~kdg~~I~~-----~~~~~~~~~gs~L~I~~v~~~Ds-G~YtC~a~n~~g~~~~-~---~~L~V~~~~~---P~~-  141 (940)
                      .|.|++++..+..     ..+..+..++ .|.|.+++.+|+ |.|+|.+.|..+.... .   ..+.|.....   |.+ 
T Consensus       137 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~  215 (388)
T 2v5m_A          137 VVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP  215 (388)
T ss_dssp             EEEEEETTCCEECSSSCBTTTEEECTTS-CEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECC
T ss_pred             eEEEEeCCCcccccccCCCCcEEEccCC-cEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCc
Confidence            8999999987642     2233333334 469999999999 9999999998654332 1   2455543211   111 


Q ss_pred             EecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeecc------ccCceEEeeeceEEEeecccCCCceEEEEEEcCCc
Q psy11143        142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       142 ~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~------~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      ........+.+|+.++|.|.+.|.|.+.++|++++..+.      ...+. ...++.|.|.+++.+|+|.|+|.|.|..|
T Consensus       216 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  294 (388)
T 2v5m_A          216 ALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRV-KQVSGTLIIKDAVVEDSGKYLCVVNNSVG  294 (388)
T ss_dssp             SSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSE-EEETTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             cccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCce-ecccCEEEECcCCHHHCeEEEEEEecCCC
Confidence            112234568899999999999999999999999754322      12222 23456899999999999999999999999


Q ss_pred             ceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCC
Q psy11143        216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA  295 (940)
Q Consensus       216 ~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~Ds  295 (940)
                      ..+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.|.|+|+++|..+...        +.+|.|.++..+|+
T Consensus       295 ~~~~~~~l~V~-~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~--------~~~L~i~~v~~~d~  365 (388)
T 2v5m_A          295 GESVETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------ESVLRIESVKKEDK  365 (388)
T ss_dssp             EEEEEEEEEEE-EEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC--------SSEEEESSCCGGGC
T ss_pred             ceeEEEEEEEe-CCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC--------CCEEEEecCChhhC
Confidence            98888889888 5666677778888999999999999999999999999999988643        23599999999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEE
Q psy11143        296 GVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       296 G~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      |.|+|.|.|..|....++.|.|
T Consensus       366 G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          366 GMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEEEEcCCCcEEEEEEEEe
Confidence            9999999999999988888776

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=8.9e-34  Score=321.81  Aligned_cols=303  Identities=26%  Similarity=0.424  Sum_probs=236.0

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEE-EEEEEE--eCCCeEEeCCCcEEEecCCeEEEEEEe-eccCCCeEEEEE
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRG-DLHVTV--NAPPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFH   81 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~-~v~l~V--~~pP~~~~~p~~~~V~eGesv~L~C~v-~g~P~p~V~W~k   81 (940)
                      ..++|+|.+++.+|+|.|+|.|.|..|.... .+.+.|  ...|.+  .+....+.+|+.+.|.|.+ .+.|.+.|.|++
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~  137 (395)
T 1bih_A           60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKK  137 (395)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEE
T ss_pred             CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEe
Confidence            4568999999999999999999998886542 244443  333433  3456678899999999996 789999999999


Q ss_pred             CC---EeecC----CCCeEEEeeceEEEEcccccCCCe---EEEEEEEeCCCceEEEEEEEEec-c----------cCCe
Q psy11143         82 DG---NSLDS----DDHVTYEHDGFVLVLNGVRESDAG---VYNCVAQNSEGSAESVAMIRING-H----------RAPR  140 (940)
Q Consensus        82 dg---~~I~~----~~~~~~~~~gs~L~I~~v~~~DsG---~YtC~a~n~~g~~~~~~~L~V~~-~----------~~P~  140 (940)
                      ++   .....    ..+.....++ .|.|.+++.+|+|   .|+|.+.|..+............ .          ..|.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~-~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  216 (395)
T 1bih_A          138 RLSGADPNADVTDFDRRITAGPDG-NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ  216 (395)
T ss_dssp             EETTSCGGGCCCCCCTTEEECTTS-CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEE
T ss_pred             cCCCcCcccccccccccEEEcCCC-cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCce
Confidence            86   22111    2334444444 4699999999999   99999999988865533222111 1          0122


Q ss_pred             eEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEe-----eeceEEEeecccCCCceEEEEEEcCCc
Q psy11143        141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       141 ~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      +  .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......+.     ....|.|.+++.+|+|.|+|.|.|..|
T Consensus       217 ~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  294 (395)
T 1bih_A          217 Y--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG  294 (395)
T ss_dssp             E--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred             e--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCC
Confidence            2  356778999999999999999999999999999888654332221     112699999999999999999999998


Q ss_pred             ceee-eeeeeecCCCCeeeeCCCe-eEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccC
Q psy11143        216 EDVA-EGYLTVTGAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES  293 (940)
Q Consensus       216 ~~s~-s~~L~V~~~~p~~~~~p~~-~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~  293 (940)
                      .... .+.|.|. .+|.+...+.. ..+.+|+.++|.|.+.|.|.|.+.|+++|..+... ++.+. ++ .|.|.++..+
T Consensus       295 ~~~~~~~~l~V~-~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~-~~-~L~i~~~~~~  370 (395)
T 1bih_A          295 KPQKHSLKLTVV-SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT-DS-GLVIKGVKNG  370 (395)
T ss_dssp             SCEEEEEEEEEE-EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE-TT-EEEESSCCST
T ss_pred             CceEEEEEEEEE-cCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE-CC-EEEEeeCCcc
Confidence            8655 8888888 56777777766 78899999999999999999999999999998765 44443 23 6999999999


Q ss_pred             CCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        294 DAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       294 DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      |+|.|+|.|.|..|....++.|.|
T Consensus       371 d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          371 DKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             TCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCEEEEEEEEccCCCceEEEEEEE
Confidence            999999999999999988887776

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=299.56  Aligned_cols=274  Identities=28%  Similarity=0.511  Sum_probs=215.2

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEe-e---eceEEEeeccc-CCCceEEEEEE
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-R---TGSLRLYNIGP-QDSGLYRCTAS  211 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~-~---~~sL~I~~v~~-~DsG~YtC~a~  211 (940)
                      .+|.+...+.+..+.+|++++|.|.+.|.|.+.|+|++++..+......... .   ...|.|.+++. +|+|.|+|.+.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~   84 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQ   84 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEE
Confidence            4688888899999999999999999999999999999999887544322221 1   24699999998 99999999999


Q ss_pred             cCCcceeeeeeeeecCCC------CeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCC---ceEEeecC
Q psy11143        212 NLLGEDVAEGYLTVTGAP------PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG  282 (940)
Q Consensus       212 N~~g~~s~s~~L~V~~~~------p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~---~~~~~~~g  282 (940)
                      |..|..+..+.|.|...+      |.+...+....+..|+.+.|.|.+.|.|.+.++|++++..+....   ++....++
T Consensus        85 n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~  164 (304)
T 2yd9_A           85 NSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG  164 (304)
T ss_dssp             CSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTS
T ss_pred             CCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCe
Confidence            999988888888887431      667777888889999999999999999999999999999886542   33333344


Q ss_pred             eEEEEeeeccCCCeEEEEEEEeCCCCceeE-EEEEEee-ccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCC
Q psy11143        283 FVLVLNGVRESDAGVYNCVAQNSEGSAESV-AMIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE  360 (940)
Q Consensus       283 ~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s-~~l~V~~-~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g  360 (940)
                       .|.|.++..+|+|.|+|.|.|..|..... +.+.|.+ ..+|.+...+....+.+|++++|.|.+.|.|.|.|.|++++
T Consensus       165 -~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~  243 (304)
T 2yd9_A          165 -ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGA  243 (304)
T ss_dssp             -CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETT
T ss_pred             -EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECC
Confidence             59999999999999999999999876543 5566654 35788888888888999999999999999999999999999


Q ss_pred             eeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       361 ~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      ..+....... .....|.|.++  +|+|.|+|.|.|..|....++.|.|++++.
T Consensus       244 ~~l~~~~~~~-~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  294 (304)
T 2yd9_A          244 EDLTPEDDMP-VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPK  294 (304)
T ss_dssp             EECSCSSSCC-BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred             EECCCccccc-CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence            9887654432 12235667665  689999999999999999999999988754

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=1.5e-32  Score=318.49  Aligned_cols=348  Identities=15%  Similarity=0.235  Sum_probs=238.7

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEeec-----------------CCCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLD-----------------SDDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~I~-----------------~~~~~~~~~~----gs~L~I~  104 (940)
                      .+|..+.+.+|++++|.|.+.+.+  .+.|.|||+  +..+.                 ...++.+..+    ...|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (444)
T 1igt_B            5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMS   84 (444)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEEC
Confidence            345567899999999999998764  568999985  22210                 1234444432    2468999


Q ss_pred             ccccCCCeEEEEEEEeCCCce---EEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCCe
Q psy11143        105 GVRESDAGVYNCVAQNSEGSA---ESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEA  177 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~g~~---~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g~  177 (940)
                      +++.+|+|.|+|.+.|..+..   ...+.|.|...  ..|.+...+....+.+|+.++|.|.+.|. |.+ .|+|++++.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  164 (444)
T 1igt_B           85 RLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  164 (444)
T ss_dssp             SCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence            999999999999999976542   12356666532  23555444434446899999999999884 776 999999887


Q ss_pred             eccc--cCc----eEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec-----------------CCCCee-e
Q psy11143        178 EFVE--DRN----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT-----------------GAPPIF-I  233 (940)
Q Consensus       178 ~i~~--~~~----~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~-----------------~~~p~~-~  233 (940)
                      .+..  ...    ......+.|.|.++..+| |.|+|.|.|..+.......+.+.                 ..+|.+ .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~  243 (444)
T 1igt_B          165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFI  243 (444)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEE
T ss_pred             CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEe
Confidence            5321  000    112234579999999889 99999999998876555444331                 124444 3


Q ss_pred             eCCCeeE-EecCCeEEEEEEEeeeC----CCeEEEEECCeecCCCCce--EEeec-----CeEEEEeeeccCCCeEEEEE
Q psy11143        234 QRPVSTT-YSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDSDDHV--TYEHD-----GFVLVLNGVRESDAGVYNCV  301 (940)
Q Consensus       234 ~~p~~~~-v~~G~~v~L~C~v~G~P----~p~ItW~k~g~~l~~~~~~--~~~~~-----g~sL~I~~v~~~DsG~YtC~  301 (940)
                      ..+.... +.+|+.++|.|.+.|.|    .+.|+|++++..+......  ....+     ...|.|.++..+|+|.|+|.
T Consensus       244 ~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~  323 (444)
T 1igt_B          244 FPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCK  323 (444)
T ss_dssp             ECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEE
T ss_pred             cCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEE
Confidence            3333333 58899999999999984    3599999999887643221  11111     23599999999999999999


Q ss_pred             EEeCCCCceeEEEEEE--eeccCCeEEEcCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCeeeccCC--cEEEeee-
Q psy11143        302 AQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDR--NHKIHRT-  374 (940)
Q Consensus       302 A~N~~Gs~~~s~~l~V--~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~~i~~~~--~~~i~~~-  374 (940)
                      |.|..+.......+.+  ....+|.+...+.......+..++|.|.+.| .|.+ .|+|+|+|..+....  ......+ 
T Consensus       324 a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g  403 (444)
T 1igt_B          324 VNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDG  403 (444)
T ss_dssp             EECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTS
T ss_pred             EEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCC
Confidence            9999987744444433  4456888776554332233445999999998 5666 999999998774211  1111222 


Q ss_pred             -----ceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        375 -----GSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       375 -----~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                           +.|.|.....+|.|.|+|.|.|..
T Consensus       404 ~~~~~s~l~i~~~~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          404 SYFMYSKLRVEKKNWVERNSYSCSVVHEG  432 (444)
T ss_dssp             CEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             CEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence                 346666666678999999999974

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=5e-32  Score=297.19  Aligned_cols=272  Identities=29%  Similarity=0.518  Sum_probs=215.0

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eec--eEEEEccccc-CCCeEEEEE
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDG--FVLVLNGVRE-SDAGVYNCV  117 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~g--s~L~I~~v~~-~DsG~YtC~  117 (940)
                      ..+|.|...|.+..+.+|+.++|.|.+.|.|.+.|.|+|+|..+... +....  .++  ..|.|.+++. +|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            46899999999999999999999999999999999999999988643 33332  222  6789999998 999999999


Q ss_pred             EEeCCCceEEEEEEEEeccc-----CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccC---ceEEee
Q psy11143        118 AQNSEGSAESVAMIRINGHR-----APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR---NHKIHR  189 (940)
Q Consensus       118 a~n~~g~~~~~~~L~V~~~~-----~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~---~~~~~~  189 (940)
                      |.|..|.....+.|.|....     .|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....   +.....
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~  162 (304)
T 2yd9_A           83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR  162 (304)
T ss_dssp             EECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECT
T ss_pred             EECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCC
Confidence            99999987778888887642     1677778888889999999999999999999999999998876432   333445


Q ss_pred             eceEEEeecccCCCceEEEEEEcCCcceeee-eeeeec--CCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC
Q psy11143        190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAE-GYLTVT--GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD  266 (940)
Q Consensus       190 ~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s-~~L~V~--~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~  266 (940)
                      ++.|.|.+++.+|+|.|+|.|.|..|..... ..+.|.  ..+|.+...+....+.+|+.+.|.|.+.|.|.|.|+|+++
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~  242 (304)
T 2yd9_A          163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG  242 (304)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEET
T ss_pred             CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEEC
Confidence            6689999999999999999999998876532 444443  3567777777778899999999999999999999999999


Q ss_pred             CeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        267 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       267 g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      +..+.......  .....|.|.++  +|+|.|+|.|.|..|....++.|.|..
T Consensus       243 ~~~l~~~~~~~--~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~  291 (304)
T 2yd9_A          243 AEDLTPEDDMP--VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKS  291 (304)
T ss_dssp             TEECSCSSSCC--BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC---
T ss_pred             CEECCCccccc--CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            99987664432  12223666555  689999999999999998888877763

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-32  Score=294.17  Aligned_cols=273  Identities=22%  Similarity=0.450  Sum_probs=221.1

Q ss_pred             CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEee-CCeeccccCceEEeeec---eEEEeecccCCCceEEEEEEcC
Q psy11143        138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       138 ~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k-~g~~i~~~~~~~~~~~~---sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      .|.+...+.+..+.+|+.++|.|.+.+.|. .+.|++ ++..+....+..+...+   .|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~   82 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA   82 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecc
Confidence            577888889999999999999999999875 899999 67777666666665544   7999999999999999999998


Q ss_pred             Ccce-eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCC--CCceEEeecCeEEEEeee
Q psy11143        214 LGED-VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGV  290 (940)
Q Consensus       214 ~g~~-s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~--~~~~~~~~~g~sL~I~~v  290 (940)
                      .|.. +..+.|.|. .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..++....++. |.|.++
T Consensus        83 ~g~~~~~~~~l~v~-~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-L~i~~v  160 (291)
T 2wim_A           83 KGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-LQILNI  160 (291)
T ss_dssp             SSCEEEEEEEEEEE-CCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSC-EEETTC
T ss_pred             cCceEEEEEEEEec-CCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCC-EEEEec
Confidence            8875 456677776 556666667778899999999999999999999999999988764  34445444554 999999


Q ss_pred             ccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCC--ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCc
Q psy11143        291 RESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN  368 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~--~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~  368 (940)
                      ..+|+|.|+|.|.|..+.......+.+.+..+|.+...+.  ...+.+|+.++|.|.+.|.|.|.|.|+++|..+....+
T Consensus       161 ~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~  240 (291)
T 2wim_A          161 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK  240 (291)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTT
T ss_pred             chhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCcc
Confidence            9999999999999998766555555555556777665443  34678999999999999999999999999999887777


Q ss_pred             EEEee-eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        369 HKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       369 ~~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      +.+.. .++|.|.++..+|+|.|+|.|.|..|..++++.|.|..++
T Consensus       241 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          241 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             EEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred             EEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence            66544 4589999999999999999999999999999999998764

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.4e-31  Score=290.60  Aligned_cols=272  Identities=22%  Similarity=0.413  Sum_probs=220.4

Q ss_pred             CCeeEecCCceeecCCCcEEEEEEeCCCC-CCeEEEee-CCeecccc-CceEEe----eeceEEEeecccCCCceEEEEE
Q psy11143        138 APRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSK-DEAEFVED-RNHKIH----RTGSLRLYNIGPQDSGLYRCTA  210 (940)
Q Consensus       138 ~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P-~p~ItW~k-~g~~i~~~-~~~~~~----~~~sL~I~~v~~~DsG~YtC~a  210 (940)
                      ++.+.+.|.+..+.+|++++|.|.+.+.| .+.++|++ +|..+... .+..+.    ..+.|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            35677888889999999999999999976 68999999 77766533 333332    2457999999999999999999


Q ss_pred             EcCCcc-eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCC--CceEEeecCeEEEE
Q psy11143        211 SNLLGE-DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVL  287 (940)
Q Consensus       211 ~N~~g~-~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~--~~~~~~~~g~sL~I  287 (940)
                      .|..|. .+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...  .++....++ .|.|
T Consensus        82 ~n~~g~~~~~~~~l~v~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~L~i  159 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQI  159 (291)
T ss_dssp             ECTTSCEEEEEEEEEEE-CCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTS-CEEE
T ss_pred             EcCCCCeeEEEEEEEee-ccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCC-cEEE
Confidence            998854 4566777777 6677777888888999999999999999999999999999887543  333444444 4999


Q ss_pred             eeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCC--ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc
Q psy11143        288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE  365 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~--~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~  365 (940)
                      .++..+|+|.|+|.|.|..+.......+.+.+..+|.+...+.  ...+.+|+.++|.|.+.|.|.|.|.|++++..+..
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~  239 (291)
T 1qz1_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN  239 (291)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             ccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcC
Confidence            9999999999999999987555444445554456777776543  45788999999999999999999999999998875


Q ss_pred             CC----cEEEee-eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        366 DR----NHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       366 ~~----~~~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      ..    ++.+.. .++|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       240 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             C--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            53    444433 34799999999999999999999999999999999875

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=2.7e-31  Score=288.33  Aligned_cols=271  Identities=22%  Similarity=0.453  Sum_probs=218.5

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccC-CCeEEEEE-CCEeecCC-CCeEEE---eeceEEEEcccccCCCeEEEEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFH-DGNSLDSD-DHVTYE---HDGFVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~k-dg~~I~~~-~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a  118 (940)
                      |+.+...|....+.+|+.++|.|.+.+.| .+.|.|++ +|..+... .+..+.   .....|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            57788889999999999999999999876 68999999 78777643 334333   23456899999999999999999


Q ss_pred             EeCCCceE-EEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccc--cCceEEeeeceEEE
Q psy11143        119 QNSEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIHRTGSLRL  195 (940)
Q Consensus       119 ~n~~g~~~-~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~--~~~~~~~~~~sL~I  195 (940)
                      .|..|... ..+.|.|  ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..++....++.|.|
T Consensus        82 ~n~~g~~~~~~~~l~v--~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKI--FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (291)
T ss_dssp             ECTTSCEEEEEEEEEE--ECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEE
T ss_pred             EcCCCCeeEEEEEEEe--eccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEE
Confidence            99886532 3444444  4567788888888999999999999999999999999999887753  23444555678999


Q ss_pred             eecccCCCceEEEEEEcCCcce--eeeeeeeecCCCCeeeeCCC--eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecC
Q psy11143        196 YNIGPQDSGLYRCTASNLLGED--VAEGYLTVTGAPPIFIQRPV--STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD  271 (940)
Q Consensus       196 ~~v~~~DsG~YtC~a~N~~g~~--s~s~~L~V~~~~p~~~~~p~--~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~  271 (940)
                      .+++.+|+|.|+|.+.|..+..  .....+.|. .+|.+...+.  ...+..|+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~  238 (291)
T 1qz1_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVN-VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIE  238 (291)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEE-EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECC
T ss_pred             ccCccccCeEEEEEEEecCCCceeeEEEEEEEe-cCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECc
Confidence            9999999999999999876443  344556665 4555554433  4567889999999999999999999999999987


Q ss_pred             CCC----ceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        272 SDD----HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       272 ~~~----~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      ...    ++.....+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       239 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          239 NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             CC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            664    55666666779999999999999999999999998888888875

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=290.85  Aligned_cols=272  Identities=22%  Similarity=0.457  Sum_probs=221.2

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE-CCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEe
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k-dg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      .+|.+...|.++.+.+|+.++|.|.+.+.|. .|.|++ +|..+....+..+..++  ..|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            4788999999999999999999999999875 999999 77777766677666544  5689999999999999999999


Q ss_pred             CCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccc--cCceEEeeeceEEEee
Q psy11143        121 SEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIHRTGSLRLYN  197 (940)
Q Consensus       121 ~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~--~~~~~~~~~~sL~I~~  197 (940)
                      ..|.... ...|.|.  ..|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..++....++.|.|.+
T Consensus        82 ~~g~~~~~~~~l~v~--~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~  159 (291)
T 2wim_A           82 AKGQTQEATVVLEIY--QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN  159 (291)
T ss_dssp             SSSCEEEEEEEEEEE--CCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETT
T ss_pred             ccCceEEEEEEEEec--CCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEe
Confidence            9887643 4455554  456666667778899999999999999999999999999887754  3445555667899999


Q ss_pred             cccCCCceEEEEEEcCCcce--eeeeeeeecCCCCeeeeCCC--eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCC
Q psy11143        198 IGPQDSGLYRCTASNLLGED--VAEGYLTVTGAPPIFIQRPV--STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD  273 (940)
Q Consensus       198 v~~~DsG~YtC~a~N~~g~~--s~s~~L~V~~~~p~~~~~p~--~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~  273 (940)
                      ++.+|+|.|+|.+.|..+..  .....+.|. .+|.+...+.  ...+.+|+.+.|.|.+.|.|.|.+.|+++|..+...
T Consensus       160 v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~-~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  238 (291)
T 2wim_A          160 INKSDEGIYRCEGRVEARGEIDFRDIIVIVN-VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN  238 (291)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEEEEEEEEE-BCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT
T ss_pred             cchhhCEEEEEEEEECCCCeeEEeeEEEEec-cCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC
Confidence            99999999999999987543  344556665 4455544433  346778999999999999999999999999999888


Q ss_pred             CceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       274 ~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      .++.+...+..|.|.++..+|+|.|+|.|.|..|..+.++.+.|..
T Consensus       239 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          239 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             TTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             ccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence            8877776677799999999999999999999999999998888864

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=100.00  E-value=1.9e-35  Score=346.56  Aligned_cols=190  Identities=19%  Similarity=0.293  Sum_probs=162.0

Q ss_pred             cceeeeccchhhhhheeeEEEEeecccccccccccccccccCcccccccCCCCchhhccccCcCccCCCCccccHHHHHh
Q psy11143        484 ARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDK  563 (940)
Q Consensus       484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (940)
                      ..+|+.|  +|+|+++.  ..+...     .+.+.|.++||+|. ++.++|++++++||+.|+|++.+...++       
T Consensus       347 s~eF~~a--~~~Hslip--~~~~~~-----~~~~~l~~~ff~p~-~~~~~gid~llrgl~~q~a~~~~~~~n~-------  409 (587)
T 3nt1_A          347 ASEFNTL--YHWHPLLP--DTFNIE-----DQEYSFKQFLYNNS-ILLEHGLTQFVESFTRQIAGRVAGGRNV-------  409 (587)
T ss_dssp             BHHHHHH--TCCGGGSC--SSEEET-----TEEECHHHHTTCTH-HHHHHHHHHHHHHHHHSBCBCSSSSSCB-------
T ss_pred             HHHHHHH--HhccccCC--cccccC-----CCcccHHHHhcCcc-ccchhhHHHHHHHHHHhhhhcccccccC-------
Confidence            5677766  58999853  222211     23688999999994 5566789999999999999887433332       


Q ss_pred             hhccccchhhhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChhHHH
Q psy11143        564 LFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIE  643 (940)
Q Consensus       564 ~~~~~~~~~~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (940)
                           ...++||+|+|||||||||||+||+||++|||+++++|+||+.   |++++++|+++|++|+             
T Consensus       410 -----~~~~~DL~alnIqRGRDhGlp~YN~~R~~cgL~~~~tf~dl~~---~~~~~~~L~~lY~~~d-------------  468 (587)
T 3nt1_A          410 -----PIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG---EKEMAAELKALYSDID-------------  468 (587)
T ss_dssp             -----CGGGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS---SSHHHHHHHHHHSSGG-------------
T ss_pred             -----chHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhCC---CHHHHHHHHHHhCCHh-------------
Confidence                 2356999999999999999999999999999999999999985   7899999999999887             


Q ss_pred             HHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCCccc
Q psy11143        644 LIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFV  723 (940)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  723 (940)
                                                                                                +     
T Consensus       469 --------------------------------------------------------------------------d-----  469 (587)
T 3nt1_A          469 --------------------------------------------------------------------------V-----  469 (587)
T ss_dssp             --------------------------------------------------------------------------G-----
T ss_pred             --------------------------------------------------------------------------h-----
Confidence                                                                                      4     


Q ss_pred             ccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCccccceecc
Q psy11143        724 GAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILED  803 (940)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  803 (940)
                                                                                           ||||||||+|+
T Consensus       470 ---------------------------------------------------------------------IDL~vGglaE~  480 (587)
T 3nt1_A          470 ---------------------------------------------------------------------MELYPALLVEK  480 (587)
T ss_dssp             ---------------------------------------------------------------------CCHHHHHHHSC
T ss_pred             ---------------------------------------------------------------------eeeeccccccc
Confidence                                                                                 45999999999


Q ss_pred             ccCCCCCCcchhhhhhhh------hhhcccCCcccccCCCCCChhH-HhHhhhceeeeeeecCCCc
Q psy11143        804 QVDGGRVGPTMRCLLIDQ------FKRIRDGDRFWYENPSTFKPAQ-LTQIKQASLARVICDSGDR  862 (940)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  862 (940)
                      ++||+++||||.|| ..|      |+++|+|||||  ++++|+.+| +++|++++|++|||+|++.
T Consensus       481 ~~pG~~vGpTf~ci-~~qf~l~~~~~~~r~gDrfw--~~~~Ft~~qgl~~I~~~sL~~lic~N~~~  543 (587)
T 3nt1_A          481 PRPDAIFGETMVEL-GAPFSLKGLMGNPICSPQYW--KPSTFGGEVGFKIINTASIQSLICNNVKG  543 (587)
T ss_dssp             CSTTCSSCHHHHHH-HHHHHHHHHHTSGGGSTTTS--SGGGGTSHHHHHHHHTCCHHHHHHHHSTT
T ss_pred             CCCCccHHHHHHHH-HHHHHHHHHhcCcccCCccc--CcCccChHHHHHHHHHCCHHHHHHhCCCC
Confidence            99999999999999 666      59999999999  778999988 8999999999999999996

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=2.6e-31  Score=309.43  Aligned_cols=346  Identities=14%  Similarity=0.251  Sum_probs=231.6

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEe---e--------------cCCCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNS---L--------------DSDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~---I--------------~~~~~~~~~~~----gs~L~I~~  105 (940)
                      +|..+.+.+|++++|.|.+.+.+  .+.|.|||+  +..   +              ....++.+..+    ...|.|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            45567899999999999998876  678999984  221   1              01234444432    24689999


Q ss_pred             cccCCCeEEEEEEEeCCC------------ceEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CC-Ce
Q psy11143        106 VRESDAGVYNCVAQNSEG------------SAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PR  169 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g------------~~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~-p~  169 (940)
                      ++.+|+|.|+|.+.|..|            .....+.|.|...  .+|.+...+....+.+|+.++|.|.+.+. |. +.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  165 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  165 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence            999999999999998865            1223456666542  24555555545567899999999999986 64 79


Q ss_pred             EEEeeCCeeccccC-------ceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecC---------------
Q psy11143        170 ISWSKDEAEFVEDR-------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG---------------  227 (940)
Q Consensus       170 ItW~k~g~~i~~~~-------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~---------------  227 (940)
                      |+|++++..+....       .......+.|.|.++..+| |.|+|.|.|..+.......+.+..               
T Consensus       166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  244 (457)
T 1hzh_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPEL  244 (457)
T ss_dssp             EEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCC
T ss_pred             EEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccc
Confidence            99999886542110       0111223479999999999 999999999877655444444321               


Q ss_pred             -CCCee-eeCCCeeE-EecCCeEEEEEEEeeeCCC----eEEEEECCeecCCCCce-EE-eecCeEEEEee---eccCC-
Q psy11143        228 -APPIF-IQRPVSTT-YSTGSTSRITCLVEGHPLP----QMTWFHDGNSLDSDDHV-TY-EHDGFVLVLNG---VRESD-  294 (940)
Q Consensus       228 -~~p~~-~~~p~~~~-v~~G~~v~L~C~v~G~P~p----~ItW~k~g~~l~~~~~~-~~-~~~g~sL~I~~---v~~~D-  294 (940)
                       .+|.+ ...+.... +.+|+.++|.|.+.|.|++    .|+|+|++..+...... .. ..++. +.+..   +...| 
T Consensus       245 ~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~-~~~~~~l~i~~~d~  323 (457)
T 1hzh_H          245 LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNST-YRVVSVLTVLHQDW  323 (457)
T ss_dssp             SSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSC-EEEEEEECCCHHHH
T ss_pred             cCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCc-EEEEEEEEECHHHc
Confidence             13443 33333322 5679999999999998653    99999999888643221 11 12233 44443   23444 


Q ss_pred             --CeEEEEEEEeCCCCceeEEEEEE--eeccCCeEEEcCCc-eeecCCCeEEEEEeecCcCCC--eEEEEeCCeeeccCC
Q psy11143        295 --AGVYNCVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDR  367 (940)
Q Consensus       295 --sG~YtC~A~N~~Gs~~~s~~l~V--~~~~~P~i~~~p~~-~~v~~G~~vtL~C~v~g~P~p--~i~W~k~g~~i~~~~  367 (940)
                        +|.|+|.|.|..+.......+.+  ....+|.+...+.. ..+..|+ ++|.|.+.|.|+|  .|+|+|+|..+....
T Consensus       324 ~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  402 (457)
T 1hzh_H          324 LNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYK  402 (457)
T ss_dssp             HHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred             cCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECccee
Confidence              99999999988666544444433  34567877765543 2344555 9999999997544  999999998875322


Q ss_pred             c--EEEeee------ceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        368 N--HKIHRT------GSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       368 ~--~~i~~~------~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      .  .....+      +.|.|.....+|.|.|+|.|.|..-
T Consensus       403 ~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          403 TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence            1  111122      2456666666789999999999754

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.98  E-value=7.4e-32  Score=296.19  Aligned_cols=273  Identities=20%  Similarity=0.319  Sum_probs=218.4

Q ss_pred             CCeeEecCCceeecCCCcEEEEEEeCCC-CCCeEEEeeCCeeccccCceEEe-eeceEEEeecccCCCceEEEEEEcCCc
Q psy11143        138 APRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       138 ~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p~ItW~k~g~~i~~~~~~~~~-~~~sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      +|.+.. +.+..+.+|++++|.|.+.+. |.+.++|++++..+....++... ....|.|.+++.+|+|.|+|.+.|..|
T Consensus         7 ~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   85 (317)
T 2y25_A            7 GPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG   85 (317)
T ss_dssp             CCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSC
T ss_pred             CCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCC
Confidence            466664 446889999999999999887 78899999999988766555443 235899999999999999999999999


Q ss_pred             ceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEee----------eCCCeEEEEECCeecCCCCceEEeecCe--
Q psy11143        216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG----------HPLPQMTWFHDGNSLDSDDHVTYEHDGF--  283 (940)
Q Consensus       216 ~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G----------~P~p~ItW~k~g~~l~~~~~~~~~~~g~--  283 (940)
                      .....+.|.|.. +|.+...+....+..|+.+.|.|.+.+          .|.+.++|++++..+..+.++.+...+.  
T Consensus        86 ~~~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  164 (317)
T 2y25_A           86 KDKSRLKLVDEA-FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI  164 (317)
T ss_dssp             EEEEEECCSTHH-HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEE
T ss_pred             cEEEEEEEEEec-CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEE
Confidence            887777776652 222222233344556777777777766          6899999999999998877777655543  


Q ss_pred             EEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee------------------ccCCeEEEc-CCceeecCCCeEEEEE
Q psy11143        284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING------------------HRAPRLVVK-PFDMRAPAGSSVEIPC  344 (940)
Q Consensus       284 sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~------------------~~~P~i~~~-p~~~~v~~G~~vtL~C  344 (940)
                      .|.|.++..+|+|.|+|.|.|..|....+..+.|..                  ..+|.+... +....+.+|+.++|.|
T Consensus       165 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C  244 (317)
T 2y25_A          165 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC  244 (317)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEE
T ss_pred             EEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEE
Confidence            499999999999999999999999887777666431                  124555543 4557889999999999


Q ss_pred             eecCcCCCeEEEEeCCeeeccCCcEEEeee-c---eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        345 KPDGEPLPRISWSKDEAEFVEDRNHKIHRT-G---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       345 ~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~-~---sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      .+.|.|.|.|.|++++..+..+.++.+... +   +|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..|
T Consensus       245 ~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          245 NVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             EEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            999999999999999999988777777554 4   8999999999999999999999999999999999865

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.98  E-value=1e-31  Score=309.75  Aligned_cols=306  Identities=19%  Similarity=0.288  Sum_probs=217.5

Q ss_pred             ccEEEECCCCCCCCeEEEEEEEcCCceE-EEEEEEEEe---CCCeEEeCCCcEEEecCCeEEEEEEeec-cCCC-eEEEE
Q psy11143          7 STELVISGVQREHGGRYSCVAGNPAGVY-RGDLHVTVN---APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWF   80 (940)
Q Consensus         7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~-~~~v~l~V~---~pP~~~~~p~~~~V~eGesv~L~C~v~g-~P~p-~V~W~   80 (940)
                      ..+|+|.+++.+|+|.|+|.|.|..+.. .....|.|.   .+|.+...+....+.+|+.++|.|.+.+ .|.+ .|+|+
T Consensus        74 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~  153 (438)
T 1qgc_4           74 DFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK  153 (438)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEE
T ss_pred             cEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEE
Confidence            4689999999999999999999987632 233445554   3676666444433457889999999987 6777 99999


Q ss_pred             ECCEeecCCCCeEEE----ee-----ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeec
Q psy11143         81 HDGNSLDSDDHVTYE----HD-----GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP  151 (940)
Q Consensus        81 kdg~~I~~~~~~~~~----~~-----gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~  151 (940)
                      |+|..+.........    .+     ...|.|.++..+|+|.|+|.|.|..+......  .+.....+.....+....+.
T Consensus       154 k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~  231 (438)
T 1qgc_4          154 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK--SFNRNECEVMLVESGGGLVK  231 (438)
T ss_dssp             ETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEE--EEETTC-CCEEEEECCEEEC
T ss_pred             ECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceec--ccccccceeEEecCCceEEe
Confidence            999988654111111    11     23579999999999999999999988754333  33332333444556677899


Q ss_pred             CCCcEEEEEEeCCCC--CCeEEEeeC--Ceecc-----------------ccCceEEee-----eceEEEeecccCCCce
Q psy11143        152 AGSSVEIPCKPDGEP--LPRISWSKD--EAEFV-----------------EDRNHKIHR-----TGSLRLYNIGPQDSGL  205 (940)
Q Consensus       152 ~Ge~vtL~C~v~g~P--~p~ItW~k~--g~~i~-----------------~~~~~~~~~-----~~sL~I~~v~~~DsG~  205 (940)
                      +|++++|.|.+.|.|  .+.+.|+++  +..+.                 ...++.+..     ...|.|.+++.+|+|.
T Consensus       232 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~  311 (438)
T 1qgc_4          232 PGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAM  311 (438)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCE
T ss_pred             cCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEE
Confidence            999999999999988  679999996  44331                 123444433     2379999999999999


Q ss_pred             EEEEEEcCCc-----ceeeeeeeeecC---CCCeeeeCCCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc
Q psy11143        206 YRCTASNLLG-----EDVAEGYLTVTG---APPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH  275 (940)
Q Consensus       206 YtC~a~N~~g-----~~s~s~~L~V~~---~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~  275 (940)
                      |+|.|.|..+     .......+.|..   .+|.+...+....+.+|+.++|.|.+.|. |.| .|+|+++|..+.....
T Consensus       312 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~  391 (438)
T 1qgc_4          312 YYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF  391 (438)
T ss_dssp             EEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEEC
T ss_pred             EEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeec
Confidence            9999998544     222344566653   23444444434456789999999999997 888 9999999987753211


Q ss_pred             eEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEE
Q psy11143        276 VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI  315 (940)
Q Consensus       276 ~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l  315 (940)
                      ..+...+     +.|.|.++..+| |.|+|.|.|..|.......+
T Consensus       392 ~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          392 PAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             CCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            1111122     248999999888 99999999999987655443

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=99.98  E-value=1.2e-34  Score=340.39  Aligned_cols=191  Identities=20%  Similarity=0.300  Sum_probs=161.2

Q ss_pred             cceeeeccchhhhhheeeEEEEeecccccccccccccccccCcccccccCCCCchhhccccCcCccCCCCccccHHHHHh
Q psy11143        484 ARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDK  563 (940)
Q Consensus       484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (940)
                      ..||+.| +| +|+++.-  .+...     .+.+.|.++||+|.. +.+++++++++||+.|+|++.+...+.       
T Consensus       347 s~EF~~a-yR-~Hslip~--~~~~~-----~~~~~l~~~ff~~~~-~~~~g~~~ll~g~~~q~a~~~~~~~n~-------  409 (553)
T 1q4g_A          347 AMEFNQL-YH-WHPLMPD--SFRVG-----PQDYSYEQFLFNTSM-LVDYGVEALVDAFSRQPAGRIGGGRNI-------  409 (553)
T ss_dssp             BHHHHHH-TC-CGGGSCS--SEEET-----TEEECHHHHTTCSSH-HHHHCHHHHHHHHHHSBCBCSSSSSCB-------
T ss_pred             hHHHHHH-hc-ccccCCc--ccccC-----CCcccHHHHhcCchh-hhcccHHHHHHHhhhchhhcccccccC-------
Confidence            5678754 66 8998632  22211     235788999999954 556789999999999999886311111       


Q ss_pred             hhccccchhhhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChhHHH
Q psy11143        564 LFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIE  643 (940)
Q Consensus       564 ~~~~~~~~~~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (940)
                           ....+||+|+|||||||||||+||+||++|||+++++|+||+.   |++++++|+++|++|+             
T Consensus       410 -----~~~~~dL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~---d~~~~~~L~~lY~~~d-------------  468 (553)
T 1q4g_A          410 -----DHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG---EKEMAAELEELYGDID-------------  468 (553)
T ss_dssp             -----CTTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS---SSHHHHHHHHHHSSGG-------------
T ss_pred             -----cHHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhcC---CHHHHHHHHHHhcChh-------------
Confidence                 1346999999999999999999999999999999999999985   8999999999999887             


Q ss_pred             HHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCCccc
Q psy11143        644 LIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFV  723 (940)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  723 (940)
                                                                                                +     
T Consensus       469 --------------------------------------------------------------------------d-----  469 (553)
T 1q4g_A          469 --------------------------------------------------------------------------A-----  469 (553)
T ss_dssp             --------------------------------------------------------------------------G-----
T ss_pred             --------------------------------------------------------------------------h-----
Confidence                                                                                      4     


Q ss_pred             ccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCccccceecc
Q psy11143        724 GAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILED  803 (940)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  803 (940)
                                                                                           ||||||||+|+
T Consensus       470 ---------------------------------------------------------------------iDL~vG~laE~  480 (553)
T 1q4g_A          470 ---------------------------------------------------------------------LEFYPGLLLEK  480 (553)
T ss_dssp             ---------------------------------------------------------------------CCHHHHHHHSC
T ss_pred             ---------------------------------------------------------------------ccccccccccc
Confidence                                                                                 45999999999


Q ss_pred             ccCCCCCCcchhhhhhh-hhhhcc---cCCcccccCCCCCChhHHhHhhh-ceeeeeeecCCC
Q psy11143        804 QVDGGRVGPTMRCLLID-QFKRIR---DGDRFWYENPSTFKPAQLTQIKQ-ASLARVICDSGD  861 (940)
Q Consensus       804 ~~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  861 (940)
                      ++||+++||||.||+++ ||+|++   .|||||| +++.|+++|+.||++ ++|++|||+|++
T Consensus       481 ~~~G~~~Gpt~~~ii~~~~~~~l~~~~~~d~~~~-~~~~ft~~ql~ei~~~~sla~iic~n~~  542 (553)
T 1q4g_A          481 CHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYW-KASTFGGEVGFNLVKTATLKKLVCLNTK  542 (553)
T ss_dssp             BCTTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTC-SGGGGTSHHHHHHHHTCCHHHHHHTTSS
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHhhCcCCCcccc-CCCCcCHHHHHHHHHhCCHHHHHHHcCC
Confidence            99999999999999998 799997   5999888 789999999999976 699999999998

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.98  E-value=1.5e-31  Score=293.71  Aligned_cols=273  Identities=21%  Similarity=0.355  Sum_probs=216.6

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.|. .|.+..+.+|+.++|.|.+.+. |.+.|.|+|+|..+....+..+......|.|.+++.+|+|.|+|.+.|..
T Consensus         6 ~~P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   84 (317)
T 2y25_A            6 TGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR   84 (317)
T ss_dssp             SCCEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSS
T ss_pred             CCCcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCC
Confidence            467776 4456899999999999999887 77899999999999877666666556778999999999999999999998


Q ss_pred             CceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCC----------CCCCeEEEeeCCeeccccCceEEeeec-
Q psy11143        123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG----------EPLPRISWSKDEAEFVEDRNHKIHRTG-  191 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g----------~P~p~ItW~k~g~~i~~~~~~~~~~~~-  191 (940)
                      |.......|.|.  ..|.+...+....+.+|+.+.|.|.+.+          .|.+.++|++++..+....+......+ 
T Consensus        85 g~~~~~~~l~v~--~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  162 (317)
T 2y25_A           85 GKDKSRLKLVDE--AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE  162 (317)
T ss_dssp             CEEEEEECCSTH--HHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSS
T ss_pred             CcEEEEEEEEEe--cCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCC
Confidence            876555444433  2333333344556678888888888776          789999999999988776665554332 


Q ss_pred             --eEEEeecccCCCceEEEEEEcCCcceeeeeeeeecC-------------------CCCeeee-CCCeeEEecCCeEEE
Q psy11143        192 --SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG-------------------APPIFIQ-RPVSTTYSTGSTSRI  249 (940)
Q Consensus       192 --sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~-------------------~~p~~~~-~p~~~~v~~G~~v~L  249 (940)
                        .|.|.+++.+|+|.|+|.|.|..|.......+.+..                   .+|.+.. .+....+..|+.+.|
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l  242 (317)
T 2y25_A          163 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL  242 (317)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCE
T ss_pred             EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEE
Confidence              499999999999999999999998888777776531                   1233333 456678999999999


Q ss_pred             EEEEeeeCCCeEEEEECCeecCCCCceEEeec-C--eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD-G--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       250 ~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~-g--~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      .|.+.|.|.|.+.|+++|..+....++.+... +  ..|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       243 ~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          243 TCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            99999999999999999999988877777654 3  3699999999999999999999999998888888753

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.98  E-value=9.5e-32  Score=303.05  Aligned_cols=267  Identities=17%  Similarity=0.198  Sum_probs=210.4

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEe
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS   85 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~   85 (940)
                      +..+|+|.+++.+|+|.|+|.+.|..+    .+.|.|..   +...|. ..+.+|+.++|.|.+.+.|.+.|.|++++..
T Consensus        65 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~----~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~  136 (363)
T 1wio_A           65 GNFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGK  136 (363)
T ss_dssp             TCCCEEECSCCGGGCEEEEEEETTEEE----EEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSC
T ss_pred             CeEEEEECCCCHHHCEEEEEEEEECCC----cEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCc
Confidence            466899999999999999999998643    45555553   233333 4678999999999999999999999999865


Q ss_pred             ecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCC-
Q psy11143         86 LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-  164 (940)
Q Consensus        86 I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-  164 (940)
                      +        ......|.|.+++.+|+|.|+|.|.|..+.....+.+.|...+.  .   +....+.+|+.+.|.|.+.+ 
T Consensus       137 ~--------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~--~---~~~~~~~~G~~v~l~C~~~~~  203 (363)
T 1wio_A          137 N--------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK--A---SSIVYKKEGEQVEFSFPLAFT  203 (363)
T ss_dssp             E--------EEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC--S---EEEEEEETBCCEEEECCCCCC
T ss_pred             c--------cccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC--C---CCceEEecCCEEEEEEEEecc
Confidence            4        23445679999999999999999999866655555666653222  1   14567889999999998887 


Q ss_pred             ----CCCCeEEEeeCCeeccc--------cCceEEee-------------eceEEEeecccCCCceEEEEEEcC--Ccce
Q psy11143        165 ----EPLPRISWSKDEAEFVE--------DRNHKIHR-------------TGSLRLYNIGPQDSGLYRCTASNL--LGED  217 (940)
Q Consensus       165 ----~P~p~ItW~k~g~~i~~--------~~~~~~~~-------------~~sL~I~~v~~~DsG~YtC~a~N~--~g~~  217 (940)
                          .|.+.++|+++|..+..        ...+.+..             ...|.|.+++.+|+|.|+|.|.|.  .|..
T Consensus       204 ~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~  283 (363)
T 1wio_A          204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL  283 (363)
T ss_dssp             CCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCE
T ss_pred             cccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeE
Confidence                78889999999987765        34443322             338999999999999999999999  8988


Q ss_pred             eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCe--EEEEECCeecCCCCceEEeecCeEEEEeeeccCCC
Q psy11143        218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ--MTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA  295 (940)
Q Consensus       218 s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~--ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~Ds  295 (940)
                      +..+.|.|..              ..|+.+.|.|.+.|.|.|.  ++|++++..+..+         ..|.|.++..+|+
T Consensus       284 ~~~~~l~V~~--------------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~---------~~l~i~~v~~~d~  340 (363)
T 1wio_A          284 HQEVNLVVMR--------------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS---------KREKAVWVLNPEA  340 (363)
T ss_dssp             EEEEEEEEEE--------------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSEE---------ESSSEEEESSCCS
T ss_pred             EEEEeEEEEE--------------ecCCCeeEEEEEccccCCCccEEEEeCCCceeee---------eeeeeeeeccccc
Confidence            8888887761              1288999999999999988  9999999877632         2278899999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEE
Q psy11143        296 GVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       296 G~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      |.|+|.|.|. |....+..+.|
T Consensus       341 G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          341 GMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             EEEEEEECSS-SSCCEEEEEEE
T ss_pred             eeEEEEEecC-CeEEEecceEe
Confidence            9999999965 55555666665

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=8.6e-30  Score=298.32  Aligned_cols=349  Identities=16%  Similarity=0.266  Sum_probs=233.1

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Ee---ec--------------CCCCeEEEee----ceEEEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---LD--------------SDDHVTYEHD----GFVLVL  103 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~---I~--------------~~~~~~~~~~----gs~L~I  103 (940)
                      +.+|..+.+.+|++++|.|.+.+.+  .+.|.|||+.  ..   +.              ...++.+..+    ...|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (475)
T 1iga_A            5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL   84 (475)
T ss_pred             eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence            4557788999999999999998764  5689999853  21   10              0123333321    246899


Q ss_pred             cccccCCCeEEEEEEEeCCCc------eEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CC-C-eEEE
Q psy11143        104 NGVRESDAGVYNCVAQNSEGS------AESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-P-RISW  172 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g~------~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~-p-~ItW  172 (940)
                      .+++.+|+|.|+|.+.+..|.      ....+.|.|...  ..|.+...+. ..+.+|+.++|.|.+.|. |. + .|+|
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~W  163 (475)
T 1iga_A           85 SSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSVTW  163 (475)
T ss_pred             CCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEEEE
Confidence            999999999999999998652      122456666532  2344444332 233789999999999986 65 5 9999


Q ss_pred             eeCCeecccc--------CceEEeeeceEEEeecccCCCceEEEEEEcCCcce-eeeeeeeecC----------------
Q psy11143        173 SKDEAEFVED--------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVTG----------------  227 (940)
Q Consensus       173 ~k~g~~i~~~--------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~----------------  227 (940)
                      ++++......        ........+.|.|..+..+|+|.|+|.|.|..+.. ...+.+.|..                
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~  243 (475)
T 1iga_A          164 SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPS  243 (475)
T ss_pred             cCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCC
Confidence            9987532110        00112223468888888899999999999987642 2222322210                


Q ss_pred             -CCCee-eeCCCeeEEecCCeEEEEEEEeeeCC---CeEEEEECCeecCCCCc--eEEee-----cCeEEEEeeeccCCC
Q psy11143        228 -APPIF-IQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNSLDSDDH--VTYEH-----DGFVLVLNGVRESDA  295 (940)
Q Consensus       228 -~~p~~-~~~p~~~~v~~G~~v~L~C~v~G~P~---p~ItW~k~g~~l~~~~~--~~~~~-----~g~sL~I~~v~~~Ds  295 (940)
                       .+|.+ ...+....+.+|+.++|.|.+.|.++   +.|+|  ++..+.....  .....     ....|.|.++..+|+
T Consensus       244 ~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~  321 (475)
T 1iga_A          244 CCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG  321 (475)
T ss_pred             CCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccC
Confidence             13333 33333334689999999999998754   69999  4444432111  01110     123499999999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEE-eeccCCeEEEcCCc-eeecCCCeEEEEEeecCcCC--CeEEEEeCCeeeccCCcE--
Q psy11143        296 GVYNCVAQNSEGSAESVAMIRI-NGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRNH--  369 (940)
Q Consensus       296 G~YtC~A~N~~Gs~~~s~~l~V-~~~~~P~i~~~p~~-~~v~~G~~vtL~C~v~g~P~--p~i~W~k~g~~i~~~~~~--  369 (940)
                      |.|+|.|.|..+.......+.+ ....+|.+.+.+.. ..+..|+.++|.|.+.|.++  +.|.|+|+|..+......  
T Consensus       322 G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  401 (475)
T 1iga_A          322 KTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTW  401 (475)
T ss_pred             CcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeec
Confidence            9999999999988755555543 22467777665543 34678999999999998643  499999999887644211  


Q ss_pred             --EE---------eeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        370 --KI---------HRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       370 --~i---------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                        ..         ...+.|.|.....+|.|.|+|.|.|....
T Consensus       402 ~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          402 ASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             ccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence              11         12235777777778899999999997654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=6.8e-33  Score=320.57  Aligned_cols=349  Identities=15%  Similarity=0.238  Sum_probs=237.1

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Eee----c-------------CCCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL----D-------------SDDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~I----~-------------~~~~~~~~~~----gs~L~I~  104 (940)
                      .++..+.+.+|++++|.|.+.+.+  .+.|.|+|++  ..+    .             ...++.+..+    ...|.|.
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS   83 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred             ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence            345677899999999999998764  6789999863  221    0             0123333322    2358999


Q ss_pred             ccccCCCeEEEEEEEeCCCceEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCCeecc
Q psy11143        105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFV  180 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g~~i~  180 (940)
                      +++.+|+|.|+|.+.|..+.....+.|.|...  .+|.+...+....+.+|+.++|.|.+.|. |.+ .|+|++++..+.
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~  163 (434)
T 1igy_B           84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  163 (434)
T ss_dssp             SBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred             CCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence            99999999999999986444334556777532  23555443434456899999999999985 776 999999886531


Q ss_pred             cc------CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecC------------CCCeeeeCCCeeE-E
Q psy11143        181 ED------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG------------APPIFIQRPVSTT-Y  241 (940)
Q Consensus       181 ~~------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~------------~~p~~~~~p~~~~-v  241 (940)
                      ..      ........+.|.|.++..+| |.|+|.|.|..+.......+.+..            .+..+...+.... +
T Consensus       164 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v  242 (434)
T 1igy_B          164 VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTL  242 (434)
T ss_dssp             EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHH
T ss_pred             eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhc
Confidence            10      00112233569999999888 999999999988755444443320            1222233333222 7


Q ss_pred             ecCCeEEEEEEEeeeC----CCeEEEEECCeecCCCCceEE--eec-----CeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        242 STGSTSRITCLVEGHP----LPQMTWFHDGNSLDSDDHVTY--EHD-----GFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~P----~p~ItW~k~g~~l~~~~~~~~--~~~-----g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      .+|+.++|.|.+.|.+    .+.|+|+|++..+........  ..+     ...|.|.++..+|+|.|+|.|.|..|...
T Consensus       243 ~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~  322 (434)
T 1igy_B          243 LITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAP  322 (434)
T ss_dssp             STTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSC
T ss_pred             ccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCc
Confidence            8899999999999984    358999999987753321110  011     12499999999999999999999988764


Q ss_pred             eEEEEEE--eeccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeeccCCcEE--------EeeeceEE
Q psy11143        311 SVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDRNHK--------IHRTGSLR  378 (940)
Q Consensus       311 ~s~~l~V--~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~~~~~--------i~~~~sL~  378 (940)
                      ....+.+  ....+|.+...+.......|+.++|.|.+.|. |.+ .|+|+|+|..+.......        ....+.|.
T Consensus       323 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~  402 (434)
T 1igy_B          323 IEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLN  402 (434)
T ss_dssp             CCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEE
T ss_pred             eeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEE
Confidence            3333332  44567877766554434567789999999985 433 999999998774321111        11223567


Q ss_pred             EecCCCCCCeEEEEEEEeCCe
Q psy11143        379 LYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       379 I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      |.....+|.|.|+|.|.|...
T Consensus       403 i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          403 VQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             EEHHHHHTTCCEEEEEEETTS
T ss_pred             ECchhccCCCEEEEEEEcCCC
Confidence            777777889999999999754

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=4.2e-30  Score=279.61  Aligned_cols=263  Identities=17%  Similarity=0.265  Sum_probs=209.4

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcc
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                      .+|.+...+....+.+|++++|.|.+.+    .++|++++..+    ......++.|.|.+++.+|+|.|+|.+.|  |.
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~   80 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL   80 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS----CEEEECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce----eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence            4577777778889999999999999988    89999998876    12222347899999999999999999999  44


Q ss_pred             eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCC-CeEEEE-ECCeecCCCCceEEeecCeEEEEeeeccCC
Q psy11143        217 DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWF-HDGNSLDSDDHVTYEHDGFVLVLNGVRESD  294 (940)
Q Consensus       217 ~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~-p~ItW~-k~g~~l~~~~~~~~~~~g~sL~I~~v~~~D  294 (940)
                       +..+.|.|.. +|.....+....+.+|+.+.|.|.+.+ |. +.++|+ ++|..+....++.....+ .|.|.++..+|
T Consensus        81 -~~~~~l~V~~-~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~-~L~i~~v~~~d  156 (290)
T 2o26_X           81 -TSSIYVFVRD-PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKA-GITIKNVKRAY  156 (290)
T ss_dssp             -EEEEEEEEEC-SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTT-EEEEESCCGGG
T ss_pred             -cEEEEEEEeC-CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCC-CEEEecccHHH
Confidence             6677888874 333336667788889999999999996 77 899995 688888776666665555 49999999999


Q ss_pred             Ce-EEEEEEEeCCCCcee-EEEEEEe--eccCCeEEEcCCceeecCCCeEEEEEeecCcCCCe-EEEEeCCeee----cc
Q psy11143        295 AG-VYNCVAQNSEGSAES-VAMIRIN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR-ISWSKDEAEF----VE  365 (940)
Q Consensus       295 sG-~YtC~A~N~~Gs~~~-s~~l~V~--~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~-i~W~k~g~~i----~~  365 (940)
                      +| .|+|.|.|..+.... .+.+.|.  ...+|.+...+....+.+|++++|.|.+.|.|.|. |.|++++..+    ..
T Consensus       157 ~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~  236 (290)
T 2o26_X          157 HRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQV  236 (290)
T ss_dssp             TTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCE
T ss_pred             CCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceee
Confidence            99 999999998554332 4566665  34788888888888899999999999999999996 9999998763    22


Q ss_pred             CCcE------EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        366 DRNH------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       366 ~~~~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      ....      .....++|.|.++..+|+|.|+|.|.|..|..+..+.|.|.++|
T Consensus       237 ~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             ECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             cccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            2211      22345689999999999999999999999999999999987653

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=278.21  Aligned_cols=265  Identities=16%  Similarity=0.292  Sum_probs=206.2

Q ss_pred             CCcEEEecCCeEEEEEEee-ccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESV  128 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~  128 (940)
                      +..+.|.+|+.+.|.|... +.|.+.|.|+|++..+....+..+...+  ..|.|.+++.+|+|.|+|.+.|..|... +
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s   86 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-S   86 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-E
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-E
Confidence            3457788999999999885 5788999999999999877787777655  6789999999999999999999888554 4


Q ss_pred             EEEEEeccc----------CCeeEecCC-ceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEEeeec-----
Q psy11143        129 AMIRINGHR----------APRLVVKPF-DMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTG-----  191 (940)
Q Consensus       129 ~~L~V~~~~----------~P~~~~~p~-~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~~~~~-----  191 (940)
                      ..+.|....          .|.+...+. ...+.+|+.+.|.|.+. +.|.+.++|++++..+....++.+....     
T Consensus        87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~  166 (312)
T 2y23_A           87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII  166 (312)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEE
T ss_pred             EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEE
Confidence            445543210          344444333 77899999999999999 8999999999999998877666555433     


Q ss_pred             eEEEeecccCCCceEEEEEEcCCcceeeeeeee------------------ecCCCCeeeeCCCeeEEecCCeEEEEEEE
Q psy11143        192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT------------------VTGAPPIFIQRPVSTTYSTGSTSRITCLV  253 (940)
Q Consensus       192 sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~------------------V~~~~p~~~~~p~~~~v~~G~~v~L~C~v  253 (940)
                      .|.|.+++.+|+|.|+|.+.+..........+.                  +...+|.+... ....+.+|+.+.|.|.+
T Consensus       167 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~v~~G~~~~l~C~~  245 (312)
T 2y23_A          167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-LSWEVTGECNVLLKCKV  245 (312)
T ss_dssp             EEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE-EEEEEETTTEEEEEEEE
T ss_pred             EEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeec-ceEEEeCCCEEEEEEEE
Confidence            399999999999999999987554443333321                  00123444432 23678899999999999


Q ss_pred             eeeCCC-eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        254 EGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       254 ~G~P~p-~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .|.|.| .++|++++..+..+.++.+......|.|.++..+|+|.|+|.|.|..|....++.|.++
T Consensus       246 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          246 ANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             ESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             cCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            999998 99999999999866666655444569999999999999999999999999888877654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=276.69  Aligned_cols=261  Identities=16%  Similarity=0.273  Sum_probs=206.0

Q ss_pred             CceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEEeeec---eEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143        146 FDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEG  221 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~~~~~---sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~  221 (940)
                      ..+.+.+|+.+.|.|... +.|.+.++|++++..+....++.+...+   .|.|.+++.+|+|.|+|.+.|..|... +.
T Consensus         9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~   87 (312)
T 2y23_A            9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SY   87 (312)
T ss_dssp             CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EE
T ss_pred             eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EE
Confidence            356788999999999886 5789999999999999877777665543   799999999999999999999888544 45


Q ss_pred             eeeecC-----------CCCeeeeCC-CeeEEecCCeEEEEEEEe-eeCCCeEEEEECCeecCCCCceEEeec----CeE
Q psy11143        222 YLTVTG-----------APPIFIQRP-VSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHD----GFV  284 (940)
Q Consensus       222 ~L~V~~-----------~~p~~~~~p-~~~~v~~G~~v~L~C~v~-G~P~p~ItW~k~g~~l~~~~~~~~~~~----g~s  284 (940)
                      .+.|..           .+|.+...+ ....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..+    ..+
T Consensus        88 ~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~  167 (312)
T 2y23_A           88 LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE  167 (312)
T ss_dssp             EECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEE
T ss_pred             EEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEE
Confidence            555542           044444333 377889999999999999 899999999999999988776665543    234


Q ss_pred             EEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe-------------------eccCCeEEEcCCceeecCCCeEEEEEe
Q psy11143        285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN-------------------GHRAPRLVVKPFDMRAPAGSSVEIPCK  345 (940)
Q Consensus       285 L~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~-------------------~~~~P~i~~~p~~~~v~~G~~vtL~C~  345 (940)
                      |.|.++..+|+|.|+|.|.|..+....  .+.+.                   ...+|.+.... ...+.+|++++|.|.
T Consensus       168 L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~  244 (312)
T 2y23_A          168 MFMEKLQDEDEGTYTFQLQDGKATNHS--TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCK  244 (312)
T ss_dssp             EEESCCCGGGCEEEEEEEESSSCEEEE--EEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEE
T ss_pred             EEEccCCcccCEeEEEEEEeCCceEEE--EEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEEEE
Confidence            999999999999999999875544433  33331                   12346666433 367889999999999


Q ss_pred             ecCcCCC-eEEEEeCCeeeccCCcEEEee-eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        346 PDGEPLP-RISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       346 v~g~P~p-~i~W~k~g~~i~~~~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      +.|.|.| .|.|+|++..+..+.++.+.. .++|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus       245 ~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          245 VANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             EESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             EcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            9999998 999999999987665555543 3689999999999999999999999999999988765

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.97  E-value=3.1e-29  Score=276.32  Aligned_cols=269  Identities=18%  Similarity=0.315  Sum_probs=208.4

Q ss_pred             eEecCCceeecCCCcEEEEEEeCCCCCC-----eEEEeeCCeecc-------------ccCceEEe--------eeceEE
Q psy11143        141 LVVKPFDMRAPAGSSVEIPCKPDGEPLP-----RISWSKDEAEFV-------------EDRNHKIH--------RTGSLR  194 (940)
Q Consensus       141 ~~~~p~~~~v~~Ge~vtL~C~v~g~P~p-----~ItW~k~g~~i~-------------~~~~~~~~--------~~~sL~  194 (940)
                      ++..|.++.+..|++++|.|.+.+.+.+     .|+|+|++....             ...+....        .+.+|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            3456677888999999999999876655     499999775321             11222221        235799


Q ss_pred             EeecccCCCceEEEEEEc-CCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEe-eeCCCeEEEEECCeecCC
Q psy11143        195 LYNIGPQDSGLYRCTASN-LLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDS  272 (940)
Q Consensus       195 I~~v~~~DsG~YtC~a~N-~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~-G~P~p~ItW~k~g~~l~~  272 (940)
                      |.+++.+|+|.|+|.+.+ ..+..+..+.|.+. .+|.....+....+..|+.+.+.|.+. +.|.+.+.|++++..+..
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~-~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~  161 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL-AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN  161 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCB-BCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeec-cCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence            999999999999998864 45666777777777 455555555566677889999999875 789999999999887754


Q ss_pred             CCceEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCC-ceeecCCCeEEEEEee
Q psy11143        273 DDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCKP  346 (940)
Q Consensus       273 ~~~~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~-~~~v~~G~~vtL~C~v  346 (940)
                      ........++     +.|.|.....+|+|.|+|.|.|..+.......+.+.+..+|.+...+. ...+..|+.++|.|.+
T Consensus       162 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~  241 (313)
T 4fqp_A          162 TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA  241 (313)
T ss_dssp             EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE
T ss_pred             cceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEe
Confidence            3332222222     248888999999999999999998887777777776667888765543 4456778999999999


Q ss_pred             cCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        347 DGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       347 ~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      .|+|.| .|+|+|++..+...   ....+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+.+|
T Consensus       242 ~g~P~p~~v~W~~~~~~l~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  306 (313)
T 4fqp_A          242 RSNPEPTGYNWSTTMGPLPPF---AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP  306 (313)
T ss_dssp             EEESCCCEEEEEETTBSCCTT---EEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             cCCCCCcEEEEEECCEECCCc---eEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence            999999 69999999887644   23456789999999999999999999999999999999998764

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.2e-29  Score=273.92  Aligned_cols=261  Identities=17%  Similarity=0.227  Sum_probs=207.2

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      ..+|.+...+....+.+|++++|.|.+.+    .|.|+|++..+     ......+..|.|.+++.+|+|.|+|.+.|  
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--   78 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN-----EMVENKKNEWIQEKAEATRTGTYTCSNSN--   78 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS-----CEEEECSSEEEETTCCGGGCEEEEEEESS--
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce-----eeecCCCceEEEeccCHHhCeEEEEEeeC--
Confidence            45788888888999999999999999987    89999999876     12234457789999999999999999998  


Q ss_pred             CceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCC-CeEEEe-eCCeeccccCceEEeeeceEEEeeccc
Q psy11143        123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWS-KDEAEFVEDRNHKIHRTGSLRLYNIGP  200 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~-p~ItW~-k~g~~i~~~~~~~~~~~~sL~I~~v~~  200 (940)
                      |. ...+.|.|...+.+  ...+....+.+|+.+.|.|.+.+ |. +.++|+ +++..+....++.....+.|.|.+++.
T Consensus        79 g~-~~~~~l~V~~~~~~--~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~  154 (290)
T 2o26_X           79 GL-TSSIYVFVRDPAKL--FLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKR  154 (290)
T ss_dssp             SC-EEEEEEEEECSSCC--BCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCG
T ss_pred             Cc-cEEEEEEEeCCCcc--cccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccH
Confidence            43 55677777654333  35666788889999999999996 77 899995 688888766666666667899999999


Q ss_pred             CCCc-eEEEEEEcCCcce-eeeeeeeecC---CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCe-EEEEECCeec----
Q psy11143        201 QDSG-LYRCTASNLLGED-VAEGYLTVTG---APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTWFHDGNSL----  270 (940)
Q Consensus       201 ~DsG-~YtC~a~N~~g~~-s~s~~L~V~~---~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k~g~~l----  270 (940)
                      +|+| .|+|.|.|..+.. +..+.|.|..   .+|.+...+....+.+|+.++|.|.+.|.|.|. ++|++++..+    
T Consensus       155 ~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~  234 (290)
T 2o26_X          155 AYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA  234 (290)
T ss_dssp             GGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECC
T ss_pred             HHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccce
Confidence            9999 9999999986553 3356676652   567777777778899999999999999999996 9999998873    


Q ss_pred             CCCCceEEe-----ecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        271 DSDDHVTYE-----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       271 ~~~~~~~~~-----~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .........     .....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  287 (290)
T 2o26_X          235 QVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV  287 (290)
T ss_dssp             CEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             eecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence            322222111     223459999999999999999999999999777776664

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=2.5e-29  Score=272.48  Aligned_cols=270  Identities=18%  Similarity=0.289  Sum_probs=211.6

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcc
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                      ++|.+...+....+.+|++++|.|.+.+    .++|++++......  ........|.|.+++.+|+|.|+|.+.|..+.
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   76 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTL--DPESPGSTLTTRNATFKNTGTYRCTELEDPMA   76 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEE--CCCSSCCEEEESSCCGGGCEEEEEECCC----
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEEE--eccCCccEEEEeeeccccCEEEEEEEeccCCc
Confidence            4566777777889999999999999987    49999876432110  01123457999999999999999999998888


Q ss_pred             eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCe-EEEEE-CCeecCCCCceEEeecCeEEEEeeeccCC
Q psy11143        217 DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESD  294 (940)
Q Consensus       217 ~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k-~g~~l~~~~~~~~~~~g~sL~I~~v~~~D  294 (940)
                      .+..+.|.|...+..+...+....+.+|+.+.|.|.+.+.+.+. ++|++ ++..+....++.+..++. |.|.++..+|
T Consensus        77 ~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-L~i~~v~~~d  155 (289)
T 3ejj_X           77 GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG-FIIRKAKVLD  155 (289)
T ss_dssp             -CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTE-EEESSCCGGG
T ss_pred             ceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCC-EEEeeccccc
Confidence            88888899886554467777888999999999999999977765 99986 677777776776665555 9999999999


Q ss_pred             CeEEEEEEE-eCCCCceeEEEEEEeec--cCCeEEEcCCceeecCCCeEEEEEeecC-cCCCeEEEEeCCeeeccCCcEE
Q psy11143        295 AGVYNCVAQ-NSEGSAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHK  370 (940)
Q Consensus       295 sG~YtC~A~-N~~Gs~~~s~~l~V~~~--~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~  370 (940)
                      +|.|+|.|. +..+..+..+.|.|...  .+|.+...+....+.+|++++|.|.+.+ .|.|.|.|++++..+.......
T Consensus       156 ~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~  235 (289)
T 3ejj_X          156 SNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD  235 (289)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEE
T ss_pred             CEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcc
Confidence            999999999 44455555666766532  5788888888888889999999999998 7999999999998875432221


Q ss_pred             -----EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        371 -----IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       371 -----i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                           ....++|.|.+++.+|+|.|+|.|.|..|..++++.|.+..++
T Consensus       236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             ECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             cccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence                 2235689999999999999999999999999999999887653

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=2e-29  Score=280.41  Aligned_cols=258  Identities=17%  Similarity=0.256  Sum_probs=201.7

Q ss_pred             CceeecCCCcEEEEEEeCCC---------CCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCc-eEEEEEEcCCc
Q psy11143        146 FDMRAPAGSSVEIPCKPDGE---------PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSG-LYRCTASNLLG  215 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~---------P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG-~YtC~a~N~~g  215 (940)
                      ..+.+.+|+++.|.|.+.+.         |.+.++|++++..+....+.  ...++|.|.+++.+|+| .|+|.|.|..|
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g  114 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTKNG  114 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence            45678999999999998874         56799999998877654443  45778999999999999 99999999887


Q ss_pred             ceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeC-CCeEEEEECCeecCCC-CceEEeecCeEEEEeeeccC
Q psy11143        216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRES  293 (940)
Q Consensus       216 ~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P-~p~ItW~k~g~~l~~~-~~~~~~~~g~sL~I~~v~~~  293 (940)
                      .......+.+...+|.+...+....+.+|+.+.|.|.+.|.| .|.++|+|++..+... .++...  +..|.|.++..+
T Consensus       115 ~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~--~~~L~I~~v~~~  192 (329)
T 3oq3_B          115 DCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS--GQNLIIHNPELE  192 (329)
T ss_dssp             CEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE--TTEEEECSCCGG
T ss_pred             ceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC--CCEEEEeecChh
Confidence            654444334544555544444344566799999999999999 8999999999998633 333332  456999999999


Q ss_pred             CCeEEEEEEEeC--CCCceeE----EEEEEeeccCC----eEEEcCCceeecCCCeEEEEEeecCcC---CC-eEEEEeC
Q psy11143        294 DAGVYNCVAQNS--EGSAESV----AMIRINGHRAP----RLVVKPFDMRAPAGSSVEIPCKPDGEP---LP-RISWSKD  359 (940)
Q Consensus       294 DsG~YtC~A~N~--~Gs~~~s----~~l~V~~~~~P----~i~~~p~~~~v~~G~~vtL~C~v~g~P---~p-~i~W~k~  359 (940)
                      |+|.|+|.|.|.  .|.....    +.|.|.  .+|    .+. .|....+.+|++++|.|.+.|.|   .| .+.|+++
T Consensus       193 D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~--~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~  269 (329)
T 3oq3_B          193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVI--PSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP  269 (329)
T ss_dssp             GCEEEEEEEEECCTTSSSCEEEEEEEEEEEE--CCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECT
T ss_pred             hCEEEEEEEEecccCCCceeEEEeeEEEEEE--CCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEEC
Confidence            999999999997  6655444    445554  333    333 67778899999999999999998   77 8999999


Q ss_pred             Ceee-ccCCcEEEe-------eeceEEEecCCCCCCe-EEEEEEEeCCeeEEEEEEEEEe
Q psy11143        360 EAEF-VEDRNHKIH-------RTGSLRLYNIGPQDSG-LYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       360 g~~i-~~~~~~~i~-------~~~sL~I~~v~~~D~G-~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      +..+ ..+.+....       ..++|.|.+++.+|+| .|+|.|.|..|....++.|.|+
T Consensus       270 g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~  329 (329)
T 3oq3_B          270 SGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE  329 (329)
T ss_dssp             TSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence            9874 333332222       3568999999999999 9999999999999999988874

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=4.7e-30  Score=282.42  Aligned_cols=264  Identities=19%  Similarity=0.230  Sum_probs=207.5

Q ss_pred             CceeecCCCcEEEEEEeCCCC-CCeEEEeeCCeecc----ccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeee
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFV----EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  220 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P-~p~ItW~k~g~~i~----~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s  220 (940)
                      ....+.+|+++.|.|.+.+.| .+.++|++++..+.    ...+.. ..++.|.|.+++.+|+|.|+|.+.|..|.....
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIH-QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   91 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSE-ECSSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEe-ccCCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence            356788999999999999887 78999999886432    122333 335689999999999999999999998887777


Q ss_pred             eeeeecCCCCeeeeCC---CeeEEecCCeEEEEEEE------eeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeec
Q psy11143        221 GYLTVTGAPPIFIQRP---VSTTYSTGSTSRITCLV------EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR  291 (940)
Q Consensus       221 ~~L~V~~~~p~~~~~p---~~~~v~~G~~v~L~C~v------~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~  291 (940)
                      ..+.+...+|.+...+   ....+..|+++.|.|.+      .|.|.+.++|++++..+....... ...+..|.|.++.
T Consensus        92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~-~~~~~~L~i~~v~  170 (315)
T 1itb_B           92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SGVKDRLIVMNVA  170 (315)
T ss_dssp             CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSE-EEETTEEEESSCC
T ss_pred             EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceE-eecCceEEEEece
Confidence            7777665566554332   23568899999999998      889999999999999987543332 3334469999999


Q ss_pred             cCCCeEEEEEEE-eCCCCcee---EEEEEEee---ccCCeEEEcCCc-eeecCCCeEEEEEeecCcCCCeEEEEeCCeee
Q psy11143        292 ESDAGVYNCVAQ-NSEGSAES---VAMIRING---HRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF  363 (940)
Q Consensus       292 ~~DsG~YtC~A~-N~~Gs~~~---s~~l~V~~---~~~P~i~~~p~~-~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i  363 (940)
                      .+|+|.|+|.|. |..|....   ...+.+..   ..+|.+...+.. ..+.+|++++|.|.+.|.|.|.|.|+++|..+
T Consensus       171 ~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i  250 (315)
T 1itb_B          171 EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI  250 (315)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEEC
T ss_pred             ehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEEC
Confidence            999999999999 78887632   33333321   357777665553 57899999999999999999999999999988


Q ss_pred             ccCCcEEE---------------eeeceEEEecCCCCC-CeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        364 VEDRNHKI---------------HRTGSLRLYNIGPQD-SGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       364 ~~~~~~~i---------------~~~~sL~I~~v~~~D-~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      ........               ...+.|.|.++..+| +|.|+|.|.|..|....++.|.|+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             CTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             CcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            76542211               123489999999999 9999999999999999999998764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=5.6e-29  Score=269.79  Aligned_cols=267  Identities=16%  Similarity=0.253  Sum_probs=211.9

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      .+|.+...+....+.+|+.++|.|.+.+    .|.|++++....   .......+..|.|.+++.+|+|.|+|.+.|..+
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   75 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW---TLDPESPGSTLTTRNATFKNTGTYRCTELEDPM   75 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS---EECCCSSCCEEEESSCCGGGCEEEEEECCC---
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE---EEeccCCccEEEEeeeccccCEEEEEEEeccCC
Confidence            4677777888899999999999999987    499998764321   112224456789999999999999999999888


Q ss_pred             ceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCe-EEEee-CCeeccccCceEEeeeceEEEeecccC
Q psy11143        124 SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR-ISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQ  201 (940)
Q Consensus       124 ~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~-ItW~k-~g~~i~~~~~~~~~~~~sL~I~~v~~~  201 (940)
                      .....+.|.|...+.+ +...+....+.+|+++.|.|.+.+.+.+. ++|++ ++..+....++....++.|.|.+++.+
T Consensus        76 ~~~~~~~l~V~~~~~~-~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  154 (289)
T 3ejj_X           76 AGSTTIHLYVKDPAHS-WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL  154 (289)
T ss_dssp             --CEEEEEEECCSSCS-EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGG
T ss_pred             cceeEEEEEEeCCCcc-eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccc
Confidence            8777888888764443 66677888999999999999999877665 99986 666666666677777788999999999


Q ss_pred             CCceEEEEEE-cCCcceeeeeeeeecC---CCCeeeeCCCeeEEecCCeEEEEEEEee-eCCCeEEEEECCeecCCCCce
Q psy11143        202 DSGLYRCTAS-NLLGEDVAEGYLTVTG---APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHV  276 (940)
Q Consensus       202 DsG~YtC~a~-N~~g~~s~s~~L~V~~---~~p~~~~~p~~~~v~~G~~v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~  276 (940)
                      |+|.|+|.+. +..+..+..+.|.|..   .+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+......
T Consensus       155 d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~  234 (289)
T 3ejj_X          155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNS  234 (289)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEE
T ss_pred             cCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCc
Confidence            9999999999 5556666777888874   5677777787788889999999999998 799999999999988754332


Q ss_pred             EEe----ecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        277 TYE----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       277 ~~~----~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      ...    ..+..|.|.++..+|+|.|+|.|.|..|....++.|.+.
T Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~  280 (289)
T 3ejj_X          235 DFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV  280 (289)
T ss_dssp             EECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred             ccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEE
Confidence            211    123459999999999999999999999999998888775

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=1.4e-30  Score=289.05  Aligned_cols=269  Identities=26%  Similarity=0.474  Sum_probs=144.8

Q ss_pred             cCCceeecCCCcEEEEEEeCCC-CCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  222 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~-P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~  222 (940)
                      .+....+.+|+++.|.|.+.+. |.+.++|++++..+....++.. .++.|.|.+++.+|+|.|+|.+.|. +..+..+.
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~   91 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFS   91 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe-ccceEEEeecccccCEEEEEEEEeC-CeEEEEEE
Confidence            4777889999999999999986 6789999999988876555443 4568999999999999999999998 77777777


Q ss_pred             eeecCC---------------------CCeeee----CCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCce-
Q psy11143        223 LTVTGA---------------------PPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-  276 (940)
Q Consensus       223 L~V~~~---------------------~p~~~~----~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~-  276 (940)
                      |.|...                     +|.+..    .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+. 
T Consensus        92 l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~  171 (334)
T 1ry7_B           92 VRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG  171 (334)
T ss_dssp             ---------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTT
T ss_pred             EEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccc
Confidence            777642                     222221    123467889999999999999999999999999988765432 


Q ss_pred             --EEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeecc--CCeEEE-cCCceeecCCCeEEEEEeecCcCC
Q psy11143        277 --TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR--APRLVV-KPFDMRAPAGSSVEIPCKPDGEPL  351 (940)
Q Consensus       277 --~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~--~P~i~~-~p~~~~v~~G~~vtL~C~v~g~P~  351 (940)
                        .......+|.|.++..+|+|.|+|.|.|..|.....+.|.|....  +|.+.. .+....+.+|+.++|.|.+.|.|.
T Consensus       172 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~  251 (334)
T 1ry7_B          172 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ  251 (334)
T ss_dssp             CCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSC
T ss_pred             ceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCC
Confidence              222334569999999999999999999999988888888886532  344433 345678899999999999999999


Q ss_pred             CeEEEEe----CCeeeccCCc--EEEee----------eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        352 PRISWSK----DEAEFVEDRN--HKIHR----------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       352 p~i~W~k----~g~~i~~~~~--~~i~~----------~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      |.|.|+|    +|..+..+..  ..+..          .++|.|.++..+|+|.|+|.|.|..|....++.|.|...+.
T Consensus       252 p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          252 PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE  330 (334)
T ss_dssp             EEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred             CeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCC
Confidence            9999999    6666654332  11111          13799999999999999999999999999999999987653

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=288.86  Aligned_cols=274  Identities=19%  Similarity=0.287  Sum_probs=218.5

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeC-------CCCCCeEEEeeCCeec--ccc-CceEEeeeceEEEeecccCCCceE
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPD-------GEPLPRISWSKDEAEF--VED-RNHKIHRTGSLRLYNIGPQDSGLY  206 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~-------g~P~p~ItW~k~g~~i--~~~-~~~~~~~~~sL~I~~v~~~DsG~Y  206 (940)
                      ..|.+...+....+.+|+++.|.|.+.       +.|.+.|.|++++..+  ... .......+++|.|.+++.+|+|.|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   96 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTY   96 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEE
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEE
Confidence            357788888999999999999999998       8899999999998873  332 222334567899999999999999


Q ss_pred             EEEEEcCCcceeeeeeeeecCCCCee-eeCCCeeEEecCCeEEEEEE-----EeeeCCCeEEEEECCeecCCC-CceEEe
Q psy11143        207 RCTASNLLGEDVAEGYLTVTGAPPIF-IQRPVSTTYSTGSTSRITCL-----VEGHPLPQMTWFHDGNSLDSD-DHVTYE  279 (940)
Q Consensus       207 tC~a~N~~g~~s~s~~L~V~~~~p~~-~~~p~~~~v~~G~~v~L~C~-----v~G~P~p~ItW~k~g~~l~~~-~~~~~~  279 (940)
                      +|.+.|..|.....+.|.|...++.. ........+.+|+.+.|.|.     +.|.|.+.+.|+++|..+... .++...
T Consensus        97 ~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~  176 (339)
T 3o4o_C           97 VCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV  176 (339)
T ss_dssp             ECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEEC
T ss_pred             EEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEc
Confidence            99999999988888888888544322 12233457889999999999     788999999999999998765 455555


Q ss_pred             ecCeEEEEeeeccCCCeEEEEEEEeCCCC----ceeEEEEEEeec---cCCeEEEcCCceeecCCCeEEEEEee---cCc
Q psy11143        280 HDGFVLVLNGVRESDAGVYNCVAQNSEGS----AESVAMIRINGH---RAPRLVVKPFDMRAPAGSSVEIPCKP---DGE  349 (940)
Q Consensus       280 ~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs----~~~s~~l~V~~~---~~P~i~~~p~~~~v~~G~~vtL~C~v---~g~  349 (940)
                      .....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|...   .+|.+...+....+.+|++++|.|.+   .|.
T Consensus       177 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~  256 (339)
T 3o4o_C          177 RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGT  256 (339)
T ss_dssp             TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSC
T ss_pred             CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCC
Confidence            44457999999999999999999999874    345566666543   26777777777788999999999999   899


Q ss_pred             C-CCeEEEEeCCeeec---------cCCcEEEeeec------eEEEecCCCCCC-eEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        350 P-LPRISWSKDEAEFV---------EDRNHKIHRTG------SLRLYNIGPQDS-GLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       350 P-~p~i~W~k~g~~i~---------~~~~~~i~~~~------sL~I~~v~~~D~-G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      | .+.+.|++++..+.         ...++.+..++      +|.|.++..+|. |.|+|.|.|..|+.+..+.+.+.
T Consensus       257 P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          257 PLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             CSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred             CCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence            9 88999999987643         22333333344      799999999997 99999999999999888776554

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=2.2e-30  Score=287.46  Aligned_cols=272  Identities=25%  Similarity=0.418  Sum_probs=142.7

Q ss_pred             EeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      ...|....+.+|+.++|.|.+.+. |.+.|.|+|+|..+....+..+  .+..|.|.+++.+|+|.|+|.+.|. |....
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~   88 (334)
T 1ry7_B           12 PGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV--GPQRLQVLNASHEDSGAYSCRQRLT-QRVLC   88 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe--ccceEEEeecccccCEEEEEEEEeC-CeEEE
Confidence            334788899999999999999886 6789999999998875544433  3456899999999999999999998 66666


Q ss_pred             EEEEEEeccc--------------------CCeeEe----cCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccC
Q psy11143        128 VAMIRINGHR--------------------APRLVV----KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR  183 (940)
Q Consensus       128 ~~~L~V~~~~--------------------~P~~~~----~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~  183 (940)
                      ...|.|...+                    +|.+..    .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....
T Consensus        89 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~  168 (334)
T 1ry7_B           89 HFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH  168 (334)
T ss_dssp             ------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTS
T ss_pred             EEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccc
Confidence            6666665432                    222221    1123578899999999999999999999999998876543


Q ss_pred             ceE----EeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCC---Ceeee-CCCeeEEecCCeEEEEEEEee
Q psy11143        184 NHK----IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP---PIFIQ-RPVSTTYSTGSTSRITCLVEG  255 (940)
Q Consensus       184 ~~~----~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~---p~~~~-~p~~~~v~~G~~v~L~C~v~G  255 (940)
                      +..    ......|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+   |.+.. .+....+..|+.+.|.|.+.|
T Consensus       169 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g  248 (334)
T 1ry7_B          169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYS  248 (334)
T ss_dssp             STTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBC
T ss_pred             cccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEec
Confidence            321    1223479999999999999999999999988888888887532   33322 356778999999999999999


Q ss_pred             eCCCeEEEEE----CCeecCCCCce--EEeec---------CeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeec
Q psy11143        256 HPLPQMTWFH----DGNSLDSDDHV--TYEHD---------GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH  320 (940)
Q Consensus       256 ~P~p~ItW~k----~g~~l~~~~~~--~~~~~---------g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~  320 (940)
                      .|.|.+.|++    +|..+......  .+...         ...|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus       249 ~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  328 (334)
T 1ry7_B          249 DAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA  328 (334)
T ss_dssp             SSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECS
T ss_pred             CCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEEC
Confidence            9999999999    77776544321  11111         125999999999999999999999999999999998764


Q ss_pred             cCC
Q psy11143        321 RAP  323 (940)
Q Consensus       321 ~~P  323 (940)
                      .+|
T Consensus       329 ~~~  331 (334)
T 1ry7_B          329 EEE  331 (334)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=8.1e-29  Score=275.57  Aligned_cols=260  Identities=16%  Similarity=0.189  Sum_probs=198.7

Q ss_pred             CcEEEecCCeEEEEEEeecc---------CCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCe-EEEEEEEeCC
Q psy11143         53 VSTTYSTGSTSRITCLVEGH---------PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAG-VYNCVAQNSE  122 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~---------P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG-~YtC~a~n~~  122 (940)
                      ..+.+.+|+++.|.|.+.+.         |.+.|+|+|++..+....+.   ..+..|.|.+++.+|+| .|+|.|.|..
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~  113 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VKNGDLWIANYTSNDSHRRYLCTVTTKN  113 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT---EETTEEEESSCCGGGGGCCEEEEEECTT
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce---eecceEEEcCCChHhCCCcEEEEEEeCC
Confidence            45678999999999999874         55799999999876543332   23456799999999999 9999999998


Q ss_pred             CceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCC-CCeEEEeeCCeeccccCceEEeeeceEEEeecccC
Q psy11143        123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ  201 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P-~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~  201 (940)
                      |.......+.+... +|.+...+....+.+|+.+.|.|.+.|.| .+.++|++++..+..........++.|.|.+++.+
T Consensus       114 g~~~~~~~~~v~~~-~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~  192 (329)
T 3oq3_B          114 GDCVQGIVRSHIRK-PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELE  192 (329)
T ss_dssp             SCEEEEEEEEEECC-CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGG
T ss_pred             CceeeEEEEEEEcC-CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChh
Confidence            87555443333332 34444443344577899999999999999 89999999999886433333333678999999999


Q ss_pred             CCceEEEEEEcC--Ccceee----eeeeeecCCCC---eeeeCCCeeEEecCCeEEEEEEEeeeC---CC-eEEEEECCe
Q psy11143        202 DSGLYRCTASNL--LGEDVA----EGYLTVTGAPP---IFIQRPVSTTYSTGSTSRITCLVEGHP---LP-QMTWFHDGN  268 (940)
Q Consensus       202 DsG~YtC~a~N~--~g~~s~----s~~L~V~~~~p---~~~~~p~~~~v~~G~~v~L~C~v~G~P---~p-~ItW~k~g~  268 (940)
                      |+|.|+|.|.|.  .|....    .+.|.|...+.   ... .+....+.+|+.++|.|.+.|.|   .| .+.|+++|.
T Consensus       193 D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~  271 (329)
T 3oq3_B          193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG  271 (329)
T ss_dssp             GCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTS
T ss_pred             hCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCe
Confidence            999999999987  554433    36677774441   222 67778899999999999999998   77 899999998


Q ss_pred             ec-CCCCceEEe--e----cCeEEEEeeeccCCCe-EEEEEEEeCCCCceeEEEEEE
Q psy11143        269 SL-DSDDHVTYE--H----DGFVLVLNGVRESDAG-VYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       269 ~l-~~~~~~~~~--~----~g~sL~I~~v~~~DsG-~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      .+ ..+......  .    ...+|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus       272 ~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          272 WIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             CBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             eeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            84 433332221  1    2345999999999999 999999999999988877766

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.96  E-value=2.4e-29  Score=281.17  Aligned_cols=266  Identities=19%  Similarity=0.252  Sum_probs=175.6

Q ss_pred             CCceeecCCCcEEEEEEeCCCCC-----------CeEEEeeCCee------cc--ccCceEEeeeceEEEeecccCCCce
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPL-----------PRISWSKDEAE------FV--EDRNHKIHRTGSLRLYNIGPQDSGL  205 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~-----------p~ItW~k~g~~------i~--~~~~~~~~~~~sL~I~~v~~~DsG~  205 (940)
                      ...+.+.+|+++.|.|.+.+.|.           +.++|++++..      +.  .........++.|.|.+++.+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            45677899999999999998765           89999997742      11  1122223446689999999999999


Q ss_pred             EEEEEEcCCcceeeeeeeeecCCCCeee---eCCCeeEEecCCeEEEEEEE-----eeeCCCeEEEEECCeecCCCCceE
Q psy11143        206 YRCTASNLLGEDVAEGYLTVTGAPPIFI---QRPVSTTYSTGSTSRITCLV-----EGHPLPQMTWFHDGNSLDSDDHVT  277 (940)
Q Consensus       206 YtC~a~N~~g~~s~s~~L~V~~~~p~~~---~~p~~~~v~~G~~v~L~C~v-----~G~P~p~ItW~k~g~~l~~~~~~~  277 (940)
                      |+|.|.|..+.....+.|.|...++...   ..+....+.+|+.+.|.|.+     .|.|.+.++|+|++..+....  .
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~--~  171 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN--N  171 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCS--S
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcc--c
Confidence            9999999998888888888885433222   22445678899999999985     778999999999999986543  3


Q ss_pred             EeecCeEEEEeeeccCCCeEEEEEEEeCC-CCc---eeEEEEEEeecc----CCeEEEcCCce--eecCCCeEEEEEeec
Q psy11143        278 YEHDGFVLVLNGVRESDAGVYNCVAQNSE-GSA---ESVAMIRINGHR----APRLVVKPFDM--RAPAGSSVEIPCKPD  347 (940)
Q Consensus       278 ~~~~g~sL~I~~v~~~DsG~YtC~A~N~~-Gs~---~~s~~l~V~~~~----~P~i~~~p~~~--~v~~G~~vtL~C~v~  347 (940)
                      +..++..|.|.++..+|+|.|+|.|.|.. |..   .....|.|....    +|.+...+...  .+.+|++++|.|.+.
T Consensus       172 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~  251 (349)
T 4dep_C          172 VIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVY  251 (349)
T ss_dssp             EEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEE
T ss_pred             eeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEE
Confidence            44455679999999999999999999987 443   344445554321    56665554432  788999999999999


Q ss_pred             ----CcCCCeEEEEeCCeeecc-CCcEEE------------eeeceEEEecCCCCCC-eEEEEEEEeCCeeEEEEEEEEE
Q psy11143        348 ----GEPLPRISWSKDEAEFVE-DRNHKI------------HRTGSLRLYNIGPQDS-GLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       348 ----g~P~p~i~W~k~g~~i~~-~~~~~i------------~~~~sL~I~~v~~~D~-G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                          |.|.|.|.|+++|..+.. ..++.+            ...++|.|.++..+|. |.|+|.|.|..|....++.|.|
T Consensus       252 ~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v  331 (349)
T 4dep_C          252 FSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ  331 (349)
T ss_dssp             ECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC---
T ss_pred             EccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEee
Confidence                679999999999987765 222221            1234699999999999 9999999999999999999998


Q ss_pred             ecC
Q psy11143        410 TGE  412 (940)
Q Consensus       410 ~~~  412 (940)
                      +.+
T Consensus       332 ~~~  334 (349)
T 4dep_C          332 KVP  334 (349)
T ss_dssp             ---
T ss_pred             ecC
Confidence            753

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.96  E-value=1.9e-29  Score=277.61  Aligned_cols=266  Identities=20%  Similarity=0.327  Sum_probs=205.0

Q ss_pred             CCcEEEecCCeEEEEEEeeccC-CCeEEEEECCEeecC--CCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV  128 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P-~p~V~W~kdg~~I~~--~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~  128 (940)
                      ...+.+.+|+.+.|.|.+.+.| .+.|.|+|+|..+..  ....++...+..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (315)
T 1itb_B           12 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   91 (315)
T ss_dssp             CCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred             ceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence            3467899999999999999877 789999999875432  2222333334467999999999999999999998877766


Q ss_pred             EEEEEecccCCeeEecC---CceeecCCCcEEEEEEe------CCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecc
Q psy11143        129 AMIRINGHRAPRLVVKP---FDMRAPAGSSVEIPCKP------DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG  199 (940)
Q Consensus       129 ~~L~V~~~~~P~~~~~p---~~~~v~~Ge~vtL~C~v------~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~  199 (940)
                      ..+.+... +|.+...+   ....+.+|+++.|.|.+      .|.|.+.++|++++..+..........++.|.|.+++
T Consensus        92 ~~v~v~~~-~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~  170 (315)
T 1itb_B           92 ISAKFVEN-EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVA  170 (315)
T ss_dssp             CCCEEECC-CTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCC
T ss_pred             EEEEEeCC-CCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEece
Confidence            66665432 23332222   23568899999999998      8899999999999998865444445566789999999


Q ss_pred             cCCCceEEEEEE-cCCcce---eeeeeeeec----CCCCeeeeCCCe-eEEecCCeEEEEEEEeeeCCCeEEEEECCeec
Q psy11143        200 PQDSGLYRCTAS-NLLGED---VAEGYLTVT----GAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL  270 (940)
Q Consensus       200 ~~DsG~YtC~a~-N~~g~~---s~s~~L~V~----~~~p~~~~~p~~-~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l  270 (940)
                      .+|+|.|+|.|. |..|..   ...+.+.+.    ..+|.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|+++|..+
T Consensus       171 ~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i  250 (315)
T 1itb_B          171 EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI  250 (315)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEEC
T ss_pred             ehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEEC
Confidence            999999999999 777765   334444343    255666655543 57889999999999999999999999999999


Q ss_pred             CCCCceEEe------e--------cCeEEEEeeeccCC-CeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        271 DSDDHVTYE------H--------DGFVLVLNGVRESD-AGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       271 ~~~~~~~~~------~--------~g~sL~I~~v~~~D-sG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .........      .        ....|.|.++..+| +|.|+|.|.|..|....++.|.|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             CTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             CcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            865432211      1        12369999999999 999999999999999988887774

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=3.3e-29  Score=290.34  Aligned_cols=302  Identities=17%  Similarity=0.220  Sum_probs=204.7

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCce---EEEEEEEEEeC----CCeEEeCCCcEEEecCCeEEEEEEeecc-CCC-e
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGV---YRGDLHVTVNA----PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-Q   76 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~---~~~~v~l~V~~----pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p-~   76 (940)
                      +..+|+|.+++.+|+|.|+|.+.|..+.   ....+.|.|..    +|.+...+....+.+|+.++|.|.+.|. |.+ .
T Consensus        77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  156 (444)
T 1igt_B           77 NTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT  156 (444)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCE
T ss_pred             CeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcE
Confidence            4579999999999999999999987654   22235666663    4555433333335899999999999884 776 9


Q ss_pred             EEEEECCEeecC--CCCe----EEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe----------------
Q psy11143         77 MTWFHDGNSLDS--DDHV----TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN----------------  134 (940)
Q Consensus        77 V~W~kdg~~I~~--~~~~----~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~----------------  134 (940)
                      |+|+|++..+..  ....    .+. ....|.|.++..+| |.|+|.|.|..+.......+.+.                
T Consensus       157 v~W~~~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  234 (444)
T 1igt_B          157 LTWNSGSLSSGVHTFPAVLQSDLYT-LSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPN  234 (444)
T ss_dssp             EEEGGGTBCTTEEECCCEEETTEEE-EEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSC
T ss_pred             EEEecCCCCCCeEecCccccCCcEE-EEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcc
Confidence            999999876321  1111    111 12357999999999 99999999999986655555431                


Q ss_pred             cccCCeeEecCCc-ee-ecCCCcEEEEEEeCCCC----CCeEEEeeCCeeccccCce--E------EeeeceEEEeeccc
Q psy11143        135 GHRAPRLVVKPFD-MR-APAGSSVEIPCKPDGEP----LPRISWSKDEAEFVEDRNH--K------IHRTGSLRLYNIGP  200 (940)
Q Consensus       135 ~~~~P~~~~~p~~-~~-v~~Ge~vtL~C~v~g~P----~p~ItW~k~g~~i~~~~~~--~------~~~~~sL~I~~v~~  200 (940)
                      ....|.+...+.. .. +.+|++++|.|.+.|.+    .+.|+|++++..+......  .      ....+.|.|.+++.
T Consensus       235 ~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  314 (444)
T 1igt_B          235 LLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW  314 (444)
T ss_dssp             CCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHH
T ss_pred             cCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHh
Confidence            1113554333333 33 58999999999999873    3699999999877532211  1      12345799999999


Q ss_pred             CCCceEEEEEEcCCcceeeeeeeee---cCCCCeeeeCCCeeEEecCCeEEEEEEEee-eCCC-eEEEEECCeecCCCCc
Q psy11143        201 QDSGLYRCTASNLLGEDVAEGYLTV---TGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDH  275 (940)
Q Consensus       201 ~DsG~YtC~a~N~~g~~s~s~~L~V---~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G-~P~p-~ItW~k~g~~l~~~~~  275 (940)
                      +|+|.|+|.|.|..+.......+.+   ...+|.+...+.......+..++|.|.+.| +|.+ .|+|+|+|..+.....
T Consensus       315 ~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  394 (444)
T 1igt_B          315 MSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKN  394 (444)
T ss_dssp             HTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE
T ss_pred             ccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEcccccc
Confidence            9999999999998886633333322   124555544333222223445999999999 5665 9999999998843211


Q ss_pred             e--EEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        276 V--TYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       276 ~--~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .  ....++.     .|.|.....+|.|.|+|.|.|.....
T Consensus       395 ~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~~  435 (444)
T 1igt_B          395 TEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHN  435 (444)
T ss_dssp             CCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSGG
T ss_pred             ccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcCC
Confidence            1  1123332     25666666778999999999986543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=4.9e-28  Score=258.14  Aligned_cols=240  Identities=17%  Similarity=0.247  Sum_probs=194.4

Q ss_pred             CeeEecCCceeecCCCcEEEEEEeCCCCCC-eEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       139 P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p-~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      |.+...|....+.+|+.+.|.|.+.+.|.+ .++|++++..+...       ...|.|.+++.+|+|.|+|.+.|..+. 
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~s-   73 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVNDSGEYRCQRGLSGRS-   73 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEESSSCCC-
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------CCeEEEecCCcccCeEEEEEEecCCcc-
Confidence            667888888899999999999999998888 99999999887543       457999999999999999999886554 


Q ss_pred             eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEE-eeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCe
Q psy11143        218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAG  296 (940)
Q Consensus       218 s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v-~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG  296 (940)
                       ..+.|.|.. ++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...      ..+..|.|.++..+|+|
T Consensus        74 -~~~~l~v~~-~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------~~~~~l~i~~~~~~d~G  144 (262)
T 3rjd_A           74 -DPIQLEIHR-GW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------HWNSNLTILKTNISHNG  144 (262)
T ss_dssp             -CCEEEEEEC-SS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------EECCCEEESSCCGGGCE
T ss_pred             -ccEEEEEec-cc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------CCCCeEEEEECChhhCE
Confidence             345566663 33 3334455678899999999999 67888899999999887422      22345999999999999


Q ss_pred             EEEEEEEeCCCCceeEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCC-C----eEEEEeCCeeeccCCcEE
Q psy11143        297 VYNCVAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-P----RISWSKDEAEFVEDRNHK  370 (940)
Q Consensus       297 ~YtC~A~N~~Gs~~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~-p----~i~W~k~g~~i~~~~~~~  370 (940)
                      .|+|.|.|..+.....+.|.|... .+|.+...+ ...+.+|+.++|.|.+.+.|. |    .+.|++++..+...    
T Consensus       145 ~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~----  219 (262)
T 3rjd_A          145 TYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR----  219 (262)
T ss_dssp             EEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE----
T ss_pred             EEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc----
Confidence            999999999987777778888764 355555554 567889999999999999986 5    47899999876422    


Q ss_pred             EeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        371 IHRTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       371 i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                       ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       220 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          220 -NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             -ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             -CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence             245689999999999999999999999965

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.96  E-value=4.7e-30  Score=285.70  Aligned_cols=276  Identities=17%  Similarity=0.257  Sum_probs=216.0

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEee-------ccCCCeEEEEECCEe--ecCCCCeEEEeeceEEEEcccccCCCe
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVE-------GHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLVLNGVRESDAG  112 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~-------g~P~p~V~W~kdg~~--I~~~~~~~~~~~gs~L~I~~v~~~DsG  112 (940)
                      ....|.+...|....+.+|+.+.|.|.+.       +.|.+.|.|+|++..  +......++...+..|.|.+++.+|+|
T Consensus        15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   94 (339)
T 3o4o_C           15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSG   94 (339)
T ss_dssp             ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCE
T ss_pred             chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCE
Confidence            34568888999999999999999999998       889999999999987  443334455445556899999999999


Q ss_pred             EEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEE-----eCCCCCCeEEEeeCCeecccc-CceE
Q psy11143        113 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVED-RNHK  186 (940)
Q Consensus       113 ~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~-----v~g~P~p~ItW~k~g~~i~~~-~~~~  186 (940)
                      .|+|.+.|..|.....+.|.|...+.+..........+.+|+.+.|.|.     +.+.|.+.+.|++++..+... .++.
T Consensus        95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~  174 (339)
T 3o4o_C           95 TYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL  174 (339)
T ss_dssp             EEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEE
T ss_pred             EEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeE
Confidence            9999999998877778888887644322122233457889999999999     788999999999999888655 3343


Q ss_pred             Eeee-ceEEEeecccCCCceEEEEEEcCCcc----eeeeeeeeecCC----CCeeeeCCCeeEEecCCeEEEEEEE---e
Q psy11143        187 IHRT-GSLRLYNIGPQDSGLYRCTASNLLGE----DVAEGYLTVTGA----PPIFIQRPVSTTYSTGSTSRITCLV---E  254 (940)
Q Consensus       187 ~~~~-~sL~I~~v~~~DsG~YtC~a~N~~g~----~s~s~~L~V~~~----~p~~~~~p~~~~v~~G~~v~L~C~v---~  254 (940)
                      .... +.|.|.+++.+|+|.|+|.|.|..|.    .+..+.|.|...    +|.+...+....+..|+.+.|.|.+   .
T Consensus       175 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~  254 (339)
T 3o4o_C          175 SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGT  254 (339)
T ss_dssp             ECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESS
T ss_pred             EcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCC
Confidence            3332 47999999999999999999998773    456677777642    4566666677788999999999999   8


Q ss_pred             eeC-CCeEEEEECCeecCCC---------CceEEeecCe-----EEEEeeeccCCC-eEEEEEEEeCCCCceeEEEEEE
Q psy11143        255 GHP-LPQMTWFHDGNSLDSD---------DHVTYEHDGF-----VLVLNGVRESDA-GVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       255 G~P-~p~ItW~k~g~~l~~~---------~~~~~~~~g~-----sL~I~~v~~~Ds-G~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      |.| .+.+.|++++..+...         .+..+..++.     +|.|.++..+|. |.|+|.|.|..|..+..+.+.+
T Consensus       255 g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          255 GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             SCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             CCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence            999 8899999999876422         2222333332     499999999997 9999999999999888766554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.96  E-value=9.5e-29  Score=276.31  Aligned_cols=267  Identities=18%  Similarity=0.247  Sum_probs=174.5

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC-----------CeEEEEECCEe------ec-CCCCeEEEeeceEEEEcccccCCCeE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL-----------PQMTWFHDGNS------LD-SDDHVTYEHDGFVLVLNGVRESDAGV  113 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~-----------p~V~W~kdg~~------I~-~~~~~~~~~~gs~L~I~~v~~~DsG~  113 (940)
                      ...+.+.+|+.+.|.|.+.+.|.           +.|.|+|++..      +. .....++...+..|.|.+++.+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            45678999999999999987654           89999998842      21 01233444455678999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEecccCC--eeEecCCceeecCCCcEEEEEEe-----CCCCCCeEEEeeCCeeccccCceE
Q psy11143        114 YNCVAQNSEGSAESVAMIRINGHRAP--RLVVKPFDMRAPAGSSVEIPCKP-----DGEPLPRISWSKDEAEFVEDRNHK  186 (940)
Q Consensus       114 YtC~a~n~~g~~~~~~~L~V~~~~~P--~~~~~p~~~~v~~Ge~vtL~C~v-----~g~P~p~ItW~k~g~~i~~~~~~~  186 (940)
                      |+|.|.|..+.....+.|.|...+..  .....+....+.+|+.+.|.|.+     .+.|.+.++|++++..+....+. 
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~-  172 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV-  172 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSE-
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccce-
Confidence            99999999888887888888764321  11123445678899999999985     77899999999999988554332 


Q ss_pred             EeeeceEEEeecccCCCceEEEEEEcCC-cce---eeeeeeeecCC-----CCeeeeCCCee--EEecCCeEEEEEEEe-
Q psy11143        187 IHRTGSLRLYNIGPQDSGLYRCTASNLL-GED---VAEGYLTVTGA-----PPIFIQRPVST--TYSTGSTSRITCLVE-  254 (940)
Q Consensus       187 ~~~~~sL~I~~v~~~DsG~YtC~a~N~~-g~~---s~s~~L~V~~~-----~p~~~~~p~~~--~v~~G~~v~L~C~v~-  254 (940)
                      ......|.|.+++.+|+|.|+|.|.|.. |..   +..+.|.|...     +|.+...+...  .+..|+.++|.|.+. 
T Consensus       173 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~  252 (349)
T 4dep_C          173 IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF  252 (349)
T ss_dssp             EEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEE
T ss_pred             eecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEE
Confidence            2334579999999999999999999986 443   56666777643     45555444332  788999999999998 


Q ss_pred             ---eeCCCeEEEEECCeecCC-CCceEEee-----------cCeEEEEeeeccCCC-eEEEEEEEeCCCCceeEEEEEEe
Q psy11143        255 ---GHPLPQMTWFHDGNSLDS-DDHVTYEH-----------DGFVLVLNGVRESDA-GVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       255 ---G~P~p~ItW~k~g~~l~~-~~~~~~~~-----------~g~sL~I~~v~~~Ds-G~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                         |.|.|.+.|+++|..+.. ..++.+..           ...+|.|.++..+|+ |.|+|.|.|..|....++.|.|.
T Consensus       253 ~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          253 SFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             CCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC----
T ss_pred             ccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence               568899999999988865 22222210           122399999999999 99999999999999888888875


Q ss_pred             e
Q psy11143        319 G  319 (940)
Q Consensus       319 ~  319 (940)
                      .
T Consensus       333 ~  333 (349)
T 4dep_C          333 V  333 (349)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=1.9e-27  Score=253.62  Aligned_cols=241  Identities=16%  Similarity=0.285  Sum_probs=195.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +|.+...|....+.+|+.++|.|.+.+.|.+ .|+|+|+|..+...        +..|.|.+++.+|+|.|+|.+.|..+
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~--------~~~l~i~~~~~~d~G~Y~C~~~~~~~   72 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------TPSYRITSASVNDSGEYRCQRGLSGR   72 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC--------SSEEEESSCCGGGCEEEEEEESSSCC
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc--------CCeEEEecCCcccCeEEEEEEecCCc
Confidence            4788889999999999999999999998887 99999999988643        34579999999999999999988665


Q ss_pred             ceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCC
Q psy11143        124 SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD  202 (940)
Q Consensus       124 ~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~D  202 (940)
                      ..  .+.|.|..  . .+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...     .....|.|.+++.+|
T Consensus        73 s~--~~~l~v~~--~-~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----~~~~~l~i~~~~~~d  142 (262)
T 3rjd_A           73 SD--PIQLEIHR--G-WLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWNSNLTILKTNISH  142 (262)
T ss_dssp             CC--CEEEEEEC--S-SEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EECCCEEESSCCGGG
T ss_pred             cc--cEEEEEec--c-ceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----CCCCeEEEEECChhh
Confidence            44  34455543  2 34455566778899999999999 67888899999999877432     235689999999999


Q ss_pred             CceEEEEEEcCCcceeeeeeeeecCC--CCeeeeCCCeeEEecCCeEEEEEEEeeeCC-C----eEEEEECCeecCCCCc
Q psy11143        203 SGLYRCTASNLLGEDVAEGYLTVTGA--PPIFIQRPVSTTYSTGSTSRITCLVEGHPL-P----QMTWFHDGNSLDSDDH  275 (940)
Q Consensus       203 sG~YtC~a~N~~g~~s~s~~L~V~~~--~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~-p----~ItW~k~g~~l~~~~~  275 (940)
                      +|.|+|.+.|..+..+..+.|.|...  +|.+...+ ...+.+|+.+.|.|.+.+.|. |    .+.|++++..+...  
T Consensus       143 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~--  219 (262)
T 3rjd_A          143 NGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--  219 (262)
T ss_dssp             CEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--
T ss_pred             CEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--
Confidence            99999999999988888888888753  45555544 567889999999999999876 5    37899999877522  


Q ss_pred             eEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        276 VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       276 ~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                          ..+..|.|.++..+|+|.|+|.|.|..|...
T Consensus       220 ----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~  250 (262)
T 3rjd_A          220 ----NTSSEYQILTARREDSGLYWCEAATEDGNVL  250 (262)
T ss_dssp             ----ESCCEEEESSCCGGGCEEEEEEEEETTSSCE
T ss_pred             ----CCCceEEEEEechhhCeEEEEEEEcccCceE
Confidence                2344699999999999999999999999763

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.96  E-value=1.5e-26  Score=273.87  Aligned_cols=356  Identities=18%  Similarity=0.240  Sum_probs=227.6

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC----CeEEEEEC--CEe---ec-------------CCCCeEEEee----ceEEEE
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL----PQMTWFHD--GNS---LD-------------SDDHVTYEHD----GFVLVL  103 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~----p~V~W~kd--g~~---I~-------------~~~~~~~~~~----gs~L~I  103 (940)
                      .+|..+.+.+|++++|.|.+.+.+.    ..|.|||.  |..   +.             ...++.+..+    ...|.|
T Consensus         5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (512)
T 1zvo_C            5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL   84 (512)
T ss_pred             ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence            3466788999999999999987543    68999985  221   10             0123333321    256899


Q ss_pred             cccccCCCeEEEEEEEeCCC----------c---eEEEEEEEEecc--cCCeeEe-cCCceeecCCCcEEEEEEeCCC-C
Q psy11143        104 NGVRESDAGVYNCVAQNSEG----------S---AESVAMIRINGH--RAPRLVV-KPFDMRAPAGSSVEIPCKPDGE-P  166 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g----------~---~~~~~~L~V~~~--~~P~~~~-~p~~~~v~~Ge~vtL~C~v~g~-P  166 (940)
                      .+++.+|+|.|.|.+.+..+          .   ....+.|.|...  ..|.+.. .+.......|+.++|.|.+.+. |
T Consensus        85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P  164 (512)
T 1zvo_C           85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHP  164 (512)
T ss_pred             CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeec
Confidence            99999999999999988642          1   112345666532  2344432 2221112357899999999986 7


Q ss_pred             CC-eEEEeeCCeecc--ccC-----ceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeee-----------eeeecC
Q psy11143        167 LP-RISWSKDEAEFV--EDR-----NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-----------YLTVTG  227 (940)
Q Consensus       167 ~p-~ItW~k~g~~i~--~~~-----~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~-----------~L~V~~  227 (940)
                      .+ .|+|++++....  ...     ...+...+.|.|.....+ .|.|+|.|.|..+......           .+.+..
T Consensus       165 ~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~  243 (512)
T 1zvo_C          165 TSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTA  243 (512)
T ss_pred             CceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeC
Confidence            65 899999654321  000     011122345888888777 9999999999887654433           122220


Q ss_pred             ---------------------------------------------------CCCee-eeCCCeeEEecCCeEEEEEEEee
Q psy11143        228 ---------------------------------------------------APPIF-IQRPVSTTYSTGSTSRITCLVEG  255 (940)
Q Consensus       228 ---------------------------------------------------~~p~~-~~~p~~~~v~~G~~v~L~C~v~G  255 (940)
                                                                         .+|.+ ...+....+..|+.++|.|.+.|
T Consensus       244 pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g  323 (512)
T 1zvo_C          244 QPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVG  323 (512)
T ss_pred             CCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEec
Confidence                                                               12222 22333344667999999999998


Q ss_pred             eCC--CeEEEEECCeecCCCC---ceEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe-e---cc
Q psy11143        256 HPL--PQMTWFHDGNSLDSDD---HVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN-G---HR  321 (940)
Q Consensus       256 ~P~--p~ItW~k~g~~l~~~~---~~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~-~---~~  321 (940)
                      .++  ..|+|+++|..+....   ......++     +.|.|..+..+|.|.|+|.|.|..+... ...+... .   ..
T Consensus       324 ~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~  402 (512)
T 1zvo_C          324 SDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPV  402 (512)
T ss_pred             eECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCC
Confidence            633  3999999998865211   11111222     2488988889999999999999987654 3333221 1   24


Q ss_pred             CCeEEEcCCceeecCCCeEE-EEEeecCcCCC--eEEEEeCCeeeccCCcE----EEeee-------ceEEEecCCCCCC
Q psy11143        322 APRLVVKPFDMRAPAGSSVE-IPCKPDGEPLP--RISWSKDEAEFVEDRNH----KIHRT-------GSLRLYNIGPQDS  387 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vt-L~C~v~g~P~p--~i~W~k~g~~i~~~~~~----~i~~~-------~sL~I~~v~~~D~  387 (940)
                      +|.+...+...   .|+.++ |.|.+.|.+++  .|.|+|+|..+......    ....+       +.|.|.....+|.
T Consensus       403 ~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~  479 (512)
T 1zvo_C          403 KLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQP  479 (512)
T ss_pred             CCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCC
Confidence            67665544332   789999 99999986544  78999999987654211    11222       2466666666779


Q ss_pred             eEEEEEEEeCCeeEE--EEEEEEEe
Q psy11143        388 GLYRCTASNLLGEDV--AEGYLTVT  410 (940)
Q Consensus       388 G~YtC~A~N~~G~~~--~s~~L~V~  410 (940)
                      |.|+|.|.|......  ....|.|.
T Consensus       480 g~YtC~v~h~~l~~~~~~~~~~~v~  504 (512)
T 1zvo_C          480 ATYTCVVSHEDSRTLLNASRSLEVS  504 (512)
T ss_pred             CeEEEEEEecCCCCceEEEEEEEec
Confidence            999999999866533  34444443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=1.2e-27  Score=263.59  Aligned_cols=265  Identities=18%  Similarity=0.273  Sum_probs=197.6

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCC-----eEEEEECCEee-------------cCCCCeEEEe-------eceEEE
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHDGNSL-------------DSDDHVTYEH-------DGFVLV  102 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p-----~V~W~kdg~~I-------------~~~~~~~~~~-------~gs~L~  102 (940)
                      ++..|..+.+..|++++|.|.+.+.+.+     .|+|+|++...             ....+.++..       ....|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            4556778888999999999999887655     49999987532             2222333321       123489


Q ss_pred             EcccccCCCeEEEEEEEeC-CCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeecc
Q psy11143        103 LNGVRESDAGVYNCVAQNS-EGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFV  180 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~-~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~  180 (940)
                      |.+++.+|+|.|+|.+.+. .+.....+.|.  ....|.+...+....+..|+.+.+.|.+. +.|.+.++|++++..+.
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~--v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~  160 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR--VLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP  160 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEEC--CBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeee--eccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccc
Confidence            9999999999999998654 33333344444  44466777767777788899999999876 68999999999887765


Q ss_pred             ccCceE------EeeeceEEEeecccCCCceEEEEEEcCCccee--eeeeeeecCCCCeeee-CCCeeEEecCCeEEEEE
Q psy11143        181 EDRNHK------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV--AEGYLTVTGAPPIFIQ-RPVSTTYSTGSTSRITC  251 (940)
Q Consensus       181 ~~~~~~------~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s--~s~~L~V~~~~p~~~~-~p~~~~v~~G~~v~L~C  251 (940)
                      ......      ....+.|.|.++..+|+|.|+|.|.|..+...  ..+.|.|. .+|.+.. ......+..|+.++|.|
T Consensus       161 ~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-~~P~v~~~~~~~~~~~~g~~v~l~C  239 (313)
T 4fqp_A          161 NTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY-YPPEVSISGYDNNWYLGQNEATLTC  239 (313)
T ss_dssp             EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC-EEEEEEEECCCSCEETTCCCEEEEE
T ss_pred             ccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc-cCCccccccccceeecCCCeEEEEE
Confidence            432221      12233588999999999999999999876644  44455555 4555543 34455667789999999


Q ss_pred             EEeeeCCC-eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        252 LVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       252 ~v~G~P~p-~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      .+.|+|.| .|+|+|+|..+....   . ..+.+|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       240 ~~~g~P~p~~v~W~~~~~~l~~~~---~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  304 (313)
T 4fqp_A          240 DARSNPEPTGYNWSTTMGPLPPFA---V-AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKE  304 (313)
T ss_dssp             EEEEESCCCEEEEEETTBSCCTTE---E-EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EecCCCCCcEEEEEECCEECCCce---E-EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999 699999999886542   1 2345699999999999999999999999998888888864

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=3e-28  Score=264.48  Aligned_cols=265  Identities=16%  Similarity=0.276  Sum_probs=206.8

Q ss_pred             CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEe---eeceEEEeecccCCCceEEEEEEcCC
Q psy11143        138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       138 ~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~---~~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      +|.+...+....+.+|++++|.|.+.+.    +.|++++...     ....   ..+.|.|.+++.+|+|.|+|.+.|..
T Consensus         4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   74 (292)
T 4dkd_C            4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH-----WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDP   74 (292)
T ss_dssp             CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS-----CEECCBTTEEEEEESSCCGGGCSCEEECCCC--
T ss_pred             CceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc-----eEEeccCceEEEEEcccccccCEEEEEEEccCC
Confidence            5777788888899999999999999874    8999755421     1121   23489999999999999999999988


Q ss_pred             cceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCC--CeEEEEEC-CeecCCCCceEEeecCeEEEEeeec
Q psy11143        215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD-GNSLDSDDHVTYEHDGFVLVLNGVR  291 (940)
Q Consensus       215 g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~--p~ItW~k~-g~~l~~~~~~~~~~~g~sL~I~~v~  291 (940)
                      +..+..+.|.|...+..+...+....+.+|+.+.|.|.+.+ |.  +.++|+++ +..+....++....++. |.|.++.
T Consensus        75 ~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-L~i~~~~  152 (292)
T 4dkd_C           75 LGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHG-FTIHRAK  152 (292)
T ss_dssp             --CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSC-CEETTCC
T ss_pred             CCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCce-EEECCCC
Confidence            88888889999865555566778889999999999999998 44  78999998 66666665665555555 9999999


Q ss_pred             cCCCeEEEEEEEeCCCCcee-EEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCC
Q psy11143        292 ESDAGVYNCVAQNSEGSAES-VAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDR  367 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs~~~-s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~  367 (940)
                      .+|+|.|+|.|.|..+.... .+.|.|..  ..+|.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++..+....
T Consensus       153 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~  232 (292)
T 4dkd_C          153 FIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ  232 (292)
T ss_dssp             GGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCB
T ss_pred             HHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCc
Confidence            99999999999998775533 56666653  138888888888778899999999999987764 789999887654332


Q ss_pred             cEEE-----eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        368 NHKI-----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       368 ~~~i-----~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      ....     ...++|.|.++..+|+|.|+|.|.|..|..+.++.|.|....
T Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          233 QSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             EEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             cceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence            2211     234589999999999999999999999999999999998764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.96  E-value=2.3e-28  Score=284.52  Aligned_cols=303  Identities=17%  Similarity=0.285  Sum_probs=199.3

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCc------------eEEEEEEEEEeC----CCeEEeCCCcEEEecCCeEEEEEEe
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAG------------VYRGDLHVTVNA----PPIFIQRPVSTTYSTGSTSRITCLV   69 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g------------~~~~~v~l~V~~----pP~~~~~p~~~~V~eGesv~L~C~v   69 (940)
                      +..+|+|.+++.+|+|.|+|.+.|..|            .......|.|..    +|.+...+....+.+|+.++|.|.+
T Consensus        77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~  156 (457)
T 1hzh_H           77 NTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  156 (457)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEE
T ss_pred             CEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEE
Confidence            456899999999999999999998765            222334566654    5665555444457899999999999


Q ss_pred             ecc-CC-CeEEEEECCEeecCCCCeEE-Eeec-----eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecc-----
Q psy11143         70 EGH-PL-PQMTWFHDGNSLDSDDHVTY-EHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH-----  136 (940)
Q Consensus        70 ~g~-P~-p~V~W~kdg~~I~~~~~~~~-~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~-----  136 (940)
                      .|. |. +.|.|+|++..+........ ..++     ..|.|.++..+| |.|+|.|.|..+.......+.+...     
T Consensus       157 ~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~  235 (457)
T 1hzh_H          157 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHT  235 (457)
T ss_dssp             ESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCS
T ss_pred             eEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccc
Confidence            986 64 79999999965421100011 1111     357999999999 9999999998877655544443321     


Q ss_pred             ----------cCCee-EecCCcee-ecCCCcEEEEEEeCCCCCC----eEEEeeCCeeccccCce--EEeeeceEEEee-
Q psy11143        137 ----------RAPRL-VVKPFDMR-APAGSSVEIPCKPDGEPLP----RISWSKDEAEFVEDRNH--KIHRTGSLRLYN-  197 (940)
Q Consensus       137 ----------~~P~~-~~~p~~~~-v~~Ge~vtL~C~v~g~P~p----~ItW~k~g~~i~~~~~~--~~~~~~sL~I~~-  197 (940)
                                ..|.+ ...+.... +.+|++++|.|.+.|.|++    .|+|++++..+......  ....++.+.+.. 
T Consensus       236 ~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~  315 (457)
T 1hzh_H          236 CPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSV  315 (457)
T ss_dssp             CCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEE
T ss_pred             cCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEE
Confidence                      13444 33333332 6789999999999987543    99999999877532211  112233444443 


Q ss_pred             --cccCC---CceEEEEEEcCCcceeeeeeeee---cCCCCeeeeCCCe-eEEecCCeEEEEEEEeeeCCC--eEEEEEC
Q psy11143        198 --IGPQD---SGLYRCTASNLLGEDVAEGYLTV---TGAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLP--QMTWFHD  266 (940)
Q Consensus       198 --v~~~D---sG~YtC~a~N~~g~~s~s~~L~V---~~~~p~~~~~p~~-~~v~~G~~v~L~C~v~G~P~p--~ItW~k~  266 (940)
                        +...|   +|.|+|.|.|..+.......+.+   ...+|.+...+.. ..+..|+ +.|.|.+.|.+++  .|+|+|+
T Consensus       316 l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~  394 (457)
T 1hzh_H          316 LTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESN  394 (457)
T ss_dssp             ECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEEC
Confidence              23444   99999999987655433333332   1245555544333 3344455 9999999997554  9999999


Q ss_pred             CeecCCCCc--eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        267 GNSLDSDDH--VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       267 g~~l~~~~~--~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      |..+.....  .....++.     .|.|.....+|.|.|+|.|.|......
T Consensus       395 g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~~  445 (457)
T 1hzh_H          395 GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNH  445 (457)
T ss_dssp             TEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGGG
T ss_pred             CEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCCc
Confidence            998864322  11223332     255555556789999999999875543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.96  E-value=6.6e-29  Score=272.59  Aligned_cols=266  Identities=21%  Similarity=0.321  Sum_probs=199.2

Q ss_pred             CceeecCCCcEEEEEEeCC-CCCCeEEEeeCCeeccc-----------------cCceEEe----eeceEEEeecccCCC
Q psy11143        146 FDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVE-----------------DRNHKIH----RTGSLRLYNIGPQDS  203 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g-~P~p~ItW~k~g~~i~~-----------------~~~~~~~----~~~sL~I~~v~~~Ds  203 (940)
                      ..+.+.+|++++|.|.+.+ .+.+.|+|+|++.....                 ..+....    .+++|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            3577889999999999875 44557999985432211                 0111111    235799999999999


Q ss_pred             ceEEEEEEcC-CcceeeeeeeeecCCCCee-eeCCCeeEEecCCeEEEEEEE-eeeCCCeEEEEECCeecCCCCceEE--
Q psy11143        204 GLYRCTASNL-LGEDVAEGYLTVTGAPPIF-IQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTY--  278 (940)
Q Consensus       204 G~YtC~a~N~-~g~~s~s~~L~V~~~~p~~-~~~p~~~~v~~G~~v~L~C~v-~G~P~p~ItW~k~g~~l~~~~~~~~--  278 (940)
                      |.|+|.|.|. .+..+....+.+...++.. ...+.......|+.+.|.|.+ .|.|.+.|+|++++..+........  
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~  166 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNE  166 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTS
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeee
Confidence            9999999885 5566666777776444332 334555556678999999975 6899999999999988754321110  


Q ss_pred             -eecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCc-eeecCCCeEEEEEeecCcCCC-eEE
Q psy11143        279 -EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLP-RIS  355 (940)
Q Consensus       279 -~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~-~~v~~G~~vtL~C~v~g~P~p-~i~  355 (940)
                       ......|.|..+...|+|.|+|.|.|..+.......+.+.+..+|.+...+.+ ..+..|+.++|.|.+.|.|.| .|.
T Consensus       167 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~  246 (308)
T 4fom_A          167 TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSV  246 (308)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEE
T ss_pred             cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEE
Confidence             00112499999999999999999999988877776677666677877655543 466788999999999999999 699


Q ss_pred             EEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        356 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       356 W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      |+|++..+.....  ......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus       247 W~k~~~~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P  302 (308)
T 4fom_A          247 WSRLDGQWPDGLL--ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP  302 (308)
T ss_dssp             CCBSSSCCCSSCB--CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred             EEECCeECCCcEE--EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence            9999987754422  1223356788999999999999999999999999999999875

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=6.3e-28  Score=267.52  Aligned_cols=264  Identities=17%  Similarity=0.200  Sum_probs=184.3

Q ss_pred             eeEecCCceeecCCCcEEEEEEeCCC-CCCeEEEeeCCeeccc---------cCceEE--------eeeceEEEeecccC
Q psy11143        140 RLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVE---------DRNHKI--------HRTGSLRLYNIGPQ  201 (940)
Q Consensus       140 ~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p~ItW~k~g~~i~~---------~~~~~~--------~~~~sL~I~~v~~~  201 (940)
                      .+...+.+..+.+|+++.|.|.+.+. |.+.|+|++++.....         ..+...        ....+|.|.+++.+
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            45566778899999999999999987 8889999998754210         112222        23457999999999


Q ss_pred             CCceEEEEEEcCCcce-----eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC--eEEEEECCeecCCCC
Q psy11143        202 DSGLYRCTASNLLGED-----VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDD  274 (940)
Q Consensus       202 DsG~YtC~a~N~~g~~-----s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~  274 (940)
                      |+|.|+|.+.|..+..     ...+.|.|...+....+......+.+|+.+.|.|.+.|.|++  .++|+++|..+....
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~  164 (327)
T 2wng_A           85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ  164 (327)
T ss_dssp             GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred             cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc
Confidence            9999999999986641     234566666433222222334677899999999999998876  899999999887543


Q ss_pred             ceEEee--c-----CeEEEEeeeccCCCeEEEEEEEeCCCCc---eeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEE
Q psy11143        275 HVTYEH--D-----GFVLVLNGVRESDAGVYNCVAQNSEGSA---ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC  344 (940)
Q Consensus       275 ~~~~~~--~-----g~sL~I~~v~~~DsG~YtC~A~N~~Gs~---~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C  344 (940)
                      ......  +     ...|.|.....+|.|.|+|.|.|..+..   ..+..+.+....+|.+...+..  +.+|+.++|.|
T Consensus       165 ~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~C  242 (327)
T 2wng_A          165 TNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVTC  242 (327)
T ss_dssp             EEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEEE
T ss_pred             cccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEEE
Confidence            211110  1     1237777777777899999999998763   3344444455678888776554  78999999999


Q ss_pred             eecCcC-CC-eEEEEeCCeeeccCC--cEEEee------eceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        345 KPDGEP-LP-RISWSKDEAEFVEDR--NHKIHR------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       345 ~v~g~P-~p-~i~W~k~g~~i~~~~--~~~i~~------~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                      .+.|.| .+ .|.|+|+|..+....  ......      ...|.|..+..+|+|.|+|.|.|..|......
T Consensus       243 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~  313 (327)
T 2wng_A          243 QVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKS  313 (327)
T ss_dssp             EEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEE
T ss_pred             EEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhh
Confidence            999964 44 899999999875421  111111      23588899999999999999999999754433

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=1e-27  Score=265.32  Aligned_cols=270  Identities=20%  Similarity=0.267  Sum_probs=198.1

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeecc----CCCeEEEEECC--E-------------ee--cCCCCeEEE---eeceE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGH----PLPQMTWFHDG--N-------------SL--DSDDHVTYE---HDGFV  100 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~----P~p~V~W~kdg--~-------------~I--~~~~~~~~~---~~gs~  100 (940)
                      ++.+...|..+.+.+|++++|.|.+.+.    +.+.|.|+|++  .             .+  ....+..+.   .....
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            3445566777899999999999999876    44589999954  1             11  112333332   12345


Q ss_pred             EEEcccccCCCeEEEEE-EEeCCCceEEEEEEEEecccCCeeEecCCceeecCC---CcEEEEEE-eCCCCCCeEEEeeC
Q psy11143        101 LVLNGVRESDAGVYNCV-AQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG---SSVEIPCK-PDGEPLPRISWSKD  175 (940)
Q Consensus       101 L~I~~v~~~DsG~YtC~-a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~G---e~vtL~C~-v~g~P~p~ItW~k~  175 (940)
                      |.|.+++.+|+|.|+|. +.+..+.....+.|.|...+...+...+....+.+|   +.+.|.|. +.+.|.+.++|+++
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~  173 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR  173 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence            89999999999999998 555566666677777776433333445667788888   78999998 78899999999995


Q ss_pred             Ceeccc-----cCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeee-eCCCeeEEecCCeEEE
Q psy11143        176 EAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI-QRPVSTTYSTGSTSRI  249 (940)
Q Consensus       176 g~~i~~-----~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~-~~p~~~~v~~G~~v~L  249 (940)
                      +.....     .....+.....|.|.++..+|+|.|+|.|.|..+..+..+.|.|.. +|.+. ..+....+.+|+.++|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~-~P~~~~~~~~~~~~~~g~~~~l  252 (331)
T 3u83_A          174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-EPEVTIEGFDGNWYLQRMDVKL  252 (331)
T ss_dssp             SCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE-EEEEEEECCCSCCBTTCCCEEE
T ss_pred             CCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec-CCeEEEecCCCceEeCCCeEEE
Confidence            332211     1111222334688888999999999999999999888888888874 44444 4445566889999999


Q ss_pred             EEEEeeeCCCe-EEEEECCeecCCCCceEEeecCeEEEEe-eeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        250 TCLVEGHPLPQ-MTWFHDGNSLDSDDHVTYEHDGFVLVLN-GVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       250 ~C~v~G~P~p~-ItW~k~g~~l~~~~~~~~~~~g~sL~I~-~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      .|.+.|.|.|. +.|++++..+.....  .  .+.+|.|. ++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       253 ~C~~~g~p~p~~i~W~~~~~~~~~~~~--~--~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  320 (331)
T 3u83_A          253 TCKADANPPATEYHWTTLNGSLPKGVE--A--QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE  320 (331)
T ss_dssp             EEEEEEESCCCEEEEEETTBSCCTTEE--E--ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred             EEeCcCCCCCCEEEEEECCCcccccce--e--cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence            99999999998 999999998865422  1  33459999 9999999999999999999988877777754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=1.4e-27  Score=264.38  Aligned_cols=267  Identities=18%  Similarity=0.282  Sum_probs=198.7

Q ss_pred             CeeEecCCceeecCCCcEEEEEEeCCC----CCCeEEEeeCCe--e-------------c--cccCceEEe----eeceE
Q psy11143        139 PRLVVKPFDMRAPAGSSVEIPCKPDGE----PLPRISWSKDEA--E-------------F--VEDRNHKIH----RTGSL  193 (940)
Q Consensus       139 P~~~~~p~~~~v~~Ge~vtL~C~v~g~----P~p~ItW~k~g~--~-------------i--~~~~~~~~~----~~~sL  193 (940)
                      +.+...+.++.+.+|++++|.|.+.+.    +.+.+.|++++.  .             +  ....+..+.    .+++|
T Consensus        15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L   94 (331)
T 3u83_A           15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI   94 (331)
T ss_dssp             ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred             cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence            344555667889999999999999876    445799999541  1             1  112333332    24579


Q ss_pred             EEeecccCCCceEEEE-EEcCCcceeeeeeeeecCCCCee-eeCCCeeEEecC---CeEEEEEE-EeeeCCCeEEEEECC
Q psy11143        194 RLYNIGPQDSGLYRCT-ASNLLGEDVAEGYLTVTGAPPIF-IQRPVSTTYSTG---STSRITCL-VEGHPLPQMTWFHDG  267 (940)
Q Consensus       194 ~I~~v~~~DsG~YtC~-a~N~~g~~s~s~~L~V~~~~p~~-~~~p~~~~v~~G---~~v~L~C~-v~G~P~p~ItW~k~g  267 (940)
                      .|.+++.+|+|.|+|. +.+..+.....+.|.|...+... ...+....+.+|   +.+.|.|. +.+.|.|.++|++++
T Consensus        95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~  174 (331)
T 3u83_A           95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL  174 (331)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESS
T ss_pred             EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCC
Confidence            9999999999999998 55667777888888888543332 235666778888   78999997 889999999999963


Q ss_pred             eecC-------CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcC-CceeecCCCe
Q psy11143        268 NSLD-------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP-FDMRAPAGSS  339 (940)
Q Consensus       268 ~~l~-------~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p-~~~~v~~G~~  339 (940)
                      ....       ......+   ...|.|..+..+|+|.|+|.|.|..|..+.++.|.|.  .+|.+...+ ....+.+|++
T Consensus       175 ~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~--~~P~~~~~~~~~~~~~~g~~  249 (331)
T 3u83_A          175 KGEAEYQEIRNPNGTVTV---ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ--YEPEVTIEGFDGNWYLQRMD  249 (331)
T ss_dssp             CCEEEEEEEECTTSCEEE---EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE--EEEEEEEECCCSCCBTTCCC
T ss_pred             CCccccceeECCCCcEEE---EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe--cCCeEEEecCCCceEeCCCe
Confidence            2221       1111111   1248888889999999999999999887776666664  566666444 4456889999


Q ss_pred             EEEEEeecCcCCCe-EEEEeCCeeeccCCcEEEeeeceEEEe-cCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        340 VEIPCKPDGEPLPR-ISWSKDEAEFVEDRNHKIHRTGSLRLY-NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       340 vtL~C~v~g~P~p~-i~W~k~g~~i~~~~~~~i~~~~sL~I~-~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      ++|.|.+.|.|.|. |.|++++..+....   ...+++|.|. ++..+|+|.|+|.|.|..|..+.++.|.|+..+
T Consensus       250 ~~l~C~~~g~p~p~~i~W~~~~~~~~~~~---~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  322 (331)
T 3u83_A          250 VKLTCKADANPPATEYHWTTLNGSLPKGV---EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA  322 (331)
T ss_dssp             EEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred             EEEEEeCcCCCCCCEEEEEECCCcccccc---eecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence            99999999999998 99999998875442   2356789999 999999999999999999999999999998764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=1.2e-29  Score=293.43  Aligned_cols=302  Identities=15%  Similarity=0.231  Sum_probs=204.9

Q ss_pred             cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEe----CCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC-eEEE
Q psy11143          6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN----APPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTW   79 (940)
Q Consensus         6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~----~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p-~V~W   79 (940)
                      +..+|+|.+++.+|+|.|+|.+.|..+.......|.|.    .+|.+...+....+.+|+.++|.|.+.|. |.+ .|.|
T Consensus        76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W  155 (434)
T 1igy_B           76 NTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW  155 (434)
T ss_dssp             CBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             CEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEE
Confidence            35689999999999999999999865443344556665    24555443333346899999999999985 766 9999


Q ss_pred             EECCEeecCC--CC----eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEec----------ccCCeeEe
Q psy11143         80 FHDGNSLDSD--DH----VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING----------HRAPRLVV  143 (940)
Q Consensus        80 ~kdg~~I~~~--~~----~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~----------~~~P~~~~  143 (940)
                      +|++..+...  ..    ..+. ....|.|.++..+| |.|+|.|.|..+.......+.+.+          ...|.+.+
T Consensus       156 ~k~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~  233 (434)
T 1igy_B          156 NSGSLSSGVHTFPAVLQSDLYT-LSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFI  233 (434)
T ss_dssp             TTTTBCSSEEECCCEECSSCEE-EEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEE
T ss_pred             eeCCcCCCeEecCceecCCcEE-EEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEE
Confidence            9998753210  00    0111 12347999999999 999999999998865554443321          00144433


Q ss_pred             cCCcee--ecCCCcEEEEEEeCCCC----CCeEEEeeCCeeccccCce--------EEeeeceEEEeecccCCCceEEEE
Q psy11143        144 KPFDMR--APAGSSVEIPCKPDGEP----LPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSGLYRCT  209 (940)
Q Consensus       144 ~p~~~~--v~~Ge~vtL~C~v~g~P----~p~ItW~k~g~~i~~~~~~--------~~~~~~sL~I~~v~~~DsG~YtC~  209 (940)
                      .+....  +.+|+.++|.|.+.|.+    .+.|+|++++..+......        .....+.|.|.++..+|+|.|+|.
T Consensus       234 ~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  313 (434)
T 1igy_B          234 FPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCR  313 (434)
T ss_dssp             ECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCC
T ss_pred             eCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEE
Confidence            333322  88999999999999874    3589999998776432111        111234699999999999999999


Q ss_pred             EEcCCcceeeeeeeee--c-CCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC--eEEEEECCeecCCCCceEE--eecC
Q psy11143        210 ASNLLGEDVAEGYLTV--T-GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTY--EHDG  282 (940)
Q Consensus       210 a~N~~g~~s~s~~L~V--~-~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~~~~--~~~g  282 (940)
                      |.|..+.......+.+  . ..+|.+...+.......|+.++|.|.+.|.+++  .|+|+|+|..+........  ..+|
T Consensus       314 a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g  393 (434)
T 1igy_B          314 VNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDG  393 (434)
T ss_dssp             BCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSS
T ss_pred             EECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCC
Confidence            9998886533333322  1 135555444433334467789999999996433  8999999998853321111  2233


Q ss_pred             -----eEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        283 -----FVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       283 -----~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                           ..|.|.....+|.|.|+|.|.|.....
T Consensus       394 ~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  425 (434)
T 1igy_B          394 SYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN  425 (434)
T ss_dssp             CEEEEEEEEEEHHHHHTTCCEEEEEEETTSGG
T ss_pred             cEEEEEEEEECchhccCCCEEEEEEEcCCCCC
Confidence                 236677777788999999999987553

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=5.5e-28  Score=265.21  Aligned_cols=262  Identities=18%  Similarity=0.279  Sum_probs=193.6

Q ss_pred             CcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeec---------------C--CCCeEEE---eeceEEEEcccccCCC
Q psy11143         53 VSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLD---------------S--DDHVTYE---HDGFVLVLNGVRESDA  111 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~---------------~--~~~~~~~---~~gs~L~I~~v~~~Ds  111 (940)
                      ..+++.+|++++|.|.+.+ .+.+.|+|+|++....               .  ..+..+.   .....|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            4677899999999999865 4455899998653211               1  1112221   1224589999999999


Q ss_pred             eEEEEEEEeCC-CceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeeccccCc----e
Q psy11143        112 GVYNCVAQNSE-GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRN----H  185 (940)
Q Consensus       112 G~YtC~a~n~~-g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~~~~~----~  185 (940)
                      |.|+|.|.|.. |.......+.+...+.+.+...+.......|+.+.|.|.+ .|.|.+.|+|++++..+.....    .
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~  166 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNE  166 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTS
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeee
Confidence            99999999864 4445566677766554455556666777789999999986 5799999999999887754321    1


Q ss_pred             EEeeeceEEEeecccCCCceEEEEEEcCCcceee--eeeeeecCCCCeeee-CCCeeEEecCCeEEEEEEEeeeCCC-eE
Q psy11143        186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA--EGYLTVTGAPPIFIQ-RPVSTTYSTGSTSRITCLVEGHPLP-QM  261 (940)
Q Consensus       186 ~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~--s~~L~V~~~~p~~~~-~p~~~~v~~G~~v~L~C~v~G~P~p-~I  261 (940)
                      .....+.|.|..+..+|+|.|+|.|.|..+....  .+.|.|. .+|.+.. ......+..|+.++|.|.+.|.|.| .+
T Consensus       167 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v  245 (308)
T 4fom_A          167 TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ-YAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS  245 (308)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC-EEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred             cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe-cCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence            1223346999999999999999999998776544  4455555 3444443 3444567788999999999999998 79


Q ss_pred             EEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        262 TWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       262 tW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .|+|++..+.....   ..++..|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       246 ~W~k~~~~~~~~~~---~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          246 VWSRLDGQWPDGLL---ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             ECCBSSSCCCSSCB---CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred             EEEECCeECCCcEE---EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999988865422   2345557788999999999999999999998888777775

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.95  E-value=1.3e-26  Score=271.23  Aligned_cols=301  Identities=16%  Similarity=0.248  Sum_probs=201.3

Q ss_pred             CcccEEEECCCCCCCCeEEEEEEEcCCce------EEEEEEEEEeC----CCeEEeCCCcEEEecCCeEEEEEEeecc-C
Q psy11143          5 RSSTELVISGVQREHGGRYSCVAGNPAGV------YRGDLHVTVNA----PPIFIQRPVSTTYSTGSTSRITCLVEGH-P   73 (940)
Q Consensus         5 ~s~~tL~I~~v~~sDsG~Y~C~a~n~~g~------~~~~v~l~V~~----pP~~~~~p~~~~V~eGesv~L~C~v~g~-P   73 (940)
                      ++..+|+|.+++.+|+|.|+|.+.|..|.      ....+.|.|..    +|.+...+.. .+.+|+.++|.|.+.|. |
T Consensus        77 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~L~C~~~g~~P  155 (475)
T 1iga_A           77 ATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGNVVIACLVQGFFP  155 (475)
T ss_pred             CCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCeEEEEEEEeeecC
Confidence            34578999999999999999999987652      22345666652    4555443322 23799999999999986 6


Q ss_pred             C-C-eEEEEECCEeecCCCCe-EE-Eee-----ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEec---------
Q psy11143         74 L-P-QMTWFHDGNSLDSDDHV-TY-EHD-----GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING---------  135 (940)
Q Consensus        74 ~-p-~V~W~kdg~~I~~~~~~-~~-~~~-----gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~---------  135 (940)
                      . + .|.|++++......... .. ..+     ...|.|..+..+|+|.|+|.|.|..+.. ....+.+.+         
T Consensus       156 ~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~v~l~V~~~~~~~~~  234 (475)
T 1iga_A          156 QEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS-QDVTVPCPVPSTPPTPSP  234 (475)
T ss_pred             CCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc-eeeeEecccccCcccccc
Confidence            5 4 99999988542211000 00 011     1347888999999999999999988642 223333211         


Q ss_pred             ---------ccCCeeEe-cCCceeecCCCcEEEEEEeCCCCC---CeEEEeeCCeeccccCc--------eEEeeeceEE
Q psy11143        136 ---------HRAPRLVV-KPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRN--------HKIHRTGSLR  194 (940)
Q Consensus       136 ---------~~~P~~~~-~p~~~~v~~Ge~vtL~C~v~g~P~---p~ItW~k~g~~i~~~~~--------~~~~~~~sL~  194 (940)
                               ...|.+.. .+....+.+|++++|.|.+.|.++   +.|+| + +..+.....        ......+.|.
T Consensus       235 ~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~  312 (475)
T 1iga_A          235 STPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLP  312 (475)
T ss_pred             cccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEEE
Confidence                     01344423 333344689999999999998644   58999 4 333321110        0112345799


Q ss_pred             EeecccCCCceEEEEEEcCCcceeeeeeeee--cCCCCeeeeCCC-eeEEecCCeEEEEEEEeee-CC-CeEEEEECCee
Q psy11143        195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV--TGAPPIFIQRPV-STTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNS  269 (940)
Q Consensus       195 I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V--~~~~p~~~~~p~-~~~v~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~  269 (940)
                      |.++..+|+|.|+|.|.|..+.......|.+  ...+|.+...+. ...+..|+.+.|.|.+.|. |+ +.|+|+|+|..
T Consensus       313 I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~  392 (475)
T 1iga_A          313 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE  392 (475)
T ss_pred             EchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEE
Confidence            9999999999999999999887654444532  225565554433 3346789999999999996 43 49999999999


Q ss_pred             cCCCCce----EEe---ecC-----eEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        270 LDSDDHV----TYE---HDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       270 l~~~~~~----~~~---~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      +......    ...   .+|     ..|.|.....+|.|.|+|.|.|.....
T Consensus       393 l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~  444 (475)
T 1iga_A          393 LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL  444 (475)
T ss_pred             CCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCCC
Confidence            8755311    112   222     236677777788999999999987553

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=4.4e-28  Score=263.09  Aligned_cols=265  Identities=17%  Similarity=0.254  Sum_probs=205.4

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+|.+...+....+.+|++++|.|.+.+.    |.|++++..     ...+.  .....|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            47889889999999999999999999873    999976542     22222  22357899999999999999999998


Q ss_pred             CCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCC--CeEEEeeC-CeeccccCceEEeeeceEEEeec
Q psy11143        122 EGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL--PRISWSKD-EAEFVEDRNHKIHRTGSLRLYNI  198 (940)
Q Consensus       122 ~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k~-g~~i~~~~~~~~~~~~sL~I~~v  198 (940)
                      .+.....+.|.|...+. .+...+....+.+|+.+.|.|.+.+ |.  +.++|+++ +..+....+......+.|.|.++
T Consensus        74 ~~~~~~~~~l~V~~~~~-~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (292)
T 4dkd_C           74 PLGGSAAIHLYVKDPAR-PWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRA  151 (292)
T ss_dssp             ---CCEEECCEECCSSC-CEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTC
T ss_pred             CCCcceEEEEEEcCccc-cccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCC
Confidence            88777777788776433 3455667888999999999999998 54  78999996 55555555555555667999999


Q ss_pred             ccCCCceEEEEEEcCCcce-eeeeeeeecC---CCCeeeeCCCeeEEecCCeEEEEEEEeeeCC-CeEEEEECCeecCCC
Q psy11143        199 GPQDSGLYRCTASNLLGED-VAEGYLTVTG---APPIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFHDGNSLDSD  273 (940)
Q Consensus       199 ~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~---~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~-p~ItW~k~g~~l~~~  273 (940)
                      +.+|+|.|+|.+.|..+.. +..+.|.|..   .+|.+...+....+.+|+.+.|.|.+.+.|. +.+.|++++..+...
T Consensus       152 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~  231 (292)
T 4dkd_C          152 KFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP  231 (292)
T ss_dssp             CGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCC
T ss_pred             CHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccC
Confidence            9999999999999887754 4467777774   3777777777777789999999999998765 478899998877654


Q ss_pred             CceEEee----cCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        274 DHVTYEH----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       274 ~~~~~~~----~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      .......    ...+|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       232 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          232 QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             BEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             ccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            4333222    223599999999999999999999999988888887764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=3.3e-27  Score=253.92  Aligned_cols=238  Identities=19%  Similarity=0.260  Sum_probs=184.8

Q ss_pred             eeecCCCcEEEEEEeCC-CCCC--eEEEeeCCeeccccCceEEeeeceEEEeec---ccCCCce--EEEEEEcCCcceee
Q psy11143        148 MRAPAGSSVEIPCKPDG-EPLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNI---GPQDSGL--YRCTASNLLGEDVA  219 (940)
Q Consensus       148 ~~v~~Ge~vtL~C~v~g-~P~p--~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v---~~~DsG~--YtC~a~N~~g~~s~  219 (940)
                      ..+.+|++++|.|.+.+ .|.+  .++|++++..+..   ........+.+..+   +.+|+|.  |+|.+.|..+..+.
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~   89 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET   89 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC---EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc---eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEE
Confidence            36889999999999998 7776  9999999988754   22223345666555   7788885  99999999999888


Q ss_pred             eeeeeecCCCC-eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEE
Q psy11143        220 EGYLTVTGAPP-IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY  298 (940)
Q Consensus       220 s~~L~V~~~~p-~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~Y  298 (940)
                      .+.|.|...++ .+.  +....+.+|+.+.|.|.+.  |.+.|+|  +|..+.....      ...|.|..+..+|+|.|
T Consensus        90 ~~~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~------~~~l~i~~~~~~~~g~Y  157 (265)
T 2oz4_A           90 LQTVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGP------RAQLLLKATPEDNGRSF  157 (265)
T ss_dssp             EEEEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSS------EECCEEECCGGGTTEEE
T ss_pred             EEEEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCC------cEEEEEccccccCCceE
Confidence            88999875443 333  3456788999999999998  8999999  8877743321      12388999999999999


Q ss_pred             EEEEEeCC-CCce---eEEEEEEeeccCCeEEEc--CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe
Q psy11143        299 NCVAQNSE-GSAE---SVAMIRINGHRAPRLVVK--PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH  372 (940)
Q Consensus       299 tC~A~N~~-Gs~~---~s~~l~V~~~~~P~i~~~--p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~  372 (940)
                      +|.|.|.. |...   ..+.|.|.  .+|.+...  |.+..+.+|+.++|.|.+.|+|.|.+.|+|++..+.        
T Consensus       158 ~C~a~n~~~g~~~~~s~~~~l~V~--~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~--------  227 (265)
T 2oz4_A          158 SCSATLEVAGQLIHKNQTRELRVL--YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL--------  227 (265)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEEEE--EEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC--------
T ss_pred             EEEEEcCCCCCcccccccEEEEEE--eCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC--------
Confidence            99998654 6654   44455554  56665443  446688999999999999999999999999987332        


Q ss_pred             eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        373 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       373 ~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      ..+.+.  .++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       228 ~~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          228 PIGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             CTTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence            223333  37889999999999999999999999999753

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.95  E-value=4.7e-27  Score=260.54  Aligned_cols=263  Identities=19%  Similarity=0.329  Sum_probs=182.5

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCEeec----C-----CCCeEEE-------eeceEEEEccccc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLD----S-----DDHVTYE-------HDGFVLVLNGVRE  108 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~I~----~-----~~~~~~~-------~~gs~L~I~~v~~  108 (940)
                      ..+...|..+.+.+|++++|.|.+.+. |.+.|.|+|++..+.    .     ..+....       .....|.|.+++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            456667888999999999999999987 888999999875421    0     1122221       2234589999999


Q ss_pred             CCCeEEEEEEEeCCCceE-----EEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCC--eEEEeeCCeeccc
Q psy11143        109 SDAGVYNCVAQNSEGSAE-----SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVE  181 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g~~~-----~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k~g~~i~~  181 (940)
                      +|+|.|+|.|.|..+...     ..+.|.|...+.+.....+ ...+.+|+.+.|.|.+.+.|++  .++|++++..+..
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence            999999999999876422     2456777765544344333 4678899999999999987765  8999999988864


Q ss_pred             cCce--------EEeeeceEEEeecccCCCceEEEEEEcCCcce---eeeeeeeec-CCCCeeeeCCCeeEEecCCeEEE
Q psy11143        182 DRNH--------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGED---VAEGYLTVT-GAPPIFIQRPVSTTYSTGSTSRI  249 (940)
Q Consensus       182 ~~~~--------~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~---s~s~~L~V~-~~~p~~~~~p~~~~v~~G~~v~L  249 (940)
                      ....        .+.....|.|.....+|.|.|+|.|.|..+..   .....+.+. ..+|.+...+..  +.+|+.++|
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l  240 (327)
T 2wng_A          163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNV  240 (327)
T ss_dssp             EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEE
T ss_pred             cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEE
Confidence            3321        12223357777777777899999999987652   334444322 245665554433  779999999


Q ss_pred             EEEEeeeCC-C-eEEEEECCeecCCC--CceEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCcee
Q psy11143        250 TCLVEGHPL-P-QMTWFHDGNSLDSD--DHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAES  311 (940)
Q Consensus       250 ~C~v~G~P~-p-~ItW~k~g~~l~~~--~~~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~  311 (940)
                      .|.+.|.|+ + .|+|+++|..+...  .......++     ..|.|..+..+|+|.|+|.|.|..+....
T Consensus       241 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s  311 (327)
T 2wng_A          241 TCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVS  311 (327)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEE
T ss_pred             EEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCch
Confidence            999999644 4 89999999988543  122223333     34888889999999999999999987644

>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...

Probab=99.95  E-value=3.7e-30  Score=302.63  Aligned_cols=149  Identities=29%  Similarity=0.475  Sum_probs=128.0

Q ss_pred             HhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCCccccc
Q psy11143        646 ANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGA  725 (940)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  725 (940)
                      +++|||..+....+|+..   .||||+||+|||+.||.||||+|||+|||||.|+||+++|.||+..+.++|.       
T Consensus         1 ~~~~gc~~~~~~~~C~~~---~~yRt~DG~CNNl~~P~wGaa~t~f~R~lpp~Y~DGv~~Pr~~~~~~~~~g~-------   70 (595)
T 3q9k_A            1 SWEVGCGAPVPLVKCDEN---SPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGF-------   70 (595)
T ss_dssp             CCCSCCCSSCCCCCCCSS---CSSCCSSCTTSSSSSTTTTCSSEECBCSSCCCCTTSSSCCTTSSTTCCBTTB-------
T ss_pred             CCCCCCCCCCCCCCCCCC---CCccCCCCCccCcCCcccCCCCCCccCCCCcccccccccccccccccccCCC-------
Confidence            478999999999999875   8999999999999999999999999999999999999999999998888775       


Q ss_pred             ccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCccccceecccc
Q psy11143        726 ILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQV  805 (940)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  805 (940)
                                                                                           .         +
T Consensus        71 ---------------------------------------------------------------------~---------l   72 (595)
T 3q9k_A           71 ---------------------------------------------------------------------R---------V   72 (595)
T ss_dssp             ---------------------------------------------------------------------C---------C
T ss_pred             ---------------------------------------------------------------------C---------C
Confidence                                                                                 2         5


Q ss_pred             CCCCCCcchhhhhhhhhhhcccCCcccccCCCCCChhHHhHhhhceeeeeeecCCCceeeEEEeecCCCCccccCCCcee
Q psy11143        806 DGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFSPRPTTSITPDPVIT  885 (940)
Q Consensus       806 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  885 (940)
                      |.+|.                                     +++.|.+                  .++..+.+|+.+|
T Consensus        73 P~~R~-------------------------------------VS~~l~~------------------~~~~~~~~~~~~t   97 (595)
T 3q9k_A           73 PLARE-------------------------------------VSNKIVG------------------YLDEEGVLDQNRS   97 (595)
T ss_dssp             CCHHH-------------------------------------HHHHHTC------------------CSCCTTCEEEEEE
T ss_pred             CCHHH-------------------------------------HHHHHHh------------------cccccCCCCCCch
Confidence            66666                                     5554443                  1233455788899


Q ss_pred             cccccccceecCCCCCCccccccccc-cCCCcccccCCCCCccceecCCCCCC
Q psy11143        886 HMVMQWGQFLDHDLDHAIPATSLESW-EGIDCKKSCAFSPPCFPMEVPHDDPG  937 (940)
Q Consensus       886 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  937 (940)
                      +|+||||||++||+.++....+...| .|++|+.+|...++||||+||++||.
T Consensus        98 ~~~~~wGQfi~HDi~~t~~~~~~~~~~~~~~C~~~c~~~~~C~pI~ip~~Dp~  150 (595)
T 3q9k_A           98 LLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPK  150 (595)
T ss_dssp             HHHHHHHHHHHHHHCCCCBCCSCTTCSHHHHHHHHCCCBTTBCCEECCTTCHH
T ss_pred             HHHHHHHHHHHhhhhccCccccccccCCCcCccccccCCCCceeeeCCCCCCc
Confidence            99999999999999988777665555 78899999999999999999999985

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=257.34  Aligned_cols=261  Identities=16%  Similarity=0.225  Sum_probs=184.8

Q ss_pred             eeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEe----eeceEEEeecccCCCceEEEEEEcCCc
Q psy11143        140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       140 ~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~----~~~sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      .+........+.+|++++|.|.+.+.    ++|++++..+..  +....    ..+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 ~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (289)
T 3mjg_X            2 VVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG   75 (289)
T ss_dssp             CBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE--EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred             eecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc--ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence            34444556788999999999999874    999999887632  11111    135799999999999999999999887


Q ss_pred             c---eeeeeeeeecCCCCeeeeCCCe---eEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEee
Q psy11143        216 E---DVAEGYLTVTGAPPIFIQRPVS---TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG  289 (940)
Q Consensus       216 ~---~s~s~~L~V~~~~p~~~~~p~~---~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~  289 (940)
                      .   ....+.+.|......+......   ..+.+|+.+.|.|.+. .|.|.++|++++.......  ....... +.   
T Consensus        76 ~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~--~~~~~~~-~~---  148 (289)
T 3mjg_X           76 LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV--PYDHQRG-FS---  148 (289)
T ss_dssp             ---CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC--CEETTTE-EE---
T ss_pred             CCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce--eecCCcC-ee---
Confidence            6   3344445444212222222222   6788999999999998 7888999998753222211  1111111 21   


Q ss_pred             eccCCCeEEEEEEEeCCCCcee-EEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCc
Q psy11143        290 VRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN  368 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~Gs~~~-s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~  368 (940)
                       ...|+|.|+|.|.|..+.... ...+.|....+|.+...+....+.+|++++|.|.+.|.|.|.|.|++++........
T Consensus       149 -~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~  227 (289)
T 3mjg_X          149 -GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVE  227 (289)
T ss_dssp             -ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCC
T ss_pred             -eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccc
Confidence             357999999999987765543 345566544577777777777899999999999999999999999987754322111


Q ss_pred             -E-E------EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        369 -H-K------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       369 -~-~------i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                       . .      ....++|.|.++..+|+|.|+|.|.|..|....++.|.|.+.+.
T Consensus       228 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          228 PVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             CEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             ccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence             1 1      11346899999999999999999999999999999999998764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=1.4e-26  Score=249.00  Aligned_cols=236  Identities=19%  Similarity=0.322  Sum_probs=184.5

Q ss_pred             EEecCCeEEEEEEeec-cCCC--eEEEEECCEeecCCCCeEEEeeceEEEEccc---ccCCCeE--EEEEEEeCCCceEE
Q psy11143         56 TYSTGSTSRITCLVEG-HPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV---RESDAGV--YNCVAQNSEGSAES  127 (940)
Q Consensus        56 ~V~eGesv~L~C~v~g-~P~p--~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v---~~~DsG~--YtC~a~n~~g~~~~  127 (940)
                      .+.+|+.++|.|.+.| .|.+  .|+|+|+|..+..    .+...+..+.+..+   +.+|+|.  |+|.+.|..|....
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~   89 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET   89 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEE
Confidence            6889999999999998 7776  9999999998864    33333444566555   7788885  99999999998888


Q ss_pred             EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEE
Q psy11143        128 VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR  207 (940)
Q Consensus       128 ~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~Yt  207 (940)
                      .+.|.|...+.|.+..  ....+.+|+.++|.|.+.  |.+.++|  +|..+....     ..+.|.|..+..+|.|.|+
T Consensus        90 ~~~l~V~~~p~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~-----~~~~l~i~~~~~~~~g~Y~  158 (265)
T 2oz4_A           90 LQTVTIYSFPAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG-----PRAQLLLKATPEDNGRSFS  158 (265)
T ss_dssp             EEEEEEECCCCCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS-----SEECCEEECCGGGTTEEEE
T ss_pred             EEEEEEeCCCCceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC-----CcEEEEEccccccCCceEE
Confidence            8888887765555553  456688899999999998  8899999  777663322     2346889999999999999


Q ss_pred             EEEEcCC-ccee---eeeeeeecCCCCeeeeC--CCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeec
Q psy11143        208 CTASNLL-GEDV---AEGYLTVTGAPPIFIQR--PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD  281 (940)
Q Consensus       208 C~a~N~~-g~~s---~s~~L~V~~~~p~~~~~--p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~  281 (940)
                      |.|.|.. |...   ..+.|.|. .+|.+...  +....+.+|+.++|.|.+.|+|.|.++|++++..+..        .
T Consensus       159 C~a~n~~~g~~~~~s~~~~l~V~-~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~--------~  229 (265)
T 2oz4_A          159 CSATLEVAGQLIHKNQTRELRVL-YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP--------I  229 (265)
T ss_dssp             EEEEEECSSSEEEEEEEEEEEEE-EEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC--------T
T ss_pred             EEEEcCCCCCcccccccEEEEEE-eCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCC--------C
Confidence            9998644 6544   56677776 34444332  5577899999999999999999999999999873222        2


Q ss_pred             CeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        282 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       282 g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      +. +  ..+..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       230 g~-~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          230 GE-S--VTVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             TS-C--EECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             Cc-E--EEeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence            33 2  2478899999999999999999888888875

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.95  E-value=9.5e-27  Score=252.72  Aligned_cols=261  Identities=16%  Similarity=0.200  Sum_probs=180.8

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee---ceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~---gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      |.+...+....+.+|++++|.|.+.+.    |+|+|++..+.  .......+   ...|.|.+++.+|+|.|+|.|.|..
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   74 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSR   74 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC--
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccC
Confidence            344555667889999999999999874    99999998873  12222222   2568999999999999999999988


Q ss_pred             CceE-EEEEEEEecc--cCCeeEecCCc--eeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEee
Q psy11143        123 GSAE-SVAMIRINGH--RAPRLVVKPFD--MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN  197 (940)
Q Consensus       123 g~~~-~~~~L~V~~~--~~P~~~~~p~~--~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~  197 (940)
                      |... ....+.|.+.  ..+.+...+..  ..+.+|+.+.|.|.+. .|.+.++|++.+........  ......+.   
T Consensus        75 g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~--~~~~~~~~---  148 (289)
T 3mjg_X           75 GLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP--YDHQRGFS---  148 (289)
T ss_dssp             ----CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC--EETTTEEE---
T ss_pred             CCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee--ecCCcCee---
Confidence            7622 2334444433  22222121111  6789999999999999 77889999886422211111  11111111   


Q ss_pred             cccCCCceEEEEEEcCCcce-eeeeeeeecC-CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCc
Q psy11143        198 IGPQDSGLYRCTASNLLGED-VAEGYLTVTG-APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH  275 (940)
Q Consensus       198 v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~-~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~  275 (940)
                       ...|+|.|+|.|.|..+.. +....+.|.. .+|.+...+....+.+|++++|.|.+.|.|.|.++|++++........
T Consensus       149 -~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~  227 (289)
T 3mjg_X          149 -GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVE  227 (289)
T ss_dssp             -ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCC
T ss_pred             -eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccc
Confidence             3679999999999876654 3344566654 456666666667899999999999999999999999988765433221


Q ss_pred             eE-Ee------ecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        276 VT-YE------HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       276 ~~-~~------~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      .. ..      ....+|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       228 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          228 PVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV  278 (289)
T ss_dssp             CEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             ccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence            11 11      1224599999999999999999999999999999998875

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.95  E-value=9.4e-25  Score=247.15  Aligned_cols=351  Identities=20%  Similarity=0.294  Sum_probs=238.7

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeecC-----CCCeEEEe--eceEEEEcccccCCCeEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLDS-----DDHVTYEH--DGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~~-----~~~~~~~~--~gs~L~I~~v~~~DsG~Yt  115 (940)
                      +|.+.. +.+..+.+|+.++|.|.+.|.|.+.|+|+|+  |..+..     ..+..+..  ....|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            466665 6677888999999999999999999999999  888864     23444442  3456899999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccC--ceEEee---e
Q psy11143        116 CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHR---T  190 (940)
Q Consensus       116 C~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~--~~~~~~---~  190 (940)
                      |.|.|..|.....+.|.|..  +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....  +..+..   .
T Consensus        80 C~a~n~~g~~~~~~~l~V~~--~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~  157 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEY--APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK  157 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEE--EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSC
T ss_pred             EEEEeCCCCcceEEEEEEEe--CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCE
Confidence            99999999887788787764  4555555555578999999999999999999999999998886543  333332   2


Q ss_pred             ceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCee--EEecCCeEEEEEEEee----eCCC--eEE
Q psy11143        191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST--TYSTGSTSRITCLVEG----HPLP--QMT  262 (940)
Q Consensus       191 ~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~--~v~~G~~v~L~C~v~G----~P~p--~It  262 (940)
                      ..|.|.++..+|+|.|+|.|.|..|.......+.+...+.    .|...  ....+..+.|.|....    .|..  .+.
T Consensus       158 ~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~----~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~  233 (389)
T 2jll_A          158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS----SPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD  233 (389)
T ss_dssp             EEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC----CCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC----CCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEE
Confidence            3699999999999999999999999988887777753322    11111  2234578899997422    2322  577


Q ss_pred             EEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee-----ccCCeEEEcCCceeecCC
Q psy11143        263 WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING-----HRAPRLVVKPFDMRAPAG  337 (940)
Q Consensus       263 W~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~-----~~~P~i~~~p~~~~v~~G  337 (940)
                      |.+++.....  ..........+.|.++...+.|.|+|.|.|..|....+..+.+..     ..+|.+..     ....+
T Consensus       234 ~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~~-----~~~~~  306 (389)
T 2jll_A          234 VKEVASEIWK--IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHG-----QPSSG  306 (389)
T ss_dssp             EEETTCSCCE--EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEEE-----EEETT
T ss_pred             EEECCCcccE--EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCcccc-----ccCcC
Confidence            8877642210  111111234699999999999999999999998765544333321     22232221     22356


Q ss_pred             CeEEEEEeecC---cCCCeEE--EEeCCeeeccCCcEEEe-eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        338 SSVEIPCKPDG---EPLPRIS--WSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       338 ~~vtL~C~v~g---~P~p~i~--W~k~g~~i~~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      ..+.|.+....   .|.-.+.  |...+..-.. ....+. ....+.|.++.......|++.|.|..|....+ .+.+..
T Consensus       307 ~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s-~~~~~T  384 (389)
T 2jll_A          307 KSFKLSITKQDDGGAPILEYIVKYRSKDKEDQW-LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT-VYEFSM  384 (389)
T ss_dssp             TEEEEEECCCCCCSSCCCEEEEEEEC-----CC-BCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCE-EEEEEC
T ss_pred             CEEEEEEECCCCCCCcccEEEEEEEeCCCCcce-eEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCce-eeEecC
Confidence            78888887532   2223333  3221111000 011111 12357888898888888999999999976554 334443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=5.9e-27  Score=258.61  Aligned_cols=270  Identities=19%  Similarity=0.249  Sum_probs=185.8

Q ss_pred             cccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCC
Q psy11143        135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       135 ~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      ..++|.+...|. ..+.+|++++|.|.+.+. .+.+.|+|++..+.... ......+.|.|.+++.+|+|.|+|.|.|..
T Consensus        21 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~   97 (316)
T 3vh8_G           21 GQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF-HGRIFQESFNMSPVTTAHAGNYTCRGSHPH   97 (316)
T ss_dssp             ---CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH-HHCCBSSCEEECSCCGGGCEEEEEEEBCSS
T ss_pred             CCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee-cCCcceEEEEECCCCcccCeEEEEEEEcCC
Confidence            345678887776 578899999999999987 67899999988754321 111235689999999999999999998642


Q ss_pred             -----cceeeeeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEE---eecCeE
Q psy11143        215 -----GEDVAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY---EHDGFV  284 (940)
Q Consensus       215 -----g~~s~s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~---~~~g~s  284 (940)
                           +..+..+.|.|..  .+|.+...+... +.+|+.++|.|.+. .+.+.+.|++++..+........   ......
T Consensus        98 ~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  175 (316)
T 3vh8_G           98 SPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKAN  175 (316)
T ss_dssp             SSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEE
T ss_pred             CCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEE
Confidence                 2344556666654  245555544443 88999999999995 45679999999987753321111   113345


Q ss_pred             EEEeeeccCCCeEEEEEEEeCCCCc-----eeEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEe
Q psy11143        285 LVLNGVRESDAGVYNCVAQNSEGSA-----ESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK  358 (940)
Q Consensus       285 L~I~~v~~~DsG~YtC~A~N~~Gs~-----~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k  358 (940)
                      |.|.++..+|+|.|+|.|.|..|..     +....|.|... .+|.+...+. ..+.+|++++|.|.+. .|.+.+.|+|
T Consensus       176 L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~~~~W~k  253 (316)
T 3vh8_G          176 FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSSR-SSYDMYHLSR  253 (316)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTSCCEEEEEES-SCCSEEEEEE
T ss_pred             EEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCCcEEEEEECC-CCCcEEEEEE
Confidence            9999999999999999999998752     34455666542 4566766654 3678999999999997 5778999999


Q ss_pred             CCeeeccCCcEEEe----eeceEEEecCCCCCCeEEEEEEEeCCee-----EEEEEEEEEecCC
Q psy11143        359 DEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLLGE-----DVAEGYLTVTGEN  413 (940)
Q Consensus       359 ~g~~i~~~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A~N~~G~-----~~~s~~L~V~~~~  413 (940)
                      +|..+.........    ..++|.|.+++  |+|.|+|.|.|..+.     .+..+.|.|.++|
T Consensus       254 ~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          254 EGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             TTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             CCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            99866432211111    12579999999  999999999998763     3445667776653

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=5.9e-27  Score=258.64  Aligned_cols=263  Identities=14%  Similarity=0.215  Sum_probs=181.5

Q ss_pred             EEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEE
Q psy11143         36 GDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        36 ~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      ..++..+..+|.+...|. ..|.+|++++|.|.+.+. .+.+.|+|+|..+...  ......+..|.|.+++.+|+|.|+
T Consensus        15 ~~~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~   90 (316)
T 3vh8_G           15 KGSHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI--FHGRIFQESFNMSPVTTAHAGNYT   90 (316)
T ss_dssp             ---------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH--HHHCCBSSCEEECSCCGGGCEEEE
T ss_pred             cccccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee--ecCCcceEEEEECCCCcccCeEEE
Confidence            334556667899988888 578899999999999887 5789999999876431  111123455799999999999999


Q ss_pred             EEEEeCCC-----ceEEEEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEE--
Q psy11143        116 CVAQNSEG-----SAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--  187 (940)
Q Consensus       116 C~a~n~~g-----~~~~~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~--  187 (940)
                      |.|.+..+     .......|.|.... .|.+...+... +.+|++++|.|.+. .+.+.+.|++++..+........  
T Consensus        91 C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~  168 (316)
T 3vh8_G           91 CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIH  168 (316)
T ss_dssp             EEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEE
T ss_pred             EEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeec
Confidence            99986432     22335667776543 45666655544 88999999999995 45668999999887643221111  


Q ss_pred             --eeeceEEEeecccCCCceEEEEEEcCCcce-----eeeeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEeeeCC
Q psy11143        188 --HRTGSLRLYNIGPQDSGLYRCTASNLLGED-----VAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPL  258 (940)
Q Consensus       188 --~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~-----s~s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~  258 (940)
                        ...+.|.|.+++.+|+|.|+|.|.|..+..     +....|.|..  .+|.+...+. ..+.+|+.++|.|.+. .|.
T Consensus       169 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~  246 (316)
T 3vh8_G          169 DGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSSR-SSY  246 (316)
T ss_dssp             TTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTSCCEEEEEES-SCC
T ss_pred             CCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCCcEEEEEECC-CCC
Confidence              234579999999999999999999987742     4455566653  3455555443 3678999999999997 477


Q ss_pred             CeEEEEECCeecCCCCceEEeecC---eEEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        259 PQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       259 p~ItW~k~g~~l~~~~~~~~~~~g---~sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      +.+.|+|+|..+...........+   ..|.|.+++  |+|.|+|.|.|..+.
T Consensus       247 ~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          247 DMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             SEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             cEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            899999999877533221111122   459999999  999999999997664

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.94  E-value=4.1e-25  Score=241.47  Aligned_cols=258  Identities=22%  Similarity=0.346  Sum_probs=194.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC-CeEEEe-ec--eEEEEcccccCCCeEEEEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEH-DG--FVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~~-~g--s~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .+|.|...|....+.+|+.++|.|.+.|.|.+.|.|+|+|..+.... +..+.. .+  ..|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            47899999999999999999999999999999999999999887542 344432 22  368999999999999999999


Q ss_pred             eCCCceEEEEEEEEecccC---CeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEe---eeceE
Q psy11143        120 NSEGSAESVAMIRINGHRA---PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSL  193 (940)
Q Consensus       120 n~~g~~~~~~~L~V~~~~~---P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~---~~~sL  193 (940)
                      |..|.....+.|.|...+.   |.....+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+.   ....|
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l  162 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL  162 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEE
T ss_pred             cCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEE
Confidence            9988877777787764321   12222335677889999999999999999999999999888766665554   23579


Q ss_pred             EEee-cccCCCceEEEEEEcCCcceeeeeeeeecCCCC--eee-e---CCCeeEE------ecCCeEEEEEEEeeeCCCe
Q psy11143        194 RLYN-IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP--IFI-Q---RPVSTTY------STGSTSRITCLVEGHPLPQ  260 (940)
Q Consensus       194 ~I~~-v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p--~~~-~---~p~~~~v------~~G~~v~L~C~v~G~P~p~  260 (940)
                      .|.+ +..+|+|.|+|.|.|..|.....+.|.|...|.  ... .   ......+      ..|....+.|.+...+.+.
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~  242 (305)
T 2nzi_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTA  242 (305)
T ss_dssp             EETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTS
T ss_pred             EEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCC
Confidence            9999 999999999999999999988888888874332  111 0   0111111      1133344555555555556


Q ss_pred             EEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeE
Q psy11143        261 MTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV  312 (940)
Q Consensus       261 ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s  312 (940)
                      ..|.+.+...           ...|.|.++...+.|.|+|.|.|..|....+
T Consensus       243 ~~w~~~~~~~-----------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          243 ERWLRVGQAR-----------ETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             CCEEEEEEES-----------SSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             CccEECcccc-----------CceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence            6666554322           3459999999999999999999999877654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=238.17  Aligned_cols=253  Identities=21%  Similarity=0.301  Sum_probs=193.1

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccC-ceEEee--e--ceEEEeecccCCCceEEEEEE
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKIHR--T--GSLRLYNIGPQDSGLYRCTAS  211 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~-~~~~~~--~--~sL~I~~v~~~DsG~YtC~a~  211 (940)
                      .+|.+...+.+..+.+|++++|.|.+.|.|.+.++|++++..+.... ++....  +  ..|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            46788888999999999999999999999999999999998886542 333321  2  279999999999999999999


Q ss_pred             cCCcceeeeeeeeecCCCCeee-----eCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeec--CeE
Q psy11143        212 NLLGEDVAEGYLTVTGAPPIFI-----QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFV  284 (940)
Q Consensus       212 N~~g~~s~s~~L~V~~~~p~~~-----~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~--g~s  284 (940)
                      |..|..+..+.|.|. .+|.+.     ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+...  ...
T Consensus        83 n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (305)
T 2nzi_A           83 NQGGSVSGTASLEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (305)
T ss_dssp             ETTEEEEEEEEEEEC-EEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEE
T ss_pred             cCCCCccceEEEEEe-cCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceE
Confidence            999988888888887 333322     223567788999999999999999999999999999887776665432  345


Q ss_pred             EEEee-eccCCCeEEEEEEEeCCCCceeEEEEEEeecc-CCeEEEcCCceeecCCCeEEEEEe--------------ecC
Q psy11143        285 LVLNG-VRESDAGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCK--------------PDG  348 (940)
Q Consensus       285 L~I~~-v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~-~P~i~~~p~~~~v~~G~~vtL~C~--------------v~g  348 (940)
                      |.|.+ +...|.|.|+|.|.|..|....++.+.|.... +|....    .....+..+.|.|.              +..
T Consensus       162 l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~----~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~  237 (305)
T 2nzi_A          162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK----VSDVSRDSVNLTWTEPASDGGSKITNYIVEK  237 (305)
T ss_dssp             EEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEE----EESCCSSCEEEEEECCSCCSBSCEEEEEEEE
T ss_pred             EEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCce----eeeccCCEEEEEEcCCccCCCCceeEEEEEE
Confidence            99998 99999999999999999999888888886432 222111    11123445555554              444


Q ss_pred             cCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143        349 EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       349 ~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s  404 (940)
                      .|.+...|.+.+..          ...+|.|.++...+.|.|+|.|.|..|....+
T Consensus       238 ~~~~~~~w~~~~~~----------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          238 CATTAERWLRVGQA----------RETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             EETTSCCEEEEEEE----------SSSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             ecCCCCccEECccc----------cCceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence            44444445443221          14579999999999999999999999976543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.93  E-value=8.2e-24  Score=250.41  Aligned_cols=309  Identities=16%  Similarity=0.207  Sum_probs=199.2

Q ss_pred             CcccEEEECCCCCCCCeEEEEEEEcCCc-----------e--EEEEEEEEEeC----CCeEEe-CCCcEEEecCCeEEEE
Q psy11143          5 RSSTELVISGVQREHGGRYSCVAGNPAG-----------V--YRGDLHVTVNA----PPIFIQ-RPVSTTYSTGSTSRIT   66 (940)
Q Consensus         5 ~s~~tL~I~~v~~sDsG~Y~C~a~n~~g-----------~--~~~~v~l~V~~----pP~~~~-~p~~~~V~eGesv~L~   66 (940)
                      ++..+|+|.+++.+|+|.|+|.+.+..+           .  ....+.|.|..    +|.+.. .+......+|+.++|.
T Consensus        77 ~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~  156 (512)
T 1zvo_C           77 RNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLA  156 (512)
T ss_pred             CCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEE
Confidence            4468999999999999999999987642           1  11234566652    454442 2222212357899999


Q ss_pred             EEeecc-CCC-eEEEEECCEeecCC-CCeEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCceEEEE---------
Q psy11143         67 CLVEGH-PLP-QMTWFHDGNSLDSD-DHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVA---------  129 (940)
Q Consensus        67 C~v~g~-P~p-~V~W~kdg~~I~~~-~~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~---------  129 (940)
                      |.+.+. |.+ .|+|++++...... .......++     +.|.|.....+ .|.|+|.|.|..+......         
T Consensus       157 C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~  235 (512)
T 1zvo_C          157 CLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKA  235 (512)
T ss_pred             EEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCc
Confidence            999986 665 99999976432100 000111112     34788887777 9999999999988765543         


Q ss_pred             --EEEEecc--------------------------------------------------cCCeeE-ecCCceeecCCCcE
Q psy11143        130 --MIRINGH--------------------------------------------------RAPRLV-VKPFDMRAPAGSSV  156 (940)
Q Consensus       130 --~L~V~~~--------------------------------------------------~~P~~~-~~p~~~~v~~Ge~v  156 (940)
                        .+.|...                                                  .+|.+. ..+....+.+|+.+
T Consensus       236 ~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~  315 (512)
T 1zvo_C          236 QASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKA  315 (512)
T ss_pred             CCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCce
Confidence              2333211                                                  123333 33344456789999


Q ss_pred             EEEEEeCCCCC--CeEEEeeCCeeccccC---------ceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeee
Q psy11143        157 EIPCKPDGEPL--PRISWSKDEAEFVEDR---------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  225 (940)
Q Consensus       157 tL~C~v~g~P~--p~ItW~k~g~~i~~~~---------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V  225 (940)
                      +|.|.+.|.++  ..|+|+++|..+....         ...+...+.|.|..+..+|.|.|+|.|.|..+... ...+..
T Consensus       316 ~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~  394 (512)
T 1zvo_C          316 TFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALR  394 (512)
T ss_pred             EEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEe
Confidence            99999998533  3899999988754210         11122234699999999999999999999877543 222322


Q ss_pred             c-----CCCCeeeeCCCeeEEecCCeEE-EEEEEeeeCCC--eEEEEECCeecCCCCce----EEeecCe------EEEE
Q psy11143        226 T-----GAPPIFIQRPVSTTYSTGSTSR-ITCLVEGHPLP--QMTWFHDGNSLDSDDHV----TYEHDGF------VLVL  287 (940)
Q Consensus       226 ~-----~~~p~~~~~p~~~~v~~G~~v~-L~C~v~G~P~p--~ItW~k~g~~l~~~~~~----~~~~~g~------sL~I  287 (940)
                      .     ..+|.+...+...   .|+.+. |.|.+.|.+++  .|+|+|+|..+......    ....++.      .|.|
T Consensus       395 ~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v  471 (512)
T 1zvo_C          395 EPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRV  471 (512)
T ss_pred             ecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEE
Confidence            1     1345444333222   789999 99999996443  68999999998754211    1223342      3566


Q ss_pred             eeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        288 NGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .....+|.|.|+|.|.|............+.
T Consensus       472 ~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~  502 (512)
T 1zvo_C          472 PAPPSPQPATYTCVVSHEDSRTLLNASRSLE  502 (512)
T ss_pred             CchhcCCCCeEEEEEEecCCCCceEEEEEEE
Confidence            6666677999999999997765544444444

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.93  E-value=1.3e-23  Score=237.83  Aligned_cols=264  Identities=21%  Similarity=0.362  Sum_probs=200.6

Q ss_pred             CeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeC--Ceeccc-----cCceEEe---eeceEEEeecccCCCceEEE
Q psy11143        139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVE-----DRNHKIH---RTGSLRLYNIGPQDSGLYRC  208 (940)
Q Consensus       139 P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~--g~~i~~-----~~~~~~~---~~~sL~I~~v~~~DsG~YtC  208 (940)
                      |.+.. +.+..+.+|+.++|.|.+.|.|.+.|+|+++  +..+..     ..++.+.   ..+.|.|.+++.+|+|.|+|
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   80 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC   80 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEE
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEE
Confidence            44444 5677788999999999999999999999998  777754     3444443   24589999999999999999


Q ss_pred             EEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCC--ceEEeec--CeE
Q psy11143        209 TASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHD--GFV  284 (940)
Q Consensus       209 ~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~--~~~~~~~--g~s  284 (940)
                      .|.|..|..+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.+.++|+++|..+....  ++.+..+  ...
T Consensus        81 ~a~n~~g~~~~~~~l~V~-~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~  159 (389)
T 2jll_A           81 EAASRIGGHQKSMYLDIE-YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI  159 (389)
T ss_dssp             EEECSSCEEEEEEEEEEE-EEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEE
T ss_pred             EEEeCCCCcceEEEEEEE-eCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEE
Confidence            999999999889999998 56666666666678899999999999999999999999999987654  4444433  346


Q ss_pred             EEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeecc-CCeEEEcCCceeecCCCeEEEEEeec----CcCCC--eEEEE
Q psy11143        285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPD----GEPLP--RISWS  357 (940)
Q Consensus       285 L~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~-~P~i~~~p~~~~v~~G~~vtL~C~v~----g~P~p--~i~W~  357 (940)
                      |.|.++...|+|.|+|.|.|..|.......+.+.... +|....    .....+..+.|.|...    |.|..  .+.|.
T Consensus       160 L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~----~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~  235 (389)
T 2jll_A          160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVK----IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVK  235 (389)
T ss_dssp             EEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEE----EEEECSSCEEEEEECCSCCTTSCEEEEEEEEE
T ss_pred             EEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceE----EeeccCCEEEEEEeCCCCCCCcceEEEEEEEE
Confidence            9999999999999999999999998877777664322 221111    1223457889999742    23433  56788


Q ss_pred             eCCeeeccCCcEEEe---eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        358 KDEAEFVEDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       358 k~g~~i~~~~~~~i~---~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      +++....    ..+.   ...++.|.++...+.|.|+|.|.|..|....+..+.+...
T Consensus       236 ~~~~~~~----~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~  289 (389)
T 2jll_A          236 EVASEIW----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL  289 (389)
T ss_dssp             ETTCSCC----EEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred             ECCCccc----EEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEec
Confidence            7764211    1111   1247999999999999999999999998766655555543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.92  E-value=1e-24  Score=241.85  Aligned_cols=263  Identities=14%  Similarity=0.204  Sum_probs=175.9

Q ss_pred             CCeeEecCCceeecCC--CcEEEEEEeCCC-C-CCeEEEeeCCeeccccCce--E------EeeeceEEEeecccCCCce
Q psy11143        138 APRLVVKPFDMRAPAG--SSVEIPCKPDGE-P-LPRISWSKDEAEFVEDRNH--K------IHRTGSLRLYNIGPQDSGL  205 (940)
Q Consensus       138 ~P~~~~~p~~~~v~~G--e~vtL~C~v~g~-P-~p~ItW~k~g~~i~~~~~~--~------~~~~~sL~I~~v~~~DsG~  205 (940)
                      +|.+.+.+.......|  +++.|.|.+.+. | .+.|+|+++|..+......  .      ....+.|.|.++..+|+|.
T Consensus         7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~   86 (323)
T 2wqr_A            7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT   86 (323)
T ss_dssp             CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence            3444444333333344  699999999885 4 4699999999887643211  1      1122357788888889999


Q ss_pred             EEEEEEcCCcceeeeeeeee---cCCCCeeeeCCCeeEEecCCeEEEEEEEeee-CCC---eEEEEECC-eecCCCCceE
Q psy11143        206 YRCTASNLLGEDVAEGYLTV---TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP---QMTWFHDG-NSLDSDDHVT  277 (940)
Q Consensus       206 YtC~a~N~~g~~s~s~~L~V---~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~p---~ItW~k~g-~~l~~~~~~~  277 (940)
                      |+|.|.|..+.....+.+.+   ...++.+...+....+.+|+.++|.|.+.|. |.+   .|+|++++ ..+.......
T Consensus        87 Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~  166 (323)
T 2wqr_A           87 YTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKE  166 (323)
T ss_dssp             EEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEE
T ss_pred             EEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCC
Confidence            99999998776554433211   1122333444555567889999999999986 556   99999975 4443222111


Q ss_pred             E-eec-----CeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe--eccCCeEEEcCCceeecCCCeEEEEEeecCc
Q psy11143        278 Y-EHD-----GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE  349 (940)
Q Consensus       278 ~-~~~-----g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~--~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~  349 (940)
                      . ..+     ...|.|.++..+|+|.|+|.|.|..+.......+.+.  ...+|.+...+.......|+.++|.|.+.|.
T Consensus       167 ~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~  246 (323)
T 2wqr_A          167 EKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNF  246 (323)
T ss_dssp             EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeee
Confidence            1 111     2259999999999999999999987544333333222  2357776654433333349999999999984


Q ss_pred             -CCC-eEEEEeCCeeeccCCcE----------EEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        350 -PLP-RISWSKDEAEFVEDRNH----------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       350 -P~p-~i~W~k~g~~i~~~~~~----------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                       |.+ .|.|+|+|..+......          .....+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       247 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          247 MPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             BSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             eCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence             544 89999999987543211          0112347999999999999999999998876

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=3.2e-23  Score=210.60  Aligned_cols=183  Identities=28%  Similarity=0.480  Sum_probs=157.7

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCC--ceEE--eecCeEEEEeeeccCCCeEEEEEEE
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTY--EHDGFVLVLNGVRESDAGVYNCVAQ  303 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~--~~~~--~~~g~sL~I~~v~~~DsG~YtC~A~  303 (940)
                      .+|.+...+....+.+|+.++|.|.+.|.|.+.+.|+++|..+....  +..+  .....+|.|.++..+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            45677778888899999999999999999999999999999887553  3333  2333469999999999999999999


Q ss_pred             eCCCCceeEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEE
Q psy11143        304 NSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL  379 (940)
Q Consensus       304 N~~Gs~~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I  379 (940)
                      |..|.......+.|... .+|.+...+....+..|+.++|.|.+.|.|.|.+.|++++..+....++.+..++   +|.|
T Consensus        84 n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i  163 (194)
T 2a38_A           84 NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI  163 (194)
T ss_dssp             ETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEE
T ss_pred             cCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEE
Confidence            99998887777777642 5677777777888999999999999999999999999999999877777776655   7999


Q ss_pred             ecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       380 ~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      .++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       164 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          164 AEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            9999999999999999999999999998874

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.91  E-value=1.7e-24  Score=240.06  Aligned_cols=264  Identities=18%  Similarity=0.249  Sum_probs=172.1

Q ss_pred             CCeEEeCCCcEEEecC--CeEEEEEEeecc-C-CCeEEEEECCEeecCCCCe--EEEeec-----eEEEEcccccCCCeE
Q psy11143         45 PPIFIQRPVSTTYSTG--STSRITCLVEGH-P-LPQMTWFHDGNSLDSDDHV--TYEHDG-----FVLVLNGVRESDAGV  113 (940)
Q Consensus        45 pP~~~~~p~~~~V~eG--esv~L~C~v~g~-P-~p~V~W~kdg~~I~~~~~~--~~~~~g-----s~L~I~~v~~~DsG~  113 (940)
                      +|.+...+.......|  +.++|.|.+.+. | .+.|+|+|+|..+......  ....++     +.|.|.++..+|+|.
T Consensus         7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~   86 (323)
T 2wqr_A            7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT   86 (323)
T ss_dssp             CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence            4544443332222334  699999999885 4 4699999999988643211  111122     246788888889999


Q ss_pred             EEEEEEeCCCceEEEEEEEEe-cccCCee-EecCCceeecCCCcEEEEEEeCCC-CCC---eEEEeeCC-eeccccCc--
Q psy11143        114 YNCVAQNSEGSAESVAMIRIN-GHRAPRL-VVKPFDMRAPAGSSVEIPCKPDGE-PLP---RISWSKDE-AEFVEDRN--  184 (940)
Q Consensus       114 YtC~a~n~~g~~~~~~~L~V~-~~~~P~~-~~~p~~~~v~~Ge~vtL~C~v~g~-P~p---~ItW~k~g-~~i~~~~~--  184 (940)
                      |+|.|.|..+.....+.+.+. ....|.+ ...+....+.+|++++|.|.+.+. |.+   .|+|++++ ..+.....  
T Consensus        87 Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~  166 (323)
T 2wqr_A           87 YTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKE  166 (323)
T ss_dssp             EEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEE
T ss_pred             EEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCC
Confidence            999999987654433221111 1122333 444555568899999999999874 556   89999964 43322111  


Q ss_pred             -----eEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeee---cCCCCeeeeCCCeeEEecCCeEEEEEEEeee
Q psy11143        185 -----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV---TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH  256 (940)
Q Consensus       185 -----~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V---~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~  256 (940)
                           ......+.|.|.+++.+|+|.|+|.|.|..+.......+.+   ...+|.+...+.......|+.++|.|.+.|.
T Consensus       167 ~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~  246 (323)
T 2wqr_A          167 EKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNF  246 (323)
T ss_dssp             EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeee
Confidence                 11223457999999999999999999998644333333322   1134554433222222349999999999984


Q ss_pred             -CCC-eEEEEECCeecCCCCce----EEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        257 -PLP-QMTWFHDGNSLDSDDHV----TYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       257 -P~p-~ItW~k~g~~l~~~~~~----~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                       |.+ .|+|+|+|..+......    ....++     ..|.|..+..+|+|.|+|.|.|..+.
T Consensus       247 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          247 MPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             BSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             eCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence             443 89999999988653211    111122     34899999999999999999999876

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.91  E-value=8.9e-24  Score=236.48  Aligned_cols=259  Identities=16%  Similarity=0.284  Sum_probs=174.1

Q ss_pred             eCCCcEEEecCCeEEEEEEeecc--CCCeEEEEEC--CEeec-----------------CCCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHD--GNSLD-----------------SDDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kd--g~~I~-----------------~~~~~~~~~~----gs~L~I~  104 (940)
                      .+|..+.+.+|++++|.|.+.+.  +.+.|.|+|+  +..+.                 ...++.+..+    ...|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            34566789999999999999886  3679999997  33220                 1234444432    2468999


Q ss_pred             ccccCCCeEEEEEEEeCCCceEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CC-CeEEEeeCCeecc
Q psy11143        105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEAEFV  180 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~-p~ItW~k~g~~i~  180 (940)
                      +++.+|+|.|+|.+.|..+.....+.|.|...  .+|.+...+....+.+|+.++|.|.+.|. |. +.|+|++++..+.
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  164 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG  164 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTT
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCc
Confidence            99999999999999985543334566777632  23555554444567899999999999986 65 6999999887532


Q ss_pred             cc-------CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeee--e---------------------cCCCC
Q psy11143        181 ED-------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT--V---------------------TGAPP  230 (940)
Q Consensus       181 ~~-------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~--V---------------------~~~~p  230 (940)
                      ..       ........+.|.|.++..+| |.|+|.|.|..+.......+.  |                     ...+|
T Consensus       165 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P  243 (344)
T 1za6_B          165 VHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREP  243 (344)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCC
T ss_pred             eeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCC
Confidence            10       11112233479999998888 999999999887643332222  1                     12345


Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeee-C-CCeEEEEECCeecCCCCc--eEEeecCe-----EEEEeeeccCCCeEEEEE
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGH-P-LPQMTWFHDGNSLDSDDH--VTYEHDGF-----VLVLNGVRESDAGVYNCV  301 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~-P-~p~ItW~k~g~~l~~~~~--~~~~~~g~-----sL~I~~v~~~DsG~YtC~  301 (940)
                      .+...+.......|..++|.|.+.|. | .+.|+|+|+|..+.....  .....++.     .|.|.....+|.|.|+|.
T Consensus       244 ~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~  323 (344)
T 1za6_B          244 QVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCS  323 (344)
T ss_dssp             EEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEE
T ss_pred             EEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEE
Confidence            54433322223356679999999996 4 358999999988764322  12233332     255555556779999999


Q ss_pred             EEeCCCCc
Q psy11143        302 AQNSEGSA  309 (940)
Q Consensus       302 A~N~~Gs~  309 (940)
                      |.|.....
T Consensus       324 a~~~~l~~  331 (344)
T 1za6_B          324 VMHEALHN  331 (344)
T ss_dssp             EECTTSTT
T ss_pred             EEcCCCCC
Confidence            99987654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.91  E-value=7.2e-24  Score=237.24  Aligned_cols=257  Identities=17%  Similarity=0.268  Sum_probs=173.4

Q ss_pred             ecCCceeecCCCcEEEEEEeCCC--CCCeEEEeeC--Ceecc-----------------ccCceEEee-----eceEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGE--PLPRISWSKD--EAEFV-----------------EDRNHKIHR-----TGSLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~--P~p~ItW~k~--g~~i~-----------------~~~~~~~~~-----~~sL~I~  196 (940)
                      ..+....+.+|++++|.|.+.+.  +.+.|.|+|+  +..+.                 ...++.+..     ..+|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            34556789999999999999876  3678999986  33221                 123454443     2479999


Q ss_pred             ecccCCCceEEEEEEcCCcceeeeeeeeecC---CCCeeeeCCCeeEEecCCeEEEEEEEeee-CC-CeEEEEECCeecC
Q psy11143        197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTG---APPIFIQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLD  271 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~---~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~  271 (940)
                      +++.+|+|.|+|.+.|..+.......|.|..   .+|.+...+....+.+|+.++|.|.+.|. |. +.|+|++++..+.
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  164 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG  164 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTT
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCc
Confidence            9999999999999998655444556677763   23444433333446789999999999997 65 6999999987642


Q ss_pred             CCCc-eEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE----------------------eeccCC
Q psy11143        272 SDDH-VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI----------------------NGHRAP  323 (940)
Q Consensus       272 ~~~~-~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V----------------------~~~~~P  323 (940)
                      .... .....++     ..|.|..+..+| |.|+|.|.|..+.......+.+                      ....+|
T Consensus       165 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P  243 (344)
T 1za6_B          165 VHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREP  243 (344)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCC
T ss_pred             eeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCC
Confidence            1100 0011111     248898888878 9999999999887544333321                      123567


Q ss_pred             eEEEcCCceeecCCCeEEEEEeecCc-C-CCeEEEEeCCeeeccCCc--EEEeee------ceEEEecCCCCCCeEEEEE
Q psy11143        324 RLVVKPFDMRAPAGSSVEIPCKPDGE-P-LPRISWSKDEAEFVEDRN--HKIHRT------GSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       324 ~i~~~p~~~~v~~G~~vtL~C~v~g~-P-~p~i~W~k~g~~i~~~~~--~~i~~~------~sL~I~~v~~~D~G~YtC~  393 (940)
                      .+...+.......|..++|.|.+.|. | .+.|+|+|+|..+.....  .....+      +.|.|.....+|.|.|+|.
T Consensus       244 ~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~  323 (344)
T 1za6_B          244 QVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCS  323 (344)
T ss_dssp             EEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEE
T ss_pred             EEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEE
Confidence            76655433323346679999999995 4 359999999987653211  111222      3466666666779999999


Q ss_pred             EEeCCee
Q psy11143        394 ASNLLGE  400 (940)
Q Consensus       394 A~N~~G~  400 (940)
                      |.|....
T Consensus       324 a~~~~l~  330 (344)
T 1za6_B          324 VMHEALH  330 (344)
T ss_dssp             EECTTST
T ss_pred             EEcCCCC
Confidence            9997653

>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*

Probab=99.91  E-value=4.3e-26  Score=208.52  Aligned_cols=55  Identities=42%  Similarity=0.564  Sum_probs=52.2

Q ss_pred             cccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCC
Q psy11143        664 CFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGN  718 (940)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (940)
                      |++.+|||+||+|||++||.||++.|+|+|+|||.|+||+++|.||+..+.++|.
T Consensus         2 ~~~~~yRt~DG~cNNl~~P~~G~a~t~f~R~lpp~Y~DG~~~p~~~~~~~~~~g~   56 (104)
T 1d2v_A            2 PEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGF   56 (104)
T ss_dssp             CSCCSSCCSSCTTSSSSSTTTTCSSEECBCSSCCCCTTSSSCCTTSSTTCCBTTB
T ss_pred             CCCCCccCCCCCccCCCCCccCcCCCccccccCcccccCcccccccccccccCCC
Confidence            6899999999999999999999999999999999999999999999998877764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.90  E-value=4.2e-23  Score=209.38  Aligned_cols=184  Identities=27%  Similarity=0.532  Sum_probs=158.1

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCC-CCceEEeecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~-~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .+|.+...+....+.+|+++.|.|.+.|.|.+.+.|++++..+.. ..++.+..++.+|.|.++..+|+|.|+|.+.|..
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV   85 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCC
Confidence            345666677778899999999999999999999999999998865 4566777777789999999999999999999998


Q ss_pred             CCc-eeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCC
Q psy11143        307 GSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ  385 (940)
Q Consensus       307 Gs~-~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~  385 (940)
                      |.. .....+.|.  .+|.+...+....+..|+.++|.|.+.|.|.|.+.|++++..+....++.+..+++|.|.++..+
T Consensus        86 ~~~~~~~~~l~v~--~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  163 (192)
T 2iep_A           86 GGAVESCGALQVK--MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE  163 (192)
T ss_dssp             SCCEEEEEEEEEE--EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGG
T ss_pred             CceeEeEEEEEEE--eCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChh
Confidence            874 444555554  57888888888889999999999999999999999999999998888888877889999999999


Q ss_pred             CCeEEEEEEEeCCeeEE-EEEEEEEecCC
Q psy11143        386 DSGLYRCTASNLLGEDV-AEGYLTVTGEN  413 (940)
Q Consensus       386 D~G~YtC~A~N~~G~~~-~s~~L~V~~~~  413 (940)
                      |+|.|+|.|.|..|... ..+.|.|..+|
T Consensus       164 d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          164 DAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             hCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999999999999884 46888888753

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.90  E-value=2.2e-22  Score=208.44  Aligned_cols=187  Identities=26%  Similarity=0.483  Sum_probs=156.6

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecC-CCCceEEee--cC-eEEEEeeecc-CCCeEEEEEE
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEH--DG-FVLVLNGVRE-SDAGVYNCVA  302 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~-~~~~~~~~~--~g-~sL~I~~v~~-~DsG~YtC~A  302 (940)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+. ...++.+..  ++ .+|.|.++.. +|+|.|+|.|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            57888888999999999999999999999999999999999987 444554432  23 4699999999 9999999999


Q ss_pred             EeCCCC-ceeEEEEEEeec-----cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeece
Q psy11143        303 QNSEGS-AESVAMIRINGH-----RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS  376 (940)
Q Consensus       303 ~N~~Gs-~~~s~~l~V~~~-----~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~s  376 (940)
                      .|..|. ....+.|.|...     .+|.+...+....+..|+.++|.|.+.|.|.|.|.|++++..+..........+++
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~  164 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF  164 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTE
T ss_pred             EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCe
Confidence            999998 667777777642     12788888888889999999999999999999999999999887643333345679


Q ss_pred             EEEecCCCCCCeEEEEEEEeCCeeEEEE-EEEEEecCCC
Q psy11143        377 LRLYNIGPQDSGLYRCTASNLLGEDVAE-GYLTVTGENS  414 (940)
Q Consensus       377 L~I~~v~~~D~G~YtC~A~N~~G~~~~s-~~L~V~~~~~  414 (940)
                      |.|.++..+|+|.|+|.|.|..|..... +.|.|+....
T Consensus       165 L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             EEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence            9999999999999999999999999875 8999998643

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.89  E-value=4.2e-22  Score=202.31  Aligned_cols=182  Identities=23%  Similarity=0.426  Sum_probs=156.1

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCe--EEEEeeeccCCCeEEEEEEEeC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCVAQNS  305 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~  305 (940)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+..++.  +|.|.++..+|+|.|+|.+.|.
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   85 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNE   85 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECS
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECC
Confidence            56777788888999999999999999999999999999999998887777766653  5999999999999999999999


Q ss_pred             CCCceeEEEEEEeeccCCeEEE---cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeee---ceEEE
Q psy11143        306 EGSAESVAMIRINGHRAPRLVV---KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRL  379 (940)
Q Consensus       306 ~Gs~~~s~~l~V~~~~~P~i~~---~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~---~sL~I  379 (940)
                      .|.......+.|..  +|.+..   .+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+...   ++|.|
T Consensus        86 ~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i  163 (197)
T 3lcy_A           86 VGEVETSSKLLLQA--TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVM  163 (197)
T ss_dssp             SCEEEEEEEEEEEE--EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEE
T ss_pred             CCceeEEEEEEEEc--CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEE
Confidence            99888777777753  343332   12345678999999999999999999999999999987777776654   57999


Q ss_pred             ecCCC-CCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        380 YNIGP-QDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       380 ~~v~~-~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      .++.. +|+|.|+|.|.|..|....++.|.|.+
T Consensus       164 ~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          164 KNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            99985 899999999999999999999999875

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.89  E-value=2.1e-22  Score=204.53  Aligned_cols=183  Identities=28%  Similarity=0.480  Sum_probs=155.6

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEE--eeceEEEEcccccCCCeEEEEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYE--HDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .+|.+...|....+.+|+.++|.|.+.+.|.+.|.|+|+|..+....  +.++.  .....|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            36788888899999999999999999999999999999999887553  33433  334568999999999999999999


Q ss_pred             eCCCceEEEEEEEEecc-cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeec---eEEE
Q psy11143        120 NSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL  195 (940)
Q Consensus       120 n~~g~~~~~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~---sL~I  195 (940)
                      |..|.......|.|... .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.....+   +|.|
T Consensus        84 n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i  163 (194)
T 2a38_A           84 NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI  163 (194)
T ss_dssp             ETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEE
T ss_pred             cCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEE
Confidence            99888777777888753 3456677777888999999999999999999999999999998877666665544   6999


Q ss_pred             eecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       196 ~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      .+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       164 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          164 AEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            9999999999999999999998888887763

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.89  E-value=9.7e-22  Score=203.79  Aligned_cols=185  Identities=26%  Similarity=0.477  Sum_probs=151.8

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEee---cCeEEEEeee-ccCCCeEEEEEEE
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH---DGFVLVLNGV-RESDAGVYNCVAQ  303 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~---~g~sL~I~~v-~~~DsG~YtC~A~  303 (940)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.|.|++++..+..........   .+..|.|.++ ..+|+|.|+|.|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~   84 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS   84 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence            46777788888999999999999999999999999999999987654333321   3456999999 4999999999999


Q ss_pred             eCCCCceeEEEEEEeec-----cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC---CcEEEee--
Q psy11143        304 NSEGSAESVAMIRINGH-----RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED---RNHKIHR--  373 (940)
Q Consensus       304 N~~Gs~~~s~~l~V~~~-----~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~---~~~~i~~--  373 (940)
                      |..|.....+.|.|...     ..|.+...+....+..|++++|.|.+.|.|.|.|.|++++..+...   .++....  
T Consensus        85 n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~  164 (212)
T 2yd6_A           85 NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE  164 (212)
T ss_dssp             ETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEET
T ss_pred             cCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecC
Confidence            99998877888888642     2377888888888999999999999999999999999999988653   3444433  


Q ss_pred             -eceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEEEEecC
Q psy11143        374 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGE  412 (940)
Q Consensus       374 -~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~~  412 (940)
                       .+.|.|.++..+|+|.|+|.|.|..|...+ .+.|.|..+
T Consensus       165 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~  205 (212)
T 2yd6_A          165 SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT  205 (212)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             CeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEec
Confidence             368999999999999999999999998765 577888765

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.89  E-value=7.5e-22  Score=204.43  Aligned_cols=184  Identities=27%  Similarity=0.489  Sum_probs=155.5

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeec-CCCCeEEE--eec-eEEEEccccc-CCCeEEEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYE--HDG-FVLVLNGVRE-SDAGVYNCVA  118 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~-~~~~~~~~--~~g-s~L~I~~v~~-~DsG~YtC~a  118 (940)
                      .||.+...|....+.+|+.++|.|.+.|.|.+.|.|+++|..+. ...+..+.  .++ ..|.|.+++. +|+|.|+|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            58999999999999999999999999999999999999999986 34444444  223 5689999999 9999999999


Q ss_pred             EeCCCc-eEEEEEEEEeccc-----CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeece
Q psy11143        119 QNSEGS-AESVAMIRINGHR-----APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS  192 (940)
Q Consensus       119 ~n~~g~-~~~~~~L~V~~~~-----~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~s  192 (940)
                      .|..|. ....+.|.|....     .|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..........++.
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~  164 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF  164 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTE
T ss_pred             EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCe
Confidence            999988 5667788887542     2677777888889999999999999999999999999999887644433445679


Q ss_pred             EEEeecccCCCceEEEEEEcCCcceeee-eeeeecC
Q psy11143        193 LRLYNIGPQDSGLYRCTASNLLGEDVAE-GYLTVTG  227 (940)
Q Consensus       193 L~I~~v~~~DsG~YtC~a~N~~g~~s~s-~~L~V~~  227 (940)
                      |.|.+++.+|+|.|+|.|.|..|..... +.|.|..
T Consensus       165 L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            9999999999999999999999988664 7888874

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.89  E-value=5.8e-22  Score=201.98  Aligned_cols=182  Identities=25%  Similarity=0.407  Sum_probs=151.6

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCC-CceEEee-cC--eEEEEeeeccCCCeEEEEEEE
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEH-DG--FVLVLNGVRESDAGVYNCVAQ  303 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~-~~~~~~~-~g--~sL~I~~v~~~DsG~YtC~A~  303 (940)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.. .+  ..|.|.++..+|+|.|+|.|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            4678888888899999999999999999999999999999988754 3444432 22  269999999999999999999


Q ss_pred             eCCCCceeEEEEEEeeccCCeEEE-----cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---ec
Q psy11143        304 NSEGSAESVAMIRINGHRAPRLVV-----KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TG  375 (940)
Q Consensus       304 N~~Gs~~~s~~l~V~~~~~P~i~~-----~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~  375 (940)
                      |..|.....+.|.|..  +|.+..     .+....+.+|+.++|.|.+.|.|.|.+.|++++..+....++.+..   .+
T Consensus        83 n~~g~~~~~~~l~V~~--~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~  160 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEV--PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT  160 (197)
T ss_dssp             ETTEEEEEEEEEEEEE--EEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEE
T ss_pred             ECCCceeEEEEEEEcC--CCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCce
Confidence            9998887777777753  343322     2234578899999999999999999999999999988777766643   45


Q ss_pred             eEEEec-CCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        376 SLRLYN-IGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       376 sL~I~~-v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      +|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       161 ~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            899999 999999999999999999999999998863

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.89  E-value=7.6e-22  Score=199.25  Aligned_cols=182  Identities=22%  Similarity=0.429  Sum_probs=147.2

Q ss_pred             CCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCC--CCceEEeecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~--~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..++....++. |.|.++..+|+|.|+|.+.|..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-LQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSC-EEETTCCGGGCEEEEEEEEETT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCC-EEEeeCCHhHCcEEEEEEEEcC
Confidence            46677788889999999999999999999999999999988763  34555555554 9999999999999999999998


Q ss_pred             CCceeEEEEEEeeccCCeEEEcCC--ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee-eceEEEecCC
Q psy11143        307 GSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIG  383 (940)
Q Consensus       307 Gs~~~s~~l~V~~~~~P~i~~~p~--~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~-~~sL~I~~v~  383 (940)
                      +.......+.+.+..+|.+...+.  ...+.+|+.++|.|.+.|.|.|.+.|+++|..+....++.+.. .++|.|.++.
T Consensus        81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~  160 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII  160 (189)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCC
T ss_pred             CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCC
Confidence            766544445555556677665544  3567889999999999999999999999999988777666544 4589999999


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        384 PQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       384 ~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      .+|+|.|+|.|.|..|....++.|.|..
T Consensus       161 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          161 NSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            9999999999999999999999998863

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.89  E-value=2.6e-21  Score=196.52  Aligned_cols=175  Identities=21%  Similarity=0.339  Sum_probs=146.1

Q ss_pred             CCeeeeCCCeeEEec-CCeEEEEEEEeeeCC--CeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeC
Q psy11143        229 PPIFIQRPVSTTYST-GSTSRITCLVEGHPL--PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  305 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~-G~~v~L~C~v~G~P~--p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~  305 (940)
                      +|.+.. +....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+.......   .+..|.|.++..+|+|.|+|.|.|.
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~   78 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA---SNMEYRINKPRAEDSGEYHCVYHFV   78 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC---SEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe---ccEEEEEecCCcccCEEEEEEEEeC
Confidence            455555 44455666 999999999999887  7999999999987654432   3356999999999999999999999


Q ss_pred             CCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEe--CCeeec---cCCcEEEeee---ceE
Q psy11143        306 EGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK--DEAEFV---EDRNHKIHRT---GSL  377 (940)
Q Consensus       306 ~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k--~g~~i~---~~~~~~i~~~---~sL  377 (940)
                       +.....+.|.|.  .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++  ++..+.   ...++.+...   ++|
T Consensus        79 -~~~~~~~~l~V~--~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L  155 (190)
T 2wv3_A           79 -SAPKANATIEVK--AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL  155 (190)
T ss_dssp             -TEEEEEEEEEEE--CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEE
T ss_pred             -CcccccEEEEEe--cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEE
Confidence             777777777665  57888888888889999999999999999999999999  777664   4456665543   379


Q ss_pred             EEecCC-CCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        378 RLYNIG-PQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       378 ~I~~v~-~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      .|.++. .+|+|.|+|.|.|..|....++.|.|+
T Consensus       156 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          156 NIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            999999 799999999999999999999999886

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.88  E-value=2.4e-22  Score=203.68  Aligned_cols=183  Identities=27%  Similarity=0.547  Sum_probs=155.6

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC-CCCeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~-~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +..+|.+...+..+.+.+|+.++|.|.+.+.|.+.|.|++++..+.. ..+..+..++..|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred             cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence            34567788888889999999999999999999999999999998865 44566666777789999999999999999999


Q ss_pred             CCCce-EEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecc
Q psy11143        121 SEGSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG  199 (940)
Q Consensus       121 ~~g~~-~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~  199 (940)
                      ..|.. .....+.|..  .|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.....++.|.|.+++
T Consensus        84 ~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~  161 (192)
T 2iep_A           84 GVGGAVESCGALQVKM--KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQ  161 (192)
T ss_dssp             SSSCCEEEEEEEEEEE--EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCC
T ss_pred             CCCceeEeEEEEEEEe--CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCC
Confidence            88874 3456666654  45677777788899999999999999999999999999999887777777777889999999


Q ss_pred             cCCCceEEEEEEcCCcce-eeeeeeeec
Q psy11143        200 PQDSGLYRCTASNLLGED-VAEGYLTVT  226 (940)
Q Consensus       200 ~~DsG~YtC~a~N~~g~~-s~s~~L~V~  226 (940)
                      .+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       162 ~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          162 KEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             hhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            999999999999999887 445777776

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.88  E-value=1.6e-21  Score=202.09  Aligned_cols=184  Identities=26%  Similarity=0.471  Sum_probs=150.2

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE---eeceEEEEccc-ccCCCeEEEEEE
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE---HDGFVLVLNGV-RESDAGVYNCVA  118 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~---~~gs~L~I~~v-~~~DsG~YtC~a  118 (940)
                      ..+|.|...|.+..+.+|+.+.|.|.+.|.|.+.|.|+|++..+.........   ..+..|.|.++ +.+|+|.|+|.+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            45788999999999999999999999999999999999999998754433322   23456899999 599999999999


Q ss_pred             EeCCCceEEEEEEEEeccc-----CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeecccc---CceEEee-
Q psy11143        119 QNSEGSAESVAMIRINGHR-----APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED---RNHKIHR-  189 (940)
Q Consensus       119 ~n~~g~~~~~~~L~V~~~~-----~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~---~~~~~~~-  189 (940)
                      .|..|.....+.|.|....     .|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...   .+..... 
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~  163 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS  163 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEE
T ss_pred             EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEec
Confidence            9999987778888887532     267777778888999999999999999999999999999888653   2333332 


Q ss_pred             --eceEEEeecccCCCceEEEEEEcCCccee-eeeeeeec
Q psy11143        190 --TGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVT  226 (940)
Q Consensus       190 --~~sL~I~~v~~~DsG~YtC~a~N~~g~~s-~s~~L~V~  226 (940)
                        .+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       164 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence              36899999999999999999999999864 45666666

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=199.13  Aligned_cols=182  Identities=22%  Similarity=0.409  Sum_probs=153.7

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeece--EEEEcccccCCCeEEEEEEEe
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs--~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+|++..+.......+..++.  .|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            457888899999999999999999999999999999999999998777777665443  689999999999999999999


Q ss_pred             CCCceEEEEEEEEecccCCeeE---ecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeee---ceEE
Q psy11143        121 SEGSAESVAMIRINGHRAPRLV---VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR  194 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~~~~P~~~---~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~---~sL~  194 (940)
                      ..+.......+.|...+  .+.   ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+......   ..|.
T Consensus        85 ~~~~~~~~~~l~v~~~p--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~  162 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATP--QFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLV  162 (197)
T ss_dssp             SSCEEEEEEEEEEEEEE--EECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEE
T ss_pred             CCCceeEEEEEEEEcCC--CCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEE
Confidence            99888777777776532  222   123455778999999999999999999999999999887766665544   5799


Q ss_pred             Eeeccc-CCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        195 LYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       195 I~~v~~-~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      |.++.. +|+|.|+|.|.|..|..+..+.|.|.
T Consensus       163 i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          163 MKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             ESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            999985 89999999999999999888888876

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.88  E-value=8.5e-22  Score=202.72  Aligned_cols=194  Identities=28%  Similarity=0.527  Sum_probs=149.6

Q ss_pred             eeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCc-----eEEeecCeE----EEEeeeccC
Q psy11143        223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-----VTYEHDGFV----LVLNGVRES  293 (940)
Q Consensus       223 L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~-----~~~~~~g~s----L~I~~v~~~  293 (940)
                      |.+...+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....     .....++..    |.|.++...
T Consensus         3 l~~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   82 (212)
T 2v9r_A            3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP   82 (212)
T ss_dssp             ---CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCC
T ss_pred             cCcccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcc
Confidence            44555678888888889999999999999999999999999999998864421     222233331    344567899


Q ss_pred             CCeEEEEEEEeCCCCc-eeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeeccCCcEEE
Q psy11143        294 DAGVYNCVAQNSEGSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKI  371 (940)
Q Consensus       294 DsG~YtC~A~N~~Gs~-~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~~~~~~i  371 (940)
                      |+|.|+|.|.|..|.. ...+.+.|.. .+|.+...+....+..|+.++|.|.+ .+.|.|.|.|++++..+........
T Consensus        83 d~G~Y~C~~~n~~g~~~~~~~~l~V~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~  161 (212)
T 2v9r_A           83 DEGVYVCVARNYLGEAVSHDASLEVAI-LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT  161 (212)
T ss_dssp             SCEEEEEEEEETTEEEECCCEEEEECE-ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEE
T ss_pred             cCeEEEEEEECCCCceeecceEEEEEe-ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEE
Confidence            9999999999998765 3456666654 34555566677789999999999998 8999999999999999876554444


Q ss_pred             eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEE-EEEEEecCCCCCC
Q psy11143        372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE-GYLTVTGENSVEP  417 (940)
Q Consensus       372 ~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s-~~L~V~~~~~~~~  417 (940)
                      ..+++|.|.++..+|+|.|+|.|.|..|..... +.|.|..+|....
T Consensus       162 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~  208 (212)
T 2v9r_A          162 IRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVK  208 (212)
T ss_dssp             EETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred             ccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhh
Confidence            567799999999999999999999999987664 8999998776443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.88  E-value=2.7e-21  Score=197.09  Aligned_cols=175  Identities=22%  Similarity=0.422  Sum_probs=146.9

Q ss_pred             CCeeeeCCCeeEEecCCeEEEEEEEe-eeCCCeEEEEECCeecCCCC--ceEEeec---------CeEEEEeeeccCCCe
Q psy11143        229 PPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDD--HVTYEHD---------GFVLVLNGVRESDAG  296 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~G~~v~L~C~v~-G~P~p~ItW~k~g~~l~~~~--~~~~~~~---------g~sL~I~~v~~~DsG  296 (940)
                      +|.+...|....+.+|+++.|.|.+. |.|.+.+.|+++|..+....  +..+...         ..+|.|.++..+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            56778888999999999999999999 99999999999999988663  2333222         246999999999999


Q ss_pred             EEEEEEEeCCCCceeE-EEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeee
Q psy11143        297 VYNCVAQNSEGSAESV-AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRT  374 (940)
Q Consensus       297 ~YtC~A~N~~Gs~~~s-~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~  374 (940)
                      .|+|.|.|..|..... +.|.|  ..+|.+...+....+.+|+.++|.|.+.|.|.| .|.|++++..+......  ...
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V--~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--~~~  157 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGL--EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--GPQ  157 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE--CCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--SCC
T ss_pred             EEEEEEEeCCCceecccEEEEE--ecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--CCC
Confidence            9999999987764332 55555  467889888888899999999999999999999 99999999988655443  456


Q ss_pred             ceEEEecCCCCCCeEEEEEEEeCCeeEE-EEEEEEE
Q psy11143        375 GSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTV  409 (940)
Q Consensus       375 ~sL~I~~v~~~D~G~YtC~A~N~~G~~~-~s~~L~V  409 (940)
                      ++|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       158 ~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          158 RSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            689999987  78999999999999986 6888988

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=204.13  Aligned_cols=172  Identities=17%  Similarity=0.284  Sum_probs=139.5

Q ss_pred             CCeeEEecCCeEEEEEEEee-eCCCeEEEEECCeecCCCCceEEeecC----eEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        236 PVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~~~~~g----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      +.+..+.+|+.+.|.|.+.+ .|.|.|+|+|||.++..+.++.+..++    .+|.|.++..+|+|.|+|.|.|  |...
T Consensus         9 ~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~   86 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKAT   86 (207)
T ss_dssp             EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEE
T ss_pred             CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeE
Confidence            34678899999999999865 799999999999999887776665443    2599999999999999999999  5554


Q ss_pred             eEEEEEEee-------------------ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCCeEEEEeCCeeeccCCcEE
Q psy11143        311 SVAMIRING-------------------HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHK  370 (940)
Q Consensus       311 ~s~~l~V~~-------------------~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~g~~i~~~~~~~  370 (940)
                      ....+.+..                   ..+|.+...+ ...+.+|++++|.|.+.|. |.|.|+|+|+|..+..+.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~  165 (207)
T 3rbs_A           87 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD  165 (207)
T ss_dssp             EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC
T ss_pred             EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE
Confidence            444433210                   1267777655 4788999999999999999 999999999999997665543


Q ss_pred             Ee-eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        371 IH-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       371 i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      .. ...+|.|.++..+|+|.|+|.|.|..|...+++.|+++
T Consensus       166 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          166 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            32 23479999999999999999999999999999988654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.88  E-value=1.7e-21  Score=198.43  Aligned_cols=183  Identities=26%  Similarity=0.410  Sum_probs=150.5

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC-CCeEEEe-ec--eEEEEcccccCCCeEEEEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEH-DG--FVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~-~~~~~~~-~g--s~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .+|.+...|....+.+|+.++|.|.+.+.|.+.|.|+|++..+... .+.++.. .+  ..|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            4789999999999999999999999999999999999999988754 3444432 22  268999999999999999999


Q ss_pred             eCCCceEEEEEEEEecccC---CeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEe---eeceE
Q psy11143        120 NSEGSAESVAMIRINGHRA---PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSL  193 (940)
Q Consensus       120 n~~g~~~~~~~L~V~~~~~---P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~---~~~sL  193 (940)
                      |..|.....+.|.|...+.   |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+.   ..+.|
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L  162 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL  162 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEE
T ss_pred             ECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEE
Confidence            9988877777777765321   22222334567889999999999999999999999999988766666553   23579


Q ss_pred             EEee-cccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        194 RLYN-IGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       194 ~I~~-v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      .|.+ ++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             ECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9999 99999999999999999998888888775

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=2.9e-21  Score=194.40  Aligned_cols=174  Identities=24%  Similarity=0.464  Sum_probs=142.5

Q ss_pred             CCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecC----eEEEEeeeccCCCeEEEEEEEe
Q psy11143        229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLVLNGVRESDAGVYNCVAQN  304 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g----~sL~I~~v~~~DsG~YtC~A~N  304 (940)
                      +|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+..+...+    ..|.|.++..+|+|.|+|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            345666778889999999999999999999999999999999877665554433    4699999999999999999999


Q ss_pred             CCCCc-eeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecC
Q psy11143        305 SEGSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNI  382 (940)
Q Consensus       305 ~~Gs~-~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v  382 (940)
                      ..+.. ...+.|.|.  .+|.+...+....+.+|+.++|.|.+.|.|.| .|.|++++..+.....    ...+|.|.++
T Consensus        82 ~~~~~~~~~~~l~V~--~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~----~~~~L~i~~~  155 (182)
T 1rhf_A           82 GGETEISQPVWLTVE--GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP----SPSVLNVTGV  155 (182)
T ss_dssp             CTTCEECCCEEEEEE--CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE----SSEEEEECCC
T ss_pred             CCCcEEEEEEEEEEe--cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC----CceEEEEecc
Confidence            87653 345556665  68889888888899999999999999999999 9999999988754322    4568999988


Q ss_pred             CCCCCeEEEEEEEeCCeeEEE-EEEEEEe
Q psy11143        383 GPQDSGLYRCTASNLLGEDVA-EGYLTVT  410 (940)
Q Consensus       383 ~~~D~G~YtC~A~N~~G~~~~-s~~L~V~  410 (940)
                        +|+|.|+|.|.|..|.... ++.|.|+
T Consensus       156 --~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          156 --TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             --SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             --ccCeEEEEEEECCCCCcccceEEEEeC
Confidence              5899999999999998864 7788774

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.87  E-value=5.2e-21  Score=193.91  Aligned_cols=181  Identities=21%  Similarity=0.376  Sum_probs=147.1

Q ss_pred             CCeeeeCCCeeEEecCCeEEEEEEEeeeC-CCeEEEEE-CCeecC-CCCceEEe---ecCeEEEEeeeccCCCeEEEEEE
Q psy11143        229 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFH-DGNSLD-SDDHVTYE---HDGFVLVLNGVRESDAGVYNCVA  302 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~G~~v~L~C~v~G~P-~p~ItW~k-~g~~l~-~~~~~~~~---~~g~sL~I~~v~~~DsG~YtC~A  302 (940)
                      ++.+...|....+.+|+.+.|.|.+.+.| .+.+.|++ +|..+. ...++.+.   .....|.|.++..+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            34566677888899999999999999987 78999999 888776 34444443   23356999999999999999999


Q ss_pred             EeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc--CCcEEEeeeceEEEe
Q psy11143        303 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIHRTGSLRLY  380 (940)
Q Consensus       303 ~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~--~~~~~i~~~~sL~I~  380 (940)
                      .|..+. ..+..+.+.+..+|.+...+....+.+|++++|.|.+.|.|.|.|.|++++..+..  ..++.+..+++|.|.
T Consensus        82 ~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (191)
T 1epf_A           82 TAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR  160 (191)
T ss_dssp             EETTTE-EEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEET
T ss_pred             EcCCCc-ceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEEC
Confidence            999853 23344445545788888888888999999999999999999999999999998753  346666677799999


Q ss_pred             cCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        381 NIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       381 ~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      ++..+|+|.|+|.|.|..|.......+.|.
T Consensus       161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          161 GIKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             TCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             CCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            999999999999999999866666666553

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.87  E-value=2e-21  Score=201.39  Aligned_cols=189  Identities=29%  Similarity=0.534  Sum_probs=150.1

Q ss_pred             eeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCC--ceEE-eecCeE---EEEeeeccCCCe
Q psy11143        223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTY-EHDGFV---LVLNGVRESDAG  296 (940)
Q Consensus       223 L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~--~~~~-~~~g~s---L~I~~v~~~DsG  296 (940)
                      +.+...+|.+...+....+.+|+.+.|.|.+.|.|.+.|.|+++|..+....  ...+ ..++..   |.|.+++.+|+|
T Consensus         3 ~~~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   82 (217)
T 2vr9_A            3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGG   82 (217)
T ss_dssp             ---CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCE
T ss_pred             cccccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCc
Confidence            3445578888888989999999999999999999999999999999887542  1122 223332   267889999999


Q ss_pred             EEEEEEEeCCCCce-eEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeec--------cC
Q psy11143        297 VYNCVAQNSEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFV--------ED  366 (940)
Q Consensus       297 ~YtC~A~N~~Gs~~-~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~--------~~  366 (940)
                      .|+|.+.|..|... ....+.|.. .+|.+...+....+.+|+.++|.|.+ .|.|.|.|.|++++..+.        ..
T Consensus        83 ~Y~C~~~n~~g~~~~~~~~l~v~~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~  161 (217)
T 2vr9_A           83 EYWCVAKNRVGQAVSRHASLQIAV-LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS  161 (217)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECE-ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CC
T ss_pred             eEEEEEecCCCccccccceEEEEE-eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccC
Confidence            99999999988663 345666654 35556666777889999999999999 899999999999999886        34


Q ss_pred             CcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        367 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       367 ~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      .++.+...++|.|.++..+|+|.|+|.|.|..|....+..+.+...
T Consensus       162 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~  207 (217)
T 2vr9_A          162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV  207 (217)
T ss_dssp             CSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             CcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence            4555566779999999999999999999999999888766665543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.87  E-value=4.6e-21  Score=201.81  Aligned_cols=187  Identities=27%  Similarity=0.519  Sum_probs=146.0

Q ss_pred             CCCeeeeC----CCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCc---eEEeecCeEEEEeeeccCCCeEEEE
Q psy11143        228 APPIFIQR----PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGVRESDAGVYNC  300 (940)
Q Consensus       228 ~~p~~~~~----p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~---~~~~~~g~sL~I~~v~~~DsG~YtC  300 (940)
                      .+|.+...    +....+.+|+++.|.|.+.|.|.+.+.|++++..+.....   ........+|.|.++..+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            45555432    4567899999999999999999999999999998875433   2444455569999999999999999


Q ss_pred             EEEeCCCCceeEEEEEEeecc--CCeEEE-cCCceeecCCCeEEEEEeecCcCCCeEEEEe----CCeeeccCCcEEE--
Q psy11143        301 VAQNSEGSAESVAMIRINGHR--APRLVV-KPFDMRAPAGSSVEIPCKPDGEPLPRISWSK----DEAEFVEDRNHKI--  371 (940)
Q Consensus       301 ~A~N~~Gs~~~s~~l~V~~~~--~P~i~~-~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k----~g~~i~~~~~~~i--  371 (940)
                      .+.|..|.......+.|....  +|.+.. .+....+.+|+.++|.|.+.|.|.|.+.|++    ++..+..+.....  
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  169 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV  169 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee
Confidence            999999988888888876532  333333 4566788999999999999999999999999    7777654432211  


Q ss_pred             ---------eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        372 ---------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       372 ---------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                               ...++|.|.++..+|+|.|+|.|.|..|....++.|.|.++|.
T Consensus       170 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  221 (241)
T 3grw_A          170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA  221 (241)
T ss_dssp             EEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-----
T ss_pred             eeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCC
Confidence                     1245799999999999999999999999999999999998765

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.86  E-value=7.6e-21  Score=193.75  Aligned_cols=175  Identities=23%  Similarity=0.450  Sum_probs=145.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEee-ccCCCeEEEEECCEeecCCC--CeEEE--ee-------ceEEEEcccccCCCe
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDD--HVTYE--HD-------GFVLVLNGVRESDAG  112 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~~I~~~~--~~~~~--~~-------gs~L~I~~v~~~DsG  112 (940)
                      +|.|...|....+.+|+.++|.|.+. +.|.+.|.|+|+|..+....  +.++.  .+       ...|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            68899999999999999999999999 99999999999999987653  23333  11       356899999999999


Q ss_pred             EEEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCC-eEEEeeCCeeccccCceEEeee
Q psy11143        113 VYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRT  190 (940)
Q Consensus       113 ~YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p-~ItW~k~g~~i~~~~~~~~~~~  190 (940)
                      .|+|.+.|..+.... .+.|.|..  +|.+...+....+.+|+.+.|.|.+.|.|.+ .+.|++++..+......  ...
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~--~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--~~~  157 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEG--LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--GPQ  157 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECC--SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--SCC
T ss_pred             EEEEEEEeCCCceecccEEEEEec--CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--CCC
Confidence            999999998766444 36666654  5778888888899999999999999999999 99999999888655433  345


Q ss_pred             ceEEEeecccCCCceEEEEEEcCCccee-eeeeeee
Q psy11143        191 GSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTV  225 (940)
Q Consensus       191 ~sL~I~~v~~~DsG~YtC~a~N~~g~~s-~s~~L~V  225 (940)
                      +.|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       158 ~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          158 RSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            679999887  79999999999999875 6777777

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.86  E-value=3e-21  Score=194.83  Aligned_cols=181  Identities=22%  Similarity=0.423  Sum_probs=141.1

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC--CCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~--~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      +|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+...  .+.....++ .|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS-CEEETTCCGGGCEEEEEEEEETT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC-CEEEeeCCHhHCcEEEEEEEEcC
Confidence            678888999999999999999999999999999999999887643  333333333 47999999999999999999988


Q ss_pred             CceEEEEEEEEecccCCeeEecCC--ceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEee-eceEEEeecc
Q psy11143        123 GSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIG  199 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~P~~~~~p~--~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~-~~sL~I~~v~  199 (940)
                      +.......+.+....+|.+...+.  ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..... .+.|.|.++.
T Consensus        81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~  160 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII  160 (189)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCC
T ss_pred             CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCC
Confidence            665543333333333444544433  4577889999999999999999999999999887766655443 4579999999


Q ss_pred             cCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        200 PQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       200 ~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      .+|+|.|+|.|.|..|....++.|.|.
T Consensus       161 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          161 NSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            999999999999999998888888775

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.86  E-value=4.3e-21  Score=199.93  Aligned_cols=178  Identities=25%  Similarity=0.519  Sum_probs=144.4

Q ss_pred             CeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCce---EEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEE
Q psy11143        237 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA  313 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~---~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~  313 (940)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++..+....+.   .......+|.|.++..+|+|.|+|.+.|..|......
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  106 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY  106 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence            6778999999999999999999999999999998755432   3444455699999999999999999999999888788


Q ss_pred             EEEEeecc--CCeEEE-cCCceeecCCCeEEEEEeecCcCCCeEEEEe----CCeeeccCCcEE--Ee--------eece
Q psy11143        314 MIRINGHR--APRLVV-KPFDMRAPAGSSVEIPCKPDGEPLPRISWSK----DEAEFVEDRNHK--IH--------RTGS  376 (940)
Q Consensus       314 ~l~V~~~~--~P~i~~-~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k----~g~~i~~~~~~~--i~--------~~~s  376 (940)
                      .+.|....  +|.+.. .+....+.+|+.++|.|.+.+.|.|.+.|++    +|..+..+....  ..        ..++
T Consensus       107 ~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (231)
T 3ojm_B          107 HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV  186 (231)
T ss_dssp             EEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTE
T ss_pred             EEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccE
Confidence            88776532  333332 2456788999999999999999999999999    777665433211  11        1346


Q ss_pred             EEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       377 L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      |.|.++..+|+|.|+|.|.|..|....++.|.|..++.
T Consensus       187 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  224 (231)
T 3ojm_B          187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ  224 (231)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-
T ss_pred             EEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCC
Confidence            99999999999999999999999999999999998765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.86  E-value=1.6e-20  Score=190.76  Aligned_cols=176  Identities=23%  Similarity=0.365  Sum_probs=146.4

Q ss_pred             CCeeEecCCceeecC-CCcEEEEEEeCCCCC--CeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCC
Q psy11143        138 APRLVVKPFDMRAPA-GSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       138 ~P~~~~~p~~~~v~~-Ge~vtL~C~v~g~P~--p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      +|.+.. +....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+.......  .++.|.|.+++.+|+|.|+|.+.|. 
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~-   78 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA--SNMEYRINKPRAEDSGEYHCVYHFV-   78 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC--SEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe--ccEEEEEecCCcccCEEEEEEEEeC-
Confidence            355554 44566666 999999999998876  7899999999887654332  4578999999999999999999999 


Q ss_pred             cceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEE--CCeecC---CCCceEEeecC--eEEEE
Q psy11143        215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH--DGNSLD---SDDHVTYEHDG--FVLVL  287 (940)
Q Consensus       215 g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k--~g~~l~---~~~~~~~~~~g--~sL~I  287 (940)
                      +..+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++  ++..+.   ...++.+..++  .+|.|
T Consensus        79 ~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i  157 (190)
T 2wv3_A           79 SAPKANATIEVK-AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNI  157 (190)
T ss_dssp             TEEEEEEEEEEE-CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEE
T ss_pred             CcccccEEEEEe-cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEE
Confidence            888888889998 56777777888889999999999999999999999999  777664   44555555443  35999


Q ss_pred             eeec-cCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        288 NGVR-ESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       288 ~~v~-~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .++. .+|+|.|+|.|.|..|....++.|.|+
T Consensus       158 ~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          158 VNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             CSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999 799999999999999999888888875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.86  E-value=1.7e-20  Score=193.10  Aligned_cols=171  Identities=19%  Similarity=0.314  Sum_probs=142.4

Q ss_pred             ecCCeEEEEEEEeee-CCCeEEEEECCeecCCCCceEEeecC--eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        242 STGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~p~ItW~k~g~~l~~~~~~~~~~~g--~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      ..++.+.|.|.+.+. |.+.++|+|+|..+....++.+...+  ..|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            367888999999885 58899999999999888777766554  349999999999999999999988877766555443


Q ss_pred             e------------------ccCCeEE-EcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeee----c
Q psy11143        319 G------------------HRAPRLV-VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G  375 (940)
Q Consensus       319 ~------------------~~~P~i~-~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~----~  375 (940)
                      .                  ...|.+. ..+....+.+|+.++|.|.+.|.|.|.+.|+|++..+....++.+...    .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~  174 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA  174 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEE
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEE
Confidence            1                  1134444 445567899999999999999999999999999999987777776554    3


Q ss_pred             eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       376 sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      +|.|.++..+|+|.|+|.|.|..|....++.|.|..|
T Consensus       175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            8999999999999999999999999999999999854

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.86  E-value=1.8e-20  Score=189.86  Aligned_cols=180  Identities=21%  Similarity=0.370  Sum_probs=143.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccC-CCeEEEEE-CCEeecC-CCCeEEE---eeceEEEEcccccCCCeEEEEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFH-DGNSLDS-DDHVTYE---HDGFVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~k-dg~~I~~-~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a  118 (940)
                      |+.+...|....+.+|+.++|.|.+.+.| .+.|.|++ +|..+.. ..+..+.   .....|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            56778888999999999999999999876 78999999 8888763 3344443   23456899999999999999999


Q ss_pred             EeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeecccc--CceEEeeeceEEEe
Q psy11143        119 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIHRTGSLRLY  196 (940)
Q Consensus       119 ~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~--~~~~~~~~~sL~I~  196 (940)
                      .+..+. .....+.+.+..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...  .++....++.|.|.
T Consensus        82 ~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (191)
T 1epf_A           82 TAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR  160 (191)
T ss_dssp             EETTTE-EEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEET
T ss_pred             EcCCCc-ceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEEC
Confidence            998853 233334444445678888888889999999999999999999999999999888643  34555566789999


Q ss_pred             ecccCCCceEEEEEEcCCcceeeeeeeee
Q psy11143        197 NIGPQDSGLYRCTASNLLGEDVAEGYLTV  225 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~g~~s~s~~L~V  225 (940)
                      +++.+|+|.|+|.|.|..+.......+.|
T Consensus       161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          161 GIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             TCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            99999999999999998876555554444

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.86  E-value=1.2e-20  Score=189.91  Aligned_cols=173  Identities=24%  Similarity=0.465  Sum_probs=139.3

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee----ceEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD----GFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~----gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +|.+...|....+.+|+.++|.|.+.+.|.+.|.|+|++..+.......+...    ...|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            56778888899999999999999999999999999999999876655544433    25689999999999999999999


Q ss_pred             CCCceE-EEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCC-eEEEeeCCeeccccCceEEeeeceEEEeec
Q psy11143        121 SEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNI  198 (940)
Q Consensus       121 ~~g~~~-~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p-~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v  198 (940)
                      ..+... ..+.|.|..  +|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.....    ....|.|.++
T Consensus        82 ~~~~~~~~~~~l~V~~--~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~----~~~~L~i~~~  155 (182)
T 1rhf_A           82 GGETEISQPVWLTVEG--VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP----SPSVLNVTGV  155 (182)
T ss_dssp             CTTCEECCCEEEEEEC--SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE----SSEEEEECCC
T ss_pred             CCCcEEEEEEEEEEec--CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC----CceEEEEecc
Confidence            866544 356666654  6778888888899999999999999999999 9999999988754322    4567899888


Q ss_pred             ccCCCceEEEEEEcCCccee-eeeeeee
Q psy11143        199 GPQDSGLYRCTASNLLGEDV-AEGYLTV  225 (940)
Q Consensus       199 ~~~DsG~YtC~a~N~~g~~s-~s~~L~V  225 (940)
                        +|+|.|+|.|.|..|... ..+.|.|
T Consensus       156 --~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          156 --TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             --SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             --ccCeEEEEEEECCCCCcccceEEEEe
Confidence              589999999999999874 3666665

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.85  E-value=6.9e-21  Score=197.99  Aligned_cols=170  Identities=15%  Similarity=0.299  Sum_probs=135.6

Q ss_pred             CCceeecCCCcEEEEEEeCC-CCCCeEEEeeCCeeccccCceEEeeec-----eEEEeecccCCCceEEEEEEcCCccee
Q psy11143        145 PFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTG-----SLRLYNIGPQDSGLYRCTASNLLGEDV  218 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g-~P~p~ItW~k~g~~i~~~~~~~~~~~~-----sL~I~~v~~~DsG~YtC~a~N~~g~~s  218 (940)
                      +.+..+.+|+.+.|.|.+.+ .|.|.|+|+++|..+..+.++.+..+.     +|.|.+++.+|+|.|+|.|.|  |...
T Consensus         9 ~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~   86 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKAT   86 (207)
T ss_dssp             EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEE
T ss_pred             CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeE
Confidence            33678899999999999974 799999999999999877666554332     699999999999999999999  4433


Q ss_pred             eeeeeeec--------------------CCCCeeeeCCCeeEEecCCeEEEEEEEeee-CCCeEEEEECCeecCCCCceE
Q psy11143        219 AEGYLTVT--------------------GAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVT  277 (940)
Q Consensus       219 ~s~~L~V~--------------------~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~p~ItW~k~g~~l~~~~~~~  277 (940)
                      ....+.+.                    ..+|.+...+ ...+.+|+.+.|.|.+.|. |.|.|+|+|+|..+..+.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~  165 (207)
T 3rbs_A           87 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD  165 (207)
T ss_dssp             EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC
T ss_pred             EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE
Confidence            33332211                    0256665544 4788899999999999998 999999999999998766554


Q ss_pred             EeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        278 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       278 ~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      ......+|.|.++..+|+|.|+|.|.|..|....++.|.+
T Consensus       166 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          166 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            3333345999999999999999999999999988887765

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.85  E-value=1.9e-21  Score=201.75  Aligned_cols=164  Identities=19%  Similarity=0.263  Sum_probs=127.1

Q ss_pred             eeEEecCCeEEEEEE---EeeeCCCeEEEEECCeecCC-----------------CCceEE--eecCeEEEEeeeccCCC
Q psy11143        238 STTYSTGSTSRITCL---VEGHPLPQMTWFHDGNSLDS-----------------DDHVTY--EHDGFVLVLNGVRESDA  295 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~---v~G~P~p~ItW~k~g~~l~~-----------------~~~~~~--~~~g~sL~I~~v~~~Ds  295 (940)
                      .+++..|+.++|.|.   +.+.|.+.|+|+|+|..+..                 ..++.+  ..+...|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            457789999999995   56789999999998753321                 111121  22234599999999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeec----cCCcEEE
Q psy11143        296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKI  371 (940)
Q Consensus       296 G~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~----~~~~~~i  371 (940)
                      |.|+|.|.|..|.....+.|.|.  .||.+...+.+..+.+|++++|.|.+.|.|.|.|+|++++..+.    .+.++.+
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~--~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~  159 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVV--KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK  159 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE--EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEec--CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE
Confidence            99999999999988887777775  57888888888889999999999999999999999998765442    3456666


Q ss_pred             eeeceEEE---ecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143        372 HRTGSLRL---YNIGPQDSGLYRCTASNLLGEDVA  403 (940)
Q Consensus       372 ~~~~sL~I---~~v~~~D~G~YtC~A~N~~G~~~~  403 (940)
                      ..+++|.|   .++..+|+|.|+|.|.|..|.+..
T Consensus       160 ~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          160 EKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             eCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            66776544   689999999999999999998775

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.85  E-value=7.7e-21  Score=202.57  Aligned_cols=200  Identities=18%  Similarity=0.296  Sum_probs=125.4

Q ss_pred             CCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccC-----CCeEEEEECC--Eee-
Q psy11143         15 VQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDG--NSL-   86 (940)
Q Consensus        15 v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P-----~p~V~W~kdg--~~I-   86 (940)
                      ++.+|+|.|+|.|.   |.....+.+.+..++.+...|..+.+.+|++++|.|.+.+.|     .+.|.|+|++  ..+ 
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~   87 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPK   87 (254)
T ss_dssp             ------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCE
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCce
Confidence            78999999999998   444444445555577788888999999999999999999887     4899999843  221 


Q ss_pred             ---------c--CCCCeEEEee--ceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEEeccc-CCeeEecCCceeec
Q psy11143         87 ---------D--SDDHVTYEHD--GFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHR-APRLVVKPFDMRAP  151 (940)
Q Consensus        87 ---------~--~~~~~~~~~~--gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~-~P~~~~~p~~~~v~  151 (940)
                               .  ...++.....  ...|.|.+++.+|+|.|+|.|.|..+.... .+.+.|.... +|.+...+....+.
T Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~  167 (254)
T 2c1o_A           88 RLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQL  167 (254)
T ss_dssp             EEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHH
T ss_pred             EEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhc
Confidence                     1  1234444332  236899999999999999999987654332 3456665432 46666655444445


Q ss_pred             CCCcEEEEEEeCC-CCC-CeEEEeeCCeecccc-C---------ceEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        152 AGSSVEIPCKPDG-EPL-PRISWSKDEAEFVED-R---------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       152 ~Ge~vtL~C~v~g-~P~-p~ItW~k~g~~i~~~-~---------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      .|+.++|.|.+.| .|. +.++|+++|..+... .         .......+.|.|.++..+|+|.|+|.|.|.....
T Consensus       168 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            6889999999988 444 469999999877544 0         1111234579999999999999999999976543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.85  E-value=1.2e-20  Score=193.77  Aligned_cols=180  Identities=21%  Similarity=0.360  Sum_probs=138.4

Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeec------------CCCCceEEeecCeEEEEeeeccCCCeEE
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL------------DSDDHVTYEHDGFVLVLNGVRESDAGVY  298 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l------------~~~~~~~~~~~g~sL~I~~v~~~DsG~Y  298 (940)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++...  +.+|.|.++..+|+|.|
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~L~i~~v~~~D~G~Y   80 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--SSGITFSSVTRKDNGEY   80 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--TTEEEESCCCGGGCEEE
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee--ceeEEEcccCcccCeEE
Confidence            4556677888999999999999999999999999987652            223344433  25699999999999999


Q ss_pred             EEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEe-ecCcCCCeEEEEeCCe-eeccCCc--------
Q psy11143        299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEA-EFVEDRN--------  368 (940)
Q Consensus       299 tC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~-v~g~P~p~i~W~k~g~-~i~~~~~--------  368 (940)
                      +|.|.|..|.......+.+.+..+|.+...+....+.+|+.++|.|. +.+.|.|.|.|++++. .+.....        
T Consensus        81 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~  160 (212)
T 1f97_A           81 TCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS  160 (212)
T ss_dssp             EEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSS
T ss_pred             EEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCc
Confidence            99999998844444444444445666655555567899999999999 7999999999999998 7754322        


Q ss_pred             -EEE-eeeceEEEecCCCCCCeEEEEEEEeCCeeE--EEEEEEEEecC
Q psy11143        369 -HKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGED--VAEGYLTVTGE  412 (940)
Q Consensus       369 -~~i-~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~--~~s~~L~V~~~  412 (940)
                       +.. ...++|.|.++..+|+|.|+|.|.|..|..  +..+.|.|++.
T Consensus       161 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~~  208 (212)
T 1f97_A          161 SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL  208 (212)
T ss_dssp             CEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred             eeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEEe
Confidence             222 235689999999999999999999999988  45666777653

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.85  E-value=8.3e-21  Score=195.31  Aligned_cols=190  Identities=29%  Similarity=0.556  Sum_probs=146.0

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC----eEEE-eeceE----EEEcccccCCCeEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYE-HDGFV----LVLNGVRESDAGVY  114 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~----~~~~-~~gs~----L~I~~v~~~DsG~Y  114 (940)
                      .||.+...|....+.+|+.++|.|.+.+.|.+.|.|++++..+.....    .+.. .++.+    |.|.+++.+|+|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            368888899999999999999999999999999999999998864331    1222 33332    34556799999999


Q ss_pred             EEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeeccccCceEEeeece
Q psy11143        115 NCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGS  192 (940)
Q Consensus       115 tC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~~~~~~~~~~~~s  192 (940)
                      +|.+.|..|.... .+.|.|... ++.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+..........++.
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~  166 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAIL-RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK  166 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEE-CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTE
T ss_pred             EEEEECCCCceeecceEEEEEec-cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCe
Confidence            9999998876533 566666543 3345556677789999999999999 889999999999999887655555556778


Q ss_pred             EEEeecccCCCceEEEEEEcCCcceee-eeeeeecCCCCeeeeC
Q psy11143        193 LRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGAPPIFIQR  235 (940)
Q Consensus       193 L~I~~v~~~DsG~YtC~a~N~~g~~s~-s~~L~V~~~~p~~~~~  235 (940)
                      |.|.+++.+|+|.|+|.|.|..|.... .+.|.|. .+|.+...
T Consensus       167 L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~-~~P~~~~~  209 (212)
T 2v9r_A          167 LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL-ERPSFVKA  209 (212)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE-C-------
T ss_pred             EEEeeCCHhhCeeEEEEEecccCceecceEEEEEE-eCchHhhh
Confidence            999999999999999999999998654 4788887 45555443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.84  E-value=1.7e-20  Score=194.30  Aligned_cols=182  Identities=30%  Similarity=0.584  Sum_probs=146.4

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEE-eeceE---EEEcccccCCCeEEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYE-HDGFV---LVLNGVRESDAGVYNCV  117 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~-~~gs~---L~I~~v~~~DsG~YtC~  117 (940)
                      .+|.+...|....+.+|+.++|.|.+.+.|.+.|.|+|+|..+....  ..++. .++.+   |.|.+++.+|+|.|+|.
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            57899999999999999999999999999999999999999887542  22333 23333   36888999999999999


Q ss_pred             EEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeeccc--------cCceEE
Q psy11143        118 AQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVE--------DRNHKI  187 (940)
Q Consensus       118 a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~~--------~~~~~~  187 (940)
                      +.|..|.... ...+.|... +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..        ..+...
T Consensus        88 ~~n~~g~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~  166 (217)
T 2vr9_A           88 AKNRVGQAVSRHASLQIAVL-RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI  166 (217)
T ss_dssp             EEETTEEEECCCEEEEECEE-CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEE
T ss_pred             EecCCCccccccceEEEEEe-CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEe
Confidence            9998886543 556666543 3455566777889999999999999 8899999999999988862        344445


Q ss_pred             eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       188 ~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      ...++|.|.+++.+|+|.|+|.|.|..|....+..+.+.
T Consensus       167 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          167 VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             ETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            556789999999999999999999999987766555544

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=191.06  Aligned_cols=177  Identities=21%  Similarity=0.322  Sum_probs=142.1

Q ss_pred             eCCCeeEEecCCeEEEEEE-EeeeCC-CeEEEEECCeecC--CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        234 QRPVSTTYSTGSTSRITCL-VEGHPL-PQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~-v~G~P~-p~ItW~k~g~~l~--~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ..+....+.+|+.+.|.|. +.+.|. +.++|++++..+.  ...+......+.+|.|.++..+|+|.|+|.+.|..+..
T Consensus        13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence            3456778999999999999 899999 9999999998774  33334444444559999999999999999999977655


Q ss_pred             ee---EEEEEEee-----ccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEec
Q psy11143        310 ES---VAMIRING-----HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN  381 (940)
Q Consensus       310 ~~---s~~l~V~~-----~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~  381 (940)
                      ..   ...+.+..     ..+|.+...+....+.+|++++|.|.+.|.|.|.|.|++++..+....+. ....++|.|.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~-~~~~~~L~i~~  171 (201)
T 3s97_C           93 SVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI-STSGAVLKIFN  171 (201)
T ss_dssp             EEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEE-ETTTTEEEECS
T ss_pred             chhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceee-cCCCCEEEEcc
Confidence            43   22223321     24566776666788999999999999999999999999999877654322 23456899999


Q ss_pred             CCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       382 v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      +..+|+|.|+|.|.|..|....++.|.|++
T Consensus       172 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~a  201 (201)
T 3s97_C          172 IQLEDEGIYECEAENIRGKDKHQARIYVQA  201 (201)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CChhhCEEEEEEEEecCCceeeeEEEEEeC
Confidence            999999999999999999999999999863

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.84  E-value=1.4e-21  Score=219.13  Aligned_cols=201  Identities=20%  Similarity=0.225  Sum_probs=156.2

Q ss_pred             CCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeec
Q psy11143        202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD  281 (940)
Q Consensus       202 DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~  281 (940)
                      +.|.|+|.+.+..    ....+.+ ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...........
T Consensus       136 ~~~~~~C~~~~~l----~~l~~~~-c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  210 (347)
T 2ifg_A          136 PEQKLQCHGQGPL----AHMPNAS-CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLP  210 (347)
T ss_dssp             GGGCCCCSSSSCS----SCCCCTT-CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSS
T ss_pred             cccCCCCCCChHH----hcCCccc-CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecc
Confidence            4689999876621    1122222 2567788888888999999999999999999999999999876543221111223


Q ss_pred             CeEEEEeeeccCCCe-EEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCC
Q psy11143        282 GFVLVLNGVRESDAG-VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE  360 (940)
Q Consensus       282 g~sL~I~~v~~~DsG-~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g  360 (940)
                      ..+|.|.++..+|+| .|+|.|.|..|.....+.+.|.  .+|.+    ....+.+|+.++|.|.+.|.|.|.|+|+|+|
T Consensus       211 ~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~--~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g  284 (347)
T 2ifg_A          211 SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS--FPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG  284 (347)
T ss_dssp             EEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCB--EEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETT
T ss_pred             cceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEc--CCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCC
Confidence            345999999999999 9999999999888776655554  56665    1123457899999999999999999999999


Q ss_pred             eeeccCCcEEE----------eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        361 AEFVEDRNHKI----------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       361 ~~i~~~~~~~i----------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      ..+........          ...++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus       285 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             EECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            98875544332          125679999999999999999999999999999999887653

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.84  E-value=5.8e-20  Score=191.50  Aligned_cols=173  Identities=21%  Similarity=0.388  Sum_probs=144.1

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      ..+.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+....       +..|.|.++..+|+|.|+|.+.|..|
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~   89 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------TSELIFNAVHVKDAGFYVCRVNNNFT   89 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC-------SSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC-------CCEEEEccCChhhCeEeEEEEEcCCC
Confidence            45677788889999999999999999999999999999999886542       34599999999999999999999987


Q ss_pred             Cc-eeEEEEEEeec-------------cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee
Q psy11143        308 SA-ESVAMIRINGH-------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR  373 (940)
Q Consensus       308 s~-~~s~~l~V~~~-------------~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~  373 (940)
                      .. ...+.+.|...             .+|.+...+....+.+|+.++|.|.+.|.|.|.|.|++++..+....      
T Consensus        90 ~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~------  163 (218)
T 3k0w_A           90 FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------  163 (218)
T ss_dssp             CEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC------
T ss_pred             CceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC------
Confidence            55 34466666532             22778888888899999999999999999999999999998876543      


Q ss_pred             eceEEEecCCCCCCeEEEEEEEeCCee-EEEEEEEEEecCC
Q psy11143        374 TGSLRLYNIGPQDSGLYRCTASNLLGE-DVAEGYLTVTGEN  413 (940)
Q Consensus       374 ~~sL~I~~v~~~D~G~YtC~A~N~~G~-~~~s~~L~V~~~~  413 (940)
                      .++|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+.+
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~  204 (218)
T 3k0w_A          164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN  204 (218)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred             CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence            357999999999999999999999997 5557778887654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.84  E-value=8.7e-20  Score=192.01  Aligned_cols=184  Identities=28%  Similarity=0.522  Sum_probs=145.5

Q ss_pred             CCCeEEeC----CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC---eEEEeeceEEEEcccccCCCeEEEE
Q psy11143         44 APPIFIQR----PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        44 ~pP~~~~~----p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~---~~~~~~gs~L~I~~v~~~DsG~YtC  116 (940)
                      .+|.+...    +....+.+|+++.|.|.+.+.|.+.|.|+|+|..+.....   .........|.|.+++.+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            35655433    4568899999999999999999999999999998864432   2444455578999999999999999


Q ss_pred             EEEeCCCceEEEEEEEEecccC--CeeE-ecCCceeecCCCcEEEEEEeCCCCCCeEEEee----CCeeccccCceEE--
Q psy11143        117 VAQNSEGSAESVAMIRINGHRA--PRLV-VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK----DEAEFVEDRNHKI--  187 (940)
Q Consensus       117 ~a~n~~g~~~~~~~L~V~~~~~--P~~~-~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k----~g~~i~~~~~~~~--  187 (940)
                      .+.|..+.......+.|.....  |.+. ..+....+.+|+.++|.|.+.+.|.+.+.|++    ++..+........  
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  169 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV  169 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee
Confidence            9999988887788888876432  3333 34567788999999999999999999999999    7777654433211  


Q ss_pred             ---------eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecC
Q psy11143        188 ---------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  227 (940)
Q Consensus       188 ---------~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~  227 (940)
                               ...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       170 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  218 (241)
T 3grw_A          170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG  218 (241)
T ss_dssp             EEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             eeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence                     1345799999999999999999999999999999998874

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.83  E-value=3.4e-20  Score=190.45  Aligned_cols=178  Identities=21%  Similarity=0.366  Sum_probs=135.0

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeec------------CCCCeEEEeeceEEEEcccccCCCe
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD------------SDDHVTYEHDGFVLVLNGVRESDAG  112 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~------------~~~~~~~~~~gs~L~I~~v~~~DsG  112 (940)
                      |..+...+..+.+.+|+.+.|.|.+.+.|.+.|.|+|++..+.            ...+..  ..+..|.|.+++.+|+|
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~L~i~~v~~~D~G   78 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT--FSSSGITFSSVTRKDNG   78 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEE--EETTEEEESCCCGGGCE
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEE--eeceeEEEcccCcccCe
Confidence            3456777888999999999999999999999999999876531            122333  23366899999999999


Q ss_pred             EEEEEEEeCCCce--EEEEEEEEecccCCeeEecCCceeecCCCcEEEEEE-eCCCCCCeEEEeeCCe-eccccCc----
Q psy11143        113 VYNCVAQNSEGSA--ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEA-EFVEDRN----  184 (940)
Q Consensus       113 ~YtC~a~n~~g~~--~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~-v~g~P~p~ItW~k~g~-~i~~~~~----  184 (940)
                      .|+|.+.+..|..  ...+.|.|..  +|.+...+....+.+|+.++|.|. +.+.|.+.+.|++++. .+.....    
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~l~V~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~  156 (212)
T 1f97_A           79 EYTCMVSEEGGQNYGEVSIHLTVLV--PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRA  156 (212)
T ss_dssp             EEEEEEEETTSSSEEEEEEEEEEEB--CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBS
T ss_pred             EEEEEEEccCCCcccEEEEEEEEEc--CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccccccc
Confidence            9999999987743  3355555554  444444444567889999999999 7899999999999998 7764322    


Q ss_pred             -----eEE-eeeceEEEeecccCCCceEEEEEEcCCcce--eeeeeeeec
Q psy11143        185 -----HKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGED--VAEGYLTVT  226 (940)
Q Consensus       185 -----~~~-~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~--s~s~~L~V~  226 (940)
                           +.. ...+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       157 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          157 FMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             CSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             ccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence                 112 234579999999999999999999999987  445555554

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.83  E-value=5.2e-20  Score=191.72  Aligned_cols=184  Identities=25%  Similarity=0.516  Sum_probs=146.1

Q ss_pred             CCeEEeCC----CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe---EEEeeceEEEEcccccCCCeEEEEE
Q psy11143         45 PPIFIQRP----VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        45 pP~~~~~p----~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~---~~~~~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      +|.|...+    ....+.+|+.++|.|.+.+.|.+.|.|+|++..+......   ........|.|.+++.+|+|.|+|.
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV   94 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEE
Confidence            56665544    7788999999999999999999999999999988654332   4444555789999999999999999


Q ss_pred             EEeCCCceEEEEEEEEecccC--CeeEe-cCCceeecCCCcEEEEEEeCCCCCCeEEEee----CCeeccccCceEE--e
Q psy11143        118 AQNSEGSAESVAMIRINGHRA--PRLVV-KPFDMRAPAGSSVEIPCKPDGEPLPRISWSK----DEAEFVEDRNHKI--H  188 (940)
Q Consensus       118 a~n~~g~~~~~~~L~V~~~~~--P~~~~-~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k----~g~~i~~~~~~~~--~  188 (940)
                      +.|..+.......|.|...+.  |.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++    ++..+........  .
T Consensus        95 ~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~  174 (231)
T 3ojm_B           95 VENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL  174 (231)
T ss_dssp             EEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEE
T ss_pred             EecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEe
Confidence            999988887788888876433  22222 3466788999999999999999999999999    7766643322111  1


Q ss_pred             --------eeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCC
Q psy11143        189 --------RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA  228 (940)
Q Consensus       189 --------~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~  228 (940)
                              ..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...
T Consensus       175 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  222 (231)
T 3ojm_B          175 KHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK  222 (231)
T ss_dssp             EECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecC
Confidence                    1246999999999999999999999999998999988843

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.83  E-value=1.8e-19  Score=185.44  Aligned_cols=168  Identities=21%  Similarity=0.326  Sum_probs=139.8

Q ss_pred             cCCCcEEEEEEeCCC-CCCeEEEeeCCeeccccCceEEeeec---eEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        151 PAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       151 ~~Ge~vtL~C~v~g~-P~p~ItW~k~g~~i~~~~~~~~~~~~---sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      ..++.+.|.|.+.+. |.+.++|++++..+....++.+...+   .|.|.+++.+|+|.|+|.+.|..+.....+.|.|.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            367888999998884 58899999999998877776654433   49999999999999999999988887777777654


Q ss_pred             C--------------------CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeec-C--e
Q psy11143        227 G--------------------APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD-G--F  283 (940)
Q Consensus       227 ~--------------------~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~-g--~  283 (940)
                      .                    .++.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +  .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~  174 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA  174 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEE
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEE
Confidence            2                    334444556678899999999999999999999999999999988777766544 2  3


Q ss_pred             EEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       284 sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            69999999999999999999999998888777775

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.83  E-value=2.4e-20  Score=193.46  Aligned_cols=164  Identities=21%  Similarity=0.228  Sum_probs=127.5

Q ss_pred             ceeecCCCcEEEEEE---eCCCCCCeEEEeeCCeeccc-----------------cCceEEe---eeceEEEeecccCCC
Q psy11143        147 DMRAPAGSSVEIPCK---PDGEPLPRISWSKDEAEFVE-----------------DRNHKIH---RTGSLRLYNIGPQDS  203 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~---v~g~P~p~ItW~k~g~~i~~-----------------~~~~~~~---~~~sL~I~~v~~~Ds  203 (940)
                      ++++..|++++|.|.   +.+.|.+.|+|+|+|..+..                 ..++...   ....|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            467889999999995   66789999999997643321                 0111111   234699999999999


Q ss_pred             ceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecC----CCCceEEe
Q psy11143        204 GLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD----SDDHVTYE  279 (940)
Q Consensus       204 G~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~----~~~~~~~~  279 (940)
                      |.|+|.|.|..|..+..+.|.|. .||.+...+....+.+|+.++|.|.+.|.|.|.|+|++++..+.    .+.++.+.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~-~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~  160 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE  160 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE-EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC
T ss_pred             eEEEEEEEcCCCcEEEEEEEEec-CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe
Confidence            99999999999999999999988 67777777777888999999999999999999999998765443    34456666


Q ss_pred             ecCe--EEEEeeeccCCCeEEEEEEEeCCCCcee
Q psy11143        280 HDGF--VLVLNGVRESDAGVYNCVAQNSEGSAES  311 (940)
Q Consensus       280 ~~g~--sL~I~~v~~~DsG~YtC~A~N~~Gs~~~  311 (940)
                      .+|.  .+.|.++..+|+|.|+|.|.|..|....
T Consensus       161 ~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          161 KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             TTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            6664  2556789999999999999999998765

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.83  E-value=1e-19  Score=188.35  Aligned_cols=168  Identities=15%  Similarity=0.238  Sum_probs=132.6

Q ss_pred             CCeeeeCCCeeEEecCCeEEEEEEEeeeCCCe-EEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .|.+...|....+.+|++++|.|.+.+.|.+. +.|+|+|..+....        .+|.|.+++.+|+|.|+|.|.|.. 
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------~~L~i~~v~~~D~G~Y~C~a~n~~-   77 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------SSYFIDAATVDDSGEYRCQTQLST-   77 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------SEEEESSCCGGGCEEEEEEETTSB-
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------cEEEEecccccCCEEEEEEeCCCc-
Confidence            35566667778899999999999999998875 99999999886543        459999999999999999998743 


Q ss_pred             CceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCc-CCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCC
Q psy11143        308 SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD  386 (940)
Q Consensus       308 s~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D  386 (940)
                       .+..+.|.|.  .+|.+...+. ..+.+|++++|.|.+.+. |.+.|.|+|+|..+..     ....++|.|.+++.+|
T Consensus        78 -~s~~~~l~V~--~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~-----~~~~~~L~i~~v~~~D  148 (204)
T 3sgj_C           78 -LSDPVQLEVH--IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY-----FHHNSDFYIPKATLKD  148 (204)
T ss_dssp             -CCCCEEEEEE--CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-----EEECCCEEESSCCGGG
T ss_pred             -ccccEEEEEe--cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-----ccCCceEEECcCCccc
Confidence             3334455554  4566665554 678899999999999766 5579999999987632     2345689999999999


Q ss_pred             CeEEEEEEEe-CCeeEEEEEEEEEecCCC
Q psy11143        387 SGLYRCTASN-LLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       387 ~G~YtC~A~N-~~G~~~~s~~L~V~~~~~  414 (940)
                      +|.|+|.|.| ..+..+..+.|.|.+++.
T Consensus       149 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          149 SGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence            9999999999 555666788899987654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.83  E-value=1e-19  Score=189.07  Aligned_cols=177  Identities=16%  Similarity=0.249  Sum_probs=130.5

Q ss_pred             CCeeEEecC--CeEEEEEEEeeeCCCeEEEEEC---CeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        236 PVSTTYSTG--STSRITCLVEGHPLPQMTWFHD---GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       236 p~~~~v~~G--~~v~L~C~v~G~P~p~ItW~k~---g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      +....+.+|  +++.|.|.+.+ |.+.++|++.   +..+....++.....+ .|.|.++..+|+|.|+|.|.|..+...
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~-~l~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK-GFTIPSYMISYAGMVFCEAKINDESYQ   91 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT-EEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc-cEEEccCChhcCceEEEEEEECCeeEE
Confidence            467788999  99999999986 7799999884   6666655555544444 499999999999999999998544332


Q ss_pred             e-EEEEEEeeccCCeEEEcCCc-eeecCCCeEEEEEeecCcCC--CeEEEEeCCeeeccCCc-E-E---------Eeeec
Q psy11143        311 S-VAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRN-H-K---------IHRTG  375 (940)
Q Consensus       311 ~-s~~l~V~~~~~P~i~~~p~~-~~v~~G~~vtL~C~v~g~P~--p~i~W~k~g~~i~~~~~-~-~---------i~~~~  375 (940)
                      . ...|.|....+|.+...+.. +.+.+|++++|.|.+.|.|.  +.|.|++++..+..... . .         ....+
T Consensus        92 s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (213)
T 2x1w_L           92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS  171 (213)
T ss_dssp             CCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEE
T ss_pred             EEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeE
Confidence            2 24566644345556555544 48999999999999998654  48999999875422111 0 0         12245


Q ss_pred             eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       376 sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      +|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus       172 ~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             EEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            799999999999999999999999999999999998754

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.7e-19  Score=186.48  Aligned_cols=170  Identities=21%  Similarity=0.389  Sum_probs=142.7

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      ..+.+...|..+.+.+|+.+.|.|.+.+.|.+.|.|+|++..+...       .+..|.|.+++.+|+|.|+|.+.|..+
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~   89 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCRVNNNFT   89 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-------CSSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-------CCCEEEEccCChhhCeEeEEEEEcCCC
Confidence            3578889999999999999999999999999999999999988654       245679999999999999999999877


Q ss_pred             ceEE-EEEEEEeccc-------------CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEee
Q psy11143        124 SAES-VAMIRINGHR-------------APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR  189 (940)
Q Consensus       124 ~~~~-~~~L~V~~~~-------------~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~  189 (940)
                      .... .+.|.|...+             .|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+....      
T Consensus        90 ~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~------  163 (218)
T 3k0w_A           90 FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------  163 (218)
T ss_dssp             CEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC------
T ss_pred             CceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC------
Confidence            6533 5667776431             2677778888899999999999999999999999999998876543      


Q ss_pred             eceEEEeecccCCCceEEEEEEcCCcc-eeeeeeeeec
Q psy11143        190 TGSLRLYNIGPQDSGLYRCTASNLLGE-DVAEGYLTVT  226 (940)
Q Consensus       190 ~~sL~I~~v~~~DsG~YtC~a~N~~g~-~s~s~~L~V~  226 (940)
                      ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            347999999999999999999998887 5556667666

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=5.9e-19  Score=177.95  Aligned_cols=163  Identities=22%  Similarity=0.397  Sum_probs=130.3

Q ss_pred             eEEecCCeEEEEEEEeeeCCC--eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEE
Q psy11143        239 TTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  316 (940)
Q Consensus       239 ~~v~~G~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~  316 (940)
                      ..+.+|+.++|.|.+.+.|.|  .+.|++++..+.......   ....|.|.  +.+|+|.|+|.|.|.   ....+.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~---~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~   79 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG---QKTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQ   79 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC---SEEEEEEC--GGGCCEEEEEEEEST---TSCEEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC---CcEEEEEe--chhhCeEEEEEEECC---cCcEEEEE
Confidence            467889999999999998877  999999999887554321   12236555  689999999999983   23455566


Q ss_pred             EeeccCCeEEEcCCceeecCCCeEEEEEeecCcC-CCeEEEEe---CCee-ecc--CCcEEEeeec---eEEEecCC-CC
Q psy11143        317 INGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSK---DEAE-FVE--DRNHKIHRTG---SLRLYNIG-PQ  385 (940)
Q Consensus       317 V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k---~g~~-i~~--~~~~~i~~~~---sL~I~~v~-~~  385 (940)
                      |.  .+|.+...+....+.+|++++|.|.+.|.| .|.|.|++   ++.. +..  ..++.+...+   +|.|.++. .+
T Consensus        80 V~--~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~  157 (184)
T 3b5h_A           80 LH--GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA  157 (184)
T ss_dssp             EC--CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTT
T ss_pred             Ee--cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccc
Confidence            64  688888888778899999999999999999 79999999   4543 332  2566665544   89999999 99


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        386 DSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       386 D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      |+|.|+|.|.|..|....++.|.|++
T Consensus       158 d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          158 DPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             cCceEEEEEEeCCCcceEEEEEEEec
Confidence            99999999999999999999998864

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.82  E-value=3.5e-20  Score=190.44  Aligned_cols=175  Identities=19%  Similarity=0.320  Sum_probs=134.7

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeC----CCeEEEEE----------------CCeecCC-----CCceEEee-----cCeE
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFH----------------DGNSLDS-----DDHVTYEH-----DGFV  284 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P----~p~ItW~k----------------~g~~l~~-----~~~~~~~~-----~g~s  284 (940)
                      .+....+.+|++++|.|.+.+.|    .+.+.|++                ++..+..     ..+..+..     ...+
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            34567889999999999999877    46999998                4444432     33444433     2345


Q ss_pred             EEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEee-cCcCCCeEEEEeCC--e
Q psy11143        285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDE--A  361 (940)
Q Consensus       285 L~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g--~  361 (940)
                      |.|.+++.+|+|.|+|.|.|..|.....+.|.|..  +|.+...+....+.+|+.++|.|.+ .|.|.|.|.|++++  .
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~--~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~  163 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV--KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQ  163 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTC
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc--CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCC
Confidence            99999999999999999999988877777777753  4554443444457899999999999 89999999999954  3


Q ss_pred             eeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        362 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       362 ~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      .+.... ......++|.|.++..+|+|.|+|.|.|..|....++.|.|..|
T Consensus       164 ~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          164 TMPTPW-LAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CCCGGG-GGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             ccCccc-eeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            332221 11223568999999999999999999999999999999988754

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.82  E-value=1.3e-19  Score=193.07  Aligned_cols=199  Identities=18%  Similarity=0.294  Sum_probs=122.5

Q ss_pred             cccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCC-----CCeEEEeeCC--ee
Q psy11143        106 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP-----LPRISWSKDE--AE  178 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P-----~p~ItW~k~g--~~  178 (940)
                      ++.+|+|.|+|.|.   |.......+.+.  ..+.+...+....+.+|++++|.|.+.+.|     .+.+.|++++  ..
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~--~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~   85 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWL--RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQS   85 (254)
T ss_dssp             --------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhhee--eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCC
Confidence            78999999999998   433333333332  256677778889999999999999999987     4899999832  22


Q ss_pred             cc------------ccCceEEeee---ceEEEeecccCCCceEEEEEEcCCccee-eeeeeeecC--CCCeeeeCCCeeE
Q psy11143        179 FV------------EDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTG--APPIFIQRPVSTT  240 (940)
Q Consensus       179 i~------------~~~~~~~~~~---~sL~I~~v~~~DsG~YtC~a~N~~g~~s-~s~~L~V~~--~~p~~~~~p~~~~  240 (940)
                      +.            ...++.....   .+|.|.+++.+|+|.|+|.+.|..+... ....+.|..  .+|.+...+....
T Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~  165 (254)
T 2c1o_A           86 PKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE  165 (254)
T ss_dssp             CEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH
T ss_pred             ceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh
Confidence            20            1234444333   3799999999999999999998765422 223455542  2455555444333


Q ss_pred             EecCCeEEEEEEEeee-CC-CeEEEEECCeecCCCC--ceEE--eec-----CeEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        241 YSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDD--HVTY--EHD-----GFVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~--~~~~--~~~-----g~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ...|+.++|.|.+.|. |+ +.|+|+|+|..+....  ....  ..+     ...|.|.++..+|+|.|+|.|.|.....
T Consensus       166 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          166 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            4468899999999985 44 3699999999886551  1111  011     2359999999999999999999987764

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.82  E-value=6.3e-20  Score=187.80  Aligned_cols=168  Identities=18%  Similarity=0.245  Sum_probs=127.9

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEe-ecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~-~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .+|.+...|.. .+.+|++++|.|.+.+ |.+.+.|+|++..+......... ..+..|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            34566666665 7889999999999998 77899999999887643221111 233469999999999999999999998


Q ss_pred             CC--ceeEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcE----EEeeeceEEE
Q psy11143        307 GS--AESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH----KIHRTGSLRL  379 (940)
Q Consensus       307 Gs--~~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~----~i~~~~sL~I  379 (940)
                      |.  .+..+.|.|... .+|.+...+.. .+.+|++++|.|.+.+. .+.+.|+|+|..+......    .....+.|.|
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i  159 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPM  159 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEE
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceEEEe
Confidence            83  344556666543 35666666553 67899999999999874 4699999999876543322    1234568999


Q ss_pred             ecCCCCCCeEEEEEEEeCCe
Q psy11143        380 YNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       380 ~~v~~~D~G~YtC~A~N~~G  399 (940)
                      .+++.+|+|.|+|.|.|..+
T Consensus       160 ~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          160 SPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             CSCCGGGCEEEEEEEECGGG
T ss_pred             CCCcccCCCeEEEEEEcCCC
Confidence            99999999999999999886

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=186.26  Aligned_cols=168  Identities=18%  Similarity=0.258  Sum_probs=128.1

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE-eeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~-~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...|.. .|.+|++++|.|.+.+ +.+.+.|+|+|..+......... .....|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            46788888877 8999999999999988 67899999999877532111111 234568999999999999999999988


Q ss_pred             Cc--eEEEEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCce----EEeeeceEEE
Q psy11143        123 GS--AESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH----KIHRTGSLRL  195 (940)
Q Consensus       123 g~--~~~~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~----~~~~~~sL~I  195 (940)
                      |.  ....+.|.|.... .|.+...+.. .+.+|++++|.|.+.+ +.+.+.|++++..+......    .....+.|.|
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i  159 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPM  159 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEE
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEe
Confidence            73  2335667776543 4555555543 7889999999999987 44689999998876543221    1234567999


Q ss_pred             eecccCCCceEEEEEEcCCc
Q psy11143        196 YNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       196 ~~v~~~DsG~YtC~a~N~~g  215 (940)
                      .+++.+|+|.|+|.|.|..+
T Consensus       160 ~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          160 SPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             CSCCGGGCEEEEEEEECGGG
T ss_pred             CCCcccCCCeEEEEEEcCCC
Confidence            99999999999999999876

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.82  E-value=1.5e-20  Score=192.65  Aligned_cols=179  Identities=19%  Similarity=0.374  Sum_probs=136.8

Q ss_pred             CCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeec------------CCCCceEEeecCeEEEEeeeccCCCe
Q psy11143        229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL------------DSDDHVTYEHDGFVLVLNGVRESDAG  296 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l------------~~~~~~~~~~~g~sL~I~~v~~~DsG  296 (940)
                      +..+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+            ....++....  .+|.|.++..+|+|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~~~~~d~G   81 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTG   81 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec--cEEEEeeCCHHHCc
Confidence            344556677788999999999999999999999999987652            1223344332  56999999999999


Q ss_pred             EEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeeccCCc-------
Q psy11143        297 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRN-------  368 (940)
Q Consensus       297 ~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~~~~-------  368 (940)
                      .|+|.+.|..|....+..+.+.+..+|.+...+....+.+|+.++|.|.+ .+.|.|.|.|++++..+.....       
T Consensus        82 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  161 (209)
T 1nbq_A           82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN  161 (209)
T ss_dssp             EEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTT
T ss_pred             EEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeec
Confidence            99999999977444434444444456766555556678899999999997 8999999999999987765432       


Q ss_pred             --EEEe-eeceEEEecCCCCCCeEEEEEEEeCCeeEEEE--EEEEE
Q psy11143        369 --HKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE--GYLTV  409 (940)
Q Consensus       369 --~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s--~~L~V  409 (940)
                        +.+. ..++|.|.++..+|+|.|+|.|.|..|....+  +.|.|
T Consensus       162 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          162 SSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             cceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence              1221 34689999999999999999999999988444  44444

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.81  E-value=2.8e-19  Score=183.68  Aligned_cols=174  Identities=16%  Similarity=0.231  Sum_probs=133.8

Q ss_pred             CCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecC-------------------CCCceEEeecCeEEEEeeeccCCCe
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-------------------SDDHVTYEHDGFVLVLNGVRESDAG  296 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~-------------------~~~~~~~~~~g~sL~I~~v~~~DsG  296 (940)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++....                   ...+..+..++. |.|.+++.+|+|
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~-L~i~~v~~~D~G   84 (208)
T 3r4d_A            6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS-LLFQMITMKDMG   84 (208)
T ss_dssp             EESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSC-EEECSCCGGGCE
T ss_pred             CccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCe-EEEccccccCCe
Confidence            344678899999999998888999999999754221                   122344444444 999999999999


Q ss_pred             EEEEEEEeCC-CCceeEEEEEEeecc-CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeee
Q psy11143        297 VYNCVAQNSE-GSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT  374 (940)
Q Consensus       297 ~YtC~A~N~~-Gs~~~s~~l~V~~~~-~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~  374 (940)
                      .|+|.+.|.. +.......|.|.... .|.+...+..  +.+|++++|.|.+.+.| |.|.|++++..+..+.++.+...
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~  161 (208)
T 3r4d_A           85 VYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQN  161 (208)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETT
T ss_pred             EEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCC
Confidence            9999999985 444556666665432 3555554443  88999999999999977 89999999999887777776654


Q ss_pred             -ceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEEEEecCC
Q psy11143        375 -GSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGEN  413 (940)
Q Consensus       375 -~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~~~  413 (940)
                       ++|.|.++..+|+|.|+|.|.|..|...+ .+.|.|..++
T Consensus       162 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~  202 (208)
T 3r4d_A          162 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP  202 (208)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC---
T ss_pred             CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCC
Confidence             68999999999999999999999998665 5666666554

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=184.62  Aligned_cols=180  Identities=21%  Similarity=0.321  Sum_probs=140.7

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEE-eeccCC-CeEEEEECCEeecC--CCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCL-VEGHPL-PQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~-v~g~P~-p~V~W~kdg~~I~~--~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      +.....+..+.+.+|+.+.|.|. +.+.|. +.|.|+|++..+..  .........+..|.|.+++.+|+|.|+|.+.+.
T Consensus         9 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   88 (201)
T 3s97_C            9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSP   88 (201)
T ss_dssp             CCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEG
T ss_pred             ccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEec
Confidence            33344567889999999999999 888888 99999999987742  233333344556899999999999999999997


Q ss_pred             CCceEE---EEEEEEecc-----cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceE
Q psy11143        122 EGSAES---VAMIRINGH-----RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL  193 (940)
Q Consensus       122 ~g~~~~---~~~L~V~~~-----~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL  193 (940)
                      .+....   ...+.+...     .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.... ......+.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~-~~~~~~~~L  167 (201)
T 3s97_C           89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA-EISTSGAVL  167 (201)
T ss_dssp             GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC-EEETTTTEE
T ss_pred             CCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce-eecCCCCEE
Confidence            766554   233333211     23456666667889999999999999999999999999998776442 222345689


Q ss_pred             EEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       194 ~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      .|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       168 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          168 KIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            999999999999999999999999888888875

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.81  E-value=5.1e-19  Score=177.76  Aligned_cols=167  Identities=14%  Similarity=0.222  Sum_probs=132.2

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCe-EEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .+|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+..        .+.+|.|.++..+|+|.|+|.+.|..
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~~~n~~   77 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQTNLST   77 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--------CceEEEEeCCCcccCEEEEEEeeCCc
Confidence            456667777777899999999999999998776 889999987753        23459999999999999999999865


Q ss_pred             CCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCC
Q psy11143        307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ  385 (940)
Q Consensus       307 Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~  385 (940)
                      ++  ....+.|.  .+|.+... ....+.+|+.++|.|.+.+.|.+ .|.|+|+|..+..     ....+.|.|.+++.+
T Consensus        78 ~s--~~~~l~V~--~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-----~~~~~~L~i~~v~~~  147 (175)
T 1fnl_A           78 LS--DPVQLEVH--IGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-----FHHNSDFHIPKATLK  147 (175)
T ss_dssp             CC--CCEEEEEE--CSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-----EEECCCEEESSCCGG
T ss_pred             cc--ccEEEEEe--CCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-----CCCCCEEEEcccChh
Confidence            53  34455565  34444443 44678899999999999988765 9999999987732     234578999999999


Q ss_pred             CCeEEEEEEEeCCee-EEEEEEEEEecC
Q psy11143        386 DSGLYRCTASNLLGE-DVAEGYLTVTGE  412 (940)
Q Consensus       386 D~G~YtC~A~N~~G~-~~~s~~L~V~~~  412 (940)
                      |+|.|+|.|.|..|. .+..+.|.|.++
T Consensus       148 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          148 DSGSYFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             hCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence            999999999997664 555777888753

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.81  E-value=4e-20  Score=189.52  Aligned_cols=179  Identities=17%  Similarity=0.325  Sum_probs=134.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEee----------cCCCCeEEEeeceEEEEcccccCCCeEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL----------DSDDHVTYEHDGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I----------~~~~~~~~~~~gs~L~I~~v~~~DsG~Y  114 (940)
                      ++.+...|....+.+|+++.|.|.+.+.|.+.|.|+|++..+          ......++...+..|.|.+++.+|+|.|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y   83 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY   83 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEE
Confidence            456677788889999999999999999999999999987652          1111112222236689999999999999


Q ss_pred             EEEEEeCCCceEE--EEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeeccccCce------
Q psy11143        115 NCVAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNH------  185 (940)
Q Consensus       115 tC~a~n~~g~~~~--~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~~~~~~------  185 (940)
                      +|.+.+..|....  ...|.|..  +|.+...+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+......      
T Consensus        84 ~C~~~~~~g~~~~~~~~~l~V~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  161 (209)
T 1nbq_A           84 TCMVSEEGGNSYGEVKVKLIVLV--PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN  161 (209)
T ss_dssp             EEEEEETTSSCEECCEEECCEEB--CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTT
T ss_pred             EEEEecCCCCccceEEEEEEEec--CCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeec
Confidence            9999998764444  44455543  4444444555678899999999997 89999999999999877653321      


Q ss_pred             ---EE-eeeceEEEeecccCCCceEEEEEEcCCcceee--eeeeee
Q psy11143        186 ---KI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA--EGYLTV  225 (940)
Q Consensus       186 ---~~-~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~--s~~L~V  225 (940)
                         .. ...+.|.|.+++.+|+|.|+|.|.|..|....  .+.|.|
T Consensus       162 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          162 SSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             cceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence               11 13457999999999999999999999998744  444444

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=182.17  Aligned_cols=161  Identities=18%  Similarity=0.203  Sum_probs=126.5

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      +..+|.+...|.. .+.+|++++|.|.+.+ |.+.+.|+|+|..        ....+..|.|.+++.+|+|.|+|.+.|.
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   74 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS--------RYQDQAVLFIPAMKRSLAGRYRCSYQNG   74 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC--------CEESSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc--------ccCcccEEEECcCChhhCceEEEEEEcC
Confidence            3457888888775 7999999999999988 7789999999875        1234556799999999999999999998


Q ss_pred             CCceE--EEEEEEEecc-cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeec
Q psy11143        122 EGSAE--SVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI  198 (940)
Q Consensus       122 ~g~~~--~~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v  198 (940)
                      .|...  ..+.|.|... ..|.+...+ ...+.+|++++|.|.+.+.| +.+.|++++..+..... .....+.|.|.++
T Consensus        75 ~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~-~~~~~~~L~i~~v  151 (184)
T 2gi7_A           75 SLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP-ERWYRASFPIITV  151 (184)
T ss_dssp             TEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC-CEEEEESSSEEEE
T ss_pred             CCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec-CCCceEEEEEccC
Confidence            76322  3466676553 345666665 56788999999999987655 69999999987765322 2334568999999


Q ss_pred             ccCCCceEEEEEEcCCc
Q psy11143        199 GPQDSGLYRCTASNLLG  215 (940)
Q Consensus       199 ~~~DsG~YtC~a~N~~g  215 (940)
                      +.+|+|.|+|.|.|..+
T Consensus       152 ~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          152 TAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             TTCCSEEEEEEEECTTS
T ss_pred             CccCCeEEEEEEEeCCC
Confidence            99999999999999754

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=185.90  Aligned_cols=168  Identities=16%  Similarity=0.221  Sum_probs=116.3

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe-EEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-TYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~-~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...|.. .+.+|++|+|.|.+.+.|. .|.|+|+|..+...... .....+..|.|.+++.+|+|.|+|.+.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            56888888774 7899999999999988776 99999999876432110 011334568999999999999999999987


Q ss_pred             CceE--EEEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCce-EE----eeeceEE
Q psy11143        123 GSAE--SVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KI----HRTGSLR  194 (940)
Q Consensus       123 g~~~--~~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~-~~----~~~~sL~  194 (940)
                      |...  ..+.|.|.... .|.+...+ ...+.+|++++|.|.+.+.| +.+.|+|++..+...... ..    ...+.|.
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~  159 (196)
T 2d3v_A           82 GWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFP  159 (196)
T ss_dssp             EECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEE
T ss_pred             CcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEE
Confidence            6433  35667776533 45554443 35788999999999999988 899999999876432111 11    1236899


Q ss_pred             EeecccCCCceEEEEEEcCCc
Q psy11143        195 LYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       195 I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      |.+++.+|+|.|+|.|.|..+
T Consensus       160 I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          160 VGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             CCCCBTTBCEEEEEEEEETTE
T ss_pred             eeecCcccCeeEEEEEEccCC
Confidence            999999999999999998754

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.81  E-value=3.3e-19  Score=188.47  Aligned_cols=176  Identities=15%  Similarity=0.256  Sum_probs=130.4

Q ss_pred             eCCCeeEEecCCeEEEEEEEee---eCCCeEEEEECCeecC------------------------------CCCceEEee
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLD------------------------------SDDHVTYEH  280 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G---~P~p~ItW~k~g~~l~------------------------------~~~~~~~~~  280 (940)
                      ..+....+.+|++++|.|.+.+   .|.+.|.|++++....                              ...+..+..
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            3455778899999999999998   8889999999875431                              112222222


Q ss_pred             c-CeEEEEeeeccCCCeEEEEEEEeCCCCc-----eeEEEEEEeecc-CCeEEE-cCCceeecCCCeEEEEEeecCcCCC
Q psy11143        281 D-GFVLVLNGVRESDAGVYNCVAQNSEGSA-----ESVAMIRINGHR-APRLVV-KPFDMRAPAGSSVEIPCKPDGEPLP  352 (940)
Q Consensus       281 ~-g~sL~I~~v~~~DsG~YtC~A~N~~Gs~-----~~s~~l~V~~~~-~P~i~~-~p~~~~v~~G~~vtL~C~v~g~P~p  352 (940)
                      + ..+|.|.+++.+|+|.|+|.|.|..+..     ...+.|.|.... +|.+.. .+....+.+|++++|.|.+.+.|.|
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence            1 2359999999999999999999988754     346666665431 344443 3445677889999999999999999


Q ss_pred             eEEEEeCCeeeccC------------------------CcEEEeeeceEEEecCCCCCCeEEEEEEEe---CCeeEEEEE
Q psy11143        353 RISWSKDEAEFVED------------------------RNHKIHRTGSLRLYNIGPQDSGLYRCTASN---LLGEDVAEG  405 (940)
Q Consensus       353 ~i~W~k~g~~i~~~------------------------~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N---~~G~~~~s~  405 (940)
                      .|.|+|++..+...                        .+......++|.|.+++.+|+|.|+|.|.|   ..|....++
T Consensus       167 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~  246 (250)
T 2fbo_J          167 NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST  246 (250)
T ss_dssp             EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEE
T ss_pred             eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeE
Confidence            99999998766432                        112222336899999999999999999999   666667666


Q ss_pred             EEEE
Q psy11143        406 YLTV  409 (940)
Q Consensus       406 ~L~V  409 (940)
                      .|.|
T Consensus       247 ~l~V  250 (250)
T 2fbo_J          247 ILKV  250 (250)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            6654

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.80  E-value=2.8e-19  Score=187.34  Aligned_cols=181  Identities=15%  Similarity=0.170  Sum_probs=132.1

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEE-Eeece--EEEEcccccCCCeEEEEEEE
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY-EHDGF--VLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~-~~~gs--~L~I~~v~~~DsG~YtC~a~  119 (940)
                      ..+|.+...|. ..+.+|++|+|.|.+.+ +.+.|.|+|+|..+........ ..++.  .|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            35788888887 57899999999999987 6789999999876643221111 12333  67999999999999999999


Q ss_pred             eCCCceEE--EEEEEEecc-cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEe
Q psy11143        120 NSEGSAES--VAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY  196 (940)
Q Consensus       120 n~~g~~~~--~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~  196 (940)
                      |..+....  ...|.|.+. +.|.+...+ ...+.+|++++|.|.+.+.|.+.+.|+|+|..+... .......+.|.|.
T Consensus        85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~~~~~~~~~L~I~  162 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQSGEHPANFSLG  162 (218)
T ss_dssp             ETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEECSSSEEEECC
T ss_pred             cCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-ccCCCccCEEEEc
Confidence            98764433  456666653 345665555 567899999999997777788899999999876542 1112235679999


Q ss_pred             ecccCCCceEEEEEEcCCc-----ceeeeeeeeecC
Q psy11143        197 NIGPQDSGLYRCTASNLLG-----EDVAEGYLTVTG  227 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~g-----~~s~s~~L~V~~  227 (940)
                      +++.+|+|.|+|.|.|...     ..+..+.|.|..
T Consensus       163 ~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          163 PVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             SCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             cCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            9999999999999998532     233445566653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.80  E-value=4.9e-19  Score=181.86  Aligned_cols=177  Identities=18%  Similarity=0.295  Sum_probs=136.7

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccc-------------------cCceEEeeeceEEEeecccCCC
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE-------------------DRNHKIHRTGSLRLYNIGPQDS  203 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~-------------------~~~~~~~~~~sL~I~~v~~~Ds  203 (940)
                      +.+.+..+.+|++++|.|.+.+.+.+.+.|++++.....                   ..+..+..+++|.|.+++.+|+
T Consensus         4 i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~   83 (208)
T 3r4d_A            4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDM   83 (208)
T ss_dssp             EEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGC
T ss_pred             ccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCC
Confidence            344456788999999999988888899999986542211                   2233444456899999999999


Q ss_pred             ceEEEEEEcCC-cceeeeeeeeecCCC--CeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEee
Q psy11143        204 GLYRCTASNLL-GEDVAEGYLTVTGAP--PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH  280 (940)
Q Consensus       204 G~YtC~a~N~~-g~~s~s~~L~V~~~~--p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~  280 (940)
                      |.|+|.+.+.. +.......|.|...+  |.+...+..  +..|+.+.|.|.+.+.| |.+.|++++..+....++.+..
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~  160 (208)
T 3r4d_A           84 GVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQ  160 (208)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEET
T ss_pred             eEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcC
Confidence            99999999984 556667777776432  444444433  88999999999999976 7999999999999888888877


Q ss_pred             cCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCC
Q psy11143        281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP  323 (940)
Q Consensus       281 ~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P  323 (940)
                      .+.+|.|.++..+|+|.|+|.|.|..|..... .+.+.+..+|
T Consensus       161 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~-~~~l~v~~~~  202 (208)
T 3r4d_A          161 NNSILRIDPIKREDAGEYQCEISNPVSVRRSN-SIKLDIIFDP  202 (208)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEECTTCCEECC-CEEECCC---
T ss_pred             CCCEEEEeccCHHhCeEEEEEEecCCCcccCC-ceeeeEEeCC
Confidence            76779999999999999999999999987643 3455443444

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.80  E-value=9.4e-19  Score=180.89  Aligned_cols=172  Identities=17%  Similarity=0.147  Sum_probs=126.0

Q ss_pred             eEEecCCeEEEEEEEeeeCCCeEEEEECC-eecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        239 TTYSTGSTSRITCLVEGHPLPQMTWFHDG-NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       239 ~~v~~G~~v~L~C~v~G~P~p~ItW~k~g-~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      ..+.+|+.++|.|.+.|.|.|.|.|++.. ..+  .........+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V   88 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEE
Confidence            34459999999999999999999999843 222  122222333445999999999999999999999887777777777


Q ss_pred             eeccCCeEEEcCCceeecCCCeEEEEEeecCcCC---CeEEEEeCCeeeccCCcE-------EEeeeceEEEecCCCCCC
Q psy11143        318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNH-------KIHRTGSLRLYNIGPQDS  387 (940)
Q Consensus       318 ~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~---p~i~W~k~g~~i~~~~~~-------~i~~~~sL~I~~v~~~D~  387 (940)
                      .. .|+.+...+. ..+.+|+.++|.|.+.|.|+   +.|+|+|++..+......       .......|.|.....+|.
T Consensus        89 ~~-~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~  166 (202)
T 1vca_A           89 YS-FPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIG  166 (202)
T ss_dssp             EB-CCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTT
T ss_pred             Ee-CCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCC
Confidence            64 2222333333 56889999999999998643   379999999877532110       011234578888888899


Q ss_pred             eEEEEEEEeCCee-------EEEEEEEEEecCCC
Q psy11143        388 GLYRCTASNLLGE-------DVAEGYLTVTGENS  414 (940)
Q Consensus       388 G~YtC~A~N~~G~-------~~~s~~L~V~~~~~  414 (940)
                      |.|+|.|.|..|.       .+.+..|.|..+|.
T Consensus       167 g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          167 KVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             CeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            9999999999886       45677888887653

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.80  E-value=4.3e-19  Score=184.33  Aligned_cols=175  Identities=17%  Similarity=0.252  Sum_probs=129.0

Q ss_pred             CCCcEEEecC--CeEEEEEEeeccCCCeEEEEEC---CEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         51 RPVSTTYSTG--STSRITCLVEGHPLPQMTWFHD---GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        51 ~p~~~~V~eG--esv~L~C~v~g~P~p~V~W~kd---g~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      +|..+.+.+|  +.++|.|.+.+ |.+.|+|+++   +..+.......+...+ .|.|.+++.+|+|.|+|.|.|..+..
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~-~l~I~~v~~~D~G~Y~C~a~n~~~~~   90 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK-GFTIPSYMISYAGMVFCEAKINDESY   90 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT-EEEEEGGGTTTCSEEEEEEC----CE
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc-cEEEccCChhcCceEEEEEEECCeeE
Confidence            4578899999  99999999986 7789999884   6666655444444333 46999999999999999999855443


Q ss_pred             EE-EEEEEEecccCCeeEecCCc-eeecCCCcEEEEEEeCCCC--CCeEEEeeCCeeccccCc-e-E---------Eeee
Q psy11143        126 ES-VAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEP--LPRISWSKDEAEFVEDRN-H-K---------IHRT  190 (940)
Q Consensus       126 ~~-~~~L~V~~~~~P~~~~~p~~-~~v~~Ge~vtL~C~v~g~P--~p~ItW~k~g~~i~~~~~-~-~---------~~~~  190 (940)
                      .+ ...|.|.....|.+...+.. ..+.+|++++|.|.+.|.|  .+.+.|++++..+..... . .         ....
T Consensus        91 ~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  170 (213)
T 2x1w_L           91 QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL  170 (213)
T ss_dssp             ECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEE
T ss_pred             EEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeee
Confidence            33 25666654334555555544 4899999999999999854  458999998876432111 0 0         2224


Q ss_pred             ceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecC
Q psy11143        191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  227 (940)
Q Consensus       191 ~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~  227 (940)
                      ++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence            4799999999999999999999999999999999883

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.80  E-value=2.2e-19  Score=184.10  Aligned_cols=168  Identities=14%  Similarity=0.237  Sum_probs=122.3

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe-EEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-TYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~-~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...|.. .+.+|++++|.|.+.+.|. .|.|+|+|..+...... .....+..|.|.+++.+|+|.|+|.+.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A            4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            46788877774 7999999999999998776 79999999876421111 111334567999999999999999999987


Q ss_pred             -C--ceEEEEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCce-EEe----eeceE
Q psy11143        123 -G--SAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIH----RTGSL  193 (940)
Q Consensus       123 -g--~~~~~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~-~~~----~~~sL  193 (940)
                       |  .....+.|.|...+ .|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|++..+...... ...    ..+.|
T Consensus        82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L  159 (198)
T 1ugn_A           82 AGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIF  159 (198)
T ss_dssp             TEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEE
T ss_pred             CCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEE
Confidence             4  22345667776633 45555444 4678899999999999988 7799999998876432211 111    13689


Q ss_pred             EEeecccCCCceEEEEEEcCCc
Q psy11143        194 RLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       194 ~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      .|.+++.+|+|.|+|.|.|..+
T Consensus       160 ~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          160 SVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EECCCCTTSCEEEEEEEECTTS
T ss_pred             EecccCcccCeEEEEEEEeCCC
Confidence            9999999999999999999765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.80  E-value=4e-19  Score=178.55  Aligned_cols=169  Identities=18%  Similarity=0.206  Sum_probs=130.9

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC-eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p-~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .+|.+...+....+.+|++++|.|.+.+.|.+ .+.|++++..+...        +.+|.|.+++.+|+|.|+|.+.|..
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~~~~   74 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET--------NSSLNIVNAKFEDSGEYKCQHQQVN   74 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC--------SSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC--------ceEEEEeccceecCEEEEEEcCCcc
Confidence            35666777777889999999999999998876 79999999987643        3459999999999999999999866


Q ss_pred             CCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCC
Q psy11143        307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ  385 (940)
Q Consensus       307 Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~  385 (940)
                      ++.  .+.+.|.  .++.+... ....+.+|++++|.|.+. +.|.+.+.|+++|..+...     ...+.|.|.++..+
T Consensus        75 ~s~--~~~l~V~--~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-----~~~~~L~i~~v~~~  144 (176)
T 1f2q_A           75 ESE--PVYLEVF--SDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-----YENHNISITNATVE  144 (176)
T ss_dssp             CCC--CEEEEEE--CSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-----CCSSEEEESSCCGG
T ss_pred             ccc--cEEEEEe--CcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-----cCCCeEEECCCCcc
Confidence            544  3455554  34444433 345788999999999995 6677799999999887422     13568999999999


Q ss_pred             CCeEEEEEEEeCCe-eEEEEEEEEEecCCC
Q psy11143        386 DSGLYRCTASNLLG-EDVAEGYLTVTGENS  414 (940)
Q Consensus       386 D~G~YtC~A~N~~G-~~~~s~~L~V~~~~~  414 (940)
                      |+|.|+|.|.|..| ..+..+.|.|..+|.
T Consensus       145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          145 DSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             cCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            99999999999755 445568899988753

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.80  E-value=9.3e-19  Score=180.93  Aligned_cols=181  Identities=16%  Similarity=0.190  Sum_probs=127.0

Q ss_pred             EecCCcee-ecCCCcEEEEEEeCCCCCCeEEEeeCC-eeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceee
Q psy11143        142 VVKPFDMR-APAGSSVEIPCKPDGEPLPRISWSKDE-AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA  219 (940)
Q Consensus       142 ~~~p~~~~-v~~Ge~vtL~C~v~g~P~p~ItW~k~g-~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~  219 (940)
                      .+.|.+.. +.+|++++|.|.+.|.|.|.+.|++.. ..+. .........+.|.|.+++.+|+|.|+|.|.|..+..+.
T Consensus         4 ~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A            4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             EEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             EECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            34444444 459999999999999999999999843 2221 11111112346999999999999999999999888888


Q ss_pred             eeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCC---CeEEEEECCeecCCCCceE------EeecCeEEEEeee
Q psy11143        220 EGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNSLDSDDHVT------YEHDGFVLVLNGV  290 (940)
Q Consensus       220 s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~---p~ItW~k~g~~l~~~~~~~------~~~~g~sL~I~~v  290 (940)
                      .+.|.|...+......+. ..+.+|+.++|.|.+.|.++   ++|+|+|++..+.......      .......|.|...
T Consensus        83 ~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~  161 (202)
T 1vca_A           83 GIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV  161 (202)
T ss_dssp             EEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC
T ss_pred             EEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEee
Confidence            888999855544444333 66889999999999998643   3799999998875321100      0111223678888


Q ss_pred             ccCCCeEEEEEEEeCCCCce-----eEEEEEEeeccCCe
Q psy11143        291 RESDAGVYNCVAQNSEGSAE-----SVAMIRINGHRAPR  324 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~Gs~~-----~s~~l~V~~~~~P~  324 (940)
                      ..+|.|.|+|+|.|..+...     ....+.+.+.++|.
T Consensus       162 ~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          162 IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             GGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             eccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            88999999999999987632     33344444446664

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.80  E-value=1.4e-18  Score=174.59  Aligned_cols=165  Identities=13%  Similarity=0.229  Sum_probs=129.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCe-EEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~-V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...|....+.+|+.++|.|.+.+.|.+. +.|+|+|..+..        ....|.|.+++.+|+|.|+|.+.|..
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~~~n~~   77 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQTNLST   77 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--------CceEEEEeCCCcccCEEEEEEeeCCc
Confidence            467888888888999999999999999988765 889999988763        34467999999999999999999855


Q ss_pred             CceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCC-eEEEeeCCeeccccCceEEeeeceEEEeecccC
Q psy11143        123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ  201 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p-~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~  201 (940)
                      +.  ....|.|.  ..+. ...+....+.+|+.++|.|.+.+.+++ .+.|++++..+..     ......|.|.+++.+
T Consensus        78 ~s--~~~~l~V~--~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-----~~~~~~L~i~~v~~~  147 (175)
T 1fnl_A           78 LS--DPVQLEVH--IGWL-LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-----FHHNSDFHIPKATLK  147 (175)
T ss_dssp             CC--CCEEEEEE--CSSE-EEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-----EEECCCEEESSCCGG
T ss_pred             cc--ccEEEEEe--CCCc-eeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-----CCCCCEEEEcccChh
Confidence            53  34455554  2333 333445678899999999999987665 9999999987732     224568999999999


Q ss_pred             CCceEEEEEEcCCcc-eeeeeeeeec
Q psy11143        202 DSGLYRCTASNLLGE-DVAEGYLTVT  226 (940)
Q Consensus       202 DsG~YtC~a~N~~g~-~s~s~~L~V~  226 (940)
                      |+|.|+|.|.|..+. .+..+.|.|.
T Consensus       148 d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          148 DSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             hCeEEEEEEEcCCCCccCccEEEEEe
Confidence            999999999997554 4555666664

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.80  E-value=2.6e-19  Score=183.50  Aligned_cols=179  Identities=14%  Similarity=0.188  Sum_probs=126.9

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCc-eEEeecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~-~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .+|.+...|. ..+.+|++++|.|.+.+.|. .+.|+|+|..+..... ......+..|.|.++..+|+|.|+|.|.|..
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            4566666565 47889999999999998875 7999999987742111 1112234569999999999999999999987


Q ss_pred             -C--CceeEEEEEEee-ccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCc-EEEe----eeceE
Q psy11143        307 -G--SAESVAMIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN-HKIH----RTGSL  377 (940)
Q Consensus       307 -G--s~~~s~~l~V~~-~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~-~~i~----~~~sL  377 (940)
                       |  ..+..+.|.|.. ..+|.+...+ ...+.+|++++|.|.+.+. .+.|.|+|+|..+..... ....    ..+.|
T Consensus        82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L  159 (198)
T 1ugn_A           82 AGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIF  159 (198)
T ss_dssp             TEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEE
T ss_pred             CCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEE
Confidence             5  334556677765 2356666554 3578899999999999988 789999999987643321 1111    13689


Q ss_pred             EEecCCCCCCeEEEEEEEeCCeeE-----EEEEEEEEe
Q psy11143        378 RLYNIGPQDSGLYRCTASNLLGED-----VAEGYLTVT  410 (940)
Q Consensus       378 ~I~~v~~~D~G~YtC~A~N~~G~~-----~~s~~L~V~  410 (940)
                      .|.+++.+|+|.|+|.|.|..+..     +..+.|.|.
T Consensus       160 ~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          160 SVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            999999999999999999987622     344555554

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.80  E-value=2.4e-19  Score=181.99  Aligned_cols=159  Identities=18%  Similarity=0.226  Sum_probs=124.3

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .+|.+...+.. .+.+|++++|.|.+.+ |.+.+.|+|+|..        ....+..|.|.++..+|+|.|+|.|.|..|
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   76 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS--------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSL   76 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC--------CEESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc--------ccCcccEEEECcCChhhCceEEEEEEcCCC
Confidence            45666666654 7899999999999988 7889999999875        122344699999999999999999999876


Q ss_pred             Cc--eeEEEEEEee-ccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCC
Q psy11143        308 SA--ESVAMIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP  384 (940)
Q Consensus       308 s~--~~s~~l~V~~-~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~  384 (940)
                      ..  +..+.|.|.. ..+|.+...+ ...+.+|++++|.|.+.+.| +.+.|+|+|..+..... .....+.|.|.+++.
T Consensus        77 ~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~-~~~~~~~L~i~~v~~  153 (184)
T 2gi7_A           77 WSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP-ERWYRASFPIITVTA  153 (184)
T ss_dssp             EBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC-CEEEEESSSEEEETT
T ss_pred             ccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec-CCCceEEEEEccCCc
Confidence            33  3345666654 2467777666 45788999999999988665 69999999987654322 233466899999999


Q ss_pred             CCCeEEEEEEEeCCe
Q psy11143        385 QDSGLYRCTASNLLG  399 (940)
Q Consensus       385 ~D~G~YtC~A~N~~G  399 (940)
                      +|+|.|+|.|.|..+
T Consensus       154 ~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          154 AHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CCSEEEEEEEECTTS
T ss_pred             cCCeEEEEEEEeCCC
Confidence            999999999999754

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.79  E-value=1e-18  Score=180.92  Aligned_cols=166  Identities=18%  Similarity=0.259  Sum_probs=130.6

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCCCCCCe-EEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCc
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~-ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      +.|.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+....       +.|.|.+++.+|+|.|+|.+.|.  
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-------~~L~i~~v~~~D~G~Y~C~a~n~--   76 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------SSYFIDAATVDDSGEYRCQTQLS--   76 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-------SEEEESSCCGGGCEEEEEEETTS--
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-------cEEEEecccccCCEEEEEEeCCC--
Confidence            456777888778899999999999999988775 99999998876542       68999999999999999999874  


Q ss_pred             ceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeee-CCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCC
Q psy11143        216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD  294 (940)
Q Consensus       216 ~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~D  294 (940)
                      ..+..+.|.|. .++.+...+. ..+.+|+.++|.|.+.+. |.+.++|+|+|..+..      ...+..|.|.++..+|
T Consensus        77 ~~s~~~~l~V~-~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~------~~~~~~L~i~~v~~~D  148 (204)
T 3sgj_C           77 TLSDPVQLEVH-IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY------FHHNSDFYIPKATLKD  148 (204)
T ss_dssp             BCCCCEEEEEE-CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------EEECCCEEESSCCGGG
T ss_pred             cccccEEEEEe-cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec------ccCCceEEECcCCccc
Confidence            44556677777 3444444443 778899999999999765 5689999999987632      2233459999999999


Q ss_pred             CeEEEEEEEeC-CCCceeEEEEEEee
Q psy11143        295 AGVYNCVAQNS-EGSAESVAMIRING  319 (940)
Q Consensus       295 sG~YtC~A~N~-~Gs~~~s~~l~V~~  319 (940)
                      +|.|+|.|.|. .+..+..+.|.|..
T Consensus       149 ~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          149 SGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CEEEEEEEEeCCCceecCcEEEEEeC
Confidence            99999999994 34444556666654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.79  E-value=3.1e-19  Score=183.27  Aligned_cols=174  Identities=20%  Similarity=0.291  Sum_probs=130.8

Q ss_pred             cCCceeecCCCcEEEEEEeCCCC----CCeEEEeeC----------------Ceeccc-----cCceEEee------ece
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEP----LPRISWSKD----------------EAEFVE-----DRNHKIHR------TGS  192 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P----~p~ItW~k~----------------g~~i~~-----~~~~~~~~------~~s  192 (940)
                      .+..+.+.+|++++|.|.+.+.+    .+.+.|+++                +..+..     ..+..+..      +.+
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            34566788999999999999876    469999983                322221     22333322      457


Q ss_pred             EEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEE-eeeCCCeEEEEECCeecC
Q psy11143        193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLD  271 (940)
Q Consensus       193 L~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v-~G~P~p~ItW~k~g~~l~  271 (940)
                      |.|.+++.+|+|.|+|.+.|..+..+..+.|.|.. +|.+...+....+..|+.+.|.|.+ .|.|.|.++|++++....
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~  164 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQT  164 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCC
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc-CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCc
Confidence            99999999999999999999998888888899884 4444333344457889999999999 899999999999643322


Q ss_pred             CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       272 ~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      ..........+.+|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       165 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          165 MPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             CCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             cCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            22121222233469999999999999999999999999877777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.79  E-value=4.4e-20  Score=206.88  Aligned_cols=198  Identities=21%  Similarity=0.265  Sum_probs=154.8

Q ss_pred             CCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccC-ceEEe
Q psy11143        110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKIH  188 (940)
Q Consensus       110 DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~-~~~~~  188 (940)
                      +.|.|+|.+.+....      +.+..-.+|.+...+....+.+|+++.|.|.+.|.|.+.+.|++++..+.... .....
T Consensus       136 ~~~~~~C~~~~~l~~------l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~  209 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAH------MPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL  209 (347)
T ss_dssp             GGGCCCCSSSSCSSC------CCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCS
T ss_pred             cccCCCCCCChHHhc------CCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceec
Confidence            578999988762221      11223346788888888999999999999999999999999999887653321 12233


Q ss_pred             eeceEEEeecccCCCc-eEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC
Q psy11143        189 RTGSLRLYNIGPQDSG-LYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG  267 (940)
Q Consensus       189 ~~~sL~I~~v~~~DsG-~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g  267 (940)
                      ..++|.|.+++.+|+| .|+|.|.|..|..+..+.|.|. .+|.+    ....+.+|+.++|.|.+.|.|.|.|+|+++|
T Consensus       210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~-~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g  284 (347)
T 2ifg_A          210 PSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS-FPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG  284 (347)
T ss_dssp             SEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCB-EEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETT
T ss_pred             ccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEc-CCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCC
Confidence            4568999999999999 9999999999988888888887 44443    1223457999999999999999999999999


Q ss_pred             eecCCCCceEEe--e-------cCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        268 NSLDSDDHVTYE--H-------DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       268 ~~l~~~~~~~~~--~-------~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      ..+.........  .       ...+|.|.++..+|+|.|+|.|.|..|..+.++.+.|.
T Consensus       285 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             EECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             EECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            999865543321  1       13359999999999999999999999988877766664

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.79  E-value=2.6e-19  Score=183.40  Aligned_cols=169  Identities=15%  Similarity=0.217  Sum_probs=116.2

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCce-EEeecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-TYEHDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~-~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .+|.+...|. ..+.+|++++|.|.+.+.|. .+.|+|++..+...... .....+..|.|.++..+|+|.|+|.|.|..
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            3456666565 47889999999999988765 99999999877532111 112234569999999999999999999987


Q ss_pred             CCce--eEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcE-EE----eeeceEE
Q psy11143        307 GSAE--SVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KI----HRTGSLR  378 (940)
Q Consensus       307 Gs~~--~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~-~i----~~~~sL~  378 (940)
                      |...  ..+.|.|... .+|.+...+ ...+.+|++++|.|.+.+.| +.|.|+|+|..+...... ..    ...++|.
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~  159 (196)
T 2d3v_A           82 GWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFP  159 (196)
T ss_dssp             EECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEE
T ss_pred             CcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEE
Confidence            6443  4456666542 256665544 35788999999999999999 999999999876432111 11    1236899


Q ss_pred             EecCCCCCCeEEEEEEEeCCee
Q psy11143        379 LYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       379 I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      |.+++.+|+|.|+|.|.|..+.
T Consensus       160 I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          160 VGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             CCCCBTTBCEEEEEEEEETTEE
T ss_pred             eeecCcccCeeEEEEEEccCCC
Confidence            9999999999999999998764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.79  E-value=4e-19  Score=178.50  Aligned_cols=167  Identities=19%  Similarity=0.234  Sum_probs=128.0

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      |..+|.+...|....+.+|++++|.|.+.+.|.+ .+.|++++..+..        .+..|.|.+++.+|+|.|+|.+.|
T Consensus         1 v~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             ---CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC--------CceEEEEeccceecCEEEEEEcCC
Confidence            3457888889999899999999999999988775 7999999998763        245679999999999999999987


Q ss_pred             CCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEEeeeceEEEeecc
Q psy11143        121 SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG  199 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~  199 (940)
                      ..+..  .+.|.|.  ..+ +...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....     .++.|.|.+++
T Consensus        73 ~~~s~--~~~l~V~--~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-----~~~~L~i~~v~  142 (176)
T 1f2q_A           73 VNESE--PVYLEVF--SDW-LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNAT  142 (176)
T ss_dssp             SSCCC--CEEEEEE--CSS-EEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CSSEEEESSCC
T ss_pred             ccccc--cEEEEEe--Ccc-eeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-----CCCeEEECCCC
Confidence            65543  3445554  233 33334456788999999999995 67777999999998774321     24689999999


Q ss_pred             cCCCceEEEEEEcCCc-ceeeeeeeeec
Q psy11143        200 PQDSGLYRCTASNLLG-EDVAEGYLTVT  226 (940)
Q Consensus       200 ~~DsG~YtC~a~N~~g-~~s~s~~L~V~  226 (940)
                      .+|+|.|+|.|.|..+ ..+..+.|.|.
T Consensus       143 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          143 VEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cccCEEEEEEEEeCCcceEecCEEEEEe
Confidence            9999999999999644 34556777776

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.79  E-value=3.6e-19  Score=186.49  Aligned_cols=181  Identities=15%  Similarity=0.177  Sum_probs=131.4

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceE-EeecCe--EEEEeeeccCCCeEEEEEEEe
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT-YEHDGF--VLVLNGVRESDAGVYNCVAQN  304 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~-~~~~g~--sL~I~~v~~~DsG~YtC~A~N  304 (940)
                      .+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+....... ...++.  .|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   85 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   85 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence            4566666666 57899999999999987 678999999987664322111 112233  699999999999999999999


Q ss_pred             CCCCce--eEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEec
Q psy11143        305 SEGSAE--SVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN  381 (940)
Q Consensus       305 ~~Gs~~--~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~  381 (940)
                      ..|...  ....|.|... .+|.+...+ ...+.+|++++|.|.+.+.|.+.+.|+|+|..+... .......+.|.|.+
T Consensus        86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~~~~~~~~~L~I~~  163 (218)
T 1uct_A           86 GHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQSGEHPANFSLGP  163 (218)
T ss_dssp             TTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEECSSSEEEECCS
T ss_pred             CCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-ccCCCccCEEEEcc
Confidence            876433  3355666542 356676666 457899999999997777888999999999876542 22223456899999


Q ss_pred             CCCCCCeEEEEEEEeCCe-----eEEEEEEEEEecC
Q psy11143        382 IGPQDSGLYRCTASNLLG-----EDVAEGYLTVTGE  412 (940)
Q Consensus       382 v~~~D~G~YtC~A~N~~G-----~~~~s~~L~V~~~  412 (940)
                      ++.+|+|.|+|.|.|..+     ..+..+.|.|.+.
T Consensus       164 v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          164 VDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             CCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             CCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            999999999999998632     2334566777664

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.79  E-value=9e-19  Score=176.95  Aligned_cols=160  Identities=17%  Similarity=0.247  Sum_probs=127.3

Q ss_pred             eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCC--------------CCceEEee-----cCeEEEEeeeccCCCeEE
Q psy11143        238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS--------------DDHVTYEH-----DGFVLVLNGVRESDAGVY  298 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~--------------~~~~~~~~-----~g~sL~I~~v~~~DsG~Y  298 (940)
                      ...+.+|++++|.|.+.+.|.+.+.|++++..+..              ..+.....     ...+|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45788999999999999999999999999863211              12222221     133499999999999999


Q ss_pred             EEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEE
Q psy11143        299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR  378 (940)
Q Consensus       299 tC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~  378 (940)
                      +|.+.|..+    .+.+.|..     +.. +....+.+|++++|.|.+.+.|.|.+.|++++..+       ....++|.
T Consensus        84 ~C~~~~~~~----~~~l~V~~-----~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~-------~~~~~~L~  146 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFG-----LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTLS  146 (184)
T ss_dssp             EEEETTEEE----EEEEEEEE-----EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE-------EEESSEEE
T ss_pred             EEEEEcCCC----cEEEEEEE-----ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc-------ccCceEEE
Confidence            999988754    34455542     222 44457899999999999999999999999987654       23567899


Q ss_pred             EecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       379 I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      |.+++.+|+|.|+|.|.|..|..+.++.|.|.+.|.
T Consensus       147 i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          147 VSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  182 (184)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             EecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence            999999999999999999999999999999998753

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.79  E-value=9.1e-19  Score=185.03  Aligned_cols=175  Identities=15%  Similarity=0.259  Sum_probs=127.0

Q ss_pred             eCCCcEEEecCCeEEEEEEeec---cCCCeEEEEECCEeec------------------------------CCCCeEEEe
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLD------------------------------SDDHVTYEH   96 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g---~P~p~V~W~kdg~~I~------------------------------~~~~~~~~~   96 (940)
                      ..+..+.+.+|+.++|.|.+.+   .|.+.|.|+|++....                              ...+..+..
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            3445788999999999999987   7888999999875420                              011121111


Q ss_pred             -eceEEEEcccccCCCeEEEEEEEeCCCce-----EEEEEEEEeccc-CCeeEe-cCCceeecCCCcEEEEEEeCCCCCC
Q psy11143         97 -DGFVLVLNGVRESDAGVYNCVAQNSEGSA-----ESVAMIRINGHR-APRLVV-KPFDMRAPAGSSVEIPCKPDGEPLP  168 (940)
Q Consensus        97 -~gs~L~I~~v~~~DsG~YtC~a~n~~g~~-----~~~~~L~V~~~~-~P~~~~-~p~~~~v~~Ge~vtL~C~v~g~P~p  168 (940)
                       ....|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|...+ +|.+.. .+....+.+|+.+.|.|.+.+.|.|
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence             12358999999999999999999987753     346777776642 233333 3445778899999999999999999


Q ss_pred             eEEEeeCCeeccccC------------------------ceEEeeeceEEEeecccCCCceEEEEEEcCCc---ceeeee
Q psy11143        169 RISWSKDEAEFVEDR------------------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG---EDVAEG  221 (940)
Q Consensus       169 ~ItW~k~g~~i~~~~------------------------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g---~~s~s~  221 (940)
                      .|+|++++..+....                        +......+.|.|.+++.+|+|.|+|.|.|..|   ....++
T Consensus       167 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~  246 (250)
T 2fbo_J          167 NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST  246 (250)
T ss_dssp             EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEE
T ss_pred             eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeE
Confidence            999999887664321                        11111336899999999999999999999555   444444


Q ss_pred             eee
Q psy11143        222 YLT  224 (940)
Q Consensus       222 ~L~  224 (940)
                      .|.
T Consensus       247 ~l~  249 (250)
T 2fbo_J          247 ILK  249 (250)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=1.1e-18  Score=177.85  Aligned_cols=166  Identities=16%  Similarity=0.194  Sum_probs=123.3

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC-CeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...|.. .+.+|++|+|.|.+.+. .+.+.|+|+|..+.... .......+..|.|.+++.+|+|.|+|.+.|..
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   80 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence            36788888877 79999999999999764 46899999998764211 11111334568999999999999999999865


Q ss_pred             Cce--EEEEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecc
Q psy11143        123 GSA--ESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG  199 (940)
Q Consensus       123 g~~--~~~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~  199 (940)
                      +..  ...+.|.|.+.. .|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|++..+... .......+.|.|.+++
T Consensus        81 ~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~-~~~~~~~~~L~I~~v~  157 (188)
T 1oll_A           81 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ-RGYGKVQAEFPLGPVT  157 (188)
T ss_dssp             EECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEE-EEECSSEEEEEEEECC
T ss_pred             CCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCcccccc-ccCCCceeEEEECCCC
Confidence            432  235667776533 46666555 4568899999999998764 5689999998766541 1112235689999999


Q ss_pred             cCCCceEEEEEEcCC
Q psy11143        200 PQDSGLYRCTASNLL  214 (940)
Q Consensus       200 ~~DsG~YtC~a~N~~  214 (940)
                      .+|+|.|+|.|.|..
T Consensus       158 ~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          158 TAHRGTYRCFGSYNN  172 (188)
T ss_dssp             GGGCEEEEEECEEET
T ss_pred             cCCCcEEEEEEEcCC
Confidence            999999999999864

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.78  E-value=8.5e-19  Score=177.10  Aligned_cols=154  Identities=12%  Similarity=0.163  Sum_probs=119.4

Q ss_pred             eEEecCCeEEEEEEEee--eCCCeEEEEECCeecC----------CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        239 TTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSLD----------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       239 ~~v~~G~~v~L~C~v~G--~P~p~ItW~k~g~~l~----------~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      +.+.+|++++|.|...+  .|.+.|.|+|++..+.          ...++.+..++. |.|.+++.+|+|.|+|.|.|..
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gs-L~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD-LKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSC-EEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCc-EEEcccccccCEEEEEEEEeCC
Confidence            46778999999995433  5567999999986542          345666666666 9999999999999999999999


Q ss_pred             CCc--eeEEEEEEeecc-CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCC
Q psy11143        307 GSA--ESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG  383 (940)
Q Consensus       307 Gs~--~~s~~l~V~~~~-~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~  383 (940)
                      |..  ...+.|.|.... .|.+..        .+.+++|.|.+.|.|.|.|.|+|+|..+..+.+        +.|..+.
T Consensus        85 g~~~~~~~~~l~V~~~~~~p~i~~--------~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~--------~~i~~~~  148 (176)
T 1hng_A           85 GTRILNKALDLRILEMVSKPMIYW--------ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ--------KTMSYQW  148 (176)
T ss_dssp             CCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEETTEEEEEESS--------SEEEEEC
T ss_pred             CCEEEEEEEEEEEeCCCCCCEEEe--------cCCcEEEEEEecCCCCcEEEEEECCEECCCCCc--------EEEEEEE
Confidence            987  555666665422 233322        244699999999999999999999988754433        4455778


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        384 PQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       384 ~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      .+|+|.|+|.|.|..|...+.+.|.+
T Consensus       149 ~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          149 TNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             SCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             ccCCeEEEEEEEecCCCceecccccC
Confidence            99999999999999999988877654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=6.9e-19  Score=179.21  Aligned_cols=177  Identities=16%  Similarity=0.176  Sum_probs=126.8

Q ss_pred             CCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCC-ceEEeecCeEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~-~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      +|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+.... .......+..|.|.+++.+|+|.|+|.+.|..+
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   81 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence            4566666655 7899999999999875 346899999998764211 111112334599999999999999999998754


Q ss_pred             Cc--eeEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCC
Q psy11143        308 SA--ESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP  384 (940)
Q Consensus       308 s~--~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~  384 (940)
                      ..  +..+.|.|... .+|.+...| ...+.+|++++|.|.+.+ +.+.+.|+|+|..+... .......++|.|.+++.
T Consensus        82 ~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-~~~~~~~~~L~I~~v~~  158 (188)
T 1oll_A           82 WSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ-RGYGKVQAEFPLGPVTT  158 (188)
T ss_dssp             ECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE-EEECSSEEEEEEEECCG
T ss_pred             CCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCcccccc-ccCCCceeEEEECCCCc
Confidence            33  34456666542 367777666 456889999999999876 45799999998766431 11223456899999999


Q ss_pred             CCCeEEEEEEEeCCe---eEEEEEEEEEe
Q psy11143        385 QDSGLYRCTASNLLG---EDVAEGYLTVT  410 (940)
Q Consensus       385 ~D~G~YtC~A~N~~G---~~~~s~~L~V~  410 (940)
                      +|+|.|+|.|.|...   ..+..+.|.|.
T Consensus       159 ~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          159 AHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             GGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            999999999999641   22334555554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.78  E-value=2.6e-18  Score=176.12  Aligned_cols=178  Identities=13%  Similarity=0.184  Sum_probs=131.3

Q ss_pred             eCCCeeEEecCCeEEEEEEEeeeCCC---eEEEEECCeecCCCC------------------ceEEee-----cCeEEEE
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDSDD------------------HVTYEH-----DGFVLVL  287 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~P~p---~ItW~k~g~~l~~~~------------------~~~~~~-----~g~sL~I  287 (940)
                      ..|..+.+..|++++|.|.+.+.|.+   .|+|+|++..+....                  ++....     ...+|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            34667889999999999999998876   489999876543211                  111111     1134999


Q ss_pred             eeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC
Q psy11143        288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR  367 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~  367 (940)
                      .+++.+|+|.|+|.+.+..+.........+....++.....+....+..|+.+.+.|.+.|.|.|.|+|++++..+....
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~  163 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR  163 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence            99999999999999998777655443333322234444445556678889999999999999999999999988765433


Q ss_pred             cEEE----eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        368 NHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       368 ~~~i----~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      ....    ...+.|.|.++..+|+|.|+|.|+|..|.....+.|.|..
T Consensus       164 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          164 SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            2221    2245799999999999999999999999888777776643

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=9.5e-18  Score=169.04  Aligned_cols=162  Identities=22%  Similarity=0.387  Sum_probs=126.9

Q ss_pred             EEEecCCeEEEEEEeeccCCC--eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143         55 TTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g~P~p--~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~  132 (940)
                      ..+.+|+.++|.|.+.+.|.+  .+.|+|+|..+......   .....|.|.  +.+|+|.|+|.+.|..   ...+.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~l~   79 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTANIQ   79 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---CCcEEEEEe--chhhCeEEEEEEECCc---CcEEEEE
Confidence            567899999999999987777  99999999988754322   123345666  6999999999999832   2345566


Q ss_pred             EecccCCeeEecCCceeecCCCcEEEEEEeCCCC-CCeEEEee---CCeecc-c--cCceEEeeec---eEEEeecc-cC
Q psy11143        133 INGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSK---DEAEFV-E--DRNHKIHRTG---SLRLYNIG-PQ  201 (940)
Q Consensus       133 V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P-~p~ItW~k---~g~~i~-~--~~~~~~~~~~---sL~I~~v~-~~  201 (940)
                      |.  .+|.+...+....+.+|+.++|.|.+.+.| .+.+.|++   ++..+. .  ..++.+...+   .|.|.+++ .+
T Consensus        80 V~--~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~  157 (184)
T 3b5h_A           80 LH--GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA  157 (184)
T ss_dssp             EC--CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTT
T ss_pred             Ee--cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccc
Confidence            64  456777777778899999999999999999 79999999   444332 2  2445444333   79999999 89


Q ss_pred             CCceEEEEEEcCCcceeeeeeeeec
Q psy11143        202 DSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       202 DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      |+|.|+|.|.|..|.....+.|.|.
T Consensus       158 d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          158 DPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCceEEEEEEeCCCcceEEEEEEEe
Confidence            9999999999999998888888775

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.78  E-value=1.4e-18  Score=186.02  Aligned_cols=197  Identities=17%  Similarity=0.297  Sum_probs=126.8

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEee---ccCCCeEEEEECCEeecCC------------------CCeEEEe----eceE
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVE---GHPLPQMTWFHDGNSLDSD------------------DHVTYEH----DGFV  100 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~---g~P~p~V~W~kdg~~I~~~------------------~~~~~~~----~gs~  100 (940)
                      +.+...+..+.+.+|+.++|.|.+.   +.|.+.|.|+|++......                  .+..+..    ....
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            4556677788999999999999997   6777899999966432211                  2222211    1145


Q ss_pred             EEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEe---CCCCCCeEEEeeCCe
Q psy11143        101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP---DGEPLPRISWSKDEA  177 (940)
Q Consensus       101 L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v---~g~P~p~ItW~k~g~  177 (940)
                      |.|.+++.+|+|.|+|.+.+..+.......+.+.+.+     ..|....+.+|++++|.|.+   .+.|.+.++|++++.
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~  160 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSG  160 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECT
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCC
Confidence            7999999999999999999987665444444443321     23446778899999999999   678999999999432


Q ss_pred             ec-ccc---------------------CceEE-----eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCC
Q psy11143        178 EF-VED---------------------RNHKI-----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP  230 (940)
Q Consensus       178 ~i-~~~---------------------~~~~~-----~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p  230 (940)
                      .. ...                     .+..+     ...++|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p  240 (268)
T 3mj6_A          161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF  240 (268)
T ss_dssp             TCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC--
T ss_pred             CCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCC
Confidence            11 100                     01111     2345799999999999999999999999999999999977888


Q ss_pred             eeeeCCCeeEEecCCeE
Q psy11143        231 IFIQRPVSTTYSTGSTS  247 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v  247 (940)
                      .+...|....+..|+.+
T Consensus       241 ~~~~~p~~~~~~~~q~~  257 (268)
T 3mj6_A          241 QRTISPTPPTDKGQQGI  257 (268)
T ss_dssp             -----------------
T ss_pred             eeeeCCCCCCCCcceec
Confidence            88888887777777654

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.77  E-value=4.8e-18  Score=168.92  Aligned_cols=163  Identities=17%  Similarity=0.286  Sum_probs=126.5

Q ss_pred             CeeeeCCCeeEEecCCeEEEEEEEeeeC-CCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        230 PIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       230 p~~~~~p~~~~v~~G~~v~L~C~v~G~P-~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      |.+...+....+.+|+.+.|.|.+.+.| .+.+.|+++|..+.....        .+.|.++..+|+|.|+|.+.|...+
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~--------~~~~~~~~~~d~G~Y~C~~~~~~~s   76 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------PSYRFKANNNDSGEYTCQTGQTSLS   76 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS--------SEEEEECCGGGCEEEEEEETTSBCC
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc--------ceEEEecccccCeEEEEEEeCCCce
Confidence            4555667777889999999999999987 579999999998875422        2678899999999999999975444


Q ss_pred             ceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCC
Q psy11143        309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS  387 (940)
Q Consensus       309 ~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~  387 (940)
                      .  .+.|.|.  .+|.+...+ ...+.+|++++|.|.+. +.|.+.+.|++++..+...     ...+.|.|.++..+|+
T Consensus        77 ~--~~~l~v~--~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-----~~~~~L~i~~v~~~d~  146 (170)
T 3ry4_A           77 D--PVHLTVL--FEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS-----HLDPTFSIPQANHSHS  146 (170)
T ss_dssp             C--CEEEEEE--CCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-----SSCCEEEESSCCGGGC
T ss_pred             E--eEEEEEE--CCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc-----CCCCeEEEEeccccCC
Confidence            3  3455554  355444443 56788999999999995 5577899999999876421     2356899999999999


Q ss_pred             eEEEEEEEeCCee-EEEEEEEEEe
Q psy11143        388 GLYRCTASNLLGE-DVAEGYLTVT  410 (940)
Q Consensus       388 G~YtC~A~N~~G~-~~~s~~L~V~  410 (940)
                      |.|+|.|.|..|. .+..+.|.|+
T Consensus       147 G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          147 GDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEEEeCcCccccccEEEEEC
Confidence            9999999999997 4445666653

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.77  E-value=3.9e-18  Score=174.81  Aligned_cols=177  Identities=14%  Similarity=0.193  Sum_probs=129.7

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC---eEEEEECCEeecCCC------------------CeEEE-----eeceEEEE
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDSDD------------------HVTYE-----HDGFVLVL  103 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p---~V~W~kdg~~I~~~~------------------~~~~~-----~~gs~L~I  103 (940)
                      ..|..++|.+|++++|.|.+.+.|.+   .|+|+|++..+....                  +..+.     .....|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            45677889999999999999987765   489999875432111                  11111     01234799


Q ss_pred             cccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccC
Q psy11143        104 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR  183 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~  183 (940)
                      .+++.+|+|.|+|.+.+..+.........+...+.+..........+..|+.+.+.|.+.+.|.|.|+|++++..+....
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~  163 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR  163 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence            99999999999999998777655533333323333444555666778899999999999999999999999988775433


Q ss_pred             ceE----EeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        184 NHK----IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       184 ~~~----~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      ...    ....+.|.|.++..+|+|.|+|.|+|..|..+..+.+.|.
T Consensus       164 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          164 SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            222    1224579999999999999999999999987766666554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.77  E-value=3.5e-18  Score=176.52  Aligned_cols=173  Identities=16%  Similarity=0.263  Sum_probs=128.8

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC--CeecC------------CCCceEEee--cCeEEEEeeeccCCC
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD------------SDDHVTYEH--DGFVLVLNGVRESDA  295 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~--g~~l~------------~~~~~~~~~--~g~sL~I~~v~~~Ds  295 (940)
                      +...+ ...+.+|++++|.|.+.+.|.+.+.|+|.  +....            ...++.+..  ...+|.|.+++.+|+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE   82 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence            33445 77899999999999999999999999983  22110            223444322  234599999999999


Q ss_pred             eEEEEEEEeCCC---CceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CC-CeEEEEeCCeeeccCC-
Q psy11143        296 GVYNCVAQNSEG---SAESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEAEFVEDR-  367 (940)
Q Consensus       296 G~YtC~A~N~~G---s~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~-p~i~W~k~g~~i~~~~-  367 (940)
                      |.|+|.|.|..+   .......|.|..  ..+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+|+|..+..+. 
T Consensus        83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  162 (213)
T 3mj8_L           83 ADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVK  162 (213)
T ss_dssp             EEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             EEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcc
Confidence            999999999988   334445666653  257888777766666689999999999986 44 3999999999886421 


Q ss_pred             -------cEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        368 -------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       368 -------~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                             .......+.|.|..+..+|.|.|+|.|.|..|....++
T Consensus       163 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          163 TTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             ECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence                   11112245699999999999999999999998776654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.77  E-value=3.9e-18  Score=176.14  Aligned_cols=174  Identities=17%  Similarity=0.265  Sum_probs=127.8

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeec------------CCCCeEEE--eeceEEEEcccccCC
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD------------SDDHVTYE--HDGFVLVLNGVRESD  110 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~------------~~~~~~~~--~~gs~L~I~~v~~~D  110 (940)
                      .+...| .+.+.+|++++|.|.+.+.|.+.|.|+|.  +....            ...++.+.  .....|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD   81 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence            344555 78899999999999999999999999982  22110            12233332  223458999999999


Q ss_pred             CeEEEEEEEeCCCc---eEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CC-CeEEEeeCCeecccc-
Q psy11143        111 AGVYNCVAQNSEGS---AESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEAEFVED-  182 (940)
Q Consensus       111 sG~YtC~a~n~~g~---~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~-p~ItW~k~g~~i~~~-  182 (940)
                      +|.|+|.|.+..+.   ....+.|.|...  .+|.+...+....+.+|+.++|.|.+.+. |+ +.|+|+++|..+... 
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  161 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGV  161 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCc
Confidence            99999999998873   233566666633  35677777766666799999999999984 44 499999999887542 


Q ss_pred             -------CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143        183 -------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  221 (940)
Q Consensus       183 -------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~  221 (940)
                             ........+.|.|.++..+|+|.|+|.|.|..+....++
T Consensus       162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          162 KTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             EECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             ccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence                   111222345699999999999999999999887655443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.76  E-value=1.4e-18  Score=176.89  Aligned_cols=146  Identities=18%  Similarity=0.291  Sum_probs=113.7

Q ss_pred             EEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEee-eccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG-VRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       240 ~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~-v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      ....|+++.|.|.+.+ |. .|+|+|+|..+...       .+.+|.|.+ +..+|+|.|+|.|.|..|.......+.|.
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~   80 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVG   80 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            3467999999999987 44 49999999998764       223599999 99999999999999999986666655554


Q ss_pred             eccCCeEEE------------------cC--Cc---eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec
Q psy11143        319 GHRAPRLVV------------------KP--FD---MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG  375 (940)
Q Consensus       319 ~~~~P~i~~------------------~p--~~---~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~  375 (940)
                      ...+|....                  .+  ..   ..+.+|++++|.|.+   |.|.|+|+|+|..+.....    ..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~----~~~  153 (186)
T 1jbj_A           81 SADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA----TKN  153 (186)
T ss_dssp             SCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC----CSS
T ss_pred             cccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC----Ccc
Confidence            433332100                  00  00   123499999999998   8899999999998864332    456


Q ss_pred             eEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        376 SLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       376 sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      +|.|.++..+|+|.|+|.|.|..|..
T Consensus       154 ~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          154 TWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            89999999999999999999999976

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.76  E-value=5.5e-18  Score=171.14  Aligned_cols=156  Identities=12%  Similarity=0.163  Sum_probs=119.6

Q ss_pred             cEEEecCCeEEEEEEeec--cCCCeEEEEECCEeec----------CCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         54 STTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSLD----------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g--~P~p~V~W~kdg~~I~----------~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+.+.+|+.|+|.|...+  .|.+.|.|+|++..|.          ...+..+..+++ |.|.+++.+|+|.|+|.|.|.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gs-L~I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD-LKIKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSC-EEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCc-EEEcccccccCEEEEEEEEeC
Confidence            456789999999995433  5667999999997552          334555545555 799999999999999999999


Q ss_pred             CCce--EEEEEEEEecccC-CeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeec
Q psy11143        122 EGSA--ESVAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI  198 (940)
Q Consensus       122 ~g~~--~~~~~L~V~~~~~-P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v  198 (940)
                      .|..  ...+.|.|..... |.+.        ..+..++|.|.+.|.|.|.|+|++++..+....+        +.|.++
T Consensus        84 ~g~~~~~~~~~l~V~~~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~--------~~i~~~  147 (176)
T 1hng_A           84 NGTRILNKALDLRILEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ--------KTMSYQ  147 (176)
T ss_dssp             TCCEEEEEEEEEEEECCCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS--------SEEEEE
T ss_pred             CCCEEEEEEEEEEEeCCCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc--------EEEEEE
Confidence            9986  4456666654322 2222        2345699999999999999999999987754432        455678


Q ss_pred             ccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        199 GPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       199 ~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      ..+|+|.|+|.|.|..|..+....|.+.
T Consensus       148 ~~~d~G~Y~C~a~N~~g~~~~~~~l~~~  175 (176)
T 1hng_A          148 WTNLRAPFKCKAVNRVSQESEMEVVNCP  175 (176)
T ss_dssp             CSCCSSCEEEEEEETTEEEEEEECCCCC
T ss_pred             EccCCeEEEEEEEecCCCceecccccCC
Confidence            8999999999999999998888777653

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.76  E-value=9.3e-18  Score=166.86  Aligned_cols=163  Identities=17%  Similarity=0.259  Sum_probs=125.6

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccC-CCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +|.+...|....+.+|+.+.|.|.+.+.| .+.+.|+|+|..+....        ..+.|.+++.+|+|.|+|.+.+...
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~--------~~~~~~~~~~~d~G~Y~C~~~~~~~   75 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT--------QPSYRFKANNNDSGEYTCQTGQTSL   75 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC--------SSEEEEECCGGGCEEEEEEETTSBC
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc--------cceEEEecccccCeEEEEEEeCCCc
Confidence            46677788888899999999999999876 67999999999987542        2246788999999999999987544


Q ss_pred             ceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCC
Q psy11143        124 SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD  202 (940)
Q Consensus       124 ~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~D  202 (940)
                      ..  .+.|.|..  .+. ...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+...     .....|.|.+++.+|
T Consensus        76 s~--~~~l~v~~--~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-----~~~~~L~i~~v~~~d  145 (170)
T 3ry4_A           76 SD--PVHLTVLF--EWL-VLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS-----HLDPTFSIPQANHSH  145 (170)
T ss_dssp             CC--CEEEEEEC--CSE-EEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-----SSCCEEEESSCCGGG
T ss_pred             eE--eEEEEEEC--Cce-EecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc-----CCCCeEEEEeccccC
Confidence            33  44555554  333 3344456788999999999995 5677899999998876432     134579999999999


Q ss_pred             CceEEEEEEcCCcc-eeeeeeeee
Q psy11143        203 SGLYRCTASNLLGE-DVAEGYLTV  225 (940)
Q Consensus       203 sG~YtC~a~N~~g~-~s~s~~L~V  225 (940)
                      +|.|+|.|.|..|. .+..+.|.|
T Consensus       146 ~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          146 SGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CEEEEEEEEeCcCccccccEEEEE
Confidence            99999999999886 444455544

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=3.8e-18  Score=183.50  Aligned_cols=217  Identities=17%  Similarity=0.205  Sum_probs=127.7

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe---EEEeeceEEEEcccccCCCeEEEEEEE
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~---~~~~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      ..+|.+...|. ..|.+|++|+|.|.+.+ +.+.|.|+|+|..+......   ........|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            45678877776 67899999999999975 56799999998754311000   001233567999999999999999998


Q ss_pred             eCCC-----ceEEEEEEEEecc-cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEE----ee
Q psy11143        120 NSEG-----SAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HR  189 (940)
Q Consensus       120 n~~g-----~~~~~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~----~~  189 (940)
                      +...     .....+.|.|.+. ..|.+...+. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+........    ..
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~  160 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTF  160 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCC
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCce
Confidence            6532     1223566777764 3456665554 4688999999999998754 68999999987654322111    12


Q ss_pred             eceEEEeecccCCCceEEEEEEcCCc-----ceeeeeeeeecCCCCeeee-CCCeeEEecCCeEEEEEEEeeeCCCeEEE
Q psy11143        190 TGSLRLYNIGPQDSGLYRCTASNLLG-----EDVAEGYLTVTGAPPIFIQ-RPVSTTYSTGSTSRITCLVEGHPLPQMTW  263 (940)
Q Consensus       190 ~~sL~I~~v~~~DsG~YtC~a~N~~g-----~~s~s~~L~V~~~~p~~~~-~p~~~~v~~G~~v~L~C~v~G~P~p~ItW  263 (940)
                      +..|.|.+++  |+|.|+|.+.+...     ..+..+.|.|... |.+.. .+.......|..+.|.|.+ |.+.+.|.|
T Consensus       161 ~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~-p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~  236 (257)
T 1b6u_A          161 QADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN-PSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEED  236 (257)
T ss_dssp             BEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCC-C----------------------------------
T ss_pred             eEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEecc-CCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHH
Confidence            4579999998  99999999997532     2345567777743 33332 2223345678899999754 667778889


Q ss_pred             EECC
Q psy11143        264 FHDG  267 (940)
Q Consensus       264 ~k~g  267 (940)
                      ...+
T Consensus       237 ~~~~  240 (257)
T 1b6u_A          237 LNLD  240 (257)
T ss_dssp             ----
T ss_pred             hhhh
Confidence            7543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.76  E-value=4.3e-18  Score=171.96  Aligned_cols=159  Identities=17%  Similarity=0.246  Sum_probs=123.7

Q ss_pred             CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC--------------CCCeEEEe-----eceEEEEcccccCCCeE
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS--------------DDHVTYEH-----DGFVLVLNGVRESDAGV  113 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~--------------~~~~~~~~-----~gs~L~I~~v~~~DsG~  113 (940)
                      ..+.+.+|++++|.|.+.+.|.+.|.|+|++..+..              ..+.....     ....|.|.+++.+|+|.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            356789999999999999999999999999863211              11122211     13348999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceE
Q psy11143        114 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL  193 (940)
Q Consensus       114 YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL  193 (940)
                      |+|.+.+..+    .+.|.|..     +. .+....+.+|++++|.|.+.+.|.+.+.|++++..+       ....+.|
T Consensus        83 Y~C~~~~~~~----~~~l~V~~-----~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~-------~~~~~~L  145 (184)
T 2ny1_B           83 YICEVEDQKE----EVQLLVFG-----LT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTL  145 (184)
T ss_dssp             EEEEETTEEE----EEEEEEEE-----EE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE-------EEESSEE
T ss_pred             EEEEEEcCCC----cEEEEEEE-----ec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc-------ccCceEE
Confidence            9999987644    34455542     12 244567889999999999999999999999987654       2345689


Q ss_pred             EEeecccCCCceEEEEEEcCCcceeeeeeeeecCC
Q psy11143        194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA  228 (940)
Q Consensus       194 ~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~  228 (940)
                      .|.+++.+|+|.|+|.|.|..+..+..+.|.|...
T Consensus       146 ~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          146 SVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF  180 (184)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence            99999999999999999999998888888888743

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.76  E-value=4.4e-18  Score=175.76  Aligned_cols=170  Identities=18%  Similarity=0.305  Sum_probs=125.8

Q ss_pred             eeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC--eec------------CCCCceEEeecC--eEEEEeeeccCCCe
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL------------DSDDHVTYEHDG--FVLVLNGVRESDAG  296 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g--~~l------------~~~~~~~~~~~g--~sL~I~~v~~~DsG  296 (940)
                      ...|....+.+|+++.|.|.+.+.|.+.|.|+|++  ..+            ....++.....+  .+|.|.+++.+|+|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L            5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCE
Confidence            44567788999999999999999998999999853  211            112345544332  36999999999999


Q ss_pred             EEEEEEEeCCCCcee-EEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCeeeccCCcE---
Q psy11143        297 VYNCVAQNSEGSAES-VAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDRNH---  369 (940)
Q Consensus       297 ~YtC~A~N~~Gs~~~-s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~~i~~~~~~---  369 (940)
                      .|+|.|.|..+.... ...+.|... .+|.+...+.......|+.++|.|.+.| .|.+ .|+|+|+|..+......   
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  164 (213)
T 3d9a_L           85 MYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWT  164 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEEC
T ss_pred             EEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCC
Confidence            999999998775432 335666542 3677776554444557899999999987 6666 89999999887654111   


Q ss_pred             -------EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        370 -------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       370 -------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                             .....++|.|.++..+|+|.|+|.|.|......
T Consensus       165 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          165 DQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  204 (213)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             CccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence                   111244899999999999999999999877643

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.75  E-value=5e-18  Score=185.47  Aligned_cols=266  Identities=14%  Similarity=0.173  Sum_probs=106.2

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      +.+.|+++.|.+|++++|+|.+....+..+.|.-.  ...+...     ......+.|.+++.+  |.|+|.+.......
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~-----g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~   74 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLP-----GNNRKVYELSNVQED--SQPMCYSNCPDGQS   74 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCS-----CSSEEEEEEESCCSC--CCCEEEEECSSCEE
T ss_pred             eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccC-----CCceEEEEEEecccC--CeEEEEEEcCCccE
Confidence            34557788999999999999996433335888531  1111000     011124688888743  56999997543333


Q ss_pred             EEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCC-CCC--eEEEeeCCeeccccCceEEeeeceEEEeecccCC
Q psy11143        126 ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD  202 (940)
Q Consensus       126 ~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p--~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~D  202 (940)
                      +..+.|.|...+. .+.+.+....+.+|+.++|.|.+.+. |..  +|+|+|++..+............+|.+.....++
T Consensus        75 ~~~v~l~V~~~P~-~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~  153 (291)
T 1mq8_A           75 TAKTFLTVYWTPE-RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHH  153 (291)
T ss_dssp             EEECEEEECBCCS-CCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCS
T ss_pred             EEEEEEEEecCCC-CCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccC
Confidence            3455666655433 23333434558899999999999874 444  5899999987754321110122346665555566


Q ss_pred             CceEEEEEEcCCcc--------eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC---eEEEEECCeecC
Q psy11143        203 SGLYRCTASNLLGE--------DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLD  271 (940)
Q Consensus       203 sG~YtC~a~N~~g~--------~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p---~ItW~k~g~~l~  271 (940)
                      .+.|+|.|.|..+.        .+....|.|...|+..........+.+|+.++|.|.+.|.|++   .|.|+++|..+.
T Consensus       154 g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~  233 (291)
T 1mq8_A          154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN  233 (291)
T ss_dssp             SCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------------
T ss_pred             CceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecC
Confidence            66999999987552        3455677787554332211112367889999999999997554   699999999887


Q ss_pred             CCCceEEeecCeEEEEeee---cc--CCCeEEEEEEEeCCCCceeEEEEEEeeccCCeE
Q psy11143        272 SDDHVTYEHDGFVLVLNGV---RE--SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL  325 (940)
Q Consensus       272 ~~~~~~~~~~g~sL~I~~v---~~--~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i  325 (940)
                      ...  .  .+|..+.+...   ..  ++.+.|+|.|.|.....+....|.|....+|.+
T Consensus       234 ~~~--~--~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~~~~  288 (291)
T 1mq8_A          234 PTV--T--YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV  288 (291)
T ss_dssp             -----------------------------------------------------------
T ss_pred             cee--e--ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCCccE
Confidence            531  1  12333444433   23  335677899988666666667777765445543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.75  E-value=7.9e-18  Score=173.86  Aligned_cols=171  Identities=18%  Similarity=0.285  Sum_probs=125.5

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Eee----------c--CCCCeEEEee--ceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL----------D--SDDHVTYEHD--GFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~I----------~--~~~~~~~~~~--gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++++|.|.+.+.|.+.|.|+|++  ..+          .  ...++.....  ...|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            445577889999999999999999988899999853  211          1  1134444422  23689999999999


Q ss_pred             eEEEEEEEeCCCceEE-EEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCCeeccccCc---
Q psy11143        112 GVYNCVAQNSEGSAES-VAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDRN---  184 (940)
Q Consensus       112 G~YtC~a~n~~g~~~~-~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g~~i~~~~~---  184 (940)
                      |.|+|.+.|..+.... .+.|.|.... +|.+...+....+.+|+.++|.|.+.+ .|.+ .++|+++|..+.....   
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~  163 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW  163 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEE
T ss_pred             EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecC
Confidence            9999999998775433 3466765433 566666555444558999999999987 6665 8999999988765411   


Q ss_pred             -------eEEeeeceEEEeecccCCCceEEEEEEcCCccee
Q psy11143        185 -------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  218 (940)
Q Consensus       185 -------~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s  218 (940)
                             ......+.|.|.++..+|+|.|+|.|.|......
T Consensus       164 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          164 TDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  204 (213)
T ss_dssp             CCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             CCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence                   1112234799999999999999999999766543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.75  E-value=8e-18  Score=180.10  Aligned_cols=177  Identities=16%  Similarity=0.320  Sum_probs=127.5

Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEe---eeCCCeEEEEECCeecCCC------------------CceEEee----cCeEE
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVE---GHPLPQMTWFHDGNSLDSD------------------DHVTYEH----DGFVL  285 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~---G~P~p~ItW~k~g~~l~~~------------------~~~~~~~----~g~sL  285 (940)
                      .+...+....+.+|++++|.|.+.   +.|.+.|.|++++......                  .+..+..    ...+|
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   86 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL   86 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence            445566778899999999999987   6778899999976533221                  2333321    11459


Q ss_pred             EEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEee---cCcCCCeEEEEeCCee
Q psy11143        286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP---DGEPLPRISWSKDEAE  362 (940)
Q Consensus       286 ~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v---~g~P~p~i~W~k~g~~  362 (940)
                      .|.+++.+|+|.|+|.|.|..+.......+.+.+..     ..|....+.+|++++|.|.+   .+.|.|.|.|++++..
T Consensus        87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~  161 (268)
T 3mj6_A           87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS  161 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTT
T ss_pred             EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCC
Confidence            999999999999999999987666444444443311     13445678899999999999   6789999999994321


Q ss_pred             e-c-----------------cC----CcEEE-----eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        363 F-V-----------------ED----RNHKI-----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       363 i-~-----------------~~----~~~~i-----~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      . .                 ..    .+..+     ...++|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  238 (268)
T 3mj6_A          162 HTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD  238 (268)
T ss_dssp             CSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence            1 0                 00    12222     23568999999999999999999999999999999999654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.75  E-value=5.5e-18  Score=176.79  Aligned_cols=175  Identities=21%  Similarity=0.323  Sum_probs=131.3

Q ss_pred             eCCCeeEEecCCeEEEEEEEeeeCC-CeEEEEECCeecC-------------CCCceE----------EeecCeEEEEee
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFHDGNSLD-------------SDDHVT----------YEHDGFVLVLNG  289 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~P~-p~ItW~k~g~~l~-------------~~~~~~----------~~~~g~sL~I~~  289 (940)
                      ..|....+.+|+++.|.|.+.+.|. +.+.|++++....             ...++.          +..++. |.|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-L~i~~   83 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGR-LVLAE   83 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCC-EEESS
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCce-EEEcc
Confidence            3466788999999999999999985 8999998654321             012222          444455 99999


Q ss_pred             eccCCCeEEEEEEEeCC-CCceeEEEEEEeec-cCCeEEEcCCceeecCCCeE-EEEEee-cCcCCCeEEEEeCCeeecc
Q psy11143        290 VRESDAGVYNCVAQNSE-GSAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSV-EIPCKP-DGEPLPRISWSKDEAEFVE  365 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~-Gs~~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~v-tL~C~v-~g~P~p~i~W~k~g~~i~~  365 (940)
                      ++.+|+|.|+|.|.|.. +.....+.|.|... ..|.+...+....+.+|+.+ +|.|.+ .+.|.|.|.|++++..+..
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~  163 (231)
T 2pet_A           84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV  163 (231)
T ss_dssp             CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred             cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence            99999999999999987 77777777777642 23666666666778899988 999999 8999999999999998865


Q ss_pred             CC----cEEEee------------eceEEEecCCCCCCeEEEEEEEe-----CCee-EEEEEEEEE
Q psy11143        366 DR----NHKIHR------------TGSLRLYNIGPQDSGLYRCTASN-----LLGE-DVAEGYLTV  409 (940)
Q Consensus       366 ~~----~~~i~~------------~~sL~I~~v~~~D~G~YtC~A~N-----~~G~-~~~s~~L~V  409 (940)
                      ..    ++.+..            .+.|.|.....+|.|.|+|.|.|     ..|. .+..+.|.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            54    444332            15688876666679999999999     5555 444444443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.75  E-value=1.1e-17  Score=175.04  Aligned_cols=172  Identities=14%  Similarity=0.233  Sum_probs=117.4

Q ss_pred             CeeEEecCCeEEEEEEEeeeCCC---eEEEEECCeec-----------CC------CCceEEee-----cCeEEEEeeec
Q psy11143        237 VSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSL-----------DS------DDHVTYEH-----DGFVLVLNGVR  291 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G~P~p---~ItW~k~g~~l-----------~~------~~~~~~~~-----~g~sL~I~~v~  291 (940)
                      ..+.+.+|++++|.|.+.+.+.+   .|.|+|++...           ..      ..+.....     ...+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            34678899999999999876655   79999876421           10      11222221     12469999999


Q ss_pred             cCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecC-cCCCeEEEEeCCeeeccCC--c
Q psy11143        292 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDR--N  368 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~~~~--~  368 (940)
                      .+|+|.|+|.|.|..|..+....+.+..    .+...+....+.+|+.+.|.|.+.| .|.|.|+|+|++..+....  .
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~----~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~  167 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAA----LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP  167 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEB----CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeecc----ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceE
Confidence            9999999999999887766554444432    2222233456778999999999998 5999999999765443222  2


Q ss_pred             EEEeeece---EEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        369 HKIHRTGS---LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       369 ~~i~~~~s---L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      .....++.   +.+..++.+|+|.|+|.|+|..|....++.|.|.+|
T Consensus       168 ~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          168 VVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             CEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            22222332   345567889999999999999999999999888654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.75  E-value=1.9e-17  Score=171.80  Aligned_cols=177  Identities=16%  Similarity=0.268  Sum_probs=122.9

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeCC-----CeEEEEECCeec---------CC------CCceEEeec-----CeEEEEee
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHPL-----PQMTWFHDGNSL---------DS------DDHVTYEHD-----GFVLVLNG  289 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P~-----p~ItW~k~g~~l---------~~------~~~~~~~~~-----g~sL~I~~  289 (940)
                      .+....+..|+++.|.|.+.+.|.     +.+.|+|++..+         ..      ..+..+..+     ..+|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            345567889999999999988774     389999975332         10      123333322     23699999


Q ss_pred             eccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC-CeeeccCCc
Q psy11143        290 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRN  368 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~-g~~i~~~~~  368 (940)
                      ++.+|+|.|+|.|.| .+.....+.|.|..  +|..........+.+|+.++|.|.+.|.|.|.|.|+++ +..+.....
T Consensus        87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~--~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~  163 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGADYKRITVKVNA--PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT  163 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSEEEEEEEEEEEB--CCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEE
T ss_pred             cccccCeEEEEEEEe-CCCceeEEEEEEEC--CCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccc
Confidence            999999999999999 56666666676653  33222111123577899999999999999999999998 555443322


Q ss_pred             EEE--eeeceEE---EecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        369 HKI--HRTGSLR---LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       369 ~~i--~~~~sL~---I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      ...  ..++.+.   +..+..+|.|.|+|.|.|..|....++.|.|.++|.
T Consensus       164 ~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          164 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             EEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             eEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            211  1122222   224567899999999999999999999999887654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.75  E-value=6.1e-18  Score=176.41  Aligned_cols=176  Identities=20%  Similarity=0.319  Sum_probs=130.2

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC-CeEEEEECCEeec----------C---CCCeE----------EEeeceEEEEcc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFHDGNSLD----------S---DDHVT----------YEHDGFVLVLNG  105 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~-p~V~W~kdg~~I~----------~---~~~~~----------~~~~gs~L~I~~  105 (940)
                      ..|..+.+.+|+.+.|.|.+.+.|. +.|.|+|++....          .   ..+..          +..++. |.|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-L~i~~   83 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGR-LVLAE   83 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCC-EEESS
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCce-EEEcc
Confidence            4567888999999999999999885 8999998654311          0   11111          233344 79999


Q ss_pred             cccCCCeEEEEEEEeCC-CceEEEEEEEEecccC-CeeEecCCceeecCCCcE-EEEEEe-CCCCCCeEEEeeCCeeccc
Q psy11143        106 VRESDAGVYNCVAQNSE-GSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSSV-EIPCKP-DGEPLPRISWSKDEAEFVE  181 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~-g~~~~~~~L~V~~~~~-P~~~~~p~~~~v~~Ge~v-tL~C~v-~g~P~p~ItW~k~g~~i~~  181 (940)
                      ++.+|+|.|+|.+.+.. +.....+.|.|...+. |.+...+....+.+|+.+ .|.|.+ .+.|.+.++|++++..+..
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~  163 (231)
T 2pet_A           84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV  163 (231)
T ss_dssp             CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred             cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence            99999999999999987 6666678888876543 566666677778899998 999999 8899999999999988865


Q ss_pred             cC----ceEEee------------eceEEEeecccCCCceEEEEEEcC-----Ccc-eeeeeeeeec
Q psy11143        182 DR----NHKIHR------------TGSLRLYNIGPQDSGLYRCTASNL-----LGE-DVAEGYLTVT  226 (940)
Q Consensus       182 ~~----~~~~~~------------~~sL~I~~v~~~DsG~YtC~a~N~-----~g~-~s~s~~L~V~  226 (940)
                      ..    +..+..            .+.|.|.....+|.|.|+|.|.|.     .+. .+..+.|.|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~  230 (231)
T 2pet_A          164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH  230 (231)
T ss_dssp             CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCC
T ss_pred             ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEe
Confidence            54    333322            145888766666699999999994     444 4445555543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.75  E-value=1.8e-17  Score=170.48  Aligned_cols=166  Identities=17%  Similarity=0.231  Sum_probs=120.5

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe-EEE--eeceEEEEcccccCCCeEEEEEE
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-TYE--HDGFVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~-~~~--~~gs~L~I~~v~~~DsG~YtC~a  118 (940)
                      +..+|.+...|. ..+.+|++|+|.|.+.+ +.+.|.|+|+|..+...... ...  ..+..|.|.+++.+|+|.|+|.+
T Consensus         5 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            5 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             --CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence            345778877776 67899999999999974 77899999999765321100 111  23456899999999999999999


Q ss_pred             EeCCC-----ceEEEEEEEEecc-cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEe----
Q psy11143        119 QNSEG-----SAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----  188 (940)
Q Consensus       119 ~n~~g-----~~~~~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~----  188 (940)
                      .+...     .....+.|.|.+. +.|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.........    
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~  160 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGT  160 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTE
T ss_pred             ecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCc
Confidence            87531     1223566777654 3466666664 57899999999999986 56789999998876543211111    


Q ss_pred             eeceEEEeecccCCCceEEEEEEcC
Q psy11143        189 RTGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       189 ~~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      ..+.|.|.+++  |+|.|+|.|.+.
T Consensus       161 ~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          161 FQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEEEEEEEECC--SCEEEEEEEEET
T ss_pred             eEEEEEeCCcC--CCeeEEEEEEcC
Confidence            25679999998  999999999865

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.75  E-value=4.1e-18  Score=173.45  Aligned_cols=147  Identities=18%  Similarity=0.291  Sum_probs=113.1

Q ss_pred             EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcc-cccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG-VRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~-v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      ..+.+|++++|.|.+.+ |. .|+|+|+|..+...       .+..|.|.+ ++.+|+|.|+|.|.|..|.......+.|
T Consensus         9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v   79 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARV   79 (186)
T ss_dssp             EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCC
T ss_pred             EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            44578999999999987 44 49999999998753       233579999 9999999999999999888655555555


Q ss_pred             ecccCCeeEe----------------c--C--Cc---eeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeee
Q psy11143        134 NGHRAPRLVV----------------K--P--FD---MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT  190 (940)
Q Consensus       134 ~~~~~P~~~~----------------~--p--~~---~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~  190 (940)
                      .....+....                .  +  ..   ..+.+|+++.|.|.+   |.|.|+|+|+|..+.....    ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~----~~  152 (186)
T 1jbj_A           80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA----TK  152 (186)
T ss_dssp             CSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC----CS
T ss_pred             ecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC----Cc
Confidence            4433221100                0  0  01   234499999999998   7889999999998864332    45


Q ss_pred             ceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        191 GSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       191 ~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      +.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       153 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          153 NTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            689999999999999999999988765

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.74  E-value=5.2e-18  Score=176.24  Aligned_cols=175  Identities=17%  Similarity=0.331  Sum_probs=123.7

Q ss_pred             eeEEecCCeEEEEEEEeeeCC-----CeEEEEECCeec-------------CCCCceEEee-----cCeEEEEeeeccCC
Q psy11143        238 STTYSTGSTSRITCLVEGHPL-----PQMTWFHDGNSL-------------DSDDHVTYEH-----DGFVLVLNGVRESD  294 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~P~-----p~ItW~k~g~~l-------------~~~~~~~~~~-----~g~sL~I~~v~~~D  294 (940)
                      ...+.+|++++|.|.+.+.|.     +.+.|++++...             ....+..+..     ...+|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            356778999999999988764     689999987443             1123333322     13459999999999


Q ss_pred             CeEEEEEEEeCCCCceeEEEEEEeecc-CCeEEEcCCceeecCCCeEEEEEee-cCcCCCeEEEEeC-CeeeccCCcEEE
Q psy11143        295 AGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKD-EAEFVEDRNHKI  371 (940)
Q Consensus       295 sG~YtC~A~N~~Gs~~~s~~l~V~~~~-~P~i~~~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~-g~~i~~~~~~~i  371 (940)
                      +|.|+|.+.|. +..+..+.|.|.... +|.+...+ ...+.+|++++|.|.+ .+.|.|.+.|+++ +..+........
T Consensus        84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~  161 (222)
T 4i0k_A           84 EGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQ  161 (222)
T ss_dssp             CSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEE
T ss_pred             CEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeE
Confidence            99999999986 344455556665432 35555444 4467889999999999 8999999999994 444433222222


Q ss_pred             ee--ec---eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        372 HR--TG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       372 ~~--~~---sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      ..  .+   .|.|.++..+|.|.|+|.|.|..|....++.|.|.++|.
T Consensus       162 ~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          162 MANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL  209 (222)
T ss_dssp             EECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred             EcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence            11  22   378999999999999999999999999999999988764

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=2e-17  Score=176.28  Aligned_cols=180  Identities=17%  Similarity=0.181  Sum_probs=131.1

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC-CeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      ..+|.+...|.. .|.+|++|+|.|.+.+ +.+.+.|+|+|..+.... ..........|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            457888888877 8999999999999875 456899999998764210 0001123456799999999999999999886


Q ss_pred             CCce--EEEEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeec
Q psy11143        122 EGSA--ESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI  198 (940)
Q Consensus       122 ~g~~--~~~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v  198 (940)
                      .+..  ...+.|.|.+.. .|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+... .........|.|.++
T Consensus        83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~-~~~~~~~~~l~I~~v  159 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ-RGYGKVQAEFPLGPV  159 (242)
T ss_dssp             TEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE-EEECSSEEEEEEEEC
T ss_pred             CccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc-ccCCCceEEEEeCCC
Confidence            4432  235667776533 46666555 4568899999999998865 4599999998766531 111223467999999


Q ss_pred             ccCCCceEEEEEEcCC---cceeeeeeeeecC
Q psy11143        199 GPQDSGLYRCTASNLL---GEDVAEGYLTVTG  227 (940)
Q Consensus       199 ~~~DsG~YtC~a~N~~---g~~s~s~~L~V~~  227 (940)
                      +.+|+|.|+|.+.|..   ...+..+.|.|..
T Consensus       160 ~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          160 TTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             CGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             ccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            9999999999999864   2345566777775

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.73  E-value=3.5e-17  Score=168.87  Aligned_cols=166  Identities=17%  Similarity=0.310  Sum_probs=121.4

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Eee------------cCCCCeEEEee--ceEEEEcccccCCCeEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL------------DSDDHVTYEHD--GFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~I------------~~~~~~~~~~~--gs~L~I~~v~~~DsG~Yt  115 (940)
                      |..+.+.+|+.++|.|.+.+.|.+.|.|+|++  ..+            ....++.+...  ...|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            78889999999999999999888899999842  221            11234443322  246899999999999999


Q ss_pred             EEEEeCCCceEE-EEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCCeecccc-C-------
Q psy11143        116 CVAQNSEGSAES-VAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVED-R-------  183 (940)
Q Consensus       116 C~a~n~~g~~~~-~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g~~i~~~-~-------  183 (940)
                      |.+.|..+.... ...|.|.... +|.+...+....+.+|+.++|.|.+.| .|.+ .|+|+++|..+... .       
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  166 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD  166 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence            999988765433 3456665432 466666555444568999999999987 4554 89999999887544 1       


Q ss_pred             --ceEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        184 --NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       184 --~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                        .......+.|.|.++..+|+|.|+|.|.|.....
T Consensus       167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          167 SKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence              1111223479999999999999999999976543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.73  E-value=5.3e-17  Score=166.93  Aligned_cols=166  Identities=16%  Similarity=0.211  Sum_probs=120.5

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCce---EEeecCeEEEEeeeccCCCeEEEEEEEe
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCVAQN  304 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~---~~~~~g~sL~I~~v~~~DsG~YtC~A~N  304 (940)
                      .+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+......   .....+..|.|.+++.+|+|.|+|.+.|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            4555655554 67889999999999974 77899999998766422111   1112234599999999999999999987


Q ss_pred             CCC-----CceeEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe----ee
Q psy11143        305 SEG-----SAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RT  374 (940)
Q Consensus       305 ~~G-----s~~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~----~~  374 (940)
                      ...     ..+..+.|.|... .+|.+...|. ..+.+|++++|.|.+.+ |.+.|.|+|+|..+.........    ..
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~  162 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQ  162 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEE
T ss_pred             CCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceE
Confidence            532     2234556777643 4577777665 47899999999999986 56899999999866433211111    25


Q ss_pred             ceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        375 GSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       375 ~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      ++|.|.+++  |+|.|+|.|.+...
T Consensus       163 ~~L~i~~v~--d~G~Y~C~a~~~~~  185 (201)
T 1nkr_A          163 ADFPLGPAT--HGGTYRCFGSFHDS  185 (201)
T ss_dssp             EEEEEEECC--SCEEEEEEEEETTE
T ss_pred             EEEEeCCcC--CCeeEEEEEEcCCC
Confidence            689999998  99999999998643

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.73  E-value=6.6e-18  Score=184.54  Aligned_cols=255  Identities=16%  Similarity=0.203  Sum_probs=109.2

Q ss_pred             EecCCceeecCCCcEEEEEEeCCCCCC-eEEEee--CCeec-cccCceEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        142 VVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSK--DEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       142 ~~~p~~~~v~~Ge~vtL~C~v~g~P~p-~ItW~k--~g~~i-~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      .+.|....|.+|+++.|.|.+.. +.+ .+.|.-  .+..+ .....     ...+.+.+++.  .|.|+|.+.......
T Consensus         3 ~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~-----~~~~~l~~v~~--~~~y~C~~~~~~~~~   74 (291)
T 1mq8_A            3 SVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNN-----RKVYELSNVQE--DSQPMCYSNCPDGQS   74 (291)
T ss_dssp             EEECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSS-----EEEEEEESCCS--CCCCEEEEECSSCEE
T ss_pred             EEeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCc-----eEEEEEEeccc--CCeEEEEEEcCCccE
Confidence            34566788999999999999974 444 488864  22222 11111     12477888874  357999997654456


Q ss_pred             eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeee-CCC--eEEEEECCeecCCCCceEEeecCeEEEEeeeccCC
Q psy11143        218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD  294 (940)
Q Consensus       218 s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~p--~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~D  294 (940)
                      +..+.|.|...|..+.+.+....+.+|+.++|.|.+.|. |..  +|+|+|++..+....... .....+|.+.....++
T Consensus        75 ~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~-~~~~~~l~~~~~~~D~  153 (291)
T 1mq8_A           75 TAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHH  153 (291)
T ss_dssp             EEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCB-TTEEEEEECCCSSSCS
T ss_pred             EEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCC-CCceEEEEeeeeeccC
Confidence            677788888666555555555568899999999999885 444  599999998775322110 0011236666666677


Q ss_pred             CeEEEEEEEeCCCC--------ceeEEEEEEeeccCCeE--E-EcCCceeecCCCeEEEEEeecCcCCC---eEEEEeCC
Q psy11143        295 AGVYNCVAQNSEGS--------AESVAMIRINGHRAPRL--V-VKPFDMRAPAGSSVEIPCKPDGEPLP---RISWSKDE  360 (940)
Q Consensus       295 sG~YtC~A~N~~Gs--------~~~s~~l~V~~~~~P~i--~-~~p~~~~v~~G~~vtL~C~v~g~P~p---~i~W~k~g  360 (940)
                      .+.|+|+|.|..+.        .+....+.|.  ++|..  . ..|  ..+.+|+.++|.|.+.|.|++   .++|+++|
T Consensus       154 g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~--~~P~~~~~~~~p--~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g  229 (291)
T 1mq8_A          154 GANFSCRTELDLRPQGLELFENTSAPYQLQTF--VLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGD  229 (291)
T ss_dssp             SCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------------
T ss_pred             CceEEEEEEecCCccCCccccccccceEEEEE--ecCCCCceecCC--cCccCCCeEEEEEEcCCCCCCcccEEEEEECC
Confidence            77999999998653        1233344443  44321  1 112  257899999999999998664   69999999


Q ss_pred             eeeccCCcEEEeeeceEEEecC---CCCC--CeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        361 AEFVEDRNHKIHRTGSLRLYNI---GPQD--SGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       361 ~~i~~~~~~~i~~~~sL~I~~v---~~~D--~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      ..+....  . .....+++...   .+++  .+.|+|.|.|.....+....|+|...
T Consensus       230 ~~l~~~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~  283 (291)
T 1mq8_A          230 QRLNPTV--T-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF  283 (291)
T ss_dssp             ---------------------------------------------------------
T ss_pred             EecCcee--e-ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcC
Confidence            8875421  1 11223333333   3434  56678998885555666777887764

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.73  E-value=3.5e-17  Score=171.09  Aligned_cols=171  Identities=20%  Similarity=0.237  Sum_probs=117.8

Q ss_pred             CceeecCCCcEEEEEEeCCCCCC---eEEEeeCCeecc-----------c------cCceEEe------eeceEEEeecc
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPLP---RISWSKDEAEFV-----------E------DRNHKIH------RTGSLRLYNIG  199 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~p---~ItW~k~g~~i~-----------~------~~~~~~~------~~~sL~I~~v~  199 (940)
                      .++.+.+|++++|.|.+.+.+.+   .|.|+|++....           .      ..+....      .+.+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            45678899999999999876544   699998654211           0      0111111      13479999999


Q ss_pred             cCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEee-eCCCeEEEEECCeec-CCCCce-
Q psy11143        200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSL-DSDDHV-  276 (940)
Q Consensus       200 ~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G-~P~p~ItW~k~g~~l-~~~~~~-  276 (940)
                      .+|+|.|+|.|.|..+.....+.+.+..   .....+....+.+|+.+.|.|.+.| .|.|.|+|++++..+ ...... 
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~---~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~  168 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAA---LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV  168 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEB---CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeecc---ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence            9999999999999888776665555442   2223344567788999999999998 599999999975444 332222 


Q ss_pred             EEeecCe--EEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        277 TYEHDGF--VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       277 ~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      ....++.  .+.+..++.+|+|.|+|.|.|..|..++++.|.|..
T Consensus       169 ~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          169 VADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             EECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             EECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            2222332  244557888999999999999999998888877743

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.72  E-value=6.3e-17  Score=166.97  Aligned_cols=167  Identities=19%  Similarity=0.269  Sum_probs=120.5

Q ss_pred             CCceeecCCCcEEEEEEeCCCCCCeEEEeeC--Ceec------------cccCceEEeee---ceEEEeecccCCCceEE
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEF------------VEDRNHKIHRT---GSLRLYNIGPQDSGLYR  207 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~--g~~i------------~~~~~~~~~~~---~sL~I~~v~~~DsG~Yt  207 (940)
                      |....+.+|++++|.|.+.+.|.+.|.|+++  +..+            ....++.....   .+|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            7788899999999999999998889999984  2221            01234443322   37999999999999999


Q ss_pred             EEEEcCCccee-eeeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCC-Cc---eEE
Q psy11143        208 CTASNLLGEDV-AEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSD-DH---VTY  278 (940)
Q Consensus       208 C~a~N~~g~~s-~s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~-~~---~~~  278 (940)
                      |.+.|..+... ....|.|..  .+|.+...+....+..|+.++|.|.+.|. |.+ .|+|+|+|..+... ..   ...
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  166 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD  166 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence            99998776432 233566653  24555554443344589999999999984 554 89999999988655 11   111


Q ss_pred             eecC-----eEEEEeeeccCCCeEEEEEEEeCCCCcee
Q psy11143        279 EHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAES  311 (940)
Q Consensus       279 ~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~  311 (940)
                      ..++     ..|.|..+..+|+|.|+|.|.|.......
T Consensus       167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (210)
T 1lk3_L          167 SKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPV  204 (210)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCE
T ss_pred             CCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCee
Confidence            1122     25999999999999999999998765543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.72  E-value=5.4e-17  Score=168.00  Aligned_cols=173  Identities=14%  Similarity=0.282  Sum_probs=122.5

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeee-CCCeEEEEECC--eec--------------C--CCCceEEee--cCeEEEEeee
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG--NSL--------------D--SDDHVTYEH--DGFVLVLNGV  290 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~-P~p~ItW~k~g--~~l--------------~--~~~~~~~~~--~g~sL~I~~v  290 (940)
                      +...+ ...+.+|++++|.|.+.+. |.+.+.|+|..  ...              .  ...++.+..  ...+|.|.++
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNI   82 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccC
Confidence            34445 7789999999999999998 89999999832  110              0  112444322  2245999999


Q ss_pred             ccCCCeEEEEEEEeCCC-----CceeEEEEEEeec--cCCeEEEcCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCe
Q psy11143        291 RESDAGVYNCVAQNSEG-----SAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEA  361 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~G-----s~~~s~~l~V~~~--~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~  361 (940)
                      +.+|+|.|+|.|.|..|     .......|.|...  .+|.+...+.......|+.++|.|.+.| .|.| .|.|+|+|.
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~  162 (218)
T 3s96_B           83 QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGT  162 (218)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCE
Confidence            99999999999999887     2233445666532  5677776555555566799999999998 5777 999999999


Q ss_pred             eeccCCcE--------EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        362 EFVEDRNH--------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       362 ~i~~~~~~--------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                      .+..+...        .....+.|.|.....+|.|.|+|.|.|..|....++
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          163 PITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             ECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            87642110        011124588888888899999999999998766543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=4.1e-17  Score=174.58  Aligned_cols=177  Identities=18%  Similarity=0.262  Sum_probs=125.3

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEEC--CeecC----------------CCCceEEeec----CeEEEEeeec
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLD----------------SDDHVTYEHD----GFVLVLNGVR  291 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~--g~~l~----------------~~~~~~~~~~----g~sL~I~~v~  291 (940)
                      +....+.+|++++|.|.+.|.|  .+.|.|+|+  +..+.                ...++.+..+    ..+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            3445788999999999999985  689999986  22110                1245555432    2369999999


Q ss_pred             cCCCeEEEEEEEeCCCC------c---eeEEEEEEeecc-------------CCeEEEcCCceeecCCCeEEEEEeecCc
Q psy11143        292 ESDAGVYNCVAQNSEGS------A---ESVAMIRINGHR-------------APRLVVKPFDMRAPAGSSVEIPCKPDGE  349 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs------~---~~s~~l~V~~~~-------------~P~i~~~p~~~~v~~G~~vtL~C~v~g~  349 (940)
                      .+|+|.|+|.|.|..|.      .   .....|.|....             ++.+...|..+.+.+|++++|.|.+.+.
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  166 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN  166 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence            99999999999998641      1   123456665421             2334455666788999999999999999


Q ss_pred             CCCeEEEEe--CCeeec------------cCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        350 PLPRISWSK--DEAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       350 P~p~i~W~k--~g~~i~------------~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      |.+.+.|+|  ++..+.            ...++.+..   ..+|.|.++..+|+|.|+|.|.|....-...+.|.|++.
T Consensus       167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~  246 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAA  246 (257)
T ss_dssp             CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSS
T ss_pred             CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCC
Confidence            999999999  554321            124555432   337999999999999999999997522222446666554

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.72  E-value=1.7e-16  Score=162.54  Aligned_cols=160  Identities=13%  Similarity=0.206  Sum_probs=116.0

Q ss_pred             CCCeeEEecCCeEEEEEEEee-eCCCeEEEEECCeecC---CC---------------CceEEeecCeEEEEeeeccCCC
Q psy11143        235 RPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLD---SD---------------DHVTYEHDGFVLVLNGVRESDA  295 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G-~P~p~ItW~k~g~~l~---~~---------------~~~~~~~~g~sL~I~~v~~~Ds  295 (940)
                      .|....+.+|++++|.|.+.+ .+.+.|.|++++..+.   ..               .+..+..+ .+|+|.+++.+|+
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~v~~~D~   82 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS-YSLQLSNLKMEDT   82 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTT-CCEEECSCCGGGC
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCC-eEEEECCCCcccC
Confidence            456678889999999999875 4557999999976542   10               13344433 4499999999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEEeecc-CCeEEEcCCceeecCCC-eEEEEEeecCc-CCCeEEEEeCCeeeccCCcEEEe
Q psy11143        296 GVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGS-SVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIH  372 (940)
Q Consensus       296 G~YtC~A~N~~Gs~~~s~~l~V~~~~-~P~i~~~p~~~~v~~G~-~vtL~C~v~g~-P~p~i~W~k~g~~i~~~~~~~i~  372 (940)
                      |.|+|.+.|..+.....+.|.|.... .|.+...+  .....|. +++|.|.+.|. |.|.|+|+++|..+..       
T Consensus        83 G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------  153 (193)
T 2if7_A           83 GSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------  153 (193)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-------
T ss_pred             ceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-------
Confidence            99999999998877666677775422 24444433  1234465 89999999985 5789999999976543       


Q ss_pred             eeceEEEecCCCC-CCeEEEEEEEeCCeeEEEEE
Q psy11143        373 RTGSLRLYNIGPQ-DSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       373 ~~~sL~I~~v~~~-D~G~YtC~A~N~~G~~~~s~  405 (940)
                       .+.|.|.....+ |.|.|+|.|.|..|..+..+
T Consensus       154 -~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          154 -QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             -SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             -CCeEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence             235666544454 89999999999999886543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.71  E-value=2.3e-16  Score=163.60  Aligned_cols=173  Identities=19%  Similarity=0.331  Sum_probs=121.5

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCC-----CeEEEeeCCeeccc---------------cCceEEee------eceEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPL-----PRISWSKDEAEFVE---------------DRNHKIHR------TGSLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~-----p~ItW~k~g~~i~~---------------~~~~~~~~------~~sL~I~~  197 (940)
                      .+..+.+.+|+++.|.|.+.+.|.     +.+.|++++..+..               ..+..+..      +.+|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            345567889999999999987663     48999997532210               12333322      24799999


Q ss_pred             cccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC-CeecCCCCce
Q psy11143        198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD-GNSLDSDDHV  276 (940)
Q Consensus       198 v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~-g~~l~~~~~~  276 (940)
                      ++.+|+|.|+|.+.| .+.....+.|.|.. ++..........+..|+.++|.|.+.|+|.|.|+|+++ +..+......
T Consensus        87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~-~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~  164 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGADYKRITVKVNA-PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTT  164 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSEEEEEEEEEEEB-CCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEE
T ss_pred             cccccCeEEEEEEEe-CCCceeEEEEEEEC-CCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccce
Confidence            999999999999999 56666677788873 32221111123567899999999999999999999998 6655543322


Q ss_pred             EEe--ecCe--EEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        277 TYE--HDGF--VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       277 ~~~--~~g~--sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      ...  .++.  ...+..+...|.|.|+|.|.|..|....++.|.|.
T Consensus       165 ~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          165 TNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             EECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             EEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            221  1221  12233556789999999999999999888888775

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.71  E-value=1.2e-17  Score=172.84  Aligned_cols=156  Identities=20%  Similarity=0.341  Sum_probs=110.5

Q ss_pred             EecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee-
Q psy11143        241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING-  319 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~-  319 (940)
                      +.+|++++|.|.+   |.+.|+|+|+|..+...     ...+.+|.|.++..+|+|.|+|.+.+... .  ...|.+.. 
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s-~--~~~v~v~~~   83 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQNKS-K--PLQVYYRMG   83 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSSCC-C--CEEEEEEC-
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCCCC-e--eEEEEEEEe
Confidence            3579999999998   78899999999887532     11233599999999999999999755322 2  23333330 


Q ss_pred             ---------------------------c-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC--CcE
Q psy11143        320 ---------------------------H-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--RNH  369 (940)
Q Consensus       320 ---------------------------~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~--~~~  369 (940)
                                                 . .+|.+...|. ....+|++++|.|.  |.|.|.|.|+|++..+...  .+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~  160 (204)
T 1sy6_A           84 SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKN  160 (204)
T ss_dssp             -----------------------------------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTT
T ss_pred             ccccccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCce
Confidence                                       0 0222222222 22238999999999  7899999999999987643  223


Q ss_pred             EEeeeceEEEecC-CCCCCeEEEEEEEeCCeeE-EEEEEEEEe
Q psy11143        370 KIHRTGSLRLYNI-GPQDSGLYRCTASNLLGED-VAEGYLTVT  410 (940)
Q Consensus       370 ~i~~~~sL~I~~v-~~~D~G~YtC~A~N~~G~~-~~s~~L~V~  410 (940)
                      ....+++|.|.++ +.+|+|.|+|.|.|..|.. +...+|.|+
T Consensus       161 ~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          161 IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             EEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             EecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            3335789999999 9999999999999999963 445555543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.71  E-value=1.6e-16  Score=168.27  Aligned_cols=174  Identities=16%  Similarity=0.308  Sum_probs=126.2

Q ss_pred             CeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eec-----------------CCCCceEEeec----CeEEEEeeec
Q psy11143        237 VSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL-----------------DSDDHVTYEHD----GFVLVLNGVR  291 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l-----------------~~~~~~~~~~~----g~sL~I~~v~  291 (940)
                      ....+.+|++++|.|.+.+.|  .+.|.|+|+.  ..+                 ....++.+..+    ..+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            457888999999999999987  6789999842  111                 12245555432    2359999999


Q ss_pred             cCCCeEEEEEEEeCCCCc--eeEEEEEEeec-------------cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEE
Q psy11143        292 ESDAGVYNCVAQNSEGSA--ESVAMIRINGH-------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW  356 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs~--~~s~~l~V~~~-------------~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W  356 (940)
                      .+|+|.|+|.|.|..+..  .....|.|...             .+|.+...+..+.+.+|++++|.|.+.+.|.|.+.|
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W  169 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAW  169 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEE
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEE
Confidence            999999999999983221  22345666542             245566667778899999999999999999999999


Q ss_pred             Ee--CCeeec------------cCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEE-EEEEEEEe
Q psy11143        357 SK--DEAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVT  410 (940)
Q Consensus       357 ~k--~g~~i~------------~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~-~s~~L~V~  410 (940)
                      +|  ++..+.            ...++.+..   ..+|.|.+++.+|+|.|+|.|.|..+... ..+.|.|.
T Consensus       170 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          170 YQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            99  554321            124554432   34699999999999999999999654332 24467776

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.71  E-value=1.7e-17  Score=172.40  Aligned_cols=175  Identities=18%  Similarity=0.348  Sum_probs=121.8

Q ss_pred             CcEEEecCCeEEEEEEeeccCC-----CeEEEEECCEee-------------cCCCCeEEEe-----eceEEEEcccccC
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPL-----PQMTWFHDGNSL-------------DSDDHVTYEH-----DGFVLVLNGVRES  109 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~-----p~V~W~kdg~~I-------------~~~~~~~~~~-----~gs~L~I~~v~~~  109 (940)
                      +.+.+.+|+.++|.|.+.+.|.     +.|.|++++...             ....+..+..     ....|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            4566889999999999988754     689999987432             1122222221     1345799999999


Q ss_pred             CCeEEEEEEEeCCCceEEEEEEEEecccC-CeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEee-CCeeccccCceE
Q psy11143        110 DAGVYNCVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSK-DEAEFVEDRNHK  186 (940)
Q Consensus       110 DsG~YtC~a~n~~g~~~~~~~L~V~~~~~-P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k-~g~~i~~~~~~~  186 (940)
                      |+|.|+|.+.+. +.....+.|.|...+. |.+...+ ...+.+|+.++|.|.+ .+.|.+.+.|++ ++..+.......
T Consensus        83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~  160 (222)
T 4i0k_A           83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS  160 (222)
T ss_dssp             GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEE
T ss_pred             cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCccee
Confidence            999999999986 3334455566655433 4444433 4567899999999999 789999999999 454443322222


Q ss_pred             Ee--eec---eEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCC
Q psy11143        187 IH--RTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP  229 (940)
Q Consensus       187 ~~--~~~---sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~  229 (940)
                      ..  ..+   .|.|.+++.+|+|.|+|.|.|..|.....+.|.|...|
T Consensus       161 ~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          161 QMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             EEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             EEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence            21  112   37899999999999999999999999999999988433

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.71  E-value=1.3e-16  Score=164.77  Aligned_cols=169  Identities=14%  Similarity=0.206  Sum_probs=122.9

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC---CCeEEEEECC--eec------------CCCCceEEeecC--eEEEEeeeccCCCe
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP---LPQMTWFHDG--NSL------------DSDDHVTYEHDG--FVLVLNGVRESDAG  296 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P---~p~ItW~k~g--~~l------------~~~~~~~~~~~g--~sL~I~~v~~~DsG  296 (940)
                      |....+.+|++++|.|.+.+.|   .+.|.|+|++  ..+            ....++.....+  .+|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            6778899999999999999887   4789999863  222            112344443322  36999999999999


Q ss_pred             EEEEEEEeCCCCce-eEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCcCC-C-eEEEEeCCeeeccCCcE--
Q psy11143        297 VYNCVAQNSEGSAE-SVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-P-RISWSKDEAEFVEDRNH--  369 (940)
Q Consensus       297 ~YtC~A~N~~Gs~~-~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~-p-~i~W~k~g~~i~~~~~~--  369 (940)
                      .|+|.|.|..+... ....+.|..  ..+|.+...+....+..|+.++|.|.+.|.++ + .|.|+|+|..+..+...  
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~  166 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQ  166 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCC
Confidence            99999999876422 234555632  25777776555444567999999999998644 3 89999999887644211  


Q ss_pred             -E------EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143        370 -K------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       370 -~------i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s  404 (940)
                       .      ....+.|.|..+..+|.|.|+|.|.|.......+
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          167 PSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             ceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence             1      1123468999999999999999999988765443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.71  E-value=8.5e-17  Score=166.51  Aligned_cols=174  Identities=14%  Similarity=0.290  Sum_probs=122.5

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECC---Ee------------e-c--CCCCeEEE--eeceEEEEc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG---NS------------L-D--SDDHVTYE--HDGFVLVLN  104 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg---~~------------I-~--~~~~~~~~--~~gs~L~I~  104 (940)
                      +.+...| .+.+.+|++++|.|.+.+. |.+.|.|+|..   ..            . .  ...++.+.  .....|.|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            3455555 8889999999999999998 88999999832   10            0 0  01233332  123458999


Q ss_pred             ccccCCCeEEEEEEEeCCCc-----eEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeC
Q psy11143        105 GVRESDAGVYNCVAQNSEGS-----AESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKD  175 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~g~-----~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~  175 (940)
                      +++.+|+|.|+|.+.+..|.     ....+.|.|...  .+|.+...+....+..|+.++|.|.+.+ .|.+ .|+|+++
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~  160 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN  160 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence            99999999999999998762     122456676643  3466666555556667899999999998 5766 8999999


Q ss_pred             CeeccccCc--------eEEeeeceEEEeecccCCCceEEEEEEcCCcceeee
Q psy11143        176 EAEFVEDRN--------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  220 (940)
Q Consensus       176 g~~i~~~~~--------~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s  220 (940)
                      |..+.....        ..+.....|.|.....+|+|.|+|.|.|..+.....
T Consensus       161 g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          161 GTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             TEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             CEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            988864211        111223458888888889999999999988765544

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.71  E-value=6e-17  Score=167.12  Aligned_cols=166  Identities=16%  Similarity=0.236  Sum_probs=123.3

Q ss_pred             eeEEecCCeEEEEEEEeeeCCCeEEEEEC--CeecC------------CCCceEEee--cCeEEEEeeeccCCCeEEEEE
Q psy11143        238 STTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD------------SDDHVTYEH--DGFVLVLNGVRESDAGVYNCV  301 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~P~p~ItW~k~--g~~l~------------~~~~~~~~~--~g~sL~I~~v~~~DsG~YtC~  301 (940)
                      ...+.+|++++|.|.+.  |.+.+.|+|+  +..+.            ...++....  ...+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            77889999999999998  8889999994  32221            223444332  234599999999999999999


Q ss_pred             EEeCCC--CceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCcC--CCeEEEEeCCeeeccCCc-------
Q psy11143        302 AQNSEG--SAESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKDEAEFVEDRN-------  368 (940)
Q Consensus       302 A~N~~G--s~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~g~~i~~~~~-------  368 (940)
                      |.|..+  .......|.|..  ..+|.+...+....+..|+.++|.|.+.|.+  .+.+.|+|+|..+.....       
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  166 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ  166 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceEC
Confidence            999887  334445666652  2578887777655556899999999999863  479999999988754210       


Q ss_pred             --EEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        369 --HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       369 --~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                        ......+.|.|..+..+|.|.|+|.|.|..|....++
T Consensus       167 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          167 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             TTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence              0111234689999998999999999999998766654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.71  E-value=1.8e-16  Score=166.66  Aligned_cols=166  Identities=21%  Similarity=0.363  Sum_probs=119.7

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC--Ceec---------------CCCCceEEee---cCeEEEEeeec
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL---------------DSDDHVTYEH---DGFVLVLNGVR  291 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~--g~~l---------------~~~~~~~~~~---~g~sL~I~~v~  291 (940)
                      +...|....+.+|++++|.|. .+.|.+.|.|+|+  +..+               ....++.+..   ...+|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            344567788999999999999 7888999999995  2111               1123454442   23469999999


Q ss_pred             cCCCeEEEEEEEeCCCCce-----eEEEEEEeeccC----------CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEE
Q psy11143        292 ESDAGVYNCVAQNSEGSAE-----SVAMIRINGHRA----------PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW  356 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs~~-----~s~~l~V~~~~~----------P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W  356 (940)
                      .+|+|.|+|.|.|..|...     ....+.|....+          +.+...|....+.+|++++|.|.+.+.|.|.+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            9999999999999865311     233556643221          1566667778899999999999999999999999


Q ss_pred             EeCCe-----ee---------ccCCcEEEee-----eceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        357 SKDEA-----EF---------VEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       357 ~k~g~-----~i---------~~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      +|++.     .+         ....++.+..     ..+|.|.+++.+|+|.|+|.|.|..
T Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99631     11         1234555542     3589999999999999999999983

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.71  E-value=7.3e-17  Score=165.15  Aligned_cols=166  Identities=14%  Similarity=0.248  Sum_probs=117.2

Q ss_pred             eeEEecCCeEEEEEEEe----eeCCCeEEEEECCeecCC------------CCceEEe-ecCeEEEEeeeccCCCeEEEE
Q psy11143        238 STTYSTGSTSRITCLVE----GHPLPQMTWFHDGNSLDS------------DDHVTYE-HDGFVLVLNGVRESDAGVYNC  300 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~----G~P~p~ItW~k~g~~l~~------------~~~~~~~-~~g~sL~I~~v~~~DsG~YtC  300 (940)
                      ...+..|+++.|.|.+.    +.|.+.+.|++++..+..            ..+..+. ....+|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            46788999999999985    457789999999987620            1122221 223469999999999999999


Q ss_pred             EEEeCCCCce-----eEEEEEEeecc-CCeEEEcCCceeecCCCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEE-Ee
Q psy11143        301 VAQNSEGSAE-----SVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHK-IH  372 (940)
Q Consensus       301 ~A~N~~Gs~~-----~s~~l~V~~~~-~P~i~~~p~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~-i~  372 (940)
                      .|.|..|...     ..+.|.|.... .|.+...    ....|+.++|.|.+. |.|.|.|+|+++|..+....... ..
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  158 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD  158 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence            9999877653     34455554321 2443332    224588999999995 99999999999998886443222 22


Q ss_pred             ee-ceE---EEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143        373 RT-GSL---RLYNIGPQDSGLYRCTASNLLGEDVAEGYL  407 (940)
Q Consensus       373 ~~-~sL---~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L  407 (940)
                      .. +.+   .+..+..+|.|.|+|.|.|..|..++.+.+
T Consensus       159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            22 222   234556789999999999999988776544

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.71  E-value=5.7e-17  Score=174.31  Aligned_cols=217  Identities=13%  Similarity=0.144  Sum_probs=124.0

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCc----eEEeeeceEEEeecccCCCceEEEEEEc
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN----HKIHRTGSLRLYNIGPQDSGLYRCTASN  212 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~----~~~~~~~sL~I~~v~~~DsG~YtC~a~N  212 (940)
                      +.|.+...|. ..+.+|++|+|.|.+.+ +.+.+.|+|++..+.....    ......+.|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            3466666664 67889999999999975 5678999998875532110    0012356799999999999999999986


Q ss_pred             CCc-----ceeeeeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEe---ecC
Q psy11143        213 LLG-----EDVAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE---HDG  282 (940)
Q Consensus       213 ~~g-----~~s~s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~---~~g  282 (940)
                      ...     ..+..+.|.|..  .+|.+...+. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+.........   ..+
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~  161 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQ  161 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCB
T ss_pred             cCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCcee
Confidence            432     234556677764  3455555444 4688999999999998764 699999999877543221111   123


Q ss_pred             eEEEEeeeccCCCeEEEEEEEeCCCC---ceeEEEEEEeeccCCeEEEcC-CceeecCCCeEEEEEeecCcCCCeEEEEe
Q psy11143        283 FVLVLNGVRESDAGVYNCVAQNSEGS---AESVAMIRINGHRAPRLVVKP-FDMRAPAGSSVEIPCKPDGEPLPRISWSK  358 (940)
Q Consensus       283 ~sL~I~~v~~~DsG~YtC~A~N~~Gs---~~~s~~l~V~~~~~P~i~~~p-~~~~v~~G~~vtL~C~v~g~P~p~i~W~k  358 (940)
                      ..|.|.+++  |+|.|+|.|.|....   ...+..+.+.+..+|.+...+ .......|..+.|.|.+ |.+.+.|.|..
T Consensus       162 ~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~  238 (257)
T 1b6u_A          162 ADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLN  238 (257)
T ss_dssp             EEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC------------------------------------
T ss_pred             EEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhh
Confidence            469999998  999999999976431   122223444444566655222 12245678899999876 57888999976


Q ss_pred             CC
Q psy11143        359 DE  360 (940)
Q Consensus       359 ~g  360 (940)
                      .+
T Consensus       239 ~~  240 (257)
T 1b6u_A          239 LD  240 (257)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.70  E-value=1.2e-16  Score=164.90  Aligned_cols=170  Identities=15%  Similarity=0.236  Sum_probs=121.4

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccC---CCeEEEEECC--Eee------------cCCCCeEEEe--eceEEEEccccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHP---LPQMTWFHDG--NSL------------DSDDHVTYEH--DGFVLVLNGVRE  108 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P---~p~V~W~kdg--~~I------------~~~~~~~~~~--~gs~L~I~~v~~  108 (940)
                      +.. |..+.+.+|+.++|.|.+.+.|   .+.|.|+|++  ..+            ....++....  ....|.|.+++.
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   82 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT   82 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence            344 7888999999999999999877   4789999863  222            1123444332  224689999999


Q ss_pred             CCCeEEEEEEEeCCCceEE-EEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCCeeccccC
Q psy11143        109 SDAGVYNCVAQNSEGSAES-VAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDR  183 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g~~~~-~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g~~i~~~~  183 (940)
                      +|+|.|+|.+.|..+.... ...|.|...  .+|.+...+....+..|+.++|.|.+.+. |.+ .|+|+++|..+....
T Consensus        83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  162 (212)
T 1q0x_L           83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGM  162 (212)
T ss_dssp             GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCe
Confidence            9999999999997764322 345666432  35666665555556689999999999984 443 899999998875431


Q ss_pred             ce---------EEeeeceEEEeecccCCCceEEEEEEcCCccee
Q psy11143        184 NH---------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  218 (940)
Q Consensus       184 ~~---------~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s  218 (940)
                      ..         .......|.|.++..+|+|.|+|.|.|......
T Consensus       163 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          163 ETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN  206 (212)
T ss_dssp             EECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             ecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence            10         112234689999999999999999999765533

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.70  E-value=3e-16  Score=161.87  Aligned_cols=170  Identities=16%  Similarity=0.257  Sum_probs=118.1

Q ss_pred             EeCCCcEEEecCCeEEEEEEeecc-------CCCeEEEEECCEe------ec-----------CCCCeEEEee----ceE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGH-------PLPQMTWFHDGNS------LD-----------SDDHVTYEHD----GFV  100 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~-------P~p~V~W~kdg~~------I~-----------~~~~~~~~~~----gs~  100 (940)
                      ...|..+.+.+|++|+|.|.+.+.       +.+.|.|+|++..      +.           ...++.+..+    ...
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   83 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS   83 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence            345678889999999999999754       5679999998752      10           1123343321    235


Q ss_pred             EEEcccccCCCeEEEEEEEeCCCceE----EEEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCC----CCCeEE
Q psy11143        101 LVLNGVRESDAGVYNCVAQNSEGSAE----SVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGE----PLPRIS  171 (940)
Q Consensus       101 L~I~~v~~~DsG~YtC~a~n~~g~~~----~~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~----P~p~It  171 (940)
                      |.|.+++.+|+|.|+|.+.+..+...    ..+.|.|...+ .|.+.. +.  .+.+|+.++|.|.+.+.    |.|.++
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence            89999999999999999998764322    24667776543 344433 22  36799999999999874    888999


Q ss_pred             EeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeee
Q psy11143        172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  224 (940)
Q Consensus       172 W~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~  224 (940)
                      |++++.......   ....+.|.|..+..+|.|.|+|.|.|..+....+..+.
T Consensus       161 W~~~~~~~~~~~---~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          161 WTGNALSPLDPE---TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             EESSTTSSSCSS---CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             EeCCCCccCCCC---ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            999886543221   13456799999999999999999999765544333333

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.70  E-value=1.3e-16  Score=164.55  Aligned_cols=172  Identities=15%  Similarity=0.234  Sum_probs=124.1

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC---Ee--e---------cCCCCeEEEe--eceEEEEcccccC
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG---NS--L---------DSDDHVTYEH--DGFVLVLNGVRES  109 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg---~~--I---------~~~~~~~~~~--~gs~L~I~~v~~~  109 (940)
                      +.+...|..+.+.+|+.++|.|.+.+.|.+.|.|+|.+   ..  +         ....++.+..  ....|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            45566678899999999999999999988999999832   11  0         0122333332  2346899999999


Q ss_pred             CCeEEEEEEEeCCCceEE-EEEEEEec-ccCCeeEecCCceeecCCCcEEEEEEeCCCCC--CeEEEeeCCeeccccC--
Q psy11143        110 DAGVYNCVAQNSEGSAES-VAMIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDR--  183 (940)
Q Consensus       110 DsG~YtC~a~n~~g~~~~-~~~L~V~~-~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k~g~~i~~~~--  183 (940)
                      |+|.|+|.+.+..+.... ...|.|.. ..+|.+...+....+..|+.++|.|.+.+.++  +.++|+++|..+....  
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  161 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ  161 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred             cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence            999999999987653332 44566633 34567777676666778999999999998554  3899999998875421  


Q ss_pred             --------ceEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        184 --------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       184 --------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                              ...+.....|.|.....+|+|.|+|.|.|.....
T Consensus       162 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          162 SVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             ccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence                    1112223468888888899999999999976443

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.70  E-value=1.5e-16  Score=166.77  Aligned_cols=176  Identities=16%  Similarity=0.283  Sum_probs=126.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Ee---e---------cCCCCeEEEe--eceEEEEccccc
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NS---L---------DSDDHVTYEH--DGFVLVLNGVRE  108 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~---I---------~~~~~~~~~~--~gs~L~I~~v~~  108 (940)
                      .+.+...|..+.+.+|++++|.|.+.+.|.+.|.|+|++  ..   +         ....++....  ....|.|.+++.
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            445666688899999999999999999888899999842  10   0         1123333332  234589999999


Q ss_pred             CCCeEEEEEEEeCCCceEE-EEEEEEec-ccCCeeEecCCceeecCCCcEEEEEEeCC-CC-CCeEEEeeCCeeccccC-
Q psy11143        109 SDAGVYNCVAQNSEGSAES-VAMIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EP-LPRISWSKDEAEFVEDR-  183 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g~~~~-~~~L~V~~-~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P-~p~ItW~k~g~~i~~~~-  183 (940)
                      +|+|.|+|.+.+..+.... ...+.|.. ...|.+...+....+.+|+.++|.|.+.+ .| .+.++|++++..+.... 
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~  183 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ  183 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence            9999999999887653322 34566654 34566666665555667999999999987 45 58999999998876421 


Q ss_pred             ---------ceEEeeeceEEEeecccCCCceEEEEEEcCCcceeee
Q psy11143        184 ---------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  220 (940)
Q Consensus       184 ---------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s  220 (940)
                               ...+.....|.|..+..+|+|.|+|.|.|........
T Consensus       184 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  229 (237)
T 3sob_L          184 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  229 (237)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence                     1122234468899999999999999999987654433

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.70  E-value=2e-16  Score=163.18  Aligned_cols=170  Identities=16%  Similarity=0.253  Sum_probs=119.4

Q ss_pred             eCCCeeEEecCCeEEEEEEEeee-------CCCeEEEEECCeec-----------------CCCCceEEeec----CeEE
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGH-------PLPQMTWFHDGNSL-----------------DSDDHVTYEHD----GFVL  285 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~-------P~p~ItW~k~g~~l-----------------~~~~~~~~~~~----g~sL  285 (940)
                      ..|....+.+|++++|.|.+.+.       +.+.+.|+|++...                 ....++.+..+    ..+|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            44667889999999999998754       56799999986521                 11234444332    2359


Q ss_pred             EEeeeccCCCeEEEEEEEeCCCCce----eEEEEEEeecc-CCeEEEcCCceeecCCCeEEEEEeecCc----CCCeEEE
Q psy11143        286 VLNGVRESDAGVYNCVAQNSEGSAE----SVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGE----PLPRISW  356 (940)
Q Consensus       286 ~I~~v~~~DsG~YtC~A~N~~Gs~~----~s~~l~V~~~~-~P~i~~~p~~~~v~~G~~vtL~C~v~g~----P~p~i~W  356 (940)
                      .|.+++.+|+|.|+|.+.+..+...    ..+.|.|.... +|.+.. +.  .+.+|+.++|.|.+.+.    |.|.|+|
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W  161 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSW  161 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEE
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEE
Confidence            9999999999999999999863221    34566665432 455543 32  36789999999999874    8899999


Q ss_pred             EeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       357 ~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      ++++....... .  ...+.|.|..+..+|.|.|+|.|.|..|....+..+.+
T Consensus       162 ~~~~~~~~~~~-~--~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l  211 (214)
T 2zg1_A          162 TGNALSPLDPE-T--TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL  211 (214)
T ss_dssp             ESSTTSSSCSS-C--CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred             eCCCCccCCCC-c--eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence            99986543221 1  34668999999999999999999998765444444443

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.70  E-value=2.1e-16  Score=164.19  Aligned_cols=174  Identities=16%  Similarity=0.263  Sum_probs=121.0

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEeec-----------------CCCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLD-----------------SDDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~I~-----------------~~~~~~~~~~----gs~L~I~  104 (940)
                      .+|..+.+.+|++++|.|.+.+.|  .+.|.|+|+  +..+.                 ...++.+..+    ...|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            345677899999999999999865  679999997  33221                 1234444322    2468999


Q ss_pred             ccccCCCeEEEEEEEeCCCce--E--EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCC
Q psy11143        105 GVRESDAGVYNCVAQNSEGSA--E--SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDE  176 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~g~~--~--~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g  176 (940)
                      +++.+|+|.|+|.+.+..+..  .  ..+.|.|...  ..|.+...+....+.+|+.++|.|.+.| .|.| .|+|++++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            999999999999999986432  1  2456666652  2355655554456779999999999998 8988 99999988


Q ss_pred             eecccc--Cc----eEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeee
Q psy11143        177 AEFVED--RN----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  224 (940)
Q Consensus       177 ~~i~~~--~~----~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~  224 (940)
                      ..+...  ..    ......+.|.|... ..|.|.|+|.|.|..+.......+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             BCTTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEEEECC
T ss_pred             cccceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEEEecC
Confidence            764211  00    11122346888444 4466999999999888765554443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=163.21  Aligned_cols=157  Identities=21%  Similarity=0.302  Sum_probs=115.5

Q ss_pred             cCCceeecCCCcEEEEEEeCC-CCCCeEEEeeCCeecc---c-c--------------CceEEeeeceEEEeecccCCCc
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFV---E-D--------------RNHKIHRTGSLRLYNIGPQDSG  204 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g-~P~p~ItW~k~g~~i~---~-~--------------~~~~~~~~~sL~I~~v~~~DsG  204 (940)
                      .|..+.+.+|++++|.|.+.+ .+.+.|.|++++..+.   . .              .+..+..+++|.|.+++.+|+|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence            345677889999999999875 4557999999876442   0 0              1333444678999999999999


Q ss_pred             eEEEEEEcCCcceeeeeeeeecCCC--CeeeeCCCeeEEecCC-eEEEEEEEeee-CCCeEEEEECCeecCCCCceEEee
Q psy11143        205 LYRCTASNLLGEDVAEGYLTVTGAP--PIFIQRPVSTTYSTGS-TSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEH  280 (940)
Q Consensus       205 ~YtC~a~N~~g~~s~s~~L~V~~~~--p~~~~~p~~~~v~~G~-~v~L~C~v~G~-P~p~ItW~k~g~~l~~~~~~~~~~  280 (940)
                      .|+|.+.+..+.....+.|.|...+  |.+...+  .....|. .++|.|.+.|. |.|.|+|+++|..+..        
T Consensus        84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~--------  153 (193)
T 2if7_A           84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS--------  153 (193)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES--------
T ss_pred             eEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC--------
Confidence            9999999988876677788887443  2222222  2233465 89999999995 5889999999986632        


Q ss_pred             cCeEEEEeeeccC-CCeEEEEEEEeCCCCcee
Q psy11143        281 DGFVLVLNGVRES-DAGVYNCVAQNSEGSAES  311 (940)
Q Consensus       281 ~g~sL~I~~v~~~-DsG~YtC~A~N~~Gs~~~  311 (940)
                       +..|.|.....+ |+|.|+|.|.|..|..+.
T Consensus       154 -~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~  184 (193)
T 2if7_A          154 -QPNLTVSWDPRISSEQDYTCIAENAVSNLSF  184 (193)
T ss_dssp             -SSEEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred             -CCeEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence             234777655554 899999999999988744

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.70  E-value=3e-16  Score=166.43  Aligned_cols=167  Identities=19%  Similarity=0.290  Sum_probs=118.5

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCE-----ee---------cCCCCeEEEee--ceEEEEcccccC
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN-----SL---------DSDDHVTYEHD--GFVLVLNGVRES  109 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~-----~I---------~~~~~~~~~~~--gs~L~I~~v~~~  109 (940)
                      ..+...|..+.+.+|++|+|.|.+.+.|.+.|.|+|+..     .+         ....++.....  ...|.|.+++.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            345566778889999999999999999999999998531     11         11223333322  235899999999


Q ss_pred             CCeEEEEEEEeCCCceEE-EEEEEEecc-----------------cCCeeEecCCceeecCCCcEEEEEEeCCCC--CCe
Q psy11143        110 DAGVYNCVAQNSEGSAES-VAMIRINGH-----------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPR  169 (940)
Q Consensus       110 DsG~YtC~a~n~~g~~~~-~~~L~V~~~-----------------~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P--~p~  169 (940)
                      |+|.|+|.+.|..+.... ...|.|...                 ..+.+...+....+.+|++++|.|.+.+.|  .+.
T Consensus        85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  164 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW  164 (250)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred             hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence            999999999987654332 345666542                 123445556677899999999999999876  789


Q ss_pred             EEEeeC--Ceeccc-----------------cCceEEeeec-----eEEEeecccCCCceEEEEEEc
Q psy11143        170 ISWSKD--EAEFVE-----------------DRNHKIHRTG-----SLRLYNIGPQDSGLYRCTASN  212 (940)
Q Consensus       170 ItW~k~--g~~i~~-----------------~~~~~~~~~~-----sL~I~~v~~~DsG~YtC~a~N  212 (940)
                      +.|+++  +..+..                 ..++.+..+.     +|.|.+++.+|+|.|+|.+.+
T Consensus       165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            999996  433211                 1344443332     699999999999999999997

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.70  E-value=2.9e-16  Score=168.22  Aligned_cols=176  Identities=16%  Similarity=0.297  Sum_probs=127.9

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeC--CCeEEEEEC--CeecC-----------------CCCceEEeec----CeEEEEee
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLD-----------------SDDHVTYEHD----GFVLVLNG  289 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~--g~~l~-----------------~~~~~~~~~~----g~sL~I~~  289 (940)
                      .|....+.+|++++|.|.+.+.|  .+.|.|+|+  +..+.                 ...++.+..+    ..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            35567889999999999999875  679999994  22210                 1245555432    24699999


Q ss_pred             eccCCCeEEEEEEEeCCCC---ce--eEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC-----eEEEEe-
Q psy11143        290 VRESDAGVYNCVAQNSEGS---AE--SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-----RISWSK-  358 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~Gs---~~--~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-----~i~W~k-  358 (940)
                      ++.+|+|.|+|.|.|..|.   ..  ....|.|.  .+|.+...|....+.+|++++|.|.+.+.|.+     .|.|+| 
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~--~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS--SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC--CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeec--ccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence            9999999999999998763   11  23445554  56777777888889999999999999999876     999999 


Q ss_pred             -CCeeec------------cCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeE-EEEEEEEEecC
Q psy11143        359 -DEAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVTGE  412 (940)
Q Consensus       359 -~g~~i~------------~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V~~~  412 (940)
                       ++..+.            ...++.+..   ..+|.|.+++.+|+|.|+|.|.|..+.. .....|.|..+
T Consensus       164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          164 KPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             CTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             CCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence             554331            124555433   3479999999999999999999964422 22446777644

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.70  E-value=1.3e-16  Score=169.89  Aligned_cols=177  Identities=16%  Similarity=0.202  Sum_probs=128.4

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCc--eEEeeeceEEEeecccCCCceEEEEEEcCC
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~--~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      +.|.+...|.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+.....  ......+.|.|.+++.+|+|.|+|.+.|..
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   83 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   83 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence            45777777766 8899999999999875 4568999999877642110  111234579999999999999999998864


Q ss_pred             cc--eeeeeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeee
Q psy11143        215 GE--DVAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV  290 (940)
Q Consensus       215 g~--~s~s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v  290 (940)
                      +.  .+..+.|.|..  .+|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+..  .......+..|.|.++
T Consensus        84 ~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~--~~~~~~~~~~l~I~~v  159 (242)
T 1p6f_A           84 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV--QRGYGKVQAEFPLGPV  159 (242)
T ss_dssp             EECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE--EEEECSSEEEEEEEEC
T ss_pred             ccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc--cccCCCceEEEEeCCC
Confidence            43  34556666763  245555444 3568899999999998764 469999999987653  1122233456999999


Q ss_pred             ccCCCeEEEEEEEeCC---CCceeEEEEEEee
Q psy11143        291 RESDAGVYNCVAQNSE---GSAESVAMIRING  319 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~---Gs~~~s~~l~V~~  319 (940)
                      +.+|+|.|+|.+.|..   ...+....|.|..
T Consensus       160 ~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          160 TTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             CGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             ccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            9999999999999874   2334456666764

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.70  E-value=3.3e-16  Score=165.79  Aligned_cols=180  Identities=16%  Similarity=0.310  Sum_probs=126.3

Q ss_pred             cCCceeecCCCcEEEEEEeCCCC--CCeEEEeeCC--eec-----------------cccCceEEee-----eceEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKDE--AEF-----------------VEDRNHKIHR-----TGSLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k~g--~~i-----------------~~~~~~~~~~-----~~sL~I~~  197 (940)
                      .+....+.+|++++|.|.+.+.|  .+.|.|+++.  ..+                 ....++.+..     ..+|.|.+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (247)
T 2ghw_B            8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNS   87 (247)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECc
Confidence            34567899999999999999877  6789999832  111                 0123444433     23699999


Q ss_pred             cccCCCceEEEEEEcCCcc--eeeeeeeeecCC--------------CCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeE
Q psy11143        198 IGPQDSGLYRCTASNLLGE--DVAEGYLTVTGA--------------PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM  261 (940)
Q Consensus       198 v~~~DsG~YtC~a~N~~g~--~s~s~~L~V~~~--------------~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~I  261 (940)
                      ++.+|+|.|+|.+.|..+.  ......|.|...              ++.+...+....+.+|++++|.|.+.+.|.+.+
T Consensus        88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v  167 (247)
T 2ghw_B           88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL  167 (247)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             CCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence            9999999999999997332  233456777643              344555667778999999999999999999999


Q ss_pred             EEEE--CCeecC------------CCCceEEeec--CeEEEEeeeccCCCeEEEEEEEeCCCCce-eEEEEEEeeccCC
Q psy11143        262 TWFH--DGNSLD------------SDDHVTYEHD--GFVLVLNGVRESDAGVYNCVAQNSEGSAE-SVAMIRINGHRAP  323 (940)
Q Consensus       262 tW~k--~g~~l~------------~~~~~~~~~~--g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~-~s~~l~V~~~~~P  323 (940)
                      .|+|  ++..+.            ...++.....  ..+|+|.++..+|+|.|+|.|.|...... ....|.|....+|
T Consensus       168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~~~~~p  246 (247)
T 2ghw_B          168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVKSGLVP  246 (247)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEECCSCCC
T ss_pred             EEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEECCCCCC
Confidence            9999  555431            1234444322  23599999999999999999998643322 2345666543333

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.70  E-value=8e-17  Score=171.67  Aligned_cols=184  Identities=15%  Similarity=0.223  Sum_probs=128.4

Q ss_pred             eeCCCeeEEecCCeEEEEEEEeeeC--CCeEEEEEC--Ceec-----------------CCCCceEEeec----CeEEEE
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSL-----------------DSDDHVTYEHD----GFVLVL  287 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~--g~~l-----------------~~~~~~~~~~~----g~sL~I  287 (940)
                      ...+....+.+|++++|.|.+.+.+  .+.+.|+|.  +..+                 ....++.+..+    ..+|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            3446677889999999999998854  779999982  2111                 11234444432    234999


Q ss_pred             eeeccCCCeEEEEEEEeCCCCce-eEEEEEEee-------------ccCCeEEEcCCceeecCCCeEEEEEeecCcCCC-
Q psy11143        288 NGVRESDAGVYNCVAQNSEGSAE-SVAMIRING-------------HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-  352 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs~~-~s~~l~V~~-------------~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-  352 (940)
                      .+++.+|+|.|+|.+.|..+... ....+.|..             ..+|.+...|....+.+|++|+|.|.+.+.|.+ 
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  164 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRY  164 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEET
T ss_pred             CCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccC
Confidence            99999999999999999665542 345566653             135677777888899999999999999999887 


Q ss_pred             ---eEEEEeC--Ceeec------------cCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEEEEec
Q psy11143        353 ---RISWSKD--EAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTG  411 (940)
Q Consensus       353 ---~i~W~k~--g~~i~------------~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~  411 (940)
                         .+.|+|+  +....            ...++....   ..+|.|.+++.+|+|.|+|.|.|..+.... ...|.|.+
T Consensus       165 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~  244 (253)
T 3uzq_A          165 GNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKR  244 (253)
T ss_dssp             TEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             CCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence               9999984  22111            123444433   236999999999999999999996543322 45688887


Q ss_pred             CCCCC
Q psy11143        412 ENSVE  416 (940)
Q Consensus       412 ~~~~~  416 (940)
                      .+..+
T Consensus       245 ~~~~~  249 (253)
T 3uzq_A          245 PLEHH  249 (253)
T ss_dssp             C----
T ss_pred             CCCCc
Confidence            65443

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.70  E-value=5.7e-17  Score=167.28  Aligned_cols=170  Identities=17%  Similarity=0.259  Sum_probs=123.0

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeec------------CCCCeEEE--eeceEEEEcccccCCCe
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD------------SDDHVTYE--HDGFVLVLNGVRESDAG  112 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~------------~~~~~~~~--~~gs~L~I~~v~~~DsG  112 (940)
                      ...| .+.+.+|++++|.|.+.  |.+.|.|+|+  +..+.            ...++.+.  .....|.|.+++.+|+|
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   81 (211)
T 3tv3_L            5 TQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA   81 (211)
T ss_dssp             BCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             EeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE
Confidence            3344 78899999999999998  8889999994  22211            12233333  22346899999999999


Q ss_pred             EEEEEEEeCCCc--eEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC--CCCeEEEeeCCeeccccC---
Q psy11143        113 VYNCVAQNSEGS--AESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE--PLPRISWSKDEAEFVEDR---  183 (940)
Q Consensus       113 ~YtC~a~n~~g~--~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~--P~p~ItW~k~g~~i~~~~---  183 (940)
                      .|+|.+.+..+.  ....+.|.|...  .+|.+...+....+.+|+.++|.|.+.+.  |.+.+.|+++|..+....   
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  161 (211)
T 3tv3_L           82 VYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETT  161 (211)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred             EEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccC
Confidence            999999998873  333556666632  35677776666666689999999999984  357999999998875411   


Q ss_pred             ------ceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143        184 ------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  221 (940)
Q Consensus       184 ------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~  221 (940)
                            .........|.|.++..+|+|.|+|.|.|..+....++
T Consensus       162 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          162 TPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             CCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence                  11112234689999999999999999999877655443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.70  E-value=1.3e-16  Score=169.15  Aligned_cols=173  Identities=17%  Similarity=0.253  Sum_probs=116.9

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeCCCe-----EEEEECCeecCCC--------C-------ceEE-----eecCeEEEEee
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHPLPQ-----MTWFHDGNSLDSD--------D-------HVTY-----EHDGFVLVLNG  289 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P~p~-----ItW~k~g~~l~~~--------~-------~~~~-----~~~g~sL~I~~  289 (940)
                      .+....+..|++++|.|.+.|.|.+.     |.|++++......        .       +..+     .....+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            45567888999999999999988775     9999974322110        0       0000     01122499999


Q ss_pred             eccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCeeeccC-
Q psy11143        290 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVED-  366 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~~i~~~-  366 (940)
                      ++.+|+|.|+|.+.|..+.....+.|.|.  .+|.+...+. .....|+.++|.|.+.| .|.| .|+|++++..+... 
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~--~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~  165 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVV--ASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPI  165 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE--BCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEe--cCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcc
Confidence            99999999999999988877666677765  4777776665 34556788899999999 8999 99999998533211 


Q ss_pred             --------------CcEEEeeeceEEEecCCCCCCeEEEEEEEeCCee--EEEEEEEEEe
Q psy11143        367 --------------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE--DVAEGYLTVT  410 (940)
Q Consensus       367 --------------~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~--~~~s~~L~V~  410 (940)
                                    ........+.|.|.....+|.|.|+|.|.|..+.  ...++.|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~  225 (248)
T 3pv7_A          166 EISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA  225 (248)
T ss_dssp             EECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---
T ss_pred             ccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEc
Confidence                          1111122346888899999999999999999986  5556666663

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.70  E-value=8.1e-17  Score=167.32  Aligned_cols=172  Identities=16%  Similarity=0.261  Sum_probs=120.8

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEEC--CeecC-----------------CCCceEEeec----CeEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLD-----------------SDDHVTYEHD----GFVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~--g~~l~-----------------~~~~~~~~~~----g~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+.|  .+.|.|+|+  +..+.                 ...++.+..+    ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            4566788999999999999875  679999997  33221                 1235554432    246999999


Q ss_pred             ccCCCeEEEEEEEeCCCCc----eeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCee
Q psy11143        291 RESDAGVYNCVAQNSEGSA----ESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAE  362 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~Gs~----~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~~  362 (940)
                      +.+|+|.|+|.+.|..+..    ...+.|.|..  ..+|.+...+....+.+|+.++|.|.+.| .|.| .|+|++++..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  166 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcc
Confidence            9999999999999987422    1244566654  23466665554446778999999999998 8999 9999999875


Q ss_pred             ecc--CCc----EEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        363 FVE--DRN----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       363 i~~--~~~----~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      +..  ...    -.....+.|.|... ..|.|.|+|.|.|..|.......|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          167 SGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             TTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEEEECC
T ss_pred             cceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEEEecC
Confidence            421  110    01112346888444 4466999999999998766555443

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.70  E-value=2e-16  Score=169.22  Aligned_cols=176  Identities=18%  Similarity=0.275  Sum_probs=122.2

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEe---ec-------------CCCCeEEEee----ceEEEEccc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNS---LD-------------SDDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~---I~-------------~~~~~~~~~~----gs~L~I~~v  106 (940)
                      +|..+.+.+|++|+|.|.+.+.|  .+.|.|+|+  +..   +.             ...++.+..+    ...|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence            34556799999999999999875  679999986  221   10             1234444432    246899999


Q ss_pred             ccCCCeEEEEEEEeCCC------ceE---EEEEEEEeccc-------------CCeeEecCCceeecCCCcEEEEEEeCC
Q psy11143        107 RESDAGVYNCVAQNSEG------SAE---SVAMIRINGHR-------------APRLVVKPFDMRAPAGSSVEIPCKPDG  164 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~g------~~~---~~~~L~V~~~~-------------~P~~~~~p~~~~v~~Ge~vtL~C~v~g  164 (940)
                      +.+|+|.|+|.|.|..|      ...   ..+.|.|...+             .+.+...+....+.+|++++|.|.+.+
T Consensus        86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  165 (257)
T 1f3r_B           86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ  165 (257)
T ss_dssp             CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred             CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence            99999999999999854      111   23466776532             122344466778999999999999999


Q ss_pred             CCCCeEEEee--CCeecc------------ccCceEEee---eceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        165 EPLPRISWSK--DEAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       165 ~P~p~ItW~k--~g~~i~------------~~~~~~~~~---~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      .|.+.+.|++  ++..+.            ...++....   ..+|.|.+++.+|+|.|+|.|.|........+.|.|.
T Consensus       166 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~  244 (257)
T 1f3r_B          166 NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELK  244 (257)
T ss_dssp             CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred             cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence            8888999999  554331            023333322   2379999999999999999999865222233455554

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.69  E-value=3.1e-16  Score=159.53  Aligned_cols=156  Identities=13%  Similarity=0.239  Sum_probs=118.0

Q ss_pred             CCeeEEecCCeEEEEEEEe--eeCCCeEEEEE--CCeec----------CCCCceEEeecCeEEEEeeeccCCCeEEEEE
Q psy11143        236 PVSTTYSTGSTSRITCLVE--GHPLPQMTWFH--DGNSL----------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCV  301 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~--G~P~p~ItW~k--~g~~l----------~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~  301 (940)
                      ........|++|+|.|...  +.+.+.|.|++  ++..+          ....++.+..+|+ |.|.+++.+|+|.|+|.
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngs-L~I~~v~~~DsG~Y~c~   84 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT-LKIKHLKTDDQDIYKVS   84 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSC-EEECSCCGGGCEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCC-EEECCCChhhCEEEEEE
Confidence            3456678999999999542  34567999999  88776          3456777777775 99999999999999999


Q ss_pred             EEeCCCCcee--EEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEE
Q psy11143        302 AQNSEGSAES--VAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR  378 (940)
Q Consensus       302 A~N~~Gs~~~--s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~  378 (940)
                      |.|..|....  .+.|.|... .+|.+...        +.+++|.|.+.+.|.|.|.|+++|..+ ..      ....|.
T Consensus        85 ~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~--------~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~------~~~~i~  149 (182)
T 1hnf_A           85 IYDTKGKNVLEKIFDLKIQERVSKPKISWT--------CINTTLTCEVMNGTDPELNLYQDGKHL-KL------SQRVIT  149 (182)
T ss_dssp             EEETTSCEEEEEEEEEEEECCCCCCEEEEE--------TTTTEEEEECSSCSSCEEEEEESSCEE-EE------ESSCEE
T ss_pred             EEeCCCceeEEEEEEEEEcCcCCCCEEEEc--------cCcEEEEeEccCCCCCEEEEEECCEEC-CC------CCcEEE
Confidence            9999887654  445666532 23444432        237999999999999999999999877 11      222444


Q ss_pred             EecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       379 I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      +.. ..+|+|.|+|.|.|..|.......+.
T Consensus       150 ~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          150 HKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             EEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             Eec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            433 57899999999999999988877664

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.69  E-value=3.8e-16  Score=164.27  Aligned_cols=166  Identities=20%  Similarity=0.341  Sum_probs=118.2

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEee---------------cCCCCeEEEe---eceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL---------------DSDDHVTYEH---DGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I---------------~~~~~~~~~~---~gs~L~I~~v~  107 (940)
                      +...|..+.+.+|++|+|.|. .+.|.+.|.|+|+  +..+               ....++.+..   ....|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            455678889999999999999 7888899999995  2111               1123444432   23468999999


Q ss_pred             cCCCeEEEEEEEeCCCce---E--EEEEEEEecccC----------CeeEecCCceeecCCCcEEEEEEeCCCCCCeEEE
Q psy11143        108 ESDAGVYNCVAQNSEGSA---E--SVAMIRINGHRA----------PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW  172 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g~~---~--~~~~L~V~~~~~----------P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW  172 (940)
                      .+|+|.|+|.+.|..|..   .  ....|.|.....          +.+...+....+.+|++++|.|.+.+.|.+.+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            999999999999876521   1  134566654321          1556667788899999999999999999999999


Q ss_pred             eeCCe--ec------------cccCceEEee-----eceEEEeecccCCCceEEEEEEcCC
Q psy11143        173 SKDEA--EF------------VEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       173 ~k~g~--~i------------~~~~~~~~~~-----~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      ++++.  ..            ....++....     ..+|.|.+++.+|+|.|+|.|.|..
T Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99531  11            1123343331     2479999999999999999999863

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.69  E-value=6.2e-16  Score=165.58  Aligned_cols=176  Identities=16%  Similarity=0.287  Sum_probs=124.9

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEeec-----------------CCCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLD-----------------SDDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~I~-----------------~~~~~~~~~~----gs~L~I~  104 (940)
                      .+|..+.+.+|++|+|.|.+.+.|  .+.|.|+|+  +..+.                 ...++.+..+    ...|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            446678899999999999998875  579999994  22210                 1234444432    2468999


Q ss_pred             ccccCCCeEEEEEEEeCCCc---eEE--EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCC-----eEEEee
Q psy11143        105 GVRESDAGVYNCVAQNSEGS---AES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-----RISWSK  174 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~g~---~~~--~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p-----~ItW~k  174 (940)
                      +++.+|+|.|+|.+.|..|.   ...  .+.|.|.  ..|.+...|....+.+|++++|.|.+.+.|.+     .+.|+|
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~--~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k  162 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS--SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL  162 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC--CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeec--ccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence            99999999999999998663   111  3455554  45666677778889999999999999998765     999999


Q ss_pred             --CCeecc------------ccCceEEee---eceEEEeecccCCCceEEEEEEcCCcc-eeeeeeeeecC
Q psy11143        175 --DEAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGE-DVAEGYLTVTG  227 (940)
Q Consensus       175 --~g~~i~------------~~~~~~~~~---~~sL~I~~v~~~DsG~YtC~a~N~~g~-~s~s~~L~V~~  227 (940)
                        ++..+.            ...++....   ..+|.|.+++.+|+|.|+|.+.+.... -...+.|.|..
T Consensus       163 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          163 QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             ECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             ECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence              555431            022333322   346999999999999999999885332 22334566653

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.69  E-value=1.8e-16  Score=168.01  Aligned_cols=172  Identities=17%  Similarity=0.241  Sum_probs=114.7

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCe-----EEEEECCEeecC---------------CCCeEEE-----eeceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQ-----MTWFHDGNSLDS---------------DDHVTYE-----HDGFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~-----V~W~kdg~~I~~---------------~~~~~~~-----~~gs~L~I~~  105 (940)
                      .|..+.+.+|+.++|.|.+.+.|.+.     |.|+|++.....               ..+.++.     .....|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            45567899999999999999887765     999996432210               0011111     1122389999


Q ss_pred             cccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCCeecccc-
Q psy11143        106 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVED-  182 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g~~i~~~-  182 (940)
                      ++.+|+|.|+|.+.+..+.....+.|.|..  +|.+...+. ..+..|+.+.|.|.+.+ .|.+ .|+|++++..+... 
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~--~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~  165 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVA--SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPI  165 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEB--CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEec--CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcc
Confidence            999999999999999887766677777765  566665554 34556788889999998 8988 99999988643211 


Q ss_pred             --------------CceEEeeeceEEEeecccCCCceEEEEEEcCCcceee--eeeeee
Q psy11143        183 --------------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA--EGYLTV  225 (940)
Q Consensus       183 --------------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~--s~~L~V  225 (940)
                                    ....+.....|.|.....+|.|.|+|.|.|..+....  .+.|.|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          166 EISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             EECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             ccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence                          1112223346888888899999999999999887444  444444

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.69  E-value=3.7e-16  Score=169.07  Aligned_cols=183  Identities=17%  Similarity=0.298  Sum_probs=127.5

Q ss_pred             CeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCe-----ec---------CCCCceEEeecC--eEEEEeeeccC
Q psy11143        230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN-----SL---------DSDDHVTYEHDG--FVLVLNGVRES  293 (940)
Q Consensus       230 p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~-----~l---------~~~~~~~~~~~g--~sL~I~~v~~~  293 (940)
                      +.+...|....+.+|++++|.|.+.+.|.+.|.|+|++.     .+         ....++.+..++  .+|.|.+++.+
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   92 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE   92 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChh
Confidence            345556778889999999999999999999999998642     11         113355544332  35999999999


Q ss_pred             CCeEEEEEEEeCCCCc-eeEEEEEEeec------------cCCeEEEcCCceeecCCCeEEEEEeecCcC--CCeEEEEe
Q psy11143        294 DAGVYNCVAQNSEGSA-ESVAMIRINGH------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISWSK  358 (940)
Q Consensus       294 DsG~YtC~A~N~~Gs~-~~s~~l~V~~~------------~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k  358 (940)
                      |+|.|+|.|.|..+.. .....|.|...            .++..+..|....+.+|++++|.|.+.+.|  .+.|.|+|
T Consensus        93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k  172 (276)
T 3auv_A           93 DFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVR  172 (276)
T ss_dssp             GCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             hCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEE
Confidence            9999999999976542 22345665542            122334456678899999999999999887  48999999


Q ss_pred             CC--eee-----------------ccCCcEEEeee-----ceEEEecCCCCCCeEEEEEEEeCC---ee--EEEEEEEEE
Q psy11143        359 DE--AEF-----------------VEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLL---GE--DVAEGYLTV  409 (940)
Q Consensus       359 ~g--~~i-----------------~~~~~~~i~~~-----~sL~I~~v~~~D~G~YtC~A~N~~---G~--~~~s~~L~V  409 (940)
                      ++  ...                 ....++.+..+     .+|.|.+++.+|+|.|+|.|.|..   +.  -.....|.|
T Consensus       173 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V  252 (276)
T 3auv_A          173 QAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTV  252 (276)
T ss_dssp             ECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEE
T ss_pred             cCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEE
Confidence            63  111                 01346666543     279999999999999999999983   21  112356777


Q ss_pred             ecC
Q psy11143        410 TGE  412 (940)
Q Consensus       410 ~~~  412 (940)
                      ...
T Consensus       253 ~~~  255 (276)
T 3auv_A          253 SSA  255 (276)
T ss_dssp             C--
T ss_pred             ccc
Confidence            643

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.69  E-value=4.7e-16  Score=164.99  Aligned_cols=166  Identities=19%  Similarity=0.299  Sum_probs=118.9

Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCe-----e---------cCCCCceEEeecC--eEEEEeeeccCC
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN-----S---------LDSDDHVTYEHDG--FVLVLNGVRESD  294 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~-----~---------l~~~~~~~~~~~g--~sL~I~~v~~~D  294 (940)
                      .+...|....+.+|++++|.|.+.+.|.+.+.|+|+..     .         .....++.....+  .+|.|.+++.+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            34455677889999999999999999999999998531     0         1112344433322  359999999999


Q ss_pred             CeEEEEEEEeCCCCce-eEEEEEEeec-----------------cCCeEEEcCCceeecCCCeEEEEEeecCcC--CCeE
Q psy11143        295 AGVYNCVAQNSEGSAE-SVAMIRINGH-----------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRI  354 (940)
Q Consensus       295 sG~YtC~A~N~~Gs~~-~s~~l~V~~~-----------------~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P--~p~i  354 (940)
                      +|.|+|.|.|..+... ....|.|...                 .+|.+...+....+.+|++++|.|.+.+.|  .+.+
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  165 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWM  165 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEE
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEE
Confidence            9999999998765432 2345666532                 233444556667899999999999999877  7899


Q ss_pred             EEEeC--Ceeec-----------------cCCcEEEeeec-----eEEEecCCCCCCeEEEEEEEe
Q psy11143        355 SWSKD--EAEFV-----------------EDRNHKIHRTG-----SLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       355 ~W~k~--g~~i~-----------------~~~~~~i~~~~-----sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .|+|+  +..+.                 ...++.+..++     +|.|.+++.+|+|.|+|.|.|
T Consensus       166 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          166 NWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            99997  33221                 12456655433     699999999999999999997

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.68  E-value=4.5e-16  Score=166.13  Aligned_cols=179  Identities=17%  Similarity=0.270  Sum_probs=126.8

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eec-----------------CCCCceEEeec----CeEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL-----------------DSDDHVTYEHD----GFVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l-----------------~~~~~~~~~~~----g~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+.+  .+.+.|++..  ..+                 ....++.+..+    ..+|.|.++
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            3446688999999999999866  6799999842  111                 01234444432    234999999


Q ss_pred             ccCCCeEEEEEEEeC----CCCceeEEEEEEeec--------------cCCeEEEcCCceeecCCCeEEEEEeecCcCCC
Q psy11143        291 RESDAGVYNCVAQNS----EGSAESVAMIRINGH--------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP  352 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~----~Gs~~~s~~l~V~~~--------------~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p  352 (940)
                      +.+|+|.|.|.+.|.    .+.......|.|...              .+|.+...|....+.+|++|+|.|.+.+.|.+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  168 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS  168 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence            999999999999987    233333456666532              26778888888899999999999999999999


Q ss_pred             eEEEEeC--Ceeec------------cCCcEEEeee---ceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEEEEecCCC
Q psy11143        353 RISWSKD--EAEFV------------EDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGENS  414 (940)
Q Consensus       353 ~i~W~k~--g~~i~------------~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~~~~  414 (940)
                      .+.|+|.  +....            ...++.+...   .+|.|.+++.+|+|.|+|.|.|..+.... .+.|.|++.+.
T Consensus       169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~~  248 (256)
T 3umt_A          169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAAA  248 (256)
T ss_dssp             CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC----
T ss_pred             EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCCc
Confidence            9999984  22111            1245554433   35999999999999999999996554333 46788887643

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.68  E-value=1.6e-15  Score=162.17  Aligned_cols=181  Identities=20%  Similarity=0.302  Sum_probs=128.3

Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC--eec-------------CCCCceEEe----ecCeEEEEeeec
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL-------------DSDDHVTYE----HDGFVLVLNGVR  291 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g--~~l-------------~~~~~~~~~----~~g~sL~I~~v~  291 (940)
                      .+...|....+.+|++++|.|.+.+.|.+.+.|+|..  ...             ....++.+.    ....+|.|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            3455677788999999999999999999999999832  111             112233332    122359999999


Q ss_pred             cCCCeEEEEEEEeCCCCce----eEEEEEEee------------------ccCCeEEEcCCceeecCCCeEEEEEeecCc
Q psy11143        292 ESDAGVYNCVAQNSEGSAE----SVAMIRING------------------HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE  349 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs~~----~s~~l~V~~------------------~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~  349 (940)
                      .+|+|.|+|.+.|..+...    ....|.|..                  ..+|.+...|....+.+|++++|.|.+.+.
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  164 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS  164 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence            9999999999999865322    234566653                  246778888888888999999999999987


Q ss_pred             CCCeEEEEeCC--ee---ec------------cCCcEEEee----eceEEEecCCCCCCeEEEEEEEeCCeeEEE--EEE
Q psy11143        350 PLPRISWSKDE--AE---FV------------EDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVA--EGY  406 (940)
Q Consensus       350 P~p~i~W~k~g--~~---i~------------~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~--s~~  406 (940)
                       .|.+.|+|..  ..   +.            ...++.+..    ..+|.|.+++.+|+|.|+|.|.|..|....  ...
T Consensus       165 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~  243 (256)
T 3tf7_C          165 -HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSK  243 (256)
T ss_dssp             -CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEE
T ss_pred             -ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeE
Confidence             6799999832  11   10            022333322    337999999999999999999998775543  345


Q ss_pred             EEEecC
Q psy11143        407 LTVTGE  412 (940)
Q Consensus       407 L~V~~~  412 (940)
                      |.|...
T Consensus       244 l~v~~~  249 (256)
T 3tf7_C          244 LTVLEL  249 (256)
T ss_dssp             EEEECG
T ss_pred             EEEEcc
Confidence            666643

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=4.7e-17  Score=168.01  Aligned_cols=166  Identities=16%  Similarity=0.273  Sum_probs=120.0

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeec------------CCCCeEEEe--eceEEEEcccccCCCeEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD------------SDDHVTYEH--DGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~------------~~~~~~~~~--~gs~L~I~~v~~~DsG~Yt  115 (940)
                      |..+.+.+|+.++|.|.+.+.|.+.|.|+|+  |..+.            ...++.+..  ....|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            7788999999999999998888788999985  33221            023444432  2246899999999999999


Q ss_pred             EEEEeCCCce-E--EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CC-CeEEEeeCCeeccccCceE--
Q psy11143        116 CVAQNSEGSA-E--SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEAEFVEDRNHK--  186 (940)
Q Consensus       116 C~a~n~~g~~-~--~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~-p~ItW~k~g~~i~~~~~~~--  186 (940)
                      |.+.|..+.. .  ....+.|...  .+|.+...+....+.+|+.++|.|.+.|. |. +.|+|+++|..+.......  
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  165 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP  165 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence            9999732222 1  1345666432  34666665555556689999999999986 54 7999999998875432100  


Q ss_pred             ------EeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        187 ------IHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       187 ------~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                            ....+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       166 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          166 SKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             BCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             eecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence                  2223569999999999999999999987653

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=3.9e-17  Score=168.61  Aligned_cols=165  Identities=16%  Similarity=0.288  Sum_probs=120.7

Q ss_pred             CCeeEEecCCeEEEEEEEeeeCCCeEEEEEC--CeecC------------CCCceEEeec--CeEEEEeeeccCCCeEEE
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD------------SDDHVTYEHD--GFVLVLNGVRESDAGVYN  299 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~--g~~l~------------~~~~~~~~~~--g~sL~I~~v~~~DsG~Yt  299 (940)
                      |....+.+|++++|.|.+.+.|.+.|.|+|+  +..+.            ...++.+...  ..+|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            6677899999999999998888889999985  33221            1244544433  236999999999999999


Q ss_pred             EEEEeCCCCc---eeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CC-CeEEEEeCCeeeccCCcEE--
Q psy11143        300 CVAQNSEGSA---ESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEAEFVEDRNHK--  370 (940)
Q Consensus       300 C~A~N~~Gs~---~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~-p~i~W~k~g~~i~~~~~~~--  370 (940)
                      |.|.|..+..   .....+.|..  ..+|.+...+....+.+|+.++|.|.+.|. |. |.|+|+|+|..+.......  
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  165 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP  165 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence            9999842221   1223455532  356777765554455679999999999987 55 7999999998875432100  


Q ss_pred             ------EeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        371 ------IHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       371 ------i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                            ....++|.|.++..+|+|.|+|.|.|..+.
T Consensus       166 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          166 SKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             BCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             eecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence                  122357999999999999999999998765

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.68  E-value=2.4e-16  Score=163.30  Aligned_cols=169  Identities=15%  Similarity=0.274  Sum_probs=117.7

Q ss_pred             CCCcEEEecCCeEEEEEEee-ccC-CCeEEEEECC--Eeec------------CCCCeEEEe--eceEEEEcccccCCCe
Q psy11143         51 RPVSTTYSTGSTSRITCLVE-GHP-LPQMTWFHDG--NSLD------------SDDHVTYEH--DGFVLVLNGVRESDAG  112 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~-g~P-~p~V~W~kdg--~~I~------------~~~~~~~~~--~gs~L~I~~v~~~DsG  112 (940)
                      +|..+.+.+|++++|.|.+. +.+ .+.|.|+|++  ..+.            ...++....  ....|.|.+++.+|+|
T Consensus         6 qp~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            6 QPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            36778899999999999964 442 5799999954  2110            122344332  2346899999999999


Q ss_pred             EEEEEEEeCCCce--EEEEEEEEecc-cCCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCCeecccc-Cc--
Q psy11143        113 VYNCVAQNSEGSA--ESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVED-RN--  184 (940)
Q Consensus       113 ~YtC~a~n~~g~~--~~~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g~~i~~~-~~--  184 (940)
                      .|+|.+.|..+..  .....|.|... .+|.+...+....+..|+.++|.|.+.| .|.+ .|+|+++|..+... ..  
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~  165 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESV  165 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEE
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEec
Confidence            9999999987621  12445666543 3466665444333446899999999998 5554 89999999877543 10  


Q ss_pred             -------eEEeeeceEEEeecccCCCceEEEEEEcCCcceee
Q psy11143        185 -------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA  219 (940)
Q Consensus       185 -------~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~  219 (940)
                             ..+...+.|.|..+..+|+|.|+|.|.|.......
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (216)
T 2xzc_L          166 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  207 (216)
T ss_dssp             CCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             CcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCce
Confidence                   11122346999999999999999999997755443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.68  E-value=7.5e-16  Score=166.68  Aligned_cols=170  Identities=17%  Similarity=0.298  Sum_probs=121.1

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCE-----eec---------CCCCeEEEee--ceEEEEccccc
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN-----SLD---------SDDHVTYEHD--GFVLVLNGVRE  108 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~-----~I~---------~~~~~~~~~~--gs~L~I~~v~~  108 (940)
                      .+.+...|..+.+.+|++|+|.|.+.+.|.+.|.|+|++.     .+.         ...++.....  ...|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            4556777888999999999999999998889999998642     121         1234444322  23689999999


Q ss_pred             CCCeEEEEEEEeCCCceE-EEEEEEEeccc------------CCeeEecCCceeecCCCcEEEEEEeCCCC--CCeEEEe
Q psy11143        109 SDAGVYNCVAQNSEGSAE-SVAMIRINGHR------------APRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISWS  173 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g~~~-~~~~L~V~~~~------------~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~  173 (940)
                      +|+|.|+|.+.|..+... ..+.|.|...+            ++.+...+....+.+|++++|.|.+.+.|  .+.+.|+
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  171 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV  171 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence            999999999998755422 23456665432            12334455678899999999999999876  5899999


Q ss_pred             eCC--eec-----------------cccCceEEeee-----ceEEEeecccCCCceEEEEEEcCC
Q psy11143        174 KDE--AEF-----------------VEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       174 k~g--~~i-----------------~~~~~~~~~~~-----~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      +++  ..+                 ....++.+..+     .+|.|.+++.+|+|.|+|.+.|..
T Consensus       172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  236 (276)
T 3auv_A          172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF  236 (276)
T ss_dssp             EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence            953  211                 01234444432     279999999999999999999973

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.68  E-value=2.5e-16  Score=162.14  Aligned_cols=173  Identities=17%  Similarity=0.216  Sum_probs=119.3

Q ss_pred             CCeeEEecCCeEEEEEEEeeeCCC---eEEEEECCeecC----------------CCCceEE---------eecCeEEEE
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLD----------------SDDHVTY---------EHDGFVLVL  287 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P~p---~ItW~k~g~~l~----------------~~~~~~~---------~~~g~sL~I  287 (940)
                      |....+..|++++|.|.+.+.+.+   .|+|+|++..+.                ...+...         .....+|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            445678899999999999987766   489999865431                0011111         011234999


Q ss_pred             eeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeeccC
Q psy11143        288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVED  366 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~~  366 (940)
                      .+++.+|+|.|+|.|.|..+.........+ ...+|.+...+.......++.+.+.|.+ .+.|.+.+.|++++..+...
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~  166 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLR-VIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKD  166 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEE-EEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeee-eecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCC
Confidence            999999999999999998776655433222 2345555555555566677777777764 56788899999987654332


Q ss_pred             CcEEE------eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143        367 RNHKI------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       367 ~~~~i------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V  409 (940)
                      .....      ...+.|.|.++..+|+|.|+|.|+|..|....++.+++
T Consensus       167 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          167 TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            22211      12346999999999999999999999887655554444

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.68  E-value=1.9e-16  Score=164.95  Aligned_cols=172  Identities=15%  Similarity=0.252  Sum_probs=122.8

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eecC-------------------CCCceEEeec----CeEEEEe
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSLD-------------------SDDHVTYEHD----GFVLVLN  288 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l~-------------------~~~~~~~~~~----g~sL~I~  288 (940)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|+.  ..+.                   ...++.+..+    ..+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            3456788999999999999865  6799999853  2110                   1235555432    2369999


Q ss_pred             eeccCCCeEEEEEEEeCCC-----CceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeC
Q psy11143        289 GVRESDAGVYNCVAQNSEG-----SAESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKD  359 (940)
Q Consensus       289 ~v~~~DsG~YtC~A~N~~G-----s~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~  359 (940)
                      +++.+|+|.|.|.+.|..+     .......|.|..  ..+|.+...+....+.+|+.++|.|.+.|. |.| .|+|+++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  166 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  166 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence            9999999999999999764     222334666654  245666655444456789999999999986 988 9999999


Q ss_pred             CeeeccCCcE------EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        360 EAEFVEDRNH------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       360 g~~i~~~~~~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      |..+......      .....+.|.|..+..+| |.|+|.|.|..|.......|.
T Consensus       167 g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~  220 (222)
T 1q9r_B          167 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  220 (222)
T ss_dssp             TBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             CeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence            8754321100      11223579999999899 999999999999766555443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.68  E-value=5.5e-16  Score=163.22  Aligned_cols=165  Identities=18%  Similarity=0.345  Sum_probs=121.7

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeC----CCeEEEEECC--eec------------CCCCceEEeecC--eEEEEeeec
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDG--NSL------------DSDDHVTYEHDG--FVLVLNGVR  291 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P----~p~ItW~k~g--~~l------------~~~~~~~~~~~g--~sL~I~~v~  291 (940)
                      +...|....+.+|++++|.|.+.+.|    .+.|.|+|+.  ..+            ....++.+...+  .+|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            44556778899999999999999988    7899999962  211            012345544332  359999999


Q ss_pred             cCCCeEEEEEEEeCCCC-ceeEEEEEEeecc----CCeEEEcCCceeecCCCeEEEEEeecCcCC--CeEEEEeC--Cee
Q psy11143        292 ESDAGVYNCVAQNSEGS-AESVAMIRINGHR----APRLVVKPFDMRAPAGSSVEIPCKPDGEPL--PRISWSKD--EAE  362 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs-~~~s~~l~V~~~~----~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~--p~i~W~k~--g~~  362 (940)
                      .+|+|.|+|.|.|..+. ....+.|.|....    ++.+...+....+.+|++++|.|.+.+.|.  +.|.|+|+  +..
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~  163 (240)
T 1moe_A           84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQG  163 (240)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred             hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCC
Confidence            99999999999998664 3344567776532    234555677788999999999999999874  59999995  221


Q ss_pred             e------c-----------cCCcEEEeee-----ceEEEecCCCCCCeEEEEEEEe
Q psy11143        363 F------V-----------EDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       363 i------~-----------~~~~~~i~~~-----~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .      .           ...++.+..+     .+|.|.+++.+|+|.|+|.|.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          164 LEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             cEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            1      0           1235555443     4799999999999999999985

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.68  E-value=7.8e-16  Score=158.78  Aligned_cols=172  Identities=17%  Similarity=0.254  Sum_probs=122.8

Q ss_pred             eeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCC--eec------------cccCceEEee---eceEEEeecccCC
Q psy11143        140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--AEF------------VEDRNHKIHR---TGSLRLYNIGPQD  202 (940)
Q Consensus       140 ~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g--~~i------------~~~~~~~~~~---~~sL~I~~v~~~D  202 (940)
                      .+...+....+.+|++++|.|.+.+.|.+.+.|++.+  ...            ....++....   ..+|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence            4555677889999999999999999999999999832  111            0123443332   3379999999999


Q ss_pred             CceEEEEEEcCCcc-eeeeeeeeec--CCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC--eEEEEECCeecCCCC--c
Q psy11143        203 SGLYRCTASNLLGE-DVAEGYLTVT--GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDD--H  275 (940)
Q Consensus       203 sG~YtC~a~N~~g~-~s~s~~L~V~--~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~--~  275 (940)
                      +|.|+|.+.|..+. ......|.|.  ..+|.+...+....+..|+.++|.|.+.|.+++  .++|+++|..+....  .
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  162 (213)
T 3r06_A           83 IGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQS  162 (213)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEE
T ss_pred             CEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEec
Confidence            99999999987543 2334455553  245666665655566678899999999987643  899999999887531  1


Q ss_pred             eEE--eecC-----eEEEEeeeccCCCeEEEEEEEeCCCCcee
Q psy11143        276 VTY--EHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAES  311 (940)
Q Consensus       276 ~~~--~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~  311 (940)
                      ...  ..++     ..|.|.....+|+|.|+|.|.|.......
T Consensus       163 ~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~  205 (213)
T 3r06_A          163 VTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAI  205 (213)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE
T ss_pred             cCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcce
Confidence            111  1112     24778888888999999999998765443

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.67  E-value=3.1e-16  Score=167.01  Aligned_cols=173  Identities=17%  Similarity=0.292  Sum_probs=123.3

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccC-----CCeEEEEECCE--ee------------cCCCCeEEEee--ceEEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDGN--SL------------DSDDHVTYEHD--GFVLVL  103 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P-----~p~V~W~kdg~--~I------------~~~~~~~~~~~--gs~L~I  103 (940)
                      .+.+...|..+.+.+|++|+|.|.+.+.|     .+.|.|+|++.  .+            ....++.+...  ...|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            45566668889999999999999999887     68999999641  11            01234443322  236899


Q ss_pred             cccccCCCeEEEEEEEeCCCceEE-EEEEEEecc-cCCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCCeec
Q psy11143        104 NGVRESDAGVYNCVAQNSEGSAES-VAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEF  179 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~-~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g~~i  179 (940)
                      .+++.+|+|.|+|.+.+..+.... ...|.|... .+|.+...+....+.+|+.++|.|.+.+ .|.+ .|+|+++|..+
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  193 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  193 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence            999999999999999987654322 345666543 2466666554444557999999999988 4554 79999999877


Q ss_pred             ccc-C---------ceEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        180 VED-R---------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       180 ~~~-~---------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      ... .         .........|.|.++..+|+|.|+|.|.|.....
T Consensus       194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            543 0         0111223469999999999999999999976543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.67  E-value=8.9e-17  Score=166.34  Aligned_cols=155  Identities=19%  Similarity=0.264  Sum_probs=108.7

Q ss_pred             ecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecC--
Q psy11143        150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG--  227 (940)
Q Consensus       150 v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~--  227 (940)
                      +.+|++++|.|.+   |.+.|+|+|+|..+...    ...+++|.|.+++.+|+|.|+|.+.+..   +....|.+..  
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~v~v~~~~   84 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL----TEDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQVYYRMGS   84 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE----ESSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEEEEEEC--
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC----CCCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEEEEEEEec
Confidence            4589999999998   78899999999887532    1234679999999999999999975432   2223333330  


Q ss_pred             ----------------------------CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCC-ceEE
Q psy11143        228 ----------------------------APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTY  278 (940)
Q Consensus       228 ----------------------------~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~-~~~~  278 (940)
                                                  .++.+...+ .....+|++++|.|.  |.|.|.|+|+|++..+.... ...+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~  161 (204)
T 1sy6_A           85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNI  161 (204)
T ss_dssp             ----------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTE
T ss_pred             cccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceE
Confidence                                        011122222 222338999999998  88999999999999886542 1122


Q ss_pred             eecCeEEEEeee-ccCCCeEEEEEEEeCCCCc-eeEEEEEE
Q psy11143        279 EHDGFVLVLNGV-RESDAGVYNCVAQNSEGSA-ESVAMIRI  317 (940)
Q Consensus       279 ~~~g~sL~I~~v-~~~DsG~YtC~A~N~~Gs~-~~s~~l~V  317 (940)
                      ...+.+|.|.++ ..+|+|.|+|.|.|..|.. +....|.+
T Consensus       162 ~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          162 GSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             EEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            223445999999 9999999999999999963 33444443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.67  E-value=3.8e-16  Score=160.73  Aligned_cols=173  Identities=18%  Similarity=0.271  Sum_probs=119.3

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCC---eEEEEECCEeecC----------------CCCeEEE---------eeceEEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDS----------------DDHVTYE---------HDGFVLVL  103 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p---~V~W~kdg~~I~~----------------~~~~~~~---------~~gs~L~I  103 (940)
                      |.++.+.+|++|+|.|.+.+.+.+   .|+|+|++..+..                ..+..+.         .....|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            345678999999999999887765   4899998754310                0111111         12234899


Q ss_pred             cccccCCCeEEEEEEEeCCCceEEE-EEEEEecccCCeeEecCCceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccc
Q psy11143        104 NGVRESDAGVYNCVAQNSEGSAESV-AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVE  181 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g~~~~~-~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~  181 (940)
                      .+++.+|+|.|+|.+.+..+..... ..+.+.  .+|.....+.......++.+.+.|.+. +.|.+.+.|++++..+..
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~  165 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVI--AQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAK  165 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE--BCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeee--cCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccC
Confidence            9999999999999999987765553 333333  344555555556677788888877765 578889999998765543


Q ss_pred             cCceE------EeeeceEEEeecccCCCceEEEEEEcCCcceee--eeeeeec
Q psy11143        182 DRNHK------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA--EGYLTVT  226 (940)
Q Consensus       182 ~~~~~------~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~--s~~L~V~  226 (940)
                      .....      ....+.|.|.++..+|+|.|+|.|+|..+....  ++.|.|.
T Consensus       166 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~  218 (225)
T 4fmk_A          166 DTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR  218 (225)
T ss_dssp             EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred             CcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence            22111      122346999999999999999999998877544  4455554

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.67  E-value=5e-16  Score=161.80  Aligned_cols=173  Identities=15%  Similarity=0.245  Sum_probs=122.1

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Ee---e---c-------------CCCCeEEEee----ceEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---L---D-------------SDDHVTYEHD----GFVLVL  103 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~---I---~-------------~~~~~~~~~~----gs~L~I  103 (940)
                      +|..+.+.+|++++|.|.+.+.|  .+.|.|+|+.  ..   +   .             ...++.+..+    ...|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence            34566789999999999998865  6799999853  21   1   0             1234444432    246899


Q ss_pred             cccccCCCeEEEEEEEeCCC-----ceEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEee
Q psy11143        104 NGVRESDAGVYNCVAQNSEG-----SAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSK  174 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g-----~~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k  174 (940)
                      .+++.+|+|.|.|.+.+..+     .....+.|.|...  ..|.+...+....+.+|+.++|.|.+.|. |.| .|+|++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  165 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEec
Confidence            99999999999999998764     1222456666642  34666555444456789999999999984 888 999999


Q ss_pred             CCeeccccCce------EEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeee
Q psy11143        175 DEAEFVEDRNH------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  224 (940)
Q Consensus       175 ~g~~i~~~~~~------~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~  224 (940)
                      ++..+......      .....+.|.|.++..+| |.|+|.|.|..+.......+.
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~  220 (222)
T 1q9r_B          166 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  220 (222)
T ss_dssp             GTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             CCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence            98765321100      12223468999999889 999999999988766555443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.67  E-value=6.2e-16  Score=162.83  Aligned_cols=166  Identities=19%  Similarity=0.344  Sum_probs=120.5

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccC----CCeEEEEECC--Ee---ec---------CCCCeEEEee--ceEEEEccc
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDG--NS---LD---------SDDHVTYEHD--GFVLVLNGV  106 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P----~p~V~W~kdg--~~---I~---------~~~~~~~~~~--gs~L~I~~v  106 (940)
                      .+...|..+.+.+|++|+|.|.+.+.|    .+.|.|+|++  ..   +.         ...++.+...  ...|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            355667888999999999999999987    7899999952  21   10         1234444322  236899999


Q ss_pred             ccCCCeEEEEEEEeCCCc-eEEEEEEEEeccc----CCeeEecCCceeecCCCcEEEEEEeCCCC--CCeEEEeeC--Ce
Q psy11143        107 RESDAGVYNCVAQNSEGS-AESVAMIRINGHR----APRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKD--EA  177 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~g~-~~~~~~L~V~~~~----~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k~--g~  177 (940)
                      +.+|+|.|+|.+.|..+. ....+.|.|...+    ++.+...+....+.+|++++|.|.+.+.|  .+.+.|+++  +.
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence            999999999999998654 2235567776543    23345567778899999999999999877  359999995  22


Q ss_pred             ecc-----------------ccCceEEeee-----ceEEEeecccCCCceEEEEEEc
Q psy11143        178 EFV-----------------EDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASN  212 (940)
Q Consensus       178 ~i~-----------------~~~~~~~~~~-----~sL~I~~v~~~DsG~YtC~a~N  212 (940)
                      .+.                 ...++....+     .+|.|.+++.+|+|.|+|.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            220                 1223444332     4699999999999999999985

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.67  E-value=8.7e-16  Score=160.85  Aligned_cols=176  Identities=17%  Similarity=0.257  Sum_probs=124.1

Q ss_pred             CeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCC--eec------------cccCceEEe---eeceEEEeecccC
Q psy11143        139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--AEF------------VEDRNHKIH---RTGSLRLYNIGPQ  201 (940)
Q Consensus       139 P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g--~~i------------~~~~~~~~~---~~~sL~I~~v~~~  201 (940)
                      +.+...|....+.+|++++|.|.+.+.|.+.+.|++.+  ...            ....++...   .+.+|.|.+++.+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            34555677789999999999999999988999999832  111            112344333   2447999999999


Q ss_pred             CCceEEEEEEcCCcc-eeeeeeeeec--CCCCeeeeCCCeeEEecCCeEEEEEEEeee-C-CCeEEEEECCeecCCCC--
Q psy11143        202 DSGLYRCTASNLLGE-DVAEGYLTVT--GAPPIFIQRPVSTTYSTGSTSRITCLVEGH-P-LPQMTWFHDGNSLDSDD--  274 (940)
Q Consensus       202 DsG~YtC~a~N~~g~-~s~s~~L~V~--~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P-~p~ItW~k~g~~l~~~~--  274 (940)
                      |+|.|+|.+.+..+. ......+.|.  ..+|.+...+....+..|+.++|.|.+.+. | .+.|+|+++|..+....  
T Consensus       105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~  184 (237)
T 3sob_L          105 DFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE  184 (237)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred             hCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee
Confidence            999999999887653 2223345553  245555554554455578999999999984 4 57999999999887531  


Q ss_pred             --ceEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEE
Q psy11143        275 --HVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAM  314 (940)
Q Consensus       275 --~~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~  314 (940)
                        ......++     ..|.|.....+|+|.|+|.|.|..........
T Consensus       185 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  231 (237)
T 3sob_L          185 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKS  231 (237)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEE
T ss_pred             cccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeee
Confidence              00111111     24889999999999999999999876544433

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.67  E-value=7.6e-16  Score=167.28  Aligned_cols=178  Identities=19%  Similarity=0.321  Sum_probs=127.1

Q ss_pred             eCCCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eecC-----------------CCCceEEeec----CeEEEEe
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSLD-----------------SDDHVTYEHD----GFVLVLN  288 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l~-----------------~~~~~~~~~~----g~sL~I~  288 (940)
                      ..|....+.+|++++|.|.+.+.|  .+.+.|+|++  ..+.                 ...++.+..+    ..+|.|.
T Consensus        31 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  110 (282)
T 1qok_A           31 QQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS  110 (282)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence            345677889999999999998875  6799999963  1110                 1235555432    2469999


Q ss_pred             eeccCCCeEEEEEEEeCCCC---c--eeEEEEEEeec-------------cCCeEEEcCCceeecCCCeEEEEEeecCcC
Q psy11143        289 GVRESDAGVYNCVAQNSEGS---A--ESVAMIRINGH-------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEP  350 (940)
Q Consensus       289 ~v~~~DsG~YtC~A~N~~Gs---~--~~s~~l~V~~~-------------~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P  350 (940)
                      +++.+|+|.|+|.+.|..|.   .  ...+.|.|...             .+|.+...|....+.+|++++|.|.+.+.|
T Consensus       111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  190 (282)
T 1qok_A          111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV  190 (282)
T ss_dssp             SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC
T ss_pred             cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC
Confidence            99999999999999998762   1  12345666542             234566667778899999999999999999


Q ss_pred             CCeEEEEe--CCeeec------------cCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeE-EEEEEEEEecC
Q psy11143        351 LPRISWSK--DEAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVTGE  412 (940)
Q Consensus       351 ~p~i~W~k--~g~~i~------------~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V~~~  412 (940)
                       +.+.|+|  ++..+.            ...++.+..   ..+|+|.++..+|+|.|+|.|.|..+.. ...+.|.|.+.
T Consensus       191 -~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  269 (282)
T 1qok_A          191 -SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKRA  269 (282)
T ss_dssp             -SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             -ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEecc
Confidence             9999999  554331            134555432   3479999999999999999999864322 23456777654

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.67  E-value=1.5e-15  Score=162.14  Aligned_cols=168  Identities=18%  Similarity=0.292  Sum_probs=117.9

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--E---ee-------------cCCCCeEEEee----ceEEE
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--N---SL-------------DSDDHVTYEHD----GFVLV  102 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~---~I-------------~~~~~~~~~~~----gs~L~  102 (940)
                      ..+.+|..+.+.+|++|+|.|.+.+.  +.+.|.|+|..  .   .+             ....++.+..+    ...|.
T Consensus        10 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   89 (257)
T 3gkz_A           10 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQ   89 (257)
T ss_dssp             EEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             EEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEE
Confidence            34455667789999999999999884  47799999832  1   11             01234444422    23589


Q ss_pred             EcccccCCCeEEEEEEEeCCCc--e--EEEEEEEEecc------------cCCeeEecCCceeecCCCcEEEEEEeCCCC
Q psy11143        103 LNGVRESDAGVYNCVAQNSEGS--A--ESVAMIRINGH------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEP  166 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g~--~--~~~~~L~V~~~------------~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P  166 (940)
                      |.+++.+|+|.|+|.+.|..+.  .  ...+.|.|...            +.+.+...+....+.+|++++|.|.+.+.+
T Consensus        90 I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  169 (257)
T 3gkz_A           90 LKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSV  169 (257)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCC
T ss_pred             ECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCc
Confidence            9999999999999999987322  1  12456777654            235666677778999999999999999988


Q ss_pred             CC-eEEEeeC--Ceeccc------------cCceEEee---eceEEEeecccCCCceEEEEEEcCC
Q psy11143        167 LP-RISWSKD--EAEFVE------------DRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       167 ~p-~ItW~k~--g~~i~~------------~~~~~~~~---~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      .+ .+.|++.  +..+..            ..++....   ..+|.|.+++.+|+|.|+|.+.+..
T Consensus       170 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          170 SSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             CGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             cceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            77 9999983  322210            12333222   2359999999999999999998753

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.67  E-value=1.1e-15  Score=162.98  Aligned_cols=180  Identities=17%  Similarity=0.265  Sum_probs=125.1

Q ss_pred             eeCCCeeEEecCCeEEEEEEEeee--CCCeEEEEECC--ee---c-------------CCCCceEEeecC----eEEEEe
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NS---L-------------DSDDHVTYEHDG----FVLVLN  288 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~--P~p~ItW~k~g--~~---l-------------~~~~~~~~~~~g----~sL~I~  288 (940)
                      ...+....+.+|++++|.|.+.+.  +.+.+.|+|..  ..   +             ....++.+..++    .+|.|.
T Consensus        12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   91 (257)
T 3gkz_A           12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK   91 (257)
T ss_dssp             EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence            334556678999999999999984  47899999832  11   1             112345544322    259999


Q ss_pred             eeccCCCeEEEEEEEeCCCC----ceeEEEEEEeec------------cCCeEEEcCCceeecCCCeEEEEEeecCcCCC
Q psy11143        289 GVRESDAGVYNCVAQNSEGS----AESVAMIRINGH------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP  352 (940)
Q Consensus       289 ~v~~~DsG~YtC~A~N~~Gs----~~~s~~l~V~~~------------~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p  352 (940)
                      +++.+|+|.|+|.|.|..+.    ......|.|...            .+|.+...+....+.+|++|+|.|.+.+.|.+
T Consensus        92 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  171 (257)
T 3gkz_A           92 SVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS  171 (257)
T ss_dssp             SCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred             CCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence            99999999999999997322    123345666543            24667777777889999999999999999888


Q ss_pred             -eEEEEeC--Ceeec------------cCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEEEEecC
Q psy11143        353 -RISWSKD--EAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGE  412 (940)
Q Consensus       353 -~i~W~k~--g~~i~------------~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~~  412 (940)
                       .+.|+|.  +....            ...++.+..   ..+|.|.+++.+|+|.|+|.|.|.....-. ...|.|...
T Consensus       172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~  250 (257)
T 3gkz_A          172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRA  250 (257)
T ss_dssp             GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred             eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeC
Confidence             9999983  22111            023444433   236999999999999999999985443222 335666654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=162.95  Aligned_cols=172  Identities=15%  Similarity=0.293  Sum_probs=124.8

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEee--eCCCeEEEEECC--eec-----------------CCCCceEEeec----C
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDG--NSL-----------------DSDDHVTYEHD----G  282 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G--~P~p~ItW~k~g--~~l-----------------~~~~~~~~~~~----g  282 (940)
                      .++.+...+....+.+|++++|.|.+.+  .+.+.+.|+|..  ..+                 ....++.+..+    .
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            3455667788889999999999999988  367799999742  111                 01235555422    2


Q ss_pred             eEEEEeeeccCCCeEEEEEEEeC------------CCCceeEEEEEEeecc-------------CCeEEEcCCceeecCC
Q psy11143        283 FVLVLNGVRESDAGVYNCVAQNS------------EGSAESVAMIRINGHR-------------APRLVVKPFDMRAPAG  337 (940)
Q Consensus       283 ~sL~I~~v~~~DsG~YtC~A~N~------------~Gs~~~s~~l~V~~~~-------------~P~i~~~p~~~~v~~G  337 (940)
                      .+|.|.+++.+|+|.|.|.+.|.            .+.......|.|....             +|.+...|....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            35999999999999999999987            2223334556665421             4567777888899999


Q ss_pred             CeEEEEEeecCcCC-CeEEEEeC--Ceeec------------cCCcEEEeee---ceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        338 SSVEIPCKPDGEPL-PRISWSKD--EAEFV------------EDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       338 ~~vtL~C~v~g~P~-p~i~W~k~--g~~i~------------~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      ++|+|.|.+.+.|. +.+.|+|.  +....            ...++.+...   .+|.|.+++.+|+|.|+|.|.|..+
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999999887 89999983  22111            2245554433   3599999999999999999999654

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.67  E-value=6.6e-16  Score=164.55  Aligned_cols=180  Identities=15%  Similarity=0.234  Sum_probs=125.5

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEee-----------------cCCCCeEEEee----ceEEE
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSL-----------------DSDDHVTYEHD----GFVLV  102 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~I-----------------~~~~~~~~~~~----gs~L~  102 (940)
                      +..+|..+.+.+|++|+|.|.+.+.+  .+.|.|+|.  +..+                 ....++.+..+    ...|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            34567788899999999999998854  679999982  2111                 01134444422    23489


Q ss_pred             EcccccCCCeEEEEEEEeCCCceE-EEEEEEEecc-------------cCCeeEecCCceeecCCCcEEEEEEeCCCCCC
Q psy11143        103 LNGVRESDAGVYNCVAQNSEGSAE-SVAMIRINGH-------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP  168 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g~~~-~~~~L~V~~~-------------~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p  168 (940)
                      |.+++.+|+|.|+|.+.|..+... ..+.|.|...             ..+.+...+....+.+|++++|.|.+.+.+.+
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence            999999999999999998665543 2556666642             24567777778899999999999999998876


Q ss_pred             ----eEEEeeC--Ceecc------------ccCceEEee---eceEEEeecccCCCceEEEEEEcCCcce-eeeeeeeec
Q psy11143        169 ----RISWSKD--EAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVT  226 (940)
Q Consensus       169 ----~ItW~k~--g~~i~------------~~~~~~~~~---~~sL~I~~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~  226 (940)
                          .+.|+++  +..+.            ...++....   ..+|.|.+++.+|+|.|+|.+.|..+.. ..-+.|.|.
T Consensus       164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~  243 (253)
T 3uzq_A          164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK  243 (253)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence                8999984  22211            012333222   2359999999999999999999865432 233455565


Q ss_pred             C
Q psy11143        227 G  227 (940)
Q Consensus       227 ~  227 (940)
                      .
T Consensus       244 ~  244 (253)
T 3uzq_A          244 R  244 (253)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.67  E-value=3.2e-16  Score=160.37  Aligned_cols=164  Identities=16%  Similarity=0.323  Sum_probs=115.9

Q ss_pred             ceeecCCCcEEEEEEeCC----CCCCeEEEeeCCeeccc------------cCceEE--eeeceEEEeecccCCCceEEE
Q psy11143        147 DMRAPAGSSVEIPCKPDG----EPLPRISWSKDEAEFVE------------DRNHKI--HRTGSLRLYNIGPQDSGLYRC  208 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~v~g----~P~p~ItW~k~g~~i~~------------~~~~~~--~~~~sL~I~~v~~~DsG~YtC  208 (940)
                      .+.+.+|++++|.|.+.+    .|.+.+.|++++..+..            ..+..+  ..+.+|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            457889999999999863    46679999998876621            112222  124579999999999999999


Q ss_pred             EEEcCCcce-----eeeeeeeecCCC--CeeeeCCCeeEEecCCeEEEEEEEe-eeCCCeEEEEECCeecCCCCceEEe-
Q psy11143        209 TASNLLGED-----VAEGYLTVTGAP--PIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYE-  279 (940)
Q Consensus       209 ~a~N~~g~~-----s~s~~L~V~~~~--p~~~~~p~~~~v~~G~~v~L~C~v~-G~P~p~ItW~k~g~~l~~~~~~~~~-  279 (940)
                      .+.|..|..     ...+.|.|...+  |.+..    .....|+.+.|.|.+. |+|.|.|+|+++|..+......... 
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~----~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  158 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISD----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD  158 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE----EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEe----ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence            999977653     345666666432  22221    1124588999999995 9999999999999988754332222 


Q ss_pred             ecCeEE---EEeeeccCCCeEEEEEEEeCCCCceeEEE
Q psy11143        280 HDGFVL---VLNGVRESDAGVYNCVAQNSEGSAESVAM  314 (940)
Q Consensus       280 ~~g~sL---~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~  314 (940)
                      .++..+   .+..+...|.|.|+|.|.|..|..+..+.
T Consensus       159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            222212   33456678999999999999998766543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.66  E-value=1.4e-15  Score=162.23  Aligned_cols=178  Identities=17%  Similarity=0.271  Sum_probs=123.0

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Ee---e--------------cCCCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---L--------------DSDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~---I--------------~~~~~~~~~~~----gs~L~I~~  105 (940)
                      ++..+.+.+|++|+|.|.+.+.+  .+.|.|||..  ..   +              ....++.+..+    ...|.|.+
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS   87 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence            34556799999999999998866  6799999832  11   1              01234444422    23489999


Q ss_pred             cccCCCeEEEEEEEeCC----CceEEEEEEEEecc--------------cCCeeEecCCceeecCCCcEEEEEEeCCCCC
Q psy11143        106 VRESDAGVYNCVAQNSE----GSAESVAMIRINGH--------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL  167 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~----g~~~~~~~L~V~~~--------------~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~  167 (940)
                      ++.+|+|.|+|.+.+..    +.....+.|.|...              ..|.+...+....+.+|++++|.|.+.+.|.
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  167 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG  167 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence            99999999999999872    22223456777642              2456777777889999999999999999888


Q ss_pred             CeEEEeeC--Ceecc------------ccCceEEeee---ceEEEeecccCCCceEEEEEEcCCcce-eeeeeeeecCC
Q psy11143        168 PRISWSKD--EAEFV------------EDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVTGA  228 (940)
Q Consensus       168 p~ItW~k~--g~~i~------------~~~~~~~~~~---~sL~I~~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~~  228 (940)
                      +.+.|++.  +..+.            ...++.....   .+|.|.+++.+|+|.|+|.+.+..... ...+.|.|...
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            89999984  22221            1133333222   359999999999999999999854332 23455666643

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.66  E-value=7.9e-16  Score=159.43  Aligned_cols=167  Identities=19%  Similarity=0.246  Sum_probs=115.9

Q ss_pred             CCceeecCCCcEEEEEEeC-CCC-CCeEEEeeCC--eecc------------ccCceEEeee---ceEEEeecccCCCce
Q psy11143        145 PFDMRAPAGSSVEIPCKPD-GEP-LPRISWSKDE--AEFV------------EDRNHKIHRT---GSLRLYNIGPQDSGL  205 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~-g~P-~p~ItW~k~g--~~i~------------~~~~~~~~~~---~sL~I~~v~~~DsG~  205 (940)
                      |....+.+|++++|.|.+. +.+ .+.+.|++++  ..+.            ...++.....   .+|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            6678899999999999954 443 5799999943  2210            1234444322   379999999999999


Q ss_pred             EEEEEEcCCc--ceeeeeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEee-eCCC-eEEEEECCeecCCCCce--E
Q psy11143        206 YRCTASNLLG--EDVAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHV--T  277 (940)
Q Consensus       206 YtC~a~N~~g--~~s~s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G-~P~p-~ItW~k~g~~l~~~~~~--~  277 (940)
                      |+|.+.|..+  .......|.|..  .+|.+...+.......|+.++|.|.+.| .|.+ .|+|+|+|..+......  .
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  166 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT  166 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence            9999999876  222334566643  3455554333333346899999999998 4554 89999999988654111  1


Q ss_pred             --EeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCcee
Q psy11143        278 --YEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAES  311 (940)
Q Consensus       278 --~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~  311 (940)
                        ...++     ..|.|..+..+|+|.|+|.|.|.......
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (216)
T 2xzc_L          167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  207 (216)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCce
Confidence              11122     25899999999999999999998766543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.66  E-value=6.3e-17  Score=169.67  Aligned_cols=172  Identities=16%  Similarity=0.290  Sum_probs=102.1

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCE--ee---c---------CCCCeEEE--eeceEEEEccccc
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SL---D---------SDDHVTYE--HDGFVLVLNGVRE  108 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~--~I---~---------~~~~~~~~--~~gs~L~I~~v~~  108 (940)
                      .+.+...|..+.+.+|++++|.|.+.+.|.+.|.|+|++.  .+   .         ...++...  .....|.|.+++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            4555666888899999999999999988878899998532  11   0         01122222  2233689999999


Q ss_pred             CCCeEEEEEEEeCCCceEE-EEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCCeecccc--
Q psy11143        109 SDAGVYNCVAQNSEGSAES-VAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVED--  182 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g~~i~~~--  182 (940)
                      +|+|.|+|.+.|..+.... ...|.|.... +|.+...+....+.+|++++|.|.+.+. |.+ .++|+++|..+...  
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~  182 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  182 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence            9999999999987653322 2345555432 4666665544445579999999999984 444 79999998876543  


Q ss_pred             --------CceEEeeeceEEEeecccCCCceEEEEEEcCCcc
Q psy11143        183 --------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       183 --------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                              ........+.|.|..+..+|+|.|+|.|.|....
T Consensus       183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          183 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence                    1111223346899999999999999999996544

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.66  E-value=1.6e-14  Score=178.12  Aligned_cols=336  Identities=15%  Similarity=0.183  Sum_probs=209.7

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCC-CeEEEEEEEeCCCceEEEEEEEEecc--
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD-AGVYNCVAQNSEGSAESVAMIRINGH--  136 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~D-sG~YtC~a~n~~g~~~~~~~L~V~~~--  136 (940)
                      +..+.|.|.+.|.|.|.+.|.|+|..+.....       ..+.|..+...+ .+.|+|.+.+..|..... .+.+...  
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~-------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~~~~  162 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR-------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLGHPC  162 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCEE-------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEESSCC
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCceeE-------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeeeccc
Confidence            45899999999999999999999987643211       123555442333 478888777777765442 2223221  


Q ss_pred             -cCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEE-Ee--eCCeeccccCceEE---eeeceEEEeecccCCCceEEEE
Q psy11143        137 -RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS-WS--KDEAEFVEDRNHKI---HRTGSLRLYNIGPQDSGLYRCT  209 (940)
Q Consensus       137 -~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~It-W~--k~g~~i~~~~~~~~---~~~~sL~I~~v~~~DsG~YtC~  209 (940)
                       .+|.+. .+.+..+.+|++++|.|.+.|.|.|.+. |+  +++..+.......+   ...++|.|.++...|.|.|+|.
T Consensus       163 ~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~  241 (731)
T 2v5y_A          163 TRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM  241 (731)
T ss_dssp             SSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEE
T ss_pred             ccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEE
Confidence             335555 6678899999999999999999999988 77  57766643321111   1236899999999999999999


Q ss_pred             EEcCCcc-eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeee----CCC--eEEEEECCeecCCCCceEEeecC
Q psy11143        210 ASNLLGE-DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH----PLP--QMTWFHDGNSLDSDDHVTYEHDG  282 (940)
Q Consensus       210 a~N~~g~-~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~----P~p--~ItW~k~g~~l~~~~~~~~~~~g  282 (940)
                      |.|..|. .+..+.|.|. .+|.....+... ......+.|.|.....    |..  .|.|...+...    ........
T Consensus       242 A~n~~G~~~s~~~~l~V~-~~P~~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~----~~~~~~~~  315 (731)
T 2v5y_A          242 IRTEGGVGISNYAELVVK-EPPVPIAPPQLA-SVGATYLWIQLNANSINGDGPIVAREVEYCTASGSW----NDRQPVDS  315 (731)
T ss_dssp             EEETTEEEECCCEEEEEE-CCCCBSSCCEEE-EECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSC----EEEEECCS
T ss_pred             EECCCCCcceeeEEEEEe-cCCCCCCCccee-ccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCc----eEEeccCc
Confidence            9999998 6777778887 444433333332 3345678898876432    222  56676543211    11112234


Q ss_pred             eEEEEeeeccCCCeEEEEEEE--eCCCCceeEEEEEEee--ccCCeEEEcCCce--eecCCCeEEEEEeecCc-----CC
Q psy11143        283 FVLVLNGVRESDAGVYNCVAQ--NSEGSAESVAMIRING--HRAPRLVVKPFDM--RAPAGSSVEIPCKPDGE-----PL  351 (940)
Q Consensus       283 ~sL~I~~v~~~DsG~YtC~A~--N~~Gs~~~s~~l~V~~--~~~P~i~~~p~~~--~v~~G~~vtL~C~v~g~-----P~  351 (940)
                      ..+.|.++...+...|+|.|.  |..|....+..+.+..  ..||.   .|.++  .......+.|.+.....     +.
T Consensus       316 ~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~---~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~  392 (731)
T 2v5y_A          316 TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMR---GPRKLEVVEVKSRQITIRWEPFGYNVTRCHS  392 (731)
T ss_dssp             SEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSC---CCEEEEEEEECSSCEEEEEECCCHHHHCSSS
T ss_pred             ceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCC---CCceeEEEeccCCeEEEEEECCCccccccee
Confidence            569999999999899999999  9998876443333322  11111   11121  22344567787775321     11


Q ss_pred             C--eEEEEeCCeeeccCCcE-EE---eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        352 P--RISWSKDEAEFVEDRNH-KI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       352 p--~i~W~k~g~~i~~~~~~-~i---~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      -  .|.|...+......... .+   .....+.|.++.......|++.|.|..|... +..+.+.....
T Consensus       393 ~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~  460 (731)
T 2v5y_A          393 YNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDED  460 (731)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCC
T ss_pred             eeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCC
Confidence            1  34454322100000000 00   1123688899988888889999999999864 55666665443

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.66  E-value=1.2e-15  Score=161.71  Aligned_cols=171  Identities=16%  Similarity=0.267  Sum_probs=120.1

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC--eec------------CCCCceEEeec--CeEEEEeeeccCCC
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL------------DSDDHVTYEHD--GFVLVLNGVRESDA  295 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g--~~l------------~~~~~~~~~~~--g~sL~I~~v~~~Ds  295 (940)
                      +...|....+.+|++++|.|.+.+.|.+.+.|+|+.  ..+            ....++.+...  ..+|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            445577788999999999999999999999999953  111            01335554432  23699999999999


Q ss_pred             eEEEEEEEeCCCCc-eeEEEEEEeecc-----------CCeEEEcCCceeecCCCeEEEEEeecCcC--CCeEEEEeC--
Q psy11143        296 GVYNCVAQNSEGSA-ESVAMIRINGHR-----------APRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKD--  359 (940)
Q Consensus       296 G~YtC~A~N~~Gs~-~~s~~l~V~~~~-----------~P~i~~~p~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~--  359 (940)
                      |.|+|.+.|..+.. .....|.|....           ++..+..+....+.+|++++|.|.+.+.|  .+.+.|+|+  
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~  163 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFP  163 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCC
Confidence            99999999985432 123456665321           12233444445689999999999999886  479999984  


Q ss_pred             Ceeec----------------cCCcEEEee-----eceEEEecCCCCCCeEEEEEEEeC--CeeEE
Q psy11143        360 EAEFV----------------EDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNL--LGEDV  402 (940)
Q Consensus       360 g~~i~----------------~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A~N~--~G~~~  402 (940)
                      +..+.                ...++.+..     ..+|.|.+++.+|+|.|+|.|.|.  +|..+
T Consensus       164 ~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~fG~gt  229 (242)
T 2znx_A          164 GNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDGDYXGQGT  229 (242)
T ss_dssp             TSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTSSCBCCCE
T ss_pred             CCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCCcccCCCe
Confidence            22210                134565543     238999999999999999999983  44433

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.66  E-value=3.3e-16  Score=161.72  Aligned_cols=167  Identities=17%  Similarity=0.281  Sum_probs=119.5

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEEC--CeecC----------------CCCceEEeec----CeEEEEeeec
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLD----------------SDDHVTYEHD----GFVLVLNGVR  291 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~--g~~l~----------------~~~~~~~~~~----g~sL~I~~v~  291 (940)
                      |....+.+|++++|.|.+.+.|  .+.+.|+|+  +..+.                ...++.+..+    ..+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            4556788999999999999875  479999985  22210                1345555432    1369999999


Q ss_pred             cCCCeEEEEEEEeCCCCceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeecc--
Q psy11143        292 ESDAGVYNCVAQNSEGSAESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVE--  365 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~--  365 (940)
                      .+|+|.|+|.+.|.. .......+.|..  ..+|.+...+....+..|+.++|.|.+.|. |.| .|.|++++..+..  
T Consensus        87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             GGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             cccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE
Confidence            999999999999864 222234566653  245766655544567889999999999987 888 9999999875321  


Q ss_pred             CCcE----EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143        366 DRNH----KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       366 ~~~~----~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s  404 (940)
                      ....    .....+.|.|..+..+| |.|+|.|.|..|.....
T Consensus       166 ~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          166 FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            1111    11234579999988877 99999999999976544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.66  E-value=2.4e-15  Score=160.50  Aligned_cols=172  Identities=15%  Similarity=0.288  Sum_probs=122.7

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--Ee---e--------------cCCCCeEEEee----c
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NS---L--------------DSDDHVTYEHD----G   98 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~~---I--------------~~~~~~~~~~~----g   98 (940)
                      .++.+...+..+++.+|++|+|.|.+.+.  +.+.|.|+|..  ..   +              ....++.+..+    .
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            35677788889999999999999999883  66799999732  11   0              01124444422    2


Q ss_pred             eEEEEcccccCCCeEEEEEEEeC------------CCceEEEEEEEEeccc-------------CCeeEecCCceeecCC
Q psy11143         99 FVLVLNGVRESDAGVYNCVAQNS------------EGSAESVAMIRINGHR-------------APRLVVKPFDMRAPAG  153 (940)
Q Consensus        99 s~L~I~~v~~~DsG~YtC~a~n~------------~g~~~~~~~L~V~~~~-------------~P~~~~~p~~~~v~~G  153 (940)
                      ..|.|.+++.+|+|.|.|.+.+.            .+.....+.|.|....             ++.+...+....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            35899999999999999999986            2222224566665531             3466777888899999


Q ss_pred             CcEEEEEEeCCCCC-CeEEEeeC--Ceecc------------ccCceEEee---eceEEEeecccCCCceEEEEEEcCCc
Q psy11143        154 SSVEIPCKPDGEPL-PRISWSKD--EAEFV------------EDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       154 e~vtL~C~v~g~P~-p~ItW~k~--g~~i~------------~~~~~~~~~---~~sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      ++++|.|.+.+.+. +.+.|++.  +..+.            ...++....   ..+|.|.+++.+|+|.|+|.+.|...
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999998776 89999982  22221            123333332   23599999999999999999988543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.66  E-value=9.8e-16  Score=162.32  Aligned_cols=167  Identities=16%  Similarity=0.252  Sum_probs=117.3

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--E---eec---------CCCCeEEEee--ceEEEEcccccCC
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--N---SLD---------SDDHVTYEHD--GFVLVLNGVRESD  110 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~---~I~---------~~~~~~~~~~--gs~L~I~~v~~~D  110 (940)
                      .+...|..+.+.+|++|+|.|.+.+.|.+.|.|+|+.  .   .+.         ...++.+...  ...|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            4566678889999999999999999888999999853  1   110         1234444322  3468999999999


Q ss_pred             CeEEEEEEEeCCCceE-EEEEEEEecccC-----------CeeEecCCceeecCCCcEEEEEEeCCCC--CCeEEEeeC-
Q psy11143        111 AGVYNCVAQNSEGSAE-SVAMIRINGHRA-----------PRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKD-  175 (940)
Q Consensus       111 sG~YtC~a~n~~g~~~-~~~~L~V~~~~~-----------P~~~~~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k~-  175 (940)
                      +|.|+|.+.|..+... ..+.|.|...+.           +.....+....+.+|++++|.|.+.+.|  .+.+.|+++ 
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  162 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF  162 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence            9999999998754322 234566654321           2233444456799999999999999876  478999984 


Q ss_pred             -Ceecc----------------ccCceEEee-----eceEEEeecccCCCceEEEEEEcC
Q psy11143        176 -EAEFV----------------EDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       176 -g~~i~----------------~~~~~~~~~-----~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                       +..+.                ...++.+..     ..+|.|.+++.+|+|.|+|.|.|.
T Consensus       163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence             22221                123344432     237999999999999999999873

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.66  E-value=6.6e-16  Score=159.41  Aligned_cols=168  Identities=17%  Similarity=0.294  Sum_probs=118.1

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEeec----------------CCCCeEEEee----ceEEEEccc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLD----------------SDDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~I~----------------~~~~~~~~~~----gs~L~I~~v  106 (940)
                      +|..+.+.+|++++|.|.+.+.|  .+.|.|+|+  +....                ...++.+..+    ...|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            35667899999999999999865  479999985  22210                1234554432    236899999


Q ss_pred             ccCCCeEEEEEEEeCCCceEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCCeecccc
Q psy11143        107 RESDAGVYNCVAQNSEGSAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVED  182 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g~~i~~~  182 (940)
                      +.+|+|.|+|.+.|.. .......|.|...  ..|.+...+....+.+|+.++|.|.+.+. |.| .++|++++..+...
T Consensus        86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~  164 (210)
T 3d9a_H           86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  164 (210)
T ss_dssp             CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence            9999999999998863 1112345666532  34566555544567899999999999986 888 99999988754211


Q ss_pred             --Cc----eEEeeeceEEEeecccCCCceEEEEEEcCCcceeee
Q psy11143        183 --RN----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  220 (940)
Q Consensus       183 --~~----~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s  220 (940)
                        ..    ......+.|.|.++..+| |.|+|.|.|..+.....
T Consensus       165 ~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          165 TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             ECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence              11    112234569999988867 99999999988876543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.66  E-value=9.9e-16  Score=163.72  Aligned_cols=170  Identities=19%  Similarity=0.334  Sum_probs=121.2

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Ee---e----------cCCCCeEEE----eeceEEEEccc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NS---L----------DSDDHVTYE----HDGFVLVLNGV  106 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~---I----------~~~~~~~~~----~~gs~L~I~~v  106 (940)
                      ..+...|..+.+.+|++|+|.|.+.+.|.+.|.|+|..  ..   +          ....++.+.    .....|.|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            34566678889999999999999999999999999832  11   1          112233332    22345899999


Q ss_pred             ccCCCeEEEEEEEeCCCceE----EEEEEEEec------------------ccCCeeEecCCceeecCCCcEEEEEEeCC
Q psy11143        107 RESDAGVYNCVAQNSEGSAE----SVAMIRING------------------HRAPRLVVKPFDMRAPAGSSVEIPCKPDG  164 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~g~~~----~~~~L~V~~------------------~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g  164 (940)
                      +.+|+|.|+|.+.+..+...    ..+.|.|..                  ...|.+...+....+.+|++++|.|.+.+
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence            99999999999998765321    135566664                  23466777788888899999999999987


Q ss_pred             CCCCeEEEeeCC--eecc---------------ccCceEEe----eeceEEEeecccCCCceEEEEEEcCCcc
Q psy11143        165 EPLPRISWSKDE--AEFV---------------EDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       165 ~P~p~ItW~k~g--~~i~---------------~~~~~~~~----~~~sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                      . .+.+.|++..  ..+.               ...++...    ...+|.|.+++.+|+|.|+|.|.|..|.
T Consensus       164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            6 6799999832  1110               01122221    1236999999999999999999987665

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=1.8e-15  Score=164.24  Aligned_cols=178  Identities=19%  Similarity=0.304  Sum_probs=125.3

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Eeec-----------------CCCCeEEEee----ceEEE
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSLD-----------------SDDHVTYEHD----GFVLV  102 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~I~-----------------~~~~~~~~~~----gs~L~  102 (940)
                      +...|..+.+.+|++|+|.|.+.+.|  .+.|.|+|++  ..+.                 ...++.+..+    ...|.
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            34567788999999999999998875  5799999964  1110                 1234444431    25689


Q ss_pred             EcccccCCCeEEEEEEEeCCC---ceE--EEEEEEEeccc-------------CCeeEecCCceeecCCCcEEEEEEeCC
Q psy11143        103 LNGVRESDAGVYNCVAQNSEG---SAE--SVAMIRINGHR-------------APRLVVKPFDMRAPAGSSVEIPCKPDG  164 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g---~~~--~~~~L~V~~~~-------------~P~~~~~p~~~~v~~Ge~vtL~C~v~g  164 (940)
                      |.+++.+|+|.|+|.+.|..|   ...  ..+.|.|...+             .+.+...+....+.+|++++|.|.+.+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  188 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS  188 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence            999999999999999999876   111  23467776542             344556677788999999999999999


Q ss_pred             CCCCeEEEee--CCeecc------------ccCceEEe---eeceEEEeecccCCCceEEEEEEcCCcc-eeeeeeeeec
Q psy11143        165 EPLPRISWSK--DEAEFV------------EDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASNLLGE-DVAEGYLTVT  226 (940)
Q Consensus       165 ~P~p~ItW~k--~g~~i~------------~~~~~~~~---~~~sL~I~~v~~~DsG~YtC~a~N~~g~-~s~s~~L~V~  226 (940)
                      .| +.+.|+|  ++..+.            ...++...   ...+|.|.+++.+|+|.|+|.+.+.... -...+.|.|.
T Consensus       189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence            88 8999999  555431            12334332   2346999999999999999999875332 2233455555

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.65  E-value=9.6e-16  Score=164.93  Aligned_cols=197  Identities=19%  Similarity=0.269  Sum_probs=114.5

Q ss_pred             cccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeC--Ceecc---
Q psy11143        106 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFV---  180 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~--g~~i~---  180 (940)
                      ....|.+.|.|.+.+..|.......        ..+...+..+.+.+|++++|.|.+.+ +.+.+.|+|.  +....   
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~--------~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~   73 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGG--------MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLI   73 (270)
T ss_dssp             ---------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccc--------eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEE
Confidence            3578999999999988775544332        23445566788999999999999876 6789999982  21110   


Q ss_pred             ---------cc---C-ceEEee----eceEEEeecccCCCceEEEEEEcCCc----ceeeeeeeeecCC-----CCeee-
Q psy11143        181 ---------ED---R-NHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLG----EDVAEGYLTVTGA-----PPIFI-  233 (940)
Q Consensus       181 ---------~~---~-~~~~~~----~~sL~I~~v~~~DsG~YtC~a~N~~g----~~s~s~~L~V~~~-----~p~~~-  233 (940)
                               ..   . ++....    +.+|.|.+++.+|+|.|+|.+.+...    .......|.|...     +|.+. 
T Consensus        74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~  153 (270)
T 3qib_D           74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV  153 (270)
T ss_dssp             EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred             EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence                     00   0 333322    34799999999999999999986422    2223345666531     34333 


Q ss_pred             eCCCeeEEecCCeEEEEEEEee-eCCC-eEEEEECCeecCCCCceEE--------eecC-----eEEEEeeeccCC-CeE
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY--------EHDG-----FVLVLNGVRESD-AGV  297 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G-~P~p-~ItW~k~g~~l~~~~~~~~--------~~~g-----~sL~I~~v~~~D-sG~  297 (940)
                      ..+....+..|+.++|.|.+.| .|.+ .++|+++|..+........        ..++     ..|.|.....+| .|.
T Consensus       154 ~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~  233 (270)
T 3qib_D          154 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNH  233 (270)
T ss_dssp             EECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCE
T ss_pred             ECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCe
Confidence            2333344556999999999998 6767 8999999998865322110        0111     236777777777 999


Q ss_pred             EEEEEEeCCCCcee
Q psy11143        298 YNCVAQNSEGSAES  311 (940)
Q Consensus       298 YtC~A~N~~Gs~~~  311 (940)
                      |+|.|.|.......
T Consensus       234 YtC~v~~~~l~~~~  247 (270)
T 3qib_D          234 FRCQVQFYGLSEND  247 (270)
T ss_dssp             EEEEEEECCBCTTS
T ss_pred             EEEEEEecCCCCcc
Confidence            99999998665543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.65  E-value=5.2e-16  Score=160.48  Aligned_cols=166  Identities=16%  Similarity=0.232  Sum_probs=115.4

Q ss_pred             eeCCCeeE-EecCCeEEEEEEEeeeC---C-CeEEEEECCeecCCCCc--------eEEeecCeEEEEeeeccCCCeEEE
Q psy11143        233 IQRPVSTT-YSTGSTSRITCLVEGHP---L-PQMTWFHDGNSLDSDDH--------VTYEHDGFVLVLNGVRESDAGVYN  299 (940)
Q Consensus       233 ~~~p~~~~-v~~G~~v~L~C~v~G~P---~-p~ItW~k~g~~l~~~~~--------~~~~~~g~sL~I~~v~~~DsG~Yt  299 (940)
                      ...|.... +.+|++++|.|.+.|.|   . +.|.|+|++..+.....        ..+.. ...|.|.+++.+|+|.|+
T Consensus         6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~   84 (207)
T 2vol_A            6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRS-VSELPIMHQDWLNGKEFK   84 (207)
T ss_dssp             EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEE-EEEEECCHHHHHTTCCEE
T ss_pred             EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEE-EEEEEEehhHcCCCCEEE
Confidence            33444444 78999999999999985   2 49999999987653210        01111 134999999999999999


Q ss_pred             EEEEeCCCCceeEEEEEE--eeccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeeccCC--cEEEee
Q psy11143        300 CVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDR--NHKIHR  373 (940)
Q Consensus       300 C~A~N~~Gs~~~s~~l~V--~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~~--~~~i~~  373 (940)
                      |.|.|..+.......+.+  ....+|.+...+.......|+.++|.|.+.|. |.+ .|+|+|+|..+....  ......
T Consensus        85 C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  164 (207)
T 2vol_A           85 CRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDT  164 (207)
T ss_dssp             EEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECT
T ss_pred             EEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECC
Confidence            999999886533333332  44568887766554334469999999999985 553 999999998774321  111222


Q ss_pred             ec------eEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        374 TG------SLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       374 ~~------sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      ++      .|.|.....+|.|.|+|.|.|...
T Consensus       165 ~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          165 DGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             TSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             CCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            23      356666666789999999999754

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.65  E-value=5.9e-16  Score=155.60  Aligned_cols=152  Identities=10%  Similarity=0.120  Sum_probs=111.4

Q ss_pred             eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCC------------CCceEEeecCeEEEEeeeccCCCeEEEEEEEeC
Q psy11143        238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS------------DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  305 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~------------~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~  305 (940)
                      ...+..|++|+|.|.+.+ |.+.|.|+|++..+..            ..+..+...+.+|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            456789999999999854 8889999998864421            123344323345999999999999999999998


Q ss_pred             CCCceeEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCC
Q psy11143        306 EGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP  384 (940)
Q Consensus       306 ~Gs~~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~  384 (940)
                      .|  ...+.|.|... ..|.+.....        ..+|.|.+.+.|.|.|+|++++..+.....      ..|.+.  ..
T Consensus        83 ~~--~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~------~~l~~~--~~  144 (171)
T 1ccz_A           83 TD--TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLRSLRQ------KTMSYQ--WT  144 (171)
T ss_dssp             CS--CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEEEESS------SEEEEE--CS
T ss_pred             CC--cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECcCCcc------eEEEEe--cc
Confidence            87  56667777643 2344443222        137999999999999999999988753322      233343  36


Q ss_pred             CCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        385 QDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       385 ~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      .|.|.|+|.|.|..|..+..+.|.
T Consensus       145 ~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          145 NLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             CCSSCEEEEEEETTEEEEEEECCC
T ss_pred             CCCceEEEEEEcccCcccceeEEe
Confidence            789999999999999988776553

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.65  E-value=7.4e-16  Score=161.80  Aligned_cols=179  Identities=15%  Similarity=0.231  Sum_probs=120.8

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eec------C-----------CCCceEEeec----CeEEEEee
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL------D-----------SDDHVTYEHD----GFVLVLNG  289 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l------~-----------~~~~~~~~~~----g~sL~I~~  289 (940)
                      .+....+.+|++++|.|.+.+.+  .+.|.|+|+.  ..+      .           ...++.+..+    ..+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            35567889999999999999876  6799999863  211      0           1245555432    34699999


Q ss_pred             eccCCCeEEEEEEEeCCCCc-eeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeec
Q psy11143        290 VRESDAGVYNCVAQNSEGSA-ESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFV  364 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~Gs~-~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~  364 (940)
                      ++.+|+|.|.|.+.|..+.. .....|.|..  ..+|.+...+....+..|+.++|.|.+.|. |.| .|.|++++..+.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  165 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG  165 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence            99999999999999863211 1234666653  235666544333456789999999999986 877 999999987542


Q ss_pred             c--CCcE----EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        365 E--DRNH----KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       365 ~--~~~~----~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .  ....    .....+.|.|..+..+| |.|+|.|.|..+.......+.+.++|.
T Consensus       166 ~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~  220 (227)
T 1mju_H          166 VHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI  220 (227)
T ss_dssp             EEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred             cEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCC
Confidence            1  1111    11234579999998888 999999999888777777776666543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.65  E-value=5.5e-16  Score=166.80  Aligned_cols=195  Identities=17%  Similarity=0.241  Sum_probs=114.8

Q ss_pred             cccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC--Ceec-----
Q psy11143        198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL-----  270 (940)
Q Consensus       198 v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~--g~~l-----  270 (940)
                      .++.|.+.|.|.+.+..|.......+.|       ...+....+.+|++++|.|.+.+ +.+.|.|+|.  +...     
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v-------~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~   74 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKV-------IQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLIN   74 (270)
T ss_dssp             -------------------------CCC-------EEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccceeE-------EeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEE
Confidence            3578899999999988776554443333       34466778899999999999865 7789999982  2111     


Q ss_pred             -------CCC---C-ceEEee---cCeEEEEeeeccCCCeEEEEEEEeCCC----CceeEEEEEEee----ccCCeEEE-
Q psy11143        271 -------DSD---D-HVTYEH---DGFVLVLNGVRESDAGVYNCVAQNSEG----SAESVAMIRING----HRAPRLVV-  327 (940)
Q Consensus       271 -------~~~---~-~~~~~~---~g~sL~I~~v~~~DsG~YtC~A~N~~G----s~~~s~~l~V~~----~~~P~i~~-  327 (940)
                             ...   . ++.+..   ...+|.|.+++.+|+|.|+|.+.+...    .......+.|..    ..+|.+.. 
T Consensus        75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~  154 (270)
T 3qib_D           75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF  154 (270)
T ss_dssp             EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred             ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence                   000   0 333332   134699999999999999999997432    122234566643    12565543 


Q ss_pred             cCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCeeeccCCcE--------------EEeeeceEEEecCCCCC-CeEE
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDRNH--------------KIHRTGSLRLYNIGPQD-SGLY  390 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~~i~~~~~~--------------~i~~~~sL~I~~v~~~D-~G~Y  390 (940)
                      .+....+..|+.++|.|.+.| .|.| .|.|+|+|..+......              .....+.|.|.....+| .|.|
T Consensus       155 ~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~Y  234 (270)
T 3qib_D          155 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF  234 (270)
T ss_dssp             ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEE
T ss_pred             CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeE
Confidence            344445566999999999998 6767 89999999888543211              11123467888887777 9999


Q ss_pred             EEEEEeCCee
Q psy11143        391 RCTASNLLGE  400 (940)
Q Consensus       391 tC~A~N~~G~  400 (940)
                      +|.|.|....
T Consensus       235 tC~v~~~~l~  244 (270)
T 3qib_D          235 RCQVQFYGLS  244 (270)
T ss_dssp             EEEEEECCBC
T ss_pred             EEEEEecCCC
Confidence            9999997553

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.65  E-value=4e-16  Score=162.79  Aligned_cols=171  Identities=15%  Similarity=0.233  Sum_probs=116.4

Q ss_pred             CCeeeeCCCeeE--EecCCeEEEEEEEeee---CC-CeEEEEECCeecCCCCce--------EEeecCeEEEEeeeccCC
Q psy11143        229 PPIFIQRPVSTT--YSTGSTSRITCLVEGH---PL-PQMTWFHDGNSLDSDDHV--------TYEHDGFVLVLNGVRESD  294 (940)
Q Consensus       229 ~p~~~~~p~~~~--v~~G~~v~L~C~v~G~---P~-p~ItW~k~g~~l~~~~~~--------~~~~~g~sL~I~~v~~~D  294 (940)
                      +|.+...+....  +.+|++++|.|.+.|.   |. +.|+|+|++..+......        .+.. ...|.|.+++.+|
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D   87 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRV-VSTLPIQHQDWMS   87 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEE-EEEEECCHHHHHT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEE-EEEEEEcHHHcCC
Confidence            344443344433  7899999999999987   44 799999999877543211        1111 1349999999999


Q ss_pred             CeEEEEEEEeCCCCceeEEEEE--EeeccCCeEEEcCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCeeeccCC--c
Q psy11143        295 AGVYNCVAQNSEGSAESVAMIR--INGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDR--N  368 (940)
Q Consensus       295 sG~YtC~A~N~~Gs~~~s~~l~--V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~~i~~~~--~  368 (940)
                      +|.|+|.|.|..+.......+.  +....+|.+...+.......|+.++|.|.+.| .|.+ .|+|+|+|..+....  .
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  167 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTA  167 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecc
Confidence            9999999999977652222332  23456788776554433346999999999998 6776 999999998774321  1


Q ss_pred             EEEeeec------eEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        369 HKIHRTG------SLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       369 ~~i~~~~------sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      .....++      .|.|.....+|.|.|+|.|.|....
T Consensus       168 ~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          168 PVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             cEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            1112233      3455555555699999999997653

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.65  E-value=2.6e-15  Score=155.59  Aligned_cols=180  Identities=22%  Similarity=0.319  Sum_probs=132.5

Q ss_pred             CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCC--CceEEee--cCeEEEEeeeccCCCeEEEEEEE
Q psy11143        228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEH--DGFVLVLNGVRESDAGVYNCVAQ  303 (940)
Q Consensus       228 ~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~--~~~~~~~--~g~sL~I~~v~~~DsG~YtC~A~  303 (940)
                      .+|.+ ..+....+..|+.+.|.|.+.|.|.|.|.|+|+|..+...  .++.+..  ...+|.|.++..+|+|.|+|.|.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            34555 4667788999999999999999999999999999999765  3444443  24569999999999999999999


Q ss_pred             eCCCCceeEEEEEEeecc-CCeEEEcCCceeecCCCeEEEEEeec----CcCCC--eEEEEeCCeeeccCCcEEEee---
Q psy11143        304 NSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPD----GEPLP--RISWSKDEAEFVEDRNHKIHR---  373 (940)
Q Consensus       304 N~~Gs~~~s~~l~V~~~~-~P~i~~~p~~~~v~~G~~vtL~C~v~----g~P~p--~i~W~k~g~~i~~~~~~~i~~---  373 (940)
                      |..|.....+.+.|.... +|....     ....+..+.|.|...    +.|..  .+.|.+++..........+..   
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~  171 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM  171 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHH
T ss_pred             ECCCceEEEEEEEECCCCCCCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccc
Confidence            999999888877775422 222211     123467789999733    33444  478888775422111111111   


Q ss_pred             eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       374 ~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      ..+|.|.++...+.|.|+|.|.|..|....+..+.|+.++
T Consensus       172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            2689999999999999999999999988887777777654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.64  E-value=2.3e-15  Score=159.50  Aligned_cols=166  Identities=19%  Similarity=0.319  Sum_probs=117.9

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeC-----CCeEEEEECC--eec---C---------CCCceEEeecC--eEEEEeee
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDG--NSL---D---------SDDHVTYEHDG--FVLVLNGV  290 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P-----~p~ItW~k~g--~~l---~---------~~~~~~~~~~g--~sL~I~~v  290 (940)
                      +...|....+.+|++++|.|.+.+.|     .+.+.|+|+.  ..+   .         ...++.+...+  .+|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            34556778899999999999999887     6899999852  211   0         12345444322  35999999


Q ss_pred             ccCCCeEEEEEEEeCCCCc-eeEEEEEEeecc-----------CCeEEEcCCceeecCCCeEEEEEeecCcC--CCeEEE
Q psy11143        291 RESDAGVYNCVAQNSEGSA-ESVAMIRINGHR-----------APRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISW  356 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~Gs~-~~s~~l~V~~~~-----------~P~i~~~p~~~~v~~G~~vtL~C~v~g~P--~p~i~W  356 (940)
                      +.+|+|.|+|.+.|..+.. ...+.|.|....           ++.....+....+.+|++|+|.|.+.+.|  .+.+.|
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W  163 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHW  163 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred             CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEE
Confidence            9999999999999986542 223456665422           23334444455699999999999999885  569999


Q ss_pred             EeCC--eee------c-----------cCCcEEEee-----eceEEEecCCCCCCeEEEEEEEeC
Q psy11143        357 SKDE--AEF------V-----------EDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       357 ~k~g--~~i------~-----------~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      +|++  ...      .           ...++.+..     ..+|.|.+++.+|+|.|+|.|.|.
T Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          164 VKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            9963  211      0           134555543     248999999999999999999995

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.64  E-value=1.2e-15  Score=162.31  Aligned_cols=171  Identities=18%  Similarity=0.307  Sum_probs=120.4

Q ss_pred             CeeEecCCceeecCCCcEEEEEEeCCCC-----CCeEEEeeCC--eec------------cccCceEEeeec---eEEEe
Q psy11143        139 PRLVVKPFDMRAPAGSSVEIPCKPDGEP-----LPRISWSKDE--AEF------------VEDRNHKIHRTG---SLRLY  196 (940)
Q Consensus       139 P~~~~~p~~~~v~~Ge~vtL~C~v~g~P-----~p~ItW~k~g--~~i------------~~~~~~~~~~~~---sL~I~  196 (940)
                      +.+...|..+.+.+|++++|.|.+.+.|     .+.|.|++++  ..+            ....++.....+   +|.|.
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  114 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS  114 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence            3455557788899999999999999887     6899999954  111            012344443332   79999


Q ss_pred             ecccCCCceEEEEEEcCCcce-eeeeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecC
Q psy11143        197 NIGPQDSGLYRCTASNLLGED-VAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLD  271 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~  271 (940)
                      +++.+|+|.|+|.+.|..+.. .....|.|..  .+|.+...+....+..|+.++|.|.+.|. |.+ .|+|+|+|..+.
T Consensus       115 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~  194 (252)
T 3bkj_L          115 RVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  194 (252)
T ss_dssp             SCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecC
Confidence            999999999999999875532 2234566653  34555554443334579999999999985 544 799999999876


Q ss_pred             CCCc----eEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        272 SDDH----VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       272 ~~~~----~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ....    .....++     ..|.|..+..+|+|.|+|.|.|.....
T Consensus       195 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          195 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             SSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            5411    1111122     248999999999999999999987654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.64  E-value=3.4e-15  Score=158.10  Aligned_cols=167  Identities=19%  Similarity=0.317  Sum_probs=116.8

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccC-----CCeEEEEECC--Ee---ec---------CCCCeEEEee--ceEEEEcc
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDG--NS---LD---------SDDHVTYEHD--GFVLVLNG  105 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P-----~p~V~W~kdg--~~---I~---------~~~~~~~~~~--gs~L~I~~  105 (940)
                      .+...|..+.+.+|++|+|.|.+.+.|     .+.|.|+|+.  ..   +.         ...++.....  ...|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            345567888999999999999999887     6899999842  21   10         1234444322  24689999


Q ss_pred             cccCCCeEEEEEEEeCCCceE-EEEEEEEeccc-----------CCeeEecCCceeecCCCcEEEEEEeCCCC--CCeEE
Q psy11143        106 VRESDAGVYNCVAQNSEGSAE-SVAMIRINGHR-----------APRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRIS  171 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g~~~-~~~~L~V~~~~-----------~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P--~p~It  171 (940)
                      ++.+|+|.|+|.+.|..+... ..+.|.|...+           ++.....+....+.+|++++|.|.+.+.+  .+.+.
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  162 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMH  162 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEE
Confidence            999999999999998755422 24567776532           22234444556799999999999999874  56899


Q ss_pred             EeeCC--eecc-----------------ccCceEEee-----eceEEEeecccCCCceEEEEEEcC
Q psy11143        172 WSKDE--AEFV-----------------EDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       172 W~k~g--~~i~-----------------~~~~~~~~~-----~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      |++++  ..+.                 ...++....     ..+|.|.+++.+|+|.|+|.+.|.
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99953  2110                 023444432     247999999999999999999984

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.64  E-value=4.7e-16  Score=162.30  Aligned_cols=172  Identities=15%  Similarity=0.235  Sum_probs=116.6

Q ss_pred             CCCeEEeCCCcEE--EecCCeEEEEEEeecc---CC-CeEEEEECCEeecCCCCe--------EEEeeceEEEEcccccC
Q psy11143         44 APPIFIQRPVSTT--YSTGSTSRITCLVEGH---PL-PQMTWFHDGNSLDSDDHV--------TYEHDGFVLVLNGVRES  109 (940)
Q Consensus        44 ~pP~~~~~p~~~~--V~eGesv~L~C~v~g~---P~-p~V~W~kdg~~I~~~~~~--------~~~~~gs~L~I~~v~~~  109 (940)
                      .+|.+...|....  +.+|+.++|.|.+.|.   |. +.|+|+|++..+......        ++. ....|.|.+++.+
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~   86 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR-VVSTLPIQHQDWM   86 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEE-EEEEEECCHHHHH
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEE-EEEEEEEcHHHcC
Confidence            3566655555544  7899999999999986   33 799999999887532111        111 1235899999999


Q ss_pred             CCeEEEEEEEeCCCceEEEEEEE--EecccCCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCCeeccccCc-
Q psy11143        110 DAGVYNCVAQNSEGSAESVAMIR--INGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDRN-  184 (940)
Q Consensus       110 DsG~YtC~a~n~~g~~~~~~~L~--V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g~~i~~~~~-  184 (940)
                      |+|.|+|.|.|..+.......+.  +....+|.+.+.+......+|+.++|.|.+.| .|.+ .|+|+++|..+..... 
T Consensus        87 D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  166 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDT  166 (218)
T ss_dssp             TTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC
T ss_pred             CCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceec
Confidence            99999999999877542222222  13334566665554444446999999999998 6765 9999999987743211 


Q ss_pred             -eEEeeec------eEEEeecccCCCceEEEEEEcCCcc
Q psy11143        185 -HKIHRTG------SLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       185 -~~~~~~~------sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                       .....++      .|.|.....+|.|.|+|.|.|....
T Consensus       167 ~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          167 APVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             ccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence             1112222      3555555555799999999997654

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.64  E-value=3.6e-15  Score=158.81  Aligned_cols=163  Identities=17%  Similarity=0.340  Sum_probs=114.7

Q ss_pred             CCCeeEEecCCeEEEEEEEeee--CCCeEEEEECC--eecC------------CCCceEEeecC--eEEEEeeeccCCCe
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NSLD------------SDDHVTYEHDG--FVLVLNGVRESDAG  296 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~--P~p~ItW~k~g--~~l~------------~~~~~~~~~~g--~sL~I~~v~~~DsG  296 (940)
                      .+....+.+|++++|.|.+.+.  |.+.+.|+|+.  ....            ...++.....+  .+|.|.+++.+|+|
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   87 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA   87 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence            3456788999999999999887  78899999852  1110            12344443332  35999999999999


Q ss_pred             EEEEEEEeCCCCc---eeEEEEEEeecc-------------------CCeEEEcCCceeecCCCeEEEEEeecCcC--CC
Q psy11143        297 VYNCVAQNSEGSA---ESVAMIRINGHR-------------------APRLVVKPFDMRAPAGSSVEIPCKPDGEP--LP  352 (940)
Q Consensus       297 ~YtC~A~N~~Gs~---~~s~~l~V~~~~-------------------~P~i~~~p~~~~v~~G~~vtL~C~v~g~P--~p  352 (940)
                      .|+|.+.|..+..   .....|.|....                   ++.+.. +....+.+|++++|.|.+.+.|  .+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~  166 (256)
T 3ux9_B           88 DYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSSY  166 (256)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             EEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCccccc
Confidence            9999999976532   233456665422                   113333 3445689999999999999877  68


Q ss_pred             eEEEEeC--Ceee------c-----------cCCcEEEeeec-----eEEEecCCCCCCeEEEEEEEeCC
Q psy11143        353 RISWSKD--EAEF------V-----------EDRNHKIHRTG-----SLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       353 ~i~W~k~--g~~i------~-----------~~~~~~i~~~~-----sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      .+.|+|+  +..+      .           ...++.+..++     +|.|.+++.+|+|.|+|.|.|..
T Consensus       167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            9999986  3211      1           12356555432     59999999999999999999963

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.64  E-value=2.1e-16  Score=165.64  Aligned_cols=169  Identities=17%  Similarity=0.300  Sum_probs=101.0

Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC--eec------------CCCCceEEee--cCeEEEEeeeccCC
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL------------DSDDHVTYEH--DGFVLVLNGVRESD  294 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g--~~l------------~~~~~~~~~~--~g~sL~I~~v~~~D  294 (940)
                      .+...|....+.+|++++|.|.+.+.|.+.|.|+|++  ..+            ....++....  ...+|.|.+++.+|
T Consensus        25 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  104 (233)
T 3bqu_C           25 TVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSED  104 (233)
T ss_dssp             CEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCC
T ss_pred             eEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHH
Confidence            3444567778899999999999999988899999853  211            0112332221  22359999999999


Q ss_pred             CeEEEEEEEeCCCCce-eEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeeccC-Cc-
Q psy11143        295 AGVYNCVAQNSEGSAE-SVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVED-RN-  368 (940)
Q Consensus       295 sG~YtC~A~N~~Gs~~-~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~-~~-  368 (940)
                      +|.|+|.+.|..+... ....+.|... .+|.+...+......+|+.++|.|.+.|. |.+ .|+|+|+|..+..+ .. 
T Consensus       105 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  184 (233)
T 3bqu_C          105 VADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS  184 (233)
T ss_dssp             CSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEE
T ss_pred             CEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEe
Confidence            9999999998765332 2234555432 36777765544444579999999999985 444 79999999876543 11 


Q ss_pred             --------EEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        369 --------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       369 --------~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                              ......+.|.|..+..+|+|.|+|.|.|...
T Consensus       185 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          185 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             cCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence                    0112234689999999999999999999744

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.64  E-value=1.2e-15  Score=161.49  Aligned_cols=169  Identities=16%  Similarity=0.239  Sum_probs=120.6

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEE----------------CCeecCCC---CceEEee---cCeEEEEee
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH----------------DGNSLDSD---DHVTYEH---DGFVLVLNG  289 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k----------------~g~~l~~~---~~~~~~~---~g~sL~I~~  289 (940)
                      +...+....+.+|++++|.|.+.+.+.+.|.|+|                ++......   .++.+..   ...+|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            4455677889999999999999999999999999                33322222   3444432   123699999


Q ss_pred             eccCCCeEEEEEEEeCCCC----ceeEEEEEEee----ccCCeEE-EcCCceeecCCCeEEEEEeecCcCCC--eEEEEe
Q psy11143        290 VRESDAGVYNCVAQNSEGS----AESVAMIRING----HRAPRLV-VKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK  358 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~Gs----~~~s~~l~V~~----~~~P~i~-~~p~~~~v~~G~~vtL~C~v~g~P~p--~i~W~k  358 (940)
                      ++.+|+|.|+|.+.|..+.    ......+.|..    ..+|.+. ..+....+.+|+.++|.|.+.|.|++  .|+|+|
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  163 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  163 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEE
Confidence            9999999999999976541    12334566653    2356554 34445556779999999999997765  899999


Q ss_pred             CCeeeccCCcEE--------------EeeeceEEEecCCCCC-CeEEEEEEEeCCee
Q psy11143        359 DEAEFVEDRNHK--------------IHRTGSLRLYNIGPQD-SGLYRCTASNLLGE  400 (940)
Q Consensus       359 ~g~~i~~~~~~~--------------i~~~~sL~I~~v~~~D-~G~YtC~A~N~~G~  400 (940)
                      +|..+.......              ....+.|.|.....+| .|.|+|.|.|....
T Consensus       164 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          164 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             TTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            998876432111              1122358888888888 99999999997654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.64  E-value=8.5e-16  Score=158.87  Aligned_cols=167  Identities=16%  Similarity=0.237  Sum_probs=114.9

Q ss_pred             EeCCCcEE-EecCCeEEEEEEeeccC----CCeEEEEECCEeecCCC--------CeEEEeeceEEEEcccccCCCeEEE
Q psy11143         49 IQRPVSTT-YSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDSDD--------HVTYEHDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        49 ~~~p~~~~-V~eGesv~L~C~v~g~P----~p~V~W~kdg~~I~~~~--------~~~~~~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      +..|.... +.+|++++|.|.+.|.|    .+.|.|+|++..+....        ..++. ....|.|.+++.+|+|.|+
T Consensus         6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~   84 (207)
T 2vol_A            6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR-SVSELPIMHQDWLNGKEFK   84 (207)
T ss_dssp             EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEE-EEEEEECCHHHHHTTCCEE
T ss_pred             EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEE-EEEEEEEehhHcCCCCEEE
Confidence            44455444 88999999999999874    24999999998775321        01111 1235799999999999999


Q ss_pred             EEEEeCCCceEEEEEEEE--ecccCCeeEecCCceeecCCCcEEEEEEeCC-CCC-CeEEEeeCCeeccccCc--eEEee
Q psy11143        116 CVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPL-PRISWSKDEAEFVEDRN--HKIHR  189 (940)
Q Consensus       116 C~a~n~~g~~~~~~~L~V--~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~-p~ItW~k~g~~i~~~~~--~~~~~  189 (940)
                      |.|.|..+.......+.+  ....+|.+.+.+......+|+.++|.|.+.| .|. +.|+|+++|..+.....  .....
T Consensus        85 C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  164 (207)
T 2vol_A           85 CRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDT  164 (207)
T ss_dssp             EEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECT
T ss_pred             EEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECC
Confidence            999998886433333332  3344577666554444456999999999998 455 38999999987753221  11122


Q ss_pred             ec------eEEEeecccCCCceEEEEEEcCCcc
Q psy11143        190 TG------SLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       190 ~~------sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                      ++      .|.|.....+|.|.|+|.|.|....
T Consensus       165 ~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          165 DGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             TSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             CCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            22      3566666667899999999997543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.64  E-value=3e-15  Score=157.18  Aligned_cols=177  Identities=14%  Similarity=0.222  Sum_probs=118.6

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Ee---e---c-----------CCCCeEEEe----eceEEEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---L---D-----------SDDHVTYEH----DGFVLVL  103 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~---I---~-----------~~~~~~~~~----~gs~L~I  103 (940)
                      ..+|..+.+.+|++|+|.|.+.+.+  .+.|.|||++  ..   +   .           ...++.+..    ....|.|
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (227)
T 1mju_H            4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL   83 (227)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEE
Confidence            3456778899999999999999876  6799999863  21   1   1           023444442    2356899


Q ss_pred             cccccCCCeEEEEEEEeCCCceE-EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCCee
Q psy11143        104 NGVRESDAGVYNCVAQNSEGSAE-SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAE  178 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g~~~-~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g~~  178 (940)
                      .+++.+|+|.|.|.+.+..+... ..+.|.|...  ..|.+........+.+|+.++|.|.+.|. |.+ .|+|++++..
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  163 (227)
T 1mju_H           84 SSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLS  163 (227)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCc
Confidence            99999999999999998632211 2346777642  23555544333456789999999999984 776 9999998876


Q ss_pred             ccc--cCc----eEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        179 FVE--DRN----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       179 i~~--~~~----~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      +..  ...    ......+.|.|..+..+| |.|+|.|.|..+.......+.+.
T Consensus       164 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          164 SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            421  111    112234579999988878 99999999987776666666655

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.64  E-value=2.5e-16  Score=164.99  Aligned_cols=169  Identities=16%  Similarity=0.238  Sum_probs=117.9

Q ss_pred             CCeeEEecCCeEEEEEEEeeeCC-C-eEEEEECC--eec------------CCCCceEEeec--CeEEEEeeeccCCCeE
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHPL-P-QMTWFHDG--NSL------------DSDDHVTYEHD--GFVLVLNGVRESDAGV  297 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P~-p-~ItW~k~g--~~l------------~~~~~~~~~~~--g~sL~I~~v~~~DsG~  297 (940)
                      |....+.+|++++|.|.+.+.+. + .|.|+|++  ..+            ....++.....  ..+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            56677889999999999988643 4 79999863  221            11234444332  2369999999999999


Q ss_pred             EEEEEEeCCCC---ceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCcCCC--eEEEEeCCeeeccCCcE-
Q psy11143        298 YNCVAQNSEGS---AESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNH-  369 (940)
Q Consensus       298 YtC~A~N~~Gs---~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p--~i~W~k~g~~i~~~~~~-  369 (940)
                      |+|.|.|..+.   ......+.|..  ..+|.+...+.......|+.++|.|.+.|.+++  .|+|+|+|..+..+... 
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            99999999873   11233444522  245666554443344568899999999986443  99999999887543111 


Q ss_pred             --------EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143        370 --------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       370 --------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s  404 (940)
                              .....+.|.|..+..+|.|.|+|.|.|..+....+
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  228 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  228 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence                    00122468899999999999999999998764443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.64  E-value=3.5e-15  Score=155.10  Aligned_cols=170  Identities=16%  Similarity=0.261  Sum_probs=120.2

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Ee---e---cC-------------CCCeEEEee----ceEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---L---DS-------------DDHVTYEHD----GFVLVL  103 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~---I---~~-------------~~~~~~~~~----gs~L~I  103 (940)
                      +|..+.+.+|++++|.|.+.+.+  .+.|.|+|++  ..   +   ..             ..++.+..+    ...|.|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            35667899999999999998866  6799999853  11   1   00             234444422    236899


Q ss_pred             cccccCCCeEEEEEEEeCCCce-E--EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCC
Q psy11143        104 NGVRESDAGVYNCVAQNSEGSA-E--SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDE  176 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g~~-~--~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g  176 (940)
                      .+++.+|+|.|+|.+.+..+.. .  ..+.|.|...  ..|.+...+....+.+|+.++|.|.+.|. |.| .|+|++++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence            9999999999999999876432 1  2456666542  34565555544457889999999999986 888 99999987


Q ss_pred             eecc--ccCc----eEEeeeceEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143        177 AEFV--EDRN----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  221 (940)
Q Consensus       177 ~~i~--~~~~----~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~  221 (940)
                      ....  ....    ......+.|.|.++..++ |.|+|.|.|..+.....+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          166 LSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             CCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            6310  0000    122335679999988866 999999999988755543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.64  E-value=2.8e-15  Score=152.46  Aligned_cols=155  Identities=13%  Similarity=0.239  Sum_probs=115.2

Q ss_pred             CCcEEEecCCeEEEEEEee--ccCCCeEEEEE--CCEee----------cCCCCeEEEeeceEEEEcccccCCCeEEEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVE--GHPLPQMTWFH--DGNSL----------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~--g~P~p~V~W~k--dg~~I----------~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      +..+...+|++|+|.|...  +.+.+.|.|+|  ++..|          ....+..+..++ .|.|.+++.+|+|.|+|.
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng-sL~I~~v~~~DsG~Y~c~   84 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-TLKIKHLKTDDQDIYKVS   84 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS-CEEECSCCGGGCEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC-CEEECCCChhhCEEEEEE
Confidence            3456788999999999542  34567999999  88876          344566666666 569999999999999999


Q ss_pred             EEeCCCceEE--EEEEEEeccc-CCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEE
Q psy11143        118 AQNSEGSAES--VAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR  194 (940)
Q Consensus       118 a~n~~g~~~~--~~~L~V~~~~-~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~  194 (940)
                      +.|..|....  .+.|.|.... .|.+..        .+..++|.|.+.+.|.+.+.|++++..+ ..      ....|.
T Consensus        85 ~~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~------~~~~i~  149 (182)
T 1hnf_A           85 IYDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL------SQRVIT  149 (182)
T ss_dssp             EEETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE------ESSCEE
T ss_pred             EEeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC------CCcEEE
Confidence            9999887654  4556665432 233332        2347999999999999999999999877 21      122344


Q ss_pred             EeecccCCCceEEEEEEcCCcceeeeeee
Q psy11143        195 LYNIGPQDSGLYRCTASNLLGEDVAEGYL  223 (940)
Q Consensus       195 I~~v~~~DsG~YtC~a~N~~g~~s~s~~L  223 (940)
                      +.. ..+|+|.|+|.|.|..+..+....+
T Consensus       150 ~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          150 HKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             EEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             Eec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            333 5789999999999999987776555

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.63  E-value=1.7e-15  Score=157.49  Aligned_cols=170  Identities=16%  Similarity=0.261  Sum_probs=121.2

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--ee---c---C-------------CCCceEEeec----CeEEEEe
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---L---D-------------SDDHVTYEHD----GFVLVLN  288 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~---l---~-------------~~~~~~~~~~----g~sL~I~  288 (940)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +   .             ...++.+..+    ..+|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            4556888999999999999876  6899999863  21   1   0             0245555432    2369999


Q ss_pred             eeccCCCeEEEEEEEeCCCCc-e--eEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCe
Q psy11143        289 GVRESDAGVYNCVAQNSEGSA-E--SVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEA  361 (940)
Q Consensus       289 ~v~~~DsG~YtC~A~N~~Gs~-~--~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~  361 (940)
                      +++.+|+|.|+|.+.|..+.. .  ..+.|.|..  ..+|.+...+....+.+|+.++|.|.+.|. |.| .|+|++++.
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            999999999999999976432 1  234566653  245666655544456789999999999997 999 999999886


Q ss_pred             ee---ccCCc---EEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        362 EF---VEDRN---HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       362 ~i---~~~~~---~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      .+   .....   ......+.|.|..+..+| |.|+|.|.|..|....++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          167 SSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             ccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            31   00000   122235679999988866 9999999999997666543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.63  E-value=2.8e-16  Score=164.58  Aligned_cols=168  Identities=17%  Similarity=0.253  Sum_probs=116.5

Q ss_pred             CCcEEEecCCeEEEEEEeeccC-CC-eEEEEECC--Eee------------cCCCCeEEEe--eceEEEEcccccCCCeE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHP-LP-QMTWFHDG--NSL------------DSDDHVTYEH--DGFVLVLNGVRESDAGV  113 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P-~p-~V~W~kdg--~~I------------~~~~~~~~~~--~gs~L~I~~v~~~DsG~  113 (940)
                      |..+.+.+|++++|.|.+.+.+ .+ .|.|+|++  ..+            ....++....  ....|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            7788899999999999998754 34 79999863  211            0122343332  23468999999999999


Q ss_pred             EEEEEEeCCCce---EEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CC-CeEEEeeCCeeccccCce-
Q psy11143        114 YNCVAQNSEGSA---ESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEAEFVEDRNH-  185 (940)
Q Consensus       114 YtC~a~n~~g~~---~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~-p~ItW~k~g~~i~~~~~~-  185 (940)
                      |+|.+.+..+..   ...+.|.|...  .+|.+...+....+.+|+.++|.|.+.+. |. +.|+|+++|..+...... 
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            999999987731   11344555322  24555554444444578999999999985 44 389999999887543110 


Q ss_pred             --------EEeeeceEEEeecccCCCceEEEEEEcCCcceee
Q psy11143        186 --------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA  219 (940)
Q Consensus       186 --------~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~  219 (940)
                              .....+.|.|.++..+|+|.|+|.|.|.......
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  227 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  227 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence                    1112246889999999999999999998765433

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.63  E-value=2.1e-15  Score=151.57  Aligned_cols=153  Identities=10%  Similarity=0.122  Sum_probs=111.1

Q ss_pred             CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC------------CCCeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS------------DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~------------~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +.+.+.+|++|+|.|.+.+ |.+.|.|+|++..+..            ..+..+......|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            3567889999999999854 8889999999875421            11233332334579999999999999999998


Q ss_pred             CCCceEEEEEEEEecccC-CeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecc
Q psy11143        121 SEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG  199 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~~~~-P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~  199 (940)
                      ..|  ...+.|.|..... |.+......        ..|.|.+.+.|.|.++|++++..+......      .|.+.  .
T Consensus        82 ~~~--~~~~~L~V~~~~~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~------~l~~~--~  143 (171)
T 1ccz_A           82 ITD--TMKFFLYVLEMVSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLRQK------TMSYQ--W  143 (171)
T ss_dssp             CCS--CEEEEEEEECCCCCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEEEESSS------EEEEE--C
T ss_pred             CCC--cEEEEEEEECcCCCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECcCCcce------EEEEe--c
Confidence            877  5566777765422 444332211        279999999899999999999877643221      23333  3


Q ss_pred             cCCCceEEEEEEcCCcceeeeeeee
Q psy11143        200 PQDSGLYRCTASNLLGEDVAEGYLT  224 (940)
Q Consensus       200 ~~DsG~YtC~a~N~~g~~s~s~~L~  224 (940)
                      ..|+|.|+|.|.|..+..+..+.|.
T Consensus       144 ~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          144 TNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             SCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             cCCCceEEEEEEcccCcccceeEEe
Confidence            6789999999999999877766554

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.63  E-value=4.2e-15  Score=157.21  Aligned_cols=171  Identities=20%  Similarity=0.303  Sum_probs=120.3

Q ss_pred             eeEecCCceeecCCCcEEEEEEeCCCCCCeEEEee----------------CCeecccc---CceEEee----eceEEEe
Q psy11143        140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK----------------DEAEFVED---RNHKIHR----TGSLRLY  196 (940)
Q Consensus       140 ~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k----------------~g~~i~~~---~~~~~~~----~~sL~I~  196 (940)
                      .+...+..+.+.+|++++|.|.+.+.+.+.|.|+|                ++......   .++.+..    ..+|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            34556777889999999999999999999999998                22222111   3444432    2379999


Q ss_pred             ecccCCCceEEEEEEcCCc----ceeeeeeeeecC-----CCCeee-eCCCeeEEecCCeEEEEEEEeeeCCC--eEEEE
Q psy11143        197 NIGPQDSGLYRCTASNLLG----EDVAEGYLTVTG-----APPIFI-QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWF  264 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~g----~~s~s~~L~V~~-----~~p~~~-~~p~~~~v~~G~~v~L~C~v~G~P~p--~ItW~  264 (940)
                      +++.+|+|.|+|.+.+..+    .......|.|..     .+|.+. ..+....+..|+.++|.|.+.|.|++  .++|+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  162 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  162 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence            9999999999999987643    122344566653     234433 34444556679999999999997665  89999


Q ss_pred             ECCeecCCCCceEEe--------ecC-----eEEEEeeeccCC-CeEEEEEEEeCCCCce
Q psy11143        265 HDGNSLDSDDHVTYE--------HDG-----FVLVLNGVRESD-AGVYNCVAQNSEGSAE  310 (940)
Q Consensus       265 k~g~~l~~~~~~~~~--------~~g-----~sL~I~~v~~~D-sG~YtC~A~N~~Gs~~  310 (940)
                      ++|..+.........        .++     ..|.|.....+| .|.|+|.|.|......
T Consensus       163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            999988754221110        122     237888887778 9999999999876554

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.63  E-value=5.4e-15  Score=157.47  Aligned_cols=165  Identities=16%  Similarity=0.306  Sum_probs=114.1

Q ss_pred             eCCCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--Ee---e-c--------CCCCeEEEee--ceEEEEcccccCCC
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NS---L-D--------SDDHVTYEHD--GFVLVLNGVRESDA  111 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~~---I-~--------~~~~~~~~~~--gs~L~I~~v~~~Ds  111 (940)
                      ..|..+.+.+|++|+|.|.+.+.  |.+.|.|+|++  ..   + .        ...++.....  ...|.|.+++.+|+
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE   86 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence            34567889999999999999886  77899999842  11   1 0        1224444322  23589999999999


Q ss_pred             eEEEEEEEeCCCceE---EEEEEEEecccC------------------CeeEecCCceeecCCCcEEEEEEeCCCC--CC
Q psy11143        112 GVYNCVAQNSEGSAE---SVAMIRINGHRA------------------PRLVVKPFDMRAPAGSSVEIPCKPDGEP--LP  168 (940)
Q Consensus       112 G~YtC~a~n~~g~~~---~~~~L~V~~~~~------------------P~~~~~p~~~~v~~Ge~vtL~C~v~g~P--~p  168 (940)
                      |.|+|.+.+..+...   ..+.|.|...+.                  +.....+....+.+|++++|.|.+.+.+  .+
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  166 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY  166 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence            999999998765322   245666665331                  1123344456699999999999999876  77


Q ss_pred             eEEEeeC--Ceecc-----------------ccCceEEeee-----ceEEEeecccCCCceEEEEEEcCC
Q psy11143        169 RISWSKD--EAEFV-----------------EDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       169 ~ItW~k~--g~~i~-----------------~~~~~~~~~~-----~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      .+.|+++  +..+.                 ...++.+..+     .+|.|.+++.+|+|.|+|.+.|..
T Consensus       167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            9999985  32220                 1124444332     249999999999999999999853

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.62  E-value=7.5e-15  Score=152.06  Aligned_cols=178  Identities=21%  Similarity=0.310  Sum_probs=130.9

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEe--eceEEEEcccccCCCeEEEEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEH--DGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~--~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .+|.+ ..|..+.+.+|+.+.|.|.+.|.|.+.|.|+|+|..+....  ++.+..  ....|.|.+++.+|+|.|+|.|.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            35666 57788999999999999999999999999999999987653  344442  34668999999999999999999


Q ss_pred             eCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC----CCCCC--eEEEeeCCeeccccCceEEe---ee
Q psy11143        120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD----GEPLP--RISWSKDEAEFVEDRNHKIH---RT  190 (940)
Q Consensus       120 n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~----g~P~p--~ItW~k~g~~i~~~~~~~~~---~~  190 (940)
                      |..|.....+.|.|...+.+.....    ....+..+.|.|...    +.|..  .+.|.+++............   ..
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p~~~~----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~  172 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSPSIDQ----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME  172 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCCEEEE----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHH
T ss_pred             ECCCceEEEEEEEECCCCCCCcceE----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccccccc
Confidence            9999988888888876544322211    123467789999743    23333  47788776532111110000   11


Q ss_pred             ceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       191 ~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      ..|.|.++.+.+.|.|+|.|.|..|....+..+.+.
T Consensus       173 ~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          173 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             TEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             ccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            579999999999999999999999987776666655

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.62  E-value=4.3e-15  Score=155.51  Aligned_cols=167  Identities=14%  Similarity=0.256  Sum_probs=115.9

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Eeec-----------------CCCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSLD-----------------SDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~I~-----------------~~~~~~~~~~----gs~L~I~~  105 (940)
                      +|..+.+.+|++|+|.|.+.+.|  .+.|.|+|+.  ..+.                 ...++.+..+    ...|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            35567899999999999998876  6789999853  2110                 1234444432    35689999


Q ss_pred             cccCCCeEEEEEEEeCCC-----ce-E--EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEe
Q psy11143        106 VRESDAGVYNCVAQNSEG-----SA-E--SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWS  173 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g-----~~-~--~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~  173 (940)
                      ++.+|+|.|.|.+.+..|     .. .  ..+.|.|...  ..|.+...+....+.+|+.++|.|.+.+. |.+ .|+|+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            999999999999998764     21 1  2456777652  23555443323346789999999999985 776 99999


Q ss_pred             eCCeeccc--c-----CceEEeeeceEEEeecccCCCceEEEEEEcCCccee
Q psy11143        174 KDEAEFVE--D-----RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  218 (940)
Q Consensus       174 k~g~~i~~--~-----~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s  218 (940)
                      +++..+..  .     ........+.|.|.++..+| |.|+|.|.|..+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            98865321  0     00112223468999998888 999999999766544

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.61  E-value=5e-15  Score=150.09  Aligned_cols=153  Identities=16%  Similarity=0.244  Sum_probs=110.4

Q ss_pred             CeeEEecCCeEEEEEEEee-eCCCeEEEEEC-CeecC------------CC--CceEEeecCeEEEEeeeccCCCeEEEE
Q psy11143        237 VSTTYSTGSTSRITCLVEG-HPLPQMTWFHD-GNSLD------------SD--DHVTYEHDGFVLVLNGVRESDAGVYNC  300 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G-~P~p~ItW~k~-g~~l~------------~~--~~~~~~~~g~sL~I~~v~~~DsG~YtC  300 (940)
                      ....+.+|++++|.|.+.+ .+.+.|.|+|. +..+.            ..  .++.+...+.+|.|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            4567889999999999854 34679999994 32211            11  355553333459999999999999999


Q ss_pred             EEEeCCCCceeEEEEEEeec-cCCeEEEcCCceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeeccCCcEEEeeeceEE
Q psy11143        301 VAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR  378 (940)
Q Consensus       301 ~A~N~~Gs~~~s~~l~V~~~-~~P~i~~~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~  378 (940)
                      .+.+.. .....+.|.|... ..|.+..        .+.+++|.|.+ .| |.|.|.|++++..+..      ..+.+|.
T Consensus        87 ~v~~~~-~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~------~~~~~l~  150 (180)
T 2dru_A           87 RMLHET-EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS------LRQKTMS  150 (180)
T ss_dssp             EEESSS-EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE------ESSSEEE
T ss_pred             EEEcCC-eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC------CCCCEEE
Confidence            998876 5555666777542 2244332        23679999999 66 9999999999987751      1234566


Q ss_pred             EecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143        379 LYNIGPQDSGLYRCTASNLLGEDVAEGYL  407 (940)
Q Consensus       379 I~~v~~~D~G~YtC~A~N~~G~~~~s~~L  407 (940)
                      +..  .+|+|.|+|.|.|..|.......+
T Consensus       151 ~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          151 YQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             EEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEE--hhcCccEEEEEecCcCccccceeE
Confidence            633  789999999999999988766543

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.61  E-value=8.1e-15  Score=157.71  Aligned_cols=169  Identities=22%  Similarity=0.340  Sum_probs=118.5

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccC------CCeEEEEEC--CEe---ec---------CCCCeEEEee--ceEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHP------LPQMTWFHD--GNS---LD---------SDDHVTYEHD--GFVLV  102 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P------~p~V~W~kd--g~~---I~---------~~~~~~~~~~--gs~L~  102 (940)
                      .+.+...|..+.+.+|++|+|.|.+.+.|      .+.|.|+|+  +..   +.         ...++.+...  ...|.
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            45666778889999999999999998877      679999985  221   10         1234444322  34689


Q ss_pred             EcccccCCCeEEEEEEEeCCCceE-EEEEEEEeccc----------------CCe-eEecCCceeecCCCcEEEEEEeCC
Q psy11143        103 LNGVRESDAGVYNCVAQNSEGSAE-SVAMIRINGHR----------------APR-LVVKPFDMRAPAGSSVEIPCKPDG  164 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g~~~-~~~~L~V~~~~----------------~P~-~~~~p~~~~v~~Ge~vtL~C~v~g  164 (940)
                      |.+++.+|+|.|.|.+.+..+... ..+.|.|...+                .|. ....+....+.+|++++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  164 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG  164 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence            999999999999999998754322 23567776542                122 223344457999999999999998


Q ss_pred             CCC--CeEEEeeCC--ee---cc---c-----------cCceEEee-----eceEEEeecccCCCceEEEEEEcC
Q psy11143        165 EPL--PRISWSKDE--AE---FV---E-----------DRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       165 ~P~--p~ItW~k~g--~~---i~---~-----------~~~~~~~~-----~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      .+.  +.+.|+++.  ..   +.   .           ..++.+..     ..+|.|.+++.+|+|.|+|.+.|.
T Consensus       165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            764  799999953  21   11   0           22333321     347999999999999999999985

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.61  E-value=3.4e-15  Score=159.62  Aligned_cols=184  Identities=18%  Similarity=0.272  Sum_probs=115.9

Q ss_pred             CeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC--CeecC-----C--C----------CceEE----eecCeEEE
Q psy11143        230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD-----S--D----------DHVTY----EHDGFVLV  286 (940)
Q Consensus       230 p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~--g~~l~-----~--~----------~~~~~----~~~g~sL~  286 (940)
                      |.+...+....+.+|++++|.|.+.+.|.+.+.|+|.  +....     .  .          .+...    .....+|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            3455567778899999999999999999999999983  21110     0  0          01111    11233599


Q ss_pred             EeeeccCCCeEEEEEEEeCCCC---ceeEEEEEEeecc---------------CCeEEEcCCceeecCCCeEEEEEeecC
Q psy11143        287 LNGVRESDAGVYNCVAQNSEGS---AESVAMIRINGHR---------------APRLVVKPFDMRAPAGSSVEIPCKPDG  348 (940)
Q Consensus       287 I~~v~~~DsG~YtC~A~N~~Gs---~~~s~~l~V~~~~---------------~P~i~~~p~~~~v~~G~~vtL~C~v~g  348 (940)
                      |.+++.+|+|.|.|.+.|..+.   ......|.|....               +|.+...|....+.+|++|+|.|.+.+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  162 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET  162 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence            9999999999999999998762   2334556665421               456777777789999999999999987


Q ss_pred             c-CCCeEEEEeCCe--e---ec---------cCCcEEEee-----eceEEEecCCCCCCeEEEEEEEeCC---eeE--EE
Q psy11143        349 E-PLPRISWSKDEA--E---FV---------EDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNLL---GED--VA  403 (940)
Q Consensus       349 ~-P~p~i~W~k~g~--~---i~---------~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A~N~~---G~~--~~  403 (940)
                      . |.+.+.|+|.+.  .   +.         ...++.+..     ..+|.|.+++.+|+|.|.|.|.+..   +..  ..
T Consensus       163 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~fg~  242 (259)
T 3omz_A          163 SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGK  242 (259)
T ss_dssp             CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTCCCEECC
T ss_pred             ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCccCCCCceEECC
Confidence            5 788999998431  1   10         123555442     2369999999999999999998532   111  12


Q ss_pred             EEEEEEecCC
Q psy11143        404 EGYLTVTGEN  413 (940)
Q Consensus       404 s~~L~V~~~~  413 (940)
                      ...|.|++.+
T Consensus       243 GT~l~v~~~~  252 (259)
T 3omz_A          243 GTRVTVEPRS  252 (259)
T ss_dssp             CEEEEEEC--
T ss_pred             CCEEEEeeCc
Confidence            3457777543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.61  E-value=1.3e-14  Score=151.77  Aligned_cols=168  Identities=17%  Similarity=0.274  Sum_probs=119.3

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--ee---c--------------CCCCceEEeec----CeEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---L--------------DSDDHVTYEHD----GFVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~---l--------------~~~~~~~~~~~----g~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +              ....++.+..+    ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            3467788999999999998865  4789999853  21   1              01235555432    246999999


Q ss_pred             ccCCCeEEEEEEEeCCC---C---ceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEe-C
Q psy11143        291 RESDAGVYNCVAQNSEG---S---AESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSK-D  359 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~G---s---~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k-~  359 (940)
                      +.+|+|.|.|.+.+..|   .   ....+.|.|..  ..+|.+...+....+.+|+.++|.|.+.|. |.| .|.|++ +
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  166 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN  166 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence            99999999999998753   1   11234666753  245666543322345789999999999987 877 999999 8


Q ss_pred             Ceeecc---------CCcEEEeeeceEEEecCCC--CCCeEEEEEEEeCCeeEEEEE
Q psy11143        360 EAEFVE---------DRNHKIHRTGSLRLYNIGP--QDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       360 g~~i~~---------~~~~~i~~~~sL~I~~v~~--~D~G~YtC~A~N~~G~~~~s~  405 (940)
                      |..+..         +..+  ...+.|.|.....  +|.|.|+|.|.|..|......
T Consensus       167 g~~l~~~~~~~~~~~~~~~--~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          167 NSDISSTRGFPSVLRGGKY--AATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             SCBCSCEEECCCEEETTEE--EEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             CCccceeEECCccccCCeE--EEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            877643         1112  2245688887776  789999999999999876654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.61  E-value=2.9e-15  Score=160.15  Aligned_cols=168  Identities=20%  Similarity=0.305  Sum_probs=107.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---ecC-C-------------CCeEEE----eeceEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---LDS-D-------------DHVTYE----HDGFVL  101 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I~~-~-------------~~~~~~----~~gs~L  101 (940)
                      +|.+...|..+.+.+|++|+|.|.+.+.|.+.|.|+|.  +..   +.. .             .+....    .....|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            35566778889999999999999999988889999982  111   100 0             011111    223458


Q ss_pred             EEcccccCCCeEEEEEEEeCCCc---eEEEEEEEEeccc---------------CCeeEecCCceeecCCCcEEEEEEeC
Q psy11143        102 VLNGVRESDAGVYNCVAQNSEGS---AESVAMIRINGHR---------------APRLVVKPFDMRAPAGSSVEIPCKPD  163 (940)
Q Consensus       102 ~I~~v~~~DsG~YtC~a~n~~g~---~~~~~~L~V~~~~---------------~P~~~~~p~~~~v~~Ge~vtL~C~v~  163 (940)
                      .|.+++.+|+|.|+|.+.+..+.   ....+.|.|....               .|.+...+....+.+|++++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            99999999999999999987663   2224566666532               34566677778999999999999988


Q ss_pred             CC-CCCeEEEeeCC--eecc------------ccCceEEee-----eceEEEeecccCCCceEEEEEEc
Q psy11143        164 GE-PLPRISWSKDE--AEFV------------EDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASN  212 (940)
Q Consensus       164 g~-P~p~ItW~k~g--~~i~------------~~~~~~~~~-----~~sL~I~~v~~~DsG~YtC~a~N  212 (940)
                      +. |.+.+.|++.+  ..+.            ...++.+..     ...|.|.+++.+|+|.|+|.+.+
T Consensus       162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            74 78899999843  1110            012333321     23599999999999999999985

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.61  E-value=1.5e-14  Score=151.21  Aligned_cols=171  Identities=17%  Similarity=0.268  Sum_probs=118.1

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--E---eec--------------CCCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--N---SLD--------------SDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~---~I~--------------~~~~~~~~~~----gs~L~I~~  105 (940)
                      +|..+.+.+|++|+|.|.+.+.+  .+.|.|||..  .   .+.              ...++.+..+    ...|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (223)
T 1dee_B            6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS   85 (223)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence            34567899999999999998765  4689999853  1   110              1234444432    24689999


Q ss_pred             cccCCCeEEEEEEEeCCC---ce-E--EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEee-
Q psy11143        106 VRESDAGVYNCVAQNSEG---SA-E--SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSK-  174 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g---~~-~--~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k-  174 (940)
                      ++.+|+|.|.|.+.+..|   .. .  ..+.|.|...  .+|.+...+....+.+|+.++|.|.+.+. |.+ .++|++ 
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  165 (223)
T 1dee_B           86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK  165 (223)
T ss_dssp             CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence            999999999999998753   11 1  2346777632  24555443323346789999999999985 777 999999 


Q ss_pred             CCeecccc---C----ceEEeeeceEEEeeccc--CCCceEEEEEEcCCcceeeee
Q psy11143        175 DEAEFVED---R----NHKIHRTGSLRLYNIGP--QDSGLYRCTASNLLGEDVAEG  221 (940)
Q Consensus       175 ~g~~i~~~---~----~~~~~~~~sL~I~~v~~--~DsG~YtC~a~N~~g~~s~s~  221 (940)
                      +|..+...   .    ...+...+.|.|.....  +|.|.|+|.|.|..+.....+
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             TSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             CCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            88776430   0    01222345688887776  789999999999888765543

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.61  E-value=8e-15  Score=148.57  Aligned_cols=154  Identities=16%  Similarity=0.238  Sum_probs=109.9

Q ss_pred             CCcEEEecCCeEEEEEEeec-cCCCeEEEEEC-CEeec------------CC--CCeEEEeeceEEEEcccccCCCeEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEG-HPLPQMTWFHD-GNSLD------------SD--DHVTYEHDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kd-g~~I~------------~~--~~~~~~~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      ...+.+.+|++|+|.|.+.+ .+.+.|.|+|+ +..+.            ..  .+..+......|.|.+++.+|+|.|+
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~   85 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY   85 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence            35678999999999999854 34679999994 33221            11  34444333445799999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEecccC-CeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeeccccCceEEeeeceE
Q psy11143        116 CVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSL  193 (940)
Q Consensus       116 C~a~n~~g~~~~~~~L~V~~~~~-P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL  193 (940)
                      |.+.+.. .....+.|.|..... |.+..        .++.++|.|.+ .+ |.|.++|++++..+..      ..+.+|
T Consensus        86 C~v~~~~-~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~------~~~~~l  149 (180)
T 2dru_A           86 MRMLHET-EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS------LRQKTM  149 (180)
T ss_dssp             EEEESSS-EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE------ESSSEE
T ss_pred             EEEEcCC-eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC------CCCCEE
Confidence            9998776 444567777765322 33322        34679999999 56 9999999999987751      123355


Q ss_pred             EEeecccCCCceEEEEEEcCCcceeeeeee
Q psy11143        194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYL  223 (940)
Q Consensus       194 ~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L  223 (940)
                      .+..  .+|+|.|+|.|.|..+.......+
T Consensus       150 ~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          150 SYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             EEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEEE--hhcCccEEEEEecCcCccccceeE
Confidence            5532  789999999999999887665544

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.61  E-value=1.5e-14  Score=157.83  Aligned_cols=179  Identities=16%  Similarity=0.297  Sum_probs=124.2

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eecC-----------------CCCceEEeec----CeEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSLD-----------------SDDHVTYEHD----GFVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l~-----------------~~~~~~~~~~----g~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|+.  ..+.                 ...++.+..+    ..+|.|.++
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  108 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL  108 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence            4567889999999999998876  5799999953  2110                 1134444321    246999999


Q ss_pred             ccCCCeEEEEEEEeCC-CCce----eEEEEEEeec--------------cCCeEEEcCCceeecCCCeEEEEEeecCcCC
Q psy11143        291 RESDAGVYNCVAQNSE-GSAE----SVAMIRINGH--------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL  351 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~-Gs~~----~s~~l~V~~~--------------~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~  351 (940)
                      +.+|+|.|.|.+.|.. |...    ..+.|.|...              .++.+...|..+.+.+|++++|.|.+.+.|.
T Consensus       109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  188 (291)
T 2gki_A          109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLF  188 (291)
T ss_dssp             CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCE
T ss_pred             CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccc
Confidence            9999999999999975 2111    2235666541              1344555666778999999999999999887


Q ss_pred             C------eEEEEeCC--ee---ecc---------CCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEE
Q psy11143        352 P------RISWSKDE--AE---FVE---------DRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYL  407 (940)
Q Consensus       352 p------~i~W~k~g--~~---i~~---------~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L  407 (940)
                      +      .+.|+|+.  ..   +..         ..++.+..   ..+|.|.+++.+|+|.|+|.|.|.....-. ...|
T Consensus       189 ~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l  268 (291)
T 2gki_A          189 NSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKL  268 (291)
T ss_dssp             ETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             cccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEEE
Confidence            6      99999962  21   110         34555433   237999999999999999999996543222 3467


Q ss_pred             EEecCCC
Q psy11143        408 TVTGENS  414 (940)
Q Consensus       408 ~V~~~~~  414 (940)
                      .|+....
T Consensus       269 ~v~~~~~  275 (291)
T 2gki_A          269 EIKHHHH  275 (291)
T ss_dssp             EEECC--
T ss_pred             EEEeeEc
Confidence            7777654

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.60  E-value=1.3e-14  Score=151.37  Aligned_cols=167  Identities=16%  Similarity=0.294  Sum_probs=118.0

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Ee---ec--------------CCCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---LD--------------SDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~---I~--------------~~~~~~~~~~----gs~L~I~~  105 (940)
                      +|..+.+.+|++|+|.|.+.+.+  .+.|.|||..  ..   +.              ...++.+..+    ...|.|.+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (220)
T 2fbj_H            6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence            34567899999999999998865  5789999853  11   10              1234444432    24689999


Q ss_pred             cccCCCeEEEEEEEeCCCce---EEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CC--CeEEEeeCCe
Q psy11143        106 VRESDAGVYNCVAQNSEGSA---ESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL--PRISWSKDEA  177 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g~~---~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~--p~ItW~k~g~  177 (940)
                      ++.+|+|.|.|.+.+..+..   ...+.|.|...  .+|.+...+ ...+.+|+.++|.|.+.+. |.  +.|.|++++.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~  164 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK  164 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence            99999999999999875531   12356777643  245665554 4456799999999999885 76  6999999887


Q ss_pred             eccc-cCc------eEEeeeceEEEeecccCCCceEEEEEEcCCccee
Q psy11143        178 EFVE-DRN------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  218 (940)
Q Consensus       178 ~i~~-~~~------~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s  218 (940)
                      .+.. ...      ..+...+.|.|......|.|.|+|.|.|..+...
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          165 DITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            6521 000      1112233588998888999999999999877643

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.60  E-value=1e-14  Score=152.23  Aligned_cols=164  Identities=16%  Similarity=0.289  Sum_probs=119.4

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--ee---c--------------CCCCceEEeec----CeEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---L--------------DSDDHVTYEHD----GFVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~---l--------------~~~~~~~~~~~----g~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +              ....++.+..+    ..+|+|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            3457888999999999998865  5789999853  21   1              01245555532    246999999


Q ss_pred             ccCCCeEEEEEEEeCCCC---ceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CC--CeEEEEeCCee
Q psy11143        291 RESDAGVYNCVAQNSEGS---AESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL--PRISWSKDEAE  362 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~Gs---~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~--p~i~W~k~g~~  362 (940)
                      +.+|+|.|.|.+.|..+.   ......|.|..  ..+|.+...+ ...+..|+.++|.|.+.+. |.  +.|.|++++..
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~  165 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD  165 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence            999999999999997653   12234667753  2456766655 4456789999999999987 76  69999999876


Q ss_pred             ec---------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        363 FV---------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       363 i~---------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      +.         .++.+.  ..+.|.|......|.|.|+|.|.|..|...
T Consensus       166 ~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          166 ITTVNFPPALASGGRYT--MSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CEEEECCCEECSSSCEE--EEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             cceEecCceECCCCCEE--EEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            42         111222  234689998888999999999999998754

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.60  E-value=1.3e-14  Score=156.14  Aligned_cols=168  Identities=22%  Similarity=0.343  Sum_probs=118.7

Q ss_pred             CeeeeCCCeeEEecCCeEEEEEEEeeeC------CCeEEEEEC--CeecC------------CCCceEEeec--CeEEEE
Q psy11143        230 PIFIQRPVSTTYSTGSTSRITCLVEGHP------LPQMTWFHD--GNSLD------------SDDHVTYEHD--GFVLVL  287 (940)
Q Consensus       230 p~~~~~p~~~~v~~G~~v~L~C~v~G~P------~p~ItW~k~--g~~l~------------~~~~~~~~~~--g~sL~I  287 (940)
                      +.+...|....+.+|++++|.|.+.+.|      .+.+.|+|+  +..+.            ...++.+...  ..+|.|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I   85 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI   85 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence            3445567778899999999999999887      679999985  32211            1345554432  236999


Q ss_pred             eeeccCCCeEEEEEEEeCCCCc-eeEEEEEEeecc----------------CCeE-EEcCCceeecCCCeEEEEEeecCc
Q psy11143        288 NGVRESDAGVYNCVAQNSEGSA-ESVAMIRINGHR----------------APRL-VVKPFDMRAPAGSSVEIPCKPDGE  349 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs~-~~s~~l~V~~~~----------------~P~i-~~~p~~~~v~~G~~vtL~C~v~g~  349 (940)
                      .+++.+|+|.|.|.+.|..+.. .....|.|....                +|.+ +..+....+.+|++|+|.|.+.+.
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  165 (264)
T 2gjj_A           86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGY  165 (264)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESS
T ss_pred             CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCC
Confidence            9999999999999999876432 223456665421                1222 233344578999999999999988


Q ss_pred             CC--CeEEEEeCC--e---eec---c-----------CCcEEEee-----eceEEEecCCCCCCeEEEEEEEeC
Q psy11143        350 PL--PRISWSKDE--A---EFV---E-----------DRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       350 P~--p~i~W~k~g--~---~i~---~-----------~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      |.  +.|.|+|+.  .   .+.   .           ..++.+..     ..+|.|.+++.+|+|.|+|.|.|.
T Consensus       166 ~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          166 SFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             CGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            75  799999863  2   121   0           23454432     348999999999999999999995

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.60  E-value=8e-15  Score=153.80  Aligned_cols=171  Identities=15%  Similarity=0.257  Sum_probs=115.5

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC----CeEEEEECC--Eee----c------------CCCCeEEEee----ceEEEEcc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL----PQMTWFHDG--NSL----D------------SDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~----p~V~W~kdg--~~I----~------------~~~~~~~~~~----gs~L~I~~  105 (940)
                      |..+.+.+|++++|.|.+.+.|.    +.|.|+|+.  ..+    .            ...++.+..+    ...|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            55678999999999999998774    799999852  211    0            0123443321    25689999


Q ss_pred             cccCCCeEEEEEEEeCCC------ce-E--EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEE
Q psy11143        106 VRESDAGVYNCVAQNSEG------SA-E--SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISW  172 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g------~~-~--~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW  172 (940)
                      ++.+|+|.|.|.+.+..|      .. .  ..+.|.|...  ..|.+...+....+.+|+.++|.|.+.+. |.+ .|+|
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W  166 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW  166 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence            999999999999998765      11 1  2356777632  24555554444456789999999999985 777 9999


Q ss_pred             eeCCeeccccCc------eEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeee
Q psy11143        173 SKDEAEFVEDRN------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL  223 (940)
Q Consensus       173 ~k~g~~i~~~~~------~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L  223 (940)
                      ++++..+.....      ......+.|.|.++..++ |.|+|.|.|..+.......+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          167 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             GGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             eeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            998765421100      112234568999888866 99999999988876544433

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.60  E-value=5.6e-15  Score=154.97  Aligned_cols=169  Identities=16%  Similarity=0.281  Sum_probs=116.4

Q ss_pred             CCeeEEecCCeEEEEEEEeeeCC----CeEEEEEC--CeecC----------------CCCceEEeec----CeEEEEee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHPL----PQMTWFHD--GNSLD----------------SDDHVTYEHD----GFVLVLNG  289 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P~----p~ItW~k~--g~~l~----------------~~~~~~~~~~----g~sL~I~~  289 (940)
                      |....+.+|++++|.|.+.+.|.    +.+.|+|.  +..+.                ...++.+..+    ..+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            45567889999999999998775    89999985  22210                1234554432    24699999


Q ss_pred             eccCCCeEEEEEEEeCCC------C---ceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEE
Q psy11143        290 VRESDAGVYNCVAQNSEG------S---AESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISW  356 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~G------s---~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W  356 (940)
                      ++.+|+|.|.|.+.|..|      .   ....+.|.|..  ..+|.+...+....+.+|+.++|.|.+.|. |.| .|.|
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W  166 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW  166 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence            999999999999999765      1   11235666653  245666654433456789999999999986 888 9999


Q ss_pred             EeCCeeeccCCc------EEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        357 SKDEAEFVEDRN------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       357 ~k~g~~i~~~~~------~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                      ++++..+.....      -.....+.|.|..+..+| |.|+|.|.|..|......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~  220 (228)
T 3bae_H          167 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDK  220 (228)
T ss_dssp             GGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             eeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEE
Confidence            998865311100      011234578999888866 999999999998765543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.60  E-value=4.1e-15  Score=155.65  Aligned_cols=164  Identities=14%  Similarity=0.260  Sum_probs=116.3

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eec-----------------CCCCceEEeec----CeEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL-----------------DSDDHVTYEHD----GFVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l-----------------~~~~~~~~~~~----g~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|+.  ..+                 ....++.+..+    ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4456789999999999999876  6799999853  211                 01245555432    246999999


Q ss_pred             ccCCCeEEEEEEEeCCC-----C---ceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEe
Q psy11143        291 RESDAGVYNCVAQNSEG-----S---AESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSK  358 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~G-----s---~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k  358 (940)
                      +.+|+|.|.|.+.|..|     .   ....+.|.|..  ..+|.+...+....+..|+.++|.|.+.|. |.| .|.|++
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  166 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  166 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCT
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEec
Confidence            99999999999999865     2   11234666754  234655543322245789999999999987 777 999999


Q ss_pred             CCeeec---------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        359 DEAEFV---------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       359 ~g~~i~---------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      ++..+.         .++.+.  ..+.|.|..+..+| |.|+|.|.|..+...
T Consensus       167 ~~~~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          167 GALTSGVHTFPAVLQSSGLYS--LSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             TSCCTTCEECCCEECTTSCEE--EEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             CCCcCCeEecCceeCCCCCEE--EEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            986531         111221  23468999998888 999999999776543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.59  E-value=4.4e-14  Score=146.48  Aligned_cols=160  Identities=14%  Similarity=0.167  Sum_probs=115.7

Q ss_pred             eeecCCCcEEEEEEeCCCCCC--eEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeee
Q psy11143        148 MRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  225 (940)
Q Consensus       148 ~~v~~Ge~vtL~C~v~g~P~p--~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V  225 (940)
                      +.+..|++++|.|.+ +.|.|  .|.|.+.+..+  ...........|.|.+++.+|+|.|.|.+.|..+.....+.|+|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV   93 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   93 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEE
Confidence            588999999999999 88888  99999965444  11112233457999999999999999999999888888999999


Q ss_pred             cCCCCeeeeCCCeeEEecCCeEEEEEEEeee-CC----CeEEEEECCeecCCCCceE--Ee---------ecC-----eE
Q psy11143        226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PL----PQMTWFHDGNSLDSDDHVT--YE---------HDG-----FV  284 (940)
Q Consensus       226 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~----p~ItW~k~g~~l~~~~~~~--~~---------~~g-----~s  284 (940)
                      ...|......+.  .+..|+.+ |.|.+.+. |.    ++|+|+|++.+|.......  +.         ...     .+
T Consensus        94 ~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~  170 (210)
T 1gsm_A           94 YAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTER  170 (210)
T ss_dssp             EBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEE
T ss_pred             EecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEE
Confidence            954444443432  66778888 99999985 64    4899999999996442111  10         011     11


Q ss_pred             EEEeeeccCCCeEEEEEEEeCCCCceeEE
Q psy11143        285 LVLNGVRESDAGVYNCVAQNSEGSAESVA  313 (940)
Q Consensus       285 L~I~~v~~~DsG~YtC~A~N~~Gs~~~s~  313 (940)
                      |.+.....++.+.|+|+|.+..-......
T Consensus       171 ~~~~~~~~D~~~~~tC~a~~~L~~~~~~~  199 (210)
T 1gsm_A          171 WRLPPLGTPVPPALYCQATMRLPGLELSH  199 (210)
T ss_dssp             EECCCCCSSCCSEEEEEEEEEETTEEEEE
T ss_pred             EeecCCcccCCceEEEEEEeeCCCCcccc
Confidence            33335566777899999999875554433

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.59  E-value=1.5e-13  Score=144.21  Aligned_cols=240  Identities=17%  Similarity=0.272  Sum_probs=165.8

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeec-cC---CCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEG-HP---LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g-~P---~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+...|+...+..|+.++|+|.+.| .|   +.+|+|+|||..+...        ...|.|..+...|+|.|+|.+.+..
T Consensus         4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa--------T~tLti~s~t~sdSG~YqCvVTDa~   75 (304)
T 3shs_A            4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------TATLTVADATSENAGSYKVTVQDTD   75 (304)
T ss_dssp             EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC--------SSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC--------cceEEeeeccccCCeEEEEEEEECC
Confidence            3455577777899999999999865 56   4489999999887632        2356899999999999999999988


Q ss_pred             CceEEEEEEEEecccCCeeEe-cCCceeecCCCcEEEEEEe--CC-CC-----CCeEEEeeCCeeccccCceEEeeeceE
Q psy11143        123 GSAESVAMIRINGHRAPRLVV-KPFDMRAPAGSSVEIPCKP--DG-EP-----LPRISWSKDEAEFVEDRNHKIHRTGSL  193 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~P~~~~-~p~~~~v~~Ge~vtL~C~v--~g-~P-----~p~ItW~k~g~~i~~~~~~~~~~~~sL  193 (940)
                      |.......+.|.....+.+.+ .|....+..|..+.|.+.+  .| .|     ..+++|++++..+...        ..|
T Consensus        76 Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA--------q~l  147 (304)
T 3shs_A           76 TMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT--------QDI  147 (304)
T ss_dssp             TCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS--------SEE
T ss_pred             CCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc--------ccc
Confidence            877765556665543333333 3555667778999999988  53 44     4699999999876432        246


Q ss_pred             EEeecccCCCceEEEEEEcCCcc--eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEe--------eeCCC--eE
Q psy11143        194 RLYNIGPQDSGLYRCTASNLLGE--DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE--------GHPLP--QM  261 (940)
Q Consensus       194 ~I~~v~~~DsG~YtC~a~N~~g~--~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~--------G~P~p--~I  261 (940)
                      .+...+..++|.|+|.+.|..+.  .+.++.+.+. .-..-........+..|+.+.|...+.        |.|.-  ++
T Consensus       148 T~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (304)
T 3shs_A          148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA-TMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY  226 (304)
T ss_dssp             EECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEEC-EEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEE
T ss_pred             ceeeEEecCCeEEEEEEEcCCCCcccccceEEEEE-ccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEE
Confidence            67778889999999999998764  3444444443 111222234456778899999887653        22222  56


Q ss_pred             EEEEC--CeecC---------CCCceEEeecCeEEEEeeeccCCCeEEEEEEEe
Q psy11143        262 TWFHD--GNSLD---------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN  304 (940)
Q Consensus       262 tW~k~--g~~l~---------~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N  304 (940)
                      .||..  |..-+         .-..+.+..+|. |.-....-+|...|.|++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  279 (304)
T 3shs_A          227 NWYLQREGQLSPTLIGSEVGEALEGFSITPDGH-LFKESATYDDTAKFWCVAKL  279 (304)
T ss_dssp             EEEEECTTCCSCEEEESSSEECGGGEEECTTSC-EEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEeecCccCchhhhhhhhhhhccceeCCCcc-eeecccccccchheeeHHHH
Confidence            68853  32111         112355666666 66667778899999999864

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.59  E-value=3.1e-13  Score=166.51  Aligned_cols=395  Identities=11%  Similarity=0.129  Sum_probs=228.2

Q ss_pred             cEEEECCCCCCC-CeEEEEEEEcCCceEEEE-EEEEE---eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEE-EE-
Q psy11143          8 TELVISGVQREH-GGRYSCVAGNPAGVYRGD-LHVTV---NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT-WF-   80 (940)
Q Consensus         8 ~tL~I~~v~~sD-sG~Y~C~a~n~~g~~~~~-v~l~V---~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~-W~-   80 (940)
                      ..|.|..+...+ ++.|+|.+.+..|..... +.+.+   ..+|.+. .+.++.+.+|+.++|.|.+.|.|.|.|. |+ 
T Consensus       123 ~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~  201 (731)
T 2v5y_A          123 AELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ  201 (731)
T ss_dssp             EEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEE
T ss_pred             EEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEe
Confidence            457777663343 589999888888865432 22322   2567776 6778999999999999999999999888 88 


Q ss_pred             -ECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCc-eEEEEEEEEecccCCeeEecCCceeecCCCcE
Q psy11143         81 -HDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGS-AESVAMIRINGHRAPRLVVKPFDMRAPAGSSV  156 (940)
Q Consensus        81 -kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~-~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~v  156 (940)
                       ++|..+.......+.  .....|.|.++...|+|.|+|.|.|..|. ....+.|.|...+.  ....+. ........+
T Consensus       202 ~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~--~~~~p~-~~~~~~~~v  278 (731)
T 2v5y_A          202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV--PIAPPQ-LASVGATYL  278 (731)
T ss_dssp             ESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCC--BSSCCE-EEEECSSCE
T ss_pred             cCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCC--CCCCcc-eeccCCceE
Confidence             678776532211111  11356899999999999999999999997 45567777765432  222222 222345678


Q ss_pred             EEEEEeCC----CCCC--eEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEE--cCCcceeeeeeeeecCC
Q psy11143        157 EIPCKPDG----EPLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS--NLLGEDVAEGYLTVTGA  228 (940)
Q Consensus       157 tL~C~v~g----~P~p--~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~--N~~g~~s~s~~L~V~~~  228 (940)
                      .|.|....    .|..  .|.|...+....   .........+.|.++.+.+...|+|.|.  |..|....+..+.+...
T Consensus       279 ~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~  355 (731)
T 2v5y_A          279 WIQLNANSINGDGPIVAREVEYCTASGSWN---DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTK  355 (731)
T ss_dssp             EEECCCSSBSSCSCCCEEEEEEEESSSSCE---EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECC
T ss_pred             EEEeCCcccCCCCccEEEEEEEEECCCCce---EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeec
Confidence            99998642    2222  466765432111   1112234578999999988889999999  98887654444444321


Q ss_pred             CCeeeeCCCeeEE--ecCCeEEEEEEEeeeC-------CCeEEEEECCeecCCCC---ceEEeecCeEEEEeeeccCCCe
Q psy11143        229 PPIFIQRPVSTTY--STGSTSRITCLVEGHP-------LPQMTWFHDGNSLDSDD---HVTYEHDGFVLVLNGVRESDAG  296 (940)
Q Consensus       229 ~p~~~~~p~~~~v--~~G~~v~L~C~v~G~P-------~p~ItW~k~g~~l~~~~---~~~~~~~g~sL~I~~v~~~DsG  296 (940)
                      .......|....+  .....+.|........       .-.|.|...+.......   ..........+.|.++......
T Consensus       356 ~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  435 (731)
T 2v5y_A          356 CADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNV  435 (731)
T ss_dssp             CCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEE
T ss_pred             CCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEE
Confidence            1111122333322  2345677776653211       01344543321000000   0011123345889999988888


Q ss_pred             EEEEEEEeCCCCceeEEEEEEeec-cCCeEEEcCCceeec-CCCeEEEEEeecCcC---CC--eEEEEeCCee---ecc-
Q psy11143        297 VYNCVAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAP-AGSSVEIPCKPDGEP---LP--RISWSKDEAE---FVE-  365 (940)
Q Consensus       297 ~YtC~A~N~~Gs~~~s~~l~V~~~-~~P~i~~~p~~~~v~-~G~~vtL~C~v~g~P---~p--~i~W~k~g~~---i~~-  365 (940)
                      .|+..|.|..|... +..+.+.-. .+|... .+..+... ....+.|.......+   .-  .|.|...+..   +.. 
T Consensus       436 ~~~V~A~n~~G~s~-S~~~~~~T~~~~P~~p-~~~~~~~~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~  513 (731)
T 2v5y_A          436 SVKLILMNPEGRKE-SQELIVQTDEDLPGAV-PTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLS  513 (731)
T ss_dssp             EEEEEEECSSCEEE-CCCEEEECCCCCCCCC-CTTTCEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCC
T ss_pred             EEEEEEEcCCCCCC-CceEEEEccCCCCCCC-CcceEEeeecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCcccccc
Confidence            88999999998764 334444321 112110 00112221 245788877643222   12  3444332211   000 


Q ss_pred             CCcEEEe---eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        366 DRNHKIH---RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       366 ~~~~~i~---~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      .....+.   ...++.|.++.......++..|.|..|....+. +.+...
T Consensus       514 ~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T~  562 (731)
T 2v5y_A          514 NQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTK  562 (731)
T ss_dssp             CCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEECC
T ss_pred             CcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEEcC
Confidence            1111111   123688899988888888999999999877763 555544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.59  E-value=1.5e-14  Score=155.50  Aligned_cols=169  Identities=21%  Similarity=0.350  Sum_probs=117.7

Q ss_pred             CCeeeeCCCeeEEecCCeEEEEEEEeeeC-----CCeEEEEECC--eec---C---------CCCceEEeec--CeEEEE
Q psy11143        229 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDG--NSL---D---------SDDHVTYEHD--GFVLVL  287 (940)
Q Consensus       229 ~p~~~~~p~~~~v~~G~~v~L~C~v~G~P-----~p~ItW~k~g--~~l---~---------~~~~~~~~~~--g~sL~I  287 (940)
                      .+.+...|....+.+|++++|.|.+.+.+     .+.+.|+|+.  ..+   .         ...++.+...  ..+|+|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            44555667778899999999999998887     5799999853  211   0         1345554432  236999


Q ss_pred             eeeccCCCeEEEEEEEeCCCCc-eeEEEEEEeecc-------CC--------------eEEEcCCceeecCCCeEEEEEe
Q psy11143        288 NGVRESDAGVYNCVAQNSEGSA-ESVAMIRINGHR-------AP--------------RLVVKPFDMRAPAGSSVEIPCK  345 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs~-~~s~~l~V~~~~-------~P--------------~i~~~p~~~~v~~G~~vtL~C~  345 (940)
                      .+++.+|+|.|+|.+.|..+.. .....|.|....       +|              ..+..+....+.+|++++|.|.
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~  174 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV  174 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence            9999999999999999875432 123445554321       12              1233455678999999999999


Q ss_pred             ecCcCC--CeEEEEeC--Cee---e----------------ccCCcEEEee-----eceEEEecCCCCCCeEEEEEEEeC
Q psy11143        346 PDGEPL--PRISWSKD--EAE---F----------------VEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       346 v~g~P~--p~i~W~k~--g~~---i----------------~~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      +.+.|.  +.+.|+|+  +..   +                ....++.+..     ..+|.|.+++.+|+|.|+|.|.|.
T Consensus       175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            998864  79999985  221   1                0234666543     247999999999999999999985

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.58  E-value=7.2e-14  Score=144.85  Aligned_cols=156  Identities=19%  Similarity=0.235  Sum_probs=114.8

Q ss_pred             eEEecCCeEEEEEEEeeeCCC--eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEE
Q psy11143        239 TTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  316 (940)
Q Consensus       239 ~~v~~G~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~  316 (940)
                      ..+..|++++|.|.+ +.|.|  .|.|++.+..+   .+......+..|.|.+++.+|+|.|.|.|.|..+.....+.|.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~lt   92 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL   92 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEE
Confidence            588899999999999 98888  99999965544   3344444556799999999999999999999988777777777


Q ss_pred             EeeccCCeEE-EcCCceeecCCCeEEEEEeecCc-CC----CeEEEEeCCeeeccCCc----E-------------EEee
Q psy11143        317 INGHRAPRLV-VKPFDMRAPAGSSVEIPCKPDGE-PL----PRISWSKDEAEFVEDRN----H-------------KIHR  373 (940)
Q Consensus       317 V~~~~~P~i~-~~p~~~~v~~G~~vtL~C~v~g~-P~----p~i~W~k~g~~i~~~~~----~-------------~i~~  373 (940)
                      |.  .+|... +.+.  ....|+.+ |.|.+.|. |.    ++|.|+|++.++.....    .             .+.-
T Consensus        93 V~--~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v  167 (210)
T 1gsm_A           93 VY--AFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRV  167 (210)
T ss_dssp             EE--BCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEE
T ss_pred             EE--ecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEE
Confidence            76  456443 3343  66678888 99999985 74    48999999998853311    1             1111


Q ss_pred             eceEEEecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143        374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVA  403 (940)
Q Consensus       374 ~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~  403 (940)
                      +++|.+.....++.+.|+|.|.+..-....
T Consensus       168 ts~~~~~~~~~D~~~~~tC~a~~~L~~~~~  197 (210)
T 1gsm_A          168 TERWRLPPLGTPVPPALYCQATMRLPGLEL  197 (210)
T ss_dssp             EEEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred             EEEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence            234555566667778999999996544333

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.58  E-value=1.9e-14  Score=151.59  Aligned_cols=176  Identities=21%  Similarity=0.288  Sum_probs=116.5

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eecC----------------CCCceEEeec----CeEEEEeeec
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSLD----------------SDDHVTYEHD----GFVLVLNGVR  291 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l~----------------~~~~~~~~~~----g~sL~I~~v~  291 (940)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ..+.                ...++.+..+    ..+|+|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            3456788999999999998865  5789999852  2110                1245555432    2369999999


Q ss_pred             cCCCeEEEEEEEeCC--CC----ceeEEEEEEee--ccCCeEEEcCCceeecCC-CeEEEEEeecCc-CCC-eEEEEe-C
Q psy11143        292 ESDAGVYNCVAQNSE--GS----AESVAMIRING--HRAPRLVVKPFDMRAPAG-SSVEIPCKPDGE-PLP-RISWSK-D  359 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~--Gs----~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G-~~vtL~C~v~g~-P~p-~i~W~k-~  359 (940)
                      .+|+|.|.|.+.+..  +.    ......|.|..  ..+|.+........+..| +.++|.|.+.|. |.| .|.|++ +
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~  166 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKN  166 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence            999999999998422  11    11234677754  234655532222234578 999999999986 877 999999 8


Q ss_pred             CeeeccC---Cc----EEEeeeceEEEecCCC--CCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        360 EAEFVED---RN----HKIHRTGSLRLYNIGP--QDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       360 g~~i~~~---~~----~~i~~~~sL~I~~v~~--~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      |..+...   ..    -.....++|.|.....  +|.|.|+|.|.|..|.......+.|+.
T Consensus       167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~  227 (232)
T 1dn0_B          167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA  227 (232)
T ss_dssp             SCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred             CCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence            8776430   00    1112245788988886  789999999999999877776666554

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.58  E-value=1.4e-14  Score=153.10  Aligned_cols=172  Identities=16%  Similarity=0.264  Sum_probs=119.1

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE--------------CCEeecCC----CCeEEEee---ceEEEEc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH--------------DGNSLDSD----DHVTYEHD---GFVLVLN  104 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k--------------dg~~I~~~----~~~~~~~~---gs~L~I~  104 (940)
                      +.+...|..+.+.+|++++|.| ..+.+.+.|.|+|              ++..+...    .++.+...   ...|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            4556677888999999999999 6677888999998              22222111    34444422   3468999


Q ss_pred             ccccCCCeEEEEEEEeCC----CceEEEEEEEEecc----cCCeeE-ecCCceeecCCCcEEEEEEeCC-CCCC-eEEEe
Q psy11143        105 GVRESDAGVYNCVAQNSE----GSAESVAMIRINGH----RAPRLV-VKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWS  173 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~----g~~~~~~~L~V~~~----~~P~~~-~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~  173 (940)
                      +++.+|+|.|+|.+.+..    ......+.|.|...    ..|.+. ..+....+.+|+.++|.|.+.+ .|.+ .++|+
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            999999999999999632    12222455666531    245444 3444555667999999999988 5555 89999


Q ss_pred             eCCeeccccCc--------------eEEeeeceEEEeecccCC-CceEEEEEEcCCccee
Q psy11143        174 KDEAEFVEDRN--------------HKIHRTGSLRLYNIGPQD-SGLYRCTASNLLGEDV  218 (940)
Q Consensus       174 k~g~~i~~~~~--------------~~~~~~~sL~I~~v~~~D-sG~YtC~a~N~~g~~s  218 (940)
                      ++|..+.....              ..+.....|.|.....+| .|.|+|.|.|......
T Consensus       162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            99988764211              112223458888888888 9999999998655433

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=155.31  Aligned_cols=170  Identities=21%  Similarity=0.353  Sum_probs=116.5

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccC-----CCeEEEEECC--Ee---ec---------CCCCeEEEe--eceEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDG--NS---LD---------SDDHVTYEH--DGFVLV  102 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P-----~p~V~W~kdg--~~---I~---------~~~~~~~~~--~gs~L~  102 (940)
                      ..+.+...|..+.+.+|++++|.|.+.+.+     .+.|.|+|+.  ..   +.         ...++....  ....|.
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            345667778888999999999999998876     4799999853  21   11         123444432  234689


Q ss_pred             EcccccCCCeEEEEEEEeCCCceE-EEEEEEEecccC-------C--------------eeEecCCceeecCCCcEEEEE
Q psy11143        103 LNGVRESDAGVYNCVAQNSEGSAE-SVAMIRINGHRA-------P--------------RLVVKPFDMRAPAGSSVEIPC  160 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g~~~-~~~~L~V~~~~~-------P--------------~~~~~p~~~~v~~Ge~vtL~C  160 (940)
                      |.+++.+|+|.|+|.+.|..+... ..+.|.|...+.       |              .....+....+.+|++++|.|
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C  173 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC  173 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence            999999999999999998754322 234555554211       1              123345567899999999999


Q ss_pred             EeCCCCC--CeEEEeeC--Ceecc-------------------ccCceEEee-----eceEEEeecccCCCceEEEEEEc
Q psy11143        161 KPDGEPL--PRISWSKD--EAEFV-------------------EDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASN  212 (940)
Q Consensus       161 ~v~g~P~--p~ItW~k~--g~~i~-------------------~~~~~~~~~-----~~sL~I~~v~~~DsG~YtC~a~N  212 (940)
                      .+.+.+.  +.+.|+++  +..+.                   ...++.+..     ..+|.|.+++.+|+|.|+|.+.+
T Consensus       174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~  253 (268)
T 1x9q_A          174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGAS  253 (268)
T ss_dssp             EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            9998763  78999984  22210                   123444432     24799999999999999999987


Q ss_pred             C
Q psy11143        213 L  213 (940)
Q Consensus       213 ~  213 (940)
                      .
T Consensus       254 ~  254 (268)
T 1x9q_A          254 Y  254 (268)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.57  E-value=1.1e-14  Score=134.69  Aligned_cols=93  Identities=29%  Similarity=0.485  Sum_probs=84.4

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .||.|...|.++.+.+|++++|.|.+.|.|.|.|+|+|+|..+..+.++.+..++   +|.|.++..+|+|.|+|.|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            5788999999999999999999999999999999999999999888888776544   7999999999999999999999


Q ss_pred             CeeEEEEEEEEEecCC
Q psy11143        398 LGEDVAEGYLTVTGEN  413 (940)
Q Consensus       398 ~G~~~~s~~L~V~~~~  413 (940)
                      .|..+.++.|.|..+|
T Consensus        92 ~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           92 AGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TEEEEEEEEEEEEC--
T ss_pred             CCEEEEEEEEEEEcCC
Confidence            9999999999998764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.57  E-value=2.8e-14  Score=151.13  Aligned_cols=177  Identities=15%  Similarity=0.271  Sum_probs=119.1

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--Ee---ec--------------CCCCeEEEe----eceEE
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NS---LD--------------SDDHVTYEH----DGFVL  101 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~~---I~--------------~~~~~~~~~----~gs~L  101 (940)
                      .+...|..+.+.+|++|+|.|.+.+.  +.+.|.|+|+.  ..   +.              ...++.+..    ....|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            45556788899999999999999875  56799999843  21   10              123444442    23568


Q ss_pred             EEcccccCCCeEEEEEEEeCCC-c----eE--EEEEEEEeccc-----CCeeEe-cCCceeecCCCcEEEEEEeCCC-CC
Q psy11143        102 VLNGVRESDAGVYNCVAQNSEG-S----AE--SVAMIRINGHR-----APRLVV-KPFDMRAPAGSSVEIPCKPDGE-PL  167 (940)
Q Consensus       102 ~I~~v~~~DsG~YtC~a~n~~g-~----~~--~~~~L~V~~~~-----~P~~~~-~p~~~~v~~Ge~vtL~C~v~g~-P~  167 (940)
                      .|.+++.+|+|.|.|.+.+... .    ..  ..+.|.|...+     +|...+ .+....+.+|+.++|.|.+.+. |.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            9999999999999999998631 1    11  13567776532     122222 2444456789999999999985 64


Q ss_pred             -CeEEEeeCCe-eccccC--ce-----EEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeee
Q psy11143        168 -PRISWSKDEA-EFVEDR--NH-----KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  225 (940)
Q Consensus       168 -p~ItW~k~g~-~i~~~~--~~-----~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V  225 (940)
                       +.|+|++++. .+....  ..     .....+.|.|.++.. + |.|+|.|.|..+.......+.+
T Consensus       163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence             6999999886 453221  00     112234688887765 4 9999999998887655555544

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.57  E-value=2e-14  Score=151.93  Aligned_cols=169  Identities=16%  Similarity=0.248  Sum_probs=117.5

Q ss_pred             eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEE--------------CCeecCC----CCceEEeec---CeEEEEee
Q psy11143        231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH--------------DGNSLDS----DDHVTYEHD---GFVLVLNG  289 (940)
Q Consensus       231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k--------------~g~~l~~----~~~~~~~~~---g~sL~I~~  289 (940)
                      .+...+....+.+|++++|.| ..+.+.+.+.|+|              ++.....    ..++.+...   ..+|.|.+
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   82 (245)
T 4ei6_B            4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQP   82 (245)
T ss_dssp             CCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECS
T ss_pred             ceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECC
Confidence            345567778899999999999 6778889999998              2221111    145555432   23699999


Q ss_pred             eccCCCeEEEEEEEeCC----CCceeEEEEEEee----ccCCeEE-EcCCceeecCCCeEEEEEeecC-cCCC-eEEEEe
Q psy11143        290 VRESDAGVYNCVAQNSE----GSAESVAMIRING----HRAPRLV-VKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSK  358 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~----Gs~~~s~~l~V~~----~~~P~i~-~~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k  358 (940)
                      ++.+|+|.|+|.+.+..    ........+.|..    ..+|.+. ..+....+.+|+.++|.|.+.| .|.+ .|.|++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~  162 (245)
T 4ei6_B           83 TALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  162 (245)
T ss_dssp             CCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEE
Confidence            99999999999999642    2222334566653    2456554 3444455667999999999998 4555 899999


Q ss_pred             CCeeeccCCcE--------------EEeeeceEEEecCCCCC-CeEEEEEEEeCCee
Q psy11143        359 DEAEFVEDRNH--------------KIHRTGSLRLYNIGPQD-SGLYRCTASNLLGE  400 (940)
Q Consensus       359 ~g~~i~~~~~~--------------~i~~~~sL~I~~v~~~D-~G~YtC~A~N~~G~  400 (940)
                      +|..+......              .....+.|.|.....+| .|.|+|.|.|....
T Consensus       163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          163 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             TTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            99887643211              11123458888888888 99999999996543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.57  E-value=2.1e-14  Score=151.38  Aligned_cols=170  Identities=14%  Similarity=0.231  Sum_probs=117.2

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--------------CEeec---CCCCeEEEe---eceEEEEccc
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--------------GNSLD---SDDHVTYEH---DGFVLVLNGV  106 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--------------g~~I~---~~~~~~~~~---~gs~L~I~~v  106 (940)
                      .+...|..+.+.+|++|+|.|.+.+ +.+.|.|||.              +....   ...++.+..   ....|.|.++
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            4556677889999999999999976 7779999982              21111   113444432   2346899999


Q ss_pred             ccCCCeEEEEEEEeCCC---ceEEEEEEEEec----ccCCeeEe-cCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCC
Q psy11143        107 RESDAGVYNCVAQNSEG---SAESVAMIRING----HRAPRLVV-KPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDE  176 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~g---~~~~~~~L~V~~----~~~P~~~~-~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g  176 (940)
                      +.+|+|.|+|.+.+..+   .....+.|.|..    ...|.+.+ .+....+.+|+.++|.|.+.+ .|.+ .++|+++|
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g  162 (240)
T 3q5y_A           83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  162 (240)
T ss_dssp             CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence            99999999999984322   112244566653    13455543 344456667999999999998 6666 79999999


Q ss_pred             eeccccCce----------EEeeeceEEEeecccCC-CceEEEEEEcCCcce
Q psy11143        177 AEFVEDRNH----------KIHRTGSLRLYNIGPQD-SGLYRCTASNLLGED  217 (940)
Q Consensus       177 ~~i~~~~~~----------~~~~~~sL~I~~v~~~D-sG~YtC~a~N~~g~~  217 (940)
                      ..+......          .+...+.|.|..+..+| .|.|+|.|.|.....
T Consensus       163 ~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          163 KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            887543221          11223358899998888 669999999875543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.57  E-value=1.7e-14  Score=154.85  Aligned_cols=171  Identities=15%  Similarity=0.225  Sum_probs=118.3

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe------------ecCC----CCeEEEe---eceEEEEc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS------------LDSD----DHVTYEH---DGFVLVLN  104 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~------------I~~~----~~~~~~~---~gs~L~I~  104 (940)
                      +.+...|..+.+.+|++|+|.|.+. .+.+.|.|||.  +..            ....    .++.+..   ....|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            4556677888999999999999987 57789999982  211            1111    3444442   24568999


Q ss_pred             ccccCCCeEEEEEEEeCC--CceEEEEEEEEecc----cCCeeEe-cCCceeecCCCcEEEEEEeCCCCC-C-eEEEeeC
Q psy11143        105 GVRESDAGVYNCVAQNSE--GSAESVAMIRINGH----RAPRLVV-KPFDMRAPAGSSVEIPCKPDGEPL-P-RISWSKD  175 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~--g~~~~~~~L~V~~~----~~P~~~~-~p~~~~v~~Ge~vtL~C~v~g~P~-p-~ItW~k~  175 (940)
                      +++.+|+|.|+|.+.+..  ........|.|...    ..|.+.+ .+....+.+|+.++|.|.+.+.++ + .++|+++
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~  185 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  185 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEEC
Confidence            999999999999999742  22222445666541    2354443 444556667999999999998554 4 8999999


Q ss_pred             CeeccccC--------------ceEEeeeceEEEeecccCC-CceEEEEEEcCCcce
Q psy11143        176 EAEFVEDR--------------NHKIHRTGSLRLYNIGPQD-SGLYRCTASNLLGED  217 (940)
Q Consensus       176 g~~i~~~~--------------~~~~~~~~sL~I~~v~~~D-sG~YtC~a~N~~g~~  217 (940)
                      |..+....              ...+.....|.|.....+| .|.|+|.|.|.....
T Consensus       186 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          186 GKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             SSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             CEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            98875421              1112223467888887777 999999999875543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.57  E-value=2.1e-14  Score=154.04  Aligned_cols=171  Identities=19%  Similarity=0.271  Sum_probs=116.9

Q ss_pred             CeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEee--CCeecc------------c----cCceEEee----eceEEEe
Q psy11143        139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK--DEAEFV------------E----DRNHKIHR----TGSLRLY  196 (940)
Q Consensus       139 P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k--~g~~i~------------~----~~~~~~~~----~~sL~I~  196 (940)
                      +.+...+..+.+.+|++++|.|.+. .+.+.+.|+|  .+....            .    ..++.+..    +.+|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            3455566778899999999999987 5778999998  222110            0    03444443    4579999


Q ss_pred             ecccCCCceEEEEEEcC--CcceeeeeeeeecC-----CCCeee-eCCCeeEEecCCeEEEEEEEeeeCCC--eEEEEEC
Q psy11143        197 NIGPQDSGLYRCTASNL--LGEDVAEGYLTVTG-----APPIFI-QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD  266 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~--~g~~s~s~~L~V~~-----~~p~~~-~~p~~~~v~~G~~v~L~C~v~G~P~p--~ItW~k~  266 (940)
                      +++.+|+|.|+|.+.+.  .........|.|..     .+|.+. ..+....+..|+.++|.|.+.|.+++  .|+|+++
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~  185 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  185 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEEC
Confidence            99999999999999974  22333444566653     134333 34444556679999999999996654  8999999


Q ss_pred             CeecCCCCceEE--------eecC-----eEEEEeeeccCC-CeEEEEEEEeCCCCce
Q psy11143        267 GNSLDSDDHVTY--------EHDG-----FVLVLNGVRESD-AGVYNCVAQNSEGSAE  310 (940)
Q Consensus       267 g~~l~~~~~~~~--------~~~g-----~sL~I~~v~~~D-sG~YtC~A~N~~Gs~~  310 (940)
                      |..+........        ..++     ..|.|.....+| .|.|+|.|.|......
T Consensus       186 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~  243 (268)
T 3pl6_D          186 GKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  243 (268)
T ss_dssp             SSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             CEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCC
Confidence            998864321110        0111     236777777777 9999999999865543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.57  E-value=5.2e-15  Score=155.90  Aligned_cols=167  Identities=14%  Similarity=0.153  Sum_probs=113.9

Q ss_pred             eCCCeeEEecCCeEEEEEEEeee-CC-C-eEEEEECCeec-CCCCceE-EeecC-----eEEEEeeeccCCCeEEEEEEE
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGH-PL-P-QMTWFHDGNSL-DSDDHVT-YEHDG-----FVLVLNGVRESDAGVYNCVAQ  303 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~-P~-p-~ItW~k~g~~l-~~~~~~~-~~~~g-----~sL~I~~v~~~DsG~YtC~A~  303 (940)
                      ..|....+..|+.++|.|.+.|. |. | .|+|+++|..+ ....... ...++     ..|.|.++..+|.|.|+|.|.
T Consensus        18 ~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~   97 (231)
T 2w59_A           18 IPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQ   97 (231)
T ss_dssp             ECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             eCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEE
Confidence            45556667899999999999995 64 5 99999999877 3322211 11222     249999999999999999999


Q ss_pred             eCCCCceeEEEEEEe--eccCCeEEEcCCceeecCCCeEEEEEeecCc-C-CCeEEEEeCCeeeccCCcE----EE----
Q psy11143        304 NSEGSAESVAMIRIN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-P-LPRISWSKDEAEFVEDRNH----KI----  371 (940)
Q Consensus       304 N~~Gs~~~s~~l~V~--~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P-~p~i~W~k~g~~i~~~~~~----~i----  371 (940)
                      |..+.......+.+.  ...+|.+.+.+.......+..++|.|.+.|. | .+.|+|+|+|..+......    ..    
T Consensus        98 ~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~  177 (231)
T 2w59_A           98 HEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERT  177 (231)
T ss_dssp             CTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTT
T ss_pred             cCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCccc
Confidence            988654333333221  1246766543322112235579999999986 4 3699999999887544211    11    


Q ss_pred             -----------eeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        372 -----------HRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       372 -----------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                                 ...+.|.|.....+|.|.|+|.|.|....
T Consensus       178 ~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          178 ANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             SCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             ccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence                       11235778888778899999999997654

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.56  E-value=2.8e-14  Score=150.37  Aligned_cols=168  Identities=14%  Similarity=0.210  Sum_probs=116.6

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC--------------Ceec---CCCCceEEeec---CeEEEEeeec
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--------------GNSL---DSDDHVTYEHD---GFVLVLNGVR  291 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~--------------g~~l---~~~~~~~~~~~---g~sL~I~~v~  291 (940)
                      +...+....+.+|++++|.|.+.+ +.+.|.|+|.              +...   ....++.+..+   ..+|.|.+++
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   83 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   83 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence            445567788999999999999876 7789999982              1111   11234544432   3469999999


Q ss_pred             cCCCeEEEEEEEeCCC---CceeEEEEEEee----ccCCeEEE-cCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCe
Q psy11143        292 ESDAGVYNCVAQNSEG---SAESVAMIRING----HRAPRLVV-KPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEA  361 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~G---s~~~s~~l~V~~----~~~P~i~~-~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~  361 (940)
                      .+|+|.|+|.+.+..+   .......+.|..    ..+|.+.. .+....+..|+.++|.|.+.| .|.| .+.|+++|.
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~  163 (240)
T 3q5y_A           84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGK  163 (240)
T ss_dssp             GGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             hhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCE
Confidence            9999999999984322   222334566652    24566554 444445667999999999998 6666 899999999


Q ss_pred             eeccCCcE----EEe------eeceEEEecCCCCC-CeEEEEEEEeCCee
Q psy11143        362 EFVEDRNH----KIH------RTGSLRLYNIGPQD-SGLYRCTASNLLGE  400 (940)
Q Consensus       362 ~i~~~~~~----~i~------~~~sL~I~~v~~~D-~G~YtC~A~N~~G~  400 (940)
                      .+......    ...      ..+.|.|.....+| .|.|+|.|.|....
T Consensus       164 ~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          164 EVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             EECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            87643221    111      22358899888888 77999999997553

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.56  E-value=6.1e-14  Score=145.95  Aligned_cols=163  Identities=15%  Similarity=0.329  Sum_probs=115.7

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eec------C-------------CCCceEEeecC----eEEEEe
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL------D-------------SDDHVTYEHDG----FVLVLN  288 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l------~-------------~~~~~~~~~~g----~sL~I~  288 (940)
                      +....+.+|++++|.|.+.+.+  .+.+.|++..  ...      .             ...++.+..++    .+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN   86 (221)
T ss_dssp             ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence            4456788999999999998743  6799999742  111      0             12345554332    359999


Q ss_pred             eeccCCCeEEEEEEEeCC--CCceeEEEEEEe--eccCCeEE-EcCCceeecCCCeEEEEEeecC-cCC-C-eEEEEeCC
Q psy11143        289 GVRESDAGVYNCVAQNSE--GSAESVAMIRIN--GHRAPRLV-VKPFDMRAPAGSSVEIPCKPDG-EPL-P-RISWSKDE  360 (940)
Q Consensus       289 ~v~~~DsG~YtC~A~N~~--Gs~~~s~~l~V~--~~~~P~i~-~~p~~~~v~~G~~vtL~C~v~g-~P~-p-~i~W~k~g  360 (940)
                      +++.+|+|.|.|.+.+..  ........+.|.  ...+|.+. ..+...  .+|+.++|.|.+.+ .|. + .|.|+++|
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g  164 (221)
T 3m8o_H           87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESG  164 (221)
T ss_dssp             SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCS
T ss_pred             CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECC
Confidence            999999999999999874  222333456664  23456665 333333  78999999999998 776 4 99999998


Q ss_pred             eeec----------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        361 AEFV----------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       361 ~~i~----------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      ..+.          .+..+.+  .+.|.|.....+|.|.|+|.|.|..|...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          165 QGVTARNFPPSQDASGDLYTT--SSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             TTCEEEECCCEECSSSSCEEE--EEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EECceEEcCceeeCCCCcEEE--EEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            7652          2233332  34699999999999999999999887543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.56  E-value=6.4e-14  Score=152.89  Aligned_cols=165  Identities=16%  Similarity=0.298  Sum_probs=115.2

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Ee---ec--------------CCCCeEEEe----eceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---LD--------------SDDHVTYEH----DGFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~---I~--------------~~~~~~~~~----~gs~L~I~  104 (940)
                      .+|..+.+.+|++++|.|.+.+.|  .+.|.|+|+.  ..   +.              ...++.+..    ....|.|.
T Consensus        27 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  106 (291)
T 2gki_A           27 QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELS  106 (291)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEEC
T ss_pred             EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEEC
Confidence            346678899999999999998876  5789999853  11   10              012333332    13468999


Q ss_pred             ccccCCCeEEEEEEEeCC-CceE----EEEEEEEecc--------------cCCeeEecCCceeecCCCcEEEEEEeCCC
Q psy11143        105 GVRESDAGVYNCVAQNSE-GSAE----SVAMIRINGH--------------RAPRLVVKPFDMRAPAGSSVEIPCKPDGE  165 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~-g~~~----~~~~L~V~~~--------------~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~  165 (940)
                      +++.+|+|.|+|.+.+.. |...    ..+.|.|...              ..+.+...+....+.+|++++|.|.+.+.
T Consensus       107 ~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  186 (291)
T 2gki_A          107 SLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQS  186 (291)
T ss_dssp             SCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSC
T ss_pred             cCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCc
Confidence            999999999999999874 2111    1345666551              12344455667789999999999999988


Q ss_pred             CCC------eEEEeeCC--eecc---c---------cCceEEee---eceEEEeecccCCCceEEEEEEcCC
Q psy11143        166 PLP------RISWSKDE--AEFV---E---------DRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       166 P~p------~ItW~k~g--~~i~---~---------~~~~~~~~---~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      |.+      .+.|+|+.  ..+.   .         ..++....   ..+|.|.+++.+|+|.|+|.+.|..
T Consensus       187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            765      89999952  2111   0         23333322   2379999999999999999999853

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.56  E-value=7.1e-14  Score=147.20  Aligned_cols=175  Identities=16%  Similarity=0.231  Sum_probs=112.9

Q ss_pred             cCCceeecCCCcEEEEEEeCCCC--CCeEEEeeCC--eecc----------------ccCceEEee-----eceEEEeec
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKDE--AEFV----------------EDRNHKIHR-----TGSLRLYNI  198 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k~g--~~i~----------------~~~~~~~~~-----~~sL~I~~v  198 (940)
                      .+....+.+|++++|.|.+.+.+  .+.+.|++..  ..+.                ...++.+..     ..+|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence            34567889999999999998764  5789999842  2110                123454443     227999999


Q ss_pred             ccCCCceEEEEEEcCC--cc----eeeeeeeeecC---CCCeeeeCCCeeEEecC-CeEEEEEEEeee-CCC-eEEEEE-
Q psy11143        199 GPQDSGLYRCTASNLL--GE----DVAEGYLTVTG---APPIFIQRPVSTTYSTG-STSRITCLVEGH-PLP-QMTWFH-  265 (940)
Q Consensus       199 ~~~DsG~YtC~a~N~~--g~----~s~s~~L~V~~---~~p~~~~~p~~~~v~~G-~~v~L~C~v~G~-P~p-~ItW~k-  265 (940)
                      +.+|+|.|.|.+.+..  +.    ....+.|.|..   .+|.+........+..| +.++|.|.+.|. |.| .|+|++ 
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~  165 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYK  165 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence            9999999999998422  11    22345677764   23444322222234578 999999999986 776 999999 


Q ss_pred             CCeecCCC---Cce----EEeecCeEEEEeeecc--CCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        266 DGNSLDSD---DHV----TYEHDGFVLVLNGVRE--SDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       266 ~g~~l~~~---~~~----~~~~~g~sL~I~~v~~--~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      +|..+...   ...    .+.. ...|.|.....  +|.|.|+|.|.|..+.......+.|..
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~-~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~  227 (232)
T 1dn0_B          166 NNSDISSTRGFPSVLRGGKYAA-TSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA  227 (232)
T ss_dssp             TSCEECCEEECCCEEETTEEEE-EEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred             CCCceeeEEECCccccCCcEEE-EEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence            88877541   000    1111 12478887776  789999999999999876666655543

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.56  E-value=1.3e-14  Score=149.86  Aligned_cols=157  Identities=15%  Similarity=0.243  Sum_probs=102.5

Q ss_pred             ecCCeEEEEEEEeeeCC----CeEEEEECCeecCCCCc--eEEeecCeEEEEe------eeccCCCeEEEEEEEeCCCCc
Q psy11143        242 STGSTSRITCLVEGHPL----PQMTWFHDGNSLDSDDH--VTYEHDGFVLVLN------GVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~P~----p~ItW~k~g~~l~~~~~--~~~~~~g~sL~I~------~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .+|++++|.|.+.|.++    +.|+|+|++..+.....  .....++. +.+.      .....|+|.|+|.|.|..+..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~-~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNST-YRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSC-EEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCc-EEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            68999999999999753    49999999987754311  11112232 4333      223345999999999998865


Q ss_pred             eeEEEEEE--eeccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeeccCC--cEEEeeec------eE
Q psy11143        310 ESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDR--NHKIHRTG------SL  377 (940)
Q Consensus       310 ~~s~~l~V--~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~~--~~~i~~~~------sL  377 (940)
                      .....+.+  ....+|.+...+.......|..++|.|.+.|. |.+ .|+|+|+|..+....  ......++      .|
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l  174 (207)
T 1l6x_A           95 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL  174 (207)
T ss_dssp             CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEE
T ss_pred             ceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEE
Confidence            44333422  33467777655443322346669999999985 543 999999998775321  11112233      34


Q ss_pred             EEecCCCCCCeEEEEEEEeCCe
Q psy11143        378 RLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       378 ~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      .|.....+|.|.|+|.|.|...
T Consensus       175 ~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          175 TVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEEHHHHHTTCCEEEEEECTTS
T ss_pred             EECHHHcCCCCEEEEEEEcCCc
Confidence            5555555679999999999754

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.56  E-value=2e-14  Score=155.99  Aligned_cols=177  Identities=18%  Similarity=0.295  Sum_probs=119.7

Q ss_pred             CCeeEEecCCeEEEEEEEeee--CCCeEEEEECC--eecC-----------------CCCceEEeecC----eEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NSLD-----------------SDDHVTYEHDG----FVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~--P~p~ItW~k~g--~~l~-----------------~~~~~~~~~~g----~sL~I~~v  290 (940)
                      |....+.+|++++|.|.+.+.  +.+.+.|++..  ....                 ...++.+..++    .+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            667788999999999999875  56799999742  1110                 11244444222    35999999


Q ss_pred             ccCCCeEEEEEEEeCC---------CCceeEEEEEEee-------------ccCCeEEEcCCceeecCCCeEEEEEeecC
Q psy11143        291 RESDAGVYNCVAQNSE---------GSAESVAMIRING-------------HRAPRLVVKPFDMRAPAGSSVEIPCKPDG  348 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~---------Gs~~~s~~l~V~~-------------~~~P~i~~~p~~~~v~~G~~vtL~C~v~g  348 (940)
                      +.+|+|.|.|.+.|..         ........|.|..             ..+|.+...|. ..+.+|++|+|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            9999999999999871         1122234555543             12455555555 88999999999999998


Q ss_pred             -cC-CCeEEEEeC--Ceeec------------cCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeCCee---EEEEEE
Q psy11143        349 -EP-LPRISWSKD--EAEFV------------EDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGE---DVAEGY  406 (940)
Q Consensus       349 -~P-~p~i~W~k~--g~~i~------------~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~~G~---~~~s~~  406 (940)
                       .+ .+.+.|+|.  +....            ...++.+...+   +|.|.+++.+|+|.|.|.+.|..+.   ....+.
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~  245 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTK  245 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCE
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCEE
Confidence             44 379999873  22111            12455554433   5999999999999999999998621   223446


Q ss_pred             EEEecCC
Q psy11143        407 LTVTGEN  413 (940)
Q Consensus       407 L~V~~~~  413 (940)
                      |.|...+
T Consensus       246 l~V~~~~  252 (280)
T 3fku_X          246 LTVLGQP  252 (280)
T ss_dssp             EEEC---
T ss_pred             EEECCCC
Confidence            7776543

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.56  E-value=8.2e-15  Score=151.31  Aligned_cols=171  Identities=16%  Similarity=0.244  Sum_probs=106.1

Q ss_pred             CeEEeCCCcEEE--ecCCeEEEEEEeeccCC----CeEEEEECCEeecCCCC--eEEEeeceE-----EEEcccccCCCe
Q psy11143         46 PIFIQRPVSTTY--STGSTSRITCLVEGHPL----PQMTWFHDGNSLDSDDH--VTYEHDGFV-----LVLNGVRESDAG  112 (940)
Q Consensus        46 P~~~~~p~~~~V--~eGesv~L~C~v~g~P~----p~V~W~kdg~~I~~~~~--~~~~~~gs~-----L~I~~v~~~DsG  112 (940)
                      |.+...|....+  .+|+.++|.|.+.|.++    +.|+|+|++..+.....  .....++.+     |.|.....+|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            334444433333  79999999999998652    49999999988754311  111122221     233333445599


Q ss_pred             EEEEEEEeCCCceEEEEEEEE--ecccCCeeEecCCceeecCCCcEEEEEEeCC-CCC-CeEEEeeCCeeccccCc--eE
Q psy11143        113 VYNCVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPL-PRISWSKDEAEFVEDRN--HK  186 (940)
Q Consensus       113 ~YtC~a~n~~g~~~~~~~L~V--~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~-p~ItW~k~g~~i~~~~~--~~  186 (940)
                      .|+|.|.|..+.......+.+  ....+|.+.+.+.......|..++|.|.+.| .|. +.|+|+++|..+.....  ..
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  161 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPV  161 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCE
T ss_pred             eEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCce
Confidence            999999998876533333322  2334566555444333335666999999998 454 49999999987753211  11


Q ss_pred             Eeeec------eEEEeecccCCCceEEEEEEcCCcc
Q psy11143        187 IHRTG------SLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       187 ~~~~~------sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                      ...++      .|.|......|.|.|+|.|.|....
T Consensus       162 ~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          162 LDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             ECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            12222      3555555556799999999997543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.55  E-value=6.5e-15  Score=155.20  Aligned_cols=172  Identities=15%  Similarity=0.168  Sum_probs=115.7

Q ss_pred             CCeE-EeCCCcEEEecCCeEEEEEEeecc-CC-C-eEEEEECCEee-cCCCCeE-EEeec-----eEEEEcccccCCCeE
Q psy11143         45 PPIF-IQRPVSTTYSTGSTSRITCLVEGH-PL-P-QMTWFHDGNSL-DSDDHVT-YEHDG-----FVLVLNGVRESDAGV  113 (940)
Q Consensus        45 pP~~-~~~p~~~~V~eGesv~L~C~v~g~-P~-p-~V~W~kdg~~I-~~~~~~~-~~~~g-----s~L~I~~v~~~DsG~  113 (940)
                      +|.+ ...|....+.+|+.++|.|.+.|. |. + .|+|+++|..+ ....... ...++     ..|.|.+++.+|+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            4444 456777778899999999999984 64 4 99999999877 3222211 11222     358999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEe--cccCCeeEecCCceeecCCCcEEEEEEeCCC-C-CCeEEEeeCCeeccccCce----
Q psy11143        114 YNCVAQNSEGSAESVAMIRIN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-P-LPRISWSKDEAEFVEDRNH----  185 (940)
Q Consensus       114 YtC~a~n~~g~~~~~~~L~V~--~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P-~p~ItW~k~g~~i~~~~~~----  185 (940)
                      |+|.|.|..+.......+.+.  ...+|.+.+.+.......|..++|.|.+.|. | .+.|+|+++|..+......    
T Consensus        92 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  171 (231)
T 2w59_A           92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAV  171 (231)
T ss_dssp             EEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCC
T ss_pred             EEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCcc
Confidence            999999987654333333221  1134555443322222235679999999984 4 3699999999887543211    


Q ss_pred             ---------------EEeeeceEEEeecccCCCceEEEEEEcCCcc
Q psy11143        186 ---------------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       186 ---------------~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                                     .+...+.|.|......|.|.|+|.|.|....
T Consensus       172 ~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          172 LPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             EECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             ccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence                           1112235778888888899999999997654

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.55  E-value=4.3e-14  Score=150.83  Aligned_cols=174  Identities=13%  Similarity=0.239  Sum_probs=116.9

Q ss_pred             CCCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--E---ee--------------cCCCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--N---SL--------------DSDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~---~I--------------~~~~~~~~~~~----gs~L~I~~  105 (940)
                      +|..+.+.+|++|+|.|.+.+.  +...+.|||..  .   .+              ....++.+..+    ...|.|.+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            3556789999999999999763  35689999842  1   11              01134444422    23489999


Q ss_pred             cccCCCeEEEEEEEeCC----CceEEEEEEEEec--ccCCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCCe
Q psy11143        106 VRESDAGVYNCVAQNSE----GSAESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEA  177 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~----g~~~~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g~  177 (940)
                      ++.+|+|.|.|.+.+..    ......+.|.|..  ...|.+...+....+..|+.++|.|.+.+ .|.+ .++|++++.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            99999999999998763    1122234566652  23466654555556778999999999998 6766 899999886


Q ss_pred             eccc-------cCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        178 EFVE-------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       178 ~i~~-------~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      .+..       .. ..+...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       166 ~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          166 SSGVHTFPAVLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             CTTEEECCCEEET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ecceEeCCccccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            3210       11 123334679999999999 99999999998877766666554

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.55  E-value=6.9e-14  Score=150.45  Aligned_cols=168  Identities=18%  Similarity=0.280  Sum_probs=115.4

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Eee------c-----------CCCCeEEEee----ceEEEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL------D-----------SDDHVTYEHD----GFVLVL  103 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~I------~-----------~~~~~~~~~~----gs~L~I  103 (940)
                      ..+|..+.+.+|++|+|.|.+.+.+  .+.|.|||+.  ..+      .           ...++.+..+    ...|.|
T Consensus        10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   89 (261)
T 2xqy_G           10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQL   89 (261)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEE
Confidence            3456778899999999999999876  5799999863  211      1           0234444432    346899


Q ss_pred             cccccCCCeEEEEEEEeCCCce-E--EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCC-CCCC-eEEEeeCC
Q psy11143        104 NGVRESDAGVYNCVAQNSEGSA-E--SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDE  176 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~~g~~-~--~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p-~ItW~k~g  176 (940)
                      .+++.+|+|.|.|.+.+..+.. .  ..+.|.|...  .+|.+...+....+.+|+.++|.|.+.+ .|.+ .|.|++++
T Consensus        90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g  169 (261)
T 2xqy_G           90 SSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS  169 (261)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCC
Confidence            9999999999999999864321 1  2346777642  2355554333345678999999999987 4766 99999988


Q ss_pred             eecccc--Cc----eEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        177 AEFVED--RN----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       177 ~~i~~~--~~----~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      ..+...  ..    ......+.|.|.++..+| |.|+|.|.|.....
T Consensus       170 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          170 LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             CCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            764211  10    122234579999888878 99999999965543

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.55  E-value=7.2e-15  Score=156.24  Aligned_cols=193  Identities=16%  Similarity=0.252  Sum_probs=112.5

Q ss_pred             eEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEE-EecCCeEEEEEEeeccC----CCeEEEEECCEeecCCCCe--E
Q psy11143         21 GRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTT-YSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDSDDHV--T   93 (940)
Q Consensus        21 G~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~-V~eGesv~L~C~v~g~P----~p~V~W~kdg~~I~~~~~~--~   93 (940)
                      |.|.|.+++..+.  ..-...+..|+.++..|.... +..|+.++|.|.+.|.+    ..+|+|+|+|..+......  .
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~   78 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE   78 (240)
T ss_dssp             ------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCE
T ss_pred             CceeeeeeecCCC--CCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccce
Confidence            7899999987663  111111123445555666665 66799999999999853    3489999999988542110  0


Q ss_pred             EEeec-----eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE--EecccCCeeEecCCceeecCCCcEEEEEEeCC-C
Q psy11143         94 YEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR--INGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-E  165 (940)
Q Consensus        94 ~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~--V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~  165 (940)
                      ...++     +.|.|.....+|.|.|+|.|.+..+.......+.  +....+|.+.+.+......+|+.++|.|.+.+ +
T Consensus        79 ~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~  158 (240)
T 4acp_A           79 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFY  158 (240)
T ss_dssp             EC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEB
T ss_pred             ECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEe
Confidence            11111     3468888888899999999999876433333332  22334577776665544445999999999998 5


Q ss_pred             CCC-eEEEeeCCeeccccC--------ceEEeeeceEEEeecccCCCceEEEEEEcCCc
Q psy11143        166 PLP-RISWSKDEAEFVEDR--------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       166 P~p-~ItW~k~g~~i~~~~--------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      |.+ .|+|+++|..+....        ...+...+.|.|......+.|.|+|.|.+..-
T Consensus       159 P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          159 PSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             SSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            654 899999998764211        11122234567766666789999999998653

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.55  E-value=1e-14  Score=154.84  Aligned_cols=167  Identities=18%  Similarity=0.239  Sum_probs=113.2

Q ss_pred             eeCCCeeE-EecCCeEEEEEEEeee---CCC-eEEEEECCeecCCCCc---e-----EEeecCeEEEEeeeccCCCeEEE
Q psy11143        233 IQRPVSTT-YSTGSTSRITCLVEGH---PLP-QMTWFHDGNSLDSDDH---V-----TYEHDGFVLVLNGVRESDAGVYN  299 (940)
Q Consensus       233 ~~~p~~~~-v~~G~~v~L~C~v~G~---P~p-~ItW~k~g~~l~~~~~---~-----~~~~~g~sL~I~~v~~~DsG~Yt  299 (940)
                      ...+.... +.+|++++|.|.+.|.   |.+ .|+|+|++..+.....   .     .+. ....|.|.++..+|+|.|+
T Consensus        20 ~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~s~L~I~~~~~~D~g~Y~   98 (239)
T 1i1c_A           20 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR-SVSELPIVERDWLNGKTFK   98 (239)
T ss_dssp             EECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEE-EEEEEECCHHHHHTTCCEE
T ss_pred             EECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEE-EEEEEEEEhhHccCCCeEE
Confidence            33333333 6799999999999987   776 9999999876643210   0     011 1134999999999999999


Q ss_pred             EEEEeCCCCceeEEEEEE--eeccCCeEEEcCCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCeeeccCC--cEEEee
Q psy11143        300 CVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDR--NHKIHR  373 (940)
Q Consensus       300 C~A~N~~Gs~~~s~~l~V--~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~~i~~~~--~~~i~~  373 (940)
                      |.|.|..+.......+.+  ....+|.+.+.+.......|+.++|.|.+.| .|.+ .|+|+|+|..+....  ......
T Consensus        99 C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  178 (239)
T 1i1c_A           99 CKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDT  178 (239)
T ss_dssp             EEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECT
T ss_pred             EEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECC
Confidence            999999886544333322  3456787776655433345889999999998 4553 899999998774321  111122


Q ss_pred             ece------EEEecCCCCCCeEEEEEEEeCCee
Q psy11143        374 TGS------LRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       374 ~~s------L~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      +++      |.|.....+|.|.|+|.|.|..-.
T Consensus       179 dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          179 DGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             TSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            333      444444445799999999997643

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.54  E-value=6.7e-15  Score=156.49  Aligned_cols=192  Identities=16%  Similarity=0.263  Sum_probs=110.8

Q ss_pred             ceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeE-EecCCeEEEEEEEeeeC----CCeEEEEECCeecCCCCce--
Q psy11143        204 GLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTT-YSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDSDDHV--  276 (940)
Q Consensus       204 G~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~-v~~G~~v~L~C~v~G~P----~p~ItW~k~g~~l~~~~~~--  276 (940)
                      |.|.|..++..+.  ...... ...|..++..|.... +..|+.++|.|.+.|.+    ...|+|+++|..+......  
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~-~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~   77 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPEL-LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR   77 (240)
T ss_dssp             -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred             CceeeeeeecCCC--CCcccc-CCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence            7899999987664  111111 113444455555555 55799999999999964    2389999999988543111  


Q ss_pred             EEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEE--EeeccCCeEEEcCCceeecCCCeEEEEEeecC-
Q psy11143        277 TYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR--INGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-  348 (940)
Q Consensus       277 ~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~--V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g-  348 (940)
                      ....++     +.|.|.....+|.|.|+|.|.|..+.......+.  +....+|.+.+.+.......|+.++|.|.+.| 
T Consensus        78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf  157 (240)
T 4acp_A           78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF  157 (240)
T ss_dssp             EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE
T ss_pred             eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEE
Confidence            011122     2377777777789999999999887543333332  33456788777665443345899999999998 


Q ss_pred             cCCC-eEEEEeCCeeeccCC--cE------EEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        349 EPLP-RISWSKDEAEFVEDR--NH------KIHRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       349 ~P~p-~i~W~k~g~~i~~~~--~~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      +|.+ .|.|+|+|..+....  ..      .....+.|.|......+.|.|+|.|.|..
T Consensus       158 ~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          158 YPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             BSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             eCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence            5665 899999998764211  11      11123356666665567899999999964

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.54  E-value=6.3e-13  Score=139.45  Aligned_cols=242  Identities=14%  Similarity=0.190  Sum_probs=169.8

Q ss_pred             CeeEecCCceeecCCCcEEEEEEeC-CCC---CCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCC
Q psy11143        139 PRLVVKPFDMRAPAGSSVEIPCKPD-GEP---LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       139 P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P---~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      +.+.+.|....+..|+.++|+|.+. |.|   ...++|+|++..+...       .+.|.+..+...++|.|+|.+.+..
T Consensus         3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-------T~tLti~s~t~sdSG~YqCvVTDa~   75 (304)
T 3shs_A            3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSENAGSYKVTVQDTD   75 (304)
T ss_dssp             EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-------cceEEeeeccccCCeEEEEEEEECC
Confidence            3456677778899999999999987 456   3479999999876542       3478888999999999999999988


Q ss_pred             cceeeeeeeeecCCCC-eee-eCCCeeEEecCCeEEEEEEE--ee-eC-----CCeEEEEECCeecCCCCceEEeecCeE
Q psy11143        215 GEDVAEGYLTVTGAPP-IFI-QRPVSTTYSTGSTSRITCLV--EG-HP-----LPQMTWFHDGNSLDSDDHVTYEHDGFV  284 (940)
Q Consensus       215 g~~s~s~~L~V~~~~p-~~~-~~p~~~~v~~G~~v~L~C~v--~G-~P-----~p~ItW~k~g~~l~~~~~~~~~~~g~s  284 (940)
                      |....+..+.|..... .+. ..|....+..|..+.|.+.+  .| .|     ..++.|+|++..+...         ..
T Consensus        76 Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA---------q~  146 (304)
T 3shs_A           76 TMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT---------QD  146 (304)
T ss_dssp             TCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS---------SE
T ss_pred             CCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc---------cc
Confidence            8765555555553222 222 23555666678899999987  43 44     4599999999876432         23


Q ss_pred             EEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeec--------CcCCC--eE
Q psy11143        285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD--------GEPLP--RI  354 (940)
Q Consensus       285 L~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~--------g~P~p--~i  354 (940)
                      |++......++|.|+|.+.|..+....+..+.|...-.+.-........+..|+.+.|...+.        |.|..  .+
T Consensus       147 lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (304)
T 3shs_A          147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY  226 (304)
T ss_dssp             EEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEE
T ss_pred             cceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEE
Confidence            777788889999999999999886666555555432222212222345678899999887653        34443  56


Q ss_pred             EEEe--CCe----eecc-----CCcEEEeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143        355 SWSK--DEA----EFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       355 ~W~k--~g~----~i~~-----~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .|+.  +|.    .|..     -..+.+..++.|.-....-+|...|.|.|.-
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (304)
T 3shs_A          227 NWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKL  279 (304)
T ss_dssp             EEEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHHH
Confidence            7874  332    1111     1356677788888888899999999999864

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.54  E-value=1.4e-14  Score=153.75  Aligned_cols=170  Identities=18%  Similarity=0.249  Sum_probs=113.0

Q ss_pred             eEEeCCCcEE-EecCCeEEEEEEeecc---CCC-eEEEEECCEeecCCCC---eEEE----eeceEEEEcccccCCCeEE
Q psy11143         47 IFIQRPVSTT-YSTGSTSRITCLVEGH---PLP-QMTWFHDGNSLDSDDH---VTYE----HDGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        47 ~~~~~p~~~~-V~eGesv~L~C~v~g~---P~p-~V~W~kdg~~I~~~~~---~~~~----~~gs~L~I~~v~~~DsG~Y  114 (940)
                      .+...|.... +.+|+.++|.|.+.+.   |.+ .|+|+|++..+.....   .+..    .....|.|.+++.+|+|.|
T Consensus        18 v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y   97 (239)
T 1i1c_A           18 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTF   97 (239)
T ss_dssp             EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeE
Confidence            3334444444 7899999999999886   766 9999999877643210   0100    1223589999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEE--ecccCCeeEecCCceeecCCCcEEEEEEeCC-CCC-CeEEEeeCCeeccccCc--eEEe
Q psy11143        115 NCVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPL-PRISWSKDEAEFVEDRN--HKIH  188 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L~V--~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~-p~ItW~k~g~~i~~~~~--~~~~  188 (940)
                      +|.+.|..+.......+.+  ....+|.+.+.+.......|+.++|.|.+.| .|. ..|+|+++|..+.....  ....
T Consensus        98 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  177 (239)
T 1i1c_A           98 KCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMD  177 (239)
T ss_dssp             EEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEEC
T ss_pred             EEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceEC
Confidence            9999998886533333322  2334566665554443445889999999998 555 48999999987753211  1112


Q ss_pred             eec------eEEEeecccCCCceEEEEEEcCCcc
Q psy11143        189 RTG------SLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       189 ~~~------sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                      .++      .|.|......|.|.|+|.|.|....
T Consensus       178 ~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          178 TDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             TTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            222      3445544455799999999997644

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.54  E-value=4.1e-14  Score=152.19  Aligned_cols=167  Identities=18%  Similarity=0.274  Sum_probs=116.0

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eec------C-----------CCCceEEeec----CeEEEEee
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL------D-----------SDDHVTYEHD----GFVLVLNG  289 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l------~-----------~~~~~~~~~~----g~sL~I~~  289 (940)
                      .+....+.+|++++|.|.+.+.|  .+.|.|+|+.  ..+      .           ...++.+..+    ..+|.|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            35567889999999999999876  6799999863  211      0           1235555432    34699999


Q ss_pred             eccCCCeEEEEEEEeCCCCc---eeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCee
Q psy11143        290 VRESDAGVYNCVAQNSEGSA---ESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAE  362 (940)
Q Consensus       290 v~~~DsG~YtC~A~N~~Gs~---~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~  362 (940)
                      ++.+|+|.|.|.+.|..+..   ...+.|.|..  ..+|.+...+....+..|+.++|.|.+.+. |.| .|.|++++..
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~  171 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  171 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCc
Confidence            99999999999999864311   1234666653  235666543433346789999999999985 777 9999999865


Q ss_pred             eccC--Cc----EEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        363 FVED--RN----HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       363 i~~~--~~----~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      +...  ..    -.....+.|.|..+..+| |.|+|.|.|......
T Consensus       172 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~  216 (261)
T 2xqy_G          172 SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK  216 (261)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             CceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc
Confidence            4211  11    112234579999988888 999999999766544

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.54  E-value=2.8e-14  Score=154.50  Aligned_cols=174  Identities=17%  Similarity=0.270  Sum_probs=119.0

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Ee---e----------c----CCCCeEEEe---eceEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NS---L----------D----SDDHVTYEH---DGFVLV  102 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~---I----------~----~~~~~~~~~---~gs~L~  102 (940)
                      .+.+...|..+.+.+|++++|.|.+.+.|.+.|.|+|++  ..   +          .    ...++.+..   ....|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            345666788899999999999999988888899999864  11   0          0    122444432   234689


Q ss_pred             EcccccCCCeEEEEEEEeCCC----ce--EEEEEEEEecc----cCCeeEec-CCceeecCCCcEEEEEEeCCC-CC-Ce
Q psy11143        103 LNGVRESDAGVYNCVAQNSEG----SA--ESVAMIRINGH----RAPRLVVK-PFDMRAPAGSSVEIPCKPDGE-PL-PR  169 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g----~~--~~~~~L~V~~~----~~P~~~~~-p~~~~v~~Ge~vtL~C~v~g~-P~-p~  169 (940)
                      |.+++.+|+|.|+|.+.+..+    ..  ...+.|.|...    .+|.+.+. +....+.+|+.++|.|.+.+. |. +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999998432    11  12345666642    24555443 334455679999999999985 54 69


Q ss_pred             EEEeeCCeeccccCc--------------eEEeeeceEEEeecccCC-CceEEEEEEcCCccee
Q psy11143        170 ISWSKDEAEFVEDRN--------------HKIHRTGSLRLYNIGPQD-SGLYRCTASNLLGEDV  218 (940)
Q Consensus       170 ItW~k~g~~i~~~~~--------------~~~~~~~sL~I~~v~~~D-sG~YtC~a~N~~g~~s  218 (940)
                      |+|++++..+.....              ..+.....|.|.+....| .|.|+|.|.|......
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            999999987754311              112223357777777665 6789999999765443

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.54  E-value=3.6e-14  Score=151.45  Aligned_cols=173  Identities=19%  Similarity=0.277  Sum_probs=113.6

Q ss_pred             cCCceeecCCCcEEEEEEeCCC--CCCeEEEeeCC--eec--c---------------ccCceEEeee-----ceEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGE--PLPRISWSKDE--AEF--V---------------EDRNHKIHRT-----GSLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~--P~p~ItW~k~g--~~i--~---------------~~~~~~~~~~-----~sL~I~~  197 (940)
                      .+..+.+.+|++++|.|.+.+.  +...+.|++..  ...  .               ...++.+..+     .+|.|.+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            3456788999999999999763  35689999832  110  0               1134444432     2499999


Q ss_pred             cccCCCceEEEEEEcCC----cceeeeeeeeecC---CCCeeeeCCCeeEEecCCeEEEEEEEee-eCCC-eEEEEECCe
Q psy11143        198 IGPQDSGLYRCTASNLL----GEDVAEGYLTVTG---APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGN  268 (940)
Q Consensus       198 v~~~DsG~YtC~a~N~~----g~~s~s~~L~V~~---~~p~~~~~p~~~~v~~G~~v~L~C~v~G-~P~p-~ItW~k~g~  268 (940)
                      ++.+|+|.|.|.+.+..    ........|.|..   .+|.+...+....+..|+.++|.|.+.| +|.+ .++|++++.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            99999999999998752    2223334566652   3455544444455668999999999998 6767 899999987


Q ss_pred             ecCCCC--c----eEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143        269 SLDSDD--H----VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  318 (940)
Q Consensus       269 ~l~~~~--~----~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~  318 (940)
                      .+....  .    -.+... ..|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       166 ~~~~~~~~~~~~~g~~~~~-s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          166 SSGVHTFPAVLQSDLYTLS-SSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             CTTEEECCCEEETTEEEEE-EEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ecceEeCCccccCCeEEEE-EEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            432110  0    011111 348899998889 99999999998877666555543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.54  E-value=1.7e-13  Score=142.60  Aligned_cols=162  Identities=20%  Similarity=0.342  Sum_probs=111.9

Q ss_pred             cCCceeecCCCcEEEEEEeCCCC--CCeEEEeeCC--eecc-------------------ccCceEEeeec-----eEEE
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKDE--AEFV-------------------EDRNHKIHRTG-----SLRL  195 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k~g--~~i~-------------------~~~~~~~~~~~-----sL~I  195 (940)
                      .+....+.+|++++|.|.+.+.+  .+.+.|++..  ....                   ...++.+..+.     +|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            34567789999999999998743  5789999732  1110                   12344444332     5999


Q ss_pred             eecccCCCceEEEEEEcCC--cceeeeeeeeecC---CCCeee-eCCCeeEEecCCeEEEEEEEee-eCC-C-eEEEEEC
Q psy11143        196 YNIGPQDSGLYRCTASNLL--GEDVAEGYLTVTG---APPIFI-QRPVSTTYSTGSTSRITCLVEG-HPL-P-QMTWFHD  266 (940)
Q Consensus       196 ~~v~~~DsG~YtC~a~N~~--g~~s~s~~L~V~~---~~p~~~-~~p~~~~v~~G~~v~L~C~v~G-~P~-p-~ItW~k~  266 (940)
                      .+++.+|+|.|.|.+.+..  ........|.|..   .+|.+. ..+...  .+|+.++|.|.+.+ .|. + .++|+++
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~  163 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSES  163 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence            9999999999999999863  1223334566642   234443 223322  68999999999998 676 4 9999999


Q ss_pred             CeecC----------CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        267 GNSLD----------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       267 g~~l~----------~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      |..+.          .+..+...   ..|.|.....+|+|.|+|.|.|..+...
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~---s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          164 GQGVTARNFPPSQDASGDLYTTS---SQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             STTCEEEECCCEECSSSSCEEEE---EEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CEECceEEcCceeeCCCCcEEEE---EEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            87763          12222211   2488999999999999999999876543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.54  E-value=5.5e-14  Score=152.54  Aligned_cols=162  Identities=17%  Similarity=0.296  Sum_probs=111.1

Q ss_pred             CCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--Eeec-----------------CCCCeEEEeec----eEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NSLD-----------------SDDHVTYEHDG----FVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~~I~-----------------~~~~~~~~~~g----s~L~I~~v  106 (940)
                      |..+.+.+|++|+|.|.+.+.  +.+.+.|||..  ....                 ...++.+..+.    ..|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            778889999999999999875  56799999742  1100                 01234443222    46899999


Q ss_pred             ccCCCeEEEEEEEeCC-------Cc--eEEEEEEEEec-------------ccCCeeEecCCceeecCCCcEEEEEEeCC
Q psy11143        107 RESDAGVYNCVAQNSE-------GS--AESVAMIRING-------------HRAPRLVVKPFDMRAPAGSSVEIPCKPDG  164 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~-------g~--~~~~~~L~V~~-------------~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g  164 (940)
                      +.+|+|.|.|.+.+..       ..  ....+.|.|..             ...+.+...+. ..+.+|++++|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            9999999999999861       11  11244566654             12334444444 88999999999999998


Q ss_pred             -CC-CCeEEEeeC--Ceecc------------ccCceEEeee---ceEEEeecccCCCceEEEEEEcCC
Q psy11143        165 -EP-LPRISWSKD--EAEFV------------EDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       165 -~P-~p~ItW~k~--g~~i~------------~~~~~~~~~~---~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                       .+ .+.+.|++.  +..+.            ...++.....   .+|.|.+++.+|+|.|+|.+.+..
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence             44 478999882  22221            0233333322   259999999999999999999865

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.53  E-value=6.6e-14  Score=148.25  Aligned_cols=176  Identities=15%  Similarity=0.224  Sum_probs=118.1

Q ss_pred             eeEecCCceeecCCCcEEEEEEeCCC--CCCeEEEeeCC--eec---c--------------ccCceEEee-----eceE
Q psy11143        140 RLVVKPFDMRAPAGSSVEIPCKPDGE--PLPRISWSKDE--AEF---V--------------EDRNHKIHR-----TGSL  193 (940)
Q Consensus       140 ~~~~~p~~~~v~~Ge~vtL~C~v~g~--P~p~ItW~k~g--~~i---~--------------~~~~~~~~~-----~~sL  193 (940)
                      .+...|..+.+.+|++++|.|.+.+.  +.+.+.|+|..  ..+   .              ...++.+..     ..+|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            34455677889999999999999875  66799999842  211   0              123444432     3479


Q ss_pred             EEeecccCCCceEEEEEEcCCc-----c--eeeeeeeeecCC------CCeeee-CCCeeEEecCCeEEEEEEEeee-CC
Q psy11143        194 RLYNIGPQDSGLYRCTASNLLG-----E--DVAEGYLTVTGA------PPIFIQ-RPVSTTYSTGSTSRITCLVEGH-PL  258 (940)
Q Consensus       194 ~I~~v~~~DsG~YtC~a~N~~g-----~--~s~s~~L~V~~~------~p~~~~-~p~~~~v~~G~~v~L~C~v~G~-P~  258 (940)
                      .|.+++.+|+|.|.|.+.+...     .  ......|.|...      +|...+ .+....+..|+.++|.|.+.|. |.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            9999999999999999987531     1  123456777642      232222 2333445679999999999986 64


Q ss_pred             -CeEEEEECCe-ecCCCCc-eEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        259 -PQMTWFHDGN-SLDSDDH-VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       259 -p~ItW~k~g~-~l~~~~~-~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                       +.|+|++++. .+..... .....++     ..|.|..+.. + |.|+|.|.|..+.......+.+
T Consensus       163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence             6999999987 5643210 0111222     2478877665 4 9999999999988766555554

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.53  E-value=6.4e-14  Score=151.67  Aligned_cols=171  Identities=18%  Similarity=0.275  Sum_probs=118.5

Q ss_pred             CeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC--eec--------------C---CCCceEEeec---CeEEEE
Q psy11143        230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL--------------D---SDDHVTYEHD---GFVLVL  287 (940)
Q Consensus       230 p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g--~~l--------------~---~~~~~~~~~~---g~sL~I  287 (940)
                      +.+...+....+.+|++++|.|.+.+.|.+.+.|+|++  ...              .   ...++.+..+   ..+|.|
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV  104 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence            34555677888999999999999988888899999863  111              0   1235555432   236999


Q ss_pred             eeeccCCCeEEEEEEEeCCCC------ceeEEEEEEee----ccCCeEEEc-CCceeecCCCeEEEEEeecCc-CC-CeE
Q psy11143        288 NGVRESDAGVYNCVAQNSEGS------AESVAMIRING----HRAPRLVVK-PFDMRAPAGSSVEIPCKPDGE-PL-PRI  354 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~Gs------~~~s~~l~V~~----~~~P~i~~~-p~~~~v~~G~~vtL~C~v~g~-P~-p~i  354 (940)
                      .+++.+|+|.|+|.+.|..+.      ......|.|..    ..+|.+... +....+.+|+.++|.|.+.|. |. +.|
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  184 (279)
T 2wbj_D          105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  184 (279)
T ss_dssp             SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEE
T ss_pred             ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEE
Confidence            999999999999999995321      11234566654    246766543 344455679999999999987 54 699


Q ss_pred             EEEeCCeeeccCCcE--------------EEeeeceEEEecCCCC-CCeEEEEEEEeCCee
Q psy11143        355 SWSKDEAEFVEDRNH--------------KIHRTGSLRLYNIGPQ-DSGLYRCTASNLLGE  400 (940)
Q Consensus       355 ~W~k~g~~i~~~~~~--------------~i~~~~sL~I~~v~~~-D~G~YtC~A~N~~G~  400 (940)
                      +|+++|..+......              .....+.|.|...... +.|.|+|.|.|....
T Consensus       185 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          185 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             EEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            999999877543211              1112235777777665 478899999997654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.53  E-value=4.5e-14  Score=146.65  Aligned_cols=167  Identities=16%  Similarity=0.298  Sum_probs=112.1

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eecC----------------CCCceEEeec----CeEEEEeeec
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSLD----------------SDDHVTYEHD----GFVLVLNGVR  291 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l~----------------~~~~~~~~~~----g~sL~I~~v~  291 (940)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.                ...++.+..+    ..+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            4556788999999999998865  4789999862  2110                1234554432    2369999999


Q ss_pred             cCCCeEEEEEEEeCCCC---ceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeec
Q psy11143        292 ESDAGVYNCVAQNSEGS---AESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFV  364 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs---~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~  364 (940)
                      .+|+|.|.|.+.|..+.   ....+.|.|..  ..+|.+...+....+..|+.++|.|.+.|. |.| .|.|++++..+.
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  166 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSD  166 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCS
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCc
Confidence            99999999999987532   12235667753  235666554433446789999999999987 888 999999886542


Q ss_pred             cCC-cEEE-----eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        365 EDR-NHKI-----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       365 ~~~-~~~i-----~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                      ... ....     ...+.|.  ....+| |.|+|.|.|..|......
T Consensus       167 ~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          167 VHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             CCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             eEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEE
Confidence            111 1111     1112233  344356 999999999998765443

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.52  E-value=7.6e-14  Score=144.90  Aligned_cols=168  Identities=16%  Similarity=0.279  Sum_probs=110.7

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Eee----c------------CCCCeEEEee----ceEEEEccc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSL----D------------SDDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~I----~------------~~~~~~~~~~----gs~L~I~~v  106 (940)
                      +|..+.+.+|++++|.|.+.+.+  .+.|.|+|+.  ..+    .            ...++.+..+    ...|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            35667899999999999998764  4789999863  211    0            1123343321    246899999


Q ss_pred             ccCCCeEEEEEEEeCCCc---eEEEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCCeec
Q psy11143        107 RESDAGVYNCVAQNSEGS---AESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEF  179 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~g~---~~~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g~~i  179 (940)
                      +.+|+|.|.|.+.+..+.   ....+.|.|...  ..|.+...+....+.+|+.++|.|.+.+. |.+ .|+|++++..+
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            999999999999986422   112356777632  23555544434456789999999999985 877 99999987654


Q ss_pred             cccCc-eE-----EeeeceEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143        180 VEDRN-HK-----IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  221 (940)
Q Consensus       180 ~~~~~-~~-----~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~  221 (940)
                      ..... ..     +.....|.  ....+| |.|+|.|.|..+......
T Consensus       166 ~~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          166 DVHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             SCCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             ceEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEE
Confidence            21111 11     11111233  444455 999999999887755443

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.51  E-value=4.7e-14  Score=151.47  Aligned_cols=167  Identities=14%  Similarity=0.302  Sum_probs=99.8

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--Ee---e---c-----------CCCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NS---L---D-----------SDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~~---I---~-----------~~~~~~~~~~----gs~L~I~~  105 (940)
                      +|..+.+.+|++|+|.|.+.+.+  .+.|.|||..  ..   +   .           ...++.+..+    ...|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (257)
T 3bn9_D            6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS   85 (257)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence            34567899999999999998865  5789999853  11   1   0           1234444432    34689999


Q ss_pred             cccCCCeEEEEEEEeCCCc---------e--E--EEEEEEEecc--cCCeeEecCCceeecCCCcEEEEEEeCCC-CCC-
Q psy11143        106 VRESDAGVYNCVAQNSEGS---------A--E--SVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-  168 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g~---------~--~--~~~~L~V~~~--~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p-  168 (940)
                      ++.+|+|.|.|.+.+..|.         .  .  ..+.|.|...  .+|.+........+.+|+.++|.|.+.+. |.+ 
T Consensus        86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi  165 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  165 (257)
T ss_dssp             CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred             CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence            9999999999999987651         1  1  1346777642  23555443333346789999999999984 777 


Q ss_pred             eEEEeeCCeecccc-------CceEEeeeceEEEeecccCCCceEEEEEEcCCccee
Q psy11143        169 RISWSKDEAEFVED-------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  218 (940)
Q Consensus       169 ~ItW~k~g~~i~~~-------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s  218 (940)
                      .|+|++++..+...       ....+...+.|.|.++...| |.|+|.|.|......
T Consensus       166 ~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~  221 (257)
T 3bn9_D          166 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  221 (257)
T ss_dssp             EEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred             EEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence            99999988753211       00111223457888887777 999999999655443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.51  E-value=6.5e-14  Score=129.46  Aligned_cols=92  Identities=30%  Similarity=0.648  Sum_probs=82.7

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .||.|...|.++.+.+|+.+.|.|.+.|.|.|+|+|+|+|..|..+.++++..++  ..|.|.+++.+|+|.|+|.|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            3789999999999999999999999999999999999999999888777766443  46899999999999999999999


Q ss_pred             CCceEEEEEEEEec
Q psy11143        122 EGSAESVAMIRING  135 (940)
Q Consensus       122 ~g~~~~~~~L~V~~  135 (940)
                      .|.....+.|.|..
T Consensus        92 ~G~~~~~~~l~V~~  105 (107)
T 3knb_B           92 AGEAYAAAAVTVLE  105 (107)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEc
Confidence            99988888888865

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.51  E-value=9.1e-14  Score=166.22  Aligned_cols=162  Identities=20%  Similarity=0.309  Sum_probs=117.4

Q ss_pred             CcEEEecCCeEEEEEEe-eccCCCeEEEEECCEeecC------------CCCeEEEeeceEEEEcccccCCCeEEEEEEE
Q psy11143         53 VSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDS------------DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~------------~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      ....+.+|++++|.|.+ .+.|.+.|+|+|++..+..            ..+..+..++ .|.|.+++.+|+|.|+|.+.
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~L~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG-SLFLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS-CEEESSCCGGGCEEEEEEEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc-eEEEeccccccCeEEEEEEE
Confidence            45678999999999999 7889999999998763211            1233333444 57999999999999999999


Q ss_pred             eCCCce-EEEEEEEEecccCCeeEecCCceeecCCCc-EEEEEEeCC-CCCCeEEEeeCCeeccccCce-EE--------
Q psy11143        120 NSEGSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSS-VEIPCKPDG-EPLPRISWSKDEAEFVEDRNH-KI--------  187 (940)
Q Consensus       120 n~~g~~-~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~-vtL~C~v~g-~P~p~ItW~k~g~~i~~~~~~-~~--------  187 (940)
                      |..+.. ...+.|.|...+.+.....+.. .+.+|+. +.|.|.+.+ +|.+.|+|++++..+...... .+        
T Consensus       453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~-~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  531 (581)
T 3o3u_N          453 NRNGKETKSNYRVRVYQIPGKPEIVDSAS-ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHP  531 (581)
T ss_dssp             CTTSCEEEEEEEEEEEBCCCCCEEESCCS-EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECT
T ss_pred             cCCCceeEEEEEEEEEcCCCCCEEEcCCc-ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcC
Confidence            999887 5578888876544333333333 3555555 567999998 699999999999887643221 11        


Q ss_pred             -----eeeceEEEeecccC-CCceEEEEEEcCCcc
Q psy11143        188 -----HRTGSLRLYNIGPQ-DSGLYRCTASNLLGE  216 (940)
Q Consensus       188 -----~~~~sL~I~~v~~~-DsG~YtC~a~N~~g~  216 (940)
                           ...++|.|.+++.+ +.|.|+|.|+|..+.
T Consensus       532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                 12246999998844 488999999998654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.50  E-value=9.4e-14  Score=166.08  Aligned_cols=165  Identities=23%  Similarity=0.400  Sum_probs=121.6

Q ss_pred             ceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeecc------------ccCceEEeeeceEEEeecccCCCceEEEEEEcC
Q psy11143        147 DMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFV------------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~------------~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      ...+.+|++++|.|.+ .+.|.+.|+|++++..+.            ...+..+..+++|.|.+++.+|+|.|+|.+.|.
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~  454 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNR  454 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECT
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcC
Confidence            4678899999999999 788999999999765221            123445556678999999999999999999999


Q ss_pred             Ccce-eeeeeeeecCCCCeeeeCCCeeEEecCCe-EEEEEEEee-eCCCeEEEEECCeecCCCCc-eEEe-------ecC
Q psy11143        214 LGED-VAEGYLTVTGAPPIFIQRPVSTTYSTGST-SRITCLVEG-HPLPQMTWFHDGNSLDSDDH-VTYE-------HDG  282 (940)
Q Consensus       214 ~g~~-s~s~~L~V~~~~p~~~~~p~~~~v~~G~~-v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~-~~~~-------~~g  282 (940)
                      .+.. ...+.|.|...+....+.+....+..|.. +.|.|.+.+ +|.|.|+|+++|..+..... ..+.       ..|
T Consensus       455 ~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g  534 (581)
T 3o3u_N          455 NGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETG  534 (581)
T ss_dssp             TSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTC
T ss_pred             CCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCc
Confidence            8886 67788888754433333333334555555 467999998 69999999999999875432 2221       111


Q ss_pred             -----eEEEEeeec-cCCCeEEEEEEEeCCCCcee
Q psy11143        283 -----FVLVLNGVR-ESDAGVYNCVAQNSEGSAES  311 (940)
Q Consensus       283 -----~sL~I~~v~-~~DsG~YtC~A~N~~Gs~~~  311 (940)
                           ++|.|..++ .++.|.|+|.|+|..+....
T Consensus       535 ~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~~~  569 (581)
T 3o3u_N          535 LFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRA  569 (581)
T ss_dssp             CEEEEEEEEECCCTTSCSCCCEEEEEECSSCSSCC
T ss_pred             eEEEEEEEEEEeccccCCCceEEEEEeccCCCCCc
Confidence                 348898888 55588999999999765443

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.50  E-value=9.9e-14  Score=126.50  Aligned_cols=91  Identities=25%  Similarity=0.503  Sum_probs=80.5

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeee---ceEEEecCCCCCCeEEEEEEE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRT---GSLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~---~sL~I~~v~~~D~G~YtC~A~  395 (940)
                      .||.|...|.++.+.+|++++|.|.+.|.|.|.|+|+|+|..+....  ++.+...   .+|.|.+++.+|+|.|+|.|.
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            47888888888999999999999999999999999999999886543  5555443   379999999999999999999


Q ss_pred             eCCeeEEEEEEEEEec
Q psy11143        396 NLLGEDVAEGYLTVTG  411 (940)
Q Consensus       396 N~~G~~~~s~~L~V~~  411 (940)
                      |..|..+.++.|.|++
T Consensus        84 N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           84 NEFGSDSATVNIHIRS   99 (100)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEEE
Confidence            9999999999999974

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.49  E-value=4.6e-14  Score=151.56  Aligned_cols=164  Identities=15%  Similarity=0.310  Sum_probs=100.5

Q ss_pred             CCeeEEecCCeEEEEEEEeeeC--CCeEEEEECC--eecC-----------------CCCceEEeec----CeEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--NSLD-----------------SDDHVTYEHD----GFVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~g--~~l~-----------------~~~~~~~~~~----g~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ..+.                 ...++.+..+    ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            3456788999999999999875  6789999853  1110                 1235555432    246999999


Q ss_pred             ccCCCeEEEEEEEeCCCC---------c----eeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-e
Q psy11143        291 RESDAGVYNCVAQNSEGS---------A----ESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-R  353 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~Gs---------~----~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~  353 (940)
                      +.+|+|.|.|.+.|..|.         .    .....|.|..  ..+|.+...+....+..|+.++|.|.+.|. |.| .
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~  166 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  166 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCE
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcE
Confidence            999999999999997651         1    1234666653  235666543333346789999999999986 887 9


Q ss_pred             EEEEeCCeeec---------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        354 ISWSKDEAEFV---------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       354 i~W~k~g~~i~---------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      |.|++++..+.         .++.+.  ..+.|.|..+..+| |.|+|.|.|......
T Consensus       167 v~W~k~g~~~~~~~~~~~~~~~g~y~--~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~  221 (257)
T 3bn9_D          167 VSWNSGALTSGVHTFPAVLQSSGLYS--LSSVVTVPSSSLGT-QTYICNVNHKPSNTK  221 (257)
T ss_dssp             EEETTTTCCSSCEECCCEECTTSCEE--EEEECCCC--------CEEEEEEEGGGTEE
T ss_pred             EEEeeCCCcCCcEecCCeEcCCCCEE--EEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence            99999987532         111221  23467888887777 999999999765433

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=3.7e-13  Score=125.09  Aligned_cols=98  Identities=24%  Similarity=0.334  Sum_probs=86.8

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .+|.|...+.++.+.+|++++|.|.+.|.|.|.|.|+|++..+....++.+..   .++|.|.++..+|+|.|+|.|.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            57888888888999999999999999999999999999999988777777654   458999999999999999999999


Q ss_pred             CeeEEEEEEEEEecCCCCCCC
Q psy11143        398 LGEDVAEGYLTVTGENSVEPA  418 (940)
Q Consensus       398 ~G~~~~s~~L~V~~~~~~~~~  418 (940)
                      .|.....+.|.|...|..+..
T Consensus        86 ~g~~~~~~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDKPDPPAG  106 (114)
T ss_dssp             SCEEECCEEEEEECSCSCCCC
T ss_pred             CCcEEEEEEEEEECCCCCCCC
Confidence            999999999999987664333

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.47  E-value=1.3e-13  Score=125.64  Aligned_cols=91  Identities=26%  Similarity=0.512  Sum_probs=78.7

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC--eEEEe--eceEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEH--DGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~--~~~~~--~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      ||.|...|.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..+.....  +.+..  +...|.|.+++.+|+|.|+|.|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   84 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN   84 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEE
Confidence            67888889999999999999999999999999999999999976543  44443  335689999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy11143        121 SEGSAESVAMIRING  135 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~  135 (940)
                      ..|..+..+.|.|..
T Consensus        85 ~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           85 EFGSDSATVNIHIRS   99 (100)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEE
Confidence            999988888888753

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.47  E-value=2.5e-13  Score=144.77  Aligned_cols=171  Identities=14%  Similarity=0.234  Sum_probs=114.8

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Ee---ec------------CCCCeEEEe---eceEEEEccc
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NS---LD------------SDDHVTYEH---DGFVLVLNGV  106 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~---I~------------~~~~~~~~~---~gs~L~I~~v  106 (940)
                      .+...|..+.+.+|++++|.|.+. .+.+.|.|+|+.  ..   +.            ...++.+..   ....|.|.++
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence            455667888999999999999985 457899999853  11   10            123344332   1245899999


Q ss_pred             ccCCCeEEEEEEEeCC---CceEEEEEEEEec----ccCCeeEec-CCceeecCCCcEEEEEEeCCC-CCC-eEEEeeCC
Q psy11143        107 RESDAGVYNCVAQNSE---GSAESVAMIRING----HRAPRLVVK-PFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDE  176 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~---g~~~~~~~L~V~~----~~~P~~~~~-p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~g  176 (940)
                      +.+|+|.|.|.+.+..   ........|.|..    ..+|.+.+. +....+.+|+.++|.|.+.+. |.+ .|+|+++|
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  163 (252)
T 1oga_E           84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  163 (252)
T ss_dssp             CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            9999999999999862   1111234566654    134555543 444456679999999999984 654 99999999


Q ss_pred             eeccccCc--------------eEEeeeceEEEeecccC-CCceEEEEEEcCCccee
Q psy11143        177 AEFVEDRN--------------HKIHRTGSLRLYNIGPQ-DSGLYRCTASNLLGEDV  218 (940)
Q Consensus       177 ~~i~~~~~--------------~~~~~~~sL~I~~v~~~-DsG~YtC~a~N~~g~~s  218 (940)
                      ..+.....              ..+.....|.|...... +.|.|+|.+.|......
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            87754321              11122234777776654 57789999999765543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.47  E-value=2e-13  Score=145.48  Aligned_cols=165  Identities=16%  Similarity=0.250  Sum_probs=111.9

Q ss_pred             eCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC--Ceec------CC---------CC-ceEEeecCeE-EEEeeeccCC
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL------DS---------DD-HVTYEHDGFV-LVLNGVRESD  294 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~--g~~l------~~---------~~-~~~~~~~g~s-L~I~~v~~~D  294 (940)
                      ..|....+.+|++++|.|.+.+.+.+.+.|+|.  +...      ..         .. ++.+..++.. |.|.+++.+|
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~D   85 (253)
T 3to4_D            6 QNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQ   85 (253)
T ss_dssp             EECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSS
T ss_pred             eCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhh
Confidence            346678899999999999998888899999983  1110      00         01 3333322211 9999999999


Q ss_pred             CeEEEEEEEeCCCC------ceeEEEEEEee----ccCCeEEEc-CCceeecCCCeEEEEEeecC-cCCC-eEEEEeCCe
Q psy11143        295 AGVYNCVAQNSEGS------AESVAMIRING----HRAPRLVVK-PFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEA  361 (940)
Q Consensus       295 sG~YtC~A~N~~Gs------~~~s~~l~V~~----~~~P~i~~~-p~~~~v~~G~~vtL~C~v~g-~P~p-~i~W~k~g~  361 (940)
                      +|.|.|.+.+..+.      ......+.|..    ..+|.+... +....+..|+.++|.|.+.| .|.+ .++|+++|.
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~  165 (253)
T 3to4_D           86 GRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  165 (253)
T ss_dssp             CEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             CeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCE
Confidence            99999999976541      11223556642    245665543 33334446789999999998 6777 899999998


Q ss_pred             eeccCCcE--------------EEeeeceEEEecCCCCC-CeEEEEEEEeCC
Q psy11143        362 EFVEDRNH--------------KIHRTGSLRLYNIGPQD-SGLYRCTASNLL  398 (940)
Q Consensus       362 ~i~~~~~~--------------~i~~~~sL~I~~v~~~D-~G~YtC~A~N~~  398 (940)
                      .+......              .....+.|.|.....+| .|.|+|.|.|..
T Consensus       166 ~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          166 EVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             ECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            87542111              11223467888777777 779999999963

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.46  E-value=4.6e-13  Score=142.65  Aligned_cols=168  Identities=20%  Similarity=0.278  Sum_probs=111.0

Q ss_pred             EecCCceeecCCCcEEEEEEeCCCCCCeEEEeeC--Ceecc-----c----------cC-ceEEeeece--EEEeecccC
Q psy11143        142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFV-----E----------DR-NHKIHRTGS--LRLYNIGPQ  201 (940)
Q Consensus       142 ~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~--g~~i~-----~----------~~-~~~~~~~~s--L~I~~v~~~  201 (940)
                      ...|..+.+.+|++++|.|.+.+.+.+.+.|+|.  +....     .          .. ++.......  |.|.+++.+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~   84 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS   84 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence            3446678899999999999998888899999982  21110     0          01 333332222  999999999


Q ss_pred             CCceEEEEEEcCCc------ceeeeeeeeecC-----CCCeeee-CCCeeEEecCCeEEEEEEEee-eCCC-eEEEEECC
Q psy11143        202 DSGLYRCTASNLLG------EDVAEGYLTVTG-----APPIFIQ-RPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDG  267 (940)
Q Consensus       202 DsG~YtC~a~N~~g------~~s~s~~L~V~~-----~~p~~~~-~p~~~~v~~G~~v~L~C~v~G-~P~p-~ItW~k~g  267 (940)
                      |+|.|+|.+.+..+      .......|.|..     .+|.+.. .+....+..|+.++|.|.+.| +|.+ .++|+++|
T Consensus        85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g  164 (253)
T 3to4_D           85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  164 (253)
T ss_dssp             SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence            99999999987543      112233555542     2333332 223333445789999999999 6666 89999999


Q ss_pred             eecCCCCceEEe--------ecC-----eEEEEeeeccCC-CeEEEEEEEeCCCCc
Q psy11143        268 NSLDSDDHVTYE--------HDG-----FVLVLNGVRESD-AGVYNCVAQNSEGSA  309 (940)
Q Consensus       268 ~~l~~~~~~~~~--------~~g-----~sL~I~~v~~~D-sG~YtC~A~N~~Gs~  309 (940)
                      ..+.........        .++     ..|.|.....+| .|.|+|.|.|.....
T Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~  220 (253)
T 3to4_D          165 KEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (253)
T ss_dssp             EEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             EECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCC
Confidence            988653221100        122     237777777777 779999999975443

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.45  E-value=6.3e-13  Score=141.58  Aligned_cols=168  Identities=15%  Similarity=0.263  Sum_probs=114.8

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC--ee---c------------CCCCceEEee---cCeEEEEeeec
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NS---L------------DSDDHVTYEH---DGFVLVLNGVR  291 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g--~~---l------------~~~~~~~~~~---~g~sL~I~~v~  291 (940)
                      +...|....+.+|++++|.|.+. .+.+.+.|+++.  ..   +            ....++.+..   ...+|.|.+++
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            44557778899999999999985 457899999853  11   1            0124455442   12359999999


Q ss_pred             cCCCeEEEEEEEeCCC---CceeEEEEEEee----ccCCeEEEc-CCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCe
Q psy11143        292 ESDAGVYNCVAQNSEG---SAESVAMIRING----HRAPRLVVK-PFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEA  361 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~G---s~~~s~~l~V~~----~~~P~i~~~-p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~  361 (940)
                      .+|+|.|.|.+.|..+   .......+.|..    ..+|.+... +....+..|+.++|.|.+.|. |.+ .|.|+|+|.
T Consensus        85 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~  164 (252)
T 1oga_E           85 KNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  164 (252)
T ss_dssp             SCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             hhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCE
Confidence            9999999999998621   111223466653    246776654 444455679999999999986 755 999999998


Q ss_pred             eeccCCcE--------------EEeeeceEEEecCCCC-CCeEEEEEEEeCCee
Q psy11143        362 EFVEDRNH--------------KIHRTGSLRLYNIGPQ-DSGLYRCTASNLLGE  400 (940)
Q Consensus       362 ~i~~~~~~--------------~i~~~~sL~I~~v~~~-D~G~YtC~A~N~~G~  400 (940)
                      .+......              .....+.|.|...... +.|.|+|.|.|....
T Consensus       165 ~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          165 EVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            77543211              1111234777766554 678999999997653

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.45  E-value=6.4e-13  Score=140.14  Aligned_cols=167  Identities=18%  Similarity=0.302  Sum_probs=111.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Ee---e------------cCCCCeEEEe---eceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NS---L------------DSDDHVTYEH---DGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~---I------------~~~~~~~~~~---~gs~L~I~~v~  107 (940)
                      +...|..+.+.+|+.|+|.|.+. .+.+.|.|+|++  ..   +            ....++.+..   ....|.|.+++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            34567788999999999999985 467899999863  11   1            0123344432   23468999999


Q ss_pred             cCCCeEEEEEEEeCCC---ce--EEEEEEEEecc----cCCeeEe-cCCceeecCCCcEEEEEEeCCC-CCC-eEEEeeC
Q psy11143        108 ESDAGVYNCVAQNSEG---SA--ESVAMIRINGH----RAPRLVV-KPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKD  175 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g---~~--~~~~~L~V~~~----~~P~~~~-~p~~~~v~~Ge~vtL~C~v~g~-P~p-~ItW~k~  175 (940)
                      .+|+|.|.|.+.+..+   ..  .....|.|...    .+|.+.+ .+....+.+|+.++|.|.+.|. |.+ .|+|+++
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  160 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  160 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence            9999999999998742   11  12345667652    2455544 3444556789999999999985 655 9999999


Q ss_pred             CeeccccCce----EEeeece------EEEeecccCC-CceEEEEEEcCCc
Q psy11143        176 EAEFVEDRNH----KIHRTGS------LRLYNIGPQD-SGLYRCTASNLLG  215 (940)
Q Consensus       176 g~~i~~~~~~----~~~~~~s------L~I~~v~~~D-sG~YtC~a~N~~g  215 (940)
                      |..+......    ....+++      |.|......| .|.|+|.|.|...
T Consensus       161 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          161 GKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             CEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            9887543211    1122233      4444444444 5789999999743

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.45  E-value=5.6e-13  Score=140.59  Aligned_cols=165  Identities=19%  Similarity=0.307  Sum_probs=111.6

Q ss_pred             eeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC--eec---------------CCCCceEEee---cCeEEEEeeecc
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL---------------DSDDHVTYEH---DGFVLVLNGVRE  292 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g--~~l---------------~~~~~~~~~~---~g~sL~I~~v~~  292 (940)
                      ...|....+.+|++++|.|.+. .+.+.+.|+|++  ..+               ....++.+..   ...+|.|.+++.
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             ccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            3456778899999999999985 467899999863  111               0123444432   224699999999


Q ss_pred             CCCeEEEEEEEeCCCC-----ceeEEEEEEeec----cCCeEEEc-CCceeecCCCeEEEEEeecCc-CCC-eEEEEeCC
Q psy11143        293 SDAGVYNCVAQNSEGS-----AESVAMIRINGH----RAPRLVVK-PFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDE  360 (940)
Q Consensus       293 ~DsG~YtC~A~N~~Gs-----~~~s~~l~V~~~----~~P~i~~~-p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g  360 (940)
                      +|+|.|.|.+.|..+.     ......|.|...    .+|.+... |....+..|+.++|.|.+.|. |.+ .|.|+++|
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  161 (238)
T 1bec_A           82 SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  161 (238)
T ss_dssp             GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETT
T ss_pred             ccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECC
Confidence            9999999999987531     112235666542    36766543 444556789999999999986 765 99999999


Q ss_pred             eeeccCCcE----EEeeece------EEEecCCCCC-CeEEEEEEEeCC
Q psy11143        361 AEFVEDRNH----KIHRTGS------LRLYNIGPQD-SGLYRCTASNLL  398 (940)
Q Consensus       361 ~~i~~~~~~----~i~~~~s------L~I~~v~~~D-~G~YtC~A~N~~  398 (940)
                      ..+..+...    ....+++      |.|......| .|.|+|.|.|..
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          162 KEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             EECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            887654221    1122333      3343333333 688999999963

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.44  E-value=6.4e-13  Score=139.65  Aligned_cols=167  Identities=14%  Similarity=0.211  Sum_probs=110.2

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--Ee---ec-------------CCCCeEEEe----eceEEEE
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NS---LD-------------SDDHVTYEH----DGFVLVL  103 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~~---I~-------------~~~~~~~~~----~gs~L~I  103 (940)
                      +...|..+.+.+|++|+|.|.+.+.  +.+.+.|||..  ..   +.             ...++.+..    ....|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            3455778899999999999999764  56789999852  11   10             112333332    2246899


Q ss_pred             cccccCCCeEEEEEEEeC--CCc-e-EEEEEEEEec---------ccCCeeEecCCceeecCCCcEEEEEEeCCC-CC-C
Q psy11143        104 NGVRESDAGVYNCVAQNS--EGS-A-ESVAMIRING---------HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-P  168 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~--~g~-~-~~~~~L~V~~---------~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~-p  168 (940)
                      .+++.+|+|.|.|.+.+.  ... . ...+.|.|..         .+.|.+. .+....+.+|+.++|.|.+.+. |. +
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~-~p~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIF-LPSVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEE-CCCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEE-CCCchhhccCCcceEEEEEeeecCCCe
Confidence            999999999999999874  111 1 1234677752         1222222 2444456679999999999874 75 5


Q ss_pred             eEEEee-CCeeccccCc-------eEEeeeceEEEeecccCCCceEEEEEEcCCcce
Q psy11143        169 RISWSK-DEAEFVEDRN-------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  217 (940)
Q Consensus       169 ~ItW~k-~g~~i~~~~~-------~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~  217 (940)
                      .|+|++ +|..+.....       ........|.|..... + |.|+|.+.|.....
T Consensus       163 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG  217 (230)
T ss_dssp             EEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred             EEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence            999999 7766643210       1112234688888775 4 99999999976643

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.43  E-value=6.4e-13  Score=140.52  Aligned_cols=175  Identities=15%  Similarity=0.244  Sum_probs=115.2

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC----CCeEEEEECC--E---ee---c----------------CCCCeEEEee----c
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDG--N---SL---D----------------SDDHVTYEHD----G   98 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P----~p~V~W~kdg--~---~I---~----------------~~~~~~~~~~----g   98 (940)
                      +|..+.+.+|++|+|.|.+.+.+    ...+.|||..  .   .+   .                ...++.+..+    .
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   85 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL   85 (239)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence            34567799999999999998765    3489999842  1   11   1                0123333321    2


Q ss_pred             eEEEEcccccCCCeEEEEEEEeCCCc-----------e--EEEEEEEEec--ccCCeeEecCCceeecCCCcEEEEEEeC
Q psy11143         99 FVLVLNGVRESDAGVYNCVAQNSEGS-----------A--ESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPD  163 (940)
Q Consensus        99 s~L~I~~v~~~DsG~YtC~a~n~~g~-----------~--~~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C~v~  163 (940)
                      ..|.|.+++.+|+|.|.|.+.+..+.           .  .....|.|..  ...|.+...+....+..|+.++|.|.+.
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  165 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  165 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEe
Confidence            35899999999999999999875320           1  1123556642  2346666555555567899999999998


Q ss_pred             C-CCCC-eEEEeeCCeeccc-------cCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        164 G-EPLP-RISWSKDEAEFVE-------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       164 g-~P~p-~ItW~k~g~~i~~-------~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      + .|.+ .+.|++++..+..       .....+...+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       166 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  236 (239)
T 3tv3_H          166 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  236 (239)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             eEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence            7 5544 5899998864321       111122233468899988888 99999999988776666665543

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.43  E-value=4.3e-13  Score=141.83  Aligned_cols=172  Identities=15%  Similarity=0.250  Sum_probs=116.0

Q ss_pred             CCeeEEecCCeEEEEEEEeeeCC----CeEEEEECC--ee---c---C----------------CCCceEEeec----Ce
Q psy11143        236 PVSTTYSTGSTSRITCLVEGHPL----PQMTWFHDG--NS---L---D----------------SDDHVTYEHD----GF  283 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~P~----p~ItW~k~g--~~---l---~----------------~~~~~~~~~~----g~  283 (940)
                      +....+.+|++++|.|.+.+.+.    ..+.|++..  ..   +   .                ...++.+..+    ..
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            44567889999999999988653    489999842  11   1   0                1134444322    23


Q ss_pred             EEEEeeeccCCCeEEEEEEEeCCCC-------------ceeEEEEEEe--eccCCeEEEcCCceeecCCCeEEEEEeecC
Q psy11143        284 VLVLNGVRESDAGVYNCVAQNSEGS-------------AESVAMIRIN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDG  348 (940)
Q Consensus       284 sL~I~~v~~~DsG~YtC~A~N~~Gs-------------~~~s~~l~V~--~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g  348 (940)
                      +|.|.+++.+|+|.|.|.+.+..+.             ......+.|.  ...+|.+...+....+..|+.++|.|.+.+
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~  166 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD  166 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEee
Confidence            5999999999999999999876321             1122345553  234666665555555667999999999998


Q ss_pred             -cCCC-eEEEEeCCeeec---------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        349 -EPLP-RISWSKDEAEFV---------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       349 -~P~p-~i~W~k~g~~i~---------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                       .|.+ .+.|++++..+.         .+..+.  ..+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       167 ~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  236 (239)
T 3tv3_H          167 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYS--LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  236 (239)
T ss_dssp             EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEE--EEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EeCCCeEEEEEECCccCceEecCceECCCCCEE--EEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence             4545 589999886321         122222  23578899988888 99999999998877766666543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=118.48  Aligned_cols=92  Identities=26%  Similarity=0.465  Sum_probs=83.2

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .+|.+...+.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+...+   +|.|.++..+|+|.|+|.|.|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   86 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY   86 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeC
Confidence            4688888888899999999999999999999999999999999877777765533   7999999999999999999999


Q ss_pred             CeeEEEEEEEEEecC
Q psy11143        398 LGEDVAEGYLTVTGE  412 (940)
Q Consensus       398 ~G~~~~s~~L~V~~~  412 (940)
                      .|..+..+.|.|++.
T Consensus        87 ~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           87 KGEASDYATLDVTGG  101 (103)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             CCcEEEEEEEEEECC
Confidence            999999999999875

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.42  E-value=1.2e-12  Score=148.35  Aligned_cols=159  Identities=14%  Similarity=0.156  Sum_probs=112.3

Q ss_pred             EecCCeEEEEEEEeee-CCC---eEEEEECCeecCCCCc---eEE----eecCeEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        241 YSTGSTSRITCLVEGH-PLP---QMTWFHDGNSLDSDDH---VTY----EHDGFVLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~-P~p---~ItW~k~g~~l~~~~~---~~~----~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      +..|++++|.|.+.|. |.|   .|+|++++..+.....   ...    ......|.|..+..+|.|.|+|.+.|..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            7889999999999987 333   7999999876532110   000    0112249999999999999999999987754


Q ss_pred             eeEEEEEE--eeccCCeEEEcCCceeecCCCeEEEEEeecCcC--CCeEEEEeCCeeeccCCcE--EEee------eceE
Q psy11143        310 ESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKDEAEFVEDRNH--KIHR------TGSL  377 (940)
Q Consensus       310 ~~s~~l~V--~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~g~~i~~~~~~--~i~~------~~sL  377 (940)
                      .....+.+  ....+|.+.+.+.......|+.++|.|.+.|.+  .+.|+|+|+|..+......  ....      .+.|
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L  339 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKL  339 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEE
Confidence            44333332  445688888777666556789999999999863  3499999999876432111  1112      2357


Q ss_pred             EEecCCCCCCeEEEEEEEeCCe
Q psy11143        378 RLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       378 ~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      .|.....+|.|.|+|.|.|..-
T Consensus       340 ~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          340 NVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEcHHHhCCCCcEEEEEEeCCC
Confidence            7777777789999999999643

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.41  E-value=3.3e-14  Score=147.79  Aligned_cols=165  Identities=18%  Similarity=0.252  Sum_probs=110.4

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeCC---CeEEEEECCeecCCCCc--------eEEeecCeEEEEeeeccCCCeEEEE
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNSLDSDDH--------VTYEHDGFVLVLNGVRESDAGVYNC  300 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P~---p~ItW~k~g~~l~~~~~--------~~~~~~g~sL~I~~v~~~DsG~YtC  300 (940)
                      +...|....+.+|++++|.|.+.|.++   +.|.|  ++..+.....        -.+. ....|.|.++..+|+|.|+|
T Consensus         7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~-~~~~L~I~~~~~~D~g~Y~C   83 (214)
T 1ow0_A            7 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYS-VSSVLPGCAEPWNHGKTFTC   83 (214)
T ss_dssp             EEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCC-EEEECTTTHHHHHHTCEEEE
T ss_pred             EEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEE-EEEEEEEeHHHcCCCCeEEE
Confidence            344566677889999999999998754   68999  4444321100        0001 12348888888999999999


Q ss_pred             EEEeCCCCceeEEEEEE-eeccCCeEEEcC-CceeecCCCeEEEEEeecCc-CC-CeEEEEeCCeeeccCCc----EEEe
Q psy11143        301 VAQNSEGSAESVAMIRI-NGHRAPRLVVKP-FDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEAEFVEDRN----HKIH  372 (940)
Q Consensus       301 ~A~N~~Gs~~~s~~l~V-~~~~~P~i~~~p-~~~~v~~G~~vtL~C~v~g~-P~-p~i~W~k~g~~i~~~~~----~~i~  372 (940)
                      .|.|..+.......+.+ ....+|.+.+.+ ....+..|+.++|.|.+.|. |. +.|+|+|+|..+.....    ....
T Consensus        84 ~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~  163 (214)
T 1ow0_A           84 TAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQE  163 (214)
T ss_dssp             EECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEEC
T ss_pred             EEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCccc
Confidence            99998876544444432 345678775544 33346789999999999985 54 49999999988765421    1223


Q ss_pred             ---eeceE------EEecCCCCCCeEEEEEEEeCCe
Q psy11143        373 ---RTGSL------RLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       373 ---~~~sL------~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                         .++++      .|......+.|.|+|.|.|..-
T Consensus       164 ~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          164 PSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             SCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             ccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence               34443      3433333458999999999754

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.41  E-value=1.3e-12  Score=148.06  Aligned_cols=167  Identities=16%  Similarity=0.178  Sum_probs=114.9

Q ss_pred             EeCCCcEE-EecCCeEEEEEEeecc---CC-CeEEEEECCEeecCCCC---eEEE----eeceEEEEcccccCCCeEEEE
Q psy11143         49 IQRPVSTT-YSTGSTSRITCLVEGH---PL-PQMTWFHDGNSLDSDDH---VTYE----HDGFVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        49 ~~~p~~~~-V~eGesv~L~C~v~g~---P~-p~V~W~kdg~~I~~~~~---~~~~----~~gs~L~I~~v~~~DsG~YtC  116 (940)
                      ...|.... +.+|++++|.|.+.|.   |. ..|+|+|++..+.....   .+..    .....|.|..++.+|+|.|+|
T Consensus       171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C  250 (376)
T 2aty_A          171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC  250 (376)
T ss_pred             EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEE
Confidence            33444344 7899999999999987   32 37999999976532110   0111    122357999999999999999


Q ss_pred             EEEeCCCceEEEEEEEE--ecccCCeeEecCCceeecCCCcEEEEEEeCCC-C-CCeEEEeeCCeeccccCce-------
Q psy11143        117 VAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-P-LPRISWSKDEAEFVEDRNH-------  185 (940)
Q Consensus       117 ~a~n~~g~~~~~~~L~V--~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P-~p~ItW~k~g~~i~~~~~~-------  185 (940)
                      .+.+..+.......+.+  ....+|.+.+.+....+.+|+.++|.|.+.|. | .+.|+|+++|..+......       
T Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~d  330 (376)
T 2aty_A          251 RVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTN  330 (376)
T ss_pred             EEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCC
Confidence            99998775444333322  33446777777766666679999999999985 3 4589999999876432111       


Q ss_pred             -EEeeeceEEEeecccCCCceEEEEEEcCCc
Q psy11143        186 -KIHRTGSLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       186 -~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                       .+.....|.|.....+|.|.|+|.|.|..-
T Consensus       331 gty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          331 ESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             CCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence             112223477777777789999999998654

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.41  E-value=6e-13  Score=139.72  Aligned_cols=174  Identities=13%  Similarity=0.235  Sum_probs=109.8

Q ss_pred             CCcEEEecCCeEEEEEEeeccC--CC--eEEEEECC--E---ee-----c-----------CCCCeEEEee----ceEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHP--LP--QMTWFHDG--N---SL-----D-----------SDDHVTYEHD----GFVLV  102 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P--~p--~V~W~kdg--~---~I-----~-----------~~~~~~~~~~----gs~L~  102 (940)
                      |..+.+.+|++|+|.|.+.+.+  ..  .|.|||..  .   .+     .           ...++.+..+    ...|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT   86 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence            3456789999999999997632  23  44999832  1   11     0           0124444322    23589


Q ss_pred             EcccccCCCeEEEEEEEeCCC--------ceEEEEEEEEec--ccCCeeEecCCceeecCCCcEEEEEEeCCC-C-CCeE
Q psy11143        103 LNGVRESDAGVYNCVAQNSEG--------SAESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-P-LPRI  170 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g--------~~~~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P-~p~I  170 (940)
                      |.+++.+|+|.|.|.+.+..+        .......|.|..  ...|.+...+....+..|+.++|.|.+.+. | ...+
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  166 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  166 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEE
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEE
Confidence            999999999999999987631        111234566642  234666544445566789999999999874 4 3368


Q ss_pred             EEeeCCeeccc-------cCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        171 SWSKDEAEFVE-------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       171 tW~k~g~~i~~-------~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      .|++++..+..       .....+...+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       167 ~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          167 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             EEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence            89998864321       111122233468899998888 99999999988777766666554

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.41  E-value=4.8e-13  Score=140.46  Aligned_cols=171  Identities=13%  Similarity=0.244  Sum_probs=110.8

Q ss_pred             CeeEEecCCeEEEEEEEeeeC--CCeE--EEEECC--ee---c-----C-----------CCCceEEeecC----eEEEE
Q psy11143        237 VSTTYSTGSTSRITCLVEGHP--LPQM--TWFHDG--NS---L-----D-----------SDDHVTYEHDG----FVLVL  287 (940)
Q Consensus       237 ~~~~v~~G~~v~L~C~v~G~P--~p~I--tW~k~g--~~---l-----~-----------~~~~~~~~~~g----~sL~I  287 (940)
                      ....+.+|++++|.|.+.+.+  ...+  .|++..  ..   +     .           ...++.+..+.    .+|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (232)
T 3qhz_H            8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM   87 (232)
T ss_dssp             CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence            346788999999999998642  2444  999842  11   1     0           11344444322    35999


Q ss_pred             eeeccCCCeEEEEEEEeCCC--------CceeEEEEEEe--eccCCeEEEcCCceeecCCCeEEEEEeecCcCC-C-eEE
Q psy11143        288 NGVRESDAGVYNCVAQNSEG--------SAESVAMIRIN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-P-RIS  355 (940)
Q Consensus       288 ~~v~~~DsG~YtC~A~N~~G--------s~~~s~~l~V~--~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~-p-~i~  355 (940)
                      .+++.+|+|.|.|.+.+..+        .......+.|.  ...+|.+...+....+..|+.++|.|.+.+.++ + .+.
T Consensus        88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~  167 (232)
T 3qhz_H           88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  167 (232)
T ss_dssp             CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEE
T ss_pred             CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEE
Confidence            99999999999999997631        12223456664  235666664444445667999999999998544 2 688


Q ss_pred             EEeCCeeec---------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        356 WSKDEAEFV---------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       356 W~k~g~~i~---------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      |++++..+.         .+..+.  ..+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       168 W~~~g~~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          168 WNSGALTSGVHTFPAVLQSSGLYS--LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             EGGGTBCTTEEECCCEECTTSCEE--EEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEECCEecceeeccceeCCCCCEE--EEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence            999886321         122222  23578899998888 99999999998887777666543

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.41  E-value=4.2e-14  Score=147.00  Aligned_cols=167  Identities=18%  Similarity=0.259  Sum_probs=110.4

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccCC---CeEEEEECCEeecCC--------CCeEEEeeceEEEEcccccCCCeEEE
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNSLDSD--------DHVTYEHDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P~---p~V~W~kdg~~I~~~--------~~~~~~~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      .+...|....+.+|+.++|.|.+.+.++   +.|.|  ++..+...        ...++. ....|.|.+++.+|+|.|+
T Consensus         6 v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~-~~~~L~I~~~~~~D~g~Y~   82 (214)
T 1ow0_A            6 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYS-VSSVLPGCAEPWNHGKTFT   82 (214)
T ss_dssp             CEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCC-EEEECTTTHHHHHHTCEEE
T ss_pred             EEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEE-EEEEEEEeHHHcCCCCeEE
Confidence            3345578888899999999999998754   68999  44433211        000111 2235789999999999999


Q ss_pred             EEEEeCCCceEEEEEEEE-ecccCCeeEecC-CceeecCCCcEEEEEEeCC-CCC-CeEEEeeCCeeccccCc----eEE
Q psy11143        116 CVAQNSEGSAESVAMIRI-NGHRAPRLVVKP-FDMRAPAGSSVEIPCKPDG-EPL-PRISWSKDEAEFVEDRN----HKI  187 (940)
Q Consensus       116 C~a~n~~g~~~~~~~L~V-~~~~~P~~~~~p-~~~~v~~Ge~vtL~C~v~g-~P~-p~ItW~k~g~~i~~~~~----~~~  187 (940)
                      |.+.|..+.......+.+ ....+|.+.+.+ ....+..|+.++|.|.+.| +|. +.|+|+++|..+.....    ...
T Consensus        83 C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  162 (214)
T 1ow0_A           83 CTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQ  162 (214)
T ss_dssp             EEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEE
T ss_pred             EEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcc
Confidence            999998765444344432 233456665443 3334678999999999998 454 49999999988765421    122


Q ss_pred             e---eece------EEEeecccCCCceEEEEEEcCCcc
Q psy11143        188 H---RTGS------LRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       188 ~---~~~s------L~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                      .   .+++      |.|......+.|.|+|.|.|....
T Consensus       163 ~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          163 EPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             CSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             cccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            2   3333      334443334589999999997543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=5.6e-13  Score=120.58  Aligned_cols=93  Identities=30%  Similarity=0.551  Sum_probs=83.8

Q ss_pred             ccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeec-cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       320 ~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~-~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      ..+|.+...|....+.+|++++|.|.+.|.|.|.|.|+|++..+. ...++.+..+++|.|.++..+|+|.|+|.|.|..
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~   85 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS   85 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSS
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCC
Confidence            357888888888899999999999999999999999999998886 3456666677899999999999999999999999


Q ss_pred             eeEEEEEEEEEecC
Q psy11143        399 GEDVAEGYLTVTGE  412 (940)
Q Consensus       399 G~~~~s~~L~V~~~  412 (940)
                      |....++.|.|.++
T Consensus        86 g~~~~~~~l~V~~~   99 (100)
T 2edj_A           86 GETSWSAVLDVTES   99 (100)
T ss_dssp             CCCBCCEEEEEESC
T ss_pred             CCEEEEEEEEEecC
Confidence            99999999999875

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.40  E-value=1.4e-12  Score=117.38  Aligned_cols=91  Identities=20%  Similarity=0.299  Sum_probs=80.5

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.|...+.+..+.+|++++|.|.+.|.|.|.|.|+|++..+....++.+..    ..+|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            46888888888999999999999999999999999999999988766655432    23799999999999999999999


Q ss_pred             CCeeEEEEEEEEEec
Q psy11143        397 LLGEDVAEGYLTVTG  411 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~  411 (940)
                      ..|....++.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999999999999975

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=1.6e-12  Score=136.61  Aligned_cols=169  Identities=19%  Similarity=0.286  Sum_probs=110.6

Q ss_pred             eEecCCceeecCCCcEEEEEEeCCC--CCCeEEEeeCC--eec---c-------------ccCceEEee-----eceEEE
Q psy11143        141 LVVKPFDMRAPAGSSVEIPCKPDGE--PLPRISWSKDE--AEF---V-------------EDRNHKIHR-----TGSLRL  195 (940)
Q Consensus       141 ~~~~p~~~~v~~Ge~vtL~C~v~g~--P~p~ItW~k~g--~~i---~-------------~~~~~~~~~-----~~sL~I  195 (940)
                      +...|..+.+.+|++++|.|.+.+.  +.+.+.|++..  ..+   .             ...++.+..     ..+|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            3445667889999999999999874  56789999842  211   0             123444432     237999


Q ss_pred             eecccCCCceEEEEEEcC--Cc--ceeeeeeeeecC--------CCCee-eeCCCeeEEecCCeEEEEEEEeee-CC-Ce
Q psy11143        196 YNIGPQDSGLYRCTASNL--LG--EDVAEGYLTVTG--------APPIF-IQRPVSTTYSTGSTSRITCLVEGH-PL-PQ  260 (940)
Q Consensus       196 ~~v~~~DsG~YtC~a~N~--~g--~~s~s~~L~V~~--------~~p~~-~~~p~~~~v~~G~~v~L~C~v~G~-P~-p~  260 (940)
                      .+++.+|+|.|.|.+.+.  ..  .....+.|.|..        .+|.. ...+....+..|+.++|.|.+.|. |. +.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~  163 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR  163 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence            999999999999999874  11  112334566651        12222 222333445578999999999986 75 59


Q ss_pred             EEEEE-CCeecCCCCc-eEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCcee
Q psy11143        261 MTWFH-DGNSLDSDDH-VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAES  311 (940)
Q Consensus       261 ItW~k-~g~~l~~~~~-~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~  311 (940)
                      |+|++ +|..+..... .....++     ..|.|..... + |.|+|.|.|..+....
T Consensus       164 v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~~  219 (230)
T 1ypz_F          164 VYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGGA  219 (230)
T ss_dssp             EEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTTS
T ss_pred             EEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCce
Confidence            99999 8877653211 1112222     2477877765 4 9999999998875443

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.40  E-value=6.7e-12  Score=131.67  Aligned_cols=174  Identities=13%  Similarity=0.302  Sum_probs=115.9

Q ss_pred             CCCcEEEecCCeEEEEEEeec--cCCCeEEEEECC--E---ee---c-----------CCCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDG--N---SL---D-----------SDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kdg--~---~I---~-----------~~~~~~~~~~----gs~L~I~~  105 (940)
                      +|..+.+.+|++|+|.|.+.+  .+...+.|||..  .   .+   .           ...++.+..+    ...|.|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (230)
T 3n9g_H            6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS   85 (230)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            344678999999999999975  234589999732  1   11   0           0124444322    23489999


Q ss_pred             cccCCCeEEEEEEEeCC-----CceE---EEEEEEEec--ccCCeeEecCCceeecCCCcEEEEEEeCC-CC-CCeEEEe
Q psy11143        106 VRESDAGVYNCVAQNSE-----GSAE---SVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EP-LPRISWS  173 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~-----g~~~---~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P-~p~ItW~  173 (940)
                      ++.+|+|.|.|.+.+..     +...   ..+.|.|..  ...|.+...+....+.+|+.++|.|.+.+ .| .+.+.| 
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W-  164 (230)
T 3n9g_H           86 LRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  164 (230)
T ss_dssp             CCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred             CChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence            99999999999998754     1111   134566643  23455554444555678999999999987 44 347999 


Q ss_pred             eCCeecccc---------CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecC
Q psy11143        174 KDEAEFVED---------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  227 (940)
Q Consensus       174 k~g~~i~~~---------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~  227 (940)
                       ++..+...         ....+...+.|.|.....+| |.|+|.|.+..+.......+.|..
T Consensus       165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~  225 (230)
T 3n9g_H          165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS  225 (230)
T ss_dssp             -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred             -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence             44443211         11122233478999999999 999999999888777777776653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=7.3e-13  Score=123.88  Aligned_cols=110  Identities=27%  Similarity=0.529  Sum_probs=92.4

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC-CCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~-~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...|....+.+|+.++|.|.+.|.|.+.|.|+|+|..+.. ..+..+..++ .|.|.+++.+|+|.|+|.|.|..
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~-~L~i~~v~~~D~G~Y~C~a~n~~   85 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG-VLQIRYAKLGDTGRYTCIASTPS   85 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT-EEEEESCCGGGCCCEEEEEECSS
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC-EEEEccCCcCCCEEEEEEEEcCC
Confidence            478888889999999999999999999999999999999998864 3344444444 57999999999999999999999


Q ss_pred             CceEEEEEEEEecccCCeeEecCCceeecCCC
Q psy11143        123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGS  154 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge  154 (940)
                      |.....+.|.|...+.|.+...+.+..+.+|.
T Consensus        86 g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G~  117 (118)
T 2eo9_A           86 GEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA  117 (118)
T ss_dssp             CEEEEECCEEEECCSCCCCCCCCCCCCCCCCC
T ss_pred             CcEEEEEEEEEEeCCCCccCCCCCCCccCCCC
Confidence            99888888999877667666667777777764

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.39  E-value=2e-12  Score=120.98  Aligned_cols=94  Identities=23%  Similarity=0.445  Sum_probs=83.7

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeeec----eEEEecCCCCCCeEEEEEEE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRTG----SLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~~----sL~I~~v~~~D~G~YtC~A~  395 (940)
                      .+|.|+..|.++.+.+|++++|.|.+.|.|.|.|.|+|++..+.. ..++.+..++    +|.|.+++.+|+|.|+|.|.
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   93 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV   93 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEE
Confidence            578888889999999999999999999999999999999998874 4566665443    79999999999999999999


Q ss_pred             eCCeeEEEEEEEEEecCCC
Q psy11143        396 NLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       396 N~~G~~~~s~~L~V~~~~~  414 (940)
                      |..|.....+.|.|..+|.
T Consensus        94 N~~G~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           94 NEAGVTTCNTRLDVTARPN  112 (116)
T ss_dssp             ETTEEEEEEEEEEEECCSC
T ss_pred             cCCCeEEEEEEEEEeCCCC
Confidence            9999999999999998764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.39  E-value=3e-12  Score=115.19  Aligned_cols=91  Identities=27%  Similarity=0.438  Sum_probs=82.5

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .+|.+...+.+..+.+|++++|.|.+.|.|.|.+.|+|++..+....++.+...+   +|.|.++..+|+|.|+|.|.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            4678888888889999999999999999999999999999999877777776554   7999999999999999999999


Q ss_pred             CeeEEEEEEEEEec
Q psy11143        398 LGEDVAEGYLTVTG  411 (940)
Q Consensus       398 ~G~~~~s~~L~V~~  411 (940)
                      .|....++.|.|++
T Consensus        85 ~g~~~~~~~l~V~~   98 (99)
T 3puc_A           85 AGSVSSSCKLTIKA   98 (99)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCcEeEEEEEEEEe
Confidence            99999999999874

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.38  E-value=7e-13  Score=121.53  Aligned_cols=101  Identities=29%  Similarity=0.525  Sum_probs=74.3

Q ss_pred             EEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEE
Q psy11143         37 DLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        37 ~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC  116 (940)
                      .+.|.+..+|.+...+....+.+|+.++|.|.+.|.|.+.|.|+|++..+.......+...+..|.|.+++.+|+|.|+|
T Consensus         2 ~~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   81 (108)
T 3kvq_A            2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC   81 (108)
T ss_dssp             ---------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred             ceeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEE
Confidence            35567778899999999999999999999999999999999999999998776666666666678999999999999999


Q ss_pred             EEEeCCCceEEEEEEEEeccc
Q psy11143        117 VAQNSEGSAESVAMIRINGHR  137 (940)
Q Consensus       117 ~a~n~~g~~~~~~~L~V~~~~  137 (940)
                      .|.|..|.....+.|.|.+.+
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           82 QACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEC----CEEEEEEEEEEC--
T ss_pred             EEEeCCCceEEEEEEEEeCCC
Confidence            999999999888888887643

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.38  E-value=4.9e-12  Score=134.81  Aligned_cols=176  Identities=13%  Similarity=0.242  Sum_probs=112.5

Q ss_pred             eCCCcEEEecCCeEEEEEEeec--cCCCeEEEEECC--E---ee---c-----------CCCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDG--N---SL---D-----------SDDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kdg--~---~I---~-----------~~~~~~~~~~----gs~L~I~  104 (940)
                      .+|..+.+.+|++|+|.|.+.+  .+...+.|||..  .   .+   .           ...++.+..+    ...|.|.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            4556788999999999999975  234689999742  1   11   0           1134444322    2358999


Q ss_pred             ccccCCCeEEEEEEEeCCC--------------------c--eEEEEEEEEec--ccCCeeEecCCceeecCCCcEEEEE
Q psy11143        105 GVRESDAGVYNCVAQNSEG--------------------S--AESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPC  160 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~~g--------------------~--~~~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C  160 (940)
                      +++.+|+|.|.|.+.+..+                    .  ....+.|.|..  ...|.+...+....+..|+.++|.|
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C  163 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  163 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred             CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence            9999999999999987421                    0  11134566652  2345665555555566799999999


Q ss_pred             EeCC-CC-CCeEEEeeCCeeccc-------cCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        161 KPDG-EP-LPRISWSKDEAEFVE-------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       161 ~v~g-~P-~p~ItW~k~g~~i~~-------~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      .+.+ .| ...++|++++..+..       .........+.|.|......| |.|+|.|.|..+.......+.+.
T Consensus       164 ~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          164 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred             EEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence            9987 45 457999998764321       111122233468888888888 99999999987776665555544

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.37  E-value=2e-12  Score=116.67  Aligned_cols=92  Identities=28%  Similarity=0.448  Sum_probs=79.1

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcE--EEeeec--eEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH--KIHRTG--SLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~--~i~~~~--sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.+...|....+.+|++++|.|.+.|.|.|.|.|+|++..+....+.  .....+  +|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            4677777788889999999999999999999999999999988765432  222333  899999999999999999999


Q ss_pred             CCeeEEEEEEEEEecC
Q psy11143        397 LLGEDVAEGYLTVTGE  412 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~~  412 (940)
                      ..|..+.++.|.|.+.
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence            9999999999999864

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.37  E-value=3.5e-12  Score=114.84  Aligned_cols=91  Identities=29%  Similarity=0.513  Sum_probs=79.4

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC-cEEEeeec---eEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKIHRTG---SLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~-~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.+...+....+.+|++++|.|.+.|.|.|.|.|+|++..+.... ++.+..++   +|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            46888888888899999999999999999999999999999886554 34443333   699999999999999999999


Q ss_pred             CCeeEEEEEEEEEec
Q psy11143        397 LLGEDVAEGYLTVTG  411 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~  411 (940)
                      ..|....++.|.|++
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999999999999975

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.37  E-value=2.7e-12  Score=116.59  Aligned_cols=94  Identities=23%  Similarity=0.501  Sum_probs=82.6

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEE
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~  119 (940)
                      +..+|.+...+....+.+|+.+.|.|.+.|.|.|.|.|+|++..+....+..+...+  ..|.|.+++.+|+|.|+|.|.
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            345688888899999999999999999999999999999999999877777666433  468999999999999999999


Q ss_pred             eCCCceEEEEEEEEec
Q psy11143        120 NSEGSAESVAMIRING  135 (940)
Q Consensus       120 n~~g~~~~~~~L~V~~  135 (940)
                      |..|.....+.|.|.+
T Consensus        85 N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           85 NYKGEASDYATLDVTG  100 (103)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCcEEEEEEEEEEC
Confidence            9999988888888865

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=3.2e-12  Score=118.75  Aligned_cols=95  Identities=20%  Similarity=0.355  Sum_probs=82.5

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe--eceEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--DGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~--~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+|.|...|..+.+.+|+.++|.|.+.|.|.+.|.|+|++..+....++.+..  ....|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            47888888999999999999999999999999999999999988766666653  2456899999999999999999999


Q ss_pred             CCceEEEEEEEEecccC
Q psy11143        122 EGSAESVAMIRINGHRA  138 (940)
Q Consensus       122 ~g~~~~~~~L~V~~~~~  138 (940)
                      .|.....+.|.|...+.
T Consensus        86 ~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             SCEEECCEEEEEECSCS
T ss_pred             CCcEEEEEEEEEECCCC
Confidence            99888888888876543

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.37  E-value=4.7e-12  Score=132.82  Aligned_cols=171  Identities=13%  Similarity=0.306  Sum_probs=116.0

Q ss_pred             CCeeEEecCCeEEEEEEEee--eCCCeEEEEECC--ee---c---C-----------CCCceEEeecC----eEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDG--NS---L---D-----------SDDHVTYEHDG----FVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G--~P~p~ItW~k~g--~~---l---~-----------~~~~~~~~~~g----~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+  .+...+.|++..  ..   +   .           ...++.+..++    .+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL   86 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            34577889999999999976  345689999742  11   1   0           12344443322    34999999


Q ss_pred             ccCCCeEEEEEEEeCCC-----Cc---eeEEEEEEe--eccCCeEEEcCCceeecCCCeEEEEEeecCc-C-CCeEEEEe
Q psy11143        291 RESDAGVYNCVAQNSEG-----SA---ESVAMIRIN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-P-LPRISWSK  358 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~G-----s~---~~s~~l~V~--~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P-~p~i~W~k  358 (940)
                      +.+|+|.|.|.+.+..+     ..   .....|.|.  ...+|.+...+....+..|+.++|.|.+.+. | .+.+.|  
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--  164 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--  164 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--
Confidence            99999999999988641     11   123356664  2356666654444456789999999999985 4 247999  


Q ss_pred             CCeeecc-----------CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        359 DEAEFVE-----------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       359 ~g~~i~~-----------~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      ++..+..           +..+  ...+.|.|.....+| |.|+|.|.|..+.......|.|.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~--~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~  225 (230)
T 3n9g_H          165 NSGALTSGVHTFPAVLQSSGLY--SLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS  225 (230)
T ss_dssp             GGGTBCTTEEECCCEECTTSCE--EEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred             CCcccCCCeEeCCceECCCCCE--EEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence            5443321           1122  223479999999999 999999999988877777666654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.37  E-value=2e-12  Score=115.38  Aligned_cols=89  Identities=24%  Similarity=0.325  Sum_probs=75.4

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCC--eeeccCCcEEEe-eeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--AEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g--~~i~~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      +|.|...+..+.+.+|+.+.|.|.+.|.|.|.|.|+|++  ..+......... ..++|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   81 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCC
Confidence            677777777889999999999999999999999999999  777554333221 23579999999999999999999999


Q ss_pred             eeEEEEEEEEEe
Q psy11143        399 GEDVAEGYLTVT  410 (940)
Q Consensus       399 G~~~~s~~L~V~  410 (940)
                      |..+.++.|.|+
T Consensus        82 G~~~~~~~l~V~   93 (93)
T 1wit_A           82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CeEEEEEEEEEC
Confidence            999999988874

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=4.3e-12  Score=114.27  Aligned_cols=92  Identities=24%  Similarity=0.414  Sum_probs=79.3

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE---eeceEEEEcccccCCCeEEEEEEEe
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.|.|+|+|..+....+..+.   .....|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            3678888899999999999999999999999999999999999876665543   2234689999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy11143        121 SEGSAESVAMIRING  135 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~  135 (940)
                      ..|.....+.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999988888888754

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.36  E-value=9.5e-13  Score=120.63  Aligned_cols=100  Identities=27%  Similarity=0.566  Sum_probs=72.8

Q ss_pred             EEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe-eeceEEEecCCCCCCeEEEEE
Q psy11143        315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       315 l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~  393 (940)
                      +.|.+..+|.+...+.+..+.+|++++|.|.+.|.|.|.+.|+|++..+....+..+. ..++|.|.++..+|+|.|+|.
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEE
Confidence            3444557888888888899999999999999999999999999999888766655544 346899999999999999999


Q ss_pred             EEeCCeeEEEEEEEEEecCCC
Q psy11143        394 ASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       394 A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      |.|..|....++.|.|.+++.
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           83 ACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             EC----CEEEEEEEEEEC---
T ss_pred             EEeCCCceEEEEEEEEeCCCc
Confidence            999999999999999998754

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.36  E-value=1.9e-12  Score=115.64  Aligned_cols=89  Identities=18%  Similarity=0.296  Sum_probs=75.4

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--EeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      +|.|...+....+.+|+.+.|.|.+.|.|.|.|.|+|++  ..+..............|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   81 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCC
Confidence            677877788899999999999999999999999999999  887655333333344668999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy11143        123 GSAESVAMIRI  133 (940)
Q Consensus       123 g~~~~~~~L~V  133 (940)
                      |.....+.|.|
T Consensus        82 G~~~~~~~l~V   92 (93)
T 1wit_A           82 GEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CeEEEEEEEEE
Confidence            98777777766

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=120.57  Aligned_cols=94  Identities=26%  Similarity=0.436  Sum_probs=85.0

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      .+|.+...+.+..+.+|++++|.|.+.|.|.|.|.|+|++..+.. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG   86 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSC
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCC
Confidence            578888888888999999999999999999999999999988864 5677777788999999999999999999999999


Q ss_pred             eEEEEEEEEEecCCC
Q psy11143        400 EDVAEGYLTVTGENS  414 (940)
Q Consensus       400 ~~~~s~~L~V~~~~~  414 (940)
                      ....++.|.|..++.
T Consensus        87 ~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           87 EATWSAYIEVQEFGV  101 (118)
T ss_dssp             EEEEECCEEEECCSC
T ss_pred             cEEEEEEEEEEeCCC
Confidence            999999999998754

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1.1e-12  Score=118.33  Aligned_cols=90  Identities=27%  Similarity=0.461  Sum_probs=79.5

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      .+|.+...+.+..+.+|++++|.|.+.|.|.|.+.|+|++..+...........++|.|.++..+|+|.|+|.|.|..|.
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~   89 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQ   89 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCE
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCCe
Confidence            57888888888999999999999999999999999999998887665544444568999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy11143        401 DVAEGYLTVT  410 (940)
Q Consensus       401 ~~~s~~L~V~  410 (940)
                      ...++.|.|+
T Consensus        90 ~~~~~~l~V~   99 (99)
T 2yr3_A           90 VSCSAWVTVH   99 (99)
T ss_dssp             EEEECCEEEC
T ss_pred             EEEEEEEEEC
Confidence            9988888874

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.35  E-value=5.4e-12  Score=113.45  Aligned_cols=92  Identities=27%  Similarity=0.539  Sum_probs=80.5

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+|.+...|....+.+|+.+.|.|.+.+.|.+.|.|+|++..+....+..+..++  ..|.|.+++.+|+|.|+|.|.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            4678888889999999999999999999999999999999999877777666443  36899999999999999999999


Q ss_pred             CCceEEEEEEEEec
Q psy11143        122 EGSAESVAMIRING  135 (940)
Q Consensus       122 ~g~~~~~~~L~V~~  135 (940)
                      .|.....+.|.|.+
T Consensus        85 ~g~~~~~~~l~V~~   98 (99)
T 3puc_A           85 AGSVSSSCKLTIKA   98 (99)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCcEeEEEEEEEEe
Confidence            99988888887753

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.34  E-value=3.9e-12  Score=125.15  Aligned_cols=99  Identities=29%  Similarity=0.468  Sum_probs=85.4

Q ss_pred             eeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEEEEE
Q psy11143        318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       318 ~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~  393 (940)
                      .+..+|.|...+.++.+..|++++|.|.+.|.|.|.|.|+|++..+....++.+..    ..+|.|.++..+|+|.|+|.
T Consensus        37 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             CCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             cCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEE
Confidence            33467888888888999999999999999999999999999999988777777653    34899999999999999999


Q ss_pred             EEeCCeeEEEEEEEEEecCCCCC
Q psy11143        394 ASNLLGEDVAEGYLTVTGENSVE  416 (940)
Q Consensus       394 A~N~~G~~~~s~~L~V~~~~~~~  416 (940)
                      |.|..|.....+.|.|..++.+.
T Consensus       117 a~N~~G~~~~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          117 AVNSLGEATCTAELLVETMGKEG  139 (154)
T ss_dssp             EEETTEEEEEEEEEEEECC----
T ss_pred             EEECCCeEEEEEEEEEeCcCcCC
Confidence            99999999999999999876543

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.34  E-value=5.1e-12  Score=134.67  Aligned_cols=174  Identities=16%  Similarity=0.233  Sum_probs=109.0

Q ss_pred             ecCCceeecCCCcEEEEEEeCC--CCCCeEEEeeC--Ceecc-----------------ccCceEEeee-----ceEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDG--EPLPRISWSKD--EAEFV-----------------EDRNHKIHRT-----GSLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g--~P~p~ItW~k~--g~~i~-----------------~~~~~~~~~~-----~sL~I~  196 (940)
                      ..+..+.+.+|++++|.|.+.+  .+...+.|++.  +..+.                 ...++....+     .+|.|.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            3456778999999999999975  23468999873  21110                 0134444332     259999


Q ss_pred             ecccCCCceEEEEEEcCC----------------------cceeeeeeeeecC---CCCeeeeCCCeeEEecCCeEEEEE
Q psy11143        197 NIGPQDSGLYRCTASNLL----------------------GEDVAEGYLTVTG---APPIFIQRPVSTTYSTGSTSRITC  251 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N~~----------------------g~~s~s~~L~V~~---~~p~~~~~p~~~~v~~G~~v~L~C  251 (940)
                      +++.+|+|.|.|.+.+..                      ........|.|..   .+|.+...+....+..|+.++|.|
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C  163 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  163 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred             CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence            999999999999998742                      1122234555542   234444344444556799999999


Q ss_pred             EEeee-C-CCeEEEEECCeecCCCCc-eEEeecC-----eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143        252 LVEGH-P-LPQMTWFHDGNSLDSDDH-VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  317 (940)
Q Consensus       252 ~v~G~-P-~p~ItW~k~g~~l~~~~~-~~~~~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V  317 (940)
                      .+.+. | ...++|++++..+..... .....++     ..|.|.....++ |.|+|.|.|..+.......+.+
T Consensus       164 ~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          164 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            99984 5 347999999864421110 0111122     247888888888 9999999999877665544443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.33  E-value=4e-12  Score=114.69  Aligned_cols=92  Identities=35%  Similarity=0.646  Sum_probs=78.0

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eec-eEEEEcccccCCCeEEEEEEEe
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDG-FVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~g-s~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      .+|.+...|....+.+|+.++|.|.+.|.|.+.|.|+|+|..+.......+.  .++ ..|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            4677888888999999999999999999999999999999998766543332  222 4689999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy11143        121 SEGSAESVAMIRING  135 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~  135 (940)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           84 RAGEATFTVQLDVLA   98 (100)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEe
Confidence            999988888888764

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.32  E-value=2e-11  Score=130.32  Aligned_cols=172  Identities=13%  Similarity=0.278  Sum_probs=109.7

Q ss_pred             CCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--E---ee--------------cCCCCeEEEee----ceEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--N---SL--------------DSDDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~---~I--------------~~~~~~~~~~~----gs~L~I~~v  106 (940)
                      |..+.+.+|++|+|.|.+.+.  ....+.|||..  .   .+              ....++.+..+    ...|.|.++
T Consensus        30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  109 (256)
T 3sob_H           30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL  109 (256)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence            345679999999999999753  24589999732  1   11              01124444322    234899999


Q ss_pred             ccCCCeEEEEEEEeCCC---------ce--EEEEEEEEec--ccCCeeEecCCceeecCCCcEEEEEEeCC-CC-CCeEE
Q psy11143        107 RESDAGVYNCVAQNSEG---------SA--ESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EP-LPRIS  171 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~g---------~~--~~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P-~p~It  171 (940)
                      +.+|+|.|.|.+.+..+         ..  ...+.|.|..  ..+|.+...+....+.+|+.++|.|.+.+ .| .+.+.
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~  189 (256)
T 3sob_H          110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  189 (256)
T ss_dssp             CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEE
T ss_pred             CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEE
Confidence            99999999999987531         11  1134566653  23455554444445678999999999987 45 45799


Q ss_pred             EeeCCeecccc---------CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeec
Q psy11143        172 WSKDEAEFVED---------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  226 (940)
Q Consensus       172 W~k~g~~i~~~---------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~  226 (940)
                      |  ++..+...         ....+.....|.|.....+| |.|+|.+.+..+.......+.+.
T Consensus       190 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          190 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             E--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence            9  44333211         11112233468899998899 99999999988777666666554

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=111.49  Aligned_cols=92  Identities=26%  Similarity=0.523  Sum_probs=77.5

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC-eEEEeec--eEEEEcccccCCCeEEEEEEEe
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDG--FVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~-~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      .||.+...|....+.+|+.++|.|.+.|.|.+.|.|+|++..+..... .....++  ..|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            367888888899999999999999999999999999999999876543 2222233  3589999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy11143        121 SEGSAESVAMIRING  135 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~  135 (940)
                      ..|.....+.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999988888888754

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.6e-12  Score=118.22  Aligned_cols=94  Identities=29%  Similarity=0.499  Sum_probs=82.2

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee--e--ceEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--T--GSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~--~--~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.|...+..+.+.+|++++|.|.+.|.|.|.|.|+|++..+.......+..  +  .+|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            57888888888999999999999999999999999999998887655443322  2  3799999999999999999999


Q ss_pred             CCeeEEEEEEEEEecCCC
Q psy11143        397 LLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~~~~  414 (940)
                      ..|..+..+.|.|..++.
T Consensus        88 ~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           88 RAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             SSCEEEECCEEEEECCCC
T ss_pred             CCCEEEEEEEEEEeCCCC
Confidence            999999999999998765

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.32  E-value=4.7e-12  Score=113.63  Aligned_cols=88  Identities=23%  Similarity=0.411  Sum_probs=78.1

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      .+|.+...+....+.+|++++|.|.+.|.| |.|.|+|++..+..+.++.+. .++|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~~g~   85 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT-GEEVEVRDSIPADSGLYACVTSSPSGS   85 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC-SSEEEESSCCGGGSEEEEEEEEETTEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe-CCEEEECCCChHHCEEEEEEeccCCCc
Confidence            466777777888999999999999999998 899999999988877776654 679999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy11143        401 DVAEGYLTVT  410 (940)
Q Consensus       401 ~~~s~~L~V~  410 (940)
                      ....+.|.|.
T Consensus        86 ~~~~~~l~V~   95 (95)
T 2ckn_A           86 DTTYFSVNVS   95 (95)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            9998888773

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.31  E-value=8.7e-12  Score=116.58  Aligned_cols=96  Identities=22%  Similarity=0.491  Sum_probs=81.7

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC-CCCeEEEeec---eEEEEcccccCCCeEEEEEE
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDG---FVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~-~~~~~~~~~g---s~L~I~~v~~~DsG~YtC~a  118 (940)
                      ..+|.|+..|..+.+.+|+.++|.|.+.|.|.+.|.|+|++..+.. ..++.+..++   ..|.|.+++.+|+|.|+|.|
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            3578899999999999999999999999999999999999998874 3455555333   26899999999999999999


Q ss_pred             EeCCCceEEEEEEEEecccC
Q psy11143        119 QNSEGSAESVAMIRINGHRA  138 (940)
Q Consensus       119 ~n~~g~~~~~~~L~V~~~~~  138 (940)
                      .|..|.....+.|.|...+.
T Consensus        93 ~N~~G~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTARPN  112 (116)
T ss_dssp             EETTEEEEEEEEEEEECCSC
T ss_pred             EcCCCeEEEEEEEEEeCCCC
Confidence            99999888888888876443

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.31  E-value=1.8e-11  Score=126.65  Aligned_cols=163  Identities=16%  Similarity=0.256  Sum_probs=104.6

Q ss_pred             eEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCC--eecc----------ccCceEEeee------ceEEEeecccCC
Q psy11143        141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--AEFV----------EDRNHKIHRT------GSLRLYNIGPQD  202 (940)
Q Consensus       141 ~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g--~~i~----------~~~~~~~~~~------~sL~I~~v~~~D  202 (940)
                      +...|..+.+.+|++++|.|.+.+.+ +.+.|+|..  ..+.          ...++.+..+      .+|.|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            34456678899999999999998654 489999842  2111          2344544432      479999999999


Q ss_pred             CceEEEEEEcCCc---------c--eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeee-CC-CeEEEEECCee
Q psy11143        203 SGLYRCTASNLLG---------E--DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNS  269 (940)
Q Consensus       203 sG~YtC~a~N~~g---------~--~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~  269 (940)
                      +|.|.|.+.+..+         .  ....+.|.|..... ....| ...+..+ .+.|.|.+.|. |. +.|+|+++ ..
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~-~~~~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~  158 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ-PPAKP-SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KK  158 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCC-CCCCC-EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SE
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccCCC-CCCCC-eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Cc
Confidence            9999999998642         1  11235666663211 11112 2222222 37999999985 54 69999999 76


Q ss_pred             cCCCCc-eEEeecCeEEEEeeecc-CCCeEEEEEEEeCCCCc
Q psy11143        270 LDSDDH-VTYEHDGFVLVLNGVRE-SDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       270 l~~~~~-~~~~~~g~sL~I~~v~~-~DsG~YtC~A~N~~Gs~  309 (940)
                      +..... .....++. +.+..... ++.|.|+|.|.|..+..
T Consensus       159 l~~~~~~~~~~~~g~-y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          159 IVEFDPAIVISPSGK-YSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             EEECCCEEEECTTSS-EEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             ccCCccceEEcCCCc-EEEEEeecccCCCcEEEEEEECCccE
Confidence            653322 22233444 55544443 67899999999987543

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=5.1e-12  Score=116.42  Aligned_cols=94  Identities=31%  Similarity=0.433  Sum_probs=81.9

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeee--c--eEEEecCCCCCCeEEEEEEE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRT--G--SLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~--~--sL~I~~v~~~D~G~YtC~A~  395 (940)
                      .+|.+...+....+.+|++++|.|.+.|.|.|.|.|+|++..+.. ..++.+...  +  +|.|.++..+|+|.|+|.|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            578888888888999999999999999999999999999988865 455555432  3  69999999999999999999


Q ss_pred             eCCeeEEEEEEEEEecCCC
Q psy11143        396 NLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       396 N~~G~~~~s~~L~V~~~~~  414 (940)
                      |..|.....+.|.|..++.
T Consensus        87 N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           87 NPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             CTTCCEEECCCEEEECCSC
T ss_pred             ECCCeEEEEEEEEEECCCC
Confidence            9999999999999998754

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=4.2e-12  Score=115.62  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=79.6

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .+|.|...+.+..+.+|++++|.|.+  .|.|.+.|+|+|..+..+.++.+..++   +|.|.++..+|+|.|+|.|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            46778888888999999999999999  899999999999999888888876655   7999999999999999999998


Q ss_pred             CeeEEEEEEEEEecCCC
Q psy11143        398 LGEDVAEGYLTVTGENS  414 (940)
Q Consensus       398 ~G~~~~s~~L~V~~~~~  414 (940)
                        ..+.++.|.|.++|.
T Consensus        84 --~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 --NVTLPAKVHVISGPS   98 (100)
T ss_dssp             --CCCEEEEEEEECCSC
T ss_pred             --CeeEEEEEEEeCCCC
Confidence              567788999988753

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.30  E-value=2.7e-11  Score=126.82  Aligned_cols=169  Identities=14%  Similarity=0.223  Sum_probs=108.9

Q ss_pred             CCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--E---ee---c-----------CCCCeEEEee----ceEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--N---SL---D-----------SDDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~---~I---~-----------~~~~~~~~~~----gs~L~I~~v  106 (940)
                      |..+.+.+|++|+|.|.+.+.  +...+.|||..  .   .+   .           ...++.+..+    ...|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            446789999999999999763  34689999842  1   11   0           1124444322    244899999


Q ss_pred             ccCCCeEEEEEEEeCCC-------ceE--EEEEEEEec--ccCCeeEecCCceeecCCCcEEEEEEeCC-CC-CCeEEEe
Q psy11143        107 RESDAGVYNCVAQNSEG-------SAE--SVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EP-LPRISWS  173 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~g-------~~~--~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P-~p~ItW~  173 (940)
                      +.+|+|.|.|.+.+..+       ...  ..+.|.|..  ...|.+...+....+.+|+.++|.|.+.+ .| .+.+.| 
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-  165 (226)
T 3mlr_H           87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  165 (226)
T ss_dssp             CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE-
T ss_pred             CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE-
Confidence            99999999999986531       001  123455543  23455554444455678999999999987 44 458999 


Q ss_pred             eCCeeccc---------cCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeee
Q psy11143        174 KDEAEFVE---------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL  223 (940)
Q Consensus       174 k~g~~i~~---------~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L  223 (940)
                       ++..+..         .....+...+.|.|.....+| |.|+|.+.|..+.......+
T Consensus       166 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~  222 (226)
T 3mlr_H          166 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  222 (226)
T ss_dssp             -GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             -CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence             3332211         011112233468999998889 99999999987765544433

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.30  E-value=1.3e-11  Score=110.95  Aligned_cols=87  Identities=15%  Similarity=0.126  Sum_probs=75.5

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .+|.|...+.++.+.+|++++|.|.+.+ |.|.|.|+|+|..+..+.++.+..++   +|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            5788888889999999999999999986 55889999999999888888877655   7999999999999999999884


Q ss_pred             CeeEEEEEEEEEecC
Q psy11143        398 LGEDVAEGYLTVTGE  412 (940)
Q Consensus       398 ~G~~~~s~~L~V~~~  412 (940)
                          ..++.|.|.++
T Consensus        83 ----~~sa~L~V~~~   93 (93)
T 1waa_A           83 ----KSAANLKVKEL   93 (93)
T ss_dssp             ----EEEEEEEEECC
T ss_pred             ----cEEEEEEEEcC
Confidence                45778888753

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=8.2e-12  Score=112.82  Aligned_cols=91  Identities=32%  Similarity=0.691  Sum_probs=77.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC-CCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~-~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...|....+.+|+.++|.|.+.|.|.+.|.|+|++..+.. ..+..+..++ .|.|.+++.+|+|.|+|.|.|..
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~L~i~~v~~~d~G~Y~C~a~n~~   85 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG-TLQIKNLRISDTGTYTCVATSSS   85 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTC-CEEEESCCTTTCCEEEEEEECSS
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCC-EEEEccCCcccCEEEEEEEEcCC
Confidence            578888899999999999999999999999999999999998873 3334443344 57999999999999999999999


Q ss_pred             CceEEEEEEEEec
Q psy11143        123 GSAESVAMIRING  135 (940)
Q Consensus       123 g~~~~~~~L~V~~  135 (940)
                      |.....+.|.|..
T Consensus        86 g~~~~~~~l~V~~   98 (100)
T 2edj_A           86 GETSWSAVLDVTE   98 (100)
T ss_dssp             CCCBCCEEEEEES
T ss_pred             CCEEEEEEEEEec
Confidence            9887788888764

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.29  E-value=2.7e-12  Score=118.04  Aligned_cols=91  Identities=26%  Similarity=0.517  Sum_probs=82.3

Q ss_pred             ccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEe
Q psy11143        320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       320 ~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      ..+|.|...|.++.+.+|++++|.|.+.|.|.|.|.|+|++..+..+.++.+..   .++|.|.++..+|+|.|+|.|.|
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            357888888999999999999999999999999999999999888777777655   46899999999999999999999


Q ss_pred             CCeeEEEEEEEEEe
Q psy11143        397 LLGEDVAEGYLTVT  410 (940)
Q Consensus       397 ~~G~~~~s~~L~V~  410 (940)
                      ..|..+.++.|.|+
T Consensus        92 ~~G~~~~~~~l~V~  105 (106)
T 1nct_A           92 SEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCBCCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEE
Confidence            99999999999885

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.29  E-value=2.5e-11  Score=108.99  Aligned_cols=88  Identities=24%  Similarity=0.365  Sum_probs=76.8

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCc-CCCeEEEEeCCeeeccCCcEEEee-ec--eEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHR-TG--SLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~g~~i~~~~~~~i~~-~~--sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      +...|.+..+.+|++++|.|.+.|. |.|.+.|+|++..+....++.+.. .+  +|.|.++..+|+|.|+|.|.|..|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            3445667889999999999999997 999999999999988777777643 33  8999999999999999999999999


Q ss_pred             EEEEEEEEEecC
Q psy11143        401 DVAEGYLTVTGE  412 (940)
Q Consensus       401 ~~~s~~L~V~~~  412 (940)
                      ...++.|.|.+.
T Consensus        84 ~~~~~~l~V~~~   95 (97)
T 2bk8_A           84 DSSYAELFVKGV   95 (97)
T ss_dssp             EEEEEEEEETTT
T ss_pred             EeEEEEEEEEec
Confidence            999999998753

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.29  E-value=1.3e-11  Score=112.83  Aligned_cols=91  Identities=24%  Similarity=0.295  Sum_probs=73.6

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEE--e------eeceEEEecCCCCCCeEEEE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--H------RTGSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i--~------~~~sL~I~~v~~~D~G~YtC  392 (940)
                      .||.+....   ....+..+.|.|.+.|.|.|.|+|+|+|..+..+.+...  .      ..++|.|.++..+|+|.|+|
T Consensus         3 ~pP~i~~~~---~~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   79 (103)
T 1wwb_X            3 FAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL   79 (103)
T ss_dssp             CCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             CCCEEEecc---CceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEE
Confidence            566654221   235688999999999999999999999999887655322  1      23459999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEecCCC
Q psy11143        393 TASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       393 ~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .|.|..|....++.|.|..+|.
T Consensus        80 ~A~N~~G~~~~~~~l~V~~~P~  101 (103)
T 1wwb_X           80 IAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEECSSCEEEEEEEECCSCCCC
T ss_pred             EEEeCCCcEeEEEEEEECCCCC
Confidence            9999999999999999987653

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.28  E-value=2e-11  Score=126.17  Aligned_cols=161  Identities=19%  Similarity=0.285  Sum_probs=107.6

Q ss_pred             eeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECC--eecC----------CCCceEEeec-----CeEEEEeeeccCC
Q psy11143        232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSLD----------SDDHVTYEHD-----GFVLVLNGVRESD  294 (940)
Q Consensus       232 ~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g--~~l~----------~~~~~~~~~~-----g~sL~I~~v~~~D  294 (940)
                      +...|....+.+|++++|.|.+.+.+ +.+.|+|..  ..+.          ...++.+..+     ..+|.|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            34456778899999999999998754 589999853  2111          2345555433     2469999999999


Q ss_pred             CeEEEEEEEeCCCC-----------ceeEEEEEEeec----cCCeEEEcCCceeecCCCeEEEEEeecCc-CC-CeEEEE
Q psy11143        295 AGVYNCVAQNSEGS-----------AESVAMIRINGH----RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWS  357 (940)
Q Consensus       295 sG~YtC~A~N~~Gs-----------~~~s~~l~V~~~----~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~-p~i~W~  357 (940)
                      +|.|.|.+.+..+.           ......|.|...    .+|.+...       . ..++|.|.+.+. |. +.|+|+
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~-------~-~~~~l~C~~~g~~P~~~~v~W~  154 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIM-------K-NGTNVACLVKDFYPKEVTISLR  154 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEE-------E-ETTEEEEEEEEESSSCCEEEEE
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEe-------C-CCCeEEEEEeeEeCCCeEEEEe
Confidence            99999999987431           112346666531    23433321       1 137999999875 54 699999


Q ss_pred             eCCeeeccCC-cEEEeeeceEEEecCCC-CCCeEEEEEEEeCCeeEE
Q psy11143        358 KDEAEFVEDR-NHKIHRTGSLRLYNIGP-QDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       358 k~g~~i~~~~-~~~i~~~~sL~I~~v~~-~D~G~YtC~A~N~~G~~~  402 (940)
                      ++ ..+.... ......++++.+..... +|.|.|+|.|.|..+...
T Consensus       155 ~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~~  200 (207)
T 1ypz_E          155 SS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETVH  200 (207)
T ss_dssp             CS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEEE
T ss_pred             cC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccEe
Confidence            99 6665432 22223456666655554 678999999999987543

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.28  E-value=1.9e-11  Score=112.47  Aligned_cols=90  Identities=24%  Similarity=0.359  Sum_probs=74.4

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCC---CeEEEEeCCeeecc---CCcEEEe---------eeceEEEecCCCC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVE---DRNHKIH---------RTGSLRLYNIGPQ  385 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~---p~i~W~k~g~~i~~---~~~~~i~---------~~~sL~I~~v~~~  385 (940)
                      +.|.|+..|.++.+.+|++++|.|.+.|.|.   |.|.|+|++.....   ..++.+.         ..++|.|.+++.+
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            4577888888899999999999999999998   99999998732221   2344432         2468999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        386 DSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       386 D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      |+|.|+|.|.|..|..++++.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999999999999986

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.27  E-value=1.9e-11  Score=130.49  Aligned_cols=168  Identities=13%  Similarity=0.288  Sum_probs=109.4

Q ss_pred             eeEEecCCeEEEEEEEeee--CCCeEEEEECC--ee---c--------------CCCCceEEeec----CeEEEEeeecc
Q psy11143        238 STTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NS---L--------------DSDDHVTYEHD----GFVLVLNGVRE  292 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~--P~p~ItW~k~g--~~---l--------------~~~~~~~~~~~----g~sL~I~~v~~  292 (940)
                      ...+.+|++++|.|.+.+.  ....+.|++..  ..   +              ....++.+..+    ..+|.|.+++.
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  111 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRA  111 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCc
Confidence            4568899999999999763  34689999742  11   1              01234444332    23499999999


Q ss_pred             CCCeEEEEEEEeCCC-----------CceeEEEEEEe--eccCCeEEEcCCceeecCCCeEEEEEeecCc-C-CCeEEEE
Q psy11143        293 SDAGVYNCVAQNSEG-----------SAESVAMIRIN--GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-P-LPRISWS  357 (940)
Q Consensus       293 ~DsG~YtC~A~N~~G-----------s~~~s~~l~V~--~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P-~p~i~W~  357 (940)
                      +|+|.|.|.+.+..+           .......+.|.  ...+|.+...+....+.+|+.++|.|.+.+. | .+.+.| 
T Consensus       112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W-  190 (256)
T 3sob_H          112 EDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  190 (256)
T ss_dssp             GGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE-
T ss_pred             ccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE-
Confidence            999999999987531           11122356664  2355666644444456789999999999874 5 347999 


Q ss_pred             eCCeeecc-----------CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        358 KDEAEFVE-----------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       358 k~g~~i~~-----------~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                       ++..+..           +..+  ...++|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       191 -~~~~~~~~~~~~~~~~~~~g~~--~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          191 -NSGALTSGVHTFPAVLQSSGLY--SLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             -GGGTBCTTEEECCCEECTTSCE--EEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             -CCcccCCCeEeCCceeCCCCCE--EEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence             4433321           1122  223478999999899 99999999998877776666554

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.27  E-value=8e-11  Score=119.43  Aligned_cols=158  Identities=18%  Similarity=0.276  Sum_probs=110.5

Q ss_pred             EecCCceeecCCCcEEEEEEeCCCCCCe-EEEeeC-Ceecc-ccCceEEeeeceEEEeecccCCCceEEEEEEcCCccee
Q psy11143        142 VVKPFDMRAPAGSSVEIPCKPDGEPLPR-ISWSKD-EAEFV-EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  218 (940)
Q Consensus       142 ~~~p~~~~v~~Ge~vtL~C~v~g~P~p~-ItW~k~-g~~i~-~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s  218 (940)
                      .+.|....|.+|+++.|.|.+.. +.|. +.|... ++... ...    .....|.|.+++.  .|.|.|.+.......+
T Consensus         3 ~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~----~~~~~l~l~~vs~--~g~y~C~~~c~~~~~~   75 (185)
T 1iam_A            3 SVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPG----NNRKVYELSNVQE--DSQPMCYSNCPDGQST   75 (185)
T ss_dssp             EEESSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSS----SSEEEEEEEEECS--CBCCEEEEECSSCEEE
T ss_pred             EEECCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccC----CceeEEEEEecCc--CCEEEEEEECCCCceE
Confidence            45566778999999999999974 4454 777531 11111 110    1123588999973  3999999977656678


Q ss_pred             eeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeee-CCC--eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCC
Q psy11143        219 AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA  295 (940)
Q Consensus       219 ~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~-P~p--~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~Ds  295 (940)
                      ..+.|.|...|..+.+.+....+.+|+.++|.|.+.|. |.+  .|+|||++..+....... .....+|++.....+|.
T Consensus        76 ~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~-~~~~~tl~~~~~reD~g  154 (185)
T 1iam_A           76 AKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHG  154 (185)
T ss_dssp             EECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-TTEEEEEEEECCSSCSS
T ss_pred             EEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCC-ccccEEEEEeceeccCC
Confidence            88899999777777777777779999999999999984 554  589999999885321000 00112366665555555


Q ss_pred             eEEEEEEEeCCC
Q psy11143        296 GVYNCVAQNSEG  307 (940)
Q Consensus       296 G~YtC~A~N~~G  307 (940)
                      ..|+|+|.|..+
T Consensus       155 ~~~sC~A~~~l~  166 (185)
T 1iam_A          155 AQFSCRTELDLR  166 (185)
T ss_dssp             CEEEEEEEEECG
T ss_pred             CeEEEEEEecCc
Confidence            599999999876

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.27  E-value=4.2e-11  Score=107.57  Aligned_cols=88  Identities=19%  Similarity=0.392  Sum_probs=75.8

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      +...|.+..+.+|+.++|.|.+.|. |.+.|.|+|++..+....+..+...+  ..|.|.+++.+|+|.|+|.|.|..|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            4456778899999999999999997 89999999999999877777665333  36899999999999999999999999


Q ss_pred             eEEEEEEEEec
Q psy11143        125 AESVAMIRING  135 (940)
Q Consensus       125 ~~~~~~L~V~~  135 (940)
                      ....+.|.|..
T Consensus        84 ~~~~~~l~V~~   94 (97)
T 2bk8_A           84 DSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEETT
T ss_pred             EeEEEEEEEEe
Confidence            88888888754

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.27  E-value=2.9e-11  Score=114.64  Aligned_cols=81  Identities=25%  Similarity=0.289  Sum_probs=70.0

Q ss_pred             ecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe----------eeceEEEecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143        334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTGSLRLYNIGPQDSGLYRCTASNLLGEDVA  403 (940)
Q Consensus       334 v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~----------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~  403 (940)
                      ...+..+.|.|.+.|+|.|.|+|+|+|..+..+.+..+.          ..++|.|.++...|+|.|+|.|.|.+|...+
T Consensus        12 ~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           12 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            346789999999999999999999999999877654322          2468999999999999999999999999999


Q ss_pred             EEEEEEecCCC
Q psy11143        404 EGYLTVTGENS  414 (940)
Q Consensus       404 s~~L~V~~~~~  414 (940)
                      ++.|.|...|.
T Consensus        92 t~~l~v~~~P~  102 (126)
T 1he7_A           92 SIMAAFMDNPF  102 (126)
T ss_dssp             EEEECCCSCTT
T ss_pred             EEEEEEEcCCC
Confidence            99998887654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=1.3e-11  Score=112.25  Aligned_cols=89  Identities=15%  Similarity=0.223  Sum_probs=76.6

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+|.|...+.++.+.+|+.+.|.|.+  .|.+.|+|+|+|..+..+.++.+..++  ..|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            36788888999999999999999999  788899999999999888887777555  46899999999999999999997


Q ss_pred             CCceEEEEEEEEecc
Q psy11143        122 EGSAESVAMIRINGH  136 (940)
Q Consensus       122 ~g~~~~~~~L~V~~~  136 (940)
                        ....++.|.|...
T Consensus        84 --~~~~~a~L~V~~~   96 (100)
T 2yuz_A           84 --NVTLPAKVHVISG   96 (100)
T ss_dssp             --CCCEEEEEEEECC
T ss_pred             --CeeEEEEEEEeCC
Confidence              4456777887653

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=7.1e-12  Score=113.04  Aligned_cols=91  Identities=24%  Similarity=0.482  Sum_probs=76.8

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      +..+|.+...|....+.+|+.+.|.|.+.|.|.|.|.|+|++..+..... ........|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-TCEAGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC-EEETTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce-EeeCCeEEEEECCCChhhCEEEEEEEEEC
Confidence            44578888889999999999999999999999999999999998875433 33334456899999999999999999999


Q ss_pred             CCceEEEEEEEE
Q psy11143        122 EGSAESVAMIRI  133 (940)
Q Consensus       122 ~g~~~~~~~L~V  133 (940)
                      .|.....+.|.|
T Consensus        87 ~g~~~~~~~l~V   98 (99)
T 2yr3_A           87 LGQVSCSAWVTV   98 (99)
T ss_dssp             SCEEEEECCEEE
T ss_pred             CCeEEEEEEEEE
Confidence            998777766665

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2e-11  Score=114.03  Aligned_cols=92  Identities=16%  Similarity=0.256  Sum_probs=76.8

Q ss_pred             cCCeEEEc---CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEE
Q psy11143        321 RAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTA  394 (940)
Q Consensus       321 ~~P~i~~~---p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A  394 (940)
                      .+|.+...   +....+.+|++++|.|.+.|.|.|.|.|+|++..+. ..++.+..   ..+|.|.++..+|+|.|+|.|
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            46666542   456788999999999999999999999999999886 33444432   346999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEecCC
Q psy11143        395 SNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       395 ~N~~G~~~~s~~L~V~~~~  413 (940)
                      .|..|.....+.|.|..+|
T Consensus        99 ~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           99 QIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             ECSSCEECCEEEEEEECCC
T ss_pred             EeCCCeEEEEEEEEEEcCC
Confidence            9999999999999998764

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.26  E-value=1.6e-11  Score=120.64  Aligned_cols=97  Identities=28%  Similarity=0.491  Sum_probs=83.9

Q ss_pred             EEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe---eceEEEEcccccCCCeEEEE
Q psy11143         40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH---DGFVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        40 l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~---~gs~L~I~~v~~~DsG~YtC  116 (940)
                      +.|..+|.+...+....+.+|+.++|.|.+.|.|.+.|.|+|++..+....+..+..   ....|.|.+++.+|+|.|+|
T Consensus        36 ~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  115 (154)
T 1fhg_A           36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC  115 (154)
T ss_dssp             CCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred             ccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEE
Confidence            455567899999999999999999999999999999999999999998777666652   23468999999999999999


Q ss_pred             EEEeCCCceEEEEEEEEecc
Q psy11143        117 VAQNSEGSAESVAMIRINGH  136 (940)
Q Consensus       117 ~a~n~~g~~~~~~~L~V~~~  136 (940)
                      .|.|..|.....+.|.|...
T Consensus       116 ~a~N~~G~~~~~~~l~V~~~  135 (154)
T 1fhg_A          116 KAVNSLGEATCTAELLVETM  135 (154)
T ss_dssp             EEEETTEEEEEEEEEEEECC
T ss_pred             EEEECCCeEEEEEEEEEeCc
Confidence            99999999888888888753

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=9.3e-12  Score=114.45  Aligned_cols=95  Identities=27%  Similarity=0.527  Sum_probs=80.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe---eceEEEEcccccCCCeEEEEEEEe
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH---DGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~---~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      .+|.+...|..+.+.+|+.++|.|.+.+.|.+.|.|+|++..+.......+..   ....|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            47889999999999999999999999999999999999999887665544331   234789999999999999999999


Q ss_pred             CCCceEEEEEEEEecccC
Q psy11143        121 SEGSAESVAMIRINGHRA  138 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~~~~  138 (940)
                      ..|.....+.|.|...+.
T Consensus        88 ~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           88 RAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             SSCEEEECCEEEEECCCC
T ss_pred             CCCEEEEEEEEEEeCCCC
Confidence            999988888888876443

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.25  E-value=3.5e-11  Score=108.02  Aligned_cols=87  Identities=18%  Similarity=0.229  Sum_probs=73.5

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+|.|...+.++.+.+|+.++|.|.+.+ +.+.|.|+|||..|..+.++++..++  ..|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            4678889999999999999999999976 45789999999999887788777555  46899999999999999999763


Q ss_pred             CCceEEEEEEEEec
Q psy11143        122 EGSAESVAMIRING  135 (940)
Q Consensus       122 ~g~~~~~~~L~V~~  135 (940)
                          ..++.|.|..
T Consensus        83 ----~~sa~L~V~~   92 (93)
T 1waa_A           83 ----KSAANLKVKE   92 (93)
T ss_dssp             ----EEEEEEEEEC
T ss_pred             ----cEEEEEEEEc
Confidence                4566777653

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.24  E-value=2.5e-11  Score=127.03  Aligned_cols=167  Identities=14%  Similarity=0.235  Sum_probs=109.8

Q ss_pred             CCeeEEecCCeEEEEEEEeee--CCCeEEEEECC--ee---c--------------CCCCceEEeec----CeEEEEeee
Q psy11143        236 PVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NS---L--------------DSDDHVTYEHD----GFVLVLNGV  290 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~--P~p~ItW~k~g--~~---l--------------~~~~~~~~~~~----g~sL~I~~v  290 (940)
                      +....+.+|++++|.|.+.+.  +...+.|++..  ..   +              ....++.+..+    ..+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            335778899999999999763  35689999842  11   1              01134444322    234999999


Q ss_pred             ccCCCeEEEEEEEeCCC---------CceeEEEEEEee--ccCCeEEEcCCceeecCCCeEEEEEeecCc-C-CCeEEEE
Q psy11143        291 RESDAGVYNCVAQNSEG---------SAESVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-P-LPRISWS  357 (940)
Q Consensus       291 ~~~DsG~YtC~A~N~~G---------s~~~s~~l~V~~--~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P-~p~i~W~  357 (940)
                      +.+|+|.|.|.+.+..+         .......+.|..  ..+|.+...+....+..|..++|.|.+.+. | .+.+.| 
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-  165 (226)
T 3mlr_H           87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  165 (226)
T ss_dssp             CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE-
T ss_pred             CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE-
Confidence            99999999999987531         001123455532  356666644444456789999999999885 4 348999 


Q ss_pred             eCCeeec-----------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143        358 KDEAEFV-----------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL  407 (940)
Q Consensus       358 k~g~~i~-----------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L  407 (940)
                       ++..+.           .++.+.  ..++|.|.....+| |.|+|.|.|..+.......|
T Consensus       166 -~~~~~~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~  222 (226)
T 3mlr_H          166 -NSGALTSGVHTFPAVLQSSGLYS--LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  222 (226)
T ss_dssp             -GGGTCCTTEEECCCEECTTSCEE--EEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             -CCccccCCeEeCCcEECCCCCEE--EEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence             333221           112222  23478999998889 99999999998876554443

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.24  E-value=1.8e-11  Score=109.77  Aligned_cols=87  Identities=18%  Similarity=0.347  Sum_probs=74.6

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      .||.+...|....+.+|+.+.|.|.+.|.| +.|.|+|+|..+....+..+.  +..|.|.+++.+|+|.|+|.|.|..|
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~n~~g   84 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--GEEVEVRDSIPADSGLYACVTSSPSG   84 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--SSEEEESSCCGGGSEEEEEEEEETTE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--CCEEEECCCChHHCEEEEEEeccCCC
Confidence            466777788889999999999999999987 799999999998766655443  55789999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy11143        124 SAESVAMIRI  133 (940)
Q Consensus       124 ~~~~~~~L~V  133 (940)
                      .....+.|.|
T Consensus        85 ~~~~~~~l~V   94 (95)
T 2ckn_A           85 SDTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEEE
T ss_pred             cEEEEEEEEE
Confidence            8777777765

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.24  E-value=1.7e-12  Score=122.23  Aligned_cols=102  Identities=25%  Similarity=0.347  Sum_probs=83.7

Q ss_pred             eeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCe-EEEEeCCeeecc--CCcEEEe--e-----eceEEE
Q psy11143        310 ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVE--DRNHKIH--R-----TGSLRL  379 (940)
Q Consensus       310 ~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~-i~W~k~g~~i~~--~~~~~i~--~-----~~sL~I  379 (940)
                      +..+.|.|  ..+|.+.. +....+.+|+.+.|.|.+.|.|.|. |.|++++..+..  ..++.+.  .     .++|.|
T Consensus         4 ~~~~~l~V--~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I   80 (122)
T 2cry_A            4 GSSGTLTV--NGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI   80 (122)
T ss_dssp             SCCCCCCC--CSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEEC
T ss_pred             ceEEEEEE--ecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEE
Confidence            33444444  47888888 7788899999999999999999997 999999988864  3555552  1     338999


Q ss_pred             ecCCCCCC-eEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        380 YNIGPQDS-GLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       380 ~~v~~~D~-G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .++..+|. |.|+|.|.|..|.....+.|.|++++.
T Consensus        81 ~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  116 (122)
T 2cry_A           81 SNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM  116 (122)
T ss_dssp             TTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred             cCCChhhCCceEEEEEECCCCeEEEEEEEEECCCCC
Confidence            99999999 999999999999999999999887643

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=2.2e-11  Score=112.13  Aligned_cols=95  Identities=26%  Similarity=0.505  Sum_probs=80.2

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC-CCCeEEEe--ec-eEEEEcccccCCCeEEEEEE
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEH--DG-FVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~-~~~~~~~~--~g-s~L~I~~v~~~DsG~YtC~a  118 (940)
                      ..+|.+...+....+.+|+.++|.|.+.|.|.+.|.|+|++..+.. ..++.+..  ++ ..|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            3578888888999999999999999999999999999999998875 34455542  23 26899999999999999999


Q ss_pred             EeCCCceEEEEEEEEeccc
Q psy11143        119 QNSEGSAESVAMIRINGHR  137 (940)
Q Consensus       119 ~n~~g~~~~~~~L~V~~~~  137 (940)
                      .|..|.....+.|.|...+
T Consensus        86 ~N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             ECTTCCEEECCCEEEECCS
T ss_pred             EECCCeEEEEEEEEEECCC
Confidence            9999998888888887643

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.23  E-value=3.4e-11  Score=111.49  Aligned_cols=101  Identities=20%  Similarity=0.401  Sum_probs=85.0

Q ss_pred             CCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCC
Q psy11143        307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIG  383 (940)
Q Consensus       307 Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~  383 (940)
                      |....++.|.|.. .||.+...+.+..+.+|++++|.|.+.+.  |.+.|+|++..+..+.++.+..++   +|.|.++.
T Consensus         5 g~~~~~~~l~V~~-~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~   81 (113)
T 2edh_A            5 SSGRTSAMLTVRA-LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLV   81 (113)
T ss_dssp             CCCCCCCCCCCCC-SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCC
T ss_pred             CCCcEEEEEEEEc-CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCC
Confidence            4444555666653 46788888888999999999999999875  789999999999888888887777   89999999


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        384 PQDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       384 ~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .+|+|.|+|.|    |....++.|.|..+|.
T Consensus        82 ~~D~G~Y~C~a----~~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           82 AEDAGEYLCMC----GKERTSAMLTVRAMPS  108 (113)
T ss_dssp             STTCEEEEEEE----TTEEEEEEEEECCCCC
T ss_pred             hhhCEEEEEEe----CCCCEEEEEEEeCCCC
Confidence            99999999999    7788889999988754

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.23  E-value=1e-11  Score=114.20  Aligned_cols=91  Identities=27%  Similarity=0.534  Sum_probs=79.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee--ceEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~--gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+|.|...|..+.+.+|+.+.|.|.+.|.|.|.|.|+|+|..+....+..+...  ...|.|.+++.+|+|.|+|.|.|.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   92 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS   92 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCS
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeC
Confidence            467888999999999999999999999999999999999999877766666532  456899999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy11143        122 EGSAESVAMIRIN  134 (940)
Q Consensus       122 ~g~~~~~~~L~V~  134 (940)
                      .|.....+.|.|.
T Consensus        93 ~G~~~~~~~l~V~  105 (106)
T 1nct_A           93 EGKQEAEFTLTIQ  105 (106)
T ss_dssp             SCBCCEEEEEEEC
T ss_pred             CCeEEEEEEEEEE
Confidence            9998888877764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3.9e-11  Score=112.14  Aligned_cols=91  Identities=22%  Similarity=0.329  Sum_probs=74.8

Q ss_pred             CCCeEEe---CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe--eceEEEEcccccCCCeEEEEEE
Q psy11143         44 APPIFIQ---RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--DGFVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        44 ~pP~~~~---~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~--~gs~L~I~~v~~~DsG~YtC~a  118 (940)
                      .+|.+..   .+....+.+|+.+.|.|.+.|.|.|.|.|+|+|..+. ..+..+..  ....|.|.+++.+|+|.|+|.|
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            4566654   3567889999999999999999999999999999987 34444442  2345899999999999999999


Q ss_pred             EeCCCceEEEEEEEEec
Q psy11143        119 QNSEGSAESVAMIRING  135 (940)
Q Consensus       119 ~n~~g~~~~~~~L~V~~  135 (940)
                      .|..|.....+.|.|..
T Consensus        99 ~N~~G~~~~~~~l~V~~  115 (118)
T 2e7c_A           99 QIENMKDTATIRIRVVE  115 (118)
T ss_dssp             ECSSCEECCEEEEEEEC
T ss_pred             EeCCCeEEEEEEEEEEc
Confidence            99999877788787765

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.22  E-value=4.5e-11  Score=111.70  Aligned_cols=95  Identities=19%  Similarity=0.175  Sum_probs=75.5

Q ss_pred             EeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe-------eeceEEEecCCCCCCeE
Q psy11143        317 INGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------RTGSLRLYNIGPQDSGL  389 (940)
Q Consensus       317 V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~-------~~~sL~I~~v~~~D~G~  389 (940)
                      +.+..||.+...+. .  .......|.|.+.|.|.|.+.|+|+|..+..+.+..+.       ..++|.|.++..+|+|.
T Consensus         3 L~V~~pP~i~~~~~-~--~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   79 (118)
T 1wwc_A            3 LTVYYPPRVVSLEE-P--ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN   79 (118)
T ss_dssp             -CCCCCCCCCCCCC-C--CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEEecCCceeccCC-C--eeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEE
Confidence            34446777655432 1  23367889999999999999999999998877655543       35689999999999999


Q ss_pred             EEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        390 YRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       390 YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      |+|.|.|..|...+++.|.|...|.
T Consensus        80 Y~C~a~N~~G~~~~~~~l~v~~~P~  104 (118)
T 1wwc_A           80 YTLIAKNPLGTANQTINGHFLKEPF  104 (118)
T ss_dssp             EEEEEEETTEEEEEEEEECCSCCCC
T ss_pred             EEEEEECCCCeEeeEEEEEEccCCC
Confidence            9999999999999999998887653

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.21  E-value=3.1e-11  Score=108.92  Aligned_cols=88  Identities=28%  Similarity=0.482  Sum_probs=72.4

Q ss_pred             CCeEEEcC----CceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCc---EEEe-eeceEEEecCCCCCCeEEEEE
Q psy11143        322 APRLVVKP----FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN---HKIH-RTGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       322 ~P~i~~~p----~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~---~~i~-~~~sL~I~~v~~~D~G~YtC~  393 (940)
                      +|.+...+    ..+.+.+|++++|.|.+.|.|.|.+.|+|++..+....+   +... ..++|.|.++..+|+|.|+|.
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   83 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV   83 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEE
Confidence            55565444    346788999999999999999999999999998865432   2222 345899999999999999999


Q ss_pred             EEeCCeeEEEEEEEEE
Q psy11143        394 ASNLLGEDVAEGYLTV  409 (940)
Q Consensus       394 A~N~~G~~~~s~~L~V  409 (940)
                      |.|..|....++.|.|
T Consensus        84 a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           84 VENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEeCCCEEEEEEEEEE
Confidence            9999999999888877

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.21  E-value=2.4e-10  Score=115.85  Aligned_cols=157  Identities=15%  Similarity=0.246  Sum_probs=104.9

Q ss_pred             eCCCeeEEecCCeEEEEEEEeeeCCCe-EEEEEC-CeecC-CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGHPLPQ-MTWFHD-GNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k~-g~~l~-~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      +.|....|.+|+++.|.|.+.. +.|. +.|.-. ++... ...     .....|.|.+++. | |.|.|.+.+.....+
T Consensus         4 v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~-----~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~   75 (185)
T 1iam_A            4 VSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPG-----NNRKVYELSNVQE-D-SQPMCYSNCPDGQST   75 (185)
T ss_dssp             EESSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSS-----SSEEEEEEEEECS-C-BCCEEEEECSSCEEE
T ss_pred             EECCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccC-----CceeEEEEEecCc-C-CEEEEEEECCCCceE
Confidence            4466678999999999999964 4454 677521 11111 100     1113489999984 3 999999977655566


Q ss_pred             eEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC--eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCC
Q psy11143        311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS  387 (940)
Q Consensus       311 ~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p--~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~  387 (940)
                      ..+.|.|.. .|..+.+.+....+.+|+.++|.|.+.|. |.+  .|+|+|++..+..........+.+|.+.....+|.
T Consensus        76 ~~~~l~V~~-~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~~~~~~tl~~~~~reD~g  154 (185)
T 1iam_A           76 AKTFLTVYW-TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHG  154 (185)
T ss_dssp             EECEEEEEB-CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSS
T ss_pred             EEEEEEEeC-CCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCCccccEEEEEeceeccCC
Confidence            666677764 34455666665669999999999999985 543  59999999887532100001122577665555555


Q ss_pred             eEEEEEEEeCCe
Q psy11143        388 GLYRCTASNLLG  399 (940)
Q Consensus       388 G~YtC~A~N~~G  399 (940)
                      ..|+|.|.|..+
T Consensus       155 ~~~sC~A~~~l~  166 (185)
T 1iam_A          155 AQFSCRTELDLR  166 (185)
T ss_dssp             CEEEEEEEEECG
T ss_pred             CeEEEEEEecCc
Confidence            599999999876

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.21  E-value=4.9e-11  Score=113.12  Aligned_cols=90  Identities=19%  Similarity=0.235  Sum_probs=74.4

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCc---CCCeEEEEeCCee-ec--cCCcEEEe---------eeceEEEecCCCCC
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGE---PLPRISWSKDEAE-FV--EDRNHKIH---------RTGSLRLYNIGPQD  386 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~---P~p~i~W~k~g~~-i~--~~~~~~i~---------~~~sL~I~~v~~~D  386 (940)
                      .|.|+..|.++.+.+|++++|.|.+.|.   |.|.|.|+|++.. +.  ...++.+.         ...+|.|.+++.+|
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            4667888889999999999999999875   8999999997421 11  12344442         14689999999999


Q ss_pred             CeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143        387 SGLYRCTASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       387 ~G~YtC~A~N~~G~~~~s~~L~V~~  411 (940)
                      +|.|+|+|.|..|..++.+.|.|..
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999999999999999998

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.20  E-value=5.4e-11  Score=108.27  Aligned_cols=88  Identities=17%  Similarity=0.233  Sum_probs=74.6

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeee---ceEEEecCCCCCCeEEEEEEEe
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRT---GSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      |+.|...+.++.+.+|++++|.|.+.+ |.+.+.|+|++..+....  ++.+...   .+|.|.++..+|+|.|+|.|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            444677778889999999999999988 779999999999988776  5566654   4799999999999999999998


Q ss_pred             CCeeEEEEEEEEEecCCC
Q psy11143        397 LLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~~~~  414 (940)
                          ...++.|.|..++.
T Consensus        86 ----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           86 ----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             ----EEEEEEEEEECCCS
T ss_pred             ----CcEEEEEEEeCCCC
Confidence                56778899988754

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=4.2e-11  Score=108.81  Aligned_cols=89  Identities=19%  Similarity=0.328  Sum_probs=78.1

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .||.+...+.+..+.+|++++|.|.+.+ |.+.+.|+|++..+....++.+..++   +|.|.++..+|+|.|+|.|.| 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   84 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-   84 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-
Confidence            5788888888899999999999999997 88899999999998877788777665   699999999999999999999 


Q ss_pred             CeeEEEEEEEEEecCCC
Q psy11143        398 LGEDVAEGYLTVTGENS  414 (940)
Q Consensus       398 ~G~~~~s~~L~V~~~~~  414 (940)
                         ...++.|.|..+|.
T Consensus        85 ---~~~~~~l~V~~~p~   98 (103)
T 2edf_A           85 ---SKSTASLHVEEKAS   98 (103)
T ss_dssp             ---CEEEEEEEECCCSS
T ss_pred             ---CCcEEEEEEeCCCC
Confidence               36678899987754

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.19  E-value=3.8e-11  Score=108.25  Aligned_cols=89  Identities=22%  Similarity=0.547  Sum_probs=72.2

Q ss_pred             CCeEEeCC----CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC---eEEEeeceEEEEcccccCCCeEEEEE
Q psy11143         45 PPIFIQRP----VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        45 pP~~~~~p----~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~---~~~~~~gs~L~I~~v~~~DsG~YtC~  117 (940)
                      +|.|...|    ....+.+|+.+.|.|.+.|.|.+.|.|+|+|..+.....   ......+..|.|.+++.+|+|.|+|.
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   83 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV   83 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEE
Confidence            45555443    467889999999999999999999999999998865432   34444555789999999999999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy11143        118 AQNSEGSAESVAMIRI  133 (940)
Q Consensus       118 a~n~~g~~~~~~~L~V  133 (940)
                      |.|..|.....+.|.|
T Consensus        84 a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           84 VENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEeCCCEEEEEEEEEE
Confidence            9999998777777765

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.19  E-value=9.1e-11  Score=107.16  Aligned_cols=93  Identities=22%  Similarity=0.315  Sum_probs=71.6

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEE--E-----eeceEEEEcccccCCCeEE
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY--E-----HDGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~--~-----~~gs~L~I~~v~~~DsG~Y  114 (940)
                      |..||.+.....   ...|+.+.|.|.+.|.|.|.|+|+|+|..+........  .     .....|.|.+++.+|+|.|
T Consensus         1 V~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   77 (103)
T 1wwb_X            1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY   77 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             CCCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEE
Confidence            345666532221   24688999999999999999999999999987655322  1     1123489999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEeccc
Q psy11143        115 NCVAQNSEGSAESVAMIRINGHR  137 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L~V~~~~  137 (940)
                      +|.|.|..|....++.|.|...+
T Consensus        78 ~C~A~N~~G~~~~~~~l~V~~~P  100 (103)
T 1wwb_X           78 TLIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEECSSCEEEEEEEECCSCCC
T ss_pred             EEEEEeCCCcEeEEEEEEECCCC
Confidence            99999999998888888876543

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.18  E-value=1.3e-10  Score=106.84  Aligned_cols=90  Identities=19%  Similarity=0.325  Sum_probs=72.1

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCC---CeEEEEECCEeec---CCCCeEEEe--------eceEEEEcccccCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNSLD---SDDHVTYEH--------DGFVLVLNGVRESD  110 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~---p~V~W~kdg~~I~---~~~~~~~~~--------~gs~L~I~~v~~~D  110 (940)
                      .|.|...|..+.+.+|+.++|.|.+.|.|.   |.|.|+|++....   ...++.+..        ....|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            578888999999999999999999999988   9999999873221   112333321        23568999999999


Q ss_pred             CeEEEEEEEeCCCceEEEEEEEEe
Q psy11143        111 AGVYNCVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus       111 sG~YtC~a~n~~g~~~~~~~L~V~  134 (940)
                      +|.|+|.|.|..|.....+.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999998888888874

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=5.8e-11  Score=107.39  Aligned_cols=83  Identities=22%  Similarity=0.409  Sum_probs=72.7

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      |..+.+.+|+.++|.|.+.|.| |.|.|+|++..+....++.+. .++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   87 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN   87 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC-SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEEC
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE-CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence            4456788999999999999987 799999999988777676665 67999999999999999999999999998888888


Q ss_pred             EecCC
Q psy11143        409 VTGEN  413 (940)
Q Consensus       409 V~~~~  413 (940)
                      |...+
T Consensus        88 V~~~~   92 (99)
T 2cr3_A           88 VSDAL   92 (99)
T ss_dssp             BCSCC
T ss_pred             EecCC
Confidence            87654

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.17  E-value=1.8e-10  Score=124.00  Aligned_cols=171  Identities=12%  Similarity=0.275  Sum_probs=108.5

Q ss_pred             CCcEEEecCCeEEEEEEeec--cCCCeEEEEECC--E---ee---cC-----------CCCeEEEe----eceEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDG--N---SL---DS-----------DDHVTYEH----DGFVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kdg--~---~I---~~-----------~~~~~~~~----~gs~L~I~~v  106 (940)
                      |..+.+.+|++|+|.|.+.+  .....+.|||..  .   .+   ..           ..++.+..    ....|.|.++
T Consensus        30 ~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  109 (267)
T 3u1s_H           30 SGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGL  109 (267)
T ss_dssp             CCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSC
T ss_pred             eCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCC
Confidence            34577999999999999965  344689999742  1   11   00           12344332    2245899999


Q ss_pred             ccCCCeEEEEEEEe------CCC------------c-eE------EEEEEEEec--ccCCeeEecCCceeecCCCcEEEE
Q psy11143        107 RESDAGVYNCVAQN------SEG------------S-AE------SVAMIRING--HRAPRLVVKPFDMRAPAGSSVEIP  159 (940)
Q Consensus       107 ~~~DsG~YtC~a~n------~~g------------~-~~------~~~~L~V~~--~~~P~~~~~p~~~~v~~Ge~vtL~  159 (940)
                      +.+|+|.|.|.+.+      ..+            . ..      ..+.|.|..  ...|.+...+....+.+|+.++|.
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~  189 (267)
T 3u1s_H          110 TADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALG  189 (267)
T ss_dssp             CGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEE
T ss_pred             ChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEE
Confidence            99999999999962      101            0 10      134566642  234555543333344679999999


Q ss_pred             EEeCC-CC-CCeEEEeeCCeecccc---------CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeee
Q psy11143        160 CKPDG-EP-LPRISWSKDEAEFVED---------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV  225 (940)
Q Consensus       160 C~v~g-~P-~p~ItW~k~g~~i~~~---------~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V  225 (940)
                      |.+.+ .| .+.++|  ++..+...         ....+...+.|.|.....+| +.|+|.+.+..+.......+.+
T Consensus       190 C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~  263 (267)
T 3u1s_H          190 CLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  263 (267)
T ss_dssp             EEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence            99987 45 458999  44433211         11122233468898888888 9999999998766555555544

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=4.7e-11  Score=108.67  Aligned_cols=89  Identities=22%  Similarity=0.353  Sum_probs=75.5

Q ss_pred             cCCeEEEcCCc---eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEE
Q psy11143        321 RAPRLVVKPFD---MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTA  394 (940)
Q Consensus       321 ~~P~i~~~p~~---~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A  394 (940)
                      .+|.+...|..   +.+.+|++++|.|.+.+.|.| +.|+|++..+....++.+...+   +|.|.+++.+|+|.|+|.|
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            46777777766   788999999999999999999 9999999998877777766544   6999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEecCCC
Q psy11143        395 SNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       395 ~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .|..+    .+.|.|..+|.
T Consensus        85 ~n~~~----~~~l~V~~~P~  100 (104)
T 2e6p_A           85 EGVSA----FFGVTVQDPSG  100 (104)
T ss_dssp             SSCCC----CEEEEEECCCC
T ss_pred             CCceE----EEEEEEcCCCC
Confidence            99754    67788887764

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=3.4e-11  Score=112.95  Aligned_cols=91  Identities=20%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCc---CCCeEEEEeCCe-eecc--CCcEEEe---------eeceEEEecCCCCC
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGE---PLPRISWSKDEA-EFVE--DRNHKIH---------RTGSLRLYNIGPQD  386 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~---P~p~i~W~k~g~-~i~~--~~~~~i~---------~~~sL~I~~v~~~D  386 (940)
                      .+.|+..|.++.+.+|++++|.|.+.|.   |.|.|.|+|++. .+..  ..++.+.         .+.+|.|.++..+|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            4567777888999999999999999875   789999999742 1111  2333432         14689999999999


Q ss_pred             CeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        387 SGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       387 ~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      +|.|+|+|+|..|..++.+.|.|.++
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            99999999999999999999999875

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.17  E-value=5e-11  Score=104.90  Aligned_cols=78  Identities=22%  Similarity=0.385  Sum_probs=66.9

Q ss_pred             CceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      .++.+.+|++++|.|.+.+ |.|.|+|+|+|..+..+.++.+...+   +|.|.++..+|+|.|+|.|.|.    ..++.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~a~   78 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD----SRIFL   78 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT----CEEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE----EEEEE
Confidence            4678899999999999976 99999999999999888888776654   6999999999999999998664    55677


Q ss_pred             EEEecC
Q psy11143        407 LTVTGE  412 (940)
Q Consensus       407 L~V~~~  412 (940)
                      |.|.+|
T Consensus        79 l~V~eP   84 (84)
T 2lu7_A           79 VSVEEP   84 (84)
T ss_dssp             EEECCC
T ss_pred             EEEECC
Confidence            888754

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.17  E-value=1.2e-10  Score=103.48  Aligned_cols=84  Identities=18%  Similarity=0.362  Sum_probs=71.4

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      ++.+...|....+.+|++++|.|.+.|.|.|.|.|+|++..+....      .++|.|.+++.+|+|.|+|.|.|..|..
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~   76 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------KKLYMVPYVDLEHQGTYWCHVYNDRDSQ   76 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC------SSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC------CCeEEECCCCHHhCEEEEEEEEcCCCCE
Confidence            4667777888889999999999999999999999999998876543      3589999999999999999999999975


Q ss_pred             E-EEEEEEEec
Q psy11143        402 V-AEGYLTVTG  411 (940)
Q Consensus       402 ~-~s~~L~V~~  411 (940)
                      . ..+.|.|.+
T Consensus        77 ~s~~~~l~V~~   87 (91)
T 3bfo_A           77 DSKKVEIIIDE   87 (91)
T ss_dssp             ECCCEEEEEC-
T ss_pred             EeeeEEEEEeh
Confidence            5 456777754

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.16  E-value=1.3e-10  Score=104.61  Aligned_cols=81  Identities=25%  Similarity=0.466  Sum_probs=68.2

Q ss_pred             cCCceeecCCCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        328 KPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      .+....+.+|++++|.|.+. +.|.|.+.|+|++.......  ....+++|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT   93 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce--eecCCCEEEEeCCChhhCEEEEEEecCCCCccccEEE
Confidence            34567899999999999998 78999999999764433222  3345679999999999999999999999999999999


Q ss_pred             EEEe
Q psy11143        407 LTVT  410 (940)
Q Consensus       407 L~V~  410 (940)
                      |.|+
T Consensus        94 l~V~   97 (98)
T 1gl4_B           94 LHVQ   97 (98)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9886

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.16  E-value=1.4e-10  Score=110.09  Aligned_cols=91  Identities=18%  Similarity=0.344  Sum_probs=72.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeecc---CCCeEEEEECCEe-ec--CCCCeEEEe--------eceEEEEcccccCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHDGNS-LD--SDDHVTYEH--------DGFVLVLNGVRESD  110 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~---P~p~V~W~kdg~~-I~--~~~~~~~~~--------~gs~L~I~~v~~~D  110 (940)
                      .+.|...|.++.|.+|+.++|.|.+.+.   |.|.|+|||+... +.  ...++.+..        ....|.|.+++.+|
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            3678889999999999999999999874   8899999997421 11  123344321        13568999999999


Q ss_pred             CeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        111 AGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       111 sG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      +|.|+|+|.|..|..+..+.|+|.+
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999999888889999987

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.16  E-value=1.1e-10  Score=106.10  Aligned_cols=89  Identities=18%  Similarity=0.379  Sum_probs=72.6

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeec--eEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDG--FVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      |+.|...+.++.+.+|+.++|.|.+.+ |.+.|.|+|++..+....  ++++..++  ..|.|.+++.+|+|.|+|.|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            445777888999999999999999987 668999999999998776  44666443  5689999999999999999976


Q ss_pred             CCCceEEEEEEEEecccC
Q psy11143        121 SEGSAESVAMIRINGHRA  138 (940)
Q Consensus       121 ~~g~~~~~~~L~V~~~~~  138 (940)
                          ....+.|.|...+.
T Consensus        86 ----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           86 ----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             ----EEEEEEEEEECCCS
T ss_pred             ----CcEEEEEEEeCCCC
Confidence                45677788776443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.16  E-value=4.8e-11  Score=106.75  Aligned_cols=84  Identities=24%  Similarity=0.326  Sum_probs=67.0

Q ss_pred             cCCeEEEcCCce--eecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEE
Q psy11143        321 RAPRLVVKPFDM--RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       321 ~~P~i~~~p~~~--~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~  395 (940)
                      .||.|+.++.+.  .+.+|++++|.|.+.+ |.|.++|+|+|..+..+.++.+..++   +|.|.++..+|+|.|+|.|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            456565555544  4568999999999976 88999999999999888888877665   79999999999999999997


Q ss_pred             eCCeeEEEEEEEEE
Q psy11143        396 NLLGEDVAEGYLTV  409 (940)
Q Consensus       396 N~~G~~~~s~~L~V  409 (940)
                      |.    ..++.|+|
T Consensus        82 n~----~~~~~ltV   91 (91)
T 2lvc_A           82 DE----CAYFTVTI   91 (91)
T ss_dssp             SC----EEEEEEEC
T ss_pred             ce----EEEEEEEC
Confidence            75    44555543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.15  E-value=8.3e-11  Score=103.50  Aligned_cols=79  Identities=27%  Similarity=0.521  Sum_probs=65.8

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCceEEEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVA  129 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~  129 (940)
                      ..++.+.+|+.+.|.|.+.+ |.|.|+|+|||.+|..+.++.+..++  ..|.|.+++.+|+|.|+|.|.|    ....+
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a   77 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIF   77 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEE
Confidence            46788999999999999966 88899999999999888888777544  4689999999999999999843    45567


Q ss_pred             EEEEec
Q psy11143        130 MIRING  135 (940)
Q Consensus       130 ~L~V~~  135 (940)
                      .|.|..
T Consensus        78 ~l~V~e   83 (84)
T 2lu7_A           78 LVSVEE   83 (84)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            777753

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.15  E-value=2e-09  Score=121.25  Aligned_cols=163  Identities=13%  Similarity=0.225  Sum_probs=105.5

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--------------CCeEEEEEC--CE--e--ec-CC---------CC-eEE----
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--------------LPQMTWFHD--GN--S--LD-SD---------DH-VTY----   94 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--------------~p~V~W~kd--g~--~--I~-~~---------~~-~~~----   94 (940)
                      .++..+.+.+|++++|.|..+..+              ...|.||+.  |+  .  +. .+         .. ..+    
T Consensus       163 tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~  242 (401)
T 3f8u_B          163 THTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWD  242 (401)
T ss_dssp             ESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEES
T ss_pred             CCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeec
Confidence            356678899999999999986433              347999863  31  1  11 10         01 112    


Q ss_pred             -------EeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCcee-ecCCC-cEEEEEEeCC-
Q psy11143         95 -------EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGS-SVEIPCKPDG-  164 (940)
Q Consensus        95 -------~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~-v~~Ge-~vtL~C~v~g-  164 (940)
                             ......|.|.+++.+|+|.|+|.+.+..+..+..+.|.|..  +|.+.+.+.... +..|+ .++|.|.+.+ 
T Consensus       243 ~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~--pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gf  320 (401)
T 3f8u_B          243 DDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK--PPKVSLMPATLARAAPGEAPPELLCLVSHF  320 (401)
T ss_dssp             CCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB--CCEEEEESSSCCCCCTTCCCCCEEEEEEEE
T ss_pred             ccccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc--CCeEeeccCcceeecCCCccEEEEEEecCC
Confidence                   12335689999999999999999999877666666677664  566766655544 45786 8999999998 


Q ss_pred             CCC--CeEEEe-eCCe---ecccc-----------CceEEeeeceEEEeecccCCC-ceEEEEEEcCC
Q psy11143        165 EPL--PRISWS-KDEA---EFVED-----------RNHKIHRTGSLRLYNIGPQDS-GLYRCTASNLL  214 (940)
Q Consensus       165 ~P~--p~ItW~-k~g~---~i~~~-----------~~~~~~~~~sL~I~~v~~~Ds-G~YtC~a~N~~  214 (940)
                      +|.  +.|+|. +++.   .+...           ....+.....|.+...+.++. +.|+|.+.+..
T Consensus       321 yP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          321 YPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             BSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             cCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            465  799995 7651   11111           011122223455555433344 59999999875

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.15  E-value=4.9e-11  Score=109.19  Aligned_cols=89  Identities=17%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .+|.|...+.++.+.+|++++|.|.+.+.|.+ +.|+|++..+....++.+..++   +|.|.++..+|+|.|+|.|.|.
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence            57888888889999999999999999999988 9999999998877777777665   8999999999999999999998


Q ss_pred             CeeEEEEEEEEEecC
Q psy11143        398 LGEDVAEGYLTVTGE  412 (940)
Q Consensus       398 ~G~~~~s~~L~V~~~  412 (940)
                        ....++.|.|...
T Consensus        86 --~~~~~~~l~V~~~   98 (106)
T 2dlt_A           86 --ALSLSAKLNFLEI   98 (106)
T ss_dssp             --CCCCCBCEEEECC
T ss_pred             --CceEEEEEEEEEE
Confidence              4556667777743

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.15  E-value=1.3e-10  Score=105.78  Aligned_cols=92  Identities=17%  Similarity=0.345  Sum_probs=74.8

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCe-eec-------cCCcEEEe----eeceEEEecCCCCCCe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA-EFV-------EDRNHKIH----RTGSLRLYNIGPQDSG  388 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~-~i~-------~~~~~~i~----~~~sL~I~~v~~~D~G  388 (940)
                      .+|.+...+.++.+.+|++++|.|.+.+.|.+.+.|++++. .+.       .+.++.+.    ...+|.|.+++.+|+|
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG   84 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCe
Confidence            45667777888999999999999999999999999999875 221       22355554    3558999999999999


Q ss_pred             EEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143        389 LYRCTASNLLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       389 ~YtC~A~N~~G~~~~s~~L~V~~~~  413 (940)
                      .|+|.|.| .|..+..+.|.|.++|
T Consensus        85 ~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           85 QYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             EEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            99999999 8999999999998764

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=5.6e-11  Score=108.86  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.|...+.+..+.+|++++|.|.+.+.|.+ .+.|+|+|..+..+.++.+..++   +|.|.++..+|+|.|+|.|.|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            45667777888999999999999999998864 89999999999887788776655   799999999999999999855


Q ss_pred             CCeeEEEEEEEEEecCCC
Q psy11143        397 LLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~~~~  414 (940)
                          ...++.|.|.++|.
T Consensus        87 ----~~~~a~L~V~~~p~  100 (104)
T 2eny_A           87 ----LTSKASLIVRERSG  100 (104)
T ss_dssp             ----EEEEECEEEECCCS
T ss_pred             ----eeEEEEEEEeCCCc
Confidence                56788999998764

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.15  E-value=2.3e-10  Score=103.42  Aligned_cols=88  Identities=18%  Similarity=0.220  Sum_probs=76.7

Q ss_pred             cCCeEEEcCCc-eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~-~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.|...+.+ ..+.+|++++|.|.+. .|.|.+.|+|++..+..+.++.+...+   +|.|.++..+|+|.|+|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            47888877776 6788999999999998 799999999999998877777776654   6999999999999999999  


Q ss_pred             CCeeEEEEEEEEEecCC
Q psy11143        397 LLGEDVAEGYLTVTGEN  413 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~~~  413 (940)
                        |....++.|.|.++|
T Consensus        83 --g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 --GDEKCSTELFVRSGP   97 (100)
T ss_dssp             --TTEEEEEEEEECCSC
T ss_pred             --CCceEEEEEEEecCC
Confidence              778888999998875

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.15  E-value=9.9e-11  Score=109.33  Aligned_cols=95  Identities=23%  Similarity=0.363  Sum_probs=74.0

Q ss_pred             EEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe------eceEEEEcccccCCCe
Q psy11143         39 HVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH------DGFVLVLNGVRESDAG  112 (940)
Q Consensus        39 ~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~------~gs~L~I~~v~~~DsG  112 (940)
                      .|.|..||.+...+...   ..+...|.|.+.|+|.|.|+|+|+|..+.......+..      ....|.|.+++.+|+|
T Consensus         2 ~L~V~~pP~i~~~~~~~---~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   78 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG   78 (118)
T ss_dssp             --CCCCCCCCCCCCCCC---CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             EEEEecCCceeccCCCe---eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCE
Confidence            56788888765553322   23678899999999999999999999998766555441      3456899999999999


Q ss_pred             EEEEEEEeCCCceEEEEEEEEecc
Q psy11143        113 VYNCVAQNSEGSAESVAMIRINGH  136 (940)
Q Consensus       113 ~YtC~a~n~~g~~~~~~~L~V~~~  136 (940)
                      .|+|.|.|..|.....+.|.|...
T Consensus        79 ~Y~C~a~N~~G~~~~~~~l~v~~~  102 (118)
T 1wwc_A           79 NYTLIAKNPLGTANQTINGHFLKE  102 (118)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSCC
T ss_pred             EEEEEEECCCCeEeeEEEEEEccC
Confidence            999999999998888877766543

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=8.4e-11  Score=106.82  Aligned_cols=89  Identities=19%  Similarity=0.412  Sum_probs=75.2

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeece--EEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs--~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .||.+...+....+.+|+.++|.|.+.+ |.+.|.|+|++..+....++.+..++.  .|.|.+++.+|+|.|+|.|.| 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   84 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-   84 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-
Confidence            4778888889999999999999999987 778999999999998777777775553  689999999999999999988 


Q ss_pred             CCceEEEEEEEEeccc
Q psy11143        122 EGSAESVAMIRINGHR  137 (940)
Q Consensus       122 ~g~~~~~~~L~V~~~~  137 (940)
                         ....+.|.|...+
T Consensus        85 ---~~~~~~l~V~~~p   97 (103)
T 2edf_A           85 ---SKSTASLHVEEKA   97 (103)
T ss_dssp             ---CEEEEEEEECCCS
T ss_pred             ---CCcEEEEEEeCCC
Confidence               3556777776543

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.14  E-value=2e-10  Score=101.97  Aligned_cols=83  Identities=25%  Similarity=0.434  Sum_probs=70.0

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ++.+...|....+.+|+.+.|.|.+.|.|.+.|.|+|++..+....       ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~   75 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------KKLYMVPYVDLEHQGTYWCHVYNDRDS   75 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC-------SSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC-------CCeEEECCCCHHhCEEEEEEEEcCCCC
Confidence            5677788888999999999999999999999999999999886543       246799999999999999999999986


Q ss_pred             eEE-EEEEEEe
Q psy11143        125 AES-VAMIRIN  134 (940)
Q Consensus       125 ~~~-~~~L~V~  134 (940)
                      ..+ .+.|.|.
T Consensus        76 ~~s~~~~l~V~   86 (91)
T 3bfo_A           76 QDSKKVEIIID   86 (91)
T ss_dssp             EECCCEEEEEC
T ss_pred             EEeeeEEEEEe
Confidence            553 4555553

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.14  E-value=1.1e-10  Score=104.45  Aligned_cols=83  Identities=24%  Similarity=0.457  Sum_probs=65.2

Q ss_pred             CCeEEeCCCcEEE--ecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTY--STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V--~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      |+.+...+.+..+  .+|+.+.|.|.+.+ |.+.|+|+|||..|..+.++++..++  ..|.|.+++.+|+|.|+|.|.|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            5555555555544  58999999999966 88899999999999888888877555  3589999999999999999855


Q ss_pred             CCCceEEEEEEE
Q psy11143        121 SEGSAESVAMIR  132 (940)
Q Consensus       121 ~~g~~~~~~~L~  132 (940)
                      .    ...+.|+
T Consensus        83 ~----~~~~~lt   90 (91)
T 2lvc_A           83 E----CAYFTVT   90 (91)
T ss_dssp             C----EEEEEEE
T ss_pred             e----EEEEEEE
Confidence            3    4455544

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.13  E-value=2.3e-10  Score=102.35  Aligned_cols=83  Identities=27%  Similarity=0.431  Sum_probs=72.0

Q ss_pred             cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL  407 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L  407 (940)
                      .|.+..+.+|++++|.|.+.+  .|.+.|+|+|..+....++.+ ..++|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   83 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVL-IGEYLQIKGATPRDSGLYACTAARTVDSETWIFMV   83 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEE-ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEE-eCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEE
Confidence            355678899999999999987  579999999999877777665 46799999999999999999999999999999999


Q ss_pred             EEecCC
Q psy11143        408 TVTGEN  413 (940)
Q Consensus       408 ~V~~~~  413 (940)
                      .|..++
T Consensus        84 ~V~~~~   89 (95)
T 4hwu_A           84 NVTDAA   89 (95)
T ss_dssp             EECCC-
T ss_pred             EEeCCc
Confidence            998764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.13  E-value=2.8e-10  Score=105.23  Aligned_cols=100  Identities=23%  Similarity=0.447  Sum_probs=84.6

Q ss_pred             CcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecC--eEEEEeeec
Q psy11143        214 LGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVR  291 (940)
Q Consensus       214 ~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g--~sL~I~~v~  291 (940)
                      .|..+.++.|.|...+|.+...+....+.+|+++.|.|.+.+.  |.+.|+|++..+..+.++.+..++  ..|.|.++.
T Consensus         4 ~g~~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~   81 (113)
T 2edh_A            4 GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLV   81 (113)
T ss_dssp             CCCCCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCC
T ss_pred             CCCCcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCC
Confidence            4556677888888777788888888999999999999999775  689999999999888888877666  359999999


Q ss_pred             cCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143        292 ESDAGVYNCVAQNSEGSAESVAMIRING  319 (940)
Q Consensus       292 ~~DsG~YtC~A~N~~Gs~~~s~~l~V~~  319 (940)
                      .+|+|.|+|.|    +....++.|.|..
T Consensus        82 ~~D~G~Y~C~a----~~~~~~~~l~V~~  105 (113)
T 2edh_A           82 AEDAGEYLCMC----GKERTSAMLTVRA  105 (113)
T ss_dssp             STTCEEEEEEE----TTEEEEEEEEECC
T ss_pred             hhhCEEEEEEe----CCCCEEEEEEEeC
Confidence            99999999999    6667777777764

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.13  E-value=1.4e-10  Score=107.85  Aligned_cols=93  Identities=32%  Similarity=0.620  Sum_probs=73.0

Q ss_pred             ccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC-----cEEEeeeceEEEe-----cCCCCCCeE
Q psy11143        320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-----NHKIHRTGSLRLY-----NIGPQDSGL  389 (940)
Q Consensus       320 ~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~-----~~~i~~~~sL~I~-----~v~~~D~G~  389 (940)
                      ..||.+...|.+..+.+|++++|.|.+.|.|.|.|+|+|++..+....     ......++.+.+.     +++.+|+|.
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence            357888888888999999999999999999999999999998876442     2334445555554     457899999


Q ss_pred             EEEEEEeCCeeEEE-EEEEEEecC
Q psy11143        390 YRCTASNLLGEDVA-EGYLTVTGE  412 (940)
Q Consensus       390 YtC~A~N~~G~~~~-s~~L~V~~~  412 (940)
                      |+|.|.|..|...+ .+.|.|..+
T Consensus        87 Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           87 YVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC--
T ss_pred             EEEEEEeCccceEeeeEEEEhhhh
Confidence            99999999998766 556666543

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=3.7e-11  Score=111.89  Aligned_cols=100  Identities=22%  Similarity=0.298  Sum_probs=81.4

Q ss_pred             EEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe-e---eceEEEecCCCCCCe
Q psy11143        313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-R---TGSLRLYNIGPQDSG  388 (940)
Q Consensus       313 ~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~-~---~~sL~I~~v~~~D~G  388 (940)
                      +.|.|.. .++.+...+.+..+.+|++++|.|.+.|.|.|.+.|+|++..+..+.++.+. .   ..+|.|.++..+|+|
T Consensus         5 a~l~V~~-~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   83 (115)
T 2cr6_A            5 SSGLVQG-RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSG   83 (115)
T ss_dssp             CCCCCCS-SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCE
T ss_pred             EEEEEcC-CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCE
Confidence            3445543 3457888888899999999999999999999999999999998877666554 2   237999999999999


Q ss_pred             EEEEEEEeCCeeEEEEEEEEEecCCCCCC
Q psy11143        389 LYRCTASNLLGEDVAEGYLTVTGENSVEP  417 (940)
Q Consensus       389 ~YtC~A~N~~G~~~~s~~L~V~~~~~~~~  417 (940)
                      .|+|.    .|....++.|.|..+|.+..
T Consensus        84 ~Y~C~----~g~~~~~~~L~V~~~p~~~~  108 (115)
T 2cr6_A           84 TIYFE----AGDQRASAALRVTEKPSVFS  108 (115)
T ss_dssp             EEEEE----ETTEECCEEEEEECCSSCCS
T ss_pred             EEEEE----ECCeeEEEEEEEECCCceec
Confidence            99999    46777889999998775433

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.12  E-value=5.2e-10  Score=114.37  Aligned_cols=160  Identities=17%  Similarity=0.176  Sum_probs=110.4

Q ss_pred             eeEecCCceeecCCCcEEEEEEeCCCCCC-eEEEeeC--CeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcc
Q psy11143        140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKD--EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  216 (940)
Q Consensus       140 ~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p-~ItW~k~--g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~  216 (940)
                      .+.+.|....|.+|+++.|.|.+.. +.+ .+.|.-.  +......     .....+.|.+++ +|.+.|.|.+......
T Consensus         4 ~v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~g-----~~~~~~~ls~vs-~d~~~~~C~~~c~~~~   76 (196)
T 3bn3_B            4 WADLQPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLRRNGTQRG-----LRWLARQLVDIR-EPETQPVCFFRCARRT   76 (196)
T ss_dssp             CEEEESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSEEEEEEEE-----TTEEEEEEEEEC-SSEECCEEEEEETTEE
T ss_pred             EEEEcCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccCCeeEccc-----cCceEEEEEEEc-cCCCceEEEEECCCCc
Confidence            3456677788999999999999974 444 6788542  1111000     011238899998 8888899998776666


Q ss_pred             eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEee-eCCC--eEEEEECCeecCCCCceEEee-----cCeEEEEe
Q psy11143        217 DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP--QMTWFHDGNSLDSDDHVTYEH-----DGFVLVLN  288 (940)
Q Consensus       217 ~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G-~P~p--~ItW~k~g~~l~~~~~~~~~~-----~g~sL~I~  288 (940)
                      .+..+.|.|...|....+.+....+.+|+.++|+|.+.+ +|..  +|+|+|++..+..... ....     ....+++.
T Consensus        77 ~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~-~~~~~~~~~~t~~~~~~  155 (196)
T 3bn3_B           77 LQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSF-AGEPPRARGAVLTATVL  155 (196)
T ss_dssp             EEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEEC-TTSCTTCCCEEEEEEEE
T ss_pred             eEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecccc-ccccccccceeEEEEEe
Confidence            778889999876666666666556889999999999988 4554  4899999988742210 0000     01235666


Q ss_pred             eeccCCCeEEEEEEEeCCC
Q psy11143        289 GVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       289 ~v~~~DsG~YtC~A~N~~G  307 (940)
                      ....++...|+|.|.|..+
T Consensus       156 ~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          156 ARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             CCGGGTTCEEEEEEEEECG
T ss_pred             eeeccCCCeEEEEEEccCC
Confidence            5556565699999999876

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.2e-10  Score=105.97  Aligned_cols=88  Identities=22%  Similarity=0.520  Sum_probs=72.7

Q ss_pred             CCCeEEeCCCc---EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEE
Q psy11143         44 APPIFIQRPVS---TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        44 ~pP~~~~~p~~---~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a  118 (940)
                      .+|.+...|..   +.+.+|+.++|.|.+.+.|.+ |.|+|++..+....++.+..++  ..|.|.+++.+|+|.|+|.+
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            46777777777   789999999999999999988 9999999999877777776444  46899999999999999999


Q ss_pred             EeCCCceEEEEEEEEecc
Q psy11143        119 QNSEGSAESVAMIRINGH  136 (940)
Q Consensus       119 ~n~~g~~~~~~~L~V~~~  136 (940)
                      .|..+    .+.|.|...
T Consensus        85 ~n~~~----~~~l~V~~~   98 (104)
T 2e6p_A           85 EGVSA----FFGVTVQDP   98 (104)
T ss_dssp             SSCCC----CEEEEEECC
T ss_pred             CCceE----EEEEEEcCC
Confidence            88743    455666553

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.12  E-value=1e-10  Score=107.02  Aligned_cols=88  Identities=20%  Similarity=0.352  Sum_probs=74.0

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+|.|...+.++.+.+|+.+.|.|.+.+.|.+ |.|+|++..+....++.+..++  ..|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence            47888899999999999999999999998877 9999999999877777777555  56899999999999999999987


Q ss_pred             CCceEEEEEEEEe
Q psy11143        122 EGSAESVAMIRIN  134 (940)
Q Consensus       122 ~g~~~~~~~L~V~  134 (940)
                        .....+.|.|.
T Consensus        86 --~~~~~~~l~V~   96 (106)
T 2dlt_A           86 --ALSLSAKLNFL   96 (106)
T ss_dssp             --CCCCCBCEEEE
T ss_pred             --CceEEEEEEEE
Confidence              33344555554

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.11  E-value=4.5e-10  Score=102.42  Aligned_cols=90  Identities=26%  Similarity=0.446  Sum_probs=73.1

Q ss_pred             ccCCeEEEcCCceeecCCCeEEEEEeecCc--CCCeEEEEeCCeeeccCCcEEE-----------eeeceEEEecCCCCC
Q psy11143        320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE--PLPRISWSKDEAEFVEDRNHKI-----------HRTGSLRLYNIGPQD  386 (940)
Q Consensus       320 ~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~--P~p~i~W~k~g~~i~~~~~~~i-----------~~~~sL~I~~v~~~D  386 (940)
                      ..+|.+...|....+.+|++++|.|.+.+.  |.+.+.|+|++..+........           ...++|.|.+++.+|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            468889988888999999999999999965  4579999999988764421111           124689999999999


Q ss_pred             CeEEEEEEEeCCee-EEEEEEEEE
Q psy11143        387 SGLYRCTASNLLGE-DVAEGYLTV  409 (940)
Q Consensus       387 ~G~YtC~A~N~~G~-~~~s~~L~V  409 (940)
                      +|.|+|.|.|..|. .+..+.|.|
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEEEe
Confidence            99999999999998 457777776

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.11  E-value=6.7e-10  Score=116.86  Aligned_cols=159  Identities=19%  Similarity=0.318  Sum_probs=105.1

Q ss_pred             eeCCCeeEEecCCeEEEEEEEeeeC--CCeEEEEEC--Cee---cC---------CCCceEEeec----CeEEEEeeecc
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNS---LD---------SDDHVTYEHD----GFVLVLNGVRE  292 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~P--~p~ItW~k~--g~~---l~---------~~~~~~~~~~----g~sL~I~~v~~  292 (940)
                      ...|....+.+|++++|.|.+.+.+  ...+.|++.  |..   +.         ...++.+..+    ..+|.|.+++.
T Consensus         5 ~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   84 (229)
T 1hxm_A            5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (229)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             EeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCH
Confidence            4456778899999999999998654  468999985  221   10         1345555432    23699999999


Q ss_pred             CCCeEEEEEEEeCCC------C--ceeEEEEEEee----ccCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEe
Q psy11143        293 SDAGVYNCVAQNSEG------S--AESVAMIRING----HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSK  358 (940)
Q Consensus       293 ~DsG~YtC~A~N~~G------s--~~~s~~l~V~~----~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k  358 (940)
                      +|+|.|.|.+.+..+      .  ......|.|..    ..+|.+....        ..++|.|.+.|. |.+ .|.|++
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~--------~~~~L~C~~~g~~P~~i~v~W~~  156 (229)
T 1hxm_A           85 RDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK--------NGTNVACLVKEFYPKDIRINLVS  156 (229)
T ss_dssp             GGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE--------ETTEEEEEEESCBSSCCEEEEEC
T ss_pred             hHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC--------CCCeEEEEEEEEeCCCEEEEEec
Confidence            999999999988631      1  11223566653    1245444321        125899999875 555 899999


Q ss_pred             CCeeeccCCc-EEEeeeceEEEecCCC-CCCeEEEEEEEeCCee
Q psy11143        359 DEAEFVEDRN-HKIHRTGSLRLYNIGP-QDSGLYRCTASNLLGE  400 (940)
Q Consensus       359 ~g~~i~~~~~-~~i~~~~sL~I~~v~~-~D~G~YtC~A~N~~G~  400 (940)
                      + ..+..... .....++++.+..... .+.|.|+|.|.|..+.
T Consensus       157 ~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~~  199 (229)
T 1hxm_A          157 S-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNKT  199 (229)
T ss_dssp             S-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTEE
T ss_pred             C-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCCC
Confidence            9 66654322 2223345666654443 6789999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	940
g1cxp.1	570	a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapi	3e-28
g1cxp.1	570	a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapi	5e-27
g1cxp.1	570	a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapi	1e-15
g1cxp.1	570	a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapi	7e-14
g1cxp.1	570	a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapi	6e-10
d1q4ga1	511	a.93.1.2 (A:74-584) Prostaglandin H2 synthase {She	5e-24
d1q4ga1	511	a.93.1.2 (A:74-584) Prostaglandin H2 synthase {She	7e-22
d1cvua1	511	a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mou	2e-23
d1cvua1	511	a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mou	9e-22
d1cvua1	511	a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mou	1e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-17
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-17
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-16
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-16
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-17
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	9e-17
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	9e-17
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-16
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-16
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-16
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-15
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-16
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-16
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-15
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-14
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	0.003
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-16
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-15
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.003
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-15
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-15
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-14
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-13
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-13
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	6e-14
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	6e-14
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-10
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-14
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-13
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-13
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-11
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	5e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	6e-13
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-12
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-12
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-12
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-12
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-11
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-11
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	5e-12
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	5e-12
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	5e-09
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	5e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-11
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-11
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	7e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	7e-09
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-11
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-11
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-11
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-11
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-11
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-11
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	8e-11
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	8e-11
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	6e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-04
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-10
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	7e-10
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	2e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	6e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-10
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-10
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	4e-10
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	4e-10
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	9e-10
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	9e-10
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.004
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-09
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-09
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	7e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	7e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	9e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-06
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-09
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-09
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	7e-09
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	8e-09
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-08
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	5e-08
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	3e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-09
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-09
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	1e-08
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	1e-08
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-08
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-08
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-07
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-08
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-08
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	7e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	7e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	8e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-08
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	5e-08
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	5e-08
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.001
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-07
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-07
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	6e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	6e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	5e-07
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	5e-07
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	6e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	6e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	3e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	7e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	6e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	6e-04
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	2e-06
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	2e-06
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	8e-04
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	8e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	3e-06
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	3e-06
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.001
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.001
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	4e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-04
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	6e-06
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	6e-06
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	0.002
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	0.002
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	6e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	6e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	5e-05
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	5e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	9e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	2e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	5e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.002
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	2e-04
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	7e-04
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	8e-04
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	0.001
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	2e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	2e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.001
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.001
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	3e-04
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	3e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	3e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	3e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	0.001
d1hxma2	86	b.1.1.2 (A:121-206) T-cell antigen receptor {Human	3e-04
d1hxma2	86	b.1.1.2 (A:121-206) T-cell antigen receptor {Human	3e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	4e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	4e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	6e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	6e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	0.001
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	0.001
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	8e-04
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.003
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.003
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.003

>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} Length = 511

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Sheep (Ovis aries) [TaxId: 9940]

 Score =  104 bits (261), Expect = 5e-24
 Identities = 25/187 (13%), Positives = 53/187 (28%), Gaps = 12/187 (6%)

Query: 690 GFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFK 749
            FR   +      F    + ++   +   +D F          G  +   +  + +D  K
Sbjct: 321 SFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIK 380

Query: 750 RIRDGNIDP------FVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILED 803
             R   + P        G               M   L + +  I    ++ + G +LE 
Sbjct: 381 ESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDA--LEFYPGLLLEK 438

Query: 804 QVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN----PSTFKPAQLTQIKQASLARVICDS 859
                  G +M  +      +   G+           +         +K A+L +++C +
Sbjct: 439 CHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVCLN 498

Query: 860 GDRLTEV 866
                 V
Sbjct: 499 TKTCPYV 505

>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} Length = 511

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 98.1 bits (244), Expect = 7e-22
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLD 574
           +D S  + F     ++ + GV+ L+  F   PA R     N++  +            L 
Sbjct: 327 QDYSY-EQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHI------------LH 373

Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
           +A   I+  R   +  +N +R+  G+    +F++L     ++ +  +L+ LYG  
Sbjct: 374 VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELT---GEKEMAAELEELYGDI 425

>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Length = 511

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 2e-23
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN---PSTF-KPAQLTQI 847
            ++ +   ++E        G TM  L      +   G+         PSTF        I
Sbjct: 428 VMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKII 487

Query: 848 KQASLARVICDSGD 861
             AS+  +IC++  
Sbjct: 488 NTASIQSLICNNVK 501

>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Length = 511

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.7 bits (243), Expect = 9e-22
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 514 SEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSL 573
            ++ S  +  ++   ++ E G+   +  F    A R     N                  
Sbjct: 327 DQEYSFKQFLYNN-SILLEHGLTQFVESFTRQIAGRVAGGRN------------VPIAVQ 373

Query: 574 DLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
            +A  +I + R+      N +R+   L    +FE+L     ++ +  +L+ LY   
Sbjct: 374 AVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELT---GEKEMAAELKALYSDI 426

>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Length = 511

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)

Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
            ++ +   ++E        G TM  L      +   G  +P 
Sbjct: 428 VMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMG--NPI 467

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 44  APPIFIQRPVSTTY-STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
           + P + Q+P        G    I C V G P P + W H+   L        +     LV
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG---LV 57

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
           + GV+  D G Y C A N  G      ++++N
Sbjct: 58  IKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 228 APPIFIQRPVSTTY-STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
           + P + Q+P        G    I C V G P P + W H+   L        +     LV
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG---LV 57

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           + GV+  D G Y C A N  G      ++++N
Sbjct: 58  IKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 73.6 bits (180), Expect = 1e-16
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 138 APRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 196
           AP+   KP   +    G  V IPCK  G P P + WS +       R         L + 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG--LVIK 59

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            +   D G Y C A+N  G+   E  + V
Sbjct: 60  GVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 73.6 bits (180), Expect = 1e-16
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 322 APRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 380
           AP+   KP   +    G  V IPCK  G P P + WS +       R         L + 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG--LVIK 59

Query: 381 NIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            +   D G Y C A+N  G+   E  + V
Sbjct: 60  GVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN 43
          LVI GV+    G Y C A N  G    +  V VN
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 7e-17
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 195
           P+++  P D +  AG SVE+  K  G      +W K   +  E  + K+  +     L +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
                +  G Y     N LG   A+  LTV   P
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 9e-17
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVL 103
           P  IQ P       G +  +   V G      TW      +   +H  V    +G  L +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
              R+   G Y  + +N  GS ++   + +     P
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 96

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 9e-17
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVL 287
           P  IQ P       G +  +   V G      TW      +   +H  V    +G  L +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
              R+   G Y  + +N  GS ++   + +     P
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 96

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 7e-16
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRL 379
           P+++  P D +  AG SVE+  K  G      +W K   +  E  + K+  +     L +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
                +  G Y     N LG   A+  LTV  
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 92

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 9  ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
          +L I   ++EH G Y+ +  N  G  +  +++TV   P
Sbjct: 57 KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 94

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 1e-16
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 138 APRLVVKPFDMR-----APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--- 189
           AP        M       PA ++V+  C   G P+P + W K+  EF ++     ++   
Sbjct: 1   APY-WTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 59

Query: 190 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
              SL + ++ P D G Y C   N  G      +L V
Sbjct: 60  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 1e-16
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 322 APRLVVKPFDMR-----APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--- 373
           AP        M       PA ++V+  C   G P+P + W K+  EF ++     ++   
Sbjct: 1   APY-WTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 59

Query: 374 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
              SL + ++ P D G Y C   N  G      +L V
Sbjct: 60  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 1e-15
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 46  PIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDG 98
           P +                +T +  C   G+P+P M W  +G     +  +      +  
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61

Query: 99  FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
           + L++  V  SD G Y CV +N  GS      + +
Sbjct: 62  WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 1e-15
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 230 PIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDG 282
           P +                +T +  C   G+P+P M W  +G     +  +      +  
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
           + L++  V  SD G Y CV +N  GS      + +
Sbjct: 62  WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.4 bits (179), Expect = 2e-16
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LVL 103
           P FI +P  T    G ++   C V     P +TW  D   L         ++G    L +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
           N V+  D G Y   A+NS G+ E +  + +  H  P
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.4 bits (179), Expect = 2e-16
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LVL 287
           P FI +P  T    G ++   C V     P +TW  D   L         ++G    L +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
           N V+  D G Y   A+NS G+ E +  + +  H  P
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.1 bits (173), Expect = 1e-15
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 195
           PR +VKP+      G S    C+      P ++W KD+ E  +   +     G    L +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
             +   D G Y   A N  G      +L VT    
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.0 bits (165), Expect = 2e-14
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 379
           PR +VKP+      G S    C+      P ++W KD+ E  +   +     G    L +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
             +   D G Y   A N  G      +L VT 
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR 93

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGD--LHVTVNAPP 46
          L I+ V+ +  G Y+  A N  G       L+VT ++ P
Sbjct: 59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.0 bits (178), Expect = 3e-16
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 43  NAPPIFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS----DDHVTYEH 96
           N PP     Q  V+ T + G +  + C  +G P P M+W  DG  +++    D+   +  
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
           D   L +  V ++D   Y C+A+N  G  ++   +++
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.7 bits (172), Expect = 2e-15
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 229 PPIFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS----DDHVTYEHDG 282
           PP     Q  V+ T + G +  + C  +G P P M+W  DG  +++    D+   +  D 
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
             L +  V ++D   Y C+A+N  G  ++   +++
Sbjct: 63  SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 136 HRAPRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---- 189
           +  P +  +    +  A  G SV + C  DG P P +SW+KD      +           
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 190 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            +  L + N+   D   Y C A N  GE  A  +L V
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 320 HRAPRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---- 373
           +  P +  +    +  A  G SV + C  DG P P +SW+KD      +           
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 374 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            +  L + N+   D   Y C A N  GE  A  +L V
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 7  STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
          S+EL I  V +     Y C+A N AG     +H+ V A
Sbjct: 62 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.2 bits (171), Expect = 2e-15
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
           AP I  + P  T   TG    + C   G+P+PQ+ W              +     +L +
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG----SQTSKWLSSEPLLHI 59

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
             V   D G Y C A+N +G       I I+
Sbjct: 60  QNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.2 bits (171), Expect = 2e-15
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 287
           AP I  + P  T   TG    + C   G+P+PQ+ W              +     +L +
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG----SQTSKWLSSEPLLHI 59

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
             V   D G Y C A+N +G       I I+
Sbjct: 60  QNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.5 bits (169), Expect = 4e-15
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 136 HRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
             AP +  K P D  A  G  V + C   G P+P+I W K         +  +     L 
Sbjct: 2   QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL---DGSQTSKWLSSEPLLH 58

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
           + N+  +D G Y C A N+ G D  +G + +
Sbjct: 59  IQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.5 bits (169), Expect = 4e-15
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 320 HRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
             AP +  K P D  A  G  V + C   G P+P+I W K         +  +     L 
Sbjct: 2   QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL---DGSQTSKWLSSEPLLH 58

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           + N+  +D G Y C A N+ G D  +G + +
Sbjct: 59  IQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
          L I  V  E  G Y C A N  G       + ++A
Sbjct: 57 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 5e-15
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL--- 101
            P   +R  S T   GS +     V G P P+  W+ +G  ++  D + +      +   
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           V+  V   D+      A N  G   S A + +  
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 5e-15
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL--- 285
            P   +R  S T   GS +     V G P P+  W+ +G  ++  D + +      +   
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
           V+  V   D+      A N  G   S A + +  
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 5e-14
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY- 196
           AP++  +        GS      +  G+P P   W K+  +         +         
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 197 ---NIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
              ++  +DS      A N+ GE  +  +L V  
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 5e-14
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY- 380
           AP++  +        GS      +  G+P P   W K+  +         +         
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 381 ---NIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
              ++  +DS      A N+ GE  +  +L V  
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 105
           P ++     T    GS  R +C+  G P P + W  DG           E  G  L  + 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ--PLASQNRIEVSGGELRFSK 59

Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
           +   D+G+Y CVA+N  G+  + A + +
Sbjct: 60  LVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 289
           P ++     T    GS  R +C+  G P P + W  DG           E  G  L  + 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ--PLASQNRIEVSGGELRFSK 59

Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRI 317
           +   D+G+Y CVA+N  G+  + A + +
Sbjct: 60  LVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
           P  +    D  A  GS +   C   G+P P + W +D       +N      G LR   +
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL-ASQNRIEVSGGELRFSKL 60

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTV 225
             +DSG+Y+C A N  G   A   LTV
Sbjct: 61  VLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
           P  +    D  A  GS +   C   G+P P + W +D       +N      G LR   +
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL-ASQNRIEVSGGELRFSKL 60

Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTV 409
             +DSG+Y+C A N  G   A   LTV
Sbjct: 61  VLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
          L  S +  E  G Y CVA N  G       +TV A
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.1 bits (160), Expect = 6e-14
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 45  PPIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHD-GNSLDSDDHVTYEHDGFV 100
            P+F ++P  T +  GS      +TC    +P     W  +        D       G +
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAES 127
           ++ N V+  DAG Y CVA N+ G+  S
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVS 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.1 bits (160), Expect = 6e-14
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 229 PPIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHD-GNSLDSDDHVTYEHDGFV 284
            P+F ++P  T +  GS      +TC    +P     W  +        D       G +
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAES 311
           ++ N V+  DAG Y CVA N+ G+  S
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVS 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 138 APRLVVKPFDMRAPAGS---SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--GS 192
            P    +P     P GS    V + C+    P     W  +  E     + +        
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDV 218
           +    +  +D+G Y+C A+N  G  V
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 322 APRLVVKPFDMRAPAGS---SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--GS 376
            P    +P     P GS    V + C+    P     W  +  E     + +        
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDV 402
           +    +  +D+G Y+C A+N  G  V
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVV 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 6e-14
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 48  FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLNG 105
            + +P S T   G ++R +C  +G P+P +TW   G   S  +   VT         ++ 
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
           V+ SD G Y+ V +NSEG  E+   + I
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 6e-14
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLNG 289
            + +P S T   G ++R +C  +G P+P +TW   G   S  +   VT         ++ 
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRI 317
           V+ SD G Y+ V +NSEG  E+   + I
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 7e-14
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLY 196
           R++ KP  M    G S    C  DGEP+P ++W +          H++  T    +  + 
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
           ++   D G Y     N  G+  AE  LT+
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 7e-14
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 324 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLY 380
           R++ KP  M    G S    C  DGEP+P ++W +          H++  T    +  + 
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 381 NIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           ++   D G Y     N  G+  AE  LT+
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 1e-13
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 15/104 (14%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--------------- 89
           P +    P + +   G      C V     P + W        S                
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 90  DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
              T + +  VL +  V   DAG Y C+A NS G +   A + +
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 1e-13
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 15/104 (14%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--------------- 273
           P +    P + +   G      C V     P + W        S                
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
              T + +  VL +  V   DAG Y C+A NS G +   A + +
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD----------------EAEF 179
           HR       P +     G  VE  CK   +  P I W K                 +   
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
               N        L + N+  +D+G Y C A N +G      +LTV
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD----------------EAEF 363
           HR       P +     G  VE  CK   +  P I W K                 +   
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 364 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
               N        L + N+  +D+G Y C A N +G      +LTV
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 64.1 bits (155), Expect = 4e-13
 Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS--- 192
           H  P       DM    GS+    CK +G P P + W KD+    E R+ +I        
Sbjct: 6   HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 65

Query: 193 -LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            L +  +   D   Y C A N LGE      L V
Sbjct: 66  SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 64.1 bits (155), Expect = 4e-13
 Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS--- 376
           H  P       DM    GS+    CK +G P P + W KD+    E R+ +I        
Sbjct: 6   HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 65

Query: 377 -LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            L +  +   D   Y C A N LGE      L V
Sbjct: 66  SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 63.8 bits (154), Expect = 5e-13
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--- 98
            +  P F +  +      GS +R  C VEG+P P++ WF D N +    H   ++D    
Sbjct: 5   PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64

Query: 99  FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
             L ++ V   D   Y C A NS G A   A + +
Sbjct: 65  CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 63.8 bits (154), Expect = 6e-13
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVL 285
            P F +  +      GS +R  C VEG+P P++ WF D N +    H   ++D      L
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            ++ V   D   Y C A NS G A   A + +
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDH----------VT 93
           PP      V ++ + G+ + +TC   +G P  + +WF DG S+ + D            T
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 94  YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
            +     L+ + V   D+G Y C AQN  G+A       ++
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDH----------VT 277
           PP      V ++ + G+ + +TC   +G P  + +WF DG S+ + D            T
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 278 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
            +     L+ + V   D+G Y C AQN  G+A       ++
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 4e-08
 Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 12/100 (12%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRT------- 190
           P             G+   + C   DG P    SW KD    +     K           
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 191 ----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
               G L    +   DSG Y C A N  G  +      + 
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 4e-08
 Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 12/100 (12%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRT------- 374
           P             G+   + C   DG P    SW KD    +     K           
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 375 ----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
               G L    +   DSG Y C A N  G  +      + 
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
             + ++   S +   G+     C  +   P   + W    N       + +     +L +
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG---ILTI 58

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
             V+ SDAG Y C   N     +  A + +
Sbjct: 59  RNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 287
             + ++   S +   G+     C  +   P   + W    N       + +     +L +
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG---ILTI 58

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
             V+ SDAG Y C   N     +  A + +
Sbjct: 59  RNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 142 VVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 200
           V +        G+ V   C      P   + W++     +  R    +  G L + N+ P
Sbjct: 6   VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN--GILTIRNVQP 63

Query: 201 QDSGLYRCTASNLLGEDVAEGYLTV 225
            D+G Y CT SN+   D     L V
Sbjct: 64  SDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 326 VVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 384
           V +        G+ V   C      P   + W++     +  R    +  G L + N+ P
Sbjct: 6   VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN--GILTIRNVQP 63

Query: 385 QDSGLYRCTASNLLGEDVAEGYLTV 409
            D+G Y CT SN+   D     L V
Sbjct: 64  SDAGTYVCTGSNMFAMDQGTATLHV 88

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 4e-12
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 145 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-----HRTGSLRLYNIG 199
           P  +    G  V++ C  +G   P I W KD A         I     H  G L L ++ 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 200 PQDSGLYRCTASNLLGEDV-AEGYLTVTG 227
             D+G Y C   +    ++    +LTV G
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 4e-12
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-----HRTGSLRLYNIG 383
           P  +    G  V++ C  +G   P I W KD A         I     H  G L L ++ 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 384 PQDSGLYRCTASNLLGEDV-AEGYLTVTG 411
             D+G Y C   +    ++    +LTV G
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 3e-11
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 52  PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLVLNGVR 107
           PV  T S G   ++ C VEG   P + W  DG  + + D +            L L  V 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 108 ESDAGVYNCVAQNSEGSAES-VAMIRING 135
            SDAG Y C  ++   +  S    + + G
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 3e-11
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLVLNGVR 291
           PV  T S G   ++ C VEG   P + W  DG  + + D +            L L  V 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 292 ESDAGVYNCVAQNSEGSAES-VAMIRING 319
            SDAG Y C  ++   +  S    + + G
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.7 bits (146), Expect = 5e-12
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLN 104
            +F   P    +  G  + I C V     P + W H G  +     V +       L + 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
           G++++D G Y C  +       +   I++ 
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.7 bits (146), Expect = 5e-12
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLN 288
            +F   P    +  G  + I C V     P + W H G  +     V +       L + 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           G++++D G Y C  +       +   I++ 
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 2/90 (2%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSLRLY 196
                 P       G    I C       P I W     +    +D    +     L++ 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
            I   D G YRC    L   ++    + V 
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 2/90 (2%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSLRLY 380
                 P       G    I C       P I W     +    +D    +     L++ 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 381 NIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
            I   D G YRC    L   ++    + V 
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDH---------VTY 94
           PP      + ++ + G+ + +TC   +G P  + TWF DG  + ++              
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 95  EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
                 LV + +  SD G Y+C A+N  G+  +   +R+ 
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDH---------VTY 278
           PP      + ++ + G+ + +TC   +G P  + TWF DG  + ++              
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
                 LV + +  SD G Y+C A+N  G+  +   +R+ 
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 7e-09
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKI---------- 187
           P          A  G+   + C   DG P    +W KD      +               
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
             TG L    +   D+G Y C A N  G  +    + +
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 7e-09
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKI---------- 371
           P          A  G+   + C   DG P    +W KD      +               
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             TG L    +   D+G Y C A N  G  +    + +
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDHVTY-------EH 96
             ++I+R    +   G    + C V+     P +TW     +                  
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127
             F+L    V  +D G Y C A       ES
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIES 93

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDHVTY-------EH 280
             ++I+R    +   G    + C V+     P +TW     +                  
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
             F+L    V  +D G Y C A       ES
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIES 93

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 10/100 (10%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNHKIHRTGS--- 192
                + +  +    AG   E+ C        P ++W K           +         
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 193 -----LRLYNIGPQDSGLYRCTASNLLGEDVAEGY-LTVT 226
                L    + P D+G YRC+A+       +    L VT
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 10/100 (10%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNHKIHRTGS--- 376
                + +  +    AG   E+ C        P ++W K           +         
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 377 -----LRLYNIGPQDSGLYRCTASNLLGEDVAEGY-LTVT 410
                L    + P D+G YRC+A+       +    L VT
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 6e-11
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF-----HDGNSLDSDDHVTYEHDGF 99
            P F+ R  +   + G  +   C   G  +     +          L      +      
Sbjct: 2   TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAES 127
              +    + DAG Y C+ +   G   S
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGIS 88

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 6e-11
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF-----HDGNSLDSDDHVTYEHDGF 283
            P F+ R  +   + G  +   C   G  +     +          L      +      
Sbjct: 2   TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAES 311
              +    + DAG Y C+ +   G   S
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGIS 88

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN------HKIHRT 190
           R P  + +  ++   AG      C   G  +          +  +               
Sbjct: 1   RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTV 225
            S  + N   +D+G YRC      G  ++    L V
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN------HKIHRT 374
           R P  + +  ++   AG      C   G  +          +  +               
Sbjct: 1   RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTV 409
            S  + N   +D+G YRC      G  ++    L V
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 8e-11
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 47  IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLV 102
           +  ++   TT   G    + C V       + WF +G  +         +  E    +L+
Sbjct: 2   MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 103 LNGVRESDAGVYNCVAQNSEGSAE 126
           + G  ++DA  Y+ +    + SA+
Sbjct: 61  IEGATKADAAEYSVMTTGGQSSAK 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 8e-11
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLV 286
           +  ++   TT   G    + C V       + WF +G  +         +  E    +L+
Sbjct: 2   MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 287 LNGVRESDAGVYNCVAQNSEGSAE 310
           + G  ++DA  Y+ +    + SA+
Sbjct: 61  IEGATKADAAEYSVMTTGGQSSAK 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 141 LVVKPF-DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-----HRTGSLR 194
           +V K   D  A  G  VE+ C+        + W K+  E +     +       +   L 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
           +      D+  Y    +       +   L+V
Sbjct: 61  IEGATKADAAEYSVMTTG----GQSSAKLSV 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 325 LVVKPF-DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-----HRTGSLR 378
           +V K   D  A  G  VE+ C+        + W K+  E +     +       +   L 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           +      D+  Y    +       +   L+V
Sbjct: 61  IEGATKADAAEYSVMTTG----GQSSAKLSV 87

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 8e-11
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 20/108 (18%)

Query: 52  PVSTTYSTGSTSRITCL---VEGHPLPQMTWFHDGNSLDSDDHV---------TYEHDGF 99
           P S    T       C+   V+G P P + W  +G+ L+    +                
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD 147
            L LN     + G Y  +A N  G A +  M           +  PF+
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF--------MDNPFE 103

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 8e-11
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 20/108 (18%)

Query: 236 PVSTTYSTGSTSRITCL---VEGHPLPQMTWFHDGNSLDSDDHV---------TYEHDGF 283
           P S    T       C+   V+G P P + W  +G+ L+    +                
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD 331
            L LN     + G Y  +A N  G A +  M           +  PF+
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF--------MDNPFE 103

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 145 PFDMRAPAGSSVE---IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTG 191
           P  ++      +    IP   DG+P P + W  + +   E                 R G
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
            LRL      ++G Y   A+N  G+  A         P  F
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEF 104

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 6e-08
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 329 PFDMRAPAGSSVE---IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTG 375
           P  ++      +    IP   DG+P P + W  + +   E                 R G
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
            LRL      ++G Y   A+N  G+  A        
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 8/45 (17%), Positives = 14/45 (31%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ 50
               L ++     + G Y+ +A NP G     +       P    
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFN 105

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 329 PFDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
            F  + P      + C      K +   LP++ W KD    + D  H       L + N+
Sbjct: 6   IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV 65

Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
             +  G Y C AS             +      E  P
Sbjct: 66  AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKP 102

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 7e-10
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 6/88 (6%)

Query: 145 PFDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
            F  + P      + C      K +   LP++ W KD    + D  H       L + N+
Sbjct: 6   IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV 65

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVT 226
             +  G Y C AS             + 
Sbjct: 66  AEKHRGNYTCHASYTYLGKQYPITRVIE 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 43  NAPPIFIQRPVSTTYSTGSTSRITCL------VEGHPLPQMTWFHDGNSLDSDDHVTYEH 96
           NA  IF Q+             + C        E + LP++ W+ D   L  D+   +  
Sbjct: 2   NAQAIFKQKLP-----VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSG 55

Query: 97  DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
               L++  V E   G Y C A  +    +      I 
Sbjct: 56  VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 244 GSTSRITCL------VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 297
                + C        E + LP++ W+ D   L  D+   +      L++  V E   G 
Sbjct: 14  AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSGVKDRLIVMNVAEKHRGN 72

Query: 298 YNCVAQNSEGSAESVAMIRIN 318
           Y C A  +    +      I 
Sbjct: 73  YTCHASYTYLGKQYPITRVIE 93

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-10
 Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 36/125 (28%)

Query: 45  PPIFI-----QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--------- 90
           PP        + P +     G+  R+   + G P P + W       +            
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 91  ----------------------HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 128
                                  V    D  +  + G  + D GVY    +N  G  +  
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 123

Query: 129 AMIRI 133
             +++
Sbjct: 124 LTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-10
 Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 36/125 (28%)

Query: 229 PPIFI-----QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--------- 274
           PP        + P +     G+  R+   + G P P + W       +            
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 275 ----------------------HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
                                  V    D  +  + G  + D GVY    +N  G  +  
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 123

Query: 313 AMIRI 317
             +++
Sbjct: 124 LTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 32/114 (28%)

Query: 144 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG------------ 191
            P  +   AG+ + +     G+P P + W K   +  +                      
Sbjct: 15  IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 74

Query: 192 --------------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
                                  +     +D G+Y  T  N +GED     + V
Sbjct: 75  KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 32/114 (28%)

Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG------------ 375
            P  +   AG+ + +     G+P P + W K   +  +                      
Sbjct: 15  IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 74

Query: 376 --------------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
                                  +     +D G+Y  T  N +GED     + V
Sbjct: 75  KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 7   STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
            +   + G ++E  G Y+    NP G  + +L V V
Sbjct: 93  RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 14/103 (13%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNS-----------LDSDD 90
             +F+ RP     + G +   +  V G  L   P + WF                L    
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 91  HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
               +   F L +   + +  G Y C     +    S   + +
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 14/103 (13%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNS-----------LDSDD 274
             +F+ RP     + G +   +  V G  L   P + WF                L    
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 275 HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
               +   F L +   + +  G Y C     +    S   + +
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 15/106 (14%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNHKIHR----- 189
               V++P D     G S+    +  G  L   P + W K +   +  +  +  +     
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 190 -------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
                     L + +  P  +G YRC  S     D +   LTV  A
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA 109

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNHKIHR----- 373
               V++P D     G S+    +  G  L   P + W K +   +  +  +  +     
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 374 -------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                     L + +  P  +G YRC  S     D +   LTV 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLV 102
            P+   +P    +   + + + C++EG+       +          + +     D   LV
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 103 LNGVRESDAGVYNCVAQNSEGSAES 127
               + SD G Y C A+   G A S
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASS 86

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLV 286
            P+   +P    +   + + + C++EG+       +          + +     D   LV
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 287 LNGVRESDAGVYNCVAQNSEGSAES 311
               + SD G Y C A+   G A S
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASS 86

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE---DRNHKIHRTGSL 193
           + P L  +P ++     +   + C  +G         K + +               GSL
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 194 RLYNIGPQDSGLYRCTASNLLGE 216
                   D G Y+C A    G 
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGV 83

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE---DRNHKIHRTGSL 377
           + P L  +P ++     +   + C  +G         K + +               GSL
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 378 RLYNIGPQDSGLYRCTASNLLGE 400
                   D G Y+C A    G 
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGV 83

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 194
            P+++     ++  AG +  +     G P P  +W+  ++         +       S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
             +    DSG Y+    N LGED A   + V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 378
            P+++     ++  AG +  +     G P P  +W+  ++         +       S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             +    DSG Y+    N LGED A   + V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVLV 102
            P  +          G T  +     G P P  TW    +       +  +       + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
               + +D+G Y    +N  G  E++  + +
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVLV 286
            P  +          G T  +     G P P  TW    +       +  +       + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
               + +D+G Y    +N  G  E++  + +
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 9e-10
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ---------MTWFHDGNSLDSDDHVTYE 95
           PP       S   + G T+ + C  E  P                   N  +S   V+  
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 96  HDGFVLVLNGVRESD-AGVYNCVAQNSEGSAESVAMIRI 133
                L +  +      G Y C   +S+GS +++  +R+
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 9e-10
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ---------MTWFHDGNSLDSDDHVTYE 279
           PP       S   + G T+ + C  E  P                   N  +S   V+  
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 280 HDGFVLVLNGVRESD-AGVYNCVAQNSEGSAESVAMIRI 317
                L +  +      G Y C   +S+GS +++  +R+
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
           PR+           G +  + CK +  P P   W+  +    ED+           + + 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVP-PVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 199 G------------PQDSGLYRCTASNLLGEDVAEGYLTV 225
                          D G YRC  ++  G D A   L V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
           PR+           G +  + CK +  P P   W+  +    ED+           + + 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVP-PVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 383 G------------PQDSGLYRCTASNLLGEDVAEGYLTV 409
                          D G YRC  ++  G D A   L V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 15/105 (14%)

Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNHKIHR--------- 189
           + KP       G  +    K   E L   P I W K +   +  +  K  +         
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 190 ---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
              T  +++       +G YRC  +     D     L V  +   
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 326 VVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNHKIHR--------- 373
           + KP       G  +    K   E L   P I W K +   +  +  K  +         
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 374 ---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
              T  +++       +G YRC  +     D     L V       P
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 14/102 (13%)

Query: 47  IFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNSLDSDDH-----------V 92
           +FI++P   T   G        V+   L   P + WF       +               
Sbjct: 2   LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61

Query: 93  TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
                 F + +   +++ AG Y C     +        + ++
Sbjct: 62  HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 103

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 14/102 (13%)

Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNSLDSDDH-----------V 276
           +FI++P   T   G        V+   L   P + WF       +               
Sbjct: 2   LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61

Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
                 F + +   +++ AG Y C     +        + ++
Sbjct: 62  HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 103

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 6/41 (14%), Positives = 11/41 (26%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
            + E+ I   +    G Y C              + V+   
Sbjct: 66  YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH----DGFV 100
            P ++ + +      G  + I C+   +P+    +F +G  ++ +            G  
Sbjct: 5   VPQYVSKDMMAK--AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
           L+       D GVY C   N  G  +  ++
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSL 92

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH----DGFV 284
            P ++ + +      G  + I C+   +P+    +F +G  ++ +            G  
Sbjct: 5   VPQYVSKDMMAK--AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
           L+       D GVY C   N  G  +  ++
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSL 92

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-----NHKIHR 189
           G   P+ V K  DM A AG    I C     P+   ++ K+  +   +       H    
Sbjct: 2   GEPVPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 59

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTV 225
              L      P+D G+Y C   N +G+       LTV
Sbjct: 60  GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-----NHKIHR 373
           G   P+ V K  DM A AG    I C     P+   ++ K+  +   +       H    
Sbjct: 2   GEPVPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 59

Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTV 409
              L      P+D G+Y C   N +G+       LTV
Sbjct: 60  GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 4e-09
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY------ 94
           TV  PP  +               I  +V G+P P + W H+G  L     +        
Sbjct: 1   TVYYPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57

Query: 95  EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
           E     L+ N     + G Y  +A+N  G+A             P
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 102

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 9e-08
 Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 7/79 (8%)

Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------RTGSLRLYNIGPQDSGLYRCTA 210
           I     G P P + W  +     E +   +          G L        ++G Y   A
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 211 SNLLGEDVAEGYLTVTGAP 229
            N LG             P
Sbjct: 82  KNPLGTANQTINGHFLKEP 100

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 9/101 (8%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY------EHDG 282
           PP  +               I  +V G+P P + W H+G  L     +        E   
Sbjct: 5   PPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 61

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
             L+ N     + G Y  +A+N  G+A             P
Sbjct: 62  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 102

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 7/77 (9%)

Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------RTGSLRLYNIGPQDSGLYRCTA 394
           I     G P P + W  +     E +   +          G L        ++G Y   A
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 395 SNLLGEDVAEGYLTVTG 411
            N LG            
Sbjct: 82  KNPLGTANQTINGHFLK 98

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 4e-09
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 138 APRLVVK--PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
            PRL  +  P +   P  S     C+  G PLP +   K                     
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK----------DGTFPLPIGES 51

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
             +     G Y C A +  GE   E  + V
Sbjct: 52  VTVTRDLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 4e-09
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 322 APRLVVK--PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
            PRL  +  P +   P  S     C+  G PLP +   K                     
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK----------DGTFPLPIGES 51

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
             +     G Y C A +  GE   E  + V
Sbjct: 52  VTVTRDLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 45  PPIFIQR--PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
            P   +R  P + T+   S     C   G+PLP++    DG                   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTR----- 56

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
                    G Y C A++++G       + +
Sbjct: 57  ------DLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 229 PPIFIQR--PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
            P   +R  P + T+   S     C   G+PLP++    DG                   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTR----- 56

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
                    G Y C A++++G       + +
Sbjct: 57  ------DLEGTYLCRARSTQGEVTREVTVNV 81

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 7e-09
 Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 11/104 (10%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH------- 188
           H AP +          +     IP    G P P + W  + A   E +            
Sbjct: 2   HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58

Query: 189 -RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
              G L+L N    ++G Y   A N  G+D  +      G P I
Sbjct: 59  EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-- 99
           V+  P        T+        I   V+G+P P + WF++G  L+   ++  +      
Sbjct: 1   VHFAPTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 100 -----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
                 L L+     + G Y  +A+N  G  E        G
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 236 PVSTTYSTGSTSRITCL---VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-------VL 285
           P  T   + ++    C+   V+G+P P + WF++G  L+   ++  +            L
Sbjct: 5   PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCL 64

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
            L+     + G Y  +A+N  G  E        G
Sbjct: 65  QLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH------- 372
           H AP +          +     IP    G P P + W  + A   E +            
Sbjct: 2   HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58

Query: 373 -RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
              G L+L N    ++G Y   A N  G+D  +      G   ++
Sbjct: 59  EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 8e-09
 Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 11/110 (10%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF-------HDGNSLDSDDHV 92
           +TVN PP  I    +     G   +I C +   P P    +         G S       
Sbjct: 2   LTVNGPP-IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60

Query: 93  TYEHDGFVLVL---NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
               +G +  L   N VR     +YNC A NS GS   +  ++  G    
Sbjct: 61  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 110

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------- 372
             P ++       A  G   +I C     P P       +   +E      +        
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 373 --RTGSLRLYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
                +L + NI       +Y CTA N  G D     L   G     P+
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 11/105 (10%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------- 188
             P ++       A  G   +I C     P P       +   +E      +        
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 189 --RTGSLRLYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
                +L + NI       +Y CTA N  G D     L   G+  
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 109

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF-------HDGNSLDSDDH 275
           LTV   PP  I    +     G   +I C +   P P    +         G S      
Sbjct: 2   LTVN-GPP-IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 59

Query: 276 VTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
                +G +  L   N VR     +YNC A NS GS   +  ++  G    
Sbjct: 60  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 110

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 45  PPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFV 100
              F ++   +   S G   R+T  +      ++ W  +G  +                 
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAE 126
           L ++    +D   Y CV    + S E
Sbjct: 64  LTISQCSLADDAAYQCVVGGEKCSTE 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 229 PPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFV 284
              F ++   +   S G   R+T  +      ++ W  +G  +                 
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAE 310
           L ++    +D   Y CV    + S E
Sbjct: 64  LTISQCSLADDAAYQCVVGGEKCSTE 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 10/94 (10%)

Query: 137 RAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTG 191
           ++     K     +   G  + +  +        + W K+  E     +  I        
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62

Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
           +L +      D   Y+C        +     L V
Sbjct: 63  TLTISQCSLADDAAYQCVVGG----EKCSTELFV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 10/94 (10%)

Query: 321 RAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTG 375
           ++     K     +   G  + +  +        + W K+  E     +  I        
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62

Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
           +L +      D   Y+C        +     L V
Sbjct: 63  TLTISQCSLADDAAYQCVVGG----EKCSTELFV 92

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 12/86 (13%)

Query: 153 GSSVEIPCK--PDGEPLPRISWSK----------DEAEFVEDRNHKIHRTGSLRLYNIGP 200
           G  + +        + +  + W +              F++    +I   G L++ N+  
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69

Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVT 226
            DSG Y  T  +  G  +    L + 
Sbjct: 70  DDSGTYNVTVYSTNGTRILNKALDLR 95

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 12/86 (13%)

Query: 337 GSSVEIPCK--PDGEPLPRISWSK----------DEAEFVEDRNHKIHRTGSLRLYNIGP 384
           G  + +        + +  + W +              F++    +I   G L++ N+  
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69

Query: 385 QDSGLYRCTASNLLGEDVAEGYLTVT 410
            DSG Y  T  +  G  +    L + 
Sbjct: 70  DDSGTYNVTVYSTNGTRILNKALDLR 95

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 1/86 (1%)

Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
           L     P   + R V T+   G +  +TC            +             +   G
Sbjct: 1   LAPRRCPAQEVARGVLTSLP-GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59

Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGS 308
             L+L  V+  D+G Y+C        
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGRPAG 85

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 13/85 (15%), Positives = 22/85 (25%)

Query: 40  VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
           +     P         T   G +  +TC            +             +   G 
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR 60

Query: 100 VLVLNGVRESDAGVYNCVAQNSEGS 124
            L+L  V+  D+G Y+C        
Sbjct: 61  RLLLRSVQLHDSGNYSCYRAGRPAG 85

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
            R P   V    + +  G SV + C   + E    + W   +       +        L 
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63

Query: 195 LYNIGPQDSGLYRCTASNLLG 215
           L ++   DSG Y C  +    
Sbjct: 64  LRSVQLHDSGNYSCYRAGRPA 84

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
            R P   V    + +  G SV + C   + E    + W   +       +        L 
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63

Query: 379 LYNIGPQDSGLYRCTASNLLG 399
           L ++   DSG Y C  +    
Sbjct: 64  LRSVQLHDSGNYSCYRAGRPA 84

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 4/95 (4%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDG---EPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
            R+ + P     P G  + + C+ +G        +   + E E   +         +  +
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
                     + C     L     E +   + AP 
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLELFENTS-APY 98

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 3/91 (3%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDG---EPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
            R+ + P     P G  + + C+ +G        +   + E E   +         +  +
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                     + C     L     E +   +
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLELFENTS 95

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 4/92 (4%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 101
           P      P+ +    G    + C VEG        +        L  +  V    +    
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEV-TT 62

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
            +   R+     ++C  +              
Sbjct: 63  TVLVRRDHHGAQFSCRTELDLRPQGLELFENT 94

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 4/92 (4%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
           P      P+ +    G    + C VEG        +        L  +  V    +    
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEV-TT 62

Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            +   R+     ++C  +              
Sbjct: 63  TVLVRRDHHGAQFSCRTELDLRPQGLELFENT 94

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 4  RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
            +     +   +  HG ++SC           +L    +AP 
Sbjct: 56 EPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPY 98

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 4/90 (4%)

Query: 145 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIGP 200
              + + A      PC     E    I+W KD+++                 L       
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 68

Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
           +DSG Y C   N       +         P
Sbjct: 69  EDSGHYYCVVRNSSYCLRIKISAKFVENEP 98

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 4/85 (4%)

Query: 329 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIGP 384
              + + A      PC     E    I+W KD+++                 L       
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 68

Query: 385 QDSGLYRCTASNLLGEDVAEGYLTV 409
           +DSG Y C   N       +     
Sbjct: 69  EDSGHYYCVVRNSSYCLRIKISAKF 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 6e-07
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 52  PVSTTYSTGSTSRITC-LVEGHPLPQMTWFHD--GNSLDSDDHVTYEHDGFVLVLNGVRE 108
            +    S        C L        +TW+ D     + ++           L     + 
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 68

Query: 109 SDAGVYNCVAQNSEGSAESVAMIRI 133
            D+G Y CV +NS          + 
Sbjct: 69  EDSGHYYCVVRNSSYCLRIKISAKF 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 6e-07
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 236 PVSTTYSTGSTSRITC-LVEGHPLPQMTWFHD--GNSLDSDDHVTYEHDGFVLVLNGVRE 292
            +    S        C L        +TW+ D     + ++           L     + 
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 68

Query: 293 SDAGVYNCVAQNSEGSAESVAMIRI 317
            D+G Y CV +NS          + 
Sbjct: 69  EDSGHYYCVVRNSSYCLRIKISAKF 93

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 5e-08
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-LVL 103
            P    +  + +   G    + C VEG  L Q  W        +    +         + 
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 61

Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
           N   + +     C A+N  G AE    + ++
Sbjct: 62  NVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 5e-08
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-LVL 287
            P    +  + +   G    + C VEG  L Q  W        +    +         + 
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 61

Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
           N   + +     C A+N  G AE    + ++
Sbjct: 62  NVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYN 197
           P L V+  +     G  V + C+ +G  L +  W   E E            +  L L N
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 198 IGP-QDSGLYRCTASNLLGEDVAEGYLTVT 226
           +    +     C A N +G       + V+
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYN 381
           P L V+  +     G  V + C+ +G  L +  W   E E            +  L L N
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 382 IGP-QDSGLYRCTASNLLGEDVAEGYLTVT 410
           +    +     C A N +G       + V+
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 1e-07
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW-----------SKDEAEFVEDRNHKI 187
             +     D++ P   S+++ C   G   PR+ W             +        +   
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
             +  +   ++  +D+G Y C  S   G++  E  + +T
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 1e-07
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW-----------SKDEAEFVEDRNHKI 371
             +     D++ P   S+++ C   G   PR+ W             +        +   
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
             +  +   ++  +D+G Y C  S   G++  E  + +T
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 11/100 (11%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD----------GNSLDSDDHVTY 94
             ++  +          + ++TC   G   P++ W              + + +      
Sbjct: 2   GSVYTAQS-DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 95  EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
                 +  + V   D G Y C+     G       I + 
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 11/100 (11%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD----------GNSLDSDDHVTY 278
             ++  +          + ++TC   G   P++ W              + + +      
Sbjct: 2   GSVYTAQS-DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
                 +  + V   D G Y C+     G       I + 
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 6   SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN 43
           SS+ +  S V R+  G Y+C+     G   G++ + + 
Sbjct: 63  SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
           P F   P        +  +++C          + W+     +                 N
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVL-------N 54

Query: 105 GVRESDAGVYNCVAQNSEGSAES-VAMIRI 133
               + + +++C A N +G A S  A + +
Sbjct: 55  VTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
           P F   P        +  +++C          + W+     +                 N
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVL-------N 54

Query: 289 GVRESDAGVYNCVAQNSEGSAES-VAMIRI 317
               + + +++C A N +G A S  A + +
Sbjct: 55  VTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
           P   V+P D+  P  +  ++ C+         I W +   +                   
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN------V 55

Query: 198 IGPQDSGLYRCTASNLLGEDV-AEGYLTV 225
            G   S ++ C A NL G        + +
Sbjct: 56  TGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
           P   V+P D+  P  +  ++ C+         I W +   +                   
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN------V 55

Query: 382 IGPQDSGLYRCTASNLLGEDV-AEGYLTV 409
            G   S ++ C A NL G        + +
Sbjct: 56  TGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 5e-07
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 16/92 (17%)

Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-------------TGSL 193
            +      +V     P   PL  + W K + +  E  N +                +GSL
Sbjct: 4   QIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
            +YN+   D   Y   + N+      + +L V
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDT--MKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 5e-07
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 16/92 (17%)

Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-------------TGSL 377
            +      +V     P   PL  + W K + +  E  N +                +GSL
Sbjct: 4   QIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
            +YN+   D   Y   + N+      + +L V
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDT--MKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 6/62 (9%), Positives = 18/62 (29%)

Query: 65  ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
           +    +   + ++            + V  +     L +  +  SD   Y   + N   +
Sbjct: 26  VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDT 85

Query: 125 AE 126
            +
Sbjct: 86  MK 87

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 6/62 (9%), Positives = 18/62 (29%)

Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
           +    +   + ++            + V  +     L +  +  SD   Y   + N   +
Sbjct: 26  VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDT 85

Query: 309 AE 310
            +
Sbjct: 86  MK 87

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-07
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----- 99
           P I      +     GS  ++ C V G       W  +G+ +D DD V  E         
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 100 ---------VLVLNGVRESDAGV-YNCVAQNSEGSAESVAMIR 132
                    VL ++ +        + C A+N+ G   +   + 
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 104

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-07
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----- 283
           P I      +     GS  ++ C V G       W  +G+ +D DD V  E         
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 284 ---------VLVLNGVRESDAGV-YNCVAQNSEGSAESVAMIR 316
                    VL ++ +        + C A+N+ G   +   + 
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 104

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 17/104 (16%)

Query: 139 PRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--------- 188
           P +V    + M    GS +++ C   G+      W  + +   ED               
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 189 ------RTGSLRLYNIGPQDSG-LYRCTASNLLGEDVAEGYLTV 225
                     L +  I  +     + C A N  G D A   L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 17/104 (16%)

Query: 323 PRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--------- 372
           P +V    + M    GS +++ C   G+      W  + +   ED               
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 373 ------RTGSLRLYNIGPQDSG-LYRCTASNLLGEDVAEGYLTV 409
                     L +  I  +     + C A N  G D A   L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW-----------SKDEAEFVEDRNHK 186
           +  +     ++R P  + V++ C   G   PR+ W             +        +  
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
                 +   ++  +D+G Y C  S   G    E  + + 
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW-----------SKDEAEFVEDRNHK 370
           +  +     ++R P  + V++ C   G   PR+ W             +        +  
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                 +   ++  +D+G Y C  S   G    E  + + 
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 17/109 (15%)

Query: 219 AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD----------GN 268
           A G +TV  + P              +  +++C   G   P++ W  D           N
Sbjct: 1   AMGSVTVHSSEP-------EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNN 53

Query: 269 SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
            + +            +    V   D G Y C+     G++     +++
Sbjct: 54  KITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 10/100 (10%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD----------GNSLDSDDHVT 93
                            +  +++C   G   P++ W  D           N + +     
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 94  YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
                  +    V   D G Y C+     G++     +++
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 48  FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT--YEHDGFVLVLNG 105
             +         G T+     +   P     W   G  L +        +    +L+L+ 
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 106 VRESDAGVYNCVAQNSEGSAE 126
            +    G  +  A N++ +A 
Sbjct: 63  CQLGMTGEVSFQAANAKSAAN 83

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT--YEHDGFVLVLNG 289
             +         G T+     +   P     W   G  L +        +    +L+L+ 
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 290 VRESDAGVYNCVAQNSEGSAE 310
            +    G  +  A N++ +A 
Sbjct: 63  CQLGMTGEVSFQAANAKSAAN 83

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 142 VVKPF-DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLYN 197
           V KP   +    G +     +   EP     W           + +I    +   L L+N
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
                +G     A+N      +   L V 
Sbjct: 63  CQLGMTGEVSFQAAN----AKSAANLKVK 87

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 326 VVKPF-DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLYN 381
           V KP   +    G +     +   EP     W           + +I    +   L L+N
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                +G     A+N      +   L V 
Sbjct: 63  CQLGMTGEVSFQAAN----AKSAANLKVK 87

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 7/81 (8%)

Query: 46  PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 105
           P     P       G    +TC          T +         +    E     L +  
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-------NGSLSEETNSSLNIVN 54

Query: 106 VRESDAGVYNCVAQNSEGSAE 126
            +  D+G Y C  Q    S  
Sbjct: 55  AKFEDSGEYKCQHQQVNESEP 75

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 7/81 (8%)

Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 289
           P     P       G    +TC          T +         +    E     L +  
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-------NGSLSEETNSSLNIVN 54

Query: 290 VRESDAGVYNCVAQNSEGSAE 310
            +  D+G Y C  Q    S  
Sbjct: 55  AKFEDSGEYKCQHQQVNESEP 75

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
           P++ + P   R   G +V + C  +       +         E+ N        L + N 
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------LNIVNA 55

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVT 226
             +DSG Y+C    +   +    YL V 
Sbjct: 56  KFEDSGEYKCQHQQVNESEPV--YLEVF 81

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
           P++ + P   R   G +V + C  +       +         E+ N        L + N 
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------LNIVNA 55

Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTVT 410
             +DSG Y+C    +   +    YL V 
Sbjct: 56  KFEDSGEYKCQHQQVNESEPV--YLEVF 81

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 54  STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
              +  G T+ + C  + +   ++ W      L ++           L++  + E D+GV
Sbjct: 6   QHFFKHGGTAELKCSQKSNL-ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGV 64

Query: 114 YNCVAQNSEGSAESVAMI 131
           Y C+++    +     ++
Sbjct: 65  YQCLSEERVKNKTVFQVV 82

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 297
              +  G T+ + C  + +   ++ W      L ++           L++  + E D+GV
Sbjct: 6   QHFFKHGGTAELKCSQKSNL-ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGV 64

Query: 298 YNCVAQNSEGSAESVAMI 315
           Y C+++    +     ++
Sbjct: 65  YQCLSEERVKNKTVFQVV 82

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 11/79 (13%), Positives = 26/79 (32%)

Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY 206
                 G + E+ C             ++     E   + +    +L ++N+   DSG+Y
Sbjct: 6   QHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVY 65

Query: 207 RCTASNLLGEDVAEGYLTV 225
           +C +   +        +  
Sbjct: 66  QCLSEERVKNKTVFQVVAK 84

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 11/79 (13%), Positives = 26/79 (32%)

Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY 390
                 G + E+ C             ++     E   + +    +L ++N+   DSG+Y
Sbjct: 6   QHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVY 65

Query: 391 RCTASNLLGEDVAEGYLTV 409
           +C +   +        +  
Sbjct: 66  QCLSEERVKNKTVFQVVAK 84

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 27/111 (24%)

Query: 149 RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------------------- 189
           RA  G   E+PC+                       H                       
Sbjct: 13  RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 72

Query: 190 -------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI 233
                    +LR+ N+   D G Y C   +   ++ A   L V   P  +I
Sbjct: 73  KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWI 122

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 5   RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFI 49
                L I  V+    G Y+C   + +      + + V  P  +I
Sbjct: 78  EGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWI 122

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 26/104 (25%)

Query: 333 RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------------------- 373
           RA  G   E+PC+                       H                       
Sbjct: 13  RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 72

Query: 374 -------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
                    +LR+ N+   D G Y C   +   ++ A   L V 
Sbjct: 73  KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 34/130 (26%)

Query: 41  TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ--------------MTWFHDGNSL 86
            V  P      P+      G  + + C +                     +  + +G   
Sbjct: 4   RVIGPG----HPIRAL--VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQ 57

Query: 87  DSDDHVTYEHDG-----------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
           D++    Y                 L +  VR SD G Y C  ++     E+   +++  
Sbjct: 58  DAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV-- 115

Query: 136 HRAPRLVVKP 145
              P   + P
Sbjct: 116 -EDPFYWINP 124

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 35/134 (26%)

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ--------------MTWFHD 266
           G   V G        P+      G  + + C +                     +  + +
Sbjct: 1   GQFRVIGPG-----HPIRAL--VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRN 53

Query: 267 GNSLDSDDHVTYEHDG-----------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315
           G   D++    Y                 L +  VR SD G Y C  ++     E+   +
Sbjct: 54  GKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

Query: 316 RINGHRAPRLVVKP 329
           ++     P   + P
Sbjct: 114 KV---EDPFYWINP 124

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 7/80 (8%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
             +    P   +     +  + C     P    T +         +            ++
Sbjct: 5   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWF-------HNESLISSQASSYFID 57

Query: 105 GVRESDAGVYNCVAQNSEGS 124
               +D+G Y C    S  S
Sbjct: 58  AATVNDSGEYRCQTNLSTLS 77

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 7/80 (8%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
             +    P   +     +  + C     P    T +         +            ++
Sbjct: 5   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWF-------HNESLISSQASSYFID 57

Query: 289 GVRESDAGVYNCVAQNSEGS 308
               +D+G Y C    S  S
Sbjct: 58  AATVNDSGEYRCQTNLSTLS 77

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
             + ++P         SV + C+    P    +        +  +           +   
Sbjct: 6   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYF------IDAA 59

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTV 225
              DSG YRC  +     D     L V
Sbjct: 60  TVNDSGEYRCQTNLSTLSDPV--QLEV 84

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
             + ++P         SV + C+    P    +        +  +           +   
Sbjct: 6   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYF------IDAA 59

Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTV 409
              DSG YRC  +     D     L V
Sbjct: 60  TVNDSGEYRCQTNLSTLSDPV--QLEV 84

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 8/97 (8%)

Query: 45  PPIFIQRPVS-TTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLDSDDHVTYEHDGF- 99
           PP  +   +  T  + G +  I C V          +  F    +L  +           
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 100 ---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
                     RE     ++C+A     S       + 
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 8/97 (8%)

Query: 229 PPIFIQRPVS-TTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLDSDDHVTYEHDGF- 283
           PP  +   +  T  + G +  I C V          +  F    +L  +           
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 284 ---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
                     RE     ++C+A     S       + 
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 14/101 (13%), Positives = 23/101 (22%), Gaps = 10/101 (9%)

Query: 139 PRLVVKPF-DMRAPAGSSVEIPCKPDG---EPLPRISWSKDEAEFVEDRNHKIHR----- 189
           PR V+          G S  I C+           +   +       +   K        
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
           T +             + C A   L       +   + AP 
Sbjct: 62  TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS-APK 101

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 12/97 (12%), Positives = 21/97 (21%), Gaps = 9/97 (9%)

Query: 323 PRLVVKPF-DMRAPAGSSVEIPCKPDG---EPLPRISWSKDEAEFVEDRNHKIHR----- 373
           PR V+          G S  I C+           +   +       +   K        
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
           T +             + C A   L       +   +
Sbjct: 62  TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 98

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 49  IQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 107
           + +  +     G    + C    +  + ++ ++ DG +      + Y ++   + +    
Sbjct: 4   LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA------LKYWYENHNISITNAT 57

Query: 108 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 140
             D+G Y C  +  +   ES   + I   +APR
Sbjct: 58  VEDSGTYYCTGKVWQLDYES-EPLNITVIKAPR 89

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 233 IQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
           + +  +     G    + C    +  + ++ ++ DG +      + Y ++   + +    
Sbjct: 4   LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA------LKYWYENHNISITNAT 57

Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
             D+G Y C  +  +   ES   + I   +APR
Sbjct: 58  VEDSGTYYCTGKVWQLDYES-EPLNITVIKAPR 89

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHK---IHRT 374
           G        +   ++   G  V   C  P   P     W  +E       + +      T
Sbjct: 1   GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 60

Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-----LTVTGENS 414
           G+L +      D G Y C A++ +       +     L++  E++
Sbjct: 61  GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 105

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 13/114 (11%)

Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVT 277
           G+L          +       + G     TC           +       N + +D    
Sbjct: 1   GFL-----QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRF 55

Query: 278 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD 331
                  L +     SD G Y+C A +                +  +L +   D
Sbjct: 56  VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFS-----KFSQLSLAAED 104

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 8/106 (7%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 101
                +       + G     TC           +       N + +D           L
Sbjct: 4   QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD 147
            +     SD G Y+C A +                +  +L +   D
Sbjct: 64  YIAKTEASDLGNYSCFATSHIDFITKSVFS-----KFSQLSLAAED 104

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHK---IHRT 190
           G        +   ++   G  V   C  P   P     W  +E       + +      T
Sbjct: 1   GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 60

Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
           G+L +      D G Y C A++ +       +   +
Sbjct: 61  GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFS 96

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ 201
            ++  +       SV + C  +            ++  + +R         LR+  I  +
Sbjct: 7   FLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRE 66

Query: 202 DSGLYRCTASNLLGEDVAEG-YLTVTGAP 229
           D+G Y+C  SN +    +    L +   P
Sbjct: 67  DAGEYQCEISNPVSVRRSNSIKLDIIFDP 95

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 42  VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 101
           V  P +   +  +TT     +  +TC +       + W  +  SL   + +T   +  +L
Sbjct: 3   VTQPFL---QVTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSIL 58

Query: 102 VLNGVRESDAGVYNCVAQNSEGSAES 127
            ++ ++  DAG Y C   N      S
Sbjct: 59  RIDPIKREDAGEYQCEISNPVSVRRS 84

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
           +  +TT     +  +TC +       + W  +  SL   + +T   +  +L ++ ++  D
Sbjct: 9   QVTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRED 67

Query: 295 AGVYNCVAQNSEGSAES 311
           AG Y C   N      S
Sbjct: 68  AGEYQCEISNPVSVRRS 84

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ 385
            ++  +       SV + C  +            ++  + +R         LR+  I  +
Sbjct: 7   FLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRE 66

Query: 386 DSGLYRCTASNLLGEDVAEG-YLTV 409
           D+G Y+C  SN +    +    L +
Sbjct: 67  DAGEYQCEISNPVSVRRSNSIKLDI 91

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 49  IQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 107
           + +     +  G T  + C      PL ++T+F +           +        +    
Sbjct: 4   VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQN------GKSKKFSRSDPNFSIPQAN 57

Query: 108 ESDAGVYNCVAQNSEGSAES-VAMIRING 135
            S +G Y+C          S    I +  
Sbjct: 58  HSHSGDYHCTGNIGYTLYSSKPVTITVQA 86

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 233 IQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
           + +     +  G T  + C      PL ++T+F +           +        +    
Sbjct: 4   VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQN------GKSKKFSRSDPNFSIPQAN 57

Query: 292 ESDAGVYNCVAQNSEGSAES-VAMIRING 319
            S +G Y+C          S    I +  
Sbjct: 58  HSHSGDYHCTGNIGYTLYSSKPVTITVQA 86

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 14/93 (15%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
           + P L  +        G ++ + C     +PL ++++ ++       R+           
Sbjct: 6   QTPHLEFQE-------GETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSI----- 53

Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTG 227
                  SG Y CT +       ++   +TV  
Sbjct: 54  PQANHSHSGDYHCTGNIGYTLYSSKPVTITVQA 86

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 14/93 (15%)

Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
           + P L  +        G ++ + C     +PL ++++ ++       R+           
Sbjct: 6   QTPHLEFQE-------GETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSI----- 53

Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTG 411
                  SG Y CT +       ++   +TV  
Sbjct: 54  PQANHSHSGDYHCTGNIGYTLYSSKPVTITVQA 86

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 9/83 (10%)

Query: 44  APP--IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 101
           APP  +    P         +  +TC     P      +         +           
Sbjct: 1   APPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWF-------HNGNLIPTHTQPS 53

Query: 102 VLNGVRESDAGVYNCVAQNSEGS 124
                  +D+G Y C    +  S
Sbjct: 54  YRFKANNNDSGEYTCQTGQTSLS 76

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 9/83 (10%)

Query: 228 APP--IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
           APP  +    P         +  +TC     P      +         +           
Sbjct: 1   APPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWF-------HNGNLIPTHTQPS 53

Query: 286 VLNGVRESDAGVYNCVAQNSEGS 308
                  +D+G Y C    +  S
Sbjct: 54  YRFKANNNDSGEYTCQTGQTSLS 76

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)

Query: 44  APPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
              + +Q P    +       + C    +  L ++T+  +           Y H      
Sbjct: 2   IGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQN------GKDRKYFHHNSDFH 54

Query: 103 LNGVRESDAGVYNCVAQNSEGSAES 127
           +      D+G Y C       +  S
Sbjct: 55  IPKATLKDSGSYFCRGLVGSKNVSS 79

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)

Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
              + +Q P    +       + C    +  L ++T+  +           Y H      
Sbjct: 2   IGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQN------GKDRKYFHHNSDFH 54

Query: 287 LNGVRESDAGVYNCVAQNSEGSAES 311
           +      D+G Y C       +  S
Sbjct: 55  IPKATLKDSGSYFCRGLVGSKNVSS 79

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 14/94 (14%)

Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
           +APR V K           + + C       L ++++ ++  +     ++         +
Sbjct: 8   QAPRWVFKE-------EDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDF-----HI 55

Query: 196 YNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGA 228
                +DSG Y C               +T+T A
Sbjct: 56  PKATLKDSGSYFCRGLVGSKNVSSETVNITITQA 89

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 50  QRPVS-TTYSTGSTSRITCLVEGHPLPQ--MTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 106
           Q     + +   + + + CLV+        +         + D  +     G    +   
Sbjct: 2   QPHTKPSVFVMKNGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLG 61

Query: 107 RESDAGVYNCVAQNS 121
           +  D+    C  Q+ 
Sbjct: 62  KYEDSNSVTCSVQHD 76

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 234 QRPVS-TTYSTGSTSRITCLVEGHPLPQ--MTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 290
           Q     + +   + + + CLV+        +         + D  +     G    +   
Sbjct: 2   QPHTKPSVFVMKNGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLG 61

Query: 291 RESDAGVYNCVAQNS 305
           +  D+    C  Q+ 
Sbjct: 62  KYEDSNSVTCSVQHD 76

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 5/91 (5%)

Query: 45  PPIFIQRPVSTTYSTGSTSRITCLV--EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
            P+ ++ P          SR              + W     S      V  +    VL 
Sbjct: 2   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS---LGAVQSDTGRSVLT 58

Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
           +     S AG   CV      + +    + +
Sbjct: 59  VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 5/91 (5%)

Query: 229 PPIFIQRPVSTTYSTGSTSRITCLV--EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
            P+ ++ P          SR              + W     S      V  +    VL 
Sbjct: 2   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS---LGAVQSDTGRSVLT 58

Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
           +     S AG   CV      + +    + +
Sbjct: 59  VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 140 RLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
           ++   P     A  G SV + C   G   P  SW       +  +      T +L +  +
Sbjct: 2   KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61

Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTV 225
              +   Y CTA+    +      + +
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEI 88

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 324 RLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
           ++   P     A  G SV + C   G   P  SW       +  +      T +L +  +
Sbjct: 2   KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61

Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTV 409
              +   Y CTA+    +      + +
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEI 88

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 47  IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 106
           I            G +  +TC   G   P  +W    +S   +  VT E     L +N V
Sbjct: 3   IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-PLNGKVTNEGTTSTLTMNPV 61

Query: 107 RESDAGVYNCVAQNSEGSAESVAMIRI 133
              +   Y C A       E    + I
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEI 88

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 290
           I            G +  +TC   G   P  +W    +S   +  VT E     L +N V
Sbjct: 3   IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-PLNGKVTNEGTTSTLTMNPV 61

Query: 291 RESDAGVYNCVAQNSEGSAESVAMIRI 317
              +   Y C A       E    + I
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEI 88

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 8/90 (8%)

Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG 199
            L     D     G S+ +  +      P +       + ++                + 
Sbjct: 2   GLTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSV-------SQLE 53

Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
            QDSG + CT      +   +  + V    
Sbjct: 54  LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 83

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 20/105 (19%)

Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-------------------VE 181
           + ++    +    ++V +        L   +W K                          
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTV 225
                I+  GSL    I  +D G+Y    ++       A     V
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 20/105 (19%)

Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-------------------VE 365
           + ++    +    ++V +        L   +W K                          
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTV 409
                I+  GSL    I  +D G+Y    ++       A     V
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 2   DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
           D +     + ++ +Q    G Y C      GV    +H+ V
Sbjct: 82  DLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 6/84 (7%)

Query: 50  QRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYE-----HDGFVLVL 103
             P     S G +    C V        ++WF       S +           D   L +
Sbjct: 5   IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 64

Query: 104 NGVRESDAGVYNCVAQNSEGSAES 127
                 DAG+Y CV    +G+   
Sbjct: 65  YNANIDDAGIYKCVVTAEDGTQSE 88

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 6/84 (7%)

Query: 234 QRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYE-----HDGFVLVL 287
             P     S G +    C V        ++WF       S +           D   L +
Sbjct: 5   IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 64

Query: 288 NGVRESDAGVYNCVAQNSEGSAES 311
                 DAG+Y CV    +G+   
Sbjct: 65  YNANIDDAGIYKCVVTAEDGTQSE 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	940
g1cxp.1	570	Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606	100.0
d1cvua1	511	Prostaglandin H2 synthase {Mouse (Mus musculus) [T	100.0
d1q4ga1	511	Prostaglandin H2 synthase {Sheep (Ovis aries) [Tax	99.98
g1cxp.1	570	Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606	99.83
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.49
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.48
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.48
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.48
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.46
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.46
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.44
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.44
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.42
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.4
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.39
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.37
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.37
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.36
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.34
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.33
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.32
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.32
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.32
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.32
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.31
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.31
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.31
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.29
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.29
d2avga1	110	Cardiac myosin binding protein C, different domain	99.28
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.28
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.28
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.27
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.27
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.27
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.26
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.25
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.25
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.25
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.25
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.25
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.25
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.25
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.24
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.23
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.23
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.22
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.22
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.22
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.22
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.21
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.21
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.2
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.2
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.2
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.17
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.16
d2avga1	110	Cardiac myosin binding protein C, different domain	99.16
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.16
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.15
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.15
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.15
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.15
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.14
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.14
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.14
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.13
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.12
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.12
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.11
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.11
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.1
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.1
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.1
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.1
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.09
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.09
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.09
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.08
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.08
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.07
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.07
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.06
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.05
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.04
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.04
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.04
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.03
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.03
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.02
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.02
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.0
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.0
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.99
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.99
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.98
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.97
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.96
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.95
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.94
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.94
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.94
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.93
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.93
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.92
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.91
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.9
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.89
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.88
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.88
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.88
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.83
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.82
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.8
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.71
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.69
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.66
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.48
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.48
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.48
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.42
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.35
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.25
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.21
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.18
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.04
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.04
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.01
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.93
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.88
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.87
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.86
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.85
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.8
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.8
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.79
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.79
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.79
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.78
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.77
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.76
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.75
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.75
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.74
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.73
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.72
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.72
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.71
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.71
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.7
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.69
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.69
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.69
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.69
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.68
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.68
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.68
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.66
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.66
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.65
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.64
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.64
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.63
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.63
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.62
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.62
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.62
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.61
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.59
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.59
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.59
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.58
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.57
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.57
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.57
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.56
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.55
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.55
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.53
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.53
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.52
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.52
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.51
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.51
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.51
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.5
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.49
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.49
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.49
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.49
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.48
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.48
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.48
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.47
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.46
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.45
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.44
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.44
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.44
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.44
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.42
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.42
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.41
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.4
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.4
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.37
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.37
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.37
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.37
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.37
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.36
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.36
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.36
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.35
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.35
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.34
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.34
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.33
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.33
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.32
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.31
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.31
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.31
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.31
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.31
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.29
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.28
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.27
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.26
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.26
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.26
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.24
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.23
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.22
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.22
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.22
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.21
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.21
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.2
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.19
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.19
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.18
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.15
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.15
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.15
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.12
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.11
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.11
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.1
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.1
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.1
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.09
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.09
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.08
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.07
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.05
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.05
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.05
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.04
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.02
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.01
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.0
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.0
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.0
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.99
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.99
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.98
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.98
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.98
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.96
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.96
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.96
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.96
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.95
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.94
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.93
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.92
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.91
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.9
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.88
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.88
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.86
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.86
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.85
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.82
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.81
d1cvua1	511	Prostaglandin H2 synthase {Mouse (Mus musculus) [T	96.81
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.8
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.79
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.79
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.78
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.78
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.75
d1q4ga1	511	Prostaglandin H2 synthase {Sheep (Ovis aries) [Tax	96.75
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.74
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.74
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.74
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.73
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.72
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.7
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.68
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.66
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.65
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.65
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.65
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.64
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.62
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.59
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.59
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.55
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.54
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.52
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.51
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.5
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.49
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.49
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.46
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.45
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.44
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.42
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.42
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.41
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.41
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.4
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.37
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.37
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.36
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.35
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.32
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.28
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.25
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.25
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.25
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.24
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.22
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.21
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.21
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.21
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.21
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.2
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.18
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.17
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.15
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.15
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.15
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.14
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.14
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.12
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.1
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.1
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.09
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.09
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.09
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.07
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.06
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.02
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	95.99
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.97
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.94
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	95.94
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	95.93
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.92
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.92
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	95.91
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	95.87
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.86
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	95.84
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.83
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.83
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.81
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	95.81
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	95.8
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.79
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.78
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	95.77
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.77
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.76
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.74
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.72
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	95.7
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	95.69
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	95.69
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	95.68
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.68
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	95.68
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	95.68
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.66
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	95.65
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	95.64
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	95.64
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	95.64
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	95.63
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.63
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.63
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	95.62
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	95.62
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	95.61
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.6
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.6
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.59
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.58
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.57
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.57
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	95.55
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.53
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	95.52
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	95.52
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.51
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.51
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.47
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	95.45
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.45
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	95.43
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.41
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	95.41
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.4
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	95.4
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.38
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.38
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	95.37
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	95.37
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.37
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.37
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.36
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.35
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	95.35
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	95.34
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.34
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.33
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.33
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	95.32
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	95.31
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.31
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	95.3
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	95.28
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	95.28
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	95.26
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.26
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	95.25
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.24
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	95.23
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	95.23
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	95.22
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.22
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	95.21
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.21
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	95.2
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.17
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.16
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	95.13
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.13
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	95.12
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	95.12
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	95.11
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	95.11
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	95.11
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	95.1
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	95.1
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	95.1
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	95.09
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	95.06
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	95.05
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	95.05
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	95.04
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	95.04
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.99
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	94.97
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	94.97
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	94.96
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	94.95
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.94
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.91
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.9
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	94.89
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	94.87
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	94.87
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.87
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	94.84
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	94.83
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	94.82
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	94.8
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	94.79
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.78
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	94.78
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	94.77
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	94.75
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	94.74
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	94.71
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	94.7
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	94.67
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	94.65
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	94.64
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	94.63

>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-35  Score=339.51  Aligned_cols=198  Identities=18%  Similarity=0.216  Sum_probs=165.7

Q ss_pred             ceeeeccchhhhhheeeEEEEeecccccccccccccccccCcccccccCCCCchhhccccCcCccCCCCccccHHHHHhh
Q psy11143        485 RTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKL  564 (940)
Q Consensus       485 ~~~~~Aa~~fg~t~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (940)
                      .+++.|+.+++|+++.-.  +...     ..+..+.+.||+|..+.+ ++++++++||..|+|+......++        
T Consensus       305 ~s~efaa~r~~Hslip~~--~~~~-----~~~~~l~~~~~~~~~~~~-~gl~~~~~~~~~q~a~~~~~~~n~--------  368 (511)
T d1cvua1         305 IASEFNTLYHWHPLLPDT--FNIE-----DQEYSFKQFLYNNSILLE-HGLTQFVESFTRQIAGRVAGGRNV--------  368 (511)
T ss_dssp             CBHHHHHHTCCGGGSCSS--EEET-----TEEECHHHHTTCHHHHHH-HHHHHHHHHHHHSBCBCSTTSSCB--------
T ss_pred             hHHHHHHHHhhhhcCccc--cccC-----CccccHHHHhcCcchhhh-cCHHHHHHHHHHHHhhhcccccCC--------
Confidence            455557899999985322  2211     234677888999965554 569999999999998765322222        


Q ss_pred             hccccchhhhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChhHHHH
Q psy11143        565 FTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIEL  644 (940)
Q Consensus       565 ~~~~~~~~~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (940)
                          .....||+++|||||||||||+||+||++|||+++++||||++   |++++++|+++|++||              
T Consensus       369 ----~~~~~dl~al~IqRgRd~Glp~yN~~R~~~gL~~~~sFedl~~---d~~~~~~L~~lY~~vd--------------  427 (511)
T d1cvua1         369 ----PIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG---EKEMAAELKALYSDID--------------  427 (511)
T ss_dssp             ----CGGGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS---SSHHHHHHHHHHSSGG--------------
T ss_pred             ----CchhhhHHHhhhHhHhhcCCCcHHHHHHHcCCCCCCCHHHhCC---CHHHHHHHHHHhCChh--------------
Confidence                2345799999999999999999999999999999999999985   8999999999999887              


Q ss_pred             HHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCCcccc
Q psy11143        645 IANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVG  724 (940)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  724 (940)
                                                                                               +      
T Consensus       428 -------------------------------------------------------------------------d------  428 (511)
T d1cvua1         428 -------------------------------------------------------------------------V------  428 (511)
T ss_dssp             -------------------------------------------------------------------------G------
T ss_pred             -------------------------------------------------------------------------H------
Confidence                                                                                     4      


Q ss_pred             cccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCccccceeccc
Q psy11143        725 AILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQ  804 (940)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  804 (940)
                                                                                          ||||||+++|++
T Consensus       429 --------------------------------------------------------------------VDL~vG~laE~~  440 (511)
T d1cvua1         429 --------------------------------------------------------------------MELYPALLVEKP  440 (511)
T ss_dssp             --------------------------------------------------------------------CCHHHHHHHSCC
T ss_pred             --------------------------------------------------------------------hhhhhchhccCc
Confidence                                                                                459999999999


Q ss_pred             cCCCCCCcchhhhhhhhhhhcccCCcccccC---CCCCC-hhHHhHhhhceeeeeeecCCCceeeE
Q psy11143        805 VDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN---PSTFK-PAQLTQIKQASLARVICDSGDRLTEV  866 (940)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (940)
                      +||+.+||||.||+++||.|+|.|||||||+   +++|+ +.||++|++++|++|||+|.+....+
T Consensus       441 ~~g~~~GpT~~~ii~~qf~r~r~gDRf~~e~~~~p~~ft~~~ql~~i~~~tLa~iic~N~~~~p~~  506 (511)
T d1cvua1         441 RPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFT  506 (511)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHTSGGGSTTTSSGGGGTSHHHHHHHHTCCHHHHHHHHSTTCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCccccCCCCCCCcCcHHHHHHHHHCcHHHHHHhCCCCCCCc
Confidence            9999999999999999999999999999986   78898 56999999999999999999965444

>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=99.98  E-value=5.3e-35  Score=336.74  Aligned_cols=196  Identities=21%  Similarity=0.278  Sum_probs=165.1

Q ss_pred             eeccchhhhhheeeEEEEeecccccccccccccccccCcccccccCCCCchhhccccCcCccCCCCccccHHHHHhhhcc
Q psy11143        488 VRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTT  567 (940)
Q Consensus       488 ~~Aa~~fg~t~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (940)
                      ..|+.+++|+++.-.  +...     ..+..+.+.+|+|..+.+ .|++.+++||.+|++++.....++.          
T Consensus       307 eFaa~y~~Hslip~~--~~~~-----~~~~~~~~~~~~~~~~~~-~g~~~l~~gl~~q~a~~~~~~~~~~----------  368 (511)
T d1q4ga1         307 EFNQLYHWHPLMPDS--FRVG-----PQDYSYEQFLFNTSMLVD-YGVEALVDAFSRQPAGRIGGGRNID----------  368 (511)
T ss_dssp             HHHHHTCCGGGSCSS--EEET-----TEEECHHHHTTCSSHHHH-HCHHHHHHHHHHSBCBCSSSSSCBC----------
T ss_pred             HHHHHhhccccCchh--hhcC-----CccccHHHhhcCchhhhh-cchHHHHHHHhhCccccccccccCC----------
Confidence            347889999985322  2111     234567777888866655 5699999999999998874433332          


Q ss_pred             ccchhhhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChhHHHHHHh
Q psy11143        568 FHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQIELIAN  647 (940)
Q Consensus       568 ~~~~~~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (940)
                        ...+||+++|||||||||||+||+||++|||+++++|+||++   |++++++|+++|++|+                 
T Consensus       369 --~~~~dl~~~~IqRgRd~Glp~YN~~R~~~gL~~~~sFedl~~---d~~~~~~L~~lYg~vd-----------------  426 (511)
T d1q4ga1         369 --HHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG---EKEMAAELEELYGDID-----------------  426 (511)
T ss_dssp             --TTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS---SSHHHHHHHHHHSSGG-----------------
T ss_pred             --hhHHHHHHHHHHHHHhcCCCcHHHHHHHcCCCcCCCHHHhCC---CHHHHHHHHHHhCCHh-----------------
Confidence              345899999999999999999999999999999999999985   7899999999999887                 


Q ss_pred             cccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCCccccccc
Q psy11143        648 LSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAIL  727 (940)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  727 (940)
                                                                                            +         
T Consensus       427 ----------------------------------------------------------------------d---------  427 (511)
T d1q4ga1         427 ----------------------------------------------------------------------A---------  427 (511)
T ss_dssp             ----------------------------------------------------------------------G---------
T ss_pred             ----------------------------------------------------------------------H---------
Confidence                                                                                  4         


Q ss_pred             ccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCccccceeccccCC
Q psy11143        728 EDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDG  807 (940)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  807 (940)
                                                                                       ||||||+++|+++||
T Consensus       428 -----------------------------------------------------------------VDL~vG~laE~~~~G  442 (511)
T d1q4ga1         428 -----------------------------------------------------------------LEFYPGLLLEKCHPN  442 (511)
T ss_dssp             -----------------------------------------------------------------CCHHHHHHHSCBCTT
T ss_pred             -----------------------------------------------------------------hhHhhchhccccCCC
Confidence                                                                             459999999999999


Q ss_pred             CCCCcchhhhhhhhhhhcccCCcccccC---CCC-CChhHHhHhhhceeeeeeecCCCceeeEE
Q psy11143        808 GRVGPTMRCLLIDQFKRIRDGDRFWYEN---PST-FKPAQLTQIKQASLARVICDSGDRLTEVR  867 (940)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (940)
                      +.+||||.||+++||.|++.||||||++   ++. |++.||++|++++|++|||+|.+.+..++
T Consensus       443 ~~~GpT~~~ii~~qf~r~~~gDRf~~e~~~~~~~f~~~~ql~~i~~~tL~~iic~N~~~~~~~~  506 (511)
T d1q4ga1         443 SIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVS  506 (511)
T ss_dssp             CSSBHHHHHHHHHHHHHHHHTSGGGSTTTCSGGGGTSHHHHHHHHTCCHHHHHHTTSSSCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCccccCcCCCCCCCCHHHHHHHHHCCHHHHHHhCCCCCCccc
Confidence            9999999999999999999999999997   455 48999999999999999999999776664

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=2.5e-14  Score=125.59  Aligned_cols=87  Identities=30%  Similarity=0.531  Sum_probs=81.1

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      |.|+..+.+..+..|+++.|.|.+.|.|.|.|+|+|+|..+..+.++.+ .+++|.|.++..+|+|.|+|.|.|..|...
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   80 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVY   80 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee-eeeeEEEEeecccCCEEEEEEEEeCCCEEE
Confidence            7788889999999999999999999999999999999999988877766 467899999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy11143        403 AEGYLTVT  410 (940)
Q Consensus       403 ~s~~L~V~  410 (940)
                      .++.|.|+
T Consensus        81 ~~~~l~V~   88 (89)
T d1cs6a4          81 ASAELTVQ   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999986

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.49  E-value=4.1e-14  Score=126.10  Aligned_cols=92  Identities=25%  Similarity=0.440  Sum_probs=82.4

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeee---ceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      .|.|+..|.++.+.+|+++.|.|.+.|.|.|.|+|++++..+..+.++.+...   .+|.|.++..+|+|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            38889999999999999999999999999999999999999987776665433   369999999999999999999999


Q ss_pred             eeEEEEEEEEEecCC
Q psy11143        399 GEDVAEGYLTVTGEN  413 (940)
Q Consensus       399 G~~~~s~~L~V~~~~  413 (940)
                      |..+.++.|.|...+
T Consensus        81 G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          81 GTKEEIVFLNVTRHS   95 (97)
T ss_dssp             EEEEEEECCEEECSC
T ss_pred             CEEEEEEEEEEeecC
Confidence            999999999998654

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.8e-14  Score=124.91  Aligned_cols=92  Identities=26%  Similarity=0.369  Sum_probs=82.7

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeee---ceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      |.|+..|.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+...   .+|.|.++..+|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            5667778889999999999999999999999999999999988877776543   3699999999999999999999999


Q ss_pred             eEEEEEEEEEecCCC
Q psy11143        400 EDVAEGYLTVTGENS  414 (940)
Q Consensus       400 ~~~~s~~L~V~~~~~  414 (940)
                      ..+.++.|.|.+.|.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          81 SRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEECCEEEEEECSCS
T ss_pred             EEEEEEEEEEEecCC
Confidence            999999999998765

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.48  E-value=1.1e-13  Score=124.38  Aligned_cols=91  Identities=31%  Similarity=0.505  Sum_probs=82.6

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.|...|.++.+.+|+++.|.|.+.|.|.|.|.|+|+|..+..+.++.+..    ..+|.|.++..+|+|.|+|.|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            46888888999999999999999999999999999999999998887777643    34799999999999999999999


Q ss_pred             CCeeEEEEEEEEEec
Q psy11143        397 LLGEDVAEGYLTVTG  411 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~  411 (940)
                      ..|..+.++.|.|+.
T Consensus        87 ~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          87 SLGEATCTAELLVET  101 (102)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999999874

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.48  E-value=1.3e-13  Score=123.04  Aligned_cols=91  Identities=20%  Similarity=0.299  Sum_probs=81.1

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.|...+.+..+.+|+.++|.|.+.|.|.|.++|+|++..+..+.+.....    ..+|.|.++..+|+|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            46889988999999999999999999999999999999999998776554422    22799999999999999999999


Q ss_pred             CCeeEEEEEEEEEec
Q psy11143        397 LLGEDVAEGYLTVTG  411 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~  411 (940)
                      ..|..+.++.|.|+.
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999999975

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.48  E-value=4.7e-14  Score=125.70  Aligned_cols=94  Identities=27%  Similarity=0.498  Sum_probs=81.8

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe--eceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--DGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~--~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .|.|+..|.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..|..+.++.+..  +...|.|.+++.+|+|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            3789999999999999999999999999999999999999998766665542  33458999999999999999999999


Q ss_pred             CceEEEEEEEEecccC
Q psy11143        123 GSAESVAMIRINGHRA  138 (940)
Q Consensus       123 g~~~~~~~L~V~~~~~  138 (940)
                      |.....+.|.|...+.
T Consensus        81 G~~~~~~~l~V~~~~~   96 (97)
T d1koaa1          81 GTKEEIVFLNVTRHSE   96 (97)
T ss_dssp             EEEEEEECCEEECSCC
T ss_pred             CEEEEEEEEEEeecCC
Confidence            9988888888876443

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.46  E-value=1.7e-13  Score=120.14  Aligned_cols=87  Identities=29%  Similarity=0.586  Sum_probs=78.0

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      |.|+..|.+..+.+|+++.|.|.+.|.|.|+|+|+|||.++....+..+.  +..|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   79 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--GGELRFSKLVLEDSGMYQCVAENKHGTV   79 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE--TTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee--eeeEEEEeecccCCEEEEEEEEeCCCEE
Confidence            67889999999999999999999999999999999999999877665543  4467999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy11143        126 ESVAMIRIN  134 (940)
Q Consensus       126 ~~~~~L~V~  134 (940)
                      ...+.|.|.
T Consensus        80 ~~~~~l~V~   88 (89)
T d1cs6a4          80 YASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888888874

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.46  E-value=9.8e-14  Score=122.57  Aligned_cols=89  Identities=22%  Similarity=0.303  Sum_probs=80.2

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      +|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+..+.++.+..   ..+|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            6888888888999999999999999999999999999999888777666554   3379999999999999999999999


Q ss_pred             eeEEEEEEEEEe
Q psy11143        399 GEDVAEGYLTVT  410 (940)
Q Consensus       399 G~~~~s~~L~V~  410 (940)
                      |..++++.|.|+
T Consensus        82 G~~~~~~~l~V~   93 (93)
T d1wiua_          82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999999999885

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-13  Score=122.93  Aligned_cols=93  Identities=20%  Similarity=0.361  Sum_probs=82.3

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      |.|...|.+..+.+|+.+.|.|.+.|.|.++|.|+|+|..|....++++.  .+...|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            56777889999999999999999999999999999999999887777766  3445689999999999999999999999


Q ss_pred             ceEEEEEEEEecccC
Q psy11143        124 SAESVAMIRINGHRA  138 (940)
Q Consensus       124 ~~~~~~~L~V~~~~~  138 (940)
                      ..+..+.|.|...+.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          81 SRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEECCEEEEEECSCS
T ss_pred             EEEEEEEEEEEecCC
Confidence            988888899887543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.44  E-value=3.1e-13  Score=121.47  Aligned_cols=90  Identities=30%  Similarity=0.555  Sum_probs=80.8

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe--e-ceEEEEcccccCCCeEEEEEEEeC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--D-GFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~--~-gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      +|.|...|.++.+.+|+.+.|.|.+.|.|.|.|.|+|||..|..+.+..+..  . ...|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   87 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS   87 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEEC
Confidence            5788889999999999999999999999999999999999998887777652  2 346899999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy11143        122 EGSAESVAMIRIN  134 (940)
Q Consensus       122 ~g~~~~~~~L~V~  134 (940)
                      .|....++.|.|.
T Consensus        88 ~G~~~~~~~L~V~  100 (102)
T d1fhga_          88 LGEATCTAELLVE  100 (102)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            9999888888875

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.44  E-value=3.5e-13  Score=120.19  Aligned_cols=91  Identities=25%  Similarity=0.441  Sum_probs=80.1

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eec-eEEEEcccccCCCeEEEEEEEeC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDG-FVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~g-s~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      +|.|...+.+..+.+|+.++|.|.+.|.|.|.|+|+||+.+|..+.+....  .++ ..|.|.++..+|+|.|+|.|.|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   83 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI   83 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEEC
Confidence            578889999999999999999999999999999999999999877665543  222 36899999999999999999999


Q ss_pred             CCceEEEEEEEEec
Q psy11143        122 EGSAESVAMIRING  135 (940)
Q Consensus       122 ~g~~~~~~~L~V~~  135 (940)
                      .|.....+.|.|..
T Consensus        84 ~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          84 AGETSSHAFLLVQA   97 (98)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEEEE
Confidence            99998888888864

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.42  E-value=3.7e-13  Score=117.89  Aligned_cols=86  Identities=29%  Similarity=0.557  Sum_probs=74.7

Q ss_pred             CCeEEEcCCc-eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        322 APRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       322 ~P~i~~~p~~-~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      +|.|...|.. +.+.+|+++.|.|.+.|.|.|.|+|+|++..+..+ ++.+ .++.|.|.++..+|+|.|+|.|.|..|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV-TDSGLVIKGVKNGDKGYYGCRATNEHGD   79 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE-ETTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE-eeeeEEECCCChhhCEEEEEEEEECCCE
Confidence            5777777654 57889999999999999999999999999998644 4544 4557999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy11143        401 DVAEGYLTV  409 (940)
Q Consensus       401 ~~~s~~L~V  409 (940)
                      ....+.|.|
T Consensus        80 ~~~~~~l~V   88 (89)
T d1biha4          80 KYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999998887

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.40  E-value=2.8e-13  Score=119.56  Aligned_cols=89  Identities=16%  Similarity=0.275  Sum_probs=78.9

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe--eceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--DGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~--~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      +|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+..+.+..+..  ....|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            6788888899999999999999999999999999999999988777666553  33468999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy11143        123 GSAESVAMIRI  133 (940)
Q Consensus       123 g~~~~~~~L~V  133 (940)
                      |..+..+.|.|
T Consensus        82 G~~~~~~~l~V   92 (93)
T d1wiua_          82 GEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99888887776

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.39  E-value=3.2e-13  Score=118.75  Aligned_cols=87  Identities=30%  Similarity=0.553  Sum_probs=73.7

Q ss_pred             cCCeEEEc-CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        321 RAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       321 ~~P~i~~~-p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      ++|.+... |.++.+.+|++++|.|.+.|.|.|.|.|+|++......   ....+++|.|.++..+|+|.|+|.|.|..|
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQNVDFEDEGTYECEAENIKG   79 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC---CSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE---eeeeeeEEEeCCCCccCCEEEEEEEEECCC
Confidence            46777654 67889999999999999999999999999977544321   223466899999999999999999999999


Q ss_pred             eEEEEEEEEEe
Q psy11143        400 EDVAEGYLTVT  410 (940)
Q Consensus       400 ~~~~s~~L~V~  410 (940)
                      ..+.++.|.|.
T Consensus        80 ~~~~~~~l~V~   90 (91)
T d1cs6a3          80 RDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99999999885

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.37  E-value=1.3e-13  Score=121.22  Aligned_cols=86  Identities=26%  Similarity=0.528  Sum_probs=76.0

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      |+..|.++.+.+|+++.|.|.+.|.|.|.|.|+++|..+..+.++.+..   .++|.|.++..+|+|.|+|.|.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            4456778899999999999999999999999999999888776655543   4589999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy11143        402 VAEGYLTVT  410 (940)
Q Consensus       402 ~~s~~L~V~  410 (940)
                      +.++.|.|+
T Consensus        82 ~~~~~l~V~   90 (91)
T d1tnna_          82 EAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECC
T ss_pred             EEEEEEEEE
Confidence            999999886

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.37  E-value=7.5e-13  Score=115.87  Aligned_cols=86  Identities=29%  Similarity=0.594  Sum_probs=72.2

Q ss_pred             CCeEEeCCCc-EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         45 PPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        45 pP~~~~~p~~-~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +|.|...|.. ..+.+|+.+.|.|.+.|.|.|+|+|+|+|..+... +..+.  ...|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--DSGLVIKGVKNGDKGYYGCRATNEHG   78 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--TTEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe--eeeEEECCCChhhCEEEEEEEEECCC
Confidence            4677777654 67899999999999999999999999999999643 34333  33479999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy11143        124 SAESVAMIRI  133 (940)
Q Consensus       124 ~~~~~~~L~V  133 (940)
                      .....+.|.|
T Consensus        79 ~~~~~~~l~V   88 (89)
T d1biha4          79 DKYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8888877776

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=9.1e-13  Score=117.83  Aligned_cols=91  Identities=30%  Similarity=0.473  Sum_probs=74.8

Q ss_pred             cCCeEEEcCCc--eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC----cEEE-eeeceEEEecCCCCCCeEEEEE
Q psy11143        321 RAPRLVVKPFD--MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR----NHKI-HRTGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       321 ~~P~i~~~p~~--~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~----~~~i-~~~~sL~I~~v~~~D~G~YtC~  393 (940)
                      .||.|...+..  ..+..|++++|.|.+.|.|.|.|.|+++|..+....    .... ...++|.|.++..+|+|.|+|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            47777765554  456789999999999999999999999999875432    2222 2245899999999999999999


Q ss_pred             EEeCCeeEEEEEEEEEec
Q psy11143        394 ASNLLGEDVAEGYLTVTG  411 (940)
Q Consensus       394 A~N~~G~~~~s~~L~V~~  411 (940)
                      |.|..|..+.++.|.|..
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          82 AENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999999999999874

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.34  E-value=2.5e-13  Score=119.47  Aligned_cols=87  Identities=29%  Similarity=0.563  Sum_probs=76.0

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      |+..|.++.+.+|+++.|.|.+.|.|.|.|.|+++|..+....+.++.  .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            456788899999999999999999999999999999999877766555  445668999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy11143        126 ESVAMIRIN  134 (940)
Q Consensus       126 ~~~~~L~V~  134 (940)
                      ...+.|.|.
T Consensus        82 ~~~~~l~V~   90 (91)
T d1tnna_          82 EAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECC
T ss_pred             EEEEEEEEE
Confidence            888877764

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.3e-12  Score=115.14  Aligned_cols=89  Identities=20%  Similarity=0.419  Sum_probs=74.3

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE-eeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~-~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      +.|...|.+.++.+|+.+.|.|.+.|.|.|.|+|+|++..+......++. ..+..|.|.+++.+|+|.|+|.|.|..+.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence            56788899999999999999999999999999999999988765544333 33345799999999999999999998777


Q ss_pred             eEEEEEEEEe
Q psy11143        125 AESVAMIRIN  134 (940)
Q Consensus       125 ~~~~~~L~V~  134 (940)
                      ......+.|.
T Consensus        82 ~~~~~~i~Vi   91 (92)
T d1epfa2          82 EINFKDIQVI   91 (92)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            6666666664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.6e-12  Score=109.79  Aligned_cols=82  Identities=23%  Similarity=0.463  Sum_probs=69.1

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      |.|...|.+..+.+|+++.|.|.+.|.|.| +|+|+|+|..+....      .+.+.|.....+|+|.|+|.|.|..|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------PSPSVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------ESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC------CcceEEecCCccccEEEEEEEEcCCCcE
Confidence            788899999999999999999999999998 999999999886442      2345666677789999999999999965


Q ss_pred             E-EEEEEEEe
Q psy11143        402 V-AEGYLTVT  410 (940)
Q Consensus       402 ~-~s~~L~V~  410 (940)
                      . ..+.|.|+
T Consensus        76 ~S~~~~v~Vk   85 (85)
T d1rhfa2          76 SSRTATVHLQ   85 (85)
T ss_dssp             ECCCEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            4 46777774

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.32  E-value=1.6e-12  Score=114.24  Aligned_cols=86  Identities=28%  Similarity=0.476  Sum_probs=71.0

Q ss_pred             CCeEEeC-CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         45 PPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        45 pP~~~~~-p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +|.+... |..+.+.+|+.++|.|.+.|.|.|.|.|+|++......    ....+..|.|.+++.+|+|.|+|.|.|..|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIKG   79 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----CSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE----eeeeeeEEEeCCCCccCCEEEEEEEEECCC
Confidence            5666554 78899999999999999999999999999977654321    223455689999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy11143        124 SAESVAMIRIN  134 (940)
Q Consensus       124 ~~~~~~~L~V~  134 (940)
                      .....+.|.|.
T Consensus        80 ~~~~~~~l~V~   90 (91)
T d1cs6a3          80 RDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            88888877774

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=3e-12  Score=114.37  Aligned_cols=91  Identities=24%  Similarity=0.578  Sum_probs=73.9

Q ss_pred             CCeEEeCCCcE--EEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC----eEEEeeceEEEEcccccCCCeEEEEEE
Q psy11143         45 PPIFIQRPVST--TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVRESDAGVYNCVA  118 (940)
Q Consensus        45 pP~~~~~p~~~--~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~----~~~~~~gs~L~I~~v~~~DsG~YtC~a  118 (940)
                      ||.+...+...  ++.+|+++.|.|.+.|.|.|.|+|+++|..+.....    .........|.|.+++.+|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            67777666554  557899999999999999999999999999865432    222344567899999999999999999


Q ss_pred             EeCCCceEEEEEEEEec
Q psy11143        119 QNSEGSAESVAMIRING  135 (940)
Q Consensus       119 ~n~~g~~~~~~~L~V~~  135 (940)
                      .|..|.....+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999988888888753

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3.2e-12  Score=111.48  Aligned_cols=81  Identities=25%  Similarity=0.466  Sum_probs=70.2

Q ss_pred             cCCceeecCCCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        328 KPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      .|....+.+|+++.|.|.+. +.|.|.|.|+|++..+.....  ...+++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~   85 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT   85 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc--EeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEE
Confidence            45667899999999999997 678899999999887765532  345679999999999999999999999999999999


Q ss_pred             EEEe
Q psy11143        407 LTVT  410 (940)
Q Consensus       407 L~V~  410 (940)
                      |.|+
T Consensus        86 l~V~   89 (89)
T d1gl4b_          86 LHVQ   89 (89)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9885

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.5e-12  Score=110.95  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=68.6

Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      ..+.+|+++.|.|.+.|.|.|.++|++++..+..+........++|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            4567899999999999999999999998877655544444456689999999999999999999999999999999885

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3e-12  Score=112.25  Aligned_cols=84  Identities=30%  Similarity=0.487  Sum_probs=70.2

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE----eeceEEEEcccccCCCeEEEEEEEeCCCceE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAE  126 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~----~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~  126 (940)
                      .|.++++.+|+++.|.|.+.|.|.|.|.|+|++..+.......+.    .....|.|.+++.+|+|.|+|.|.|..|...
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            467889999999999999999999999999999998766554444    1224589999999999999999999999765


Q ss_pred             E-EEEEEEe
Q psy11143        127 S-VAMIRIN  134 (940)
Q Consensus       127 ~-~~~L~V~  134 (940)
                      + .+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence            4 6777775

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.5e-12  Score=112.26  Aligned_cols=88  Identities=18%  Similarity=0.301  Sum_probs=76.1

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      +.|...|.+..+.+|+++.|.|.+.|.|.|.++|+|++..+....  ++....+++|.|.++..+|+|.|+|.|.|..|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence            567788899999999999999999999999999999999886543  455555678999999999999999999999887


Q ss_pred             EEEEEEEEEe
Q psy11143        401 DVAEGYLTVT  410 (940)
Q Consensus       401 ~~~s~~L~V~  410 (940)
                      ......+.|.
T Consensus        82 ~~~~~~i~Vi   91 (92)
T d1epfa2          82 EINFKDIQVI   91 (92)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7777777664

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.29  E-value=1.9e-12  Score=115.06  Aligned_cols=88  Identities=31%  Similarity=0.603  Sum_probs=74.1

Q ss_pred             CCeEEeCCCcEEEecC---CeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE-eeceEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTYSTG---STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V~eG---esv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~-~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +|.|..+|.++.+.+|   ++++|.|.+.|.|.|.|+|++||..+.......+. ..+.+|.|..+..+|+|.|+|.|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N   83 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN   83 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEE
Confidence            5888999999988876   78999999999999999999999998765544333 5667889999999999999999999


Q ss_pred             CCCceEE-EEEEE
Q psy11143        121 SEGSAES-VAMIR  132 (940)
Q Consensus       121 ~~g~~~~-~~~L~  132 (940)
                      ..|...+ .+.|+
T Consensus        84 ~~G~~~S~~a~L~   96 (97)
T d1cs6a1          84 ARGTVVSREASLR   96 (97)
T ss_dssp             TTEEEECCCEEEE
T ss_pred             CCCEEEEEEEEEe
Confidence            9997654 55554

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.8e-12  Score=108.34  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=67.2

Q ss_pred             ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      +..+.+|++++|.|.+.|.|.|.|.|++++..+.       ....+|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~-------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE-------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccce-------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEE
Confidence            4578899999999999999999999999876542       345679999999999999999999999999999999998


Q ss_pred             cCC
Q psy11143        411 GEN  413 (940)
Q Consensus       411 ~~~  413 (940)
                      +.+
T Consensus        81 ~~~   83 (84)
T d2nxyb2          81 AFQ   83 (84)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            754

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-11  Score=111.47  Aligned_cols=92  Identities=23%  Similarity=0.318  Sum_probs=75.4

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcC---CCeEEEEeCCeeecc---CCcEEEe---------eeceEEEecCCCC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEP---LPRISWSKDEAEFVE---DRNHKIH---------RTGSLRLYNIGPQ  385 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P---~p~i~W~k~g~~i~~---~~~~~i~---------~~~sL~I~~v~~~  385 (940)
                      +.|.|+..|.++.+.+|++++|.|.+.|.|   .|.|.|+|++.....   ..+....         ..++|.|.+++.+
T Consensus         3 p~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (110)
T d2avga1           3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (110)
T ss_dssp             TTCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTT
T ss_pred             CCCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHH
Confidence            346788889999999999999999999999   579999998754321   1222222         1347999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        386 DSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       386 D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      |+|.|+|.|+|..|..++++.|.|+.+
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          83 FTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             HCcEEEEEEEECCCeEEEEEEEEEEec
Confidence            999999999999999999999999864

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-11  Score=110.17  Aligned_cols=89  Identities=22%  Similarity=0.374  Sum_probs=73.6

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeee----c--cCCcEEEeee---ceEEEecCC-CCCCeEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEF----V--EDRNHKIHRT---GSLRLYNIG-PQDSGLY  390 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i----~--~~~~~~i~~~---~sL~I~~v~-~~D~G~Y  390 (940)
                      ||.|...+....+.+|+.++|.|.+.|.|.| .+.|+|++...    .  ...++.+...   .+|.|.++. .+|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            7888888888999999999999999999988 79999976322    1  2234544433   379999998 5799999


Q ss_pred             EEEEEeCCeeEEEEEEEEEe
Q psy11143        391 RCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       391 tC~A~N~~G~~~~s~~L~V~  410 (940)
                      +|.|.|..|..+..+.|.|+
T Consensus        82 ~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEC
Confidence            99999999999999999885

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.3e-12  Score=111.98  Aligned_cols=83  Identities=28%  Similarity=0.459  Sum_probs=70.7

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee-----eceEEEecCCCCCCeEEEEEEEeCCeeE-E
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNLLGED-V  402 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A~N~~G~~-~  402 (940)
                      |.++.+.+|+.++|.|.+.|.|.|.+.|+|++..+....+..+..     .+.|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            567889999999999999999999999999999987665544332     2479999999999999999999999975 4


Q ss_pred             EEEEEEEec
Q psy11143        403 AEGYLTVTG  411 (940)
Q Consensus       403 ~s~~L~V~~  411 (940)
                      ..+.|.|++
T Consensus        83 ~~~~l~V~G   91 (91)
T d1rhfa1          83 QPVWLTVEG   91 (91)
T ss_dssp             CCEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            578888864

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.8e-12  Score=107.65  Aligned_cols=81  Identities=22%  Similarity=0.469  Sum_probs=66.9

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      |.|..+|.+..+.+|+++.|.|.+.|.|.| +|+|+|||..+....      .+. +.|.....+|+|.|+|.|.|..|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------~~~-~~l~~~~~~d~G~Y~C~A~N~~G~   74 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------PSP-SVLNVTGVTQSTMFSCEAHNLKGL   74 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------ESS-EEEEECCCSSCEEEEEEEEETTEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC------Ccc-eEEecCCccccEEEEEEEEcCCCc
Confidence            788999999999999999999999999987 999999999986432      112 356666778999999999999997


Q ss_pred             eEE-EEEEEE
Q psy11143        125 AES-VAMIRI  133 (940)
Q Consensus       125 ~~~-~~~L~V  133 (940)
                      ..+ .+.|.|
T Consensus        75 ~~S~~~~v~V   84 (85)
T d1rhfa2          75 ASSRTATVHL   84 (85)
T ss_dssp             EECCCEEEEE
T ss_pred             EEEEEEEEEE
Confidence            554 566665

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.27  E-value=3.5e-12  Score=113.35  Aligned_cols=79  Identities=29%  Similarity=0.549  Sum_probs=68.1

Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcE---EE-eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL  407 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~---~i-~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L  407 (940)
                      ..+..|+++.|.|.+.|+|.|.|.|+|+|.++..+.+.   .. ...++|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            46789999999999999999999999999988654322   22 234689999999999999999999999999999999


Q ss_pred             EEe
Q psy11143        408 TVT  410 (940)
Q Consensus       408 ~V~  410 (940)
                      .|.
T Consensus        95 ~Vl   97 (97)
T d3dara1          95 DVV   97 (97)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            873

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.27  E-value=9.2e-12  Score=110.57  Aligned_cols=82  Identities=18%  Similarity=0.417  Sum_probs=69.3

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE----eeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~----~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      +.++.+.+|+++.|.|.+.|.|.+.|.|+|+|..+......++.    ..+..|.|.+++.+|+|.|+|.|.|..|...+
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            57889999999999999999999999999999998765544333    34457899999999999999999999998654


Q ss_pred             -EEEEEE
Q psy11143        128 -VAMIRI  133 (940)
Q Consensus       128 -~~~L~V  133 (940)
                       .+.|+|
T Consensus        90 ~s~~L~V   96 (97)
T d1biha3          90 HSLKLTV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence             666766

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.1e-11  Score=108.65  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             CeEEEcC-CceeecCCCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        323 PRLVVKP-FDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       323 P~i~~~p-~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      |.++..| ....+.+|+++.|.|.+. |.|.|.|+|++.+..+.  ........++|.|.+++.+|+|.|+|.|+|..|+
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~   80 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG--AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   80 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC--CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee--eeeccCceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence            4444444 446788999999999885 88999999999876552  2233344568999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy11143        401 DVAEGYLTV  409 (940)
Q Consensus       401 ~~~s~~L~V  409 (940)
                      .+.++.|.|
T Consensus        81 ~~~s~~l~V   89 (90)
T d1gsma1          81 FQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999999987

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.25  E-value=8.4e-12  Score=112.90  Aligned_cols=90  Identities=29%  Similarity=0.455  Sum_probs=70.1

Q ss_pred             cCCeEEEc-CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeec----cCC--cEE------E----eeeceEEEecCC
Q psy11143        321 RAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDR--NHK------I----HRTGSLRLYNIG  383 (940)
Q Consensus       321 ~~P~i~~~-p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~----~~~--~~~------i----~~~~sL~I~~v~  383 (940)
                      .+|.|... |.++++.+|++++|.|.+.|.|.|.|.|+|++....    ...  ...      .    ...+.|.|.++.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            56777654 788999999999999999999999999998764321    110  001      0    123579999999


Q ss_pred             CCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        384 PQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       384 ~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      .+|+|.|+|.|.|..|...+++.|.|.
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999999999999873

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.8e-13  Score=115.78  Aligned_cols=88  Identities=22%  Similarity=0.254  Sum_probs=74.7

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC-cEEEeeeceEEEecCCCCCCe-EEEEEEEeCCe
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKIHRTGSLRLYNIGPQDSG-LYRCTASNLLG  399 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~-~~~i~~~~sL~I~~v~~~D~G-~YtC~A~N~~G  399 (940)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.|+|++++..+.... .......+.|.|.+++.+|.| .|+|.|.|..|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence            5888888889999999999999999999999999999987765332 222234558999999999999 69999999999


Q ss_pred             eEEEEEEEEE
Q psy11143        400 EDVAEGYLTV  409 (940)
Q Consensus       400 ~~~~s~~L~V  409 (940)
                      ....++.|.|
T Consensus        82 ~~~~s~~l~V   91 (92)
T d2ifga1          82 RAEVSVQVNV   91 (92)
T ss_dssp             ECCEEECCCC
T ss_pred             EEEEEEEEEE
Confidence            9998888765

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-11  Score=110.79  Aligned_cols=92  Identities=20%  Similarity=0.184  Sum_probs=73.2

Q ss_pred             ccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee-------eceEEEecCCCCCCeEEEE
Q psy11143        320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-------TGSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       320 ~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~-------~~sL~I~~v~~~D~G~YtC  392 (940)
                      ..||+++....   ...+....|.|.+.|+|.|.+.|+|+|..+..+.+..+..       .+.|.|.+++.+|+|.|+|
T Consensus         3 ~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (105)
T d1wwca_           3 YYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL   79 (105)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             EcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEE
Confidence            46777654322   2345567788999999999999999999987766554321       3469999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEecCCC
Q psy11143        393 TASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       393 ~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .|+|..|..+.++.|.|..+|.
T Consensus        80 ~a~N~~G~~~~~~~v~V~~~P~  101 (105)
T d1wwca_          80 IAKNPLGTANQTINGHFLKEPF  101 (105)
T ss_dssp             EEEETTEEEEEEEEECCSCCCC
T ss_pred             EEEcCCCEEEEEEEEEEEeCCC
Confidence            9999999999999999887654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.25  E-value=9.1e-12  Score=110.59  Aligned_cols=81  Identities=23%  Similarity=0.559  Sum_probs=68.3

Q ss_pred             CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC---eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEE
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA  129 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~---~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~  129 (940)
                      ....|.+|+++.|.|.+.|+|.|+|+|+|||.++....+   .........|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   92 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   92 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEE
Confidence            346788999999999999999999999999999865432   23334456789999999999999999999999988888


Q ss_pred             EEEE
Q psy11143        130 MIRI  133 (940)
Q Consensus       130 ~L~V  133 (940)
                      .|.|
T Consensus        93 ~l~V   96 (97)
T d3dara1          93 HLDV   96 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.25  E-value=5.4e-12  Score=111.24  Aligned_cols=83  Identities=27%  Similarity=0.556  Sum_probs=70.3

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCC-eEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .|.|...|.++.+.+|+.+.|.|.+.|.|.| .|.|++||..+..... .....+...|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            5788889999999999999999999998866 7999999999875543 3344445568999999999999999999999


Q ss_pred             CceEE
Q psy11143        123 GSAES  127 (940)
Q Consensus       123 g~~~~  127 (940)
                      |...+
T Consensus        82 G~~~s   86 (94)
T d1biha1          82 GVASS   86 (94)
T ss_dssp             EEEEC
T ss_pred             CEEEE
Confidence            97544

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.2e-12  Score=111.58  Aligned_cols=74  Identities=24%  Similarity=0.284  Sum_probs=64.4

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~  408 (940)
                      |.+..+.+|+.+.|.|.+.|.|.|.|+|+|++..+....          .+.+++.+|+|.|+|.|.|..|+.+..+.|.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~----------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~   80 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVN   80 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT----------SCEECCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee----------eeeccccCCCCEEEEEEEcCCCEEEEEEEEE
Confidence            567789999999999999999999999999998765432          2456788999999999999999999999999


Q ss_pred             EecC
Q psy11143        409 VTGE  412 (940)
Q Consensus       409 V~~~  412 (940)
                      |..|
T Consensus        81 V~~P   84 (84)
T d2oz4a3          81 VLSP   84 (84)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9764

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-11  Score=112.49  Aligned_cols=90  Identities=19%  Similarity=0.246  Sum_probs=72.8

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcC---CCeEEEEeCCeeec---cCCcEEEee---------eceEEEecCCCCCCeE
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEP---LPRISWSKDEAEFV---EDRNHKIHR---------TGSLRLYNIGPQDSGL  389 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P---~p~i~W~k~g~~i~---~~~~~~i~~---------~~sL~I~~v~~~D~G~  389 (940)
                      |+..|.++.+.+|++++|.|.+.|.|   .|.|.|+|++....   ...++.+..         ..+|.|.++..+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            45567888999999999999999998   57999999875422   222332221         2369999999999999


Q ss_pred             EEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        390 YRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       390 YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      |+|.|.|..|..++++.|.|.+++.
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            9999999999999999999987654

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-11  Score=110.09  Aligned_cols=91  Identities=23%  Similarity=0.273  Sum_probs=74.6

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee--------eceEEEecCCCCCCeEEEE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~--------~~sL~I~~v~~~D~G~YtC  392 (940)
                      .||.+....   ....+..+.+.|.+.|+|.|.|.|+|+|..+..+.+..+..        .+.|.|.+++.+|+|.|+|
T Consensus         3 ~pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (103)
T d1wwbx_           3 FAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL   79 (103)
T ss_dssp             CCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             cCCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEE
Confidence            567664322   23467888999999999999999999999998766554422        2469999999999999999


Q ss_pred             EEEeCCeeEEEEEEEEEecCCC
Q psy11143        393 TASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       393 ~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .|+|.+|..+.++.|.|..+|.
T Consensus        80 ~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          80 IAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEECSSCEEEEEEEECCSCCCC
T ss_pred             EEeccCCEEEEEEEEEEEeCCC
Confidence            9999999999999999987764

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2e-11  Score=106.32  Aligned_cols=82  Identities=20%  Similarity=0.324  Sum_probs=67.9

Q ss_pred             EeCCCcEEEecCCeEEEEEEee-ccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      ...|....+.+|+++.|.|.+. +.|.+.|.|+|++..+.....   ...+..|+|.+++.+|+|.|+|.|.|..|....
T Consensus         6 ~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_           6 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             ECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE---EEETTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             EcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc---EeeceEEEEecCCcccCEEEEEEEEECCCEEEE
Confidence            3456778899999999999997 678899999999988765432   223445799999999999999999999998888


Q ss_pred             EEEEEE
Q psy11143        128 VAMIRI  133 (940)
Q Consensus       128 ~~~L~V  133 (940)
                      .+.|.|
T Consensus        83 ~~~l~V   88 (89)
T d1gl4b_          83 TATLHV   88 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            877776

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=7.2e-12  Score=111.22  Aligned_cols=88  Identities=22%  Similarity=0.409  Sum_probs=71.0

Q ss_pred             cCCeEEEcCCceeecCC---CeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeeeceEEEecCCCCCCeEEEEEEE
Q psy11143        321 RAPRLVVKPFDMRAPAG---SSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRTGSLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G---~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~~sL~I~~v~~~D~G~YtC~A~  395 (940)
                      .+|.|...|.+..+.+|   ++++|.|.+.|.|.|.++|+++|..+....  +........|.|..+..+|+|.|+|.|+
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            57888888988877665   789999999999999999999999886543  3333334467788899999999999999


Q ss_pred             eCCeeEEE-EEEEE
Q psy11143        396 NLLGEDVA-EGYLT  408 (940)
Q Consensus       396 N~~G~~~~-s~~L~  408 (940)
                      |..|...+ .+.|.
T Consensus        83 N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          83 NARGTVVSREASLR   96 (97)
T ss_dssp             ETTEEEECCCEEEE
T ss_pred             ECCCEEEEEEEEEe
Confidence            99998643 56664

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.22  E-value=1.4e-11  Score=109.31  Aligned_cols=82  Identities=26%  Similarity=0.359  Sum_probs=68.4

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe-----eeceEEEecCCCCCCeEEEEEEEeCCeeEE-
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDV-  402 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~-----~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~-  402 (940)
                      +.++.+.+|+++.|.|.+.|.|.|.|.|+|+|..+.......+.     ...+|.|.+++.+|+|.|+|.|.|..|... 
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            56788999999999999999999999999999988655433221     234799999999999999999999999764 


Q ss_pred             EEEEEEEe
Q psy11143        403 AEGYLTVT  410 (940)
Q Consensus       403 ~s~~L~V~  410 (940)
                      .++.|+|.
T Consensus        90 ~s~~L~Vl   97 (97)
T d1biha3          90 HSLKLTVV   97 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEC
Confidence            47788773

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=110.07  Aligned_cols=95  Identities=23%  Similarity=0.379  Sum_probs=73.4

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--e----eceEEEEcccccCCCeEEE
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--H----DGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~----~gs~L~I~~v~~~DsG~Yt  115 (940)
                      |..||.+....+.   ..+....|.|.+.|+|.|+|+|+|+|+.|.......+.  .    ..+.|.|.+++.+|+|.|+
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            5678876543222   24556778899999999999999999999877665543  1    1245899999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEecccCC
Q psy11143        116 CVAQNSEGSAESVAMIRINGHRAP  139 (940)
Q Consensus       116 C~a~n~~g~~~~~~~L~V~~~~~P  139 (940)
                      |.|.|..|..+.++.|.|...+.|
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P~P  102 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFLKEPFP  102 (105)
T ss_dssp             EEEEETTEEEEEEEEECCSCCCCC
T ss_pred             EEEEcCCCEEEEEEEEEEEeCCCC
Confidence            999999999888888887665443

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-11  Score=106.80  Aligned_cols=85  Identities=19%  Similarity=0.323  Sum_probs=68.2

Q ss_pred             CeEEeCC-CcEEEecCCeEEEEEEee-ccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         46 PIFIQRP-VSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        46 P~~~~~p-~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      |.++..| ....+.+|+++.|.|.+. |.|.++|+|++++.++.   .......++.|.|.+++.+|+|.|+|.|.|..|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g   79 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG---AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR   79 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC---CEEEESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee---eeeccCceeeEEcCccChhhCCcEEEEEEeCCC
Confidence            4444444 457788999999999985 78899999999887653   233345556789999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy11143        124 SAESVAMIRI  133 (940)
Q Consensus       124 ~~~~~~~L~V  133 (940)
                      ..+.++.|.|
T Consensus        80 ~~~~s~~l~V   89 (90)
T d1gsma1          80 TFQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             cEEEEEEEEE
Confidence            8888887776

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.22  E-value=8.5e-12  Score=109.94  Aligned_cols=82  Identities=22%  Similarity=0.385  Sum_probs=69.8

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCc-EEE-eeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRN-HKI-HRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~-~~i-~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      .|.|...|.++.+.+|+.++|.|.+.|.|.| .|.|+++|..+..... ... ...++|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            5788888889999999999999999999977 7999999998865443 222 235689999999999999999999999


Q ss_pred             eeEEE
Q psy11143        399 GEDVA  403 (940)
Q Consensus       399 G~~~~  403 (940)
                      |...+
T Consensus        82 G~~~s   86 (94)
T d1biha1          82 GVASS   86 (94)
T ss_dssp             EEEEC
T ss_pred             CEEEE
Confidence            97653

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.2e-12  Score=115.17  Aligned_cols=89  Identities=20%  Similarity=0.262  Sum_probs=73.4

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCe-EEEEEEEeCCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAG-VYNCVAQNSEG  123 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG-~YtC~a~n~~g  123 (940)
                      .|.+...+.+..+.+|+.+.|.|.+.|.|.|.|+|++++..+..............|.|.+++.+|.| .|+|.|.|..|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence            47888888899999999999999999999999999999987653322222233456899999999999 69999999999


Q ss_pred             ceEEEEEEEE
Q psy11143        124 SAESVAMIRI  133 (940)
Q Consensus       124 ~~~~~~~L~V  133 (940)
                      ..+.++.|.|
T Consensus        82 ~~~~s~~l~V   91 (92)
T d2ifga1          82 RAEVSVQVNV   91 (92)
T ss_dssp             ECCEEECCCC
T ss_pred             EEEEEEEEEE
Confidence            9888776654

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.6e-11  Score=105.08  Aligned_cols=80  Identities=23%  Similarity=0.272  Sum_probs=66.3

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      ...+.+|+.+.|.|.+.|.|.|.|.|++++..+... ..........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG-KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS-EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceee-eeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence            455679999999999999999999999988766432 2333344566899999999999999999999998888888877


Q ss_pred             e
Q psy11143        134 N  134 (940)
Q Consensus       134 ~  134 (940)
                      .
T Consensus        89 ~   89 (90)
T d1vcaa2          89 Y   89 (90)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.1e-11  Score=115.22  Aligned_cols=90  Identities=20%  Similarity=0.365  Sum_probs=71.3

Q ss_pred             cCCeEE-----EcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-----------------------------
Q psy11143        321 RAPRLV-----VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-----------------------------  366 (940)
Q Consensus       321 ~~P~i~-----~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-----------------------------  366 (940)
                      .||.|.     ..|..+.+.+|++++|.|.+.|.|.|.|.|++++..+...                             
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            466653     2355778999999999999999999999999976543211                             


Q ss_pred             CcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        367 RNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       367 ~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      .++.+..   ..+|.|.++..+|+|.|+|.|+|.+|..++.+.|.|.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            1222222   2369999999999999999999999999999999885

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.7e-11  Score=105.74  Aligned_cols=75  Identities=15%  Similarity=0.155  Sum_probs=64.2

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      +..|.+|++++|.|.+.|.|.|+|.|++++..+.        ..+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V   79 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV   79 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccce--------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEE
Confidence            3468899999999999999999999999876543        23456799999999999999999999998888888887


Q ss_pred             ecc
Q psy11143        134 NGH  136 (940)
Q Consensus       134 ~~~  136 (940)
                      .+.
T Consensus        80 ~~~   82 (84)
T d2nxyb2          80 LAF   82 (84)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.20  E-value=3.8e-11  Score=108.47  Aligned_cols=90  Identities=26%  Similarity=0.405  Sum_probs=68.9

Q ss_pred             CCCeEEeC-CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC----CC--CeEEE---------eeceEEEEcccc
Q psy11143         44 APPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS----DD--HVTYE---------HDGFVLVLNGVR  107 (940)
Q Consensus        44 ~pP~~~~~-p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~----~~--~~~~~---------~~gs~L~I~~v~  107 (940)
                      .+|.+... |.++++.+|+++.|.|.+.|.|.|.|.|+|++.....    ..  .....         .....|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            35766654 7889999999999999999999999999997654221    11  01110         223568999999


Q ss_pred             cCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143        108 ESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      .+|+|.|+|.|.|..|....++.|+|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999998888877

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.8e-11  Score=106.35  Aligned_cols=89  Identities=22%  Similarity=0.430  Sum_probs=71.4

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEee----cC--CCCeEEE--eeceEEEEcccc-cCCCeEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSL----DS--DDHVTYE--HDGFVLVLNGVR-ESDAGVY  114 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I----~~--~~~~~~~--~~gs~L~I~~v~-~~DsG~Y  114 (940)
                      ||.|...+....+.+|+.++|.|.+.|.|++ .+.|+|++...    ..  ..++.+.  ...+.|.|.++. .+|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            7889999999999999999999999999877 79999976322    11  1223333  334568999998 5799999


Q ss_pred             EEEEEeCCCceEEEEEEEE
Q psy11143        115 NCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L~V  133 (940)
                      +|.|.|..|.....+.|.|
T Consensus        82 ~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999999888887776

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=3.5e-11  Score=106.41  Aligned_cols=83  Identities=22%  Similarity=0.374  Sum_probs=71.2

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAM  130 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~  130 (940)
                      +.+.++.+|+.++|.|.+.+ +++.|.|+++|..+....+..+......|.|.+++.+|+|.|+|.|.|..|...+ .+.
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~   88 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIK   88 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCE
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEE
Confidence            45678999999999999876 5579999999999998888888777778899999999999999999999887765 566


Q ss_pred             EEEec
Q psy11143        131 IRING  135 (940)
Q Consensus       131 L~V~~  135 (940)
                      |.|..
T Consensus        89 L~V~~   93 (96)
T d1l6za2          89 LDIIF   93 (96)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            77653

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.1e-11  Score=107.12  Aligned_cols=91  Identities=19%  Similarity=0.300  Sum_probs=73.0

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccC---CCeEEEEECCEeecCC---CCeEEEe--------eceEEEEcccccCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHP---LPQMTWFHDGNSLDSD---DHVTYEH--------DGFVLVLNGVRESD  110 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P---~p~V~W~kdg~~I~~~---~~~~~~~--------~gs~L~I~~v~~~D  110 (940)
                      .+.|+..|.++++.+|++++|.|.+.|.|   .|.|.|+|++......   .......        ....|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            35788899999999999999999999988   5789999987543221   1222221        12358999999999


Q ss_pred             CeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        111 AGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       111 sG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      +|.|+|.|.|..|..+..+.|.|..
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999999888864

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.4e-11  Score=113.00  Aligned_cols=91  Identities=21%  Similarity=0.427  Sum_probs=72.1

Q ss_pred             CCCeEE-----eCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC----------------------------
Q psy11143         44 APPIFI-----QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----------------------------   90 (940)
Q Consensus        44 ~pP~~~-----~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~----------------------------   90 (940)
                      .||.+.     ..|..++|.+|++++|.|.+.|.|.|.|.|++++..+....                            
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            466653     34678899999999999999999999999999876553211                            


Q ss_pred             -CeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy11143         91 -HVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus        91 -~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~  134 (940)
                       +..+.  .....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence             22222  233569999999999999999999999998888888774

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.6e-11  Score=105.43  Aligned_cols=91  Identities=22%  Similarity=0.322  Sum_probs=71.7

Q ss_pred             EeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe-------eceEEEEcccccCCCeEE
Q psy11143         42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-------DGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        42 V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~-------~gs~L~I~~v~~~DsG~Y  114 (940)
                      |..||.+.....   -..+....|.|.+.|+|.|+|.|+|+|..|..+....+..       ..+.|.|.+++.+|+|.|
T Consensus         1 v~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   77 (103)
T d1wwbx_           1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY   77 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             CccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceE
Confidence            456777643222   2367888999999999999999999999998766554431       124589999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEec
Q psy11143        115 NCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L~V~~  135 (940)
                      +|.|+|..|..+..+.|.|..
T Consensus        78 ~C~a~N~~G~~~~~~~v~V~~   98 (103)
T d1wwbx_          78 TLIAKNEYGKDEKQISAHFMG   98 (103)
T ss_dssp             EEEEECSSCEEEEEEEECCSC
T ss_pred             EEEEeccCCEEEEEEEEEEEe
Confidence            999999999998887777654

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=1.1e-10  Score=103.22  Aligned_cols=86  Identities=23%  Similarity=0.518  Sum_probs=65.6

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCC-CeEEEEE-CCEeecC-CCCeEEE---eeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDS-DDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~-p~V~W~k-dg~~I~~-~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      +...|...++.+|+++.|.|.+.|.|+ ++|.|+| +|..+.. ..+..+.   .....|.|.+++.+|+|.|+|.|.|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            445677889999999999999999875 7999999 4555543 3344443   22356899999999999999999999


Q ss_pred             CCceE-EEEEEEE
Q psy11143        122 EGSAE-SVAMIRI  133 (940)
Q Consensus       122 ~g~~~-~~~~L~V  133 (940)
                      .|... .++.|+|
T Consensus        83 ~G~~~~~tv~l~V   95 (97)
T d1epfa1          83 DGTQSEATVNVKI   95 (97)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            98754 3555555

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9e-11  Score=106.06  Aligned_cols=85  Identities=21%  Similarity=0.255  Sum_probs=67.4

Q ss_pred             CceeecCCCe---EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----------eceEEEecCCCCCCeEEEEEEEe
Q psy11143        330 FDMRAPAGSS---VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----------TGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       330 ~~~~v~~G~~---vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----------~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .++.+..|..   ..+.|.+.|+|.|.+.|+++|..+..+.+.....          .+.|.|.++..+|+|.|+|.|+|
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N   84 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence            3444444444   4456699999999999999999987665444321          24699999999999999999999


Q ss_pred             CCeeEEEEEEEEEecCCC
Q psy11143        397 LLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       397 ~~G~~~~s~~L~V~~~~~  414 (940)
                      .+|...+++.|.|..+|.
T Consensus        85 ~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          85 PFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             TTEEEEEEEEECCCSCTT
T ss_pred             CCCEEEEEEEEEEEcCCC
Confidence            999999999999987763

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.8e-11  Score=107.90  Aligned_cols=87  Identities=20%  Similarity=0.203  Sum_probs=72.9

Q ss_pred             ccCCeEEEcCCceeecCCCeEEEEEeecCcCC-CeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       320 ~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~-p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      ..+|.+...+..+.+.+|++++|.|.+.|.|. ++|+|+|++..+....+.....+++|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            35688888888889999999999999999876 49999999998877777666677899999999999999999999875


Q ss_pred             eeEEEEEEEEE
Q psy11143        399 GEDVAEGYLTV  409 (940)
Q Consensus       399 G~~~~s~~L~V  409 (940)
                      +.   ++.|.|
T Consensus        84 ~~---t~~l~V   91 (93)
T d1n26a1          84 AG---TVHLLV   91 (93)
T ss_dssp             SC---EEEEEE
T ss_pred             cc---EEEEEE
Confidence            44   334554

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=1.8e-10  Score=101.89  Aligned_cols=86  Identities=20%  Similarity=0.378  Sum_probs=67.3

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCC-CeEEEEeC-Ceeecc-CCcEEEee----eceEEEecCCCCCCeEEEEEEEeC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSKD-EAEFVE-DRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~-p~i~W~k~-g~~i~~-~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      +.+.|....+..|+++.|.|.+.|.|. |.|.|+++ +..+.. ..++.+..    .++|.|.+++.+|+|.|+|.|.|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            345567788999999999999999985 79999994 454443 34555433    347999999999999999999999


Q ss_pred             CeeE-EEEEEEEEe
Q psy11143        398 LGED-VAEGYLTVT  410 (940)
Q Consensus       398 ~G~~-~~s~~L~V~  410 (940)
                      .|.. ++++.|.|.
T Consensus        83 ~G~~~~~tv~l~V~   96 (97)
T d1epfa1          83 DGTQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            9965 456777764

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=4.6e-11  Score=105.67  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=73.8

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee-eceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      +|.+.  +.+..+.+|++++|.|.+.+ |.+.|.|++++..+....+..+.. .++|.|.++..+|.|.|+|.|.|..|.
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   81 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV   81 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCC
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCC
Confidence            35443  45678899999999999976 568999999999998877776654 458999999999999999999999998


Q ss_pred             EE-EEEEEEEecCC
Q psy11143        401 DV-AEGYLTVTGEN  413 (940)
Q Consensus       401 ~~-~s~~L~V~~~~  413 (940)
                      .. ..+.|.|..+|
T Consensus        82 ~~S~~~~L~V~~~P   95 (96)
T d1l6za2          82 RRSNSIKLDIIFDP   95 (96)
T ss_dssp             EECCCCEEEECCSC
T ss_pred             eEEEeEEEEEEcCC
Confidence            75 46889997765

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.14  E-value=9.4e-11  Score=101.99  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=63.9

Q ss_pred             CceeecCCCeEEEEEeecCc-CCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE-EEEEE
Q psy11143        330 FDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYL  407 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~-~s~~L  407 (940)
                      ....+.+|++++|.|.+.+. |.+.+.|+|+|..+...     ..++.|.|.+++.+|+|.|+|.|.|..|... ..+.|
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-----~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l   82 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-----RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTI   82 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-----ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEE
Confidence            34568899999999999755 55699999999876422     2345799999999999999999999999765 56889


Q ss_pred             EEecC
Q psy11143        408 TVTGE  412 (940)
Q Consensus       408 ~V~~~  412 (940)
                      +|++|
T Consensus        83 ~V~~P   87 (88)
T d2fcba2          83 TVQAP   87 (88)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            88875

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8e-11  Score=104.02  Aligned_cols=88  Identities=18%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEE---eCCeeeccCCcEEEe---eeceEEEecCCCCCCeEEEEEEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS---KDEAEFVEDRNHKIH---RTGSLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~---k~g~~i~~~~~~~i~---~~~sL~I~~v~~~D~G~YtC~A~  395 (940)
                      +|.|. .+.++.+.+|++++|.|.+.|.|.|.+.|.   +++..+.......+.   ..++|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            57786 588899999999999999999998854432   233333222222222   23579999999999999999999


Q ss_pred             eCCeeEEE-EEEEEEe
Q psy11143        396 NLLGEDVA-EGYLTVT  410 (940)
Q Consensus       396 N~~G~~~~-s~~L~V~  410 (940)
                      |..|...+ .+.|.|+
T Consensus        81 N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          81 TEGGVGISNYAELVVK   96 (96)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEC
Confidence            99998655 4799885

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-10  Score=106.42  Aligned_cols=90  Identities=17%  Similarity=0.320  Sum_probs=71.0

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccC---CCeEEEEECCEeec---CCCCeEEEe--------eceEEEEcccccCCCe
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHP---LPQMTWFHDGNSLD---SDDHVTYEH--------DGFVLVLNGVRESDAG  112 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P---~p~V~W~kdg~~I~---~~~~~~~~~--------~gs~L~I~~v~~~DsG  112 (940)
                      .|+..|+++++.+|+.++|.|.+.|.|   .|+|.|+|++....   .....++..        ....|.|.+++.+|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            366788999999999999999999988   57999999875321   122232221        1235899999999999


Q ss_pred             EEEEEEEeCCCceEEEEEEEEecc
Q psy11143        113 VYNCVAQNSEGSAESVAMIRINGH  136 (940)
Q Consensus       113 ~YtC~a~n~~g~~~~~~~L~V~~~  136 (940)
                      .|+|.|.|..|..+..+.|.|...
T Consensus        82 ~Y~C~a~N~~G~~~~~~~L~V~~~  105 (113)
T d2dava1          82 NYRCEVTYKDKFDSCSFDLEVHES  105 (113)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECC
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcC
Confidence            999999999999888888888654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.2e-11  Score=106.78  Aligned_cols=74  Identities=22%  Similarity=0.334  Sum_probs=63.2

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM  130 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~  130 (940)
                      .|...++.+|+.+.|.|.+.|+|.|+|+|+|+|..+....           .+.+++.+|+|.|+|.|.|..|..+..+.
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-----------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~   78 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-----------ESVTVTRDLEGTYLCRARSTQGEVTREVT   78 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-----------SCEECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-----------eeeccccCCCCEEEEEEEcCCCEEEEEEE
Confidence            3678899999999999999999999999999998765332           34568899999999999999998888888


Q ss_pred             EEEec
Q psy11143        131 IRING  135 (940)
Q Consensus       131 L~V~~  135 (940)
                      |.|..
T Consensus        79 l~V~~   83 (84)
T d2oz4a3          79 VNVLS   83 (84)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            87753

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.11  E-value=1.1e-10  Score=101.76  Aligned_cols=80  Identities=15%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      ++++....|.+|++++|.|.+.+ .|.+++.|||||..+..      ...+..|.|.+++.+|+|.|+|.|.|..+...+
T Consensus         6 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2           6 LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             EEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------EEECCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce------eccccccEECccceeccceEEEEEEeCCCCeEE
Confidence            44555666899999999999975 56669999999988642      233445799999999999999999998876544


Q ss_pred             -EEEEEEe
Q psy11143        128 -VAMIRIN  134 (940)
Q Consensus       128 -~~~L~V~  134 (940)
                       .+.|+|.
T Consensus        80 ~~v~itV~   87 (89)
T d1fnla2          80 ETVNITIT   87 (89)
T ss_dssp             CCEEEEEE
T ss_pred             eeEEEEEE
Confidence             5566654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.11  E-value=1.1e-10  Score=101.52  Aligned_cols=81  Identities=19%  Similarity=0.316  Sum_probs=62.9

Q ss_pred             EeCCCcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      ++++....|.+|++++|.|.+.+ .|.+.+.|||+|..+..      ...+..|.|.+++.+|+|.|+|.|.|..|...+
T Consensus         4 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2           4 VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             EEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc------cccccccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            34445566899999999999975 46679999999988742      223446799999999999999999998876554


Q ss_pred             -EEEEEEec
Q psy11143        128 -VAMIRING  135 (940)
Q Consensus       128 -~~~L~V~~  135 (940)
                       .+.|+|.+
T Consensus        78 ~~v~l~V~~   86 (88)
T d2fcba2          78 KPVTITVQA   86 (88)
T ss_dssp             CCEEEEECC
T ss_pred             eeEEEEEeC
Confidence             56666654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=4.1e-11  Score=108.58  Aligned_cols=81  Identities=23%  Similarity=0.414  Sum_probs=61.9

Q ss_pred             eeecCCCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEEE-----------eeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        332 MRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKI-----------HRTGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~i-----------~~~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      ..+.+|++++|.|.+. |.|.+.|+|+|++..+........           ...+.|.|.+++.+|+|.|+|.|+|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            3678999999999985 899999999999987654322111           1234799999999999999999999999


Q ss_pred             eEEE--EEEEEEecC
Q psy11143        400 EDVA--EGYLTVTGE  412 (940)
Q Consensus       400 ~~~~--s~~L~V~~~  412 (940)
                      +...  .+.|.|.+.
T Consensus        92 ~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          92 TAMRSEAAHMDAVEL  106 (110)
T ss_dssp             CCEECCCEEEEEESS
T ss_pred             cEEEEEEEEEEEEec
Confidence            8766  455656543

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=7.1e-12  Score=112.48  Aligned_cols=89  Identities=22%  Similarity=0.401  Sum_probs=69.1

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeeccCCcEEE----------eeeceEEEecCCCCCCeEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKI----------HRTGSLRLYNIGPQDSGLY  390 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~~~~~~i----------~~~~sL~I~~v~~~D~G~Y  390 (940)
                      ||.+........+.+|++++|.|.+ .|.|.|.+.|+|++..+....+...          ...+.|.|.++..+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            5555444445678899999999998 5899999999999988754432221          1235799999999999999


Q ss_pred             EEEEEeCCeeEEEEEEEEEe
Q psy11143        391 RCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       391 tC~A~N~~G~~~~s~~L~V~  410 (940)
                      +|.|+|..|+...++.|+|.
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRME  101 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCE
T ss_pred             EEEEEECCCceEEEEEEEEE
Confidence            99999999998887666554

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.8e-11  Score=107.19  Aligned_cols=88  Identities=23%  Similarity=0.295  Sum_probs=68.1

Q ss_pred             eEEEcCCceeecCCCeEEEEEeecCcC-CCeEEEEeCCeeecc---CCcEEEee-----eceEEEecCCCCCCeEEEEEE
Q psy11143        324 RLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVE---DRNHKIHR-----TGSLRLYNIGPQDSGLYRCTA  394 (940)
Q Consensus       324 ~i~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~g~~i~~---~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A  394 (940)
                      .++..+....+..|+++.|.|.+.|.| .|.|+|+|++..+..   ........     ...|.|.++..+|+|.|+|.|
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            344566677899999999999999999 489999998865532   12222222     125999999999999999999


Q ss_pred             EeCCeeEEE-EEEEEEec
Q psy11143        395 SNLLGEDVA-EGYLTVTG  411 (940)
Q Consensus       395 ~N~~G~~~~-s~~L~V~~  411 (940)
                      .|..|.... ++.|.|.+
T Consensus        85 ~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEEE
Confidence            999998654 78888864

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.6e-10  Score=104.08  Aligned_cols=86  Identities=22%  Similarity=0.239  Sum_probs=68.2

Q ss_pred             CeEEEcCC-ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe---------------eeceEEEecCCCCC
Q psy11143        323 PRLVVKPF-DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---------------RTGSLRLYNIGPQD  386 (940)
Q Consensus       323 P~i~~~p~-~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~---------------~~~sL~I~~v~~~D  386 (940)
                      |.|...+. .+.+..|++++|.|.+.|.|.|.|.|+++|..+.........               ..++|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            55655443 356788999999999999999999999999887544322111               12469999999999


Q ss_pred             CeE-EEEEEEeCCeeEEEEEEEE
Q psy11143        387 SGL-YRCTASNLLGEDVAEGYLT  408 (940)
Q Consensus       387 ~G~-YtC~A~N~~G~~~~s~~L~  408 (940)
                      .|. |+|.|.|.+|..++.+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            995 9999999999998888775

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.5e-11  Score=107.35  Aligned_cols=90  Identities=21%  Similarity=0.412  Sum_probs=68.5

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccC-CCeEEEEECCEeecC---CCCeEEEee----ceEEEEcccccCCCeEEEEE
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDS---DDHVTYEHD----GFVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~kdg~~I~~---~~~~~~~~~----gs~L~I~~v~~~DsG~YtC~  117 (940)
                      +.|+..+...++.+|+++.|.|.+.|.| .|.|+|+|++..+..   ........+    ...|.|.+++.+|+|.|+|.
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCS   83 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEE
Confidence            3456677888999999999999999988 589999998875532   112222221    23489999999999999999


Q ss_pred             EEeCCCceEE-EEEEEEec
Q psy11143        118 AQNSEGSAES-VAMIRING  135 (940)
Q Consensus       118 a~n~~g~~~~-~~~L~V~~  135 (940)
                      |.|..|...+ .+.|.|..
T Consensus        84 A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          84 ANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEETTEEEECCCEEEEEEC
T ss_pred             EEcCCCeEEEEEEEEEEEE
Confidence            9999987665 67777653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.09  E-value=2.5e-10  Score=99.43  Aligned_cols=79  Identities=13%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             cCCceeecCCCeEEEEEeecCc-CCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE-EEE
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEG  405 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~-~s~  405 (940)
                      .+....+.+|++++|.|.+.+. |.+.+.|+|+|..+..     ...++.|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~-----~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v   82 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV   82 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce-----eccccccEECccceeccceEEEEEEeCCCCeEEeeE
Confidence            3444568899999999998754 5569999999987642     23456899999999999999999999999765 467


Q ss_pred             EEEEec
Q psy11143        406 YLTVTG  411 (940)
Q Consensus       406 ~L~V~~  411 (940)
                      .|+|++
T Consensus        83 ~itV~E   88 (89)
T d1fnla2          83 NITITQ   88 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            888875

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.8e-11  Score=105.72  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=65.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCC-CeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~-p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...+..+++.+|++++|.|.+.+.|+ ++|+|+|+|..+....+ .....+..|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-RWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCE-EEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceee-EEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            4678888889999999999999999988664 59999999998876544 344556678999999999999999997654


Q ss_pred             C
Q psy11143        123 G  123 (940)
Q Consensus       123 g  123 (940)
                      +
T Consensus        84 ~   84 (93)
T d1n26a1          84 A   84 (93)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=6e-11  Score=107.47  Aligned_cols=80  Identities=28%  Similarity=0.496  Sum_probs=60.9

Q ss_pred             cEEEecCCeEEEEEEee-ccCCCeEEEEECCEeecCCCCeE----------EEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         54 STTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVT----------YEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~----------~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      ...+.+|+.++|.|.+. |.|.+.|+|+|++..+.......          .......|.|.+++.+|+|.|+|.|.|..
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            34688999999999985 79999999999998875443221          11223457999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy11143        123 GSAESVAMIRI  133 (940)
Q Consensus       123 g~~~~~~~L~V  133 (940)
                      |....+..+.+
T Consensus        91 G~~~~s~~v~l  101 (110)
T d1f97a2          91 GTAMRSEAAHM  101 (110)
T ss_dssp             SCCEECCCEEE
T ss_pred             CcEEEEEEEEE
Confidence            98876444444

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.5e-10  Score=102.14  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=64.5

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE--CC-EeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH--DG-NSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k--dg-~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .|.|. .+.++.|.+|+++.|.|.+.|.|.|.+.|++  ++ ..+.......+.  .....|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            57775 6899999999999999999999877655432  22 222211112222  223458999999999999999999


Q ss_pred             eCCCceEE-EEEEEE
Q psy11143        120 NSEGSAES-VAMIRI  133 (940)
Q Consensus       120 n~~g~~~~-~~~L~V  133 (940)
                      |..|...+ .+.|.|
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            99998765 477776

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=1.3e-10  Score=103.72  Aligned_cols=89  Identities=15%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC----------CCCeEEEeeceEEEEcccccCCCeEEE
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS----------DDHVTYEHDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~----------~~~~~~~~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      |.+...+..+.+.+|++++|.|.+.|.|.|.|.|++++..+..          ....+....++.|.|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            5566677788999999999999999999999999986533211          001111123345899999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEe
Q psy11143        116 CVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus       116 C~a~n~~g~~~~~~~L~V~  134 (940)
                      |.|.|..|.....+.++|.
T Consensus        82 C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999998887766664

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.8e-10  Score=100.31  Aligned_cols=81  Identities=15%  Similarity=0.230  Sum_probs=62.8

Q ss_pred             EeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      ++++....|.+|++++|.|.+.+. |+..+.|||||..+....      ....|.|.+++.+|+|.|+|.|.|..+...+
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S   77 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------ENHNISITNATVEDSGTYYCTGKVWQLDYES   77 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC------CSSEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc------ccceEEEeeeeeecCcEEEEEEEeCCCCeEe
Confidence            344556668999999999999765 556999999999886432      2345799999999999999999998775543


Q ss_pred             -EEEEEEec
Q psy11143        128 -VAMIRING  135 (940)
Q Consensus       128 -~~~L~V~~  135 (940)
                       .+.|+|..
T Consensus        78 ~~v~i~V~~   86 (89)
T d1f2qa2          78 EPLNITVIK   86 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             eeEEEEEEe
Confidence             55666654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.8e-10  Score=99.18  Aligned_cols=80  Identities=16%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             CCceeecCCCeEEEEEeecCcC-CCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE-EEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGY  406 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~-~s~~  406 (940)
                      +....+.+|++++|.|.+.+.+ .+.+.|+|+|..+....     ..+.|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~   81 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLN   81 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEE
Confidence            3445688999999999997764 44999999998875432     345799999999999999999999998754 5678


Q ss_pred             EEEecCC
Q psy11143        407 LTVTGEN  413 (940)
Q Consensus       407 L~V~~~~  413 (940)
                      |+|+++|
T Consensus        82 i~V~~~P   88 (89)
T d1f2qa2          82 ITVIKAP   88 (89)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9998775

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.2e-11  Score=109.23  Aligned_cols=90  Identities=27%  Similarity=0.511  Sum_probs=69.5

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEe-eccCCCeEEEEECCEeecCCCCeEEE---------eeceEEEEcccccCCCeEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYE---------HDGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~~~~~~~~---------~~gs~L~I~~v~~~DsG~Y  114 (940)
                      ||.+........+.+|+.++|.|.+ .|.|.+.|.|+|++..+.........         .....|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            5655555556778999999999998 57999999999999987654322211         1234579999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEe
Q psy11143        115 NCVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus       115 tC~a~n~~g~~~~~~~L~V~  134 (940)
                      +|.|.|..|....++.++|.
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRME  101 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCE
T ss_pred             EEEEEECCCceEEEEEEEEE
Confidence            99999999988776555543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.7e-11  Score=109.81  Aligned_cols=94  Identities=26%  Similarity=0.357  Sum_probs=74.7

Q ss_pred             ccCCeEEEcCCceeecCCCeEEEEEeecCcC-CCeEEEEeCCeeeccC--CcEEEee-------eceEEEecCCCCC-Ce
Q psy11143        320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVED--RNHKIHR-------TGSLRLYNIGPQD-SG  388 (940)
Q Consensus       320 ~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~g~~i~~~--~~~~i~~-------~~sL~I~~v~~~D-~G  388 (940)
                      ..||.+. .+..+.+.+|+.+.|.|.+.|.| .+.+.|++++..+...  .++.+..       .++|.|.++..+| +|
T Consensus         5 ~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G   83 (115)
T d2crya1           5 NGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQT   83 (115)
T ss_dssp             CSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHS
T ss_pred             ecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCe
Confidence            4677765 45667889999999999999965 4589999999887543  3343322       1369999999999 69


Q ss_pred             EEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        389 LYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       389 ~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      .|+|.|.|..|+++..+.|.|++.+.
T Consensus        84 ~Y~C~A~N~~G~~~~~~~L~V~~~~~  109 (115)
T d2crya1          84 IYNCTAWNSFGSDTEIIRLKEQGSEM  109 (115)
T ss_dssp             CEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred             EEEEEEEECCCeEEEEEEEEEECCCC
Confidence            99999999999999999998886543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.7e-10  Score=102.11  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=66.4

Q ss_pred             eeecCCCeEEEEE------eecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE----
Q psy11143        332 MRAPAGSSVEIPC------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED----  401 (940)
Q Consensus       332 ~~v~~G~~vtL~C------~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~----  401 (940)
                      +.+..|....|.|      .+.++|.|.|.|+++|..+..+.......+++|.|.++..+|+|.|+|.|.|..|..    
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~v   88 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI   88 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEEEE
Confidence            4688999999999      678999999999999999987766666677899999999999999999999988743    


Q ss_pred             EEEEEEEEec
Q psy11143        402 VAEGYLTVTG  411 (940)
Q Consensus       402 ~~s~~L~V~~  411 (940)
                      +..+.|.|..
T Consensus        89 t~~i~~~v~~   98 (103)
T d1iray2          89 TRVIEFITLE   98 (103)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEECC
Confidence            3344444444

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.9e-10  Score=100.38  Aligned_cols=82  Identities=20%  Similarity=0.437  Sum_probs=65.3

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC--eEEEeec--eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~--~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +...+.++++.+|+++.|.|.+. .|.+.+.|+|+|.++..+..  +.+..++  ..|.|.+++.+|+|.|+|.|.|   
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec---
Confidence            34567889999999999999994 68889999999999876554  4444433  4689999999999999999965   


Q ss_pred             ceEEEEEEEEe
Q psy11143        124 SAESVAMIRIN  134 (940)
Q Consensus       124 ~~~~~~~L~V~  134 (940)
                       ...++.|+|.
T Consensus        79 -~~~~a~l~V~   88 (90)
T d1x44a1          79 -GQSSAKLSVD   88 (90)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -ceEEEEEEEE
Confidence             4556777775

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1e-10  Score=104.96  Aligned_cols=92  Identities=13%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecC-cCCC--eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p--~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .||.+.+.+....+.+|+.++|+|.+.| .|.|  ++.|++++..+...........++|.|..+..+|+|.|+|+|+|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~   82 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELD   82 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeC
Confidence            5788888888888999999999999986 5655  688999998875433222223457999999999999999999999


Q ss_pred             CeeEEEEEEEEEecC
Q psy11143        398 LGEDVAEGYLTVTGE  412 (940)
Q Consensus       398 ~G~~~~s~~L~V~~~  412 (940)
                      .|+...+..+.+..+
T Consensus        83 ~g~~~~~~~~~~s~p   97 (103)
T d1iama1          83 LRPQGLELFENTSAP   97 (103)
T ss_dssp             CGGGTSCEEEEECCC
T ss_pred             CCCccCeEeeeEcCC
Confidence            998877777777544

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4e-10  Score=100.43  Aligned_cols=88  Identities=18%  Similarity=0.375  Sum_probs=68.7

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeec-----------cCCcEEEeeeceEEEecCCCCCCeEEE
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-----------EDRNHKIHRTGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~-----------~~~~~~i~~~~sL~I~~v~~~D~G~Yt  391 (940)
                      |.+...+..+.+.+|++++|.|.+.|.|.|.|.|++++....           .........+++|.|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            455666677889999999999999999999999998543211           001111224568999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEe
Q psy11143        392 CTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       392 C~A~N~~G~~~~s~~L~V~  410 (940)
                      |.|.|..|.....+.|.|.
T Consensus        82 C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999998887777664

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8.3e-11  Score=105.45  Aligned_cols=89  Identities=12%  Similarity=0.262  Sum_probs=67.5

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC----------CeEEEeeceEEEEcccccCCCeEEE
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----------HVTYEHDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~----------~~~~~~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      +.+...+..+.+.+|++++|.|.+.|.|.|.|.|+|++..+....          ..+....+..|.|.+++.+|+|.|+
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            344555667889999999999999999999999999765432111          1111122346899999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEe
Q psy11143        116 CVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus       116 C~a~n~~g~~~~~~~L~V~  134 (940)
                      |.|.|..|.....+.|+|.
T Consensus        85 C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEETTSSCEECCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999998886666653

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8e-11  Score=105.57  Aligned_cols=88  Identities=18%  Similarity=0.368  Sum_probs=68.0

Q ss_pred             CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-----------CcEEEeeeceEEEecCCCCCCeEEE
Q psy11143        323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-----------RNHKIHRTGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-----------~~~~i~~~~sL~I~~v~~~D~G~Yt  391 (940)
                      +.+...+..+.+.+|++++|.|.+.|.|.|.+.|+|++..+...           .......+++|.|.+++.+|+|.|+
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            33444555678899999999999999999999999976543211           1111123468999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEe
Q psy11143        392 CTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       392 C~A~N~~G~~~~s~~L~V~  410 (940)
                      |.|.|..|.....+.|.|.
T Consensus        85 C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEETTSSCEECCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999999887777654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9.7e-10  Score=98.78  Aligned_cols=87  Identities=22%  Similarity=0.337  Sum_probs=67.5

Q ss_pred             CeEEeCCC-cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE----e----------eceEEEEcccccCC
Q psy11143         46 PIFIQRPV-STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE----H----------DGFVLVLNGVRESD  110 (940)
Q Consensus        46 P~~~~~p~-~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~----~----------~gs~L~I~~v~~~D  110 (940)
                      |.+...+. ...+..|+.+.|.|.+.|.|.|.|.|+++|..+.........    .          ..+.|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            55555443 356778999999999999999999999999988654432221    0          01358999999999


Q ss_pred             Ce-EEEEEEEeCCCceEEEEEEE
Q psy11143        111 AG-VYNCVAQNSEGSAESVAMIR  132 (940)
Q Consensus       111 sG-~YtC~a~n~~g~~~~~~~L~  132 (940)
                      .| .|+|.|.|..|..+..+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999887766654

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5.4e-10  Score=97.41  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=64.7

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeeec---eEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGED  401 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~~G~~  401 (940)
                      ..+.+..+.+|++++|.|.+. .|.|.+.|+|++..+..+.  ++.+..++   +|.|.++..+|+|.|+|.|.|.    
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----
T ss_pred             cCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----
Confidence            345678999999999999995 6889999999999886554  35554433   7999999999999999999873    


Q ss_pred             EEEEEEEEec
Q psy11143        402 VAEGYLTVTG  411 (940)
Q Consensus       402 ~~s~~L~V~~  411 (940)
                      ..++.|+|+.
T Consensus        80 ~~~a~l~V~~   89 (90)
T d1x44a1          80 QSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEEEE
Confidence            4567787764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.99  E-value=1.4e-10  Score=104.35  Aligned_cols=77  Identities=16%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             CCcEEEecCCeEEEEEEe-eccCCCeEEEEECCEeecCCCC--eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143         52 PVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV  128 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~~~~--~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~  128 (940)
                      +..+.|.+|+++.|.|.+ .+.|.+.|.|+|+|..+.....  .........|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            356889999999999998 6889999999999987654333  2233334457999999999999999999998876653

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.8e-10  Score=101.16  Aligned_cols=85  Identities=25%  Similarity=0.389  Sum_probs=65.9

Q ss_pred             CCcEEEecCCeEEE---EEEeeccCCCeEEEEECCEeecCCCCeEEEe---------eceEEEEcccccCCCeEEEEEEE
Q psy11143         52 PVSTTYSTGSTSRI---TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH---------DGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        52 p~~~~V~eGesv~L---~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~---------~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      |..+.+.+|....+   .|.+.|+|.|+|+|++||..|..........         ....|.|.++..+|+|.|+|.|.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            44555656665554   4588999999999999999998766554441         12458999999999999999999


Q ss_pred             eCCCceEEEEEEEEecc
Q psy11143        120 NSEGSAESVAMIRINGH  136 (940)
Q Consensus       120 n~~g~~~~~~~L~V~~~  136 (940)
                      |..|....++.|.|...
T Consensus        84 N~~G~~~~~i~v~v~~~  100 (107)
T d1he7a_          84 NPFGQASASIMAAFMDN  100 (107)
T ss_dssp             ETTEEEEEEEEECCCSC
T ss_pred             eCCCEEEEEEEEEEEcC
Confidence            99999888877777653

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.98  E-value=2e-10  Score=103.35  Aligned_cols=77  Identities=21%  Similarity=0.288  Sum_probs=63.1

Q ss_pred             CceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeecc--CCc-EEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143        330 FDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVE--DRN-HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG  405 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~--~~~-~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~  405 (940)
                      ..+.+.+|+.+.|.|.+ .|.|.|.|.|+|++..+..  ..+ +....+++|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            45789999999999997 7899999999999876532  233 3334467899999999999999999999999877664


Q ss_pred             E
Q psy11143        406 Y  406 (940)
Q Consensus       406 ~  406 (940)
                      .
T Consensus        92 ~   92 (105)
T d1cs6a2          92 F   92 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3e-10  Score=99.57  Aligned_cols=79  Identities=16%  Similarity=0.349  Sum_probs=61.6

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI  133 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V  133 (940)
                      ...+.+|+++.|.|.+.| |.|.+.|+++|..+...........+..|.|.+++.+|+|.|+|.|.|..+.......+.+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            467899999999999998 6679999999998865433222223334799999999999999999999887765544433

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8e-10  Score=98.59  Aligned_cols=86  Identities=15%  Similarity=0.242  Sum_probs=71.1

Q ss_pred             CCCcEEEecCCeEEEEEEee-ccCCCeEEEEECCEeec--CCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~~I~--~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      .|....+.+|+.+.|.|.+. +.|.+.|.|+|+|..+.  .....++...+..|.|.+++.+|+|.|+|.|.|..|....
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEE
Confidence            55667788999999999985 67889999999987654  2334455556667899999999999999999999999988


Q ss_pred             EEEEEEecc
Q psy11143        128 VAMIRINGH  136 (940)
Q Consensus       128 ~~~L~V~~~  136 (940)
                      ++.|.|...
T Consensus        88 ~~~L~V~~~   96 (101)
T d1iray1          88 KISAKFVEN   96 (101)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEeC
Confidence            888888753

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-09  Score=96.27  Aligned_cols=86  Identities=13%  Similarity=0.211  Sum_probs=66.2

Q ss_pred             cCCeEEEcCC-ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeee---ceEEEecCCCCCCeEEEEEEE
Q psy11143        321 RAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRT---GSLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       321 ~~P~i~~~p~-~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~  395 (940)
                      .+|.|..... ...+.+|+++.|.|.+. .|.|.+.|+|+|..+..+ .++.+...   .+|.|.++..+|+|.|+|.|.
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            3555555444 45789999999999995 588999999999998754 44555443   369999999999999999997


Q ss_pred             eCCeeEEEEEEEEEec
Q psy11143        396 NLLGEDVAEGYLTVTG  411 (940)
Q Consensus       396 N~~G~~~~s~~L~V~~  411 (940)
                      |.    ..++.|.|++
T Consensus        83 n~----~~s~~l~V~E   94 (94)
T d1pd6a_          83 GE----KCSTELFVKE   94 (94)
T ss_dssp             TE----EECCEEEEEC
T ss_pred             eE----EEEEEEEEEC
Confidence            73    4566777763

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.94  E-value=9.6e-11  Score=102.15  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=68.6

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      ..++.++.+.+|+++.|.|.+ +.|.|.+.|+|+|..+..+.++.+...+   +|.|.++..+|+|.|+|.|.|..+   
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~---   80 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS---   80 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC---
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE---
Confidence            344677899999999999998 5799999999999999888888876654   699999999999999999988654   


Q ss_pred             EEEEEEEec
Q psy11143        403 AEGYLTVTG  411 (940)
Q Consensus       403 ~s~~L~V~~  411 (940)
                       ++.|.|++
T Consensus        81 -sa~l~V~e   88 (89)
T d1tiua_          81 -AANLKVKE   88 (89)
T ss_dssp             -CEEEEEEC
T ss_pred             -EEEEEEEE
Confidence             46677764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.3e-11  Score=110.13  Aligned_cols=95  Identities=28%  Similarity=0.496  Sum_probs=74.7

Q ss_pred             EEEeCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCEeecCCC--CeEEEee------ceEEEEcccccCC
Q psy11143         40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDD--HVTYEHD------GFVLVLNGVRESD  110 (940)
Q Consensus        40 l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~I~~~~--~~~~~~~------gs~L~I~~v~~~D  110 (940)
                      |+|..||.+. .+..+.+.+|+.+.|.|.+.+. |.+.+.|++++..+....  ++.+...      .+.|.|.++..+|
T Consensus         2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            5678888775 4566778999999999999985 566899999999886543  2333211      1358999999999


Q ss_pred             -CeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        111 -AGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       111 -sG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                       +|.|+|.|.|..|..+..+.|.|.+
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEEC
Confidence             7999999999999988888777764

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.2e-09  Score=97.43  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             CCceeecCCCeEEEEEeec-CcCCCeEEEEeCCeeecc--CCcE-EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVE--DRNH-KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE  404 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~--~~~~-~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s  404 (940)
                      |..+.+.+|+.+.|.|.+. +.|.+.|.|+|++..+..  .... .....++|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            4445678899999999885 679999999999865432  2222 23356799999999999999999999999999999


Q ss_pred             EEEEEecC
Q psy11143        405 GYLTVTGE  412 (940)
Q Consensus       405 ~~L~V~~~  412 (940)
                      +.|.|...
T Consensus        89 ~~L~V~~~   96 (101)
T d1iray1          89 ISAKFVEN   96 (101)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99999864

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.93  E-value=1.2e-10  Score=101.58  Aligned_cols=82  Identities=17%  Similarity=0.265  Sum_probs=67.3

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      |...+.++++.+|+++.|.|.+ +.|.|.+.|+|||..+..+.++.+...+  ..|.|.+++.+|+|.|+|.|.|..+  
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~--   80 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS--   80 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC--
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE--
Confidence            4456688999999999999998 5788899999999999888887777443  5689999999999999999866433  


Q ss_pred             EEEEEEEEe
Q psy11143        126 ESVAMIRIN  134 (940)
Q Consensus       126 ~~~~~L~V~  134 (940)
                        ++.|.|.
T Consensus        81 --sa~l~V~   87 (89)
T d1tiua_          81 --AANLKVK   87 (89)
T ss_dssp             --CEEEEEE
T ss_pred             --EEEEEEE
Confidence              4556554

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.1e-10  Score=97.58  Aligned_cols=78  Identities=17%  Similarity=0.398  Sum_probs=63.5

Q ss_pred             eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCC-ceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEE
Q psy11143        238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR  316 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~-~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~  316 (940)
                      ...+.+|+++.|.|.+.| |.|.+.|+++|..+.... ++.+..++ +|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~-~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~   83 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK-NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA   83 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT-CEEECSCCGGGCEEEEEEEEEECSSSEEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee-EEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEE
Confidence            467889999999999998 778999999999886543 33444444 499999999999999999999999877655554


Q ss_pred             E
Q psy11143        317 I  317 (940)
Q Consensus       317 V  317 (940)
                      +
T Consensus        84 ~   84 (92)
T d1olza1          84 K   84 (92)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.6e-09  Score=96.88  Aligned_cols=73  Identities=21%  Similarity=0.332  Sum_probs=60.1

Q ss_pred             cEEEecCCeEEEEE------EeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         54 STTYSTGSTSRITC------LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        54 ~~~V~eGesv~L~C------~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      .+.+..|....|.|      .+.++|.|.|.|+|||.+|.......... +..|.|.+++.+|+|.|+|.|.|..+....
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~   86 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV-KDRLIVMNVAEKHRGNYTCHASYTYLGKQY   86 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE-TTEEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec-CCEEEEcccccccCcEEEEEEEECcCCEEE
Confidence            35688999999999      56789999999999999998655443333 445799999999999999999998876544

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.91  E-value=1.1e-09  Score=94.10  Aligned_cols=72  Identities=17%  Similarity=0.327  Sum_probs=60.0

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+..+|....|.+|++++|+|.+.+.|.+ .+.|++++..+..        ++..|.|.+++.+|+|.|+|.|.+..
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee--------cceeeEecCCcccCCEEEEEEccCCC
Confidence            46788888999999999999999999998877 4667888887653        23457999999999999999997654


Q ss_pred             C
Q psy11143        123 G  123 (940)
Q Consensus       123 g  123 (940)
                      .
T Consensus        76 ~   76 (84)
T d1fnla1          76 L   76 (84)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.90  E-value=1.1e-09  Score=94.40  Aligned_cols=81  Identities=22%  Similarity=0.303  Sum_probs=66.2

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      ..|.+.+.|....+.+|++|+|.|.+.+.|.+ .+.|+++|..+...       ++.|.|.+++.+|+|.|+|.|.|..+
T Consensus         3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~-------~~~l~i~~v~~~dsG~Y~C~a~ns~~   75 (85)
T d2fcba1           3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH-------TQPSYRFKANNNDSGEYTCQTGQTSL   75 (85)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC-------CSSEEEEECCGGGCEEEEEECTTSBC
T ss_pred             CCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc-------ccceEEeeccccCCcEEEEECCCCcc
Confidence            35667788888889999999999999999887 78999999887533       45799999999999999999999766


Q ss_pred             eEEEEEEEEEe
Q psy11143        400 EDVAEGYLTVT  410 (940)
Q Consensus       400 ~~~~s~~L~V~  410 (940)
                      +.  .+.|.|.
T Consensus        76 S~--~v~l~V~   84 (85)
T d2fcba1          76 SD--PVHLTVL   84 (85)
T ss_dssp             CC--CEEEEEE
T ss_pred             cc--cEEEEEE
Confidence            54  3455553

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.4e-09  Score=92.99  Aligned_cols=85  Identities=15%  Similarity=0.323  Sum_probs=63.9

Q ss_pred             CCeEEeCCC-cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC-CCeEEEee--ceEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPV-STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHD--GFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~-~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~-~~~~~~~~--gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +|.|..... ...|.+|+.+.|.|.+. .|.+.|.|+|||..|..+ ....+...  ...|.|.++..+|+|.|+|.|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            455555544 45799999999999985 588899999999999754 34455433  34689999999999999999955


Q ss_pred             CCCceEEEEEEEEe
Q psy11143        121 SEGSAESVAMIRIN  134 (940)
Q Consensus       121 ~~g~~~~~~~L~V~  134 (940)
                          ...++.|.|.
T Consensus        84 ----~~~s~~l~V~   93 (94)
T d1pd6a_          84 ----EKCSTELFVK   93 (94)
T ss_dssp             ----EEECCEEEEE
T ss_pred             ----EEEEEEEEEE
Confidence                3445555553

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.88  E-value=1.5e-09  Score=93.54  Aligned_cols=72  Identities=19%  Similarity=0.358  Sum_probs=59.7

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +|.+...|....|.+|+.|+|+|.+.+.|.+ .+.|++||..+....        ..|.|.+++.+|+|.|+|.+.|..+
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~--------~~l~i~~v~~~dsG~Y~C~a~ns~~   75 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT--------QPSYRFKANNNDSGEYTCQTGQTSL   75 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC--------SSEEEEECCGGGCEEEEEECTTSBC
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc--------cceEEeeccccCCcEEEEECCCCcc
Confidence            3567788888899999999999999988765 688999999886432        2469999999999999999987644


Q ss_pred             c
Q psy11143        124 S  124 (940)
Q Consensus       124 ~  124 (940)
                      +
T Consensus        76 S   76 (85)
T d2fcba1          76 S   76 (85)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.88  E-value=1.7e-09  Score=92.98  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=64.7

Q ss_pred             ccCCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       320 ~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      .++|.+...|....+.+|++++|.|.+.|.|.+ .+.|++++..+..       ...+|.|.+++.+|+|.|+|.|.|..
T Consensus         3 lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee-------cceeeEecCCcccCCEEEEEEccCCC
Confidence            356778888888899999999999999999988 5677888876643       34579999999999999999998865


Q ss_pred             eeEEEEEEEEE
Q psy11143        399 GEDVAEGYLTV  409 (940)
Q Consensus       399 G~~~~s~~L~V  409 (940)
                      ++.  .+.|.|
T Consensus        76 ~S~--~v~L~V   84 (84)
T d1fnla1          76 LSD--PVQLEV   84 (84)
T ss_dssp             CCC--CEEEEE
T ss_pred             ccc--cEEEEC
Confidence            543  344443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.6e-10  Score=94.70  Aligned_cols=79  Identities=20%  Similarity=0.347  Sum_probs=60.4

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +|.+..+|....|.+|++++|+|.+.+.|.+ .+.|++++..+...        +..|.|.+++.+|+|.|+|.|.|..+
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~i~~v~~~d~G~Y~C~a~~s~~   72 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET--------NSSLNIVNAKFEDSGEYKCQHQQVNE   72 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC--------SSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc--------cceeEECCCChhhCCcEEEEecCCCC
Confidence            4778888988899999999999999998877 56678999887643        34579999999999999999977544


Q ss_pred             ceEEEEEEEE
Q psy11143        124 SAESVAMIRI  133 (940)
Q Consensus       124 ~~~~~~~L~V  133 (940)
                      +.  .+.|.|
T Consensus        73 S~--~v~l~V   80 (82)
T d1f2qa1          73 SE--PVYLEV   80 (82)
T ss_dssp             CC--CEEEEE
T ss_pred             cc--cEEEEE
Confidence            33  344444

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.5e-09  Score=95.69  Aligned_cols=90  Identities=13%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             cCCeeEecCCceeecCCCcEEEEEEeCC-CCCC--eEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcC
Q psy11143        137 RAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       137 ~~P~~~~~p~~~~v~~Ge~vtL~C~v~g-~P~p--~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~  213 (940)
                      .++.+.+.+.+..+.+|+.++|+|.+.| +|.+  +++|++++..+.............|.|..+..+|.|.|+|.|+|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~   82 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELD   82 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeC
Confidence            3567778888888999999999999986 5655  588999998886543332233457999999999999999999999


Q ss_pred             Ccceeeeeeeeec
Q psy11143        214 LGEDVAEGYLTVT  226 (940)
Q Consensus       214 ~g~~s~s~~L~V~  226 (940)
                      .|.......+.+.
T Consensus        83 ~g~~~~~~~~~~s   95 (103)
T d1iama1          83 LRPQGLELFENTS   95 (103)
T ss_dssp             CGGGTSCEEEEEC
T ss_pred             CCCccCeEeeeEc
Confidence            9988777766665

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.82  E-value=1.4e-09  Score=98.74  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=64.2

Q ss_pred             ceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeecc-------CCcEEEeeeceEEEecCCCCCCe---EEEEEEEeCCe
Q psy11143        331 DMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVE-------DRNHKIHRTGSLRLYNIGPQDSG---LYRCTASNLLG  399 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~-------~~~~~i~~~~sL~I~~v~~~D~G---~YtC~A~N~~G  399 (940)
                      +.++.+|++++|.|.+ .|.|.|.+.|+|++..+..       ..++....+++|.|.+++.+|+|   .|+|.|.|..|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            3467899999999997 8999999999998765432       23455566789999999998876   79999999999


Q ss_pred             eEEEEEEEEEe
Q psy11143        400 EDVAEGYLTVT  410 (940)
Q Consensus       400 ~~~~s~~L~V~  410 (940)
                      .......+.+.
T Consensus        91 ~~~~~~~~~~i  101 (111)
T d1biha2          91 DEEVVLVEYEI  101 (111)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CceEEEEEEEe
Confidence            88876655544

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.2e-09  Score=91.77  Aligned_cols=80  Identities=24%  Similarity=0.359  Sum_probs=62.4

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE  400 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~  400 (940)
                      .|.|.+.|....+.+|++++|.|.+.+.|.+ .+.|++++..+...       ..+|.|.+++.+|+|.|+|.|.|..++
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~v~~~d~G~Y~C~a~~s~~S   73 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVNAKFEDSGEYKCQHQQVNES   73 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------SSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc-------cceeEECCCChhhCCcEEEEecCCCCc
Confidence            3777888888889999999999999999988 56678888776532       357999999999999999999987664


Q ss_pred             EEEEEEEEEe
Q psy11143        401 DVAEGYLTVT  410 (940)
Q Consensus       401 ~~~s~~L~V~  410 (940)
                      .  .+.|.|.
T Consensus        74 ~--~v~l~V~   81 (82)
T d1f2qa1          74 E--PVYLEVF   81 (82)
T ss_dssp             C--CEEEEEE
T ss_pred             c--cEEEEEE
Confidence            4  4566664

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.4e-09  Score=96.28  Aligned_cols=84  Identities=13%  Similarity=0.083  Sum_probs=60.4

Q ss_pred             EcCCceeecCCCeEEEEEeecC-cC--CCeEEEEeCCeeeccCCcEEEe-----eeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDG-EP--LPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g-~P--~p~i~W~k~g~~i~~~~~~~i~-----~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      +.+....+.+|+.++|+|.+.| .|  .++|+|+|++..+.........     ....|.|.....+|.|.|+|+|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            3445567889999999999986 44  4589999999987543211111     12357777778888889999999998


Q ss_pred             eeEEEEEEEEEe
Q psy11143        399 GEDVAEGYLTVT  410 (940)
Q Consensus       399 G~~~~s~~L~V~  410 (940)
                      |.......+.+.
T Consensus        87 ~~~~~~~~~~~s   98 (106)
T d1zxqa1          87 MSRGGNIFHKHS   98 (106)
T ss_dssp             GGGTCCEEEEEC
T ss_pred             CCCCCeeEeccc
Confidence            866555555554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.3e-09  Score=95.31  Aligned_cols=86  Identities=16%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeec-cC--CCeEEEEECCEeecCCCCeEEE----eeceEEEEcccccCCCeEEEEEEE
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEG-HP--LPQMTWFHDGNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g-~P--~p~V~W~kdg~~I~~~~~~~~~----~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .+.+.+....+.+|+.++|+|.+.| +|  .++|+|+|+|+.|.........    ...+.|.|.....+|.|.|+|+|.
T Consensus         4 ~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1           4 QVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAV   83 (106)
T ss_dssp             CCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             CCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEE
Confidence            3344556667899999999999986 44  4589999999988643221111    122457788778888889999999


Q ss_pred             eCCCceEEEEEEE
Q psy11143        120 NSEGSAESVAMIR  132 (940)
Q Consensus       120 n~~g~~~~~~~L~  132 (940)
                      |..+.......+.
T Consensus        84 n~~~~~~~~~~~~   96 (106)
T d1zxqa1          84 LDLMSRGGNIFHK   96 (106)
T ss_dssp             EECGGGTCCEEEE
T ss_pred             ecCCCCCCeeEec
Confidence            9877544333333

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.66  E-value=2e-08  Score=90.84  Aligned_cols=79  Identities=25%  Similarity=0.390  Sum_probs=60.5

Q ss_pred             eeEEecCCeEEEEEEE-eeeCCCeEEEEECCeecCCC-------CceEEeecCeEEEEeeeccCCCe---EEEEEEEeCC
Q psy11143        238 STTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSD-------DHVTYEHDGFVLVLNGVRESDAG---VYNCVAQNSE  306 (940)
Q Consensus       238 ~~~v~~G~~v~L~C~v-~G~P~p~ItW~k~g~~l~~~-------~~~~~~~~g~sL~I~~v~~~DsG---~YtC~A~N~~  306 (940)
                      +.++.+|+++.|.|.+ .|.|.|.+.|+|++..+...       .++....++. |.|.+++..|+|   .|+|.|.|..
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~-L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGN-LYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSC-EEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccc-cEEeeeEeeccCCceEEEEEEEeCC
Confidence            3456789999999986 89999999999987665422       2233444444 999999988776   7999999999


Q ss_pred             CCceeEEEEEE
Q psy11143        307 GSAESVAMIRI  317 (940)
Q Consensus       307 Gs~~~s~~l~V  317 (940)
                      |.......+.+
T Consensus        90 g~~~~~~~~~~  100 (111)
T d1biha2          90 VDEEVVLVEYE  100 (111)
T ss_dssp             CSSCEEEEEEE
T ss_pred             CCceEEEEEEE
Confidence            98876554333

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.7e-08  Score=84.51  Aligned_cols=76  Identities=21%  Similarity=0.368  Sum_probs=57.4

Q ss_pred             ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc------------CCcEEEe-eeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE------------DRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~------------~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .+....|++|+|.|.+. .|.+.|.|++++..+..            ..+..+. .+++|+|.+++.+|+|.|+|.|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            45778999999999875 68889999999876531            1122221 2458999999999999999999998


Q ss_pred             CeeEEEEEEEEE
Q psy11143        398 LGEDVAEGYLTV  409 (940)
Q Consensus       398 ~G~~~~s~~L~V  409 (940)
                      .++..  +.|+|
T Consensus        83 ~~t~~--~~l~V   92 (93)
T d1ccza1          83 TDTMK--FFLYV   92 (93)
T ss_dssp             CSCEE--EEEEE
T ss_pred             CcEEE--EEEEE
Confidence            77665  44544

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=7.8e-07  Score=81.41  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             ceeecCCCeEEEEEeecCcC---CCeEEEEeCCeee-----------c------cCCcEEEee------eceEEEecCCC
Q psy11143        331 DMRAPAGSSVEIPCKPDGEP---LPRISWSKDEAEF-----------V------EDRNHKIHR------TGSLRLYNIGP  384 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P---~p~i~W~k~g~~i-----------~------~~~~~~i~~------~~sL~I~~v~~  384 (940)
                      .+.+..|++|+|.|.+...+   ...|.|++.+...           .      ...+..+..      +.+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            46788999999999975332   2379999864310           0      012223221      34799999999


Q ss_pred             CCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143        385 QDSGLYRCTASNLLGEDVAEGYLTVTGENS  414 (940)
Q Consensus       385 ~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~  414 (940)
                      +|+|.|+|.+.+..|..+..+.|+|.+|..
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVEDPFY  120 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECTTT
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEeCCCE
Confidence            999999999999999999999999998754

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=2.2e-07  Score=81.86  Aligned_cols=79  Identities=16%  Similarity=0.278  Sum_probs=60.7

Q ss_pred             eeecCCCeEEEEEeecCc--CCCeEEEEeCCeeec----------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143        332 MRAPAGSSVEIPCKPDGE--PLPRISWSKDEAEFV----------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~--P~p~i~W~k~g~~i~----------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G  399 (940)
                      +....|++|+|.|.....  +...|.|+|++..+.          .+.+..+..+++|.|.+++.+|+|.|+|.+.|..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            456789999999963222  224899999887552          23455666788999999999999999999999999


Q ss_pred             eE--EEEEEEEEe
Q psy11143        400 ED--VAEGYLTVT  410 (940)
Q Consensus       400 ~~--~~s~~L~V~  410 (940)
                      ..  +..+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            76  456667664

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1e-07  Score=82.85  Aligned_cols=78  Identities=12%  Similarity=0.158  Sum_probs=56.5

Q ss_pred             CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecC------------CCCeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS------------DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~------------~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +++...+|++|+|.|.+ +.|.+.|.|++++..+..            ..+..+......|+|.+++.+|+|.|+|.+.|
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            35678899999999986 458889999999876631            11222222334579999999999999999988


Q ss_pred             CCCceEEEEEEEE
Q psy11143        121 SEGSAESVAMIRI  133 (940)
Q Consensus       121 ~~g~~~~~~~L~V  133 (940)
                      ..+..+  ..|+|
T Consensus        82 ~~~t~~--~~l~V   92 (93)
T d1ccza1          82 ITDTMK--FFLYV   92 (93)
T ss_dssp             CCSCEE--EEEEE
T ss_pred             CCcEEE--EEEEE
Confidence            766543  44443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=1.8e-06  Score=78.93  Aligned_cols=83  Identities=17%  Similarity=0.306  Sum_probs=58.2

Q ss_pred             CcEEEecCCeEEEEEEeecc---CCCeEEEEECCEee-----------c------CCCCeEEE-----eeceEEEEcccc
Q psy11143         53 VSTTYSTGSTSRITCLVEGH---PLPQMTWFHDGNSL-----------D------SDDHVTYE-----HDGFVLVLNGVR  107 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~---P~p~V~W~kdg~~I-----------~------~~~~~~~~-----~~gs~L~I~~v~  107 (940)
                      ..+.+.+|++|+|.|.+...   ....|.|++.+...           .      ...+..+.     .....|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            45788999999999998642   23479999865320           0      01122332     113568999999


Q ss_pred             cCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        108 ESDAGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      .+|+|.|+|.+.+..+..+..+.|+|..
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            9999999999999887777777777764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=5.8e-07  Score=80.38  Aligned_cols=77  Identities=18%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             eecCCCeEEEEEeecCcCCCeEEEEeCCee-----e-----------c---cCCcEEEeeeceEEEecCCCCCCeEEEEE
Q psy11143        333 RAPAGSSVEIPCKPDGEPLPRISWSKDEAE-----F-----------V---EDRNHKIHRTGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       333 ~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~-----i-----------~---~~~~~~i~~~~sL~I~~v~~~D~G~YtC~  393 (940)
                      .+.+|++|+|.|.........+.|+|....     +           .   ..+|..+..+++|.|.+++.+|+|.|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            467999999999844333459999985431     1           0   12467777788999999999999999999


Q ss_pred             EEeCCe-eEEEEEEEEE
Q psy11143        394 ASNLLG-EDVAEGYLTV  409 (940)
Q Consensus       394 A~N~~G-~~~~s~~L~V  409 (940)
                      +.+..+ ...+++.|.|
T Consensus        90 v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          90 MTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEETTEEECCCCEEECC
T ss_pred             EEECCCCEEEEEEEEEE
Confidence            998865 4445666654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=1.8e-06  Score=75.80  Aligned_cols=79  Identities=14%  Similarity=0.214  Sum_probs=56.2

Q ss_pred             cEEEecCCeEEEEEEee-c-cCCCeEEEEECCEeecC----------CCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         54 STTYSTGSTSRITCLVE-G-HPLPQMTWFHDGNSLDS----------DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~-g-~P~p~V~W~kdg~~I~~----------~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      .+....|++|+|.|... . .....|.|+|++..+..          ..+.....++ .|+|.+++.+|+|.|+|.+.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng-SL~I~nl~~~DsG~Y~c~v~~~   82 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-DLKIKNLTRDDSGTYNVTVYST   82 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS-CEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc-cEEEeCCCHHHCEEEEEEEEeC
Confidence            35567899999999642 2 23347999999876631          1122222344 4799999999999999999999


Q ss_pred             CCceEE--EEEEEE
Q psy11143        122 EGSAES--VAMIRI  133 (940)
Q Consensus       122 ~g~~~~--~~~L~V  133 (940)
                      .|....  .+.|.|
T Consensus        83 ~g~~~~~~~~~L~V   96 (98)
T d1hnga1          83 NGTRILNKALDLRI   96 (98)
T ss_dssp             TCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            998754  444554

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=1.3e-06  Score=78.11  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=57.0

Q ss_pred             eeecCCCcEEEEEEeCCCCCCeEEEeeCCeecc-------------------ccCceEEeeeceEEEeecccCCCceEEE
Q psy11143        148 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-------------------EDRNHKIHRTGSLRLYNIGPQDSGLYRC  208 (940)
Q Consensus       148 ~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~-------------------~~~~~~~~~~~sL~I~~v~~~DsG~YtC  208 (940)
                      ..+.+|++|.|.|.........+.|+|......                   -..|..+..+++|.|.+++.+|+|.|+|
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEE
Confidence            447799999999985544456899998432211                   0235566677899999999999999999


Q ss_pred             EEEcCCc-ceeeeeeeee
Q psy11143        209 TASNLLG-EDVAEGYLTV  225 (940)
Q Consensus       209 ~a~N~~g-~~s~s~~L~V  225 (940)
                      .+.+..+ ..+..+.|.|
T Consensus        89 ~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          89 DMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEETTEEECCCCEEECC
T ss_pred             EEEECCCCEEEEEEEEEE
Confidence            9987654 4555666665

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=4.6e-06  Score=75.54  Aligned_cols=82  Identities=17%  Similarity=0.338  Sum_probs=55.6

Q ss_pred             CcEEEecCCeEEEEEEeeccCC----CeEEEEECCEe----------------ec-----CCCCeEEEe-----eceEEE
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPL----PQMTWFHDGNS----------------LD-----SDDHVTYEH-----DGFVLV  102 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~----p~V~W~kdg~~----------------I~-----~~~~~~~~~-----~gs~L~  102 (940)
                      ..+.+.+|++++|.|.+...+.    ..+.|++....                ..     ...+..+..     ....|.
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            3467889999999999875432    36889863111                00     011223321     123589


Q ss_pred             EcccccCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy11143        103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRIN  134 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~  134 (940)
                      |.+++.+|+|.|.|.+.+..+.....+.|+|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999887766666667664

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=5.4e-06  Score=75.07  Aligned_cols=80  Identities=21%  Similarity=0.342  Sum_probs=58.3

Q ss_pred             ceeecCCCeEEEEEeecCcCCC----eEEEEeCCee----------------ec-----cCCcEEEee------eceEEE
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLP----RISWSKDEAE----------------FV-----EDRNHKIHR------TGSLRL  379 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p----~i~W~k~g~~----------------i~-----~~~~~~i~~------~~sL~I  379 (940)
                      .+.+.+|++|+|.|.....+.+    .+.|++....                ..     ...+..+..      ..+|+|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            3577899999999998754432    6889863110                00     012333322      237999


Q ss_pred             ecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143        380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT  410 (940)
Q Consensus       380 ~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~  410 (940)
                      .+++.+|+|.|.|.+.|..|.....+.|+|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999999999888888885

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.7e-06  Score=72.55  Aligned_cols=82  Identities=12%  Similarity=0.124  Sum_probs=56.9

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe---EEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~---~~~~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      .+|.+...|.. .|..|++|+|.|.+. .+...+.|+|+|.........   ........+.|.+|+.+|+|.|+|...+
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            36788888875 588999999999875 355689999987532211111   1112334579999999999999999988


Q ss_pred             CCCceEE
Q psy11143        121 SEGSAES  127 (940)
Q Consensus       121 ~~g~~~~  127 (940)
                      .......
T Consensus        84 ~~~~S~~   90 (99)
T d1ucta1          84 GHYRFRY   90 (99)
T ss_dssp             TTTEEEE
T ss_pred             CCcccCC
Confidence            7654443

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=9.8e-06  Score=70.49  Aligned_cols=77  Identities=14%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEE-EeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY-EHDGFVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~-~~~gs~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +|.+...|..+ |..|+.|+|.|.... +...+.|+|+|........... ..+...+.|.+|+.+|+|.|+|...+...
T Consensus         4 KPsLsa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1           4 KPFIWAEPHFM-VPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeeCCCc-ccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            57788888665 789999999998743 4558999999875431110000 12224579999999999999999877544

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.6e-05  Score=69.64  Aligned_cols=80  Identities=13%  Similarity=0.095  Sum_probs=57.2

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEE----EeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK----IHRTGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~----i~~~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      .+|.+...|.. .+..|++|+|.|.+. .+...+.|+|+|..........    ......+.|.+++.+|+|.|.|...|
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            46888887764 588999999999875 4556999999774221111111    11234699999999999999999999


Q ss_pred             CCeeEE
Q psy11143        397 LLGEDV  402 (940)
Q Consensus       397 ~~G~~~  402 (940)
                      ..+...
T Consensus        84 ~~~~S~   89 (99)
T d1ucta1          84 GHYRFR   89 (99)
T ss_dssp             TTTEEE
T ss_pred             CCcccC
Confidence            876433

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=4.2e-05  Score=68.69  Aligned_cols=75  Identities=21%  Similarity=0.329  Sum_probs=52.6

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEEC--CEe---e----------cCCCCeEEEe----eceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHD--GNS---L----------DSDDHVTYEH----DGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kd--g~~---I----------~~~~~~~~~~----~gs~L~I~~v~  107 (940)
                      +...|..+.+.+|++|+|.|.+.+. ....+.|||.  |+.   +          ....++.+..    ....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            4567888999999999999998643 3457899972  211   1          1223444442    12458999999


Q ss_pred             cCCCeEEEEEEEeCC
Q psy11143        108 ESDAGVYNCVAQNSE  122 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~  122 (940)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          82 RNDSGIYLCGAISLH   96 (114)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cCCCeEEEEEEEeCC
Confidence            999999999987543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2e-05  Score=68.49  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCc--EEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~--~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      ++|.+...|.. .+..|++|+|.|... .+...+.|+|+|........  ........+.|.+++..|+|.|+|...+..
T Consensus         3 PKPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           3 PKPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            56888888865 478999999999975 44568999999864321111  001122479999999999999999988876


Q ss_pred             ee
Q psy11143        399 GE  400 (940)
Q Consensus       399 G~  400 (940)
                      +.
T Consensus        81 ~~   82 (95)
T d1olla1          81 LW   82 (95)
T ss_dssp             EE
T ss_pred             Cc
Confidence            53

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.85  E-value=3.1e-05  Score=68.76  Aligned_cols=72  Identities=21%  Similarity=0.424  Sum_probs=51.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e-------c--CCCCeEEE--eeceEEEEcccccCCCe
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L-------D--SDDHVTYE--HDGFVLVLNGVRESDAG  112 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I-------~--~~~~~~~~--~~gs~L~I~~v~~~DsG  112 (940)
                      ...|..+++.+|++|+|.|..++.....+.|||.  |..   +       .  ...++...  .....|.|.+++.+|+|
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVA   84 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCC
Confidence            4557788999999999999987655557999983  111   0       0  11233333  23356999999999999


Q ss_pred             EEEEEEEe
Q psy11143        113 VYNCVAQN  120 (940)
Q Consensus       113 ~YtC~a~n  120 (940)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1ospl1          85 TYFCQQYW   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             cEEEeecc
Confidence            99998754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=4.8e-05  Score=67.41  Aligned_cols=73  Identities=23%  Similarity=0.421  Sum_probs=51.6

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CE---ee-------c--CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GN---SL-------D--SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~---~I-------~--~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++|+|.|..+......+.|||.  +.   .+       .  ...+....  .....|+|.+++.+|+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            44667888999999999999987655557999973  11   11       0  11223222  2334589999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1kcvl1          84 ADYYCGQSY   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEecC
Confidence            999998753

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=3.4e-05  Score=68.45  Aligned_cols=73  Identities=16%  Similarity=0.360  Sum_probs=51.4

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEee----c--------CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL----D--------SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I----~--------~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++|+|.|.........+.|||.  |+..    .        ...+....  .+...|.|.+++.+|+
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            34567788899999999999987666667999973  2211    0        11223222  2234689999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1c5cl1          84 ADYYCLQYA   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEecCc
Confidence            999998754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.9e-05  Score=71.03  Aligned_cols=86  Identities=16%  Similarity=0.274  Sum_probs=55.9

Q ss_pred             eCCCcEEEecCCeEEEEEEeecc---CCCeEEEEECCEe-----e---------cCCCCeEEEee----ceEEEEccccc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHDGNS-----L---------DSDDHVTYEHD----GFVLVLNGVRE  108 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~---P~p~V~W~kdg~~-----I---------~~~~~~~~~~~----gs~L~I~~v~~  108 (940)
                      ..|..+.+.+|++|+|.|.....   ....+.|+|....     +         ....+..+..+    ...|.|.+++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            46788899999999999987432   2346789874311     1         01123333311    24589999999


Q ss_pred             CCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143        109 SDAGVYNCVAQNSEGSAESVAMIRING  135 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g~~~~~~~L~V~~  135 (940)
                      +|+|.|.|.+..........+.|+|..
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            999999999875544444456666654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.79  E-value=4.5e-05  Score=68.56  Aligned_cols=75  Identities=17%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CE---ee---------cCCCCeEEE----eeceEEEEcccccC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GN---SL---------DSDDHVTYE----HDGFVLVLNGVRES  109 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~---~I---------~~~~~~~~~----~~gs~L~I~~v~~~  109 (940)
                      +...|..+.+.+|++|+|.|.........+.|||.  |+   .|         ....++++.    .....|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            45667788899999999999987666668999973  21   11         011223333    12334899999999


Q ss_pred             CCeEEEEEEEeCC
Q psy11143        110 DAGVYNCVAQNSE  122 (940)
Q Consensus       110 DsG~YtC~a~n~~  122 (940)
                      |+|.|.|.+....
T Consensus        84 Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          84 DSALYYCALFLAS   96 (115)
T ss_dssp             GCEEEEEEEEECS
T ss_pred             cCccceEEEEcCC
Confidence            9999999887643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.79  E-value=3.1e-05  Score=68.62  Aligned_cols=73  Identities=19%  Similarity=0.392  Sum_probs=51.2

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CE-e-e--c--------CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GN-S-L--D--------SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~-~-I--~--------~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++|+|.|.........+.||+.  |. . +  .        ...+....  .....|.|.+++.+|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            45567888899999999999987655556999973  11 1 0  0        11233333  2234689999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+..
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.78  E-value=2.9e-05  Score=68.87  Aligned_cols=73  Identities=22%  Similarity=0.470  Sum_probs=51.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEee----------c--CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL----------D--SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I----------~--~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      ++..|..+.|.+|++|+|.|.........+.|||.  |+..          .  ...++...  .+...|.|.+++.+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            34567788899999999999986655557999973  2210          0  11233332  2234599999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (106)
T d1i8ka_          84 GDYYCLQSF   92 (106)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeEecCc
Confidence            999998654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.77  E-value=2.9e-05  Score=69.57  Aligned_cols=76  Identities=18%  Similarity=0.442  Sum_probs=53.5

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe----e--cC------CCCeEEE----eeceEEEEcccccC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS----L--DS------DDHVTYE----HDGFVLVLNGVRES  109 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~----I--~~------~~~~~~~----~~gs~L~I~~v~~~  109 (940)
                      +...|..+.+.+|++|+|.|..++.....+.|||.  |+.    +  ..      ..+.+..    .....|.|.+++.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            45667888999999999999987766567899983  211    0  01      1122222    12245899999999


Q ss_pred             CCeEEEEEEEeCCC
Q psy11143        110 DAGVYNCVAQNSEG  123 (940)
Q Consensus       110 DsG~YtC~a~n~~g  123 (940)
                      |+|.|.|.+....+
T Consensus        83 Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          83 DSATYLCAVRPTSG   96 (113)
T ss_dssp             GCEEEEEEEEESSS
T ss_pred             CCcEEeEeEecCCC
Confidence            99999999986544

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=2.5e-05  Score=70.15  Aligned_cols=75  Identities=21%  Similarity=0.378  Sum_probs=53.2

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--E---ee---cC------CCCeEEE----eeceEEEEcccccC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--N---SL---DS------DDHVTYE----HDGFVLVLNGVRES  109 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~---~I---~~------~~~~~~~----~~gs~L~I~~v~~~  109 (940)
                      +...|..+.+.+|++|+|.|.....+...+.||+..  .   .|   ..      ..++...    .....|.|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            455678889999999999999877666789999732  1   00   00      1122221    12345899999999


Q ss_pred             CCeEEEEEEEeCC
Q psy11143        110 DAGVYNCVAQNSE  122 (940)
Q Consensus       110 DsG~YtC~a~n~~  122 (940)
                      |+|.|.|.+....
T Consensus        83 Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          83 DSASYICVVSDRG   95 (114)
T ss_dssp             GCSEEEEEEECSC
T ss_pred             hCcccceeeecCC
Confidence            9999999998753

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.76  E-value=4.7e-05  Score=67.52  Aligned_cols=73  Identities=21%  Similarity=0.437  Sum_probs=51.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Eee------------cCCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NSL------------DSDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~I------------~~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++|+|.|.........+.|||..  +..            ....++...  .....|.|.+++.+|+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            345677889999999999999865555579999732  110            011233333  2234699999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1j1pl_          84 GMYFCQQAN   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEcCC
Confidence            999997654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2.5e-05  Score=71.08  Aligned_cols=75  Identities=20%  Similarity=0.384  Sum_probs=54.1

Q ss_pred             CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe------e----cCCC------------CeEEE-e--ec
Q psy11143         46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS------L----DSDD------------HVTYE-H--DG   98 (940)
Q Consensus        46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~------I----~~~~------------~~~~~-~--~g   98 (940)
                      |.+...|..+.+.+|++|+|.|.+.+.....+.|||.  |..      +    ....            ++... .  +.
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~   81 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK   81 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence            6677888999999999999999998777778999972  221      1    0000            11111 1  12


Q ss_pred             eEEEEcccccCCCeEEEEEEEe
Q psy11143         99 FVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        99 s~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      ..|+|.+++.+|+|.|.|.+..
T Consensus        82 ~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          82 YVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEcccccCCCEEEEeeEeC
Confidence            4689999999999999998864

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=5e-05  Score=67.19  Aligned_cols=71  Identities=23%  Similarity=0.468  Sum_probs=49.6

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--C---Eeec---------CCCCeEEEe--eceEEEEcccccCCCe
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--G---NSLD---------SDDHVTYEH--DGFVLVLNGVRESDAG  112 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g---~~I~---------~~~~~~~~~--~gs~L~I~~v~~~DsG  112 (940)
                      ..+|..+.+.+|++|+|.|..++.....+.|||.  |   +.+.         ...++....  +...|.|.+++++|+|
T Consensus         4 ltQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1lk3l1           4 LTQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (106)
T ss_dssp             EECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCC
Confidence            4456678899999999999997655567999973  1   1110         112333332  2356999999999999


Q ss_pred             EEEEEEE
Q psy11143        113 VYNCVAQ  119 (940)
Q Consensus       113 ~YtC~a~  119 (940)
                      .|.|.+.
T Consensus        84 ~YyCa~~   90 (106)
T d1lk3l1          84 IYFCQQS   90 (106)
T ss_dssp             EEEEEEC
T ss_pred             Ccccccc
Confidence            9999754

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=3.9e-05  Score=68.94  Aligned_cols=86  Identities=15%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeec----cCCCeEEEEECC--E----ee---------c-C----CCCeEEEe----ece
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEG----HPLPQMTWFHDG--N----SL---------D-S----DDHVTYEH----DGF   99 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g----~P~p~V~W~kdg--~----~I---------~-~----~~~~~~~~----~gs   99 (940)
                      +...|..+.+..|++|+|.|....    .....|.|++..  .    .+         . .    ..+..+..    ...
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            345677888999999999999753    223489998621  1    01         0 0    11233321    123


Q ss_pred             EEEEcccccCCCeEEEEEEEeCCCce--EEEEEEEE
Q psy11143        100 VLVLNGVRESDAGVYNCVAQNSEGSA--ESVAMIRI  133 (940)
Q Consensus       100 ~L~I~~v~~~DsG~YtC~a~n~~g~~--~~~~~L~V  133 (940)
                      .|.|.+++.+|+|.|.|.+.+..+..  ...+.|.|
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            58999999999999999998764332  23444544

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.74  E-value=4.7e-05  Score=67.54  Aligned_cols=73  Identities=22%  Similarity=0.415  Sum_probs=51.4

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--E---ee-------c--CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--N---SL-------D--SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~---~I-------~--~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      ++..|..+.+.+|++|+|.|.........+.|||..  +   .|       .  ...+....  .....|+|.+++.+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            456688889999999999999876555689999731  1   11       0  11223332  2234599999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+..
T Consensus        84 A~YyCa~~~   92 (107)
T d1tjgl1          84 ATYYCQQLH   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             ceEEEEECc
Confidence            999997654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.73  E-value=0.00011  Score=65.45  Aligned_cols=73  Identities=22%  Similarity=0.343  Sum_probs=50.8

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e---cC------CCCeEEE----eeceEEEEcccccC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L---DS------DDHVTYE----HDGFVLVLNGVRES  109 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I---~~------~~~~~~~----~~gs~L~I~~v~~~  109 (940)
                      +...|..+.+.+|++|+|.|...+.....+.||+.  |+.   +   ..      ..+....    .....|.|.+++.+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            44567788899999999999987655567889973  211   1   00      1122222    22346899999999


Q ss_pred             CCeEEEEEEEe
Q psy11143        110 DAGVYNCVAQN  120 (940)
Q Consensus       110 DsG~YtC~a~n  120 (940)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998864

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.72  E-value=6e-05  Score=67.41  Aligned_cols=75  Identities=24%  Similarity=0.435  Sum_probs=53.0

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeec--cCCCeEEEEEC------CEeecCCCCeEEE----eeceEEEEcccccCCCeEEE
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHD------GNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kd------g~~I~~~~~~~~~----~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      +...|..+++.+|++|+|.|...+  .....+.|||.      ...+....++...    .....|.|.+++.+|+|.|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            456678888999999999999854  34567999982      1233333333333    12246899999999999999


Q ss_pred             EEEEeCC
Q psy11143        116 CVAQNSE  122 (940)
Q Consensus       116 C~a~n~~  122 (940)
                      |.+....
T Consensus        82 CA~~~~~   88 (112)
T d1sq2n_          82 CGLGVAG   88 (112)
T ss_dssp             EEECBTT
T ss_pred             EEEecCC
Confidence            9886543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.72  E-value=6.7e-05  Score=66.40  Aligned_cols=73  Identities=22%  Similarity=0.405  Sum_probs=51.5

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC-----Eee-------c--CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG-----NSL-------D--SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg-----~~I-------~--~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      ++..|..+.+.+|++|+|.|...+.....+.||+..     +.+       .  ...++...  .....|.|.+++++|+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            345688899999999999999876555578999742     111       0  11233333  2334599999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.71  E-value=5.1e-05  Score=68.19  Aligned_cols=74  Identities=24%  Similarity=0.365  Sum_probs=49.8

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---ec---CC-------CCeEEE----eeceEEEEccccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---LD---SD-------DHVTYE----HDGFVLVLNGVRE  108 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I~---~~-------~~~~~~----~~gs~L~I~~v~~  108 (940)
                      +...|..+.+.+|++|+|.|.........+.|||.  |+.   +-   ..       ...+..    .+...|.|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            34456678899999999999987655667889972  211   10   00       011111    1223589999999


Q ss_pred             CCCeEEEEEEEeC
Q psy11143        109 SDAGVYNCVAQNS  121 (940)
Q Consensus       109 ~DsG~YtC~a~n~  121 (940)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          83 SDSAVYFCAVSGF   95 (115)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             cccceecccccCC
Confidence            9999999987643

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=0.0001  Score=66.06  Aligned_cols=85  Identities=19%  Similarity=0.282  Sum_probs=55.0

Q ss_pred             EEcCCceeecCCCeEEEEEeecCc----CCCeEEEEeC--Ce----ee---------c-c----CCcEEEee-----ece
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGE----PLPRISWSKD--EA----EF---------V-E----DRNHKIHR-----TGS  376 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~----P~p~i~W~k~--g~----~i---------~-~----~~~~~i~~-----~~s  376 (940)
                      +..|..+.+..|++|+|.|.....    ....+.|++.  +.    .+         . .    .+|..+..     +.+
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            445677889999999999986522    2338999862  11    11         0 0    12334322     247


Q ss_pred             EEEecCCCCCCeEEEEEEEeCCe--eEEEEEEEEEe
Q psy11143        377 LRLYNIGPQDSGLYRCTASNLLG--EDVAEGYLTVT  410 (940)
Q Consensus       377 L~I~~v~~~D~G~YtC~A~N~~G--~~~~s~~L~V~  410 (940)
                      |.|.+++.+|+|.|.|.+.+..+  .....+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999999998543  33445666664

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.70  E-value=2.5e-05  Score=68.85  Aligned_cols=71  Identities=27%  Similarity=0.506  Sum_probs=48.5

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---ec---------CCCCeEEE--eeceEEEEcccccCCCeEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---LD---------SDDHVTYE--HDGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I~---------~~~~~~~~--~~gs~L~I~~v~~~DsG~Y  114 (940)
                      +|..+++.+|++|+|.|.........+.|||.  |..   +.         ...+....  .+...|.|.+++.+|+|.|
T Consensus         4 Qp~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence            45578899999999999986544457899973  111   00         01122222  2335689999999999999


Q ss_pred             EEEEEeC
Q psy11143        115 NCVAQNS  121 (940)
Q Consensus       115 tC~a~n~  121 (940)
                      .|.+...
T Consensus        84 yCA~~~~   90 (103)
T d8faba1          84 YCQAWDN   90 (103)
T ss_dssp             EEEEEET
T ss_pred             EeeecCC
Confidence            9987643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.69  E-value=7.9e-05  Score=66.12  Aligned_cols=74  Identities=22%  Similarity=0.433  Sum_probs=50.9

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CE---ee-------c--CCCCeEEEe--eceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GN---SL-------D--SDDHVTYEH--DGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~---~I-------~--~~~~~~~~~--~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+++.+|++|+|.|..++.....+.||+.  ++   .+       .  .........  ....|.|.+++.+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            34557788899999999999987655557999973  11   00       0  111222222  224589999999999


Q ss_pred             eEEEEEEEeC
Q psy11143        112 GVYNCVAQNS  121 (940)
Q Consensus       112 G~YtC~a~n~  121 (940)
                      |.|.|.+.+.
T Consensus        84 a~YyCA~~~~   93 (108)
T d1jhll_          84 AMYICQQHNE   93 (108)
T ss_dssp             SEEEEEECSS
T ss_pred             eEEEEeeCCC
Confidence            9999976543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=5.1e-05  Score=69.00  Aligned_cols=75  Identities=25%  Similarity=0.422  Sum_probs=55.3

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee------ec----------------cCCcEEEeee---
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE------FV----------------EDRNHKIHRT---  374 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~------i~----------------~~~~~~i~~~---  374 (940)
                      +|.+...|..+.+.+|++|+|.|.+.+...+.+.|++-  |..      +.                ...++.....   
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            47788888899999999999999998888888999871  111      10                0113332221   


Q ss_pred             -ceEEEecCCCCCCeEEEEEEEe
Q psy11143        375 -GSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       375 -~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                       .+|+|.+++.+|+|.|.|.+.-
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence             2699999999999999998753

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.69  E-value=8.8e-05  Score=66.39  Aligned_cols=74  Identities=27%  Similarity=0.506  Sum_probs=52.6

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeecc--CCCeEEEEEC--CE----eecCCCCeEEEe----eceEEEEcccccCCCeEEE
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHD--GN----SLDSDDHVTYEH----DGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kd--g~----~I~~~~~~~~~~----~gs~L~I~~v~~~DsG~Yt  115 (940)
                      +...|..+.+.+|++|+|+|.+++.  +...+.|||.  +.    .+....+.....    ....|+|.+++.+|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            4566788899999999999998753  4457899973  22    222333333331    1245899999999999999


Q ss_pred             EEEEeC
Q psy11143        116 CVAQNS  121 (940)
Q Consensus       116 C~a~n~  121 (940)
                      |.+...
T Consensus        83 Ca~~~~   88 (113)
T d1vesa_          83 CQAFYS   88 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeecc
Confidence            998653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.69  E-value=4.5e-05  Score=68.40  Aligned_cols=73  Identities=18%  Similarity=0.335  Sum_probs=52.6

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCC--e---ee---------ccCCcEEEee-----eceEEEecCCCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--A---EF---------VEDRNHKIHR-----TGSLRLYNIGPQ  385 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g--~---~i---------~~~~~~~i~~-----~~sL~I~~v~~~  385 (940)
                      +...|..+.+.+|++|+|.|.....+...+.|++-.  .   .+         ....++....     ..+|.|.++..+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            344566788899999999999887777799999722  1   11         1112333321     236999999999


Q ss_pred             CCeEEEEEEEeC
Q psy11143        386 DSGLYRCTASNL  397 (940)
Q Consensus       386 D~G~YtC~A~N~  397 (940)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          83 DSASYICVVSDR   94 (114)
T ss_dssp             GCSEEEEEEECS
T ss_pred             hCcccceeeecC
Confidence            999999999874

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.68  E-value=4.4e-05  Score=67.89  Aligned_cols=73  Identities=26%  Similarity=0.442  Sum_probs=50.1

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e---cC------CCCeEEE----eeceEEEEcccccCC
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L---DS------DDHVTYE----HDGFVLVLNGVRESD  110 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I---~~------~~~~~~~----~~gs~L~I~~v~~~D  110 (940)
                      ...|..+.+.+|++|+|.|.........+.|||.  |..   +   ..      ..+.+..    .+...|.|.+++.+|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            4557788899999999999986544457899973  211   0   00      1122222    223458999999999


Q ss_pred             CeEEEEEEEeC
Q psy11143        111 AGVYNCVAQNS  121 (940)
Q Consensus       111 sG~YtC~a~n~  121 (940)
                      +|.|.|.+...
T Consensus        83 sa~YyCa~~~~   93 (110)
T d1u3ha1          83 SATYFCAASAN   93 (110)
T ss_dssp             CSEEEECCEES
T ss_pred             ceeEeeeecCC
Confidence            99999988644

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.68  E-value=7e-05  Score=66.37  Aligned_cols=73  Identities=27%  Similarity=0.427  Sum_probs=50.4

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---ec---------CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---LD---------SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I~---------~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      ++..|..+.+.+|++|+|.|.........+.|||.  |+.   |.         ...++...  .+...|.|.+++++|+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            34566778899999999999986554557999973  111   10         11233333  2234589999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      +.|.|.+..
T Consensus        84 A~YyCa~~~   92 (107)
T d1mexl1          84 AEYFCQQYN   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eeEEEeECC
Confidence            999998653

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.68  E-value=6.9e-05  Score=66.31  Aligned_cols=72  Identities=21%  Similarity=0.361  Sum_probs=51.7

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce-e-e-c---------cCCcEEEeee---ceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA-E-F-V---------EDRNHKIHRT---GSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~-~-i-~---------~~~~~~i~~~---~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++-  |. . + .         ...++....+   .+|.|.++..+|+|
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA   83 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIA   83 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCE
Confidence            3456677889999999999987766668999972  11 1 1 0         1234444333   36999999999999


Q ss_pred             EEEEEEEeC
Q psy11143        389 LYRCTASNL  397 (940)
Q Consensus       389 ~YtC~A~N~  397 (940)
                      .|.|.+.+.
T Consensus        84 ~YyCa~~~~   92 (106)
T d1a0ql1          84 TYYCLQYYN   92 (106)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEEeCC
Confidence            999987653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.66  E-value=4.6e-05  Score=68.46  Aligned_cols=75  Identities=23%  Similarity=0.315  Sum_probs=52.0

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CE---ee---cC-------CCCeEEE----eeceEEEEccccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GN---SL---DS-------DDHVTYE----HDGFVLVLNGVRE  108 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~---~I---~~-------~~~~~~~----~~gs~L~I~~v~~  108 (940)
                      +...|..+.+.+|++|+|+|.........+.|||.  |+   .|   ..       ..+....    .....|.|.+++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            45567788999999999999987655568999973  21   11   00       1122222    1123489999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy11143        109 SDAGVYNCVAQNSE  122 (940)
Q Consensus       109 ~DsG~YtC~a~n~~  122 (940)
                      +|+|.|.|.+....
T Consensus        83 ~Dsa~YyCa~~~~~   96 (115)
T d1j8hd1          83 SDAAEYFCAVSESP   96 (115)
T ss_dssp             GGCEEEEEEEESST
T ss_pred             cCCccceeeecCCC
Confidence            99999999997643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.66  E-value=7.3e-05  Score=67.06  Aligned_cols=72  Identities=22%  Similarity=0.406  Sum_probs=50.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeec-cCCCeEEEEEC-----CEee------cC-----------CCCeEEE----eeceEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHD-----GNSL------DS-----------DDHVTYE----HDGFVL  101 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kd-----g~~I------~~-----------~~~~~~~----~~gs~L  101 (940)
                      ...|..+.+.+|++|+|.|.+.+ .....+.|||.     ++.+      ..           ..+....    .....|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            45678889999999999999876 34557999973     2211      00           1122222    123458


Q ss_pred             EEcccccCCCeEEEEEEEe
Q psy11143        102 VLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus       102 ~I~~v~~~DsG~YtC~a~n  120 (940)
                      .|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998753

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.8e-05  Score=66.67  Aligned_cols=67  Identities=18%  Similarity=0.379  Sum_probs=46.2

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEECCEee--cC----------C--CCeEEE----e-eceEEEEcccccCCCeEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DS----------D--DHVTYE----H-DGFVLVLNGVRESDAGVY  114 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I--~~----------~--~~~~~~----~-~gs~L~I~~v~~~DsG~Y  114 (940)
                      .+...+|++|+|.|..+......+.|++.....  ..          .  .+....    . ....|+|.+++.+|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            355689999999999877667789999854321  00          0  011111    1 123489999999999999


Q ss_pred             EEEEEe
Q psy11143        115 NCVAQN  120 (940)
Q Consensus       115 tC~a~n  120 (940)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999954

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.64  E-value=9.3e-05  Score=65.86  Aligned_cols=72  Identities=17%  Similarity=0.383  Sum_probs=48.3

Q ss_pred             CCCcEEEecCCeEEEEEEeecc-CCCeEEEEEC--CEe---e-c------CCCCeEEE----eeceEEEEcccccCCCeE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHD--GNS---L-D------SDDHVTYE----HDGFVLVLNGVRESDAGV  113 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kd--g~~---I-~------~~~~~~~~----~~gs~L~I~~v~~~DsG~  113 (940)
                      +|..+.+.+|++|+|.|..++. ....+.|||.  |+.   | .      .....++.    .....|.|.+++.+|+|.
T Consensus         4 QP~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           4 QPPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             CCSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence            3567889999999999997543 3446889983  211   1 0      01112222    223458999999999999


Q ss_pred             EEEEEEeCC
Q psy11143        114 YNCVAQNSE  122 (940)
Q Consensus       114 YtC~a~n~~  122 (940)
                      |.|.+....
T Consensus        84 YyCa~~~~~   92 (110)
T d2esvd1          84 YYCIVVRSS   92 (110)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEeCCC
Confidence            999987543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.64  E-value=9e-05  Score=66.07  Aligned_cols=72  Identities=19%  Similarity=0.382  Sum_probs=49.1

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CE---eec---------CCCCeEEE--eeceEEEEcccccCCCe
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GN---SLD---------SDDHVTYE--HDGFVLVLNGVRESDAG  112 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~---~I~---------~~~~~~~~--~~gs~L~I~~v~~~DsG  112 (940)
                      +|..+.+.+|++++|.|..++..  ...+.||+.  +.   .|.         ...++...  .+...|.|.+++.+|+|
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence            45678999999999999986532  346999973  11   110         11223222  22356899999999999


Q ss_pred             EEEEEEEeCC
Q psy11143        113 VYNCVAQNSE  122 (940)
Q Consensus       113 ~YtC~a~n~~  122 (940)
                      .|.|.+....
T Consensus        86 ~YyCA~~~~~   95 (111)
T d1rzfl1          86 DYYCGTWDSS   95 (111)
T ss_dssp             EEEEEEEETT
T ss_pred             ceEEeecCCC
Confidence            9999887543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.63  E-value=0.0001  Score=65.33  Aligned_cols=73  Identities=25%  Similarity=0.504  Sum_probs=50.7

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CE---ee--------c-CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GN---SL--------D-SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~---~I--------~-~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++|+|.|.........+.|||.  +.   .+        . ...++...  .....|.|.+++.+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            34557788899999999999987655567889973  11   11        0 01233323  2234699999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|....
T Consensus        84 a~YyCa~~~   92 (107)
T d1d5il1          84 GIYYCLQYD   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecc
Confidence            999997654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.63  E-value=0.00013  Score=65.45  Aligned_cols=72  Identities=21%  Similarity=0.387  Sum_probs=49.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--E---eec---------CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--N---SLD---------SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~---~I~---------~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      .+|..+.+.+|++|+|.|.+++..  ...+.||+..  .   .+-         ...+....  .+...|.|.+++.+|+
T Consensus         5 tQ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds   84 (114)
T d2rhea_           5 TQPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDE   84 (114)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             ccCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccC
Confidence            345578899999999999987543  4568899742  1   110         01123332  2234589999999999


Q ss_pred             eEEEEEEEeC
Q psy11143        112 GVYNCVAQNS  121 (940)
Q Consensus       112 G~YtC~a~n~  121 (940)
                      +.|.|.+...
T Consensus        85 A~YyCA~~~~   94 (114)
T d2rhea_          85 ADYYCAAWND   94 (114)
T ss_dssp             EEEEEEEEET
T ss_pred             ceEEEeecCC
Confidence            9999998754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.62  E-value=5.4e-05  Score=67.37  Aligned_cols=73  Identities=22%  Similarity=0.397  Sum_probs=49.8

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e-c--------CCCCeEEE--eeceEEEEcccccCCCeE
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L-D--------SDDHVTYE--HDGFVLVLNGVRESDAGV  113 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I-~--------~~~~~~~~--~~gs~L~I~~v~~~DsG~  113 (940)
                      .+|..+.+.+|++|+|.|.........+.|||.  |+.   | .        ...+....  .....|.|.+++.+|+|.
T Consensus         5 tQp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1           5 TQPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEAD   84 (109)
T ss_dssp             BCCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEE
Confidence            455678899999999999976544446899973  211   1 0        11223233  223458999999999999


Q ss_pred             EEEEEEeCC
Q psy11143        114 YNCVAQNSE  122 (940)
Q Consensus       114 YtC~a~n~~  122 (940)
                      |.|.+....
T Consensus        85 YyCA~~~~~   93 (109)
T d1w72l1          85 YYCQVWDSR   93 (109)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEecCCC
Confidence            999987653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.62  E-value=0.00013  Score=65.61  Aligned_cols=76  Identities=22%  Similarity=0.385  Sum_probs=52.4

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeec-cCCCeEEEEEC--CEe---ec------------CCCCeEEEee---c-eEEEEcc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHD--GNS---LD------------SDDHVTYEHD---G-FVLVLNG  105 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kd--g~~---I~------------~~~~~~~~~~---g-s~L~I~~  105 (940)
                      +...|..+.+.+|++|+|.|...+ .....+.|||.  |..   |-            ...++....+   . ..|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            456678889999999999999854 34567999972  211   10            1123333311   1 3589999


Q ss_pred             cccCCCeEEEEEEEeCCC
Q psy11143        106 VRESDAGVYNCVAQNSEG  123 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g  123 (940)
                      ++.+|+|.|.|.+....+
T Consensus        83 ~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             CCGGGCEEEEEEEECTTT
T ss_pred             ccccccccceeeEecCCC
Confidence            999999999998876543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=4.6e-05  Score=68.36  Aligned_cols=85  Identities=19%  Similarity=0.241  Sum_probs=57.7

Q ss_pred             cCCceeecCCCeEEEEEeecCc---CCCeEEEEeCCe-----ee---------ccCCcEEEeee-----ceEEEecCCCC
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGE---PLPRISWSKDEA-----EF---------VEDRNHKIHRT-----GSLRLYNIGPQ  385 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~---P~p~i~W~k~g~-----~i---------~~~~~~~i~~~-----~sL~I~~v~~~  385 (940)
                      .|..+.+.+|++|+|.|.....   ....+.|++...     .+         ....+..+...     .+|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            5667888999999999986532   123678987431     11         01233433322     37999999999


Q ss_pred             CCeEEEEEEEeCCeeEEEEEEEEEecC
Q psy11143        386 DSGLYRCTASNLLGEDVAEGYLTVTGE  412 (940)
Q Consensus       386 D~G~YtC~A~N~~G~~~~s~~L~V~~~  412 (940)
                      |+|.|.|.+..........+.|+|.+.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            999999998765544555678888765

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=0.00011  Score=65.28  Aligned_cols=73  Identities=18%  Similarity=0.404  Sum_probs=50.9

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--E---ee---------cCCCCeEEEe--eceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--N---SL---------DSDDHVTYEH--DGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~---~I---------~~~~~~~~~~--~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++|+|.|...+.....+.||+..  +   .|         ....++....  +...|+|.+++.+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            345577888999999999999876555578999731  1   11         0112333332  224589999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+..
T Consensus        86 a~YyCA~~~   94 (109)
T d1bwwa_          86 ATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEeecC
Confidence            999998754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=65.88  Aligned_cols=75  Identities=19%  Similarity=0.471  Sum_probs=50.9

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe------ecC------CCCeEEE----eeceEEEEcccccC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS------LDS------DDHVTYE----HDGFVLVLNGVRES  109 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~------I~~------~~~~~~~----~~gs~L~I~~v~~~  109 (940)
                      +...|..+.+.+|++|+|.|...+. ...+.|||.  |..      +..      ..+.++.    .....|.|.+++.+
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            3455778899999999999998653 347899973  110      001      1122222    22345899999999


Q ss_pred             CCeEEEEEEEeCCC
Q psy11143        110 DAGVYNCVAQNSEG  123 (940)
Q Consensus       110 DsG~YtC~a~n~~g  123 (940)
                      |+|.|.|.+....+
T Consensus        82 Dsa~YyCa~~~~~~   95 (115)
T d1ogad1          82 DTGLYLCAGAGSQG   95 (115)
T ss_dssp             GCEEEEEEEECTTS
T ss_pred             ceeeEcccccCCCC
Confidence            99999998875443

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00012  Score=65.02  Aligned_cols=68  Identities=16%  Similarity=0.302  Sum_probs=45.1

Q ss_pred             EecCCeEEEEEEeec-cCCC--eEEEEECCEeecCCCCeE------EEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         57 YSTGSTSRITCLVEG-HPLP--QMTWFHDGNSLDSDDHVT------YEHDGFVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        57 V~eGesv~L~C~v~g-~P~p--~V~W~kdg~~I~~~~~~~------~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      +.+|+.++|+|.+.+ +|.+  .|.|++++..+.......      .....+.|.+.....++...|+|+|++..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            779999999999975 6754  799999998764211100      0011234566644444555899999988654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.7e-05  Score=67.64  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=50.7

Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeCCeee--cc------------CCcEEEe------eeceEEEecCCCCCCeEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--VE------------DRNHKIH------RTGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i--~~------------~~~~~i~------~~~sL~I~~v~~~D~G~Yt  391 (940)
                      +...+|++|+|.|.........+.|++.....  ..            ..++...      .+.+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            45678999999999887777799999754311  00            1122211      1236999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEE
Q psy11143        392 CTASNLLGEDVAEGYLTV  409 (940)
Q Consensus       392 C~A~N~~G~~~~s~~L~V  409 (940)
                      |.+.|.    ...+.|.|
T Consensus        84 C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          84 CEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             EEETTE----EEEEEEEE
T ss_pred             EEEecC----CeEEEEEC
Confidence            999763    33445544

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.58  E-value=0.00013  Score=64.59  Aligned_cols=72  Identities=19%  Similarity=0.335  Sum_probs=51.6

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---e---------ccCCcEEEee---eceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---F---------VEDRNHKIHR---TGSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i---------~~~~~~~i~~---~~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  |..   +         ....++....   +.+|.|.+++.+|+|
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence            3456677889999999999988777778999972  221   1         0112333332   337999999999999


Q ss_pred             EEEEEEEeC
Q psy11143        389 LYRCTASNL  397 (940)
Q Consensus       389 ~YtC~A~N~  397 (940)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (107)
T d1c5cl1          85 DYYCLQYAS   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCcC
Confidence            999977653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0002  Score=63.19  Aligned_cols=73  Identities=18%  Similarity=0.271  Sum_probs=48.0

Q ss_pred             CCcEEEecCCeEEEEEEeecc--CCCeEEEEECC--Ee---e---------cCCCCeEEE----eeceEEEEcccccCCC
Q psy11143         52 PVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDG--NS---L---------DSDDHVTYE----HDGFVLVLNGVRESDA  111 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kdg--~~---I---------~~~~~~~~~----~~gs~L~I~~v~~~Ds  111 (940)
                      ++.+.+.+|++|+|.|.....  ....+.|+|..  ..   +         ....+..+.    .....|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            456778999999999987542  23467898732  11   1         011223222    1224589999999999


Q ss_pred             eEEEEEEEeCCCc
Q psy11143        112 GVYNCVAQNSEGS  124 (940)
Q Consensus       112 G~YtC~a~n~~g~  124 (940)
                      |.|.|.+......
T Consensus        83 G~Y~C~v~~~~~~   95 (108)
T d1hkfa_          83 GHYWCRIYRPSDN   95 (108)
T ss_dssp             EEEEEEEECTTTC
T ss_pred             EEEEEEEecCCCC
Confidence            9999998865443

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.57  E-value=0.00015  Score=64.64  Aligned_cols=73  Identities=18%  Similarity=0.419  Sum_probs=49.8

Q ss_pred             CCCcEEEecCCeEEEEEEeecc---CCCeEEEEECC--Ee---e-c--------CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHDG--NS---L-D--------SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~---P~p~V~W~kdg--~~---I-~--------~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      +|..+.+.+|++|+|.|..++.   ....+.|||..  +.   + .        ....+...  .+...|.|.+++.+|+
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   85 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE   85 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence            4778899999999999998653   22358999731  11   1 0        11122222  2345689999999999


Q ss_pred             eEEEEEEEeCCC
Q psy11143        112 GVYNCVAQNSEG  123 (940)
Q Consensus       112 G~YtC~a~n~~g  123 (940)
                      |.|.|.+.+..+
T Consensus        86 a~YyCa~~~~~~   97 (112)
T d1lgva1          86 ADYYCSSYDGSS   97 (112)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEeeecCCC
Confidence            999998875443

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00011  Score=63.78  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=55.7

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+|.+...|.. .|..|++|+|.|.........+.|+|+|......  .........+.|.+++.+|+|+|+|......
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   79 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR   79 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--EcCCCcccEEEEeccccccCcEEEEEEEcCC
Confidence            46788888865 6899999999998643344579999999654322  1112233567999999999999999887543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=6.5e-05  Score=67.35  Aligned_cols=75  Identities=27%  Similarity=0.493  Sum_probs=51.9

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECC--E---e---ec------------CCCCeEEE--eeceEEEE
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG--N---S---LD------------SDDHVTYE--HDGFVLVL  103 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg--~---~---I~------------~~~~~~~~--~~gs~L~I  103 (940)
                      .+...|...++.+|++|+|.|.+.+. ....+.|||..  .   .   +.            ...++...  .+...|.|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            35677888899999999999998653 34568999832  1   0   10            01122222  22345899


Q ss_pred             cccccCCCeEEEEEEEeC
Q psy11143        104 NGVRESDAGVYNCVAQNS  121 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n~  121 (940)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             ccCCCCCCEEEeEeEcCC
Confidence            999999999999998753

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.56  E-value=6.2e-05  Score=66.97  Aligned_cols=73  Identities=27%  Similarity=0.469  Sum_probs=50.9

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CE---ee-c------C--CCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GN---SL-D------S--DDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~---~I-~------~--~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++|+|.|.........+.|||.  ++   .+ .      .  ..++...  .....|.|.+++.+|+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            34567888999999999999987655557999983  11   11 0      0  1122222  2234589999999999


Q ss_pred             eEEEEEEEe
Q psy11143        112 GVYNCVAQN  120 (940)
Q Consensus       112 G~YtC~a~n  120 (940)
                      |.|.|.+..
T Consensus        84 a~YyCA~~~   92 (109)
T d1mqkl_          84 GSYYCQHHY   92 (109)
T ss_dssp             EEEEEEECS
T ss_pred             eeEEEeeeC
Confidence            999998753

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00023  Score=63.65  Aligned_cols=73  Identities=21%  Similarity=0.364  Sum_probs=51.8

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcC-CCeEEEEeC--Ce-e--e----------ccCCcEEEeee-----ceEEEecCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKD--EA-E--F----------VEDRNHKIHRT-----GSLRLYNIG  383 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~--g~-~--i----------~~~~~~~i~~~-----~sL~I~~v~  383 (940)
                      +...|..+.+.+|++|+|.|...+.. ...+.|++.  +. +  +          ..+.++.+...     .+|.|.++.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            34567778899999999999986543 347899972  21 1  1          12345555432     259999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy11143        384 PQDSGLYRCTASNL  397 (940)
Q Consensus       384 ~~D~G~YtC~A~N~  397 (940)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999988754

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.55  E-value=0.00016  Score=63.87  Aligned_cols=72  Identities=17%  Similarity=0.352  Sum_probs=51.7

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---e---------ccCCcEEEeee---ceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---F---------VEDRNHKIHRT---GSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i---------~~~~~~~i~~~---~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  |..   +         ....++.....   .+|.|.+++.+|+|
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence            3456677899999999999987666678999973  211   0         11234544432   37999999999999


Q ss_pred             EEEEEEEeC
Q psy11143        389 LYRCTASNL  397 (940)
Q Consensus       389 ~YtC~A~N~  397 (940)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (107)
T d1j1pl_          85 MYFCQQANS   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEcCCC
Confidence            999977543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.53  E-value=0.00011  Score=65.13  Aligned_cols=73  Identities=21%  Similarity=0.445  Sum_probs=49.7

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEEC--CE---eec---------CCCCeEEE--eeceEEEEcccccCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHD--GN---SLD---------SDDHVTYE--HDGFVLVLNGVRESD  110 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kd--g~---~I~---------~~~~~~~~--~~gs~L~I~~v~~~D  110 (940)
                      +...|..+.+.+|++|+|.|..... ....+.|||.  |.   .|-         ...++...  .+...|.|.+++.+|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED   83 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence            3456788889999999999997543 3346889974  21   110         11223322  223458999999999


Q ss_pred             CeEEEEEEEe
Q psy11143        111 AGVYNCVAQN  120 (940)
Q Consensus       111 sG~YtC~a~n  120 (940)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (108)
T d2fx7l1          84 FAVYYCQQYG   93 (108)
T ss_dssp             CSEEEEEECS
T ss_pred             cEEEeeecCC
Confidence            9999998753

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.53  E-value=0.00014  Score=64.54  Aligned_cols=74  Identities=23%  Similarity=0.382  Sum_probs=51.2

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e---cC------CCCeEEE----eeceEEEEcccccC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L---DS------DDHVTYE----HDGFVLVLNGVRES  109 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I---~~------~~~~~~~----~~gs~L~I~~v~~~  109 (940)
                      +...|..+.+.+|++|+|.|.........+.|||.  |+.   |   ..      ..++...    .....|.|.+++.+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            45667888999999999999986655557999983  211   1   00      1122222    11244899999999


Q ss_pred             CCeEEEEEEEeC
Q psy11143        110 DAGVYNCVAQNS  121 (940)
Q Consensus       110 DsG~YtC~a~n~  121 (940)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999988754

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00024  Score=62.84  Aligned_cols=88  Identities=16%  Similarity=0.189  Sum_probs=55.5

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecC-cCCC--eEEEEeCCeeeccC-------CcEEEeeeceEEEecCCCCCCeEEE
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP--RISWSKDEAEFVED-------RNHKIHRTGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g-~P~p--~i~W~k~g~~i~~~-------~~~~i~~~~sL~I~~v~~~D~G~Yt  391 (940)
                      .|.|....   .+.+|+.++|.|.+.+ .|.+  .|.|++++..+...       ........+.|.+.....++...|+
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~lt   80 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV   80 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEE
Confidence            45555432   4679999999999885 5654  79999998866421       1111122345666655555555799


Q ss_pred             EEEEeCCee-------EEEEEEEEEecC
Q psy11143        392 CTASNLLGE-------DVAEGYLTVTGE  412 (940)
Q Consensus       392 C~A~N~~G~-------~~~s~~L~V~~~  412 (940)
                      |+|+|..+.       ...+..|.|..+
T Consensus        81 C~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          81 CRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEcCcCCccccccccceeEEeEEEeC
Confidence            999998654       233445666543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.52  E-value=0.0002  Score=63.27  Aligned_cols=71  Identities=18%  Similarity=0.303  Sum_probs=51.3

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEee---eceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHR---TGSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~---~~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  +.   .+.         ...++....   ...|.|.++..+|+|
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa   84 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDA   84 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCc
Confidence            3456677889999999999988776678999973  21   110         123444433   236999999999999


Q ss_pred             EEEEEEEe
Q psy11143        389 LYRCTASN  396 (940)
Q Consensus       389 ~YtC~A~N  396 (940)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1kcvl1          85 DYYCGQSY   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99998754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.51  E-value=0.00019  Score=63.89  Aligned_cols=74  Identities=24%  Similarity=0.413  Sum_probs=49.3

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeecc-C---CCeEEEEEC--CEe----ec--------CCCCeEEE--eeceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGH-P---LPQMTWFHD--GNS----LD--------SDDHVTYE--HDGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~-P---~p~V~W~kd--g~~----I~--------~~~~~~~~--~~gs~L~I~~v~  107 (940)
                      +...|..+.+.+|++|+|+|.+++. .   ...+.||+.  |+.    +.        ...++...  .+...|+|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            3456788899999999999987542 1   224889973  211    11        11233333  223458999999


Q ss_pred             cCCCeEEEEEEEeC
Q psy11143        108 ESDAGVYNCVAQNS  121 (940)
Q Consensus       108 ~~DsG~YtC~a~n~  121 (940)
                      .+|++.|.|.+...
T Consensus        84 ~~DsA~YyCa~~~~   97 (111)
T d2gsia1          84 EEDAATYYCSHIRE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             ccCCceEEEEECCC
Confidence            99999999986543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.51  E-value=0.00014  Score=64.36  Aligned_cols=70  Identities=16%  Similarity=0.286  Sum_probs=51.1

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---ee---------ccCCcEEEeee---ceEEEecCCCCCCeE
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EF---------VEDRNHKIHRT---GSLRLYNIGPQDSGL  389 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i---------~~~~~~~i~~~---~sL~I~~v~~~D~G~  389 (940)
                      ..|..+.+.+|++|+|.|...+.....+.|++.  |.   .+         ....++.....   .+|.|.++..+|+|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            346677889999999999988766668999972  11   11         11235555432   379999999999999


Q ss_pred             EEEEEEe
Q psy11143        390 YRCTASN  396 (940)
Q Consensus       390 YtC~A~N  396 (940)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9998754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=8.6e-05  Score=65.26  Aligned_cols=72  Identities=18%  Similarity=0.385  Sum_probs=49.8

Q ss_pred             cEEEecCCeEEEEEEeeccC----CCeEEEEECCEeecC------------CCCeEEEe-eceEEEEcccccCCCeEEEE
Q psy11143         54 STTYSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDS------------DDHVTYEH-DGFVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P----~p~V~W~kdg~~I~~------------~~~~~~~~-~gs~L~I~~v~~~DsG~YtC  116 (940)
                      .++...|++++|.|......    ...+.|.+++..+..            ..+..+.. +...|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            35688999999999875322    237889888765421            11233332 23468999999999999999


Q ss_pred             EEEeCCCce
Q psy11143        117 VAQNSEGSA  125 (940)
Q Consensus       117 ~a~n~~g~~  125 (940)
                      .+.+..+..
T Consensus        83 ~V~~~~~~~   91 (105)
T d1dr9a1          83 VVLKYEKDA   91 (105)
T ss_dssp             EEEECCTTS
T ss_pred             EEEeCCCCC
Confidence            998754443

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.50  E-value=0.00016  Score=64.57  Aligned_cols=75  Identities=23%  Similarity=0.454  Sum_probs=50.3

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEee----cCC------CCeE--EE---eeceEEEEcccccCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL----DSD------DHVT--YE---HDGFVLVLNGVRESD  110 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I----~~~------~~~~--~~---~~gs~L~I~~v~~~D  110 (940)
                      +...|..+.+.+|++|+|.|..++. ...+.|||.  +...    ...      ....  +.   .....|.|.+++.+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            4556788899999999999998653 347899983  1110    000      0000  00   122458999999999


Q ss_pred             CeEEEEEEEeCCC
Q psy11143        111 AGVYNCVAQNSEG  123 (940)
Q Consensus       111 sG~YtC~a~n~~g  123 (940)
                      +|.|.|.+....+
T Consensus        83 sa~YyCa~~~~~~   95 (113)
T d1h5ba_          83 SGTYFCAAEASSG   95 (113)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEecCCCC
Confidence            9999999876543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.49  E-value=0.00015  Score=63.98  Aligned_cols=71  Identities=18%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---e---------ccCCcEEEeee---ceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---F---------VEDRNHKIHRT---GSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i---------~~~~~~~i~~~---~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  |..   +         ....++.....   .+|.|.++..+|+|
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG   84 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCE
Confidence            3456677889999999999987666668999962  221   0         12235554432   36999999999999


Q ss_pred             EEEEEEEe
Q psy11143        389 LYRCTASN  396 (940)
Q Consensus       389 ~YtC~A~N  396 (940)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (106)
T d1i8ka_          85 DYYCLQSF   92 (106)
T ss_dssp             EEEEEECS
T ss_pred             EEeEecCc
Confidence            99997654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.49  E-value=0.00017  Score=64.67  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=51.2

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---ee---------ccCCcEEEee-----eceEEEecCCCCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EF---------VEDRNHKIHR-----TGSLRLYNIGPQDS  387 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i---------~~~~~~~i~~-----~~sL~I~~v~~~D~  387 (940)
                      ..|..+.+.+|++|+|.|.........+.|+|.  +.   .+         ....++.+..     ...|.|.+++.+|+
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDS   85 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGC
T ss_pred             cCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccC
Confidence            445567789999999999988777788999973  21   11         0122333322     22599999999999


Q ss_pred             eEEEEEEEeCC
Q psy11143        388 GLYRCTASNLL  398 (940)
Q Consensus       388 G~YtC~A~N~~  398 (940)
                      |.|.|.+....
T Consensus        86 g~YyCa~~~~~   96 (115)
T d1lp9e1          86 ALYYCALFLAS   96 (115)
T ss_dssp             EEEEEEEEECS
T ss_pred             ccceEEEEcCC
Confidence            99999886643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.49  E-value=0.00018  Score=64.31  Aligned_cols=76  Identities=14%  Similarity=0.334  Sum_probs=50.4

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeec-cCCCeEEEEEC--CEe---e---c-CC------CCeEEE----eeceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHD--GNS---L---D-SD------DHVTYE----HDGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kd--g~~---I---~-~~------~~~~~~----~~gs~L~I~~v~  107 (940)
                      +...|..+.+.+|++|+|.|.... .....+.|||.  +..   +   . ..      .+.++.    .....|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            445577888999999999998754 33446889983  211   1   0 01      112222    112458999999


Q ss_pred             cCCCeEEEEEEEeCCC
Q psy11143        108 ESDAGVYNCVAQNSEG  123 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~g  123 (940)
                      .+|+|.|.|.+....+
T Consensus        83 ~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          83 VVDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGGCEEEEEEEECSBT
T ss_pred             cccCCCceEeCCCCCC
Confidence            9999999998876543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=8.1e-05  Score=65.43  Aligned_cols=68  Identities=16%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             eeecCCCeEEEEEeecCcCC----CeEEEEeCCeeec--c----------CCcEEEee--eceEEEecCCCCCCeEEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPL----PRISWSKDEAEFV--E----------DRNHKIHR--TGSLRLYNIGPQDSGLYRCT  393 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~----p~i~W~k~g~~i~--~----------~~~~~i~~--~~sL~I~~v~~~D~G~YtC~  393 (940)
                      +++..|++|+|.|.......    ..+.|.+++..+.  .          ..+.....  +.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            56789999999998763222    2788888876531  0          12333332  33899999999999999999


Q ss_pred             EEeCCe
Q psy11143        394 ASNLLG  399 (940)
Q Consensus       394 A~N~~G  399 (940)
                      +.+..+
T Consensus        84 V~~~~~   89 (105)
T d1dr9a1          84 VLKYEK   89 (105)
T ss_dssp             EEECCT
T ss_pred             EEeCCC
Confidence            987533

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.48  E-value=4.6e-05  Score=67.61  Aligned_cols=72  Identities=19%  Similarity=0.413  Sum_probs=50.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e-------cC--CCCe--EEEeeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L-------DS--DDHV--TYEHDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I-------~~--~~~~--~~~~~gs~L~I~~v~~~Ds  111 (940)
                      +...|..+.+.+|++|+|.|.........+.|||.  |+.   |       ..  ..++  ....+...|.|.+++.+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            34567788899999999999987665567999973  211   0       00  1112  1122335689999999999


Q ss_pred             eEEEEEEE
Q psy11143        112 GVYNCVAQ  119 (940)
Q Consensus       112 G~YtC~a~  119 (940)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d3cx5k1          84 ATYFCQHH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEeeeC
Confidence            99999764

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=0.00016  Score=64.35  Aligned_cols=70  Identities=20%  Similarity=0.328  Sum_probs=47.3

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCC---eEEEEEC--C-Ee--e-c--------CCCCeEEE--eeceEEEEcccccCCCe
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLP---QMTWFHD--G-NS--L-D--------SDDHVTYE--HDGFVLVLNGVRESDAG  112 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p---~V~W~kd--g-~~--I-~--------~~~~~~~~--~~gs~L~I~~v~~~DsG  112 (940)
                      |..+.+.+|++|+|.|..++....   -+.|||.  | .+  | .        ...++...  .+...|.|.+++.+|+|
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA   86 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE
Confidence            446789999999999998753322   3889972  2 11  1 0        11233333  33356899999999999


Q ss_pred             EEEEEEEeC
Q psy11143        113 VYNCVAQNS  121 (940)
Q Consensus       113 ~YtC~a~n~  121 (940)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (110)
T d1oaql_          87 IYFCALWYS   95 (110)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEcccC
Confidence            999997653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=0.00025  Score=62.56  Aligned_cols=68  Identities=18%  Similarity=0.367  Sum_probs=49.2

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEeee---ceEEEecCCCCCCeEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHRT---GSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~~---~sL~I~~v~~~D~G~Yt  391 (940)
                      |..+.+.+|++|+|.|...+.....+.|++.  +.   .+.         ...++.....   ..|.|.+++.+|+|.|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            4457889999999999998766678999963  11   111         1234554443   37999999999999999


Q ss_pred             EEEEe
Q psy11143        392 CTASN  396 (940)
Q Consensus       392 C~A~N  396 (940)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1lk3l1          87 CQQSW   91 (106)
T ss_dssp             EEECS
T ss_pred             ccccc
Confidence            96543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.47  E-value=0.00015  Score=64.60  Aligned_cols=73  Identities=21%  Similarity=0.451  Sum_probs=49.9

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEee------------cCCCCeEEE----eeceEEEEccccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSL------------DSDDHVTYE----HDGFVLVLNGVRE  108 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~I------------~~~~~~~~~----~~gs~L~I~~v~~  108 (940)
                      ..+|..+++.+|++|+|.|..++..  ..-+.|||.  ++..            ....+....    .+...|.|.+++.
T Consensus         4 ltQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~   83 (111)
T d1cd0a_           4 LNQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT   83 (111)
T ss_dssp             EECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc
Confidence            4457788999999999999986543  234889973  1110            011233333    2234589999999


Q ss_pred             CCCeEEEEEEEeC
Q psy11143        109 SDAGVYNCVAQNS  121 (940)
Q Consensus       109 ~DsG~YtC~a~n~  121 (940)
                      +|+|.|.|.....
T Consensus        84 ~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          84 EDEADYYCQSYDA   96 (111)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCcEEEEeeccC
Confidence            9999999987643

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.46  E-value=0.00016  Score=64.11  Aligned_cols=74  Identities=22%  Similarity=0.452  Sum_probs=50.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e-c--------CCCCeEEE--eeceEEEEcccccCCCe
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L-D--------SDDHVTYE--HDGFVLVLNGVRESDAG  112 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I-~--------~~~~~~~~--~~gs~L~I~~v~~~DsG  112 (940)
                      ..+|..+.+.+|++|+|.|.........+.|||.  |+.   | .        ...++...  .+...|.|.+++.+|+|
T Consensus         3 ltQP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa   82 (108)
T d1nfde1           3 LIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA   82 (108)
T ss_dssp             EECCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred             eECCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCc
Confidence            3457788899999999999875444446889972  211   1 0        01133333  22346899999999999


Q ss_pred             EEEEEEEeCC
Q psy11143        113 VYNCVAQNSE  122 (940)
Q Consensus       113 ~YtC~a~n~~  122 (940)
                      .|.|.+....
T Consensus        83 ~YyCA~~~~~   92 (108)
T d1nfde1          83 AYYCLSSYGD   92 (108)
T ss_dssp             EEEEEEEETT
T ss_pred             eEEEEeecCC
Confidence            9999887543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.45  E-value=0.00014  Score=65.10  Aligned_cols=75  Identities=16%  Similarity=0.344  Sum_probs=50.9

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeec-cCCCeEEEEEC--CEe----ec----C-----CCCeEEEe----eceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHD--GNS----LD----S-----DDHVTYEH----DGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kd--g~~----I~----~-----~~~~~~~~----~gs~L~I~~v~  107 (940)
                      +...|..+.+.+|++|+|.|.... .....+.|||.  |..    +.    .     ..++++..    ....|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            345677889999999999998753 34456889973  111    00    0     11233331    12458999999


Q ss_pred             cCCCeEEEEEEEeCC
Q psy11143        108 ESDAGVYNCVAQNSE  122 (940)
Q Consensus       108 ~~DsG~YtC~a~n~~  122 (940)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             ccccccccceeecCC
Confidence            999999999987543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00012  Score=63.46  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=54.4

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .+|.+...|.. .+..|++|+|.|.......-.+.|+|+|...... ...-.....+.|.+++.+|+|+|+|.....
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~-~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE-EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            56888888864 6899999999998643444589999998643221 111112347999999999999999987643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.00023  Score=62.93  Aligned_cols=72  Identities=17%  Similarity=0.356  Sum_probs=51.2

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---ee---------ccCCcEEEeee---ceEEEecCCCCCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EF---------VEDRNHKIHRT---GSLRLYNIGPQDS  387 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i---------~~~~~~~i~~~---~sL~I~~v~~~D~  387 (940)
                      +...|..+.+.+|++|+|.|.........+.|++.  |.   .+         ....++....+   ..|.|.++..+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            34557778889999999999988665678999873  11   11         01234444332   3699999999999


Q ss_pred             eEEEEEEEe
Q psy11143        388 GLYRCTASN  396 (940)
Q Consensus       388 G~YtC~A~N  396 (940)
                      |.|.|.+.+
T Consensus        84 A~YyCa~~~   92 (107)
T d1tjgl1          84 ATYYCQQLH   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             ceEEEEECc
Confidence            999997654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.44  E-value=0.00024  Score=63.88  Aligned_cols=76  Identities=22%  Similarity=0.434  Sum_probs=53.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e----------c----CCCCeEEEe---eceEEEEcc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L----------D----SDDHVTYEH---DGFVLVLNG  105 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I----------~----~~~~~~~~~---~gs~L~I~~  105 (940)
                      +...|....+.+|++|+|.|...+.....+.|||.  |+.   |          .    ...++....   +...|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            45667788899999999999987666668999983  211   0          0    011233221   124589999


Q ss_pred             cccCCCeEEEEEEEeCCC
Q psy11143        106 VRESDAGVYNCVAQNSEG  123 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g  123 (940)
                      ++.+|+|.|.|.+....+
T Consensus        84 ~~~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAGSG  101 (118)
T ss_dssp             CCGGGCEEEEEEEECSSC
T ss_pred             cccccCceEEEEEecCCC
Confidence            999999999999875443

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.00038  Score=61.34  Aligned_cols=71  Identities=14%  Similarity=0.278  Sum_probs=51.3

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCC--e---ee---------ccCCcEEEeee---ceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--A---EF---------VEDRNHKIHRT---GSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g--~---~i---------~~~~~~~i~~~---~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.....-...+.|++..  .   .+         ....++....+   ..|.|.+++.+|+|
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence            34577788999999999999876666689999731  1   11         01234444332   36999999999999


Q ss_pred             EEEEEEEe
Q psy11143        389 LYRCTASN  396 (940)
Q Consensus       389 ~YtC~A~N  396 (940)
                      .|.|.+..
T Consensus        84 ~YyCa~~~   91 (106)
T d1op3k1          84 TYHCQHYA   91 (106)
T ss_dssp             EEEEEEEC
T ss_pred             cEeeeeCC
Confidence            99998764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.42  E-value=0.00017  Score=64.16  Aligned_cols=73  Identities=22%  Similarity=0.455  Sum_probs=48.6

Q ss_pred             EeCCCcEEEecCCeEEEEEEeecc----CCCeEEEEEC--CEe---e-c--------CCCCeEEE--eeceEEEEccccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGH----PLPQMTWFHD--GNS---L-D--------SDDHVTYE--HDGFVLVLNGVRE  108 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~----P~p~V~W~kd--g~~---I-~--------~~~~~~~~--~~gs~L~I~~v~~  108 (940)
                      ...|..+.+.+|++|+|.|.....    ....+.|||.  |+.   | .        ...+....  .....|.|.+++.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence            455778889999999999987432    2224899973  221   1 0        01122222  2335699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy11143        109 SDAGVYNCVAQNS  121 (940)
Q Consensus       109 ~DsG~YtC~a~n~  121 (940)
                      +|+|.|.|.+.+.
T Consensus        85 ~Dsa~YyCa~~~~   97 (111)
T d1j05a_          85 DDVATYYCQQTNE   97 (111)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             ccCccEEEeecCC
Confidence            9999999987543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.42  E-value=0.00021  Score=63.20  Aligned_cols=70  Identities=17%  Similarity=0.292  Sum_probs=50.1

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEeee---ceEEEecCCCCCCeE
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHRT---GSLRLYNIGPQDSGL  389 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~~---~sL~I~~v~~~D~G~  389 (940)
                      ..|..+.+.+|++|+|.|.....-...+.|++.  |.   .+.         ...++.....   ..|.|.++..+|+++
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~   85 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAE   85 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheeccee
Confidence            445567889999999999987665668999972  21   111         1234554432   369999999999999


Q ss_pred             EEEEEEe
Q psy11143        390 YRCTASN  396 (940)
Q Consensus       390 YtC~A~N  396 (940)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1mexl1          86 YFCQQYN   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeECC
Confidence            9997654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.41  E-value=0.00033  Score=61.94  Aligned_cols=72  Identities=17%  Similarity=0.360  Sum_probs=50.6

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEeee---ceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHRT---GSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~~---~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  +.   .+.         ...++.....   .+|.|.++..+|+|
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   84 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA   84 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred             EccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccce
Confidence            3456677889999999999988766678999872  11   110         1123333332   27999999999999


Q ss_pred             EEEEEEEeC
Q psy11143        389 LYRCTASNL  397 (940)
Q Consensus       389 ~YtC~A~N~  397 (940)
                      .|.|.+.+.
T Consensus        85 ~YyCA~~~~   93 (108)
T d1jhll_          85 MYICQQHNE   93 (108)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEeeCCC
Confidence            999976654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.40  E-value=0.00022  Score=63.67  Aligned_cols=75  Identities=16%  Similarity=0.345  Sum_probs=52.6

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---e---------ccCCcEEEee-----eceEEEecCCCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---F---------VEDRNHKIHR-----TGSLRLYNIGPQ  385 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i---------~~~~~~~i~~-----~~sL~I~~v~~~  385 (940)
                      +...|..+.+.+|++|+|.|...+.....+.|+|-  |..   +         ....++....     ..+|.|.++..+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            34457778889999999999988776668999972  211   1         0112222221     237999999999


Q ss_pred             CCeEEEEEEEeCCe
Q psy11143        386 DSGLYRCTASNLLG  399 (940)
Q Consensus       386 D~G~YtC~A~N~~G  399 (940)
                      |+|.|.|.+....+
T Consensus        83 Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          83 DSATYLCAVRPTSG   96 (113)
T ss_dssp             GCEEEEEEEEESSS
T ss_pred             CCcEEeEeEecCCC
Confidence            99999999976543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.40  E-value=0.0003  Score=62.14  Aligned_cols=72  Identities=22%  Similarity=0.366  Sum_probs=51.6

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEeee---ceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHRT---GSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~~---~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  +.   .+.         ...++.....   .+|.|.++..+|+|
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCE
Confidence            3456677889999999999988776778899863  21   110         1134544432   37999999999999


Q ss_pred             EEEEEEEeC
Q psy11143        389 LYRCTASNL  397 (940)
Q Consensus       389 ~YtC~A~N~  397 (940)
                      .|.|.+...
T Consensus        85 ~YyCa~~~~   93 (107)
T d1d5il1          85 IYYCLQYDE   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEeeeccC
Confidence            999976553

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.37  E-value=0.00032  Score=62.47  Aligned_cols=72  Identities=28%  Similarity=0.499  Sum_probs=47.8

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccC-----CCeEEEEEC--CEe---e-------c--CCCCeEEE--eeceEEEEccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHD--GNS---L-------D--SDDHVTYE--HDGFVLVLNGV  106 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P-----~p~V~W~kd--g~~---I-------~--~~~~~~~~--~~gs~L~I~~v  106 (940)
                      ++..|..+.+.+|++|+|.|.+++..     ..-+.||+.  |+.   |       .  ...++...  .+...|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            34557888999999999999875422     235889873  111   0       0  11233222  22345999999


Q ss_pred             ccCCCeEEEEEEE
Q psy11143        107 RESDAGVYNCVAQ  119 (940)
Q Consensus       107 ~~~DsG~YtC~a~  119 (940)
                      +++|+|.|.|...
T Consensus        84 ~~eDsAvYYC~~~   96 (112)
T d1ncwl1          84 EAEDLGVYYCWQG   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcCEeEEEEcC
Confidence            9999999999553

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.37  E-value=0.00034  Score=62.41  Aligned_cols=73  Identities=25%  Similarity=0.484  Sum_probs=49.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeecc-----CCCeEEEEEC--CEe---e---------cCCCCeEEE--eeceEEEEccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGH-----PLPQMTWFHD--GNS---L---------DSDDHVTYE--HDGFVLVLNGV  106 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~-----P~p~V~W~kd--g~~---I---------~~~~~~~~~--~~gs~L~I~~v  106 (940)
                      ++..|..+.+.+|++|+|.|..++.     ....+.||+.  |+.   +         ....++...  .+...|.|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            4556788899999999999997542     2246899973  111   0         011233322  22346899999


Q ss_pred             ccCCCeEEEEEEEe
Q psy11143        107 RESDAGVYNCVAQN  120 (940)
Q Consensus       107 ~~~DsG~YtC~a~n  120 (940)
                      +.+|+|.|.|...+
T Consensus        85 ~~~DsavYyCa~~~   98 (113)
T d1n4xl_          85 EAEDLGIYYCFQGS   98 (113)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CcccCEEEEEEECC
Confidence            99999999996543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.37  E-value=0.00036  Score=62.37  Aligned_cols=85  Identities=16%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEe--CCe---eec---cC-------CcEEEe--e---eceEEEecCCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK--DEA---EFV---ED-------RNHKIH--R---TGSLRLYNIGPQ  385 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k--~g~---~i~---~~-------~~~~i~--~---~~sL~I~~v~~~  385 (940)
                      ...|..+.+.+|++|+|.|.......+.+.|++  .+.   .+.   ..       .+....  .   ..+|.|.++..+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            334556788999999999998766667889997  221   111   00       111111  1   236999999999


Q ss_pred             CCeEEEEEEEeCCeeEE--EEEEEEEe
Q psy11143        386 DSGLYRCTASNLLGEDV--AEGYLTVT  410 (940)
Q Consensus       386 D~G~YtC~A~N~~G~~~--~s~~L~V~  410 (940)
                      |+|.|.|.+........  ....|+|+
T Consensus        84 Dsg~YyCa~~~~~~~~~FG~GT~L~V~  110 (115)
T d1i9ea_          84 DSAVYFCAVSGFASALTFGSGTKVIVL  110 (115)
T ss_dssp             GCEEEEEEEEETTEEEEECCCEEEEEE
T ss_pred             ccceecccccCCCCCCEECCCEEEEEe
Confidence            99999998775432221  13457766

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=0.00016  Score=65.19  Aligned_cols=70  Identities=19%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEeee---ceEEEecCCCCCCeE
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHRT---GSLRLYNIGPQDSGL  389 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~~---~sL~I~~v~~~D~G~  389 (940)
                      ..|..+.+.+|++|+|.|...+.-...+.|++.  +.   .+.         ...++.....   ..|.|.++..+|+|.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            345667789999999999987665567999973  11   111         1234443332   269999999999999


Q ss_pred             EEEEEEe
Q psy11143        390 YRCTASN  396 (940)
Q Consensus       390 YtC~A~N  396 (940)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00039  Score=61.25  Aligned_cols=70  Identities=16%  Similarity=0.393  Sum_probs=44.1

Q ss_pred             cEEEecCCeEEEEEEeeccCC---CeE--EEEECCEee----------cC------CCCeEEEeeceEEEEcccccCCCe
Q psy11143         54 STTYSTGSTSRITCLVEGHPL---PQM--TWFHDGNSL----------DS------DDHVTYEHDGFVLVLNGVRESDAG  112 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~---p~V--~W~kdg~~I----------~~------~~~~~~~~~gs~L~I~~v~~~DsG  112 (940)
                      .+.+..|++|+|.|..+..+.   ..+  .|.++...+          ..      ..+.........|.|.+++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            356788999999999864321   223  344433211          00      112223334456899999999999


Q ss_pred             EEEEEEEeCCC
Q psy11143        113 VYNCVAQNSEG  123 (940)
Q Consensus       113 ~YtC~a~n~~g  123 (940)
                      .|.|.+.....
T Consensus        83 ~Y~C~V~~~~~   93 (110)
T d1ncna_          83 LYQCIIHHKKP   93 (110)
T ss_dssp             EEEEEEEEECS
T ss_pred             EEEEEEEecCC
Confidence            99999975543

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00017  Score=62.12  Aligned_cols=72  Identities=17%  Similarity=0.315  Sum_probs=51.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .+|.+...|.. .|..|++|+|.|.... +...+.|+|+|......  .........+.|.+|+.+|+|.|+|...
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~--~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE--EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCCC-CCCEEEEEECCCcccee--ecCCCceeEEEecccChhcCceEEEEeE
Confidence            46778787765 4889999999999743 45589999988643211  0111233457999999999999999754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00016  Score=63.14  Aligned_cols=81  Identities=15%  Similarity=0.328  Sum_probs=50.6

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeecc-CC-CeEEEEECCEeecCCC--CeEEEeeceE--EEEcccccCCCeEEEE
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDD--HVTYEHDGFV--LVLNGVRESDAGVYNC  116 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~--~~~~~~~gs~--L~I~~v~~~DsG~YtC  116 (940)
                      ..+|.+.+.+.. .+..|+.++|.|.+.|. |. ..|+|++||..+....  ......+|+.  .....+..+|.+.|+|
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            345655443221 23578999999999994 44 4899999999885422  1222244432  2223345667789999


Q ss_pred             EEEeCCCc
Q psy11143        117 VAQNSEGS  124 (940)
Q Consensus       117 ~a~n~~g~  124 (940)
                      ++.+....
T Consensus        82 ~V~H~sl~   89 (100)
T d1k5nb_          82 RVNHVTLS   89 (100)
T ss_dssp             EEECTTCS
T ss_pred             EEEeCCCC
Confidence            99986543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.00033  Score=61.91  Aligned_cols=73  Identities=23%  Similarity=0.348  Sum_probs=47.6

Q ss_pred             CCCcEEEecCCeEEEEEEeec---cC---CCeEEEEECCE----ee---------c--CCCCeEEE----eeceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEG---HP---LPQMTWFHDGN----SL---------D--SDDHVTYE----HDGFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g---~P---~p~V~W~kdg~----~I---------~--~~~~~~~~----~~gs~L~I~~  105 (940)
                      .|..+.+.+|+.|+|.|....   .+   ...+.|++...    .+         .  ...+..+.    .....|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            466788999999999999852   11   22566777421    11         0  11233333    1223489999


Q ss_pred             cccCCCeEEEEEEEeCCC
Q psy11143        106 VRESDAGVYNCVAQNSEG  123 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g  123 (940)
                      ++.+|+|.|.|.+....+
T Consensus        86 v~~~DsG~Y~C~v~~~~~  103 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISDS  103 (118)
T ss_dssp             CCGGGCEEEEEEEECC-C
T ss_pred             CChhHCEEEEEEEEeCCC
Confidence            999999999999976543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.35  E-value=0.00028  Score=60.71  Aligned_cols=62  Identities=18%  Similarity=0.406  Sum_probs=42.5

Q ss_pred             CCeEEEEEEeeccCCCeEEEEECC--Ee---e---c-----CCCCeEEE----eeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         60 GSTSRITCLVEGHPLPQMTWFHDG--NS---L---D-----SDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        60 Gesv~L~C~v~g~P~p~V~W~kdg--~~---I---~-----~~~~~~~~----~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      |++|+|.|.........+.|||..  ..   |   .     ...++...    .....|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            789999999877666789999721  10   1   1     01122222    11245899999999999999998754

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.35  E-value=0.0004  Score=61.84  Aligned_cols=70  Identities=27%  Similarity=0.480  Sum_probs=47.0

Q ss_pred             EeCCCcEEEecCCeEEEEEEeecc-----CCCeEEEEEC--CEe----ec------C--CCCeEEE--eeceEEEEcccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGH-----PLPQMTWFHD--GNS----LD------S--DDHVTYE--HDGFVLVLNGVR  107 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~-----P~p~V~W~kd--g~~----I~------~--~~~~~~~--~~gs~L~I~~v~  107 (940)
                      +..|..+.+.+|++|+|.|.+++.     ....+.||+.  |+.    +.      .  ..++...  .....|.|.+++
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~   84 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE   84 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc
Confidence            455778889999999999997652     2346899873  111    10      1  1122222  223458999999


Q ss_pred             cCCCeEEEEEE
Q psy11143        108 ESDAGVYNCVA  118 (940)
Q Consensus       108 ~~DsG~YtC~a  118 (940)
                      .+|++.|.|..
T Consensus        85 ~~DsAvYyCa~   95 (112)
T d1mjul1          85 AEDVGVYYCLQ   95 (112)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccCCceEEEEe
Confidence            99999999954

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00034  Score=60.82  Aligned_cols=79  Identities=13%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeecc-CC-CeEEEEECCEeecCCCCeEEE--eeceE--EEEcccccCCCeEEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDHVTYE--HDGFV--LVLNGVRESDAGVYNCV  117 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~~~~~--~~gs~--L~I~~v~~~DsG~YtC~  117 (940)
                      .+|.+.+.+... +..|+.++|.|.+.|. |. ..|+|++||..+.........  .+++.  .....+..++.+.|+|.
T Consensus         3 ~~P~V~v~~~~~-~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (99)
T d1lk2b_           3 KTPQIQVYSRHP-PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR   81 (99)
T ss_dssp             BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCEEEEEcCCC-ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEE
Confidence            455554432221 3468889999999984 43 489999999988643322221  23321  22223455677899999


Q ss_pred             EEeCCC
Q psy11143        118 AQNSEG  123 (940)
Q Consensus       118 a~n~~g  123 (940)
                      +.+..-
T Consensus        82 V~H~sl   87 (99)
T d1lk2b_          82 VKHDSM   87 (99)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            998654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.34  E-value=0.00048  Score=61.65  Aligned_cols=75  Identities=17%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCc-CCCeEEEEe--CCe-e--ec------------cCCcEEEeee-----ceEEEec
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSK--DEA-E--FV------------EDRNHKIHRT-----GSLRLYN  381 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k--~g~-~--i~------------~~~~~~i~~~-----~sL~I~~  381 (940)
                      +...|..+.+.+|++|+|.|..... ....+.|++  .+. +  +.            ...++.+..+     .+|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3445667788999999999987543 456899986  221 1  10            1235554332     2699999


Q ss_pred             CCCCCCeEEEEEEEeCCe
Q psy11143        382 IGPQDSGLYRCTASNLLG  399 (940)
Q Consensus       382 v~~~D~G~YtC~A~N~~G  399 (940)
                      ++.+|+|.|.|.+....+
T Consensus        83 ~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             CCGGGCEEEEEEEECTTT
T ss_pred             ccccccccceeeEecCCC
Confidence            999999999998876543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=8e-05  Score=64.61  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=51.8

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC-CeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +|.+...|.. .|..|++|+|.|... .+...+.++|+|....... ......+...+.|.+|+.+|+|.|+|....
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            5777777774 478999999999964 3455788899886432100 000012334679999999999999998754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.33  E-value=0.00046  Score=61.45  Aligned_cols=72  Identities=21%  Similarity=0.339  Sum_probs=51.5

Q ss_pred             EEcCCceeecCCCeEEEEEeecCc--CCCeEEEEeC--C----eeeccCCcEEEee-----eceEEEecCCCCCCeEEEE
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGE--PLPRISWSKD--E----AEFVEDRNHKIHR-----TGSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~--P~p~i~W~k~--g----~~i~~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC  392 (940)
                      ...|..+.+.+|++|+|.|...+.  ....+.|++.  |    ..+..+.++....     ..+|+|.++..+|+|.|.|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            445667788999999999987643  4468999972  1    2233344554432     2279999999999999999


Q ss_pred             EEEeC
Q psy11143        393 TASNL  397 (940)
Q Consensus       393 ~A~N~  397 (940)
                      .+...
T Consensus        83 A~~~~   87 (112)
T d1sq2n_          83 GLGVA   87 (112)
T ss_dssp             EECBT
T ss_pred             EEecC
Confidence            87643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.32  E-value=0.00015  Score=64.79  Aligned_cols=72  Identities=26%  Similarity=0.500  Sum_probs=48.0

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeecc---C---CCeEEEEEC--CEe---e---------cCCCCeEEE--eeceEEEEcc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGH---P---LPQMTWFHD--GNS---L---------DSDDHVTYE--HDGFVLVLNG  105 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~---P---~p~V~W~kd--g~~---I---------~~~~~~~~~--~~gs~L~I~~  105 (940)
                      +...|..+.+.+|++|+|.|.+++.   .   ...+.|||.  |+.   +         .........  .....|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            3455788899999999999987542   1   124899983  211   0         011222222  2234599999


Q ss_pred             cccCCCeEEEEEEE
Q psy11143        106 VRESDAGVYNCVAQ  119 (940)
Q Consensus       106 v~~~DsG~YtC~a~  119 (940)
                      ++++|+|.|.|.+.
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999864

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.31  E-value=0.00059  Score=60.37  Aligned_cols=72  Identities=22%  Similarity=0.431  Sum_probs=49.3

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe----e--c---------CCCCeEEE---eeceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS----L--D---------SDDHVTYE---HDGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~----I--~---------~~~~~~~~---~~gs~L~I~~v~  107 (940)
                      +...|....+.+|++|+|.|..++ ....+.|||.  |+.    +  .         ........   .....|.|.+++
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            456678888999999999998764 3457999982  211    0  0         00111111   223458999999


Q ss_pred             cCCCeEEEEEEEe
Q psy11143        108 ESDAGVYNCVAQN  120 (940)
Q Consensus       108 ~~DsG~YtC~a~n  120 (940)
                      .+|+|.|.|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999998764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.31  E-value=0.00061  Score=60.65  Aligned_cols=71  Identities=23%  Similarity=0.326  Sum_probs=51.4

Q ss_pred             EEcCCceeecCCCeEEEEEeecCc--CCCeEEEEeC--Ce----eeccCCcEEEeee-----ceEEEecCCCCCCeEEEE
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGE--PLPRISWSKD--EA----EFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~--P~p~i~W~k~--g~----~i~~~~~~~i~~~-----~sL~I~~v~~~D~G~YtC  392 (940)
                      ...|..+.+.+|++|+|.|...+.  +...+.|++.  +.    .+....++....+     .+|+|.+++.+|+|.|.|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEee
Confidence            445777888999999999998653  4457999962  22    2233445544432     269999999999999999


Q ss_pred             EEEe
Q psy11143        393 TASN  396 (940)
Q Consensus       393 ~A~N  396 (940)
                      .+..
T Consensus        84 a~~~   87 (113)
T d1vesa_          84 QAFY   87 (113)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            9864

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.31  E-value=0.00047  Score=61.16  Aligned_cols=72  Identities=19%  Similarity=0.368  Sum_probs=48.6

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe------------e--cC--CCCeEEEe---eceEEEEcccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS------------L--DS--DDHVTYEH---DGFVLVLNGVR  107 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~------------I--~~--~~~~~~~~---~gs~L~I~~v~  107 (940)
                      ...|..+.+.+|++|+|.|...+. ...+.|||.  |+.            .  ..  ..++....   ....|+|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             EECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            455778889999999999986542 347899973  211            1  00  11222221   22468999999


Q ss_pred             cCCCeEEEEEEEeC
Q psy11143        108 ESDAGVYNCVAQNS  121 (940)
Q Consensus       108 ~~DsG~YtC~a~n~  121 (940)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (111)
T d2esve1          82 LEDSGVYFCASSQD   95 (111)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             cCCCceEEEeeeCC
Confidence            99999999987643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.00031  Score=61.60  Aligned_cols=71  Identities=18%  Similarity=0.381  Sum_probs=48.1

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--E---ee-------c--CCCCeEEE--eeceEEEEcccccCCC
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--N---SL-------D--SDDHVTYE--HDGFVLVLNGVRESDA  111 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~---~I-------~--~~~~~~~~--~~gs~L~I~~v~~~Ds  111 (940)
                      ++..|..+.+.+|++|+|.|..+.. ...+.||+..  .   .+       .  ....+...  .....|.|.+++.+|+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            3456788899999999999987543 3357899732  1   00       0  11222222  2234589999999999


Q ss_pred             eEEEEEEE
Q psy11143        112 GVYNCVAQ  119 (940)
Q Consensus       112 G~YtC~a~  119 (940)
                      |.|.|.+.
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999764

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00029  Score=63.36  Aligned_cols=71  Identities=23%  Similarity=0.317  Sum_probs=47.3

Q ss_pred             CCCcEEEecCCeEEEEEEeecc-------CCCeEEEEECCEeec---------------C--CCCeEEEe----eceEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGH-------PLPQMTWFHDGNSLD---------------S--DDHVTYEH----DGFVLV  102 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~-------P~p~V~W~kdg~~I~---------------~--~~~~~~~~----~gs~L~  102 (940)
                      .|..++|.+|+.|+|.|..+..       ....+.|++....-.               .  ..+..+..    ....|.
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            3567889999999999998521       113678988632110               0  11334331    223589


Q ss_pred             EcccccCCCeEEEEEEEeC
Q psy11143        103 LNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~n~  121 (940)
                      |.+++.+|+|.|.|.+...
T Consensus        87 I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ECCCChHHCEEEEEEEEeC
Confidence            9999999999999999754

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.29  E-value=0.00055  Score=61.67  Aligned_cols=74  Identities=20%  Similarity=0.429  Sum_probs=51.5

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEe---e-------c--CCCCeEEEe----eceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNS---L-------D--SDDHVTYEH----DGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~---I-------~--~~~~~~~~~----~gs~L~I~~v~  107 (940)
                      +..++..+.+.+|++++|.|.+++..  ...+.|||.  |+.   |       .  ...++....    +...|.|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            45667788899999999999987543  346899972  211   1       0  112333331    23569999999


Q ss_pred             cCCCeEEEEEEEeC
Q psy11143        108 ESDAGVYNCVAQNS  121 (940)
Q Consensus       108 ~~DsG~YtC~a~n~  121 (940)
                      .+|+|.|.|.....
T Consensus        84 ~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          84 ERDEGSYYCACDTL   97 (120)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccCCceeecCcccC
Confidence            99999999987653

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.28  E-value=0.00066  Score=60.43  Aligned_cols=73  Identities=15%  Similarity=0.379  Sum_probs=48.5

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEe---e---cC---------CCCeEEE---eeceEEEEccccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNS---L---DS---------DDHVTYE---HDGFVLVLNGVRE  108 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~---I---~~---------~~~~~~~---~~gs~L~I~~v~~  108 (940)
                      ...|..+.+.+|++|+|.|..+. ....+.|||.  |+.   +   ..         .......   .+...|.|.+++.
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            44577788999999999999753 3457999973  211   0   00         0111111   1123489999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy11143        109 SDAGVYNCVAQNSE  122 (940)
Q Consensus       109 ~DsG~YtC~a~n~~  122 (940)
                      +|+|.|.|.+....
T Consensus        82 ~DSa~YyCa~~~~~   95 (114)
T d1ogae1          82 NPTAFYLCASSSRS   95 (114)
T ss_dssp             CCCEEEEEEEESST
T ss_pred             CCceeEEEeeccCC
Confidence            99999999876543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.27  E-value=0.00082  Score=59.50  Aligned_cols=71  Identities=18%  Similarity=0.293  Sum_probs=49.8

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEee-----eceEEEecCCCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHR-----TGSLRLYNIGPQD  386 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~-----~~sL~I~~v~~~D  386 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  |.   .+.         ...++....     ..+|.|.++..+|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            3445667788999999999988777778999972  21   110         112333222     2379999999999


Q ss_pred             CeEEEEEEEe
Q psy11143        387 SGLYRCTASN  396 (940)
Q Consensus       387 ~G~YtC~A~N  396 (940)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.26  E-value=0.00032  Score=62.74  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=50.3

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce--e-ec----------cCCcEEEee-----eceEEEecCCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA--E-FV----------EDRNHKIHR-----TGSLRLYNIGPQ  385 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~--~-i~----------~~~~~~i~~-----~~sL~I~~v~~~  385 (940)
                      ...|..+.+.+|++|+|.|.........+.|++-  |.  . +.          ...++....     ...|.|.++..+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            3456677899999999999987666678999972  21  1 10          111222211     125999999999


Q ss_pred             CCeEEEEEEEeC
Q psy11143        386 DSGLYRCTASNL  397 (940)
Q Consensus       386 D~G~YtC~A~N~  397 (940)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0003  Score=62.86  Aligned_cols=73  Identities=23%  Similarity=0.327  Sum_probs=51.7

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcC-CCeEEEEeCC----e-ee---------------ccCCcEEEeee---ceEEEe
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDE----A-EF---------------VEDRNHKIHRT---GSLRLY  380 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~g----~-~i---------------~~~~~~~i~~~---~sL~I~  380 (940)
                      +...|.+.++.+|++|+|.|.+.... ...+.|+|..    . .+               ....++.....   .+|+|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            45567788999999999999986543 4578999721    1 01               01134444333   269999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy11143        381 NIGPQDSGLYRCTASNL  397 (940)
Q Consensus       381 ~v~~~D~G~YtC~A~N~  397 (940)
                      ++..+|+|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998753

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.26  E-value=0.00039  Score=61.60  Aligned_cols=69  Identities=19%  Similarity=0.376  Sum_probs=46.1

Q ss_pred             CCceeecCCCeEEEEEeecCc-CCCeEEEEeC--Cee---ec---------cCCcEEEee---eceEEEecCCCCCCeEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGE-PLPRISWSKD--EAE---FV---------EDRNHKIHR---TGSLRLYNIGPQDSGLY  390 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~--g~~---i~---------~~~~~~i~~---~~sL~I~~v~~~D~G~Y  390 (940)
                      |..+.+.+|++|+|.|..... ....+.|++.  |..   +.         ...++....   ..+|.|.++..+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            445788899999999997654 3446899972  211   10         011111111   23699999999999999


Q ss_pred             EEEEEeC
Q psy11143        391 RCTASNL  397 (940)
Q Consensus       391 tC~A~N~  397 (940)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9988643

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.24  E-value=0.00044  Score=61.54  Aligned_cols=72  Identities=14%  Similarity=0.318  Sum_probs=48.8

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeec---------------CCCCeEEE---eeceEEEEccccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD---------------SDDHVTYE---HDGFVLVLNGVRE  108 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~---------------~~~~~~~~---~~gs~L~I~~v~~  108 (940)
                      ...|..+.+.+|++|+|.|..++. ...+.|||.  |+...               ...+....   .....|+|.++++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            345777889999999999997543 347899982  21110               01122121   1234589999999


Q ss_pred             CCCeEEEEEEEeC
Q psy11143        109 SDAGVYNCVAQNS  121 (940)
Q Consensus       109 ~DsG~YtC~a~n~  121 (940)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          82 GDSALYLCASSLA   94 (113)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             ccceeeeeeeeCC
Confidence            9999999988754

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.23  E-value=0.00034  Score=62.21  Aligned_cols=72  Identities=15%  Similarity=0.339  Sum_probs=48.5

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC-CCeEEEEEC--CEeec----------CCCCeEEE----eeceEEEEcccccCCCe
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHD--GNSLD----------SDDHVTYE----HDGFVLVLNGVRESDAG  112 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~kd--g~~I~----------~~~~~~~~----~~gs~L~I~~v~~~DsG  112 (940)
                      .+|..+.+.+|++|+|.|...+.. ...+.|||.  |+.+.          .....++.    .....|+|.+++.+|+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            457788899999999999986533 345899983  21110          01112222    12245899999999999


Q ss_pred             EEEEEEEeC
Q psy11143        113 VYNCVAQNS  121 (940)
Q Consensus       113 ~YtC~a~n~  121 (940)
                      .|.|.+...
T Consensus        83 ~YyCa~~~~   91 (112)
T d1kgcd1          83 VYYCILPLA   91 (112)
T ss_dssp             EEEEECCCC
T ss_pred             eEeeeEecC
Confidence            999987543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.22  E-value=0.00058  Score=60.61  Aligned_cols=71  Identities=21%  Similarity=0.364  Sum_probs=48.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CE------------eecC----CCCeEEE---eeceEEEEcccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GN------------SLDS----DDHVTYE---HDGFVLVLNGVR  107 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~------------~I~~----~~~~~~~---~~gs~L~I~~v~  107 (940)
                      ...|....+.+|++|+|.|...+ ....+.|||.  ++            ....    ..+....   .+...|+|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            44577788999999999998654 3457999973  11            0000    1122222   223568999999


Q ss_pred             cCCCeEEEEEEEe
Q psy11143        108 ESDAGVYNCVAQN  120 (940)
Q Consensus       108 ~~DsG~YtC~a~n  120 (940)
                      ++|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 QEDSAVYLCASSL   94 (112)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCEEEEEeeeC
Confidence            9999999998864

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00023  Score=61.15  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA  394 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A  394 (940)
                      .+|.+...|.. .+..|++|+|.|... .+...+.|+|+|...... +........+.|.+++.+|+|+|+|..
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQ-RGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECS-SSCSEEEEEEESSSCEEE-EEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCC-CCCCEEEEEECCCcccee-ecCCCceeEEEecccChhcCceEEEEe
Confidence            46888888854 588899999999975 455699999987532211 111112347999999999999999964

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.00021  Score=64.39  Aligned_cols=72  Identities=17%  Similarity=0.331  Sum_probs=49.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--E---eec---------CCCCeEEE--eeceEEEEcccccCCCe
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--N---SLD---------SDDHVTYE--HDGFVLVLNGVRESDAG  112 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~---~I~---------~~~~~~~~--~~gs~L~I~~v~~~DsG  112 (940)
                      ...|..+.+.+|++|+|.|..++.-...+.|||..  .   .|-         ...++...  .....|.|.+++.+|+|
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA   84 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCe
Confidence            34567778999999999999876544578999731  1   110         11222222  22346999999999999


Q ss_pred             EEEEEEEe
Q psy11143        113 VYNCVAQN  120 (940)
Q Consensus       113 ~YtC~a~n  120 (940)
                      .|.|.+..
T Consensus        85 vYyCa~~~   92 (119)
T d1f3rb2          85 TYFCYQYN   92 (119)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99997653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.21  E-value=0.00033  Score=61.05  Aligned_cols=79  Identities=20%  Similarity=0.339  Sum_probs=49.5

Q ss_pred             CCCeEEeCCCcEEEecCCeEEEEEEeecc-C-CCeEEEEECCEeecCCC---CeEEEeeceE--EEEcccccCCCeEEEE
Q psy11143         44 APPIFIQRPVSTTYSTGSTSRITCLVEGH-P-LPQMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNC  116 (940)
Q Consensus        44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P-~p~V~W~kdg~~I~~~~---~~~~~~~gs~--L~I~~v~~~DsG~YtC  116 (940)
                      .||.+.+.|.. .+..|+.++|.|.+.|. | ...|+|++||+.+....   ......++..  .....+..++.+.|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            35655554433 24678999999999994 4 45999999998876321   1111223321  1222334567789999


Q ss_pred             EEEeCCC
Q psy11143        117 VAQNSEG  123 (940)
Q Consensus       117 ~a~n~~g  123 (940)
                      +|.+..-
T Consensus        81 ~V~H~sl   87 (100)
T d1muja1          81 KVEHWGL   87 (100)
T ss_dssp             EEECTTS
T ss_pred             EEEECCC
Confidence            9998653

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.21  E-value=0.00037  Score=60.61  Aligned_cols=77  Identities=13%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             eCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC-eEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      ..+|.+...|.. .|..|++|+|.|...- +...+.|+|+|........ .........+.|..+...|+|.|+|.....
T Consensus         4 ~pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           4 YEKPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SCCCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            356888888765 5799999999998643 4568999999865332111 111122234578889999999999987654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.20  E-value=0.00079  Score=60.08  Aligned_cols=84  Identities=18%  Similarity=0.369  Sum_probs=55.2

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce--e-e---------ccCCcEEEee-----eceEEEecCCCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA--E-F---------VEDRNHKIHR-----TGSLRLYNIGPQD  386 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~--~-i---------~~~~~~~i~~-----~~sL~I~~v~~~D  386 (940)
                      ...|..+.+.+|++|+|.|...+. ...+.|++-  |.  . +         ....++.+..     ..+|.|.++..+|
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            345667788999999999998754 347999972  11  1 0         1112222211     2379999999999


Q ss_pred             CeEEEEEEEeCCeeEE--EEEEEEEe
Q psy11143        387 SGLYRCTASNLLGEDV--AEGYLTVT  410 (940)
Q Consensus       387 ~G~YtC~A~N~~G~~~--~s~~L~V~  410 (940)
                      +|.|.|.+....+...  .-..|+|+
T Consensus        83 sa~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          83 TGLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             CEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             eeeEcccccCCCCCcEECCCEEEEEe
Confidence            9999998875544322  13457776

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0011  Score=57.07  Aligned_cols=66  Identities=18%  Similarity=0.455  Sum_probs=46.4

Q ss_pred             cCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEE--eece-----EEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143         59 TGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYE--HDGF-----VLVLNGVRESDAGVYNCVAQNSEGSAES  127 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~--~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~~~~  127 (940)
                      .|+.++|.|.+.| +|.+.|+|+++|+.+.........  .+|.     .|.+   ...+...|+|.+.+..-....
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l~~~~   88 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQ   88 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCCCCcE
Confidence            5788999999987 798999999999988654332222  1222     2333   445678999999988665443

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0013  Score=57.76  Aligned_cols=69  Identities=16%  Similarity=0.297  Sum_probs=46.0

Q ss_pred             CceeecCCCeEEEEEeecCcC--CCeEEEEeCC--ee---e---------ccCCcEEEee-----eceEEEecCCCCCCe
Q psy11143        330 FDMRAPAGSSVEIPCKPDGEP--LPRISWSKDE--AE---F---------VEDRNHKIHR-----TGSLRLYNIGPQDSG  388 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~g--~~---i---------~~~~~~~i~~-----~~sL~I~~v~~~D~G  388 (940)
                      ..+.+.+|++|+|.|......  ...+.|+|..  ..   +         ....++.+..     ..+|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            346788999999999865332  2367898732  11   1         1123343332     226999999999999


Q ss_pred             EEEEEEEeCC
Q psy11143        389 LYRCTASNLL  398 (940)
Q Consensus       389 ~YtC~A~N~~  398 (940)
                      .|.|.+....
T Consensus        84 ~Y~C~v~~~~   93 (108)
T d1hkfa_          84 HYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCC
Confidence            9999987543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.18  E-value=0.00041  Score=61.81  Aligned_cols=74  Identities=14%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             EEcCCceeecCCCeEEEEEeecCc-CCCeEEEEeC--Cee---ec----------cCCcEEEee-----eceEEEecCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKD--EAE---FV----------EDRNHKIHR-----TGSLRLYNIGP  384 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~--g~~---i~----------~~~~~~i~~-----~~sL~I~~v~~  384 (940)
                      ...|..+.+.+|++|+|.|..... ....+.|++-  +..   +.          ...+.....     ..+|.|.++..
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            345667788999999999986533 3457889872  211   10          011222221     22699999999


Q ss_pred             CCCeEEEEEEEeCCe
Q psy11143        385 QDSGLYRCTASNLLG  399 (940)
Q Consensus       385 ~D~G~YtC~A~N~~G  399 (940)
                      +|+|.|.|.+....+
T Consensus        84 ~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          84 VDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGCEEEEEEEECSBT
T ss_pred             ccCCCceEeCCCCCC
Confidence            999999998876543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.15  E-value=0.00074  Score=59.70  Aligned_cols=70  Identities=21%  Similarity=0.413  Sum_probs=50.3

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEee---eceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHR---TGSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~---~~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  +.   .+.         ...++....   ...|.|.++..+|+|
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCe
Confidence            3456777889999999999987666668999972  11   111         113444433   236999999999999


Q ss_pred             EEEEEEE
Q psy11143        389 LYRCTAS  395 (940)
Q Consensus       389 ~YtC~A~  395 (940)
                      .|.|.+.
T Consensus        85 ~YyCA~~   91 (109)
T d1mqkl_          85 SYYCQHH   91 (109)
T ss_dssp             EEEEEEC
T ss_pred             eEEEeee
Confidence            9999765

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00034  Score=62.23  Aligned_cols=69  Identities=20%  Similarity=0.386  Sum_probs=45.7

Q ss_pred             cEEEecCCeEEEEEEeec--cCCCeEEEEEC--CE---eec-C-----------CCCeEEEe---ec-eEEEEcccccCC
Q psy11143         54 STTYSTGSTSRITCLVEG--HPLPQMTWFHD--GN---SLD-S-----------DDHVTYEH---DG-FVLVLNGVRESD  110 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g--~P~p~V~W~kd--g~---~I~-~-----------~~~~~~~~---~g-s~L~I~~v~~~D  110 (940)
                      ...+.+|++|+|.|...+  .....+.|+|.  +.   .+. .           ..++.+..   .+ ..|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            466789999999999764  34457889973  21   110 0           01233331   12 348999999999


Q ss_pred             CeEEEEEEEeCC
Q psy11143        111 AGVYNCVAQNSE  122 (940)
Q Consensus       111 sG~YtC~a~n~~  122 (940)
                      +|.|.|.+....
T Consensus        88 sg~Y~Cav~~~~   99 (113)
T d1smoa_          88 SGLYQCVIYQPP   99 (113)
T ss_dssp             CEEEEEEECCTT
T ss_pred             CceEEEEEECCC
Confidence            999999886543

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.15  E-value=0.0017  Score=57.47  Aligned_cols=73  Identities=18%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEee------c---------CCCCeEEE---eeceEEEEcccc
Q psy11143         48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL------D---------SDDHVTYE---HDGFVLVLNGVR  107 (940)
Q Consensus        48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I------~---------~~~~~~~~---~~gs~L~I~~v~  107 (940)
                      +...|..+.+.+|++|+|.|.... ....+.|||.  |..+      .         ........   .....|.|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            456677888999999999998643 3457889973  2110      0         01112211   122458999999


Q ss_pred             cCCCeEEEEEEEeC
Q psy11143        108 ESDAGVYNCVAQNS  121 (940)
Q Consensus       108 ~~DsG~YtC~a~n~  121 (940)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999998753

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.12  E-value=0.00083  Score=59.32  Aligned_cols=71  Identities=17%  Similarity=0.427  Sum_probs=51.0

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEeeec---eEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHRTG---SLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~~~---sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|...+.....+.|++.  +.   .+.         ...++.....+   .|.|.+++.+|+|
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa   86 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIA   86 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCc
Confidence            3446677889999999999988766668899972  11   110         12345444332   6999999999999


Q ss_pred             EEEEEEEe
Q psy11143        389 LYRCTASN  396 (940)
Q Consensus       389 ~YtC~A~N  396 (940)
                      .|.|.+..
T Consensus        87 ~YyCA~~~   94 (109)
T d1bwwa_          87 TYYCQQYQ   94 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeecC
Confidence            99998654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.11  E-value=0.00075  Score=60.16  Aligned_cols=82  Identities=20%  Similarity=0.321  Sum_probs=53.3

Q ss_pred             ceeecCCCeEEEEEeecCcC--CCeEEEEeCC--e---eec---------cCCcEEEee---eceEEEecCCCCCCeEEE
Q psy11143        331 DMRAPAGSSVEIPCKPDGEP--LPRISWSKDE--A---EFV---------EDRNHKIHR---TGSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~g--~---~i~---------~~~~~~i~~---~~sL~I~~v~~~D~G~Yt  391 (940)
                      .+.+.+|++|+|.|.+.+.-  ...+.|++..  .   .+.         ...++....   ...|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            56788999999999987653  4578999732  1   110         112444433   347999999999999999


Q ss_pred             EEEEeCCeeE-E--EEEEEEEecC
Q psy11143        392 CTASNLLGED-V--AEGYLTVTGE  412 (940)
Q Consensus       392 C~A~N~~G~~-~--~s~~L~V~~~  412 (940)
                      |.+....... .  .-..|+|.+.
T Consensus        89 CA~~~~~~~~~~FG~GT~LtVlg~  112 (114)
T d2rhea_          89 CAAWNDSLDEPGFGGGTKLTVLGQ  112 (114)
T ss_dssp             EEEEETTTTEEEECCCEEEEECSC
T ss_pred             EeecCCCCCCCEECCCeEEEECCC
Confidence            9886432111 1  1235777653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.11  E-value=0.00051  Score=60.08  Aligned_cols=70  Identities=16%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---ec---------cCCcEEEeee---ceEEEecCCCCCCeEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---FV---------EDRNHKIHRT---GSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i~---------~~~~~~i~~~---~sL~I~~v~~~D~G~Yt  391 (940)
                      |..+.+.+|++|+|.|.........+.|++-  |..   +.         ...++....+   ..|.|.++..+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            3457788999999999987666667899973  211   10         1123333222   36999999999999999


Q ss_pred             EEEEeCC
Q psy11143        392 CTASNLL  398 (940)
Q Consensus       392 C~A~N~~  398 (940)
                      |.+....
T Consensus        85 CA~~~~~   91 (103)
T d8faba1          85 CQAWDNS   91 (103)
T ss_dssp             EEEEETT
T ss_pred             eeecCCC
Confidence            9876543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.10  E-value=0.0011  Score=58.76  Aligned_cols=72  Identities=13%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             EEcCCceeecCCCeEEEEEeecCc----CCCeEEEEeC--Cee---e-c--------cCCcEEEeee---ceEEEecCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGE----PLPRISWSKD--EAE---F-V--------EDRNHKIHRT---GSLRLYNIGP  384 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~----P~p~i~W~k~--g~~---i-~--------~~~~~~i~~~---~sL~I~~v~~  384 (940)
                      ...|..+.+.+|++|+|.|.+...    ....+.|++.  |..   + .        ...++.....   ..|.|.++..
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE   84 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence            345667788999999999987542    1225899873  211   1 0        1235554433   3699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy11143        385 QDSGLYRCTASNL  397 (940)
Q Consensus       385 ~D~G~YtC~A~N~  397 (940)
                      +|++.|.|.+...
T Consensus        85 ~DsA~YyCa~~~~   97 (111)
T d2gsia1          85 EDAATYYCSHIRE   97 (111)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             cCCceEEEEECCC
Confidence            9999999976654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.10  E-value=0.00032  Score=61.89  Aligned_cols=71  Identities=20%  Similarity=0.391  Sum_probs=50.2

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---ec---------cCCcEEEee---eceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---FV---------EDRNHKIHR---TGSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i~---------~~~~~~i~~---~~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.........+.|++.  |..   +.         ...++....   ..+|.|.+++.+|+|
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIA   84 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCC
Confidence            3456778899999999999988777778999963  211   10         112222222   237999999999999


Q ss_pred             EEEEEEEe
Q psy11143        389 LYRCTASN  396 (940)
Q Consensus       389 ~YtC~A~N  396 (940)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d3cx5k1          85 TYFCQHHI   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             cEEeeeCC
Confidence            99997643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.10  E-value=0.00072  Score=60.18  Aligned_cols=70  Identities=17%  Similarity=0.335  Sum_probs=47.4

Q ss_pred             EcCCceeecCCCeEEEEEeecCc------CCCeEEEEeC--Cee---e---------ccCCcEEEeee---ceEEEecCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGE------PLPRISWSKD--EAE---F---------VEDRNHKIHRT---GSLRLYNIG  383 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~------P~p~i~W~k~--g~~---i---------~~~~~~~i~~~---~sL~I~~v~  383 (940)
                      ..|..+.+.+|++|+|.|...+.      ....+.|++.  |..   +         ....++....+   .+|.|.+++
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~   85 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ   85 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence            44667788999999999987642      1135899973  211   1         11233433332   369999999


Q ss_pred             CCCCeEEEEEEEe
Q psy11143        384 PQDSGLYRCTASN  396 (940)
Q Consensus       384 ~~D~G~YtC~A~N  396 (940)
                      .+|+|.|.|.+.+
T Consensus        86 ~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          86 AEDLAVYYCKQSY   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCCCeEEEecccC
Confidence            9999999997654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.09  E-value=0.00091  Score=59.53  Aligned_cols=70  Identities=20%  Similarity=0.472  Sum_probs=48.8

Q ss_pred             EcCCceeecCCCeEEEEEeecCc-CCCeEEEEeC-----Ceee------c-----------cCCcEEEee-----eceEE
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKD-----EAEF------V-----------EDRNHKIHR-----TGSLR  378 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~-----g~~i------~-----------~~~~~~i~~-----~~sL~  378 (940)
                      ..|..+.+.+|++|+|.|.+.+. ....+.|++-     +..+      .           ...++....     ..+|.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            45667789999999999998764 4457999863     2211      0           112333222     23699


Q ss_pred             EecCCCCCCeEEEEEEEe
Q psy11143        379 LYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       379 I~~v~~~D~G~YtC~A~N  396 (940)
                      |.+++.+|+|.|.|.+..
T Consensus        83 I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ecccCCCCCcEEEEeEcC
Confidence            999999999999998753

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.09  E-value=0.00085  Score=58.71  Aligned_cols=70  Identities=17%  Similarity=0.357  Sum_probs=47.7

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCC--e---eec---------cCCcEEEee---eceEEEecCCCCCCe
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--A---EFV---------EDRNHKIHR---TGSLRLYNIGPQDSG  388 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g--~---~i~---------~~~~~~i~~---~~sL~I~~v~~~D~G  388 (940)
                      ...|..+.+.+|++|+|.|.... ....+.|++..  .   .+.         ...++....   ..+|.|.++..+|+|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            34567778999999999998754 34468999731  1   010         122333332   236999999999999


Q ss_pred             EEEEEEEe
Q psy11143        389 LYRCTASN  396 (940)
Q Consensus       389 ~YtC~A~N  396 (940)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (104)
T d1yqvl1          83 TYYCQQWG   90 (104)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99997643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.08  E-value=0.0013  Score=58.12  Aligned_cols=72  Identities=15%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---ec---------cCCcEEEee-----eceEEEecCCCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---FV---------EDRNHKIHR-----TGSLRLYNIGPQD  386 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i~---------~~~~~~i~~-----~~sL~I~~v~~~D  386 (940)
                      ...|..+.+.+|++|+|.|.....-...+.|++.  |..   +.         ...++....     ...|.|.++..+|
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~D   83 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCC
Confidence            3456667889999999999877655568999972  211   10         112332221     2369999999999


Q ss_pred             CeEEEEEEEeC
Q psy11143        387 SGLYRCTASNL  397 (940)
Q Consensus       387 ~G~YtC~A~N~  397 (940)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (110)
T d1ac6a_          84 SAVYYCALSGG   94 (110)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcccceeecCC
Confidence            99999988754

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.07  E-value=0.00051  Score=61.15  Aligned_cols=75  Identities=15%  Similarity=0.279  Sum_probs=50.1

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Ee---e---c---------CCCCeEEE---eeceEEEEccc
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NS---L---D---------SDDHVTYE---HDGFVLVLNGV  106 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~---I---~---------~~~~~~~~---~~gs~L~I~~v  106 (940)
                      .+...|..+.+.+|++|+|.|..... ...+.|||..  +.   |   .         ...++...   .....|.|.++
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            34566788889999999999987543 3479999742  10   1   0         01111111   22346899999


Q ss_pred             ccCCCeEEEEEEEeCC
Q psy11143        107 RESDAGVYNCVAQNSE  122 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~  122 (940)
                      +.+|+|.|.|.+....
T Consensus        82 ~~~Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          82 ELEDSAMYFCASSLRW   97 (113)
T ss_dssp             CGGGCEEECEEEESSS
T ss_pred             CcCCceeEEEEeecCC
Confidence            9999999999876543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00034  Score=60.47  Aligned_cols=74  Identities=18%  Similarity=0.295  Sum_probs=53.0

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc--CCcEEEeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIHRTGSLRLYNIGPQDSGLYRCTASN  396 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~--~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N  396 (940)
                      ++|.+...|. ..+..|++|+|.|... .+...+.++|+|.....  ...........+.|.+++.+|+|.|+|....
T Consensus         3 PkP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           3 PKPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            5688888776 4578999999999964 45568899998864321  1100011234799999999999999998654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.05  E-value=0.00063  Score=60.03  Aligned_cols=70  Identities=23%  Similarity=0.406  Sum_probs=48.1

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---ec---------cCCcEEEee-----eceEEEecCCCCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---FV---------EDRNHKIHR-----TGSLRLYNIGPQDS  387 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i~---------~~~~~~i~~-----~~sL~I~~v~~~D~  387 (940)
                      ..|..+.+.+|++|+|.|.........+.|++-  |..   +.         ...+.....     ..+|.|.++..+|+
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            345667788999999999987655567999973  211   10         111222221     22699999999999


Q ss_pred             eEEEEEEEe
Q psy11143        388 GLYRCTASN  396 (940)
Q Consensus       388 G~YtC~A~N  396 (940)
                      |.|.|.+.-
T Consensus        84 a~YyCa~~~   92 (110)
T d1u3ha1          84 ATYFCAASA   92 (110)
T ss_dssp             SEEEECCEE
T ss_pred             eeEeeeecC
Confidence            999998764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0018  Score=55.60  Aligned_cols=67  Identities=18%  Similarity=0.448  Sum_probs=46.9

Q ss_pred             cCCeEEEEEEEee-eCCCeEEEEECCeecCCCCceEEee--cCe-----EEEEeeeccCCCeEEEEEEEeCCCCceeE
Q psy11143        243 TGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEH--DGF-----VLVLNGVRESDAGVYNCVAQNSEGSAESV  312 (940)
Q Consensus       243 ~G~~v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~~~~--~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s  312 (940)
                      .++.++|.|.+.| +|.+.|+|+++|..+..........  +|.     .|.+   ...+...|+|.+.+........
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCCCCcEE
Confidence            5778999999998 6999999999998886543332222  232     1333   3456779999999987655443

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.04  E-value=0.0014  Score=56.78  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEE--eeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGSLRLYNIGPQDSGLYRCTASNLL  398 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i--~~~~sL~I~~v~~~D~G~YtC~A~N~~  398 (940)
                      .+|.+...|. ..+..|++|+|.|... .+...+.|+|+|...........  .....+.|..+...|+|+|+|......
T Consensus         5 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~   82 (99)
T d1nkra2           5 EKPSLSAQPG-PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD   82 (99)
T ss_dssp             CCCEEEEESC-SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCCEEEEeCC-CcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCC
Confidence            5788888885 4689999999999875 45569999999864321111111  112356788888899999999876543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.0021  Score=55.63  Aligned_cols=67  Identities=13%  Similarity=0.341  Sum_probs=44.7

Q ss_pred             ecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEE--eecCe--EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTY--EHDGF--VLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~--~~~g~--sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      ..|+.++|.|.+.|+ |.. .|+|+++|..+........  ..+++  ......+...+.+.|+|++.+..-.
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~   88 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMA   88 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTSS
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCCC
Confidence            468889999999996 433 8999999998865433222  22332  1222334556677899999987543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.01  E-value=0.0014  Score=56.89  Aligned_cols=67  Identities=19%  Similarity=0.328  Sum_probs=44.1

Q ss_pred             EecCCeEEEEEEEeee-CC-CeEEEEECCeecCCCCc---eEEeecCe--EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        241 YSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDH---VTYEHDGF--VLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~~---~~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      +..|+.++|.|.+.|+ |. ..|+|++||..+..+..   .....+|.  ......+...+.+.|+|++.+..-
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   87 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGL   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECCC
Confidence            4568899999999996 43 48999999988864321   11223332  122223445667789999998754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.00  E-value=0.001  Score=59.55  Aligned_cols=73  Identities=22%  Similarity=0.417  Sum_probs=52.4

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce--e-e----------c----cCCcEEEee----eceEEEec
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA--E-F----------V----EDRNHKIHR----TGSLRLYN  381 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~--~-i----------~----~~~~~~i~~----~~sL~I~~  381 (940)
                      +...|..+.+.+|++|+|.|...+.....+.|+|.  |.  . +          .    ...++.+..    ...|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            34456667889999999999988776778999972  21  1 1          0    123444433    23699999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy11143        382 IGPQDSGLYRCTASNL  397 (940)
Q Consensus       382 v~~~D~G~YtC~A~N~  397 (940)
                      +..+|+|.|.|.+.-.
T Consensus        84 ~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCceEEEEEecC
Confidence            9999999999998654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.00  E-value=0.00078  Score=59.54  Aligned_cols=69  Identities=14%  Similarity=0.288  Sum_probs=48.2

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---eec---------cCCcEEEeee---ceEEEecCCCCCCeEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EFV---------EDRNHKIHRT---GSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i~---------~~~~~~i~~~---~sL~I~~v~~~D~G~Yt  391 (940)
                      |..+.+.+|++|+|.|.........+.|++.  +.   .+.         ...++.....   .+|.|.+++.+|+|.|.
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy   86 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence            3456788999999999977655567999863  21   110         1233333332   37999999999999999


Q ss_pred             EEEEeC
Q psy11143        392 CTASNL  397 (940)
Q Consensus       392 C~A~N~  397 (940)
                      |.+...
T Consensus        87 CA~~~~   92 (109)
T d1w72l1          87 CQVWDS   92 (109)
T ss_dssp             EEEEET
T ss_pred             EEecCC
Confidence            988754

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.00  E-value=0.00067  Score=60.42  Aligned_cols=72  Identities=13%  Similarity=0.190  Sum_probs=48.7

Q ss_pred             EEcCCceeecCCCeEEEEEeecC-cCCCeEEEEeC--Ce-e--ec----------cCCcEEEee-----eceEEEecCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKD--EA-E--FV----------EDRNHKIHR-----TGSLRLYNIGP  384 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~--g~-~--i~----------~~~~~~i~~-----~~sL~I~~v~~  384 (940)
                      ...|..+.+.+|++|+|.|.... .....+.|++.  +. .  +.          ...++.+..     ..+|.|.+++.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            34456678899999999998753 34457889972  11 1  10          112333332     23699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy11143        385 QDSGLYRCTASNL  397 (940)
Q Consensus       385 ~D~G~YtC~A~N~  397 (940)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 EDSAVYFCAMRGD   95 (115)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cccccccceeecC
Confidence            9999999988654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.99  E-value=0.0012  Score=58.69  Aligned_cols=70  Identities=16%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             EcCCceeecCCCeEEEEEeecCcC-----CCeEEEEeC--Cee---ec---------cCCcEEEeee---ceEEEecCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEP-----LPRISWSKD--EAE---FV---------EDRNHKIHRT---GSLRLYNIGP  384 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P-----~p~i~W~k~--g~~---i~---------~~~~~~i~~~---~sL~I~~v~~  384 (940)
                      ..|..+.+.+|++|+|.|.+.+..     ...+.|++.  |..   +.         ...++.....   ..|.|.++..
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~   85 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA   85 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence            446677899999999999876433     236889863  211   10         1234443322   2699999999


Q ss_pred             CCCeEEEEEEEe
Q psy11143        385 QDSGLYRCTASN  396 (940)
Q Consensus       385 ~D~G~YtC~A~N  396 (940)
                      +|+|.|.|...+
T Consensus        86 eDsAvYYC~~~~   97 (112)
T d1ncwl1          86 EDLGVYYCWQGT   97 (112)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcCEeEEEEcCC
Confidence            999999996543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00088  Score=57.52  Aligned_cols=65  Identities=20%  Similarity=0.389  Sum_probs=42.4

Q ss_pred             cCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC--CeEE--EeeceE--EEEcccccCCCeEEEEEEEeCCC
Q psy11143         59 TGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD--HVTY--EHDGFV--LVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~--~~~~--~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      .++.++|.|.+.| +|. ..|+|++||+.+....  ....  ..+++.  .....+...+...|+|.+.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            4678999999999 564 4999999999885321  1122  222221  22233455667789999998743

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0026  Score=54.42  Aligned_cols=67  Identities=21%  Similarity=0.370  Sum_probs=43.7

Q ss_pred             ecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeEEE--eeceE--EEEcccccCCCeEEEEEEEeCCCc
Q psy11143         58 STGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVTYE--HDGFV--LVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~~~--~~gs~--L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ..|+.++|.|.+.| +|. ..|+|++||..+.........  .+++.  .....+...+...|+|.+.+..-.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~   85 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLA   85 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCC
Confidence            35789999999999 554 489999999987643222211  22221  223334556677899999987543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.98  E-value=0.0014  Score=58.12  Aligned_cols=71  Identities=23%  Similarity=0.402  Sum_probs=47.3

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEee------c-------C--CCCeEEE---eeceEEEEccccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL------D-------S--DDHVTYE---HDGFVLVLNGVRE  108 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I------~-------~--~~~~~~~---~~gs~L~I~~v~~  108 (940)
                      ...|....+.+|++++|.|..+. ....+.|||.  |+..      .       .  ..+....   .....|.|.++.+
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            44577788999999999998754 3457999972  2111      0       0  0111111   1123589999999


Q ss_pred             CCCeEEEEEEEe
Q psy11143        109 SDAGVYNCVAQN  120 (940)
Q Consensus       109 ~DsG~YtC~a~n  120 (940)
                      +|+|.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0015  Score=56.66  Aligned_cols=68  Identities=18%  Similarity=0.428  Sum_probs=45.9

Q ss_pred             EecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc--eEEeecCeE--EEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        241 YSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH--VTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~--~~~~~~g~s--L~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      ...|+.++|.|.+.|+ |.. .|+|.+||..+.....  .....+|+-  ...-.+..++.+.|+|++.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~   89 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLS   89 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTCS
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCCCC
Confidence            3568899999999996 443 8999999998864322  223334431  222344556777999999987543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.96  E-value=0.0014  Score=58.04  Aligned_cols=71  Identities=15%  Similarity=0.322  Sum_probs=49.0

Q ss_pred             cCCceeecCCCeEEEEEeecCcCC--CeEEEEeC--Ceee------------ccCCcEEEee-----eceEEEecCCCCC
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSKD--EAEF------------VEDRNHKIHR-----TGSLRLYNIGPQD  386 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~P~--p~i~W~k~--g~~i------------~~~~~~~i~~-----~~sL~I~~v~~~D  386 (940)
                      .|..+.+.+|++|+|.|...+...  ..+.|++.  +...            ....++....     ...|.|.+++.+|
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            355678999999999999876543  35899873  2110            0123444432     2379999999999


Q ss_pred             CeEEEEEEEeCC
Q psy11143        387 SGLYRCTASNLL  398 (940)
Q Consensus       387 ~G~YtC~A~N~~  398 (940)
                      +|.|.|.+.+..
T Consensus        86 sa~YyCA~~~~~   97 (111)
T d1cd0a_          86 EADYYCQSYDAR   97 (111)
T ss_dssp             CEEEEEEEEETT
T ss_pred             CcEEEEeeccCC
Confidence            999999876643

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.96  E-value=0.0011  Score=57.38  Aligned_cols=79  Identities=20%  Similarity=0.339  Sum_probs=48.8

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeecc-C-CCeEEEEECCEeecCCCC---eEEEeeceE--EEEcccccCCCeEEEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGH-P-LPQMTWFHDGNSLDSDDH---VTYEHDGFV--LVLNGVRESDAGVYNCV  117 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~-P-~p~V~W~kdg~~I~~~~~---~~~~~~gs~--L~I~~v~~~DsG~YtC~  117 (940)
                      ||.+.+.+.. .+..++.++|.|.+.|. | ...|+|++||+.+.....   .....+++.  .....+..++...|+|.
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~   81 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCV   81 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEE
Confidence            5555443222 14567899999999994 4 459999999998854321   222233322  11123445666789999


Q ss_pred             EEeCCCc
Q psy11143        118 AQNSEGS  124 (940)
Q Consensus       118 a~n~~g~  124 (940)
                      +.+....
T Consensus        82 V~H~sl~   88 (98)
T d1hdmb1          82 VEHIGAP   88 (98)
T ss_dssp             EECTTSS
T ss_pred             EEeCCCC
Confidence            9987554

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.96  E-value=0.0022  Score=57.81  Aligned_cols=72  Identities=21%  Similarity=0.476  Sum_probs=49.0

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CE-------------eec----CCCCeEEEe----eceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GN-------------SLD----SDDHVTYEH----DGFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~-------------~I~----~~~~~~~~~----~gs~L~I~  104 (940)
                      ..+..+++.+|++++|.|.++|..  ...+.|||.  |+             ...    ...++.+..    +...|.|.
T Consensus         6 Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~   85 (123)
T d1hxmb1           6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH   85 (123)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccc
Confidence            334567888999999999998743  346889973  11             110    112344442    12458999


Q ss_pred             ccccCCCeEEEEEEEeC
Q psy11143        105 GVRESDAGVYNCVAQNS  121 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~  121 (940)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsa~YyCA~~~~  102 (123)
T d1hxmb1          86 NVEKQDIATYYCALWEA  102 (123)
T ss_dssp             SCCGGGCEEEEEEEEEE
T ss_pred             ccccccCcEEEEeeeCC
Confidence            99999999999987653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0012  Score=56.99  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe-EEE---eeceEEEEcccccCCCeEEEEEEEe
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-TYE---HDGFVLVLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~-~~~---~~gs~L~I~~v~~~DsG~YtC~a~n  120 (940)
                      +|.+...|.. .|..|++|+|.|.... ....+.++|+|......... ...   .....+.|.+|+.+|+|.|+|....
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            5777778765 4899999999999643 34578889988754322110 000   1223579999999999999998865


Q ss_pred             CC
Q psy11143        121 SE  122 (940)
Q Consensus       121 ~~  122 (940)
                      ..
T Consensus        82 ~~   83 (98)
T d1ugna2          82 SN   83 (98)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.0022  Score=56.65  Aligned_cols=68  Identities=12%  Similarity=0.310  Sum_probs=47.1

Q ss_pred             CceeecCCCeEEEEEeecCcCCC---eEEEEeC--C-ee--ec---------cCCcEEEee---eceEEEecCCCCCCeE
Q psy11143        330 FDMRAPAGSSVEIPCKPDGEPLP---RISWSKD--E-AE--FV---------EDRNHKIHR---TGSLRLYNIGPQDSGL  389 (940)
Q Consensus       330 ~~~~v~~G~~vtL~C~v~g~P~p---~i~W~k~--g-~~--i~---------~~~~~~i~~---~~sL~I~~v~~~D~G~  389 (940)
                      ..+.+.+|++|+|.|...+....   .+.|++-  | .+  +.         ...++....   ...|.|.++..+|+|.
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~   87 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI   87 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEe
Confidence            35678899999999998754332   4889862  2 21  10         123444433   2369999999999999


Q ss_pred             EEEEEEeC
Q psy11143        390 YRCTASNL  397 (940)
Q Consensus       390 YtC~A~N~  397 (940)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (110)
T d1oaql_          88 YFCALWYS   95 (110)
T ss_dssp             EEEEEEET
T ss_pred             EEEEcccC
Confidence            99987754

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.94  E-value=0.0011  Score=58.86  Aligned_cols=74  Identities=22%  Similarity=0.385  Sum_probs=48.9

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--Ee---e---cC---------CCCeEEE---eeceEEEEccccc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--NS---L---DS---------DDHVTYE---HDGFVLVLNGVRE  108 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--~~---I---~~---------~~~~~~~---~~gs~L~I~~v~~  108 (940)
                      ...|....+.+|++|+|.|.... ....+.|||..  +.   |   ..         .......   .....|.|.+++.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            34577788999999999999753 23579999732  11   0   00         0111111   1223489999999


Q ss_pred             CCCeEEEEEEEeCCC
Q psy11143        109 SDAGVYNCVAQNSEG  123 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g  123 (940)
                      +|+|.|.|.+....+
T Consensus        81 ~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          81 SHTSQYLCASSENIG   95 (112)
T ss_dssp             TTCSEEEEEEECSSS
T ss_pred             cccccEEEEEecCCC
Confidence            999999998875543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.93  E-value=0.0011  Score=59.60  Aligned_cols=73  Identities=18%  Similarity=0.326  Sum_probs=47.6

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CE---ee---cC----------CCCeEEEe----eceEEEEc
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GN---SL---DS----------DDHVTYEH----DGFVLVLN  104 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~---~I---~~----------~~~~~~~~----~gs~L~I~  104 (940)
                      ...|..+++.+|++|+|.|.+.+..  ...+.|||.  |+   .|   ..          ..+..+..    +...|.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3445567788999999999986532  346899983  11   11   00          11222221    12458999


Q ss_pred             ccccCCCeEEEEEEEeC
Q psy11143        105 GVRESDAGVYNCVAQNS  121 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~  121 (940)
                      +++.+|+|.|.|.....
T Consensus        85 ~l~~~Dsa~YyCA~~~~  101 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGEG  101 (120)
T ss_dssp             SCCGGGCSEEEEEECCT
T ss_pred             ccccccceeEEEEEcCC
Confidence            99999999999987543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.92  E-value=0.0018  Score=56.21  Aligned_cols=75  Identities=17%  Similarity=0.344  Sum_probs=46.5

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeecc-CC-CeEEEEECCEeecCCC---CeEEEeece-----EEEEcccccCCCeEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLNGVRESDAGVY  114 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~---~~~~~~~gs-----~L~I~~v~~~DsG~Y  114 (940)
                      +|.+.+.|... +..|+.++|.|.+.|. |. ..|+|++||+.+..+.   ......+++     .|.+   ...+...|
T Consensus         5 ~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~y   80 (101)
T d1fnga1           5 APEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFY   80 (101)
T ss_dssp             CCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCE
T ss_pred             CCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEE
Confidence            55554433221 3467889999999984 53 4999999999886421   111122332     2344   34556689


Q ss_pred             EEEEEeCCC
Q psy11143        115 NCVAQNSEG  123 (940)
Q Consensus       115 tC~a~n~~g  123 (940)
                      +|.+.+..-
T Consensus        81 tC~V~H~sl   89 (101)
T d1fnga1          81 DCEVDHWGL   89 (101)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEEECCC
Confidence            999998754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0016  Score=57.03  Aligned_cols=71  Identities=17%  Similarity=0.428  Sum_probs=44.7

Q ss_pred             eEEecCCeEEEEEEEeeeC---CCeEE--EEECCeec----------C------CCCceEEeecCeEEEEeeeccCCCeE
Q psy11143        239 TTYSTGSTSRITCLVEGHP---LPQMT--WFHDGNSL----------D------SDDHVTYEHDGFVLVLNGVRESDAGV  297 (940)
Q Consensus       239 ~~v~~G~~v~L~C~v~G~P---~p~It--W~k~g~~l----------~------~~~~~~~~~~g~sL~I~~v~~~DsG~  297 (940)
                      +....|++++|.|.....+   ...+.  |.++....          .      ...+.....+..+|+|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            4567899999999875422   22333  44433211          0      11122333445579999999999999


Q ss_pred             EEEEEEeCCCCc
Q psy11143        298 YNCVAQNSEGSA  309 (940)
Q Consensus       298 YtC~A~N~~Gs~  309 (940)
                      |.|.+.......
T Consensus        84 Y~C~V~~~~~~~   95 (110)
T d1ncna_          84 YQCIIHHKKPTG   95 (110)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEecCCCc
Confidence            999997554433

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.0017  Score=57.31  Aligned_cols=72  Identities=19%  Similarity=0.346  Sum_probs=49.2

Q ss_pred             CCcEEEecCCeEEEEEEeecc--CCCeEEEEEC--CE----eecC-----------CCCeEEEee----ceEEEEccccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGH--PLPQMTWFHD--GN----SLDS-----------DDHVTYEHD----GFVLVLNGVRE  108 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~--P~p~V~W~kd--g~----~I~~-----------~~~~~~~~~----gs~L~I~~v~~  108 (940)
                      .+...+.+|++++|.|..++.  ....+.|+|.  |+    .+..           ..++.+..+    ...|+|.+++.
T Consensus         2 e~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           2 EERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV   81 (110)
T ss_dssp             CEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc
Confidence            345778999999999998753  4457889984  22    1111           113334321    13489999999


Q ss_pred             CCCeEEEEEEEeCCC
Q psy11143        109 SDAGVYNCVAQNSEG  123 (940)
Q Consensus       109 ~DsG~YtC~a~n~~g  123 (940)
                      +|+|.|.|.......
T Consensus        82 eDsa~YyCa~~~~~~   96 (110)
T d1u9ka_          82 TDSGLYRCVIYHPPN   96 (110)
T ss_dssp             GGCEEEEEEEECTTS
T ss_pred             CCCEEEEEEEeCCCC
Confidence            999999999866544

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0017  Score=56.14  Aligned_cols=75  Identities=17%  Similarity=0.290  Sum_probs=50.2

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC----cE-EEeeeceEEEecCCCCCCeEEEEEEE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR----NH-KIHRTGSLRLYNIGPQDSGLYRCTAS  395 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~----~~-~i~~~~sL~I~~v~~~D~G~YtC~A~  395 (940)
                      ..|.+...|.. .+..|++|+|.|... .....+.++|+|.......    .. .......+.|.+++..|+|+|+|.-.
T Consensus         3 pkPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2           3 IKPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            46888888854 589999999999965 3455888999886432111    00 01123469999999999999999875


Q ss_pred             eC
Q psy11143        396 NL  397 (940)
Q Consensus       396 N~  397 (940)
                      ..
T Consensus        81 ~~   82 (98)
T d1ugna2          81 DS   82 (98)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.0018  Score=57.71  Aligned_cols=69  Identities=16%  Similarity=0.232  Sum_probs=45.2

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCC---eEEEEEC--CEee------c---------CCCCeEEE--eeceEEEEcccccC
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLP---QMTWFHD--GNSL------D---------SDDHVTYE--HDGFVLVLNGVRES  109 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p---~V~W~kd--g~~I------~---------~~~~~~~~--~~gs~L~I~~v~~~  109 (940)
                      |..+.+.+|++|+|.|...+....   .+.|||.  |+..      .         ........  .+...|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            556678899999999998543222   4789983  2211      0         00011111  22346899999999


Q ss_pred             CCeEEEEEEEe
Q psy11143        110 DAGVYNCVAQN  120 (940)
Q Consensus       110 DsG~YtC~a~n  120 (940)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998864

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.86  E-value=0.0015  Score=55.80  Aligned_cols=61  Identities=20%  Similarity=0.316  Sum_probs=43.6

Q ss_pred             CCeEEEEEeecCcCCCeEEEEeC--Ce---ee--------ccCCcEEEee-----eceEEEecCCCCCCeEEEEEEEeC
Q psy11143        337 GSSVEIPCKPDGEPLPRISWSKD--EA---EF--------VEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       337 G~~vtL~C~v~g~P~p~i~W~k~--g~---~i--------~~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      |++|+|.|.........+.|+|.  +.   .|        ....++....     ..+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78999999988777779999972  11   11        1123444332     236999999999999999988753

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0012  Score=59.11  Aligned_cols=70  Identities=11%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             cCCceeecCCCcEEEEEEeCC----C---CCCeEEEeeCCeecc-----------------ccCceEEee-----eceEE
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDG----E---PLPRISWSKDEAEFV-----------------EDRNHKIHR-----TGSLR  194 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g----~---P~p~ItW~k~g~~i~-----------------~~~~~~~~~-----~~sL~  194 (940)
                      .+..+++.+|++|+|.|....    .   ....+.|++....-.                 ...+..+..     +.+|.
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            356788999999999998742    1   123578987432110                 012333322     33699


Q ss_pred             EeecccCCCceEEEEEEcC
Q psy11143        195 LYNIGPQDSGLYRCTASNL  213 (940)
Q Consensus       195 I~~v~~~DsG~YtC~a~N~  213 (940)
                      |.+++.+|+|.|.|.+...
T Consensus        87 I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ECCCChHHCEEEEEEEEeC
Confidence            9999999999999999753

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.85  E-value=0.0009  Score=57.70  Aligned_cols=75  Identities=13%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe-EEE--eeceEEEEcccccCCCeEEEEEEEeC
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-TYE--HDGFVLVLNGVRESDAGVYNCVAQNS  121 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~-~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~  121 (940)
                      +|.+...|. ..|..|++|+|.|.... ....+.++|+|......... ...  .+...+.|.+|+.+|+|.|+|.....
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            467777774 45889999999999653 44588999987532111000 111  22345899999999999999987654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.82  E-value=0.0012  Score=58.15  Aligned_cols=68  Identities=21%  Similarity=0.414  Sum_probs=48.1

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---ec---------cCCcEEEeee---ceEEEecCCCCCCeEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---FV---------EDRNHKIHRT---GSLRLYNIGPQDSGLYR  391 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i~---------~~~~~~i~~~---~sL~I~~v~~~D~G~Yt  391 (940)
                      |..+.+.+|++|+|.|.........+.|++-  |..   +.         -..++.....   ..|.|.+++.+|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            5567788999999999886555557889872  221   11         1134444432   37999999999999999


Q ss_pred             EEEEe
Q psy11143        392 CTASN  396 (940)
Q Consensus       392 C~A~N  396 (940)
                      |.+.-
T Consensus        86 CA~~~   90 (108)
T d1nfde1          86 CLSSY   90 (108)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            98764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.81  E-value=0.0022  Score=55.32  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=41.2

Q ss_pred             ecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC---CeEEEeeceE--EEEcccccCCCeEEEEEEEeCCCc
Q psy11143         58 STGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~---~~~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ..++..+|.|.+.| +|. ..|+|++||..+....   ......+++.  +....+..++...|+|.|.+..-.
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCS
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCC
Confidence            34667789999998 444 4999999999875421   1111223322  233345677888999999987543

>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=7.7e-05  Score=83.90  Aligned_cols=27  Identities=26%  Similarity=0.551  Sum_probs=22.5

Q ss_pred             CCcccc--cchhhhccccccccCCCcCCCc
Q psy11143        681 HPMWGA--SLTGFRRLLKPIYENGFSTPVA  708 (940)
Q Consensus       681 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  708 (940)
                      -+.|++  .+|.|+|+|||.|+||.+ |.|
T Consensus        64 y~sw~~~~~~t~y~R~LPP~~~d~~~-p~~   92 (511)
T d1cvua1          64 YKSWEAFSNLSYYTRALPPVADDCPT-PMG   92 (511)
T ss_dssp             SCCHHHHHCTTBCBBSSCCCCTTCSB-TTB
T ss_pred             CCChhhcccccchhccCCCCCcCCCC-CCc
Confidence            355666  789999999999999995 777

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.80  E-value=0.0015  Score=57.73  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=47.9

Q ss_pred             CCceeecCCCeEEEEEeecCcC--CCeEEEEeC--Ce---ee---------ccCCcEEEeee---ceEEEecCCCCCCeE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEP--LPRISWSKD--EA---EF---------VEDRNHKIHRT---GSLRLYNIGPQDSGL  389 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~--g~---~i---------~~~~~~~i~~~---~sL~I~~v~~~D~G~  389 (940)
                      |..+.+.+|++|+|.|...+.-  ...+.|++.  +.   .+         ....++....+   .+|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            4467889999999999876543  346999962  11   11         01234444332   379999999999999


Q ss_pred             EEEEEEeC
Q psy11143        390 YRCTASNL  397 (940)
Q Consensus       390 YtC~A~N~  397 (940)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99988654

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.79  E-value=0.0025  Score=54.19  Aligned_cols=62  Identities=19%  Similarity=0.370  Sum_probs=41.0

Q ss_pred             cCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeEEE--eece-----EEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         59 TGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVTYE--HDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~~~--~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      .+..++|.|.+.| +|. ..|+|++||..+.... ....  .+++     .|.+   ..++...|+|++.+..-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEV---KRGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence            3458999999999 454 4999999998875432 2211  2222     2344   345667899999986543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.79  E-value=0.0025  Score=56.38  Aligned_cols=75  Identities=19%  Similarity=0.344  Sum_probs=51.1

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEee---c---CC--------CCeEEE---eeceEEEEcccc
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSL---D---SD--------DHVTYE---HDGFVLVLNGVR  107 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I---~---~~--------~~~~~~---~~gs~L~I~~v~  107 (940)
                      .+...|....+.+|++|+|.|...+.....+.|||.  |+.+   -   ..        ...++.   .+...|.|....
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~   82 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence            345667788899999999999986655568999984  2211   0   00        011222   233457899999


Q ss_pred             cCCCeEEEEEEEeC
Q psy11143        108 ESDAGVYNCVAQNS  121 (940)
Q Consensus       108 ~~DsG~YtC~a~n~  121 (940)
                      .+|++.|.|.+...
T Consensus        83 ~~dsa~Y~Ca~~~~   96 (112)
T d1fo0b_          83 MSQGRTLYCTCSAD   96 (112)
T ss_dssp             CCSCEEEEEEEESS
T ss_pred             ccCCccEEEEEecC
Confidence            99999999997543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0012  Score=58.97  Aligned_cols=70  Identities=19%  Similarity=0.282  Sum_probs=45.7

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCC---eEEEEECC--Ee---ec----C------CCC----eEEEeeceEEEEccccc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDG--NS---LD----S------DDH----VTYEHDGFVLVLNGVRE  108 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p---~V~W~kdg--~~---I~----~------~~~----~~~~~~gs~L~I~~v~~  108 (940)
                      +|..+.+.+|++|+|.|........   .+.|||..  +.   +.    .      ..+    ...+.+...|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            3556778899999999998543222   58899742  11   10    0      000    11112234689999999


Q ss_pred             CCCeEEEEEEEe
Q psy11143        109 SDAGVYNCVAQN  120 (940)
Q Consensus       109 ~DsG~YtC~a~n  120 (940)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998864

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.78  E-value=0.0015  Score=57.45  Aligned_cols=71  Identities=20%  Similarity=0.452  Sum_probs=48.8

Q ss_pred             eeCCCeeEEecCCeEEEEEEEeee-CCCeEEEEEC--Ceec------------CCCCceEEeec--CeEEEEeeeccCCC
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHD--GNSL------------DSDDHVTYEHD--GFVLVLNGVRESDA  295 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~-P~p~ItW~k~--g~~l------------~~~~~~~~~~~--g~sL~I~~v~~~Ds  295 (940)
                      ...|..+.+.+|++++|.|..... ....+.||+.  |...            ....++....+  ...|.|.+++.+|+
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            355777889999999999987643 3446889984  2211            11123333322  23599999999999


Q ss_pred             eEEEEEEE
Q psy11143        296 GVYNCVAQ  303 (940)
Q Consensus       296 G~YtC~A~  303 (940)
                      |.|.|.+.
T Consensus        85 a~YyCa~~   92 (108)
T d2fx7l1          85 AVYYCQQY   92 (108)
T ss_dssp             SEEEEEEC
T ss_pred             EEEeeecC
Confidence            99999764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.75  E-value=0.0016  Score=57.56  Aligned_cols=71  Identities=13%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             EcCCceeecCCCeEEEEEeecCc----CCCeEEEEeC--Ce---eec---------cCCcEEEee---eceEEEecCCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGE----PLPRISWSKD--EA---EFV---------EDRNHKIHR---TGSLRLYNIGPQ  385 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~----P~p~i~W~k~--g~---~i~---------~~~~~~i~~---~~sL~I~~v~~~  385 (940)
                      ..|..+.+.+|++|+|.|.....    -...+.|++.  |.   .+.         ...++....   +..|.|.++..+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   85 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc
Confidence            44666778899999999987532    2235999973  22   111         112333332   237999999999


Q ss_pred             CCeEEEEEEEeC
Q psy11143        386 DSGLYRCTASNL  397 (940)
Q Consensus       386 D~G~YtC~A~N~  397 (940)
                      |+|.|.|.+.+.
T Consensus        86 Dsa~YyCa~~~~   97 (111)
T d1j05a_          86 DVATYYCQQTNE   97 (111)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCccEEEeecCC
Confidence            999999977653

>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=96.75  E-value=6.3e-05  Score=84.70  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=19.3

Q ss_pred             cCCCc-eecccccccceecCCCCC
Q psy11143        879 TPDPV-ITHMVMQWGQFLDHDLDH  901 (940)
Q Consensus       879 ~~~~~-~~~~~~~~~~~~~~~~~~  901 (940)
                      .|++. +|+|+|+|+||++||+-.
T Consensus       115 ~p~~~~~s~m~~~~aQ~i~HD~f~  138 (511)
T d1q4ga1         115 IPDPQGTNLMFAFFAQHFTHQFFK  138 (511)
T ss_dssp             CBCTTCBBHHHHHHHHHHHTTTCC
T ss_pred             CCCCCchHHHHHHHHHHHHHHhhc
Confidence            36654 899999999999999854

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.74  E-value=6.7e-05  Score=65.10  Aligned_cols=70  Identities=16%  Similarity=0.485  Sum_probs=46.5

Q ss_pred             cEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeec------------CCCCeEEE----eeceEEEEcccccCCCeEEE
Q psy11143         54 STTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLD------------SDDHVTYE----HDGFVLVLNGVRESDAGVYN  115 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~------------~~~~~~~~----~~gs~L~I~~v~~~DsG~Yt  115 (940)
                      ..+|.+|++|+|.|..+. ....+.|||.  |+...            ...++++.    .....|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            356889999999998754 3347999973  22110            11122222    11234899999999999999


Q ss_pred             EEEEeCCCc
Q psy11143        116 CVAQNSEGS  124 (940)
Q Consensus       116 C~a~n~~g~  124 (940)
                      |.+....|.
T Consensus        81 CA~~~~~g~   89 (96)
T d1ymmd1          81 CATDTTSGT   89 (96)
T ss_dssp             EEEEETTSC
T ss_pred             EeEecCCCC
Confidence            998765543

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0089  Score=50.85  Aligned_cols=67  Identities=22%  Similarity=0.422  Sum_probs=44.6

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEEee--cCe--EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTYEH--DGF--VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~~~--~g~--sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .|+.++|.|.+.|+ |.. .|+|++||..+..........  +++  ......+...+...|+|++.+.....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~~   86 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQ   86 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCCC
Confidence            57889999999995 543 899999999876443322222  222  13333445666678999999875443

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.74  E-value=0.0023  Score=56.53  Aligned_cols=70  Identities=16%  Similarity=0.314  Sum_probs=48.4

Q ss_pred             CCceeecCCCeEEEEEeecCcC---CCeEEEEeC--Ce---ee---------ccCCcEEEee---eceEEEecCCCCCCe
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEP---LPRISWSKD--EA---EF---------VEDRNHKIHR---TGSLRLYNIGPQDSG  388 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P---~p~i~W~k~--g~---~i---------~~~~~~~i~~---~~sL~I~~v~~~D~G  388 (940)
                      |..+.+.+|++|+|.|...+..   ...+.|++.  +.   .+         ....++....   ..+|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            5567889999999999977542   346899972  11   11         0122333332   336999999999999


Q ss_pred             EEEEEEEeCC
Q psy11143        389 LYRCTASNLL  398 (940)
Q Consensus       389 ~YtC~A~N~~  398 (940)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999887543

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0012  Score=57.52  Aligned_cols=65  Identities=14%  Similarity=0.306  Sum_probs=43.5

Q ss_pred             cCCeEEEEEEeecc-CC-CeEEEEECCEeecCCCC---eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         59 TGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDH---VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        59 eGesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~---~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      .+..++|.|.+.|. |. .+|+|++||+.+.....   .....+|     +.|.|..-.......|+|.|.+...
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            45688999999984 43 48999999998753211   1111223     2356665555667899999998653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.72  E-value=0.0044  Score=54.49  Aligned_cols=72  Identities=18%  Similarity=0.307  Sum_probs=48.9

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce-e--ec----------c--CCcEEEee----eceEEEecCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA-E--FV----------E--DRNHKIHR----TGSLRLYNIG  383 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~-~--i~----------~--~~~~~i~~----~~sL~I~~v~  383 (940)
                      +...|..+.+.+|++|+|.|...+ ....+.|+|-  |. +  +.          .  ..++....    ...|.|.++.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            445577778899999999998764 3568999972  21 1  10          0  11221111    2369999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy11143        384 PQDSGLYRCTASNL  397 (940)
Q Consensus       384 ~~D~G~YtC~A~N~  397 (940)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          83 PSQTSVYFCASGGG   96 (110)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             HhhCEEEEEeeCCC
Confidence            99999999987653

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0026  Score=55.80  Aligned_cols=71  Identities=23%  Similarity=0.294  Sum_probs=47.3

Q ss_pred             cCCceeecCCCeEEEEEeecC---cCC---CeEEEEeCCe----ee-----------ccCCcEEEee-----eceEEEec
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDG---EPL---PRISWSKDEA----EF-----------VEDRNHKIHR-----TGSLRLYN  381 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g---~P~---p~i~W~k~g~----~i-----------~~~~~~~i~~-----~~sL~I~~  381 (940)
                      .|..+.+.+|++|+|.|....   .+.   -.+.|++...    .+           ....++.+..     +.+|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            356778999999999998752   111   2566776421    11           0123444432     34799999


Q ss_pred             CCCCCCeEEEEEEEeCC
Q psy11143        382 IGPQDSGLYRCTASNLL  398 (940)
Q Consensus       382 v~~~D~G~YtC~A~N~~  398 (940)
                      ++.+|+|.|.|.+....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999997653

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.68  E-value=0.0026  Score=56.42  Aligned_cols=71  Identities=14%  Similarity=0.304  Sum_probs=48.7

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcC-----CCeEEEEeC--Ce---ee---------ccCCcEEEeee---ceEEEecCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEP-----LPRISWSKD--EA---EF---------VEDRNHKIHRT---GSLRLYNIG  383 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P-----~p~i~W~k~--g~---~i---------~~~~~~~i~~~---~sL~I~~v~  383 (940)
                      ...|..+.+.+|++|+|.|...+..     ...+.|++.  |.   .+         ....++.....   .+|.|.++.
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   85 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence            4456677899999999999976432     247899863  21   11         11234444332   379999999


Q ss_pred             CCCCeEEEEEEEe
Q psy11143        384 PQDSGLYRCTASN  396 (940)
Q Consensus       384 ~~D~G~YtC~A~N  396 (940)
                      .+|+|.|.|...+
T Consensus        86 ~~DsavYyCa~~~   98 (113)
T d1n4xl_          86 AEDLGIYYCFQGS   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCEEEEEEECC
Confidence            9999999996554

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.66  E-value=0.0031  Score=54.50  Aligned_cols=78  Identities=19%  Similarity=0.323  Sum_probs=46.7

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeecc-CC-CeEEEEECCEeecCCC---CeEEEeeceE--EEEcccccCCCeEEEEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCV  117 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~---~~~~~~~gs~--L~I~~v~~~DsG~YtC~  117 (940)
                      +|.+.+.+.. .+..|+..+|.|.+.|. |. ..|+|++||+.+..+.   ......+++.  .....+..++...|+|+
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   83 (99)
T d1uvqa1           5 VPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCK   83 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEE
Confidence            4544443222 13567889999999994 43 4899999999886421   1111223321  11222344566789999


Q ss_pred             EEeCCC
Q psy11143        118 AQNSEG  123 (940)
Q Consensus       118 a~n~~g  123 (940)
                      |.+..-
T Consensus        84 V~H~sl   89 (99)
T d1uvqa1          84 VEHWGL   89 (99)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            998643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.65  E-value=0.0047  Score=54.38  Aligned_cols=69  Identities=22%  Similarity=0.392  Sum_probs=47.4

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce---ee----------c---cCCcEEEeee----ceEEEecCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA---EF----------V---EDRNHKIHRT----GSLRLYNIGP  384 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~---~i----------~---~~~~~~i~~~----~sL~I~~v~~  384 (940)
                      ..|..+.+.+|++|+|.|...+. ...+.|++-  |.   .+          .   ...++.....    .+|+|.++..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            34666778999999999986543 458999862  21   11          0   1233443331    3699999999


Q ss_pred             CCCeEEEEEEEe
Q psy11143        385 QDSGLYRCTASN  396 (940)
Q Consensus       385 ~D~G~YtC~A~N  396 (940)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (111)
T d2esve1          83 EDSGVYFCASSQ   94 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCceEEEeeeC
Confidence            999999998764

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.002  Score=56.52  Aligned_cols=67  Identities=18%  Similarity=0.366  Sum_probs=43.5

Q ss_pred             cCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeEEE----eec-----eEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         59 TGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVTYE----HDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~~~----~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      .+..++|.|.+.| +|. ..|+|++||..+.........    .+|     +.|.|..-.......|+|.|.+.....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            4678999999988 454 489999999987642111111    222     235555555445678999999865443

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00068  Score=59.51  Aligned_cols=67  Identities=16%  Similarity=0.330  Sum_probs=44.8

Q ss_pred             ecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCC----eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         58 STGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDH----VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~----~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ..++.++|.|.+.+ +|. ..|+|++||..+.....    .....++     +.|.|..-.......|+|.|.+....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            45678999999988 453 59999999998754221    1111222     23566655556667899999986543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.0058  Score=49.90  Aligned_cols=80  Identities=26%  Similarity=0.479  Sum_probs=54.6

Q ss_pred             cEEEecCCeEEEEEEeec-cCCCeEEEEEC-CE---eecCCCCe--EEEee----ceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         54 STTYSTGSTSRITCLVEG-HPLPQMTWFHD-GN---SLDSDDHV--TYEHD----GFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        54 ~~~V~eGesv~L~C~v~g-~P~p~V~W~kd-g~---~I~~~~~~--~~~~~----gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      ..++..|+.+.|.|.+.- ...|.|+|-|- |.   ++......  .....    -..|.+..+..+|.|.|+|.|....
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            456889999999999964 45678999763 32   23322222  22222    2358999999999999999998877


Q ss_pred             CceEE-EEEEEE
Q psy11143        123 GSAES-VAMIRI  133 (940)
Q Consensus       123 g~~~~-~~~L~V  133 (940)
                      +-.++ ++++.|
T Consensus        92 ~vieSHSvti~V  103 (104)
T d1xaua_          92 QVINSHSVTIHV  103 (104)
T ss_dssp             EEEECCCEEEEE
T ss_pred             hheecceEEEEe
Confidence            66555 444443

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.62  E-value=0.0026  Score=56.24  Aligned_cols=70  Identities=27%  Similarity=0.486  Sum_probs=47.3

Q ss_pred             eeCCCeeEEecCCeEEEEEEEeee-----CCCeEEEEEC--Ceec------------CCCCceEEeecC--eEEEEeeec
Q psy11143        233 IQRPVSTTYSTGSTSRITCLVEGH-----PLPQMTWFHD--GNSL------------DSDDHVTYEHDG--FVLVLNGVR  291 (940)
Q Consensus       233 ~~~p~~~~v~~G~~v~L~C~v~G~-----P~p~ItW~k~--g~~l------------~~~~~~~~~~~g--~sL~I~~v~  291 (940)
                      +..|..+.+.+|++|+|.|...+.     ....+.||+.  |...            ....++....++  ..|.|.+++
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~   84 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE   84 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc
Confidence            445677888999999999988653     2346899973  2211            111233333322  359999999


Q ss_pred             cCCCeEEEEEE
Q psy11143        292 ESDAGVYNCVA  302 (940)
Q Consensus       292 ~~DsG~YtC~A  302 (940)
                      .+|++.|.|..
T Consensus        85 ~~DsAvYyCa~   95 (112)
T d1mjul1          85 AEDVGVYYCLQ   95 (112)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccCCceEEEEe
Confidence            99999999953

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.59  E-value=0.0038  Score=55.88  Aligned_cols=72  Identities=19%  Similarity=0.339  Sum_probs=49.9

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcC--CCeEEEEeC--Ce--e-ec---------cCCcEEEee-----eceEEEecCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKD--EA--E-FV---------EDRNHKIHR-----TGSLRLYNIG  383 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~--g~--~-i~---------~~~~~~i~~-----~~sL~I~~v~  383 (940)
                      ++..+..+.+.+|++++|.|...+..  ...+.|++.  |.  . +.         ...++....     ...|.|.++.
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34455567788999999999988654  347999972  21  1 10         113454433     2379999999


Q ss_pred             CCCCeEEEEEEEe
Q psy11143        384 PQDSGLYRCTASN  396 (940)
Q Consensus       384 ~~D~G~YtC~A~N  396 (940)
                      .+|+|.|.|....
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999998655

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.59  E-value=0.0065  Score=52.23  Aligned_cols=67  Identities=19%  Similarity=0.387  Sum_probs=42.1

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeecCe--EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHDGF--VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .++..+|.|.+.|+ |.. .|+|++||..+..+..   .....+|+  .+....+...+...|+|++.+.....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~~   90 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS   90 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCCC
Confidence            46667899999995 433 8999999998864321   12223332  13333456677889999999976543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.55  E-value=0.0035  Score=55.43  Aligned_cols=73  Identities=18%  Similarity=0.360  Sum_probs=48.5

Q ss_pred             EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce-e--ec--cC-----CcE-EE-----eeeceEEEecCCCCCC
Q psy11143        326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA-E--FV--ED-----RNH-KI-----HRTGSLRLYNIGPQDS  387 (940)
Q Consensus       326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~-~--i~--~~-----~~~-~i-----~~~~sL~I~~v~~~D~  387 (940)
                      ...|..+.+.+|++|+|.|..... ...+.|++-  +. .  +.  .+     ... ..     ....+|.|.++..+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            345667788999999999998753 457999972  21 1  10  00     000 00     0123699999999999


Q ss_pred             eEEEEEEEeCCe
Q psy11143        388 GLYRCTASNLLG  399 (940)
Q Consensus       388 G~YtC~A~N~~G  399 (940)
                      |.|.|.+....+
T Consensus        84 a~YyCa~~~~~~   95 (113)
T d1h5ba_          84 GTYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEecCCCC
Confidence            999998876443

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.54  E-value=0.0027  Score=54.50  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC---CcEE-EeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143        322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED---RNHK-IHRTGSLRLYNIGPQDSGLYRCTASNL  397 (940)
Q Consensus       322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~---~~~~-i~~~~sL~I~~v~~~D~G~YtC~A~N~  397 (940)
                      .|.+...|. ..+..|++|+|.|... .....+.++|+|......   .... ......+.|.+++..|+|+|+|.-...
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            477777774 4688999999999975 445689999987532110   0000 012346999999999999999987543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0094  Score=50.79  Aligned_cols=65  Identities=22%  Similarity=0.404  Sum_probs=42.7

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCC----ceEEeecCe--EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD----HVTYEHDGF--VLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~----~~~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .++.++|.|.+.|+ |.. .|+|++||..+....    ......+++  ....-.+...+...|+|++.+...
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            46678999999995 554 999999999885331    112222332  123334455666789999998743

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0017  Score=56.76  Aligned_cols=70  Identities=16%  Similarity=0.318  Sum_probs=45.4

Q ss_pred             ecCCeEEEEEEEeee-CC-CeEEEEECCeecCCCCce----EEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        242 STGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDHV----TYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~~~----~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      ..++.++|.|.+.|+ |. ..|+|++||..+......    ....+|.     .|.|..-.......|+|.+.+......
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~~   96 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASPS   96 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTTT
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCCC
Confidence            346789999999985 43 499999999987643211    1122222     255554444555689999998765443


Q ss_pred             e
Q psy11143        311 S  311 (940)
Q Consensus       311 ~  311 (940)
                      .
T Consensus        97 ~   97 (105)
T d1fp5a2          97 Q   97 (105)
T ss_dssp             T
T ss_pred             e
Confidence            3

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.50  E-value=0.0079  Score=52.20  Aligned_cols=70  Identities=9%  Similarity=0.260  Sum_probs=44.9

Q ss_pred             EecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeEEE--eeceEEEE--cccccCCCeEEEEEEEeCCCceE
Q psy11143         57 YSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVTYE--HDGFVLVL--NGVRESDAGVYNCVAQNSEGSAE  126 (940)
Q Consensus        57 V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I--~~v~~~DsG~YtC~a~n~~g~~~  126 (940)
                      +..|+..+|.|.+.| +|. ..|+|++||..+.........  .+++.-..  ..+..+|...|+|.|.+..-...
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l~~p   90 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPDRYT   90 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTTTEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCCCCC
Confidence            356888999999999 453 489999999987543332222  33322111  12345566689999999855433

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0059  Score=54.17  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=44.0

Q ss_pred             CCceeecCCCeEEEEEeecCcCCC---eEEEEeC--Cee--ec------------cCCcE-EEe---eeceEEEecCCCC
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLP---RISWSKD--EAE--FV------------EDRNH-KIH---RTGSLRLYNIGPQ  385 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p---~i~W~k~--g~~--i~------------~~~~~-~i~---~~~sL~I~~v~~~  385 (940)
                      |..+.+.+|++|+|.|.....-.+   .+.|++.  |..  +.            .+... ...   ...+|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            445677889999999997543333   4789973  221  10            01111 111   1237999999999


Q ss_pred             CCeEEEEEEEe
Q psy11143        386 DSGLYRCTASN  396 (940)
Q Consensus       386 D~G~YtC~A~N  396 (940)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.004  Score=54.02  Aligned_cols=81  Identities=12%  Similarity=0.193  Sum_probs=49.5

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeeccCCc---EE------EeeeceEEEecCCCCCCeE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDRN---HK------IHRTGSLRLYNIGPQDSGL  389 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~~~---~~------i~~~~sL~I~~v~~~D~G~  389 (940)
                      .+|.+.+.+.......+..++|.|.+.|+ |.. .|+|.++|..+..+..   ..      ....+.|.|..-.......
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            45655544332222245679999999987 443 8999999987643211   11      1122346665544455678


Q ss_pred             EEEEEEeCCeeE
Q psy11143        390 YRCTASNLLGED  401 (940)
Q Consensus       390 YtC~A~N~~G~~  401 (940)
                      |+|.|.......
T Consensus        84 ytC~V~H~~~~~   95 (102)
T d1q0xl2          84 YSCQVTHEGHSS   95 (102)
T ss_dssp             EEEEEEETTEEE
T ss_pred             EEEEEEECCccE
Confidence            999999875543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0025  Score=56.35  Aligned_cols=65  Identities=18%  Similarity=0.364  Sum_probs=44.9

Q ss_pred             eeecCCCeEEEEEeecCc--CCCeEEEEeC--Ce---eec------------cCCcEEEeee-----ceEEEecCCCCCC
Q psy11143        332 MRAPAGSSVEIPCKPDGE--PLPRISWSKD--EA---EFV------------EDRNHKIHRT-----GSLRLYNIGPQDS  387 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~--P~p~i~W~k~--g~---~i~------------~~~~~~i~~~-----~sL~I~~v~~~D~  387 (940)
                      ..+.+|++|+|.|...+.  ....+.|+|.  +.   .+.            ..+++.+..+     .+|+|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            567889999999987632  3457889973  21   110            1135555432     2599999999999


Q ss_pred             eEEEEEEEe
Q psy11143        388 GLYRCTASN  396 (940)
Q Consensus       388 G~YtC~A~N  396 (940)
                      |.|.|.+..
T Consensus        89 g~Y~Cav~~   97 (113)
T d1smoa_          89 GLYQCVIYQ   97 (113)
T ss_dssp             EEEEEEECC
T ss_pred             ceEEEEEEC
Confidence            999998754

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.45  E-value=0.0074  Score=51.11  Aligned_cols=67  Identities=21%  Similarity=0.334  Sum_probs=42.1

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEE-eecCeE--EEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTY-EHDGFV--LVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~-~~~g~s--L~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .+..++|.|.+.|+ |.. .|+|.+||..+........ ..+++-  ...-.+...+...|+|++.+.....
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~sL~~   85 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGLAQ   85 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTTSSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCCCCC
Confidence            35678999999995 544 8999999998764422211 222221  1112233456678999999875443

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.44  E-value=0.0095  Score=51.49  Aligned_cols=68  Identities=15%  Similarity=0.329  Sum_probs=43.0

Q ss_pred             EecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeecCe--EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        241 YSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHDGF--VLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      +..|+..+|.|.+.|+ |.. .|+|++||..+..+..   .....+++  ....-.+...+...|+|++.+..-.
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~sl~   90 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLE   90 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTCS
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEECCCC
Confidence            3457788999999996 544 8999999998864321   11222332  1112223345556899999987543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.42  E-value=0.007  Score=54.36  Aligned_cols=68  Identities=15%  Similarity=0.321  Sum_probs=48.0

Q ss_pred             CCceeecCCCeEEEEEeecCcC--CCeEEEEeC--Ce-------------eec----cCCcEEEeee-----ceEEEecC
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEP--LPRISWSKD--EA-------------EFV----EDRNHKIHRT-----GSLRLYNI  382 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~--g~-------------~i~----~~~~~~i~~~-----~sL~I~~v  382 (940)
                      +..+...+|++++|.|.++|..  ...+.|++.  |.             ...    ...++.+...     ..|.|.++
T Consensus         8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l   87 (123)
T d1hxmb1           8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (123)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence            3456778899999999998754  337899872  11             110    1235666542     25999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy11143        383 GPQDSGLYRCTASN  396 (940)
Q Consensus       383 ~~~D~G~YtC~A~N  396 (940)
                      ..+|+|.|.|.+..
T Consensus        88 ~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          88 EKQDIATYYCALWE  101 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCcEEEEeeeC
Confidence            99999999998754

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0051  Score=53.49  Aligned_cols=68  Identities=16%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             cCCCeEEEEEeecC-cCCC-eEEEEeCCeeeccCCcEEE--e------eeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143        335 PAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDRNHKI--H------RTGSLRLYNIGPQDSGLYRCTASNLLGEDV  402 (940)
Q Consensus       335 ~~G~~vtL~C~v~g-~P~p-~i~W~k~g~~i~~~~~~~i--~------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~  402 (940)
                      ..+.+++|.|.+.| +|.. .|+|+++|..+........  .      ..+.|.|..-.......|+|.|.+......
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~   96 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFE   96 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEE
Confidence            45568999999998 4555 8999999988754322111  1      123456654443445679999999865443

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.41  E-value=0.0034  Score=55.38  Aligned_cols=70  Identities=17%  Similarity=0.332  Sum_probs=47.6

Q ss_pred             CCCeeEEecCCeEEEEEEEeeeC-CCeEEEEEC--CeecC------------CCCceEEeecC--eEEEEeeeccCCCeE
Q psy11143        235 RPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHD--GNSLD------------SDDHVTYEHDG--FVLVLNGVRESDAGV  297 (940)
Q Consensus       235 ~p~~~~v~~G~~v~L~C~v~G~P-~p~ItW~k~--g~~l~------------~~~~~~~~~~g--~sL~I~~v~~~DsG~  297 (940)
                      .|..+.+.+|++|+|.|...+.. ...+.||+.  |+.+.            ...+..+..+.  ..|.|.++..+|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            46678889999999999986543 345899983  32211            01122222222  349999999999999


Q ss_pred             EEEEEEe
Q psy11143        298 YNCVAQN  304 (940)
Q Consensus       298 YtC~A~N  304 (940)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9998754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.41  E-value=0.0095  Score=51.16  Aligned_cols=69  Identities=20%  Similarity=0.338  Sum_probs=44.5

Q ss_pred             EecCCeEEEEEEEeee-C-CCeEEEEECCeecCCCCc---eEEeecCeE--EEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        241 YSTGSTSRITCLVEGH-P-LPQMTWFHDGNSLDSDDH---VTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~-P-~p~ItW~k~g~~l~~~~~---~~~~~~g~s--L~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ...++.++|.|.+.|+ | ...|+|++||..+..+..   .....+++-  ...-.+...+...|+|.+.+.....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~~   89 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPE   89 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCCC
Confidence            3457789999999996 4 338999999998864322   222233331  1112344556668999999975543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0014  Score=57.01  Aligned_cols=78  Identities=15%  Similarity=0.275  Sum_probs=47.0

Q ss_pred             CCeEEeCCCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC---CeEEEeec-----eEEEEcccccCCCeEE
Q psy11143         45 PPIFIQRPVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD---HVTYEHDG-----FVLVLNGVRESDAGVY  114 (940)
Q Consensus        45 pP~~~~~p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~---~~~~~~~g-----s~L~I~~v~~~DsG~Y  114 (940)
                      +|.+.+.+....-..+..++|.|.+.| +|. ..|+|++||..+....   ......+|     +.|.|..-.......|
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEE
Confidence            455444332222224677999999998 443 3899999999876431   11111222     2355554444445679


Q ss_pred             EEEEEeCC
Q psy11143        115 NCVAQNSE  122 (940)
Q Consensus       115 tC~a~n~~  122 (940)
                      +|.|.+..
T Consensus        85 tC~V~H~~   92 (102)
T d1rzfl2          85 SCQVTHEG   92 (102)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99999874

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0039  Score=54.55  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=43.6

Q ss_pred             cCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeEEE----eec-----eEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143         59 TGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVTYE----HDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA  125 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~~~----~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~  125 (940)
                      .++.++|.|.+.| +|. ..|+|++||..+.........    .+|     +.|.|..-.......|+|.|.+.....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~   96 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS   96 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            4678999999998 454 489999999876532111111    122     235665555455668999999875543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0049  Score=52.67  Aligned_cols=70  Identities=16%  Similarity=0.233  Sum_probs=52.2

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCCeEE-EEECCEeec-CCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLPQMT-WFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~-W~kdg~~I~-~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .|+.+.+.+|+.+.|.|.++. |..+++ |.+++..+. ....+.++..... +|.+++..+.|.|.|.|....
T Consensus        11 ~p~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf-~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          11 IPEIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWDSRKGF-IISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             SCEEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEETTTEE-EESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEECCCCCE-EEeCCCcccCeEEEEEEEECC
Confidence            355678899999999999985 555554 555666554 4455666644444 999999999999999998663

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.36  E-value=0.0089  Score=52.63  Aligned_cols=71  Identities=17%  Similarity=0.263  Sum_probs=47.2

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---ec------------cCCcEEEee----eceEEEecCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---FV------------EDRNHKIHR----TGSLRLYNIG  383 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i~------------~~~~~~i~~----~~sL~I~~v~  383 (940)
                      +...|..+.+.+|++|+|.|.... -...+.|++-  |..   +.            ...++....    ...|.|.++.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            344566677889999999998653 3457899872  211   00            011222221    2369999999


Q ss_pred             CCCCeEEEEEEEe
Q psy11143        384 PQDSGLYRCTASN  396 (940)
Q Consensus       384 ~~D~G~YtC~A~N  396 (940)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (113)
T d1j8he1          82 TNQTSMYLCASSS   94 (113)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCcccEEeeEcc
Confidence            9999999998874

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0015  Score=57.48  Aligned_cols=79  Identities=16%  Similarity=0.341  Sum_probs=49.9

Q ss_pred             CCeEE-eCCCcEEEecCCeEEEEEEeec-cCCC-eEEEEECCEeecCCCCeEEE-------eec-----eEEEEcccccC
Q psy11143         45 PPIFI-QRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTYE-------HDG-----FVLVLNGVRES  109 (940)
Q Consensus        45 pP~~~-~~p~~~~V~eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~~~~~~-------~~g-----s~L~I~~v~~~  109 (940)
                      +|.+. ..|....+..|+.++|.|.+.+ +|.. .|+|++||+.+.........       .++     +.|.|..-...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            44443 3344444567889999999998 4543 89999999987643221110       122     23555554545


Q ss_pred             CCeEEEEEEEeCCC
Q psy11143        110 DAGVYNCVAQNSEG  123 (940)
Q Consensus       110 DsG~YtC~a~n~~g  123 (940)
                      ....|+|.|.+..-
T Consensus        84 ~g~~ytC~V~H~sl   97 (108)
T d1ow0a2          84 KGDTFSCMVGHEAL   97 (108)
T ss_dssp             HTCCEEEEEECTTC
T ss_pred             CCCEEEEEEEeCCC
Confidence            56789999998653

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.0052  Score=53.76  Aligned_cols=68  Identities=18%  Similarity=0.382  Sum_probs=44.1

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEE----eecCe-----EEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTY----EHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~----~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      .+..++|.|.+.|+ |.. .|+|.+||..+........    ..+|.     .|.|..-.......|+|.+.+......
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~p   97 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP   97 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCCC
Confidence            46789999999985 443 8999999998764321111    12222     255554444456689999998765443

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.28  E-value=0.0063  Score=53.77  Aligned_cols=69  Identities=14%  Similarity=0.309  Sum_probs=46.5

Q ss_pred             cCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ce--e-ec---c---------CCcEEEee----eceEEEecCCCCC
Q psy11143        328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EA--E-FV---E---------DRNHKIHR----TGSLRLYNIGPQD  386 (940)
Q Consensus       328 ~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~--~-i~---~---------~~~~~i~~----~~sL~I~~v~~~D  386 (940)
                      .|..+.+.+|++|+|.|... .....+.|++.  +.  + +.   .         ..++....    ..+|.|.++..+|
T Consensus         5 sP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            45567789999999999976 34568999972  21  1 00   0         11121111    2369999999999


Q ss_pred             CeEEEEEEEeC
Q psy11143        387 SGLYRCTASNL  397 (940)
Q Consensus       387 ~G~YtC~A~N~  397 (940)
                      +|.|.|.+...
T Consensus        84 Sa~YyCa~~~~   94 (114)
T d1ogae1          84 TAFYLCASSSR   94 (114)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeEEEeeccC
Confidence            99999977643

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.018  Score=46.37  Aligned_cols=58  Identities=21%  Similarity=0.374  Sum_probs=41.3

Q ss_pred             EecCCeEEEEEEeeccCC--CeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEE
Q psy11143         57 YSTGSTSRITCLVEGHPL--PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        57 V~eGesv~L~C~v~g~P~--p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~  119 (940)
                      ...|..+.|.|..+..+.  .--.|.|+|+.|......   .....+.|..  .+++|.|.|+..
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~---~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---CSEEEEEECG--GGCCEEEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC---CCceEEEEec--CCCCceEEEEEc
Confidence            357899999999976443  366799999999854322   1222345654  788999999965

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.25  E-value=0.012  Score=50.61  Aligned_cols=67  Identities=19%  Similarity=0.372  Sum_probs=42.9

Q ss_pred             EecCCeEEEEEEEeee-CC-CeEEEEECCeecCCCCc---eEEeecCe--EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        241 YSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDH---VTYEHDGF--VLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       241 v~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~~---~~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      ...|+..+|.|.+.|+ |. ..|+|.+||..+..+..   .....+++  ......+...+...|+|++.+...
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   89 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGL   89 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence            3457788999999996 43 38999999998864321   11222332  112223344556689999998753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0036  Score=54.56  Aligned_cols=66  Identities=26%  Similarity=0.411  Sum_probs=43.4

Q ss_pred             ecCCeEEEEEEeec-cCCC-eEEEEECCEeecCCCCeE--EEeec-----eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         58 STGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVT--YEHDG-----FVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~~~~--~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      ..+.+++|.|.+.+ +|.. .|+|+++|..+.......  ...++     +.|.|..-.......|+|.|.+...
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            34568999999998 5544 899999999876432111  11222     2355555444456779999998753

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.24  E-value=0.011  Score=51.95  Aligned_cols=72  Identities=25%  Similarity=0.380  Sum_probs=48.5

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC----------CCCeEEEee----ceEEEEccc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS----------DDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~----------~~~~~~~~~----gs~L~I~~v  106 (940)
                      ++....+++|++++|.|.++|...  --+.|+|.  |+.      |..          ..++.+..+    ...|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L   85 (116)
T d7fabh1           6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence            344556889999999999998643  36789873  211      111          123444422    234899999


Q ss_pred             ccCCCeEEEEEEEeCC
Q psy11143        107 RESDAGVYNCVAQNSE  122 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~~  122 (940)
                      +.+|++.|.|......
T Consensus        86 ~~eDtAvYyCAr~~~~  101 (116)
T d7fabh1          86 TAADTAVYYCARNLIA  101 (116)
T ss_dssp             CGGGCEEEEEEEECSS
T ss_pred             ccccceEEEeeeecCC
Confidence            9999999999765443

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0023  Score=55.57  Aligned_cols=80  Identities=14%  Similarity=0.204  Sum_probs=47.7

Q ss_pred             cCCeEEEcCCceeecCCCeEEEEEeecCc-CCC-eEEEEeCCeeeccCCc---EEEee------eceEEEecCCCCCCeE
Q psy11143        321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDRN---HKIHR------TGSLRLYNIGPQDSGL  389 (940)
Q Consensus       321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~~~---~~i~~------~~sL~I~~v~~~D~G~  389 (940)
                      .+|.+.+.+....-..+..++|.|.+.|+ |.. .|.|+++|..+..+..   .....      .+.|.|..-.......
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            46666554332222235679999999985 444 8999999987654311   11111      2245554333333556


Q ss_pred             EEEEEEeCCee
Q psy11143        390 YRCTASNLLGE  400 (940)
Q Consensus       390 YtC~A~N~~G~  400 (940)
                      |+|.|......
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1rzfl2          84 YSCQVTHEGST   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999997543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.0051  Score=51.93  Aligned_cols=62  Identities=21%  Similarity=0.373  Sum_probs=40.4

Q ss_pred             ecCCeEEEEEEeecc-CC-CeEEEEECCEeecCCCC---eEEEeece-----EEEEcccccCCCeEEEEEEEeCC
Q psy11143         58 STGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        58 ~eGesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~---~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      ..++.++|.|.+.|. |. ..|+|+++|+.+.....   .....++.     .|.|   ...+...|+|.|.+..
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v---~~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVV---PLGKEQYYTCHVYHQG   84 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEE---ESSTTTTCEEEEECSS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEe---cCcCCCEEEEEEEECC
Confidence            346789999999994 43 38899999998864321   12222332     2344   3445567999998764

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.21  E-value=0.0024  Score=54.93  Aligned_cols=61  Identities=16%  Similarity=0.341  Sum_probs=40.6

Q ss_pred             cCCeEEEEEEeec-cCCC-eEEEEECCEeecCCCC--eEEEeece-----EEEEcccccCCCeEEEEEEEeCC
Q psy11143         59 TGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDH--VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~~--~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      .+..++|.|.+.| +|.. .|+|++++..+.....  .....+|+     .|.|   ..+|...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDV---ADGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE---EGGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEE---eCccCCEEEEEEEeCC
Confidence            4568999999998 5654 8999999987654221  11223332     2344   3456678999999864

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.21  E-value=0.0025  Score=57.74  Aligned_cols=78  Identities=19%  Similarity=0.357  Sum_probs=49.9

Q ss_pred             CCeEEe-CCCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC--------------CeEEEeeceEEEEcccc
Q psy11143         45 PPIFIQ-RPVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD--------------HVTYEHDGFVLVLNGVR  107 (940)
Q Consensus        45 pP~~~~-~p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~--------------~~~~~~~gs~L~I~~v~  107 (940)
                      ||.+.+ .|.......+..++|.|.+.| +|. ..|+|++||+.+....              +..+.. .+.|.|..-.
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~-sS~L~v~~~~   82 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSL-SSRLRVSATF   82 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEE-EEEEEEEHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEE-EEEEEECHHH
Confidence            555443 444444556788999999998 443 3899999999875321              111111 1346776666


Q ss_pred             cCCCe-EEEEEEEeCCC
Q psy11143        108 ESDAG-VYNCVAQNSEG  123 (940)
Q Consensus       108 ~~DsG-~YtC~a~n~~g  123 (940)
                      ..+.| .|+|.|.+...
T Consensus        83 W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             HTCTTCEEEEEEEECCB
T ss_pred             hCCCCCEEEEEEEECCC
Confidence            56756 69999988643

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.21  E-value=0.0076  Score=53.08  Aligned_cols=69  Identities=19%  Similarity=0.331  Sum_probs=47.0

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEe--CCee---ec------------cCCcEEEee----eceEEEecCCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK--DEAE---FV------------EDRNHKIHR----TGSLRLYNIGPQ  385 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k--~g~~---i~------------~~~~~~i~~----~~sL~I~~v~~~  385 (940)
                      ..|..+.+.+|++|+|.|...+. ...+.|++  .+..   +.            ...++....    ..+|.|.++..+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            34556778899999999996543 45899997  2221   10            112222222    226999999999


Q ss_pred             CCeEEEEEEEe
Q psy11143        386 DSGLYRCTASN  396 (940)
Q Consensus       386 D~G~YtC~A~N  396 (940)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCA~~~   93 (113)
T d2ntsp1          83 DSALYLCASSL   93 (113)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceeeeeeeeC
Confidence            99999998764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.20  E-value=0.0029  Score=56.06  Aligned_cols=73  Identities=15%  Similarity=0.327  Sum_probs=48.4

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCC--e---ee---c---------cCCcEEEee----eceEEEecCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--A---EF---V---------EDRNHKIHR----TGSLRLYNIG  383 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g--~---~i---~---------~~~~~~i~~----~~sL~I~~v~  383 (940)
                      +...|..+.+.+|++|+|.|..... ...+.|++..  .   .|   .         ...++....    ..+|.|.++.
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            3445667788999999999986533 4589999732  1   11   0         011222221    2369999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy11143        384 PQDSGLYRCTASNLL  398 (940)
Q Consensus       384 ~~D~G~YtC~A~N~~  398 (940)
                      .+|+|.|.|.+....
T Consensus        83 ~~Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          83 LEDSAMYFCASSLRW   97 (113)
T ss_dssp             GGGCEEECEEEESSS
T ss_pred             cCCceeEEEEeecCC
Confidence            999999999876443

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.18  E-value=0.0063  Score=52.22  Aligned_cols=67  Identities=16%  Similarity=0.327  Sum_probs=40.4

Q ss_pred             ecCCeEEEEEEeecc-C-CCeEEEEECCEeecCCC---CeEEEeeceE--EEEcccccCCCeEEEEEEEeCCCc
Q psy11143         58 STGSTSRITCLVEGH-P-LPQMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        58 ~eGesv~L~C~v~g~-P-~p~V~W~kdg~~I~~~~---~~~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ..|+.++|.|.+.|. | ...|+|++||+++....   ......+++.  .....+..++...|+|.+.+....
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~   87 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ   87 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCS
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCC
Confidence            346778999999984 4 35999999998875421   1111233321  222334567778999999987544

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.17  E-value=0.019  Score=49.63  Aligned_cols=68  Identities=9%  Similarity=0.242  Sum_probs=43.9

Q ss_pred             ecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEE--eecCeEEEE---eeeccCCCeEEEEEEEeCCCCce
Q psy11143        242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTY--EHDGFVLVL---NGVRESDAGVYNCVAQNSEGSAE  310 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~--~~~g~sL~I---~~v~~~DsG~YtC~A~N~~Gs~~  310 (940)
                      ..|+..+|.|.+.|+ |.. .|+|.+||..+........  ..+++ +.+   -.+..++...|+|.+.+..-...
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgt-y~~~S~L~v~~~~~~~ytC~V~H~~l~~p   90 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLS-FQAFSYLNFTPEPSDIFSCIVTHEPDRYT   90 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTE-EEEEEEEEECCCTTCCEEEEEEETTTTEE
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCc-EEEEEEEEEecCCCCEEEEEEEeCCCCCC
Confidence            458888999999995 433 8999999998754333222  22332 222   12344556679999999854443

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0027  Score=55.20  Aligned_cols=80  Identities=19%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             CCeE-EeCCCcEEEecCCeEEEEEEeecc-CC-CeEEEEECCEeecCCCCeEEEeec-----eEEEEcccccCCCeEEEE
Q psy11143         45 PPIF-IQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDHVTYEHDG-----FVLVLNGVRESDAGVYNC  116 (940)
Q Consensus        45 pP~~-~~~p~~~~V~eGesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~~~~~~~g-----s~L~I~~v~~~DsG~YtC  116 (940)
                      +|.+ .+.|.... ..++.++|.|.+.|. |. ..|+|.+++.............+|     +.|.|..-.. +.+.|+|
T Consensus         5 ~PsV~~l~p~~~~-~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC   82 (102)
T d1mjuh2           5 APSVYPLAPVCGD-TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITC   82 (102)
T ss_dssp             CCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEE
T ss_pred             CCEEEEECCCccc-cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEE
Confidence            3444 34444332 457899999999984 43 489997776432111111111222     3356665554 3578999


Q ss_pred             EEEeCCCceE
Q psy11143        117 VAQNSEGSAE  126 (940)
Q Consensus       117 ~a~n~~g~~~  126 (940)
                      .|.+..+...
T Consensus        83 ~V~H~~~~~~   92 (102)
T d1mjuh2          83 NVAHPASSTK   92 (102)
T ss_dssp             EEEEGGGTEE
T ss_pred             EEEECCCCEE
Confidence            9999765543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.15  E-value=0.0057  Score=54.49  Aligned_cols=69  Identities=25%  Similarity=0.452  Sum_probs=45.5

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC----CeEEEEEC--CEe---e---c----------CCCCeEEEee----ceEEEEcc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL----PQMTWFHD--GNS---L---D----------SDDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~----p~V~W~kd--g~~---I---~----------~~~~~~~~~~----gs~L~I~~  105 (940)
                      +....|++|++|+|.|.++|...    ..+.|||.  |+.   +   .          ...++.+..+    ...|.|.+
T Consensus         7 sg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~   86 (120)
T d2agjh1           7 SGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTN   86 (120)
T ss_dssp             CCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEES
T ss_pred             ECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEe
Confidence            33445788999999999987432    35789973  221   0   0          0124444421    24589999


Q ss_pred             cccCCCeEEEEEEEe
Q psy11143        106 VRESDAGVYNCVAQN  120 (940)
Q Consensus       106 v~~~DsG~YtC~a~n  120 (940)
                      ++.+|++.|.|....
T Consensus        87 l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          87 LDPVDTATYYCARTS  101 (120)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             eeeccceEEeeEecC
Confidence            999999999997543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0022  Score=55.70  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             eEEeCCCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeEEEeec-----eEEEEcccccCCCeEEEEEEE
Q psy11143         47 IFIQRPVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQ  119 (940)
Q Consensus        47 ~~~~~p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~  119 (940)
                      .+.+.|.... ..++.++|.|.+.| +|. ..|.|.+++.............+|     +.|.|..-.. +.|.|+|.|.
T Consensus         8 V~~l~p~~~~-~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~   85 (101)
T d1kcvh2           8 VFPLVPGSAT-AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVA   85 (101)
T ss_dssp             EEEECCCSCC-TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEE
T ss_pred             EEeECCCccc-cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEE
Confidence            3344444322 46789999999998 453 489998887543211111111222     2356654444 3678999999


Q ss_pred             eCCCceE
Q psy11143        120 NSEGSAE  126 (940)
Q Consensus       120 n~~g~~~  126 (940)
                      +......
T Consensus        86 H~~~~~~   92 (101)
T d1kcvh2          86 HPKSSTA   92 (101)
T ss_dssp             EGGGTEE
T ss_pred             eCCCCee
Confidence            8765443

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0061  Score=49.76  Aligned_cols=77  Identities=18%  Similarity=0.253  Sum_probs=50.1

Q ss_pred             eeecCCCcEEEEEEeCC-CCCCeEEEee-CCeeccc---c-CceEEee-ec-----eEEEeecccCCCceEEEEEEcCCc
Q psy11143        148 MRAPAGSSVEIPCKPDG-EPLPRISWSK-DEAEFVE---D-RNHKIHR-TG-----SLRLYNIGPQDSGLYRCTASNLLG  215 (940)
Q Consensus       148 ~~v~~Ge~vtL~C~v~g-~P~p~ItW~k-~g~~i~~---~-~~~~~~~-~~-----sL~I~~v~~~DsG~YtC~a~N~~g  215 (940)
                      -.+..|+.+.|+|.+.- ...|.++|-| +|..-..   . ...+.-. ..     .|.+..+-++|.|.|+|.|.-..+
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            46778999999999985 4578999988 5443211   1 1111111 11     378889999999999999975544


Q ss_pred             c-eeeeeeee
Q psy11143        216 E-DVAEGYLT  224 (940)
Q Consensus       216 ~-~s~s~~L~  224 (940)
                      - .+.++.+.
T Consensus        93 vieSHSvti~  102 (104)
T d1xaua_          93 VINSHSVTIH  102 (104)
T ss_dssp             EEECCCEEEE
T ss_pred             heecceEEEE
Confidence            3 23344443

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0039  Score=53.36  Aligned_cols=64  Identities=20%  Similarity=0.348  Sum_probs=39.7

Q ss_pred             CCeEEEEEEeecc-CC-CeEEEEECCEeecCCCCe---EEEeeceE--EEEcccccCCCeEEEEEEEeCCC
Q psy11143         60 GSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDHV---TYEHDGFV--LVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        60 Gesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~~---~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +..++|.|.+.|. |. ..|+|++||+.+......   ....++..  .....+...+...|+|+|.+..-
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence            5689999999994 43 488999999987643211   11122211  11223344555689999998643

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.12  E-value=0.016  Score=51.07  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=48.7

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eec-C----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLD-S----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~-~----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|++++|.|.++|....  .+.|+|.  |+      .|. .          ..++.+..+    ...|.|.
T Consensus         4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~   83 (117)
T d1um5h1           4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS   83 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence            45566778999999999999986543  6789873  21      121 1          123444422    1348999


Q ss_pred             ccccCCCeEEEEEEEe
Q psy11143        105 GVRESDAGVYNCVAQN  120 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n  120 (940)
                      +++.+|++.|.|....
T Consensus        84 sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          84 SLTSEDSAVYYCARSS   99 (117)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccCCCcceEEEEeecc
Confidence            9999999999996543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.10  E-value=0.0074  Score=53.22  Aligned_cols=72  Identities=24%  Similarity=0.518  Sum_probs=48.6

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC-----------CCCeEEEeec----eEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS-----------DDHVTYEHDG----FVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~-----------~~~~~~~~~g----s~L~I~  104 (940)
                      .++....++.|++++|+|.++|...  --+.|+|.  |+.      |..           ..++.++.+.    ..|.|.
T Consensus         5 ~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~   84 (117)
T d1iqdb1           5 VQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeec
Confidence            3445567889999999999998643  35788873  211      111           2244444322    348999


Q ss_pred             ccccCCCeEEEEEEEeC
Q psy11143        105 GVRESDAGVYNCVAQNS  121 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~  121 (940)
                      +++.+|++.|.|.....
T Consensus        85 ~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          85 SLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             SCCGGGCEEEEEEECSS
T ss_pred             ccCcCcceEEEEeEcCC
Confidence            99999999999986543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.10  E-value=0.008  Score=52.86  Aligned_cols=69  Identities=20%  Similarity=0.323  Sum_probs=46.3

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCCCeEEEeeC--Ceecc----------------ccCceEEee----eceEEEeeccc
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFV----------------EDRNHKIHR----TGSLRLYNIGP  200 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~--g~~i~----------------~~~~~~~~~----~~sL~I~~v~~  200 (940)
                      ..|....+.+|++++|.|...+ ....+.|++.  +....                ...++....    ...|.|.++++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            4466778899999999998653 3457999882  22110                011111111    23599999999


Q ss_pred             CCCceEEEEEEc
Q psy11143        201 QDSGLYRCTASN  212 (940)
Q Consensus       201 ~DsG~YtC~a~N  212 (940)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999998753

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0031  Score=55.34  Aligned_cols=72  Identities=17%  Similarity=0.387  Sum_probs=47.0

Q ss_pred             CCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEE-------eecCe-----EEEEeeeccCCCeEEEEE
Q psy11143        236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTY-------EHDGF-----VLVLNGVRESDAGVYNCV  301 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~-------~~~g~-----sL~I~~v~~~DsG~YtC~  301 (940)
                      |....+..++.++|.|.+.|+ |.. .|+|+++|..+........       ..++.     .|.|..-.......|+|.
T Consensus        12 p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~   91 (108)
T d1ow0a2          12 PPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM   91 (108)
T ss_dssp             CCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEE
T ss_pred             CCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEE
Confidence            334445568899999999995 544 8999999998865432211       11221     255554444456689999


Q ss_pred             EEeCCC
Q psy11143        302 AQNSEG  307 (940)
Q Consensus       302 A~N~~G  307 (940)
                      +.+...
T Consensus        92 V~H~sl   97 (108)
T d1ow0a2          92 VGHEAL   97 (108)
T ss_dssp             EECTTC
T ss_pred             EEeCCC
Confidence            998754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.09  E-value=0.0076  Score=53.88  Aligned_cols=70  Identities=19%  Similarity=0.427  Sum_probs=46.9

Q ss_pred             EcCCceeecCCCeEEEEEeecCcC--CCeEEEEeC--Ce---eec-------------cCCcEEEeee-----ceEEEec
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEP--LPRISWSKD--EA---EFV-------------EDRNHKIHRT-----GSLRLYN  381 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P--~p~i~W~k~--g~---~i~-------------~~~~~~i~~~-----~sL~I~~  381 (940)
                      ..|..+...+|++|+|.|.+.+..  ...+.|++.  |.   .+.             ...++.+..+     ..|.|.+
T Consensus         6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~   85 (120)
T d1ypzf1           6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (120)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccc
Confidence            334456778899999999977543  346899872  11   110             1124444332     2599999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy11143        382 IGPQDSGLYRCTASN  396 (940)
Q Consensus       382 v~~~D~G~YtC~A~N  396 (940)
                      +..+|+|.|.|.+.-
T Consensus        86 l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          86 LEEEDEAIYYCSYGE  100 (120)
T ss_dssp             CCGGGCSEEEEEECC
T ss_pred             cccccceeEEEEEcC
Confidence            999999999997653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.01  Score=52.58  Aligned_cols=67  Identities=7%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             EEEecCCeEEEEEEeeccCCC---eEEEEECC-Ee---e------------cCCCCeEEE----eeceEEEEcccccCCC
Q psy11143         55 TTYSTGSTSRITCLVEGHPLP---QMTWFHDG-NS---L------------DSDDHVTYE----HDGFVLVLNGVRESDA  111 (940)
Q Consensus        55 ~~V~eGesv~L~C~v~g~P~p---~V~W~kdg-~~---I------------~~~~~~~~~----~~gs~L~I~~v~~~Ds  111 (940)
                      ..+.+|++|+|.|..++....   .+.|++.. ..   +            ....+.++.    .+...|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            346789999999998653322   23355421 10   0            011223333    1223589999999999


Q ss_pred             eEEEEEEEeC
Q psy11143        112 GVYNCVAQNS  121 (940)
Q Consensus       112 G~YtC~a~n~  121 (940)
                      |.|.|.+...
T Consensus        90 avYyCa~~~~   99 (118)
T d1yjdc1          90 DIYFCKIEVM   99 (118)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEecc
Confidence            9999987643

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0077  Score=52.44  Aligned_cols=80  Identities=19%  Similarity=0.198  Sum_probs=44.8

Q ss_pred             EeCCCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCC--eEEEeec-----eEEEEcccccC--CCeEEEEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDH--VTYEHDG-----FVLVLNGVRES--DAGVYNCV  117 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~--~~~~~~g-----s~L~I~~v~~~--DsG~YtC~  117 (940)
                      .+.|........+.++|.|.+.| +|. .+|+|.++|..+.....  .....+|     +.|.|..-...  ....|+|.
T Consensus        10 ~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~   89 (105)
T d1dn0b2          10 PLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCK   89 (105)
T ss_dssp             EEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEE
T ss_pred             eECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEE
Confidence            44455455556789999999998 453 49999999876643210  0111223     23455443332  22479999


Q ss_pred             EEeCCCceEEE
Q psy11143        118 AQNSEGSAESV  128 (940)
Q Consensus       118 a~n~~g~~~~~  128 (940)
                      |.+..+.....
T Consensus        90 V~H~~~~~~~~  100 (105)
T d1dn0b2          90 VQHPNGNKEKN  100 (105)
T ss_dssp             EECTTCCEEEE
T ss_pred             EEECCCCEEeE
Confidence            99987654443

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.013  Score=51.50  Aligned_cols=68  Identities=16%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             ceeecCCCeEEEEEeecCc--CCCeEEEEeC--Ce----eecc-----------CCcEEEeeec-----eEEEecCCCCC
Q psy11143        331 DMRAPAGSSVEIPCKPDGE--PLPRISWSKD--EA----EFVE-----------DRNHKIHRTG-----SLRLYNIGPQD  386 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~--P~p~i~W~k~--g~----~i~~-----------~~~~~i~~~~-----sL~I~~v~~~D  386 (940)
                      ...+.+|++|+|.|..++.  ..-.+.|.+.  +.    .+..           .+++.+..+.     +|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3567899999999998754  4447889873  22    1110           1356665432     59999999999


Q ss_pred             CeEEEEEEEeCC
Q psy11143        387 SGLYRCTASNLL  398 (940)
Q Consensus       387 ~G~YtC~A~N~~  398 (940)
                      +|.|.|......
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999886543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.02  E-value=0.00054  Score=59.12  Aligned_cols=67  Identities=13%  Similarity=0.349  Sum_probs=46.4

Q ss_pred             eeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---e---------ccCCcEEEee-----eceEEEecCCCCCCeEEEE
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---F---------VEDRNHKIHR-----TGSLRLYNIGPQDSGLYRC  392 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i---------~~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC  392 (940)
                      +++.+|++|+|.|.... ....+.|++.  |..   +         ....++.+..     ..+|.|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            46889999999998764 3458999972  211   0         1122333321     2369999999999999999


Q ss_pred             EEEeCCe
Q psy11143        393 TASNLLG  399 (940)
Q Consensus       393 ~A~N~~G  399 (940)
                      .+....|
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            9876655

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.012  Score=51.34  Aligned_cols=67  Identities=19%  Similarity=0.371  Sum_probs=44.0

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEEe----ecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTYE----HDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~~----~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .+..++|.|.+.|+ |.. .|+|.+||..+.........    .+|.     .|.|..-.......|+|.+.+.....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~   96 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS   96 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            46789999999995 543 89999999877644221111    1221     25565544455568999999976544

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.97  E-value=0.015  Score=51.18  Aligned_cols=70  Identities=17%  Similarity=0.405  Sum_probs=47.2

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC-----------CCCeEEEee----ceEEEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS-----------DDHVTYEHD----GFVLVL  103 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~-----------~~~~~~~~~----gs~L~I  103 (940)
                      ..++....+++|++++|.|.++|...  --+.|+|.  |+-      +..           ..++.+..+    ...|.|
T Consensus         4 L~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i   83 (117)
T d1mfah1           4 VQQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMEL   83 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeee
Confidence            34566777899999999999998542  35778762  211      111           124444422    134899


Q ss_pred             cccccCCCeEEEEEE
Q psy11143        104 NGVRESDAGVYNCVA  118 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a  118 (940)
                      .+++.+|++.|.|.-
T Consensus        84 ~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          84 SSLTSEDSAVYYCTR   98 (117)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEec
Confidence            999999999999964

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.94  E-value=0.0077  Score=52.98  Aligned_cols=71  Identities=15%  Similarity=0.307  Sum_probs=47.3

Q ss_pred             EcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---ec------------cCCcEEEe----eeceEEEecCCCC
Q psy11143        327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---FV------------EDRNHKIH----RTGSLRLYNIGPQ  385 (940)
Q Consensus       327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i~------------~~~~~~i~----~~~sL~I~~v~~~  385 (940)
                      ..|..+.+.+|++|+|.|.... -...+.|++-  |..   +.            ...+....    ...+|.|.++..+
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             ECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            3466677889999999999753 3458999972  110   00            01111221    1236999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy11143        386 DSGLYRCTASNLL  398 (940)
Q Consensus       386 D~G~YtC~A~N~~  398 (940)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          82 HTSQYLCASSENI   94 (112)
T ss_dssp             TCSEEEEEEECSS
T ss_pred             ccccEEEEEecCC
Confidence            9999999887544

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.94  E-value=0.0029  Score=54.96  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=41.6

Q ss_pred             cCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC--CeEEEeec-----eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         59 TGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD--HVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~--~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      .++.++|.|.+.| +|. ..|+|++||.......  ......+|     +.|.|..-.......|+|.|.+..-
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            4778999999998 453 4899999998643211  01111222     2355654444456689999998653

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=95.93  E-value=0.01  Score=50.51  Aligned_cols=64  Identities=22%  Similarity=0.442  Sum_probs=39.9

Q ss_pred             CCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCe----EEEeeceE--EEEcccccCCCeEEEEEEEeCCC
Q psy11143         60 GSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHV----TYEHDGFV--LVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        60 Gesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~----~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      +..++|.|.+.| +|. ..|+|+++|..+......    .-..+++.  .....+..++...|+|.+.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECCC
Confidence            467899999998 454 489999999987643321    11122221  11122334555679999988643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.92  E-value=0.014  Score=51.80  Aligned_cols=71  Identities=21%  Similarity=0.477  Sum_probs=48.0

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|++++|.|.++|...  .-+.|+|.  |+.      |..           ..++.+..+    ...|.|.
T Consensus         5 ~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~   84 (120)
T d1pg7x1           5 QQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELV   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccc
Confidence            3455567899999999999987543  36789873  221      111           124444422    1348999


Q ss_pred             ccccCCCeEEEEEEEe
Q psy11143        105 GVRESDAGVYNCVAQN  120 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n  120 (940)
                      +++.+|++.|.|....
T Consensus        85 ~l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          85 RLTSNDSAVYYCARED  100 (120)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCcceEEEeeecC
Confidence            9999999999998643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.92  E-value=0.014  Score=51.72  Aligned_cols=69  Identities=20%  Similarity=0.502  Sum_probs=47.4

Q ss_pred             CcEEEecCCeEEEEEEeeccCCC--eEEEEECC--Ee------ecC----------CCCeEEEeec----eEEEEccccc
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPLP--QMTWFHDG--NS------LDS----------DDHVTYEHDG----FVLVLNGVRE  108 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~p--~V~W~kdg--~~------I~~----------~~~~~~~~~g----s~L~I~~v~~  108 (940)
                      ....|++|++++|+|.++|....  .+.|+|.-  +.      +..          ..++.++.+.    ..|.|.+++.
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            44568899999999999986543  57798741  10      111          1245555332    3589999999


Q ss_pred             CCCeEEEEEEEeC
Q psy11143        109 SDAGVYNCVAQNS  121 (940)
Q Consensus       109 ~DsG~YtC~a~n~  121 (940)
                      +|++.|.|.....
T Consensus        87 eDtA~YYCAr~~~   99 (119)
T d1kxvc_          87 DDTAMYYCKPSLR   99 (119)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCcceEeeeeccc
Confidence            9999999976543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.91  E-value=0.02  Score=48.98  Aligned_cols=67  Identities=15%  Similarity=0.281  Sum_probs=41.0

Q ss_pred             cCCeEEEEEEEeeeCC--CeEEEEECCeecCCCCc---eEEeecCe--EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        243 TGSTSRITCLVEGHPL--PQMTWFHDGNSLDSDDH---VTYEHDGF--VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       243 ~G~~v~L~C~v~G~P~--p~ItW~k~g~~l~~~~~---~~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .++..+|.|.+.|+-+  ..|+|.+||..+..+..   .....+++  ......+...+...|+|++.+.....
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~~   88 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS   88 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCSS
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCCC
Confidence            4667789999999643  38999999988764321   12223332  12223445666778999999875544

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.87  E-value=0.022  Score=50.51  Aligned_cols=71  Identities=21%  Similarity=0.430  Sum_probs=48.1

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEe------ecC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNS------LDS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~------I~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|++++|.|.++|..  ..-+.|+|.  |+.      +..           ..++.+..+    ...|.|.
T Consensus         5 ~esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~   84 (121)
T d1j05b_           5 QQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLT   84 (121)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccc
Confidence            345566789999999999998754  236789873  211      111           124444422    2348999


Q ss_pred             ccccCCCeEEEEEEEe
Q psy11143        105 GVRESDAGVYNCVAQN  120 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n  120 (940)
                      +++.+|++.|.|....
T Consensus        85 ~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          85 SLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             SCCGGGCEEEEEEEEB
T ss_pred             ccCcCcceEEEeEeec
Confidence            9999999999997643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.86  E-value=0.0077  Score=53.13  Aligned_cols=69  Identities=17%  Similarity=0.393  Sum_probs=47.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eecC-C----------CCeEEEeec----eEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLDS-D----------DHVTYEHDG----FVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~~-~----------~~~~~~~~g----s~L~I~  104 (940)
                      .++....++.|+++.|.|.++|....  .+.|+|.  |+      .|.. .          .++.+..+.    ..|.|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            45566778999999999999986543  6788873  21      1211 1          234444221    348999


Q ss_pred             ccccCCCeEEEEEE
Q psy11143        105 GVRESDAGVYNCVA  118 (940)
Q Consensus       105 ~v~~~DsG~YtC~a  118 (940)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999954

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.0086  Score=52.70  Aligned_cols=69  Identities=23%  Similarity=0.539  Sum_probs=47.0

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC----------CCCeEEEee----ceEEEEccc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS----------DDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~----------~~~~~~~~~----gs~L~I~~v  106 (940)
                      +.....+++|++++|+|.++|...  --+.|+|.  |+.      |..          ..++.++.+    ...|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL   85 (117)
T d1c5db1           6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (117)
T ss_dssp             EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc
Confidence            334556899999999999998654  36788873  211      111          124444422    235899999


Q ss_pred             ccCCCeEEEEEEE
Q psy11143        107 RESDAGVYNCVAQ  119 (940)
Q Consensus       107 ~~~DsG~YtC~a~  119 (940)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1c5db1          86 QTEDTAIYFCTRE   98 (117)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcceEEEEecc
Confidence            9999999999643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.83  E-value=0.015  Score=50.94  Aligned_cols=71  Identities=20%  Similarity=0.508  Sum_probs=49.0

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eec-C----------CCCeEEEeec----eEEEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLD-S----------DDHVTYEHDG----FVLVL  103 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~-~----------~~~~~~~~~g----s~L~I  103 (940)
                      ..++....++.|+++.|+|.++|....  -+.|+|.  |+      .|. .          ..++.++.+.    ..|.|
T Consensus         4 L~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~   83 (116)
T d1mjuh1           4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL   83 (116)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecc
Confidence            356677889999999999999985533  5778872  21      111 1          1244554222    34899


Q ss_pred             cccccCCCeEEEEEEE
Q psy11143        104 NGVRESDAGVYNCVAQ  119 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~  119 (940)
                      .+++.+|++.|.|.-.
T Consensus        84 ~sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          84 SSLTSDDSAVYYCANK   99 (116)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCCceEEEEccc
Confidence            9999999999999643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.83  E-value=0.0077  Score=53.50  Aligned_cols=69  Identities=16%  Similarity=0.433  Sum_probs=46.1

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC-----------CCCeEEEe----eceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS-----------DDHVTYEH----DGFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~-----------~~~~~~~~----~gs~L~I~~  105 (940)
                      ++....+++|++++|.|.++|...  --+.|+|.  |+.      +..           ..++.+..    +...|.|.+
T Consensus         6 esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~   85 (119)
T d1qnzh_           6 QSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSR   85 (119)
T ss_dssp             EECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecc
Confidence            334456889999999999987542  35789873  211      111           12444542    123489999


Q ss_pred             cccCCCeEEEEEEE
Q psy11143        106 VRESDAGVYNCVAQ  119 (940)
Q Consensus       106 v~~~DsG~YtC~a~  119 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          86 LTSDDSAVYYCAIH   99 (119)
T ss_dssp             ECGGGCEEEEEEEC
T ss_pred             cCccceeEEEEEEe
Confidence            99999999999654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.81  E-value=0.0094  Score=52.42  Aligned_cols=70  Identities=20%  Similarity=0.351  Sum_probs=46.7

Q ss_pred             EecCCceeecCCCcEEEEEEeCCCCCCeEEEee--CCeecc------c---------cCceEEe----eeceEEEeeccc
Q psy11143        142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK--DEAEFV------E---------DRNHKIH----RTGSLRLYNIGP  200 (940)
Q Consensus       142 ~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k--~g~~i~------~---------~~~~~~~----~~~sL~I~~v~~  200 (940)
                      ...|....+.+|++++|.|..... ...+.|++  .++.+.      .         ..+....    ....|.|.++.+
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            344666788999999999987643 45799998  232210      0         0111111    112599999999


Q ss_pred             CCCceEEEEEEc
Q psy11143        201 QDSGLYRCTASN  212 (940)
Q Consensus       201 ~DsG~YtC~a~N  212 (940)
                      +|+|.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998753

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.81  E-value=0.01  Score=52.27  Aligned_cols=69  Identities=26%  Similarity=0.525  Sum_probs=47.2

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eec-C----------CCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLD-S----------DDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~-~----------~~~~~~~~~----gs~L~I~~  105 (940)
                      +.....++.|++++|.|.++|...  -.+.|+|.  |+      .|. .          ..++.++.+    ...|.+.+
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~   85 (117)
T d1jpth1           6 ESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNS   85 (117)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccc
Confidence            445567899999999999998653  36788863  11      121 1          124444422    23489999


Q ss_pred             cccCCCeEEEEEEE
Q psy11143        106 VRESDAGVYNCVAQ  119 (940)
Q Consensus       106 v~~~DsG~YtC~a~  119 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (117)
T d1jpth1          86 LRAEDTAVYYCARD   99 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEeec
Confidence            99999999999654

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.80  E-value=0.013  Score=51.84  Aligned_cols=70  Identities=20%  Similarity=0.514  Sum_probs=48.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eecC-----------CCCeEEEeec----eEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLDS-----------DDHVTYEHDG----FVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~~-----------~~~~~~~~~g----s~L~I~  104 (940)
                      .++....++.|++++|+|.++|....  -+.|+|.  |+      .|..           ..++.+..+.    ..|.|.
T Consensus         6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~   85 (122)
T d1vgeh1           6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (122)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccc
Confidence            34667789999999999999986533  5788873  11      1111           1244444221    248999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        86 ~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          86 SLRPEDTAVYYCARD  100 (122)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999765

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.79  E-value=0.0075  Score=53.19  Aligned_cols=68  Identities=21%  Similarity=0.409  Sum_probs=45.5

Q ss_pred             CCCcEEEecCCeEEEEEEeeccC--CCeEEEEEC--CEe------ec-CC----------CCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNS------LD-SD----------DHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~------I~-~~----------~~~~~~~~----gs~L~I~~  105 (940)
                      ++....++.|++++|.|.++|..  .-.+.|+|.  |+.      |. ..          .++.+..+    ...|.|.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~   85 (115)
T d1f3dh1           6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNS   85 (115)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeee
Confidence            34455688999999999998753  336889873  211      11 11          23444421    13489999


Q ss_pred             cccCCCeEEEEEE
Q psy11143        106 VRESDAGVYNCVA  118 (940)
Q Consensus       106 v~~~DsG~YtC~a  118 (940)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYYCAr   98 (115)
T d1f3dh1          86 LTFEDSAVYYCAN   98 (115)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcCCcEEEEEec
Confidence            9999999999954

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.011  Score=52.57  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC---eEEEeeC--Ceecc-------cc------CceE--E---eeeceEEEeeccc
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP---RISWSKD--EAEFV-------ED------RNHK--I---HRTGSLRLYNIGP  200 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p---~ItW~k~--g~~i~-------~~------~~~~--~---~~~~sL~I~~v~~  200 (940)
                      +|..+.+.+|++++|.|........   .+.|++.  +....       ..      .+..  .   .....|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            4556778899999999998643322   5889983  22110       00      0000  0   1123699999999


Q ss_pred             CCCceEEEEEEc
Q psy11143        201 QDSGLYRCTASN  212 (940)
Q Consensus       201 ~DsG~YtC~a~N  212 (940)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998764

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.77  E-value=0.021  Score=50.06  Aligned_cols=72  Identities=21%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Cee---ec-------------cCCcEEEe--eeceEEEecCCC
Q psy11143        325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAE---FV-------------EDRNHKIH--RTGSLRLYNIGP  384 (940)
Q Consensus       325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~---i~-------------~~~~~~i~--~~~sL~I~~v~~  384 (940)
                      +...|..+.+.+|++|+|.|.....-...+.|++-  |..   +.             ...++...  .+..|.|.....
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~   83 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESC
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCc
Confidence            44556667788999999999987665678999973  221   10             11233322  224688888999


Q ss_pred             CCCeEEEEEEEe
Q psy11143        385 QDSGLYRCTASN  396 (940)
Q Consensus       385 ~D~G~YtC~A~N  396 (940)
                      +|++.|.|.+.-
T Consensus        84 ~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          84 SQGRTLYCTCSA   95 (112)
T ss_dssp             CSCEEEEEEEES
T ss_pred             cCCccEEEEEec
Confidence            999999998653

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.77  E-value=0.015  Score=51.21  Aligned_cols=68  Identities=22%  Similarity=0.397  Sum_probs=47.4

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|++++|.|.+.|....  .+.|++  .|+.+      ..           ..++.+..+.     .|.|.+
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s   84 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence            4456678899999999999986543  688987  33322      11           1344443332     489999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtAvYYCAr~   98 (117)
T d1um5h1          85 LTSEDSAVYYCARS   98 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999643

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.76  E-value=0.0094  Score=52.53  Aligned_cols=69  Identities=19%  Similarity=0.452  Sum_probs=46.6

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|++++|.|.++|...  -.+.|+|.  |+      .|..           ..++.+..+    ...|.|.
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~   84 (118)
T d1nlbh1           5 VQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQIN   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeee
Confidence            3445567899999999999998543  36889873  21      1211           123444422    2348999


Q ss_pred             ccccCCCeEEEEEE
Q psy11143        105 GVRESDAGVYNCVA  118 (940)
Q Consensus       105 ~v~~~DsG~YtC~a  118 (940)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          85 SLKNEDTATYFCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecccCcceEEEEee
Confidence            99999999999953

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.74  E-value=0.025  Score=49.75  Aligned_cols=73  Identities=21%  Similarity=0.497  Sum_probs=48.9

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eecC-----------CCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLDS-----------DDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~~-----------~~~~~~~~~----gs~L~I~~  105 (940)
                      +.....+++|++++|.|.++|....  .+.|+|.  |+      .|..           ..++.++.+    ...|.|.+
T Consensus         6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   85 (118)
T d2fbjh1           6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (118)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc
Confidence            3445668899999999999986533  5778863  21      1111           123444422    13489999


Q ss_pred             cccCCCeEEEEEEEeCCC
Q psy11143        106 VRESDAGVYNCVAQNSEG  123 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~~g  123 (940)
                      ++.+|++.|.|......+
T Consensus        86 L~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          86 VRSEDTALYYCARLHYYG  103 (118)
T ss_dssp             CCGGGCEEEEEEEEETTT
T ss_pred             cCCCcceEEEeeEecCCC
Confidence            999999999998765433

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.72  E-value=0.011  Score=52.31  Aligned_cols=70  Identities=23%  Similarity=0.487  Sum_probs=47.4

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCC---eEEEEEC--CEe------ecC----------CCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHD--GNS------LDS----------DDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p---~V~W~kd--g~~------I~~----------~~~~~~~~~----gs~L~I~~  105 (940)
                      ++....+++|++++|+|.++|....   -+.|+|.  |+-      |..          ..++.+..+    ...|.|.+
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~s   85 (119)
T d1ncwh1           6 QSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNS   85 (119)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccc
Confidence            3445668899999999999987653   4678762  221      111          124444422    13489999


Q ss_pred             cccCCCeEEEEEEEe
Q psy11143        106 VRESDAGVYNCVAQN  120 (940)
Q Consensus       106 v~~~DsG~YtC~a~n  120 (940)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          86 VTTEDTATYYCAGLL  100 (119)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccCCceEEEEeEec
Confidence            999999999997543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.70  E-value=0.012  Score=52.55  Aligned_cols=70  Identities=20%  Similarity=0.467  Sum_probs=47.8

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eec-C----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLD-S----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~-~----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....+++|++++|.|.++|...  -.+.|+|.  |+      .|. .          ..++.+..+    ...|.|.
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            4556677899999999999988543  35778762  21      111 1          124445422    2348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          85 SLTSEDSAVYYCARE   99 (125)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeee
Confidence            999999999999754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.69  E-value=0.012  Score=51.64  Aligned_cols=67  Identities=19%  Similarity=0.412  Sum_probs=46.7

Q ss_pred             CCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeecc------c----------cCceEEeeec-----eEEEeecc
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEFV------E----------DRNHKIHRTG-----SLRLYNIG  199 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i~------~----------~~~~~~~~~~-----sL~I~~v~  199 (940)
                      .-...+++|++++|.|.+.|...  -.+.|++  .|+.+.      .          ..++.+..+.     .|.|.+++
T Consensus         7 SG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~   86 (117)
T d1c5db1           7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (117)
T ss_dssp             ECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCC
T ss_pred             ECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccc
Confidence            33456889999999999998654  3688987  333221      1          2344444332     48999999


Q ss_pred             cCCCceEEEEEE
Q psy11143        200 PQDSGLYRCTAS  211 (940)
Q Consensus       200 ~~DsG~YtC~a~  211 (940)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (117)
T d1c5db1          87 TEDTAIYFCTRE   98 (117)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcceEEEEecc
Confidence            999999999643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.69  E-value=0.011  Score=52.08  Aligned_cols=67  Identities=16%  Similarity=0.370  Sum_probs=46.2

Q ss_pred             CCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------c-c----------cCceEEeeec-----eEEEeec
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLYNI  198 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~~v  198 (940)
                      .-...+++|++++|.|.+.|...  -.+.|.+  .|+.+      . .          ..++.+..+.     .|.+.++
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L   86 (117)
T d1jpth1           7 SGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSL   86 (117)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccccc
Confidence            34567889999999999998653  3688877  33211      1 1          1334444332     3889999


Q ss_pred             ccCCCceEEEEEE
Q psy11143        199 GPQDSGLYRCTAS  211 (940)
Q Consensus       199 ~~~DsG~YtC~a~  211 (940)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jpth1          87 RAEDTAVYYCARD   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCceEEEEeec
Confidence            9999999999654

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0066  Score=52.49  Aligned_cols=67  Identities=22%  Similarity=0.435  Sum_probs=42.9

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCC--ceEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD--HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~--~~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .++.++|.|.+.|+ |.. .|+|.++|.......  ......+|.     .|.|..-.....-.|+|.+.+.....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l~~   93 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN   93 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCCCC
Confidence            46789999999995 543 999999998765321  111222332     25555444444557999999975433

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.68  E-value=0.014  Score=51.41  Aligned_cols=69  Identities=17%  Similarity=0.365  Sum_probs=47.1

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------c-----------ccCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------V-----------EDRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~-----------~~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|++++|.|.+.|...  -.+.|++  .|+.+      .           -..++.+..+.     .|.|.+
T Consensus         6 esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~   85 (117)
T d1iqdb1           6 QSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecc
Confidence            334566889999999999988543  3578887  33321      1           12334444322     399999


Q ss_pred             cccCCCceEEEEEEc
Q psy11143        198 IGPQDSGLYRCTASN  212 (940)
Q Consensus       198 v~~~DsG~YtC~a~N  212 (940)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          86 LRSDDTAVYYCAVPD  100 (117)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cCcCcceEEEEeEcC
Confidence            999999999998654

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.68  E-value=0.019  Score=50.88  Aligned_cols=70  Identities=19%  Similarity=0.420  Sum_probs=48.6

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~  196 (940)
                      ..+....+++|++++|.|.+.|....  .+.|++  .|+.+      ..           ..++.+..+.     .|.|.
T Consensus         6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~   85 (122)
T d1vgeh1           6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (122)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccc
Confidence            34556778999999999999986533  588987  33221      11           1344444332     38899


Q ss_pred             ecccCCCceEEEEEEc
Q psy11143        197 NIGPQDSGLYRCTASN  212 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N  212 (940)
                      +++.+|++.|.|....
T Consensus        86 ~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          86 SLRPEDTAVYYCARDP  101 (122)
T ss_dssp             SCCGGGCEEEEEEEET
T ss_pred             ccCCCcceEEEEeecC
Confidence            9999999999997653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.02  Score=48.01  Aligned_cols=61  Identities=20%  Similarity=0.332  Sum_probs=40.3

Q ss_pred             cCCeEEEEEEEeeeCCC--eEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCC
Q psy11143        243 TGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       243 ~G~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      .++.++|.|.+.|+.+.  .|+|.++|..+..+..   .....++.     .|.|.   ..+...|+|.+.+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEECC
Confidence            45789999999995433  8899999998864432   12223332     13333   344557999998864

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=95.66  E-value=0.012  Score=51.82  Aligned_cols=68  Identities=22%  Similarity=0.477  Sum_probs=46.0

Q ss_pred             CCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CEe------ecCC----------CCeEEEee----ceEEEEcccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GNS------LDSD----------DHVTYEHD----GFVLVLNGVR  107 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~~~----------~~~~~~~~----gs~L~I~~v~  107 (940)
                      +....+++|++++|.|.++|....  -+.|+|.  |+.      |...          .++.+..+    ...|.|.+++
T Consensus         7 sG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~   86 (116)
T d1a2yb_           7 SGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLH   86 (116)
T ss_dssp             ECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             ECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeee
Confidence            345568899999999999986533  6778873  111      1111          13344422    1348999999


Q ss_pred             cCCCeEEEEEEE
Q psy11143        108 ESDAGVYNCVAQ  119 (940)
Q Consensus       108 ~~DsG~YtC~a~  119 (940)
                      .+|++.|.|.-.
T Consensus        87 ~eDTAvYYCAr~   98 (116)
T d1a2yb_          87 TDDTARYYCARE   98 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             eccceEEEEEEe
Confidence            999999999754

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.65  E-value=0.0049  Score=51.68  Aligned_cols=62  Identities=15%  Similarity=0.261  Sum_probs=42.2

Q ss_pred             CeEEEEEEeecc-CC-CeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143         61 STSRITCLVEGH-PL-PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  122 (940)
Q Consensus        61 esv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~  122 (940)
                      +.++|.|.+.|. |. ..|+|.++|..+..........+|....+.-.+......|+|.|.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCCEEEEEEEECC
Confidence            457899999984 43 389999999887654443333455443444444455668999999864

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.64  E-value=0.011  Score=52.26  Aligned_cols=68  Identities=26%  Similarity=0.483  Sum_probs=46.7

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CEe------ecC----------CCCeEEEeec----eEEEEccc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GNS------LDS----------DDHVTYEHDG----FVLVLNGV  106 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~~----------~~~~~~~~~g----s~L~I~~v  106 (940)
                      ++....|++|++++|.|.++|....  -+.|+|.  |+.      |..          ..++.+..+.    ..|.|.++
T Consensus         6 esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l   85 (120)
T d1dn0b1           6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (120)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc
Confidence            3445568899999999999986543  5789873  211      111          1245555322    34899999


Q ss_pred             ccCCCeEEEEEE
Q psy11143        107 RESDAGVYNCVA  118 (940)
Q Consensus       107 ~~~DsG~YtC~a  118 (940)
                      +.+|++.|.|..
T Consensus        86 ~~eDtA~YYCAr   97 (120)
T d1dn0b1          86 TAADTAVYYCAR   97 (120)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccccEEEEEe
Confidence            999999999943

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0062  Score=52.68  Aligned_cols=67  Identities=18%  Similarity=0.310  Sum_probs=41.6

Q ss_pred             ecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ..++.++|.|.+.|+ |.. .|.|.+++.............+|.     .|+|..-.. ..|.|+|.+.+.....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            357899999999995 433 899988775432111111222332     255554433 3678999999976544

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.64  E-value=0.0046  Score=53.55  Aligned_cols=65  Identities=22%  Similarity=0.360  Sum_probs=42.5

Q ss_pred             CCeEEEEEEeecc-CC-CeEEEEECCEeecCCC--CeEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         60 GSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDD--HVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        60 Gesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~--~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ...++|.|.+.|. |. .+|+|+++|.++....  ......+|     +.|.|..-.......|+|.|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            5689999999884 43 4899999998764211  11222223     23566655555666899999986543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.63  E-value=0.015  Score=51.67  Aligned_cols=66  Identities=17%  Similarity=0.306  Sum_probs=44.7

Q ss_pred             CceeecCCCcEEEEEEeCCCC----CCeEEEee--CCeecc----------------ccCceEEeee-----ceEEEeec
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEP----LPRISWSK--DEAEFV----------------EDRNHKIHRT-----GSLRLYNI  198 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P----~p~ItW~k--~g~~i~----------------~~~~~~~~~~-----~sL~I~~v  198 (940)
                      ....+++|++|+|.|.+.|..    ...+.|++  .|+.+.                -..++.+..+     ..|.|.++
T Consensus         8 g~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l   87 (120)
T d2agjh1           8 GPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNL   87 (120)
T ss_dssp             CCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESC
T ss_pred             CCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEee
Confidence            345678899999999987643    23688997  333211                0124444322     25999999


Q ss_pred             ccCCCceEEEEEE
Q psy11143        199 GPQDSGLYRCTAS  211 (940)
Q Consensus       199 ~~~DsG~YtC~a~  211 (940)
                      +.+|++.|.|...
T Consensus        88 ~~eDsAvYyCAr~  100 (120)
T d2agjh1          88 DPVDTATYYCART  100 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eeccceEEeeEec
Confidence            9999999999744

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=95.63  E-value=0.019  Score=50.55  Aligned_cols=70  Identities=16%  Similarity=0.443  Sum_probs=47.3

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|+++.|+|.++|...  --+.|+|.  |+-      |..           ..++++..+    ...|.|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~   84 (118)
T d1ct8b1           5 LESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFS   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccc
Confidence            3455677899999999999998543  36778762  211      111           124444422    2348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          85 SLTTEDSAIYYCARY   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeee
Confidence            999999999999654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.63  E-value=0.02  Score=51.21  Aligned_cols=72  Identities=21%  Similarity=0.473  Sum_probs=49.1

Q ss_pred             EeCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ec-C----------CCCeEEEeec----eEEEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LD-S----------DDHVTYEHDG----FVLVL  103 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~-~----------~~~~~~~~~g----s~L~I  103 (940)
                      ..++....++.|+++.|+|.++|...  --+.|+|.  |+.      |. .          ..++.+..+.    ..|.|
T Consensus         3 L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~   82 (130)
T d1rhhb1           3 LEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMEL   82 (130)
T ss_dssp             EEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEe
Confidence            34556677899999999999998543  36788863  211      11 0          1244455321    34899


Q ss_pred             cccccCCCeEEEEEEEe
Q psy11143        104 NGVRESDAGVYNCVAQN  120 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~n  120 (940)
                      .+++.+|++.|.|....
T Consensus        83 ~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             eccCCCCcEEEEEEeec
Confidence            99999999999997654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.026  Score=45.45  Aligned_cols=58  Identities=21%  Similarity=0.381  Sum_probs=41.5

Q ss_pred             ecCCeEEEEEEEeeeCCC--eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEe
Q psy11143        242 STGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN  304 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N  304 (940)
                      ..|..+.|+|.....+.+  .-.|.|+|+.|..+...   .....+.|..  .+++|.|.|+..+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~---~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC---CCceEEEEec--CCCCceEEEEEcC
Confidence            468889999998765443  66799999999765321   1122366654  7899999999753

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.62  E-value=0.023  Score=50.09  Aligned_cols=70  Identities=29%  Similarity=0.508  Sum_probs=47.5

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eec-C----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLD-S----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~-~----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|+++.|.|.++|....  -+.|+|.  |+      .|. .          ..++.++.+    ...|.|.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~   84 (119)
T d1rz7h1           5 VQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELS   84 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeee
Confidence            34556678999999999999985533  6788763  11      111 1          124444422    2348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          85 SLRSEDTAVYYCAAD   99 (119)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCcccceEEEEeec
Confidence            999999999999653

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.61  E-value=0.02  Score=50.38  Aligned_cols=68  Identities=15%  Similarity=0.291  Sum_probs=46.9

Q ss_pred             CCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc----------cCceEEeeec-----eEEEeecc
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE----------DRNHKIHRTG-----SLRLYNIG  199 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~----------~~~~~~~~~~-----sL~I~~v~  199 (940)
                      +-...+++|++++|.|.+.|....  .+.|++  .|+.+      ..          ..++.+..+.     .|.|.+++
T Consensus         7 SG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~   86 (116)
T d7fabh1           7 SGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVT   86 (116)
T ss_dssp             ECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccc
Confidence            345568899999999999985433  688987  33322      11          1344444322     49999999


Q ss_pred             cCCCceEEEEEEc
Q psy11143        200 PQDSGLYRCTASN  212 (940)
Q Consensus       200 ~~DsG~YtC~a~N  212 (940)
                      .+|++.|.|....
T Consensus        87 ~eDtAvYyCAr~~   99 (116)
T d7fabh1          87 AADTAVYYCARNL   99 (116)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEeeeec
Confidence            9999999997643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.60  E-value=0.013  Score=51.55  Aligned_cols=68  Identities=21%  Similarity=0.397  Sum_probs=46.8

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~  196 (940)
                      ..+....+++|+++.|.|.+.|....  .+.|.+  .|+.+      ..           ..++.+..+.     .|.|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            34455678899999999999886543  688887  33321      10           1244444332     48999


Q ss_pred             ecccCCCceEEEEE
Q psy11143        197 NIGPQDSGLYRCTA  210 (940)
Q Consensus       197 ~v~~~DsG~YtC~a  210 (940)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999953

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.60  E-value=0.013  Score=51.53  Aligned_cols=67  Identities=18%  Similarity=0.347  Sum_probs=45.8

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------c-c----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|++++|.|.+.|...  -.+.|++  .|+.+      . .          ..++.+..+.     .|.+.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~   85 (118)
T d1nlbh1           6 QSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINS   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeee
Confidence            344567889999999999988543  3588877  33211      1 1          2344444332     389999


Q ss_pred             cccCCCceEEEEE
Q psy11143        198 IGPQDSGLYRCTA  210 (940)
Q Consensus       198 v~~~DsG~YtC~a  210 (940)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (118)
T d1nlbh1          86 LKNEDTATYFCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceEEEEee
Confidence            9999999999953

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.59  E-value=0.013  Score=51.65  Aligned_cols=67  Identities=22%  Similarity=0.380  Sum_probs=45.4

Q ss_pred             cCCceeecCCCcEEEEEEeCCCC--CCeEEEee--CCeec------c-c----------cCceEEeee-----ceEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEP--LPRISWSK--DEAEF------V-E----------DRNHKIHRT-----GSLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k--~g~~i------~-~----------~~~~~~~~~-----~sL~I~~  197 (940)
                      .+....+++|++++|.|.+.|..  .-.+.|++  .|+.+      . .          ..++.+..+     ..|.|.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~   85 (115)
T d1f3dh1           6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNS   85 (115)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeee
Confidence            33455688999999999998753  33588987  33322      1 0          123444332     1499999


Q ss_pred             cccCCCceEEEEE
Q psy11143        198 IGPQDSGLYRCTA  210 (940)
Q Consensus       198 v~~~DsG~YtC~a  210 (940)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYYCAr   98 (115)
T d1f3dh1          86 LTFEDSAVYYCAN   98 (115)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcCCcEEEEEec
Confidence            9999999999964

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.58  E-value=0.015  Score=51.06  Aligned_cols=67  Identities=19%  Similarity=0.439  Sum_probs=46.7

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------c-c----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+-...+++|+++.|.|.++|....  .+.|++  .|+.+      . .          ..++.+..+.     .|.|.+
T Consensus         6 esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~   85 (117)
T d1jnhb1           6 QSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNS   85 (117)
T ss_dssp             ECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccc
Confidence            3445677899999999999985443  688987  33221      1 1          1344454432     388999


Q ss_pred             cccCCCceEEEEE
Q psy11143        198 IGPQDSGLYRCTA  210 (940)
Q Consensus       198 v~~~DsG~YtC~a  210 (940)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1jnhb1          86 LTSEDSAVYSCSR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999965

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.57  E-value=0.016  Score=51.15  Aligned_cols=69  Identities=20%  Similarity=0.388  Sum_probs=47.3

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eecC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLDS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|++++|.|.++|....  -+.|+|.  |+      .|..           ..++.+..+    ...|.|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~   84 (119)
T d1eapb1           5 QESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLN   84 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeee
Confidence            44566778999999999999986433  5788863  21      1221           124444422    1348999


Q ss_pred             ccccCCCeEEEEEE
Q psy11143        105 GVRESDAGVYNCVA  118 (940)
Q Consensus       105 ~v~~~DsG~YtC~a  118 (940)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (119)
T d1eapb1          85 SLTSEDSAVYFCKR   98 (119)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             cccCCcceEEEEEE
Confidence            99999999999964

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.57  E-value=0.0016  Score=56.93  Aligned_cols=66  Identities=17%  Similarity=0.313  Sum_probs=43.0

Q ss_pred             cCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeE--EEeece-----EEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         59 TGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVT--YEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        59 eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~--~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      .+..++|.|.+.| +|. .+|+|++||..+.......  ...++.     .|.|..-...+...|+|.|.+....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            4678999999998 454 4899999999886432111  112222     2344444445667899999987544

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.55  E-value=0.014  Score=50.69  Aligned_cols=69  Identities=23%  Similarity=0.532  Sum_probs=46.9

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-------------CCCeEEEee----ceEEEE
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-------------DDHVTYEHD----GFVLVL  103 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-------------~~~~~~~~~----gs~L~I  103 (940)
                      ++....|++|++++|+|.++|...  --+.|+|.  |+      .|..             ..++.++.+    ...|.|
T Consensus         6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i   85 (109)
T d2ck0h1           6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM   85 (109)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence            345567899999999999997543  36788762  21      1111             124455532    134899


Q ss_pred             cccccCCCeEEEEEEE
Q psy11143        104 NGVRESDAGVYNCVAQ  119 (940)
Q Consensus       104 ~~v~~~DsG~YtC~a~  119 (940)
                      .+++.+|++.|.|.-.
T Consensus        86 ~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cCCCHhHCEEEEEEEc
Confidence            9999999999999743

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.53  E-value=0.014  Score=51.09  Aligned_cols=68  Identities=22%  Similarity=0.442  Sum_probs=47.3

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------c-c----------cCceEEeeec-----eEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~  196 (940)
                      ..+....+++|+++.|.|.+.|....  .+.|.+  .|+.+      . .          ..++.+..+.     .|.+.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            45556788999999999999985543  578877  33222      1 1          1244443332     48899


Q ss_pred             ecccCCCceEEEEE
Q psy11143        197 NIGPQDSGLYRCTA  210 (940)
Q Consensus       197 ~v~~~DsG~YtC~a  210 (940)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          85 SLTSDDSAVYYCAN   98 (116)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEcc
Confidence            99999999999964

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.52  E-value=0.0067  Score=53.01  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             CCeEEe-CCCcEEEecCCeEEEEEEeecc-CC-CeEEEEECCEeecCCCCe--EEEeec-----eEEEEcccccCCCeEE
Q psy11143         45 PPIFIQ-RPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDHV--TYEHDG-----FVLVLNGVRESDAGVY  114 (940)
Q Consensus        45 pP~~~~-~p~~~~V~eGesv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~~--~~~~~g-----s~L~I~~v~~~DsG~Y  114 (940)
                      +|.+.+ .|....+..+..++|.|.+.+. |. ..|+|++||..+......  ....++     +.|.|..-..  ...|
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~y   85 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEH   85 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCE
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeE
Confidence            444433 3444455677899999999984 43 389999999876532110  011122     2345544332  2369


Q ss_pred             EEEEEeCCCce
Q psy11143        115 NCVAQNSEGSA  125 (940)
Q Consensus       115 tC~a~n~~g~~  125 (940)
                      +|.|.+.....
T Consensus        86 tC~V~H~s~~~   96 (107)
T d1hxmb2          86 RCIVRHENNKN   96 (107)
T ss_dssp             EEEEEETTSGG
T ss_pred             EEEEEECCCCC
Confidence            99999876554

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.013  Score=50.64  Aligned_cols=63  Identities=13%  Similarity=0.259  Sum_probs=41.1

Q ss_pred             CCCcEEEEEEeCC-CCC-CeEEEeeCCeeccccC--------ceEEeeeceEEEeecccCCCceEEEEEEcCC
Q psy11143        152 AGSSVEIPCKPDG-EPL-PRISWSKDEAEFVEDR--------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       152 ~Ge~vtL~C~v~g-~P~-p~ItW~k~g~~i~~~~--------~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      .++.++|.|.+.| +|. ..|+|.++|.......        ...+...+.|.|..-.....-.|+|.+.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4678999999998 453 4899999987654321        1111223346666554445558999999854

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.51  E-value=0.027  Score=49.95  Aligned_cols=70  Identities=19%  Similarity=0.490  Sum_probs=47.0

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEee----ceEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~----gs~L~I~~v  106 (940)
                      .....++.|++++|.|.++|...  --+.|+|.  |+      .|..           ..++.+..+    ...|.|.++
T Consensus         7 sG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L   86 (123)
T d1mqkh_           7 SGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSL   86 (123)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeee
Confidence            34556889999999999988543  35788873  21      1211           123444422    134899999


Q ss_pred             ccCCCeEEEEEEEeC
Q psy11143        107 RESDAGVYNCVAQNS  121 (940)
Q Consensus       107 ~~~DsG~YtC~a~n~  121 (940)
                      +.+|++.|.|.....
T Consensus        87 ~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          87 KSEDTAMYYCVRHEY  101 (123)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ccCcccceeEEecCC
Confidence            999999999976543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.51  E-value=0.02  Score=50.35  Aligned_cols=70  Identities=23%  Similarity=0.484  Sum_probs=47.8

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CEe------ec-C----------CCCeEEEeec----eEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GNS------LD-S----------DDHVTYEHDG----FVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~-~----------~~~~~~~~~g----s~L~I~  104 (940)
                      .++....++.|+++.|.|.++|....  -+.|+|.  |+.      |. .          ..++.++.+.    ..|.|.
T Consensus         5 ~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~   84 (117)
T d1jnhb1           5 QQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLN   84 (117)
T ss_dssp             EECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccc
Confidence            34455667899999999999986543  6788872  111      11 1          1245555322    348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          85 SLTSEDSAVYSCSRG   99 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.47  E-value=0.022  Score=50.48  Aligned_cols=68  Identities=21%  Similarity=0.407  Sum_probs=46.7

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|++++|.|.+.|...  ..+.|++  .|+.+      ..           ..++.+..+.     .|.|.+
T Consensus         6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~   85 (120)
T d1pg7x1           6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence            344567889999999999987543  3588987  33322      10           1244443322     489999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        86 l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          86 LTSNDSAVYYCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeec
Confidence            99999999999864

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.025  Score=48.07  Aligned_cols=65  Identities=18%  Similarity=0.296  Sum_probs=40.8

Q ss_pred             cCCeEEEEEEEeeeCCC--eEEEEECCeecCCCCce---EEeecCe--EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        243 TGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHV---TYEHDGF--VLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       243 ~G~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~~---~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .+..++|.|.+.|+.+.  .|+|.++|..+......   ....++.  ....-.+...+...|+|++.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence            35679999999996443  78999999988643221   1112222  122223344555689999998653

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.45  E-value=0.031  Score=50.00  Aligned_cols=70  Identities=19%  Similarity=0.372  Sum_probs=48.2

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------cc-----------cCceEEeeec-----eEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~  196 (940)
                      ..+....+++|+++.|.|.+.|...  -.+.|.+  .|+.+      ..           ..++.+..+.     .|.+.
T Consensus         4 ~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~   83 (130)
T d1rhhb1           4 EQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELT   83 (130)
T ss_dssp             EECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEee
Confidence            3455667889999999999998543  3688887  33322      10           1244444332     38899


Q ss_pred             ecccCCCceEEEEEEc
Q psy11143        197 NIGPQDSGLYRCTASN  212 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~N  212 (940)
                      +++.+|++.|.|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDTAVYYCARDF   99 (130)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeec
Confidence            9999999999997653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.43  E-value=0.0086  Score=51.76  Aligned_cols=66  Identities=18%  Similarity=0.325  Sum_probs=41.9

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc--eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH--VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~--~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      .+..++|.|.+.|+ |.. .|+|.++|........  .....+|.     .|.|..-.......|+|.+.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l~   92 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH   92 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCCC
Confidence            47789999999995 543 8999999986542211  11122232     2555544434556799999987543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.41  E-value=0.017  Score=51.19  Aligned_cols=67  Identities=22%  Similarity=0.393  Sum_probs=45.4

Q ss_pred             CCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------cc-----------cCceEEeeec-----eEEEeec
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYNI  198 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~v  198 (940)
                      +....+++|++++|.|.+.|...  -.+.|++  .|+.+      ..           ..++.+..+.     .|.|.++
T Consensus         7 sg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L   86 (119)
T d1qnzh_           7 SGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRL   86 (119)
T ss_dssp             ECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeeccc
Confidence            33457889999999999987532  3588987  33321      10           1244443321     4999999


Q ss_pred             ccCCCceEEEEEE
Q psy11143        199 GPQDSGLYRCTAS  211 (940)
Q Consensus       199 ~~~DsG~YtC~a~  211 (940)
                      +.+|++.|.|...
T Consensus        87 ~~eDsAvYYCA~~   99 (119)
T d1qnzh_          87 TSDDSAVYYCAIH   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CccceeEEEEEEe
Confidence            9999999999653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.41  E-value=0.015  Score=50.15  Aligned_cols=65  Identities=22%  Similarity=0.360  Sum_probs=42.2

Q ss_pred             CCeEEEEEEEeee-CC-CeEEEEECCeecCCCC--ceEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        244 GSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDD--HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       244 G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~--~~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      ...+.|.|.+.|+ |. ..|+|.++|.++....  ......+|.     .|.|..-.......|+|.|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            5678999999986 43 3899999998765221  112222332     2555554445566899999997544

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.40  E-value=0.047  Score=48.09  Aligned_cols=65  Identities=25%  Similarity=0.553  Sum_probs=47.3

Q ss_pred             eeecCCCeEEEEEeecCcCCC--eEEEEeC--Ce--e----ec--------c--CCcEEEeeec-----eEEEecCCCCC
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLP--RISWSKD--EA--E----FV--------E--DRNHKIHRTG-----SLRLYNIGPQD  386 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p--~i~W~k~--g~--~----i~--------~--~~~~~i~~~~-----sL~I~~v~~~D  386 (940)
                      ..+.+|++++|+|.+.|....  .+.|++.  |+  +    +.        +  ..|+.++.+.     .|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            467889999999999987665  6778763  11  0    11        1  2467776543     59999999999


Q ss_pred             CeEEEEEEEe
Q psy11143        387 SGLYRCTASN  396 (940)
Q Consensus       387 ~G~YtC~A~N  396 (940)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.40  E-value=0.021  Score=50.71  Aligned_cols=70  Identities=20%  Similarity=0.446  Sum_probs=47.7

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eecC-----------CCCeEEEeec----eEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLDS-----------DDHVTYEHDG----FVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~~-----------~~~~~~~~~g----s~L~I~  104 (940)
                      .++....++.|+++.|.|.++|....  .+.|+|.  |+      .|..           ..++.++.+.    ..|.|.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~   84 (124)
T d2b1hh1           5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS   84 (124)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence            44566778999999999999986533  5788872  11      1111           2344444322    348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          85 SLKPSDTALYYCARL   99 (124)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccccceEEEEeec
Confidence            999999999999543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=95.38  E-value=0.017  Score=50.79  Aligned_cols=66  Identities=17%  Similarity=0.339  Sum_probs=45.7

Q ss_pred             CceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc----------cCceEEeeec-----eEEEeeccc
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE----------DRNHKIHRTG-----SLRLYNIGP  200 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~----------~~~~~~~~~~-----sL~I~~v~~  200 (940)
                      -...+++|++++|.|.+.|....  .+.|++  .|+.+      ..          ..++.+..+.     .|.|.+++.
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence            34568899999999999985433  688987  33321      10          1234444322     399999999


Q ss_pred             CCCceEEEEEE
Q psy11143        201 QDSGLYRCTAS  211 (940)
Q Consensus       201 ~DsG~YtC~a~  211 (940)
                      +|++.|.|.-.
T Consensus        88 eDTAvYYCAr~   98 (116)
T d1a2yb_          88 DDTARYYCARE   98 (116)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.38  E-value=0.018  Score=50.72  Aligned_cols=68  Identities=24%  Similarity=0.435  Sum_probs=46.5

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------cc-----------cCceEEeee-----ceEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------VE-----------DRNHKIHRT-----GSLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~~-----------~~~~~~~~~-----~sL~I~  196 (940)
                      .++....+++|++++|.|.+.|...  -.+.|.+  .|+.+      ..           ..+..+..+     ..|.|.
T Consensus         5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~   84 (117)
T d1mfah1           5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence            4455677889999999999987543  3578877  34322      10           123344332     148999


Q ss_pred             ecccCCCceEEEEE
Q psy11143        197 NIGPQDSGLYRCTA  210 (940)
Q Consensus       197 ~v~~~DsG~YtC~a  210 (940)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999964

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.37  E-value=0.016  Score=51.22  Aligned_cols=65  Identities=17%  Similarity=0.309  Sum_probs=45.7

Q ss_pred             CceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc----------cCceEEeeec-----eEEEeeccc
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE----------DRNHKIHRTG-----SLRLYNIGP  200 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~----------~~~~~~~~~~-----sL~I~~v~~  200 (940)
                      -...+++|++++|.|.+.|....  .+.|++  .|+.+      ..          ..++.+..+.     .|.|.+++.
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1           8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (120)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence            34568899999999999986543  588987  33322      11          2345554432     399999999


Q ss_pred             CCCceEEEEE
Q psy11143        201 QDSGLYRCTA  210 (940)
Q Consensus       201 ~DsG~YtC~a  210 (940)
                      +|++.|.|..
T Consensus        88 eDtA~YYCAr   97 (120)
T d1dn0b1          88 ADTAVYYCAR   97 (120)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccccEEEEEe
Confidence            9999999943

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.013  Score=50.51  Aligned_cols=66  Identities=14%  Similarity=0.324  Sum_probs=42.3

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc--eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH--VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  308 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~--~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs  308 (940)
                      ..+.++|.|.+.|+ |.. .|+|+++|..+.....  .....+|.     .|.|..-.......|+|++.+....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l~   91 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH   91 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            35678999999995 543 8999999987753211  11222332     2555444444566899999987533

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.37  E-value=0.035  Score=49.35  Aligned_cols=70  Identities=20%  Similarity=0.436  Sum_probs=48.0

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CEe------ec-C----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GNS------LD-S----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~-~----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....+++|+++.|.|.++|....  -+.|+|.  |+.      |. .          ..++.++.+    ...|.|.
T Consensus         4 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~   83 (126)
T d1lmka1           4 QQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS   83 (126)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence            45566778999999999999986543  5778762  211      11 1          134445422    2348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|.-.
T Consensus        84 ~L~~eDTAvYYCAr~   98 (126)
T d1lmka1          84 SLTSEDSAVYYCARG   98 (126)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999643

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.37  E-value=0.0024  Score=55.72  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=43.4

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceE--EeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVT--YEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~--~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      .+..++|.|.+.|. |.. .|+|+++|..+.......  ...++.     .|.|..-...+...|+|.+.+.....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~   94 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV   94 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence            46778999999995 443 899999999886432211  112222     14444444455678999999986544

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.36  E-value=0.033  Score=49.64  Aligned_cols=71  Identities=23%  Similarity=0.475  Sum_probs=47.9

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ec-C----------CCCeEEEeec----eEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LD-S----------DDHVTYEHDG----FVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~-~----------~~~~~~~~~g----s~L~I~~  105 (940)
                      ++....++.|+++.|+|.++|...  --+.|+|.  |+-      |. .          ..++.+..+.    ..|.|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~s   85 (127)
T d2fx7h1           6 QSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecc
Confidence            445566889999999999998543  35788862  211      11 1          2244455322    3489999


Q ss_pred             cccCCCeEEEEEEEeC
Q psy11143        106 VRESDAGVYNCVAQNS  121 (940)
Q Consensus       106 v~~~DsG~YtC~a~n~  121 (940)
                      ++.+|++.|.|.-...
T Consensus        86 L~~eDTavYYCAR~~~  101 (127)
T d2fx7h1          86 LRPEDTAVYYCAREGT  101 (127)
T ss_dssp             CCGGGCEEEEEEEEEE
T ss_pred             cCcccceEEEEeeccc
Confidence            9999999999986543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.35  E-value=0.032  Score=49.23  Aligned_cols=69  Identities=20%  Similarity=0.491  Sum_probs=46.5

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC-------------CCCeEEEeec----eEEEEc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS-------------DDHVTYEHDG----FVLVLN  104 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~-------------~~~~~~~~~g----s~L~I~  104 (940)
                      +....|+.|++++|.|.++|...  --+.|+|.  |+.      |..             ..++.++.+.    ..|.|.
T Consensus         7 sG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~   86 (120)
T d1dlfh_           7 SGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMN   86 (120)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceecccee
Confidence            34456889999999999998543  36788863  221      111             1244454321    348999


Q ss_pred             ccccCCCeEEEEEEEe
Q psy11143        105 GVRESDAGVYNCVAQN  120 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n  120 (940)
                      +++.+|++.|.|....
T Consensus        87 ~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          87 TLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             SCCGGGCEEEEEEEEB
T ss_pred             eccCCCceEEEeeEec
Confidence            9999999999996543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.35  E-value=0.019  Score=51.01  Aligned_cols=68  Identities=21%  Similarity=0.400  Sum_probs=46.7

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------c-c----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|++++|.|.+.|...  ..+.|++  .|+.+      . .          ..++.+..+.     .|.|.+
T Consensus         6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~   85 (121)
T d1j05b_           6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS   85 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence            444567889999999999987543  3688987  33322      1 0          1244443321     389999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d1j05b_          86 LTSEDTAVYYCAPF   99 (121)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcCcceEEEeEee
Confidence            99999999999754

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.34  E-value=0.016  Score=50.75  Aligned_cols=67  Identities=24%  Similarity=0.522  Sum_probs=45.8

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEeec----eEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHDG----FVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~g----s~L~I~~v  106 (940)
                      .....++.|++++|.|.++|...  -.+.|+|.  |+      .|..           ..++.++.+.    ..|.|.++
T Consensus         7 SG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L   86 (114)
T d1indh1           7 SGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL   86 (114)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee
Confidence            34556889999999999988543  36778873  21      1211           1244454322    34899999


Q ss_pred             ccCCCeEEEEEE
Q psy11143        107 RESDAGVYNCVA  118 (940)
Q Consensus       107 ~~~DsG~YtC~a  118 (940)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999964

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.34  E-value=0.018  Score=50.87  Aligned_cols=67  Identities=24%  Similarity=0.408  Sum_probs=46.2

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+-...+++|+++.|.|.+.|....  .+.|++  .|+.+      ..           ..++.+..+.     .|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s   85 (119)
T d1eapb1           6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence            4445678899999999999986433  588987  33321      11           1244443322     489999


Q ss_pred             cccCCCceEEEEE
Q psy11143        198 IGPQDSGLYRCTA  210 (940)
Q Consensus       198 v~~~DsG~YtC~a  210 (940)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1eapb1          86 LTSEDSAVYFCKR   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccCCcceEEEEEE
Confidence            9999999999964

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.33  E-value=0.021  Score=50.83  Aligned_cols=69  Identities=22%  Similarity=0.533  Sum_probs=47.7

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CE------eecC-----------CCCeEEEeec----eEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GN------SLDS-----------DDHVTYEHDG----FVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~------~I~~-----------~~~~~~~~~g----s~L~I~  104 (940)
                      .++....++.|+++.|.|.++|....  -+.|+|.  |+      .|..           ..++.++.+.    ..|.|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            35566778999999999999985433  5788873  21      1211           1244555321    348999


Q ss_pred             ccccCCCeEEEEEE
Q psy11143        105 GVRESDAGVYNCVA  118 (940)
Q Consensus       105 ~v~~~DsG~YtC~a  118 (940)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          85 SLRSADTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999999963

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=95.33  E-value=0.024  Score=49.95  Aligned_cols=68  Identities=19%  Similarity=0.422  Sum_probs=46.1

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|+++.|.|.+.|...  -.+.|.+  .|+.+      ..           ..+..+..+.     .|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~   85 (118)
T d1ct8b1           6 ESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSS   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccc
Confidence            344567889999999999988543  3688877  33322      11           1233333322     488999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          86 LTTEDSAIYYCARY   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeee
Confidence            99999999999653

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.009  Score=51.68  Aligned_cols=67  Identities=19%  Similarity=0.364  Sum_probs=37.9

Q ss_pred             ecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143        242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA  309 (940)
Q Consensus       242 ~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~  309 (940)
                      ..++.++|.|.+.|+ |.. .|+|.+++.............+|.     .|+|..-.. +.+.|+|.+.+..+..
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASST   91 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCE
Confidence            357789999999995 433 899977664322111111222332     255544443 3568999999976544

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.31  E-value=0.011  Score=53.37  Aligned_cols=79  Identities=19%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             CCeeee-CCCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCce----EE----eecC-----eEEEEeeecc
Q psy11143        229 PPIFIQ-RPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV----TY----EHDG-----FVLVLNGVRE  292 (940)
Q Consensus       229 ~p~~~~-~p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~----~~----~~~g-----~sL~I~~v~~  292 (940)
                      ||.+.+ .|....+..+..++|.|.+.|+ |.. .|+|+++|..+......    ..    ..++     +.|.|..-..
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            444433 3333344557889999999995 433 89999999887543110    00    0122     1266655554


Q ss_pred             CCCe-EEEEEEEeCCC
Q psy11143        293 SDAG-VYNCVAQNSEG  307 (940)
Q Consensus       293 ~DsG-~YtC~A~N~~G  307 (940)
                      .+.| .|+|.+.+...
T Consensus        84 ~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          84 QNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             TCTTCEEEEEEEECCB
T ss_pred             CCCCCEEEEEEEECCC
Confidence            5655 79999998654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.31  E-value=0.017  Score=50.93  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             CCceeecCCCcEEEEEEeCCCCCC---eEEEee--CCeecc------c----------cCceEEeeec-----eEEEeec
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPLP---RISWSK--DEAEFV------E----------DRNHKIHRTG-----SLRLYNI  198 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~p---~ItW~k--~g~~i~------~----------~~~~~~~~~~-----sL~I~~v  198 (940)
                      +....+++|++++|.|.+.|....   .+.|.+  .|+.+.      .          ..++.+..+.     .|.+.++
T Consensus         7 sG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL   86 (119)
T d1ncwh1           7 SGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSV   86 (119)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccc
Confidence            345678899999999999986553   468877  443221      1          1244444332     4899999


Q ss_pred             ccCCCceEEEEEE
Q psy11143        199 GPQDSGLYRCTAS  211 (940)
Q Consensus       199 ~~~DsG~YtC~a~  211 (940)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1ncwh1          87 TTEDTATYYCAGL   99 (119)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEeEe
Confidence            9999999999643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.30  E-value=0.024  Score=50.70  Aligned_cols=69  Identities=22%  Similarity=0.503  Sum_probs=46.6

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE---ee---c----------------CCCCeEEEee----ceEE
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN---SL---D----------------SDDHVTYEHD----GFVL  101 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~---~I---~----------------~~~~~~~~~~----gs~L  101 (940)
                      +....+++|++++|.|.++|...  -.+.|+|.  |+   -+   .                ...++.+..+    ...|
T Consensus         7 sG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L   86 (127)
T d1i3ua_           7 SGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNL   86 (127)
T ss_dssp             ESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEE
T ss_pred             ECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEE
Confidence            34556789999999999998543  36789873  11   11   0                0124444422    2348


Q ss_pred             EEcccccCCCeEEEEEEEe
Q psy11143        102 VLNGVRESDAGVYNCVAQN  120 (940)
Q Consensus       102 ~I~~v~~~DsG~YtC~a~n  120 (940)
                      .|.+++.+|++.|.|....
T Consensus        87 ~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          87 QMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EECSCCGGGCEEEEEEEES
T ss_pred             eeecccccceeEEEEEEEe
Confidence            9999999999999998754

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.28  E-value=0.02  Score=49.87  Aligned_cols=75  Identities=11%  Similarity=0.158  Sum_probs=46.1

Q ss_pred             CCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceE--EeecCe-----EEEEeeeccCCCeEEEEEEEeCC
Q psy11143        236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVT--YEHDGF-----VLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~--~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      |....+..+..++|.|.+.|+ |.. .|+|.++|..+.......  ...++.     .|+|..-..  ...|+|.+.+..
T Consensus        16 Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s   93 (107)
T d1hxmb2          16 PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHEN   93 (107)
T ss_dssp             CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETT
T ss_pred             CCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECC
Confidence            444445667889999999995 433 899999998775432211  112222     244433222  236999999987


Q ss_pred             CCceeE
Q psy11143        307 GSAESV  312 (940)
Q Consensus       307 Gs~~~s  312 (940)
                      ......
T Consensus        94 ~~~~i~   99 (107)
T d1hxmb2          94 NKNGVD   99 (107)
T ss_dssp             SGGGSC
T ss_pred             CCCCCc
Confidence            665433

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=95.28  E-value=0.018  Score=49.18  Aligned_cols=62  Identities=16%  Similarity=0.325  Sum_probs=40.9

Q ss_pred             cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc--eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH--VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~--~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      .++.++|.|.+.|+ |.. .|+|++++..+.....  .....+|+     .|.|.   .++...|+|.+.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCCC
Confidence            35689999999995 555 8999999987754321  12223332     14443   4455689999998753

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.015  Score=50.00  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=40.9

Q ss_pred             CCCcEEEEEEeCC-CCC-CeEEEeeCCeeccccCc--------eEEeeeceEEEeecccCCCceEEEEEEcCC
Q psy11143        152 AGSSVEIPCKPDG-EPL-PRISWSKDEAEFVEDRN--------HKIHRTGSLRLYNIGPQDSGLYRCTASNLL  214 (940)
Q Consensus       152 ~Ge~vtL~C~v~g-~P~-p~ItW~k~g~~i~~~~~--------~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~  214 (940)
                      ..+.++|.|.+.+ +|. ..|+|.++|..+.....        ..+...+.|.|..-.......|+|.+....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4567999999998 453 48999999876643111        111223346665544455678999998753

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.26  E-value=0.025  Score=50.58  Aligned_cols=67  Identities=22%  Similarity=0.431  Sum_probs=44.3

Q ss_pred             CcEEEecCCeEEEEEEeeccCC----CeEEEEEC--CEe------ecC----------CCCeEEEee----ceEEEEccc
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPL----PQMTWFHD--GNS------LDS----------DDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~----p~V~W~kd--g~~------I~~----------~~~~~~~~~----gs~L~I~~v  106 (940)
                      ....+++|++++|.|.++|...    ..+.|+|.  |+.      +..          ..++.+..+    ...|.|.++
T Consensus         8 G~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l   87 (126)
T d1etzb1           8 GPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSV   87 (126)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecc
Confidence            3446888999999999987432    24679862  111      111          124444422    235899999


Q ss_pred             ccCCCeEEEEEEE
Q psy11143        107 RESDAGVYNCVAQ  119 (940)
Q Consensus       107 ~~~DsG~YtC~a~  119 (940)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999754

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.028  Score=49.59  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=39.7

Q ss_pred             eecCCCeEEEEEeecCcCCC--e-EEEEeCC-e--e-e------------ccCCcEEEee-----eceEEEecCCCCCCe
Q psy11143        333 RAPAGSSVEIPCKPDGEPLP--R-ISWSKDE-A--E-F------------VEDRNHKIHR-----TGSLRLYNIGPQDSG  388 (940)
Q Consensus       333 ~v~~G~~vtL~C~v~g~P~p--~-i~W~k~g-~--~-i------------~~~~~~~i~~-----~~sL~I~~v~~~D~G  388 (940)
                      .+.+|++|+|.|...+....  . +.|++.. .  + +            ....++.+..     ..+|.|.++..+|+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            45678999999998755433  2 3455421 1  1 1            0112222221     226999999999999


Q ss_pred             EEEEEEEe
Q psy11143        389 LYRCTASN  396 (940)
Q Consensus       389 ~YtC~A~N  396 (940)
                      .|.|.+..
T Consensus        91 vYyCa~~~   98 (118)
T d1yjdc1          91 IYFCKIEV   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998765

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.25  E-value=0.034  Score=48.20  Aligned_cols=65  Identities=20%  Similarity=0.477  Sum_probs=46.7

Q ss_pred             ceeecCCCeEEEEEeecCcCCC--eEEEEeC--Ce--e----ecc-------------CCcEEEeeec-----eEEEecC
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLP--RISWSKD--EA--E----FVE-------------DRNHKIHRTG-----SLRLYNI  382 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p--~i~W~k~--g~--~----i~~-------------~~~~~i~~~~-----sL~I~~v  382 (940)
                      ...+.+|++++|+|++.|....  .+.|.+.  |+  +    |..             .+|++++.+.     .|.|.++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            3567899999999999987654  7788762  21  1    110             1366776532     5899999


Q ss_pred             CCCCCeEEEEEEE
Q psy11143        383 GPQDSGLYRCTAS  395 (940)
Q Consensus       383 ~~~D~G~YtC~A~  395 (940)
                      +.+|++.|.|.-.
T Consensus        89 ~~eDTAvYYCAr~  101 (109)
T d2ck0h1          89 KTEDTGIYYCVRG  101 (109)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CHhHCEEEEEEEc
Confidence            9999999999743

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.24  E-value=0.02  Score=51.06  Aligned_cols=68  Identities=19%  Similarity=0.399  Sum_probs=47.3

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------c-c----------cCceEEeeec-----eEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~  196 (940)
                      ..+....+++|+++.|.|.+.|....  .+.|.+  .|+.+      . .          ..++.+..+.     .|.+.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            34556778999999999999985443  578887  33322      1 1          1244444432     38899


Q ss_pred             ecccCCCceEEEEE
Q psy11143        197 NIGPQDSGLYRCTA  210 (940)
Q Consensus       197 ~v~~~DsG~YtC~a  210 (940)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          85 SLRSADTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999999964

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.23  E-value=0.0097  Score=49.81  Aligned_cols=62  Identities=13%  Similarity=0.213  Sum_probs=41.3

Q ss_pred             CeEEEEEEEeeeCCC--eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCC
Q psy11143        245 STSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE  306 (940)
Q Consensus       245 ~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~  306 (940)
                      ..++|.|.+.|+.+.  .|+|.++|..+..........+|.-..+.-+.......|+|.+.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCCEEEEEEEECC
Confidence            446899999996433  88899999887655444444555433333333344557999999864

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.23  E-value=0.025  Score=50.32  Aligned_cols=66  Identities=20%  Similarity=0.408  Sum_probs=46.0

Q ss_pred             CceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEeecc
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYNIG  199 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~v~  199 (940)
                      -...+++|+++.|.|.+.|....  .+.|.+  .|+.+      ..           ..++.+..+.     .|.+.+++
T Consensus         7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            34568899999999999985433  688987  33221      11           1344444332     48899999


Q ss_pred             cCCCceEEEEEE
Q psy11143        200 PQDSGLYRCTAS  211 (940)
Q Consensus       200 ~~DsG~YtC~a~  211 (940)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (124)
T d1zvya1          87 SEDTAIYTCGAT   98 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEeec
Confidence            999999999764

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.22  E-value=0.019  Score=51.24  Aligned_cols=69  Identities=19%  Similarity=0.394  Sum_probs=47.1

Q ss_pred             ecCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------c-c----------cCceEEeeec-----eEEEe
Q psy11143        143 VKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLY  196 (940)
Q Consensus       143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~  196 (940)
                      ..+....+++|++++|.|.+.|....  .+.|++  .|+.+      . .          ..+..+..+.     .|.|.
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            34455678899999999999875433  588877  33221      1 0          1344443332     38899


Q ss_pred             ecccCCCceEEEEEE
Q psy11143        197 NIGPQDSGLYRCTAS  211 (940)
Q Consensus       197 ~v~~~DsG~YtC~a~  211 (940)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          85 SLTSEDSAVYYCARE   99 (125)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeee
Confidence            999999999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.22  E-value=0.025  Score=50.29  Aligned_cols=67  Identities=21%  Similarity=0.398  Sum_probs=46.6

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|+++.|.|.+.|....  .+.|.+  .|+.+      ..           ..++.+..+.     .|.+.+
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~   84 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS   84 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence            4455678899999999999986443  578877  33221      11           1344443332     489999


Q ss_pred             cccCCCceEEEEE
Q psy11143        198 IGPQDSGLYRCTA  210 (940)
Q Consensus       198 v~~~DsG~YtC~a  210 (940)
                      ++.+|++.|.|..
T Consensus        85 L~~eDTAvYYCAr   97 (126)
T d1lmka1          85 LTSEDSAVYYCAR   97 (126)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.21  E-value=0.023  Score=50.10  Aligned_cols=68  Identities=22%  Similarity=0.415  Sum_probs=46.7

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------c-c----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|+++.|.|.+.|....  .+.|++  .|+.+      . .          ..++.+..+.     .|.|.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~s   85 (119)
T d1rz7h1           6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeec
Confidence            3445667899999999999985533  688877  33221      1 1          1244444322     489999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            99999999999754

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.21  E-value=0.023  Score=50.56  Aligned_cols=68  Identities=24%  Similarity=0.432  Sum_probs=44.8

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC----CeEEEEEC--CEe------ecCC----------CCeEEEee----ceEEEEcc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL----PQMTWFHD--GNS------LDSD----------DHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~----p~V~W~kd--g~~------I~~~----------~~~~~~~~----gs~L~I~~  105 (940)
                      +....|++|++++|.|.++|...    .-+.|+|.  |+.      +...          .++.+..+    ...|.|.+
T Consensus         7 sg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~s   86 (123)
T d1r0ah1           7 SGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMT   86 (123)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceee
Confidence            34456889999999999987532    24679863  211      1111          23444422    13489999


Q ss_pred             cccCCCeEEEEEEE
Q psy11143        106 VRESDAGVYNCVAQ  119 (940)
Q Consensus       106 v~~~DsG~YtC~a~  119 (940)
                      ++.+|++.|.|...
T Consensus        87 l~~eDsAvYyCAr~  100 (123)
T d1r0ah1          87 VETADTAIYYCAQS  100 (123)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEeeccc
Confidence            99999999999754

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.20  E-value=0.021  Score=51.18  Aligned_cols=67  Identities=22%  Similarity=0.512  Sum_probs=46.0

Q ss_pred             CceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeecc----------------------ccCceEEeeec-----eEE
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEFV----------------------EDRNHKIHRTG-----SLR  194 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i~----------------------~~~~~~~~~~~-----sL~  194 (940)
                      -...+++|++++|.|.+.|...  -.+.|++  .|+.+.                      -..++.+..+.     .|.
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            3456789999999999998543  3688987  222110                      01244443321     489


Q ss_pred             EeecccCCCceEEEEEEc
Q psy11143        195 LYNIGPQDSGLYRCTASN  212 (940)
Q Consensus       195 I~~v~~~DsG~YtC~a~N  212 (940)
                      |.+++.+|++.|.|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999998653

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.015  Score=47.79  Aligned_cols=75  Identities=20%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             cCCCeEEEEEeecCcCCCeEEEEeCCeeeccC--CcEEEeeeceEEEecCCC-CCCeEEEEEEEe-CCeeEEEEEEEEEe
Q psy11143        335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIHRTGSLRLYNIGP-QDSGLYRCTASN-LLGEDVAEGYLTVT  410 (940)
Q Consensus       335 ~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~--~~~~i~~~~sL~I~~v~~-~D~G~YtC~A~N-~~G~~~~s~~L~V~  410 (940)
                      ..|.+|+|+|.-  .+...|.|.+++..+...  ..........|.+.+.+. +++|.|.|.+.. .-.......+|+.+
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKAR   85 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR   85 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEEC
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEEEEeE
Confidence            358999999963  345689999999887643  222233445688888877 799999999843 22233334555554


Q ss_pred             c
Q psy11143        411 G  411 (940)
Q Consensus       411 ~  411 (940)
                      .
T Consensus        86 V   86 (91)
T d1xiwa_          86 V   86 (91)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.16  E-value=0.067  Score=47.29  Aligned_cols=66  Identities=20%  Similarity=0.476  Sum_probs=47.0

Q ss_pred             eeecCCCeEEEEEeecCcCCC--eEEEEeC--Ce------eec-----------cCCcEEEeeec-----eEEEecCCCC
Q psy11143        332 MRAPAGSSVEIPCKPDGEPLP--RISWSKD--EA------EFV-----------EDRNHKIHRTG-----SLRLYNIGPQ  385 (940)
Q Consensus       332 ~~v~~G~~vtL~C~v~g~P~p--~i~W~k~--g~------~i~-----------~~~~~~i~~~~-----sL~I~~v~~~  385 (940)
                      ..+++|++++|+|++.|....  .+.|.+.  |+      .|.           -..|+.++.+.     .|.|.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            467889999999999987654  6778762  21      111           02466776532     4999999999


Q ss_pred             CCeEEEEEEEeC
Q psy11143        386 DSGLYRCTASNL  397 (940)
Q Consensus       386 D~G~YtC~A~N~  397 (940)
                      |++.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (123)
T d1mqkh_          90 DTAMYYCVRHEY  101 (123)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cccceeEEecCC
Confidence            999999976543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.13  E-value=0.022  Score=50.80  Aligned_cols=69  Identities=22%  Similarity=0.439  Sum_probs=47.4

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+-...+++|+++.|.|.+.|....  .+.|.+  .|+.+      ..           ..++.+..+.     .|.+.+
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~s   85 (128)
T d2nxyd1           6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRN   85 (128)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeee
Confidence            3445678899999999999986544  477876  33221      10           1344444332     388999


Q ss_pred             cccCCCceEEEEEEc
Q psy11143        198 IGPQDSGLYRCTASN  212 (940)
Q Consensus       198 v~~~DsG~YtC~a~N  212 (940)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          86 LRSDDTAVYFCAGVY  100 (128)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccCceEEEEeEEe
Confidence            999999999998654

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.13  E-value=0.026  Score=50.26  Aligned_cols=68  Identities=24%  Similarity=0.469  Sum_probs=46.4

Q ss_pred             CCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------c-c----------cCceEEeeec-----eEEEeec
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLYNI  198 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~~v  198 (940)
                      +....+++|+++.|.|.+.|....  .+.|.+  .|+.+      . .          ..++.+..+.     .|.+.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL   86 (127)
T d2fx7h1           7 SGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeeccc
Confidence            344567899999999999975433  588887  33222      1 1          1344444332     4899999


Q ss_pred             ccCCCceEEEEEEc
Q psy11143        199 GPQDSGLYRCTASN  212 (940)
Q Consensus       199 ~~~DsG~YtC~a~N  212 (940)
                      +.+|++.|.|....
T Consensus        87 ~~eDTavYYCAR~~  100 (127)
T d2fx7h1          87 RPEDTAVYYCAREG  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccceEEEEeecc
Confidence            99999999997643

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.035  Score=48.02  Aligned_cols=77  Identities=19%  Similarity=0.251  Sum_probs=43.0

Q ss_pred             CCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc--eEEeecCe-----EEEEeeeccC--CCeEEEEEEEe
Q psy11143        236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH--VTYEHDGF-----VLVLNGVRES--DAGVYNCVAQN  304 (940)
Q Consensus       236 p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~--~~~~~~g~-----sL~I~~v~~~--DsG~YtC~A~N  304 (940)
                      +..........++|.|.+.|+ |.. .|+|.++|..+.....  .....+|.     .|+|..-...  ....|+|++.+
T Consensus        13 p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H   92 (105)
T d1dn0b2          13 SCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQH   92 (105)
T ss_dssp             CC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEEC
T ss_pred             CCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEE
Confidence            333344456789999999995 543 8999999876643211  11223332     2444433321  23479999999


Q ss_pred             CCCCceeE
Q psy11143        305 SEGSAESV  312 (940)
Q Consensus       305 ~~Gs~~~s  312 (940)
                      ..+.....
T Consensus        93 ~~~~~~~~  100 (105)
T d1dn0b2          93 PNGNKEKN  100 (105)
T ss_dssp             TTCCEEEE
T ss_pred             CCCCEEeE
Confidence            87655443

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.12  E-value=0.019  Score=50.28  Aligned_cols=66  Identities=24%  Similarity=0.511  Sum_probs=45.4

Q ss_pred             CCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------cc-----------cCceEEeeec-----eEEEeec
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYNI  198 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~v  198 (940)
                      .....+++|++++|.|.+.|...  ..+.|++  .|+.+      ..           ..++.+..+.     .|.|.++
T Consensus         7 SG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L   86 (114)
T d1indh1           7 SGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL   86 (114)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee
Confidence            33457889999999999988543  3578887  33221      11           1244444332     3999999


Q ss_pred             ccCCCceEEEEE
Q psy11143        199 GPQDSGLYRCTA  210 (940)
Q Consensus       199 ~~~DsG~YtC~a  210 (940)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999963

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.11  E-value=0.03  Score=49.59  Aligned_cols=69  Identities=19%  Similarity=0.471  Sum_probs=46.5

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEeec----eEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHDG----FVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~g----s~L~I~~v  106 (940)
                      .....|++|++++|+|.++|...  -.+.|+|.  |+      .|..           ..++.++.+.    ..|.|.++
T Consensus         7 sG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL   86 (122)
T d1bz7b1           7 SGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL   86 (122)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeee
Confidence            34456789999999999998643  35788873  11      1111           1244444222    34899999


Q ss_pred             ccCCCeEEEEEEEe
Q psy11143        107 RESDAGVYNCVAQN  120 (940)
Q Consensus       107 ~~~DsG~YtC~a~n  120 (940)
                      +.+|++.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          87 RSEDTAIYYCTRGG  100 (122)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCceEEEeecCC
Confidence            99999999997643

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.11  E-value=0.031  Score=50.07  Aligned_cols=69  Identities=22%  Similarity=0.530  Sum_probs=46.8

Q ss_pred             CCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEee----ceEEEEcc
Q psy11143         51 RPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHD----GFVLVLNG  105 (940)
Q Consensus        51 ~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~----gs~L~I~~  105 (940)
                      +.....++.|+++.|+|.++|...  --+.|+|.  |+      .|..           ..++.+..+    ...|.|.+
T Consensus         6 eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~   85 (135)
T d1ieha_           6 ASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNS   85 (135)
T ss_dssp             EECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEES
T ss_pred             eECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEee
Confidence            344556889999999999998543  35788863  21      1211           124444422    23589999


Q ss_pred             cccCCCeEEEEEEE
Q psy11143        106 VRESDAGVYNCVAQ  119 (940)
Q Consensus       106 v~~~DsG~YtC~a~  119 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (135)
T d1ieha_          86 LKSEDTAVYYCAKY   99 (135)
T ss_dssp             CCSSSCEEEEEEEB
T ss_pred             eCcccceeeEEEEe
Confidence            99999999999754

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.11  E-value=0.038  Score=48.62  Aligned_cols=70  Identities=20%  Similarity=0.485  Sum_probs=47.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CEe------ecC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GNS------LDS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|++++|.|.++|....  -+.|+|.  |+.      |..           ..++.++.+    ...|.|.
T Consensus         5 ~esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~   84 (120)
T d1ad9b1           5 VQSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELS   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccc
Confidence            34556678999999999999985533  6778763  111      111           124444422    2348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          85 SLRSEDTAFYFCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEEEc
Confidence            999999999999754

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.10  E-value=0.035  Score=49.54  Aligned_cols=71  Identities=24%  Similarity=0.462  Sum_probs=48.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CEe------ec-----------CCCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GNS------LD-----------SDDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~-----------~~~~~~~~~~----gs~L~I~  104 (940)
                      .++....+++|+++.|+|.++|....  -+.|+|.  |+.      |.           ...++.++.+    ...|.|.
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~   84 (128)
T d2nxyd1           5 VESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELR   84 (128)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeee
Confidence            34455678999999999999986544  4678762  110      11           1234555532    2348999


Q ss_pred             ccccCCCeEEEEEEEe
Q psy11143        105 GVRESDAGVYNCVAQN  120 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n  120 (940)
                      +++.+|++.|.|....
T Consensus        85 sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          85 NLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             eccccCceEEEEeEEe
Confidence            9999999999998754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.10  E-value=0.02  Score=51.58  Aligned_cols=68  Identities=25%  Similarity=0.461  Sum_probs=45.8

Q ss_pred             CcEEEecCCeEEEEEEeeccCC----CeEEEEEC--CEe------ecC----------CCCeEEEee----ceEEEEccc
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPL----PQMTWFHD--GNS------LDS----------DDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~----p~V~W~kd--g~~------I~~----------~~~~~~~~~----gs~L~I~~v  106 (940)
                      ....|++|++++|.|.++|...    .-+.|+|.  |+.      +..          ..++.+..+    ...|.|.++
T Consensus         8 g~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l   87 (132)
T d1tjgh1           8 GPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRV   87 (132)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccC
Confidence            3456889999999999987542    25789863  111      110          224444422    134899999


Q ss_pred             ccCCCeEEEEEEEe
Q psy11143        107 RESDAGVYNCVAQN  120 (940)
Q Consensus       107 ~~~DsG~YtC~a~n  120 (940)
                      +.+|++.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          88 SPVDTATYFCAHRR  101 (132)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEEEec
Confidence            99999999998653

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.10  E-value=0.026  Score=49.84  Aligned_cols=68  Identities=25%  Similarity=0.536  Sum_probs=45.9

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEee----ceEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHD----GFVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~----gs~L~I~~v  106 (940)
                      .....+++|++++|.|.++|...  .-+.|+|.  |+      .|..           ..++.++.+    ...|.|.++
T Consensus         7 SG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L   86 (121)
T d2p49b1           7 SGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSL   86 (121)
T ss_dssp             EECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeec
Confidence            34556889999999999998543  36788873  11      1111           124444422    134899999


Q ss_pred             ccCCCeEEEEEEE
Q psy11143        107 RESDAGVYNCVAQ  119 (940)
Q Consensus       107 ~~~DsG~YtC~a~  119 (940)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d2p49b1          87 KPEDTATYYCAAG   99 (121)
T ss_dssp             CGGGCEEEEEEES
T ss_pred             cccceeEEeeecc
Confidence            9999999999753

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.09  E-value=0.015  Score=50.42  Aligned_cols=62  Identities=21%  Similarity=0.472  Sum_probs=41.8

Q ss_pred             eecCCCcEEEEEEeCCCC--CCeEEEee--CCeec------cc----------cCceEEeeec-----eEEEeecccCCC
Q psy11143        149 RAPAGSSVEIPCKPDGEP--LPRISWSK--DEAEF------VE----------DRNHKIHRTG-----SLRLYNIGPQDS  203 (940)
Q Consensus       149 ~v~~Ge~vtL~C~v~g~P--~p~ItW~k--~g~~i------~~----------~~~~~~~~~~-----sL~I~~v~~~Ds  203 (940)
                      .|++|++++|.|.+.|..  .-.+.|++  .|+.+      ..          ..++.+..+.     .|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            477899999999998743  33578987  33221      11          1244444332     489999999999


Q ss_pred             ceEEEEE
Q psy11143        204 GLYRCTA  210 (940)
Q Consensus       204 G~YtC~a  210 (940)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.06  E-value=0.034  Score=49.38  Aligned_cols=69  Identities=26%  Similarity=0.538  Sum_probs=47.0

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEeec----eEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHDG----FVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~g----s~L~I~~v  106 (940)
                      .....|++|+++.|+|.++|...  -.+.|+|.  |+      .|..           ..++.++.+.    ..|.|.++
T Consensus         6 sG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL   85 (124)
T d1zvya1           6 SGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSV   85 (124)
T ss_dssp             ECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccc
Confidence            34456889999999999998553  36789873  11      1211           1244444222    34899999


Q ss_pred             ccCCCeEEEEEEEe
Q psy11143        107 RESDAGVYNCVAQN  120 (940)
Q Consensus       107 ~~~DsG~YtC~a~n  120 (940)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYYCAr~~   99 (124)
T d1zvya1          86 KSEDTAIYTCGATR   99 (124)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             cCCcceEEEEeecc
Confidence            99999999997643

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.058  Score=45.69  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             CCceeecCCCeEEEEEeecCcCCCeE-EEEeCCeeec-cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143        329 PFDMRAPAGSSVEIPCKPDGEPLPRI-SWSKDEAEFV-EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY  406 (940)
Q Consensus       329 p~~~~v~~G~~vtL~C~v~g~P~p~i-~W~k~g~~i~-~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~  406 (940)
                      |..+.+.+|+++.+.|.+. +|...+ .|.+++..+. .+..+......-++|.++...+.|.|.|.|... |....+.+
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~y   89 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN-GHLYKTNY   89 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET-TEEEEEEE
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC-CEEEEEEE
Confidence            3345788999999999998 677655 4555666554 344555555556999999999999999999876 66656666


Q ss_pred             EEEe
Q psy11143        407 LTVT  410 (940)
Q Consensus       407 L~V~  410 (940)
                      |..+
T Consensus        90 l~~r   93 (95)
T d1fltx_          90 LTHR   93 (95)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6554

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=95.05  E-value=0.055  Score=45.66  Aligned_cols=64  Identities=22%  Similarity=0.467  Sum_probs=40.4

Q ss_pred             CCeEEEEEEEeee-CCC-eEEEEECCeecCCCCce----EEeecCe--EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143        244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV----TYEHDGF--VLVLNGVRESDAGVYNCVAQNSEG  307 (940)
Q Consensus       244 G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~----~~~~~g~--sL~I~~v~~~DsG~YtC~A~N~~G  307 (940)
                      +..++|.|.+.|+ |.. .|+|.++|..+......    .-..+++  ....-.+...+...|+|.+.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECCC
Confidence            5678999999995 444 89999999988654322    1122222  111223334455579999988643

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.015  Score=50.26  Aligned_cols=75  Identities=20%  Similarity=0.307  Sum_probs=45.8

Q ss_pred             EeCCCcEEEecCCeEEEEEEeecc-CC---CeEEEEECCEeecCCCCeEEE--eec-----eEEEEcccccCCCeEEEEE
Q psy11143         49 IQRPVSTTYSTGSTSRITCLVEGH-PL---PQMTWFHDGNSLDSDDHVTYE--HDG-----FVLVLNGVRESDAGVYNCV  117 (940)
Q Consensus        49 ~~~p~~~~V~eGesv~L~C~v~g~-P~---p~V~W~kdg~~I~~~~~~~~~--~~g-----s~L~I~~v~~~DsG~YtC~  117 (940)
                      +..|....+..+..++|.|.+.|. |.   .++.|++++............  .++     +.|.|..-.......|+|.
T Consensus         5 l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~   84 (103)
T d1fp5a1           5 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR   84 (103)
T ss_dssp             EECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             EeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEE
Confidence            344445556678899999999984 53   377888988766433211111  222     2244443334446789999


Q ss_pred             EEeCCC
Q psy11143        118 AQNSEG  123 (940)
Q Consensus       118 a~n~~g  123 (940)
                      |.+...
T Consensus        85 V~H~~l   90 (103)
T d1fp5a1          85 VTHPHL   90 (103)
T ss_dssp             EECSSC
T ss_pred             EEECCC
Confidence            998654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.04  E-value=0.026  Score=49.80  Aligned_cols=68  Identities=19%  Similarity=0.386  Sum_probs=46.5

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------c-c----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------V-E----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~-~----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|++++|.|.+.|....  .+.|.+  .|+.+      . .          ..++.+..+.     .|.+.+
T Consensus         6 esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~   85 (120)
T d1ad9b1           6 QSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSS   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccc
Confidence            3445678899999999999985443  678877  33222      1 1          1334443322     488999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            99999999999754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=94.99  E-value=0.018  Score=51.01  Aligned_cols=66  Identities=15%  Similarity=0.309  Sum_probs=45.3

Q ss_pred             CceeecCCCcEEEEEEeCCCCC----CeEEEee--CCeec------cc----------cCceEEeeec-----eEEEeec
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPL----PRISWSK--DEAEF------VE----------DRNHKIHRTG-----SLRLYNI  198 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~----p~ItW~k--~g~~i------~~----------~~~~~~~~~~-----sL~I~~v  198 (940)
                      -...+++|++++|.|.+.|...    -.+.|++  .|+.+      ..          ..++.+..+.     .|.|.++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL   87 (120)
T d1ai1h1           8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV   87 (120)
T ss_dssp             CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred             CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence            3456789999999999987543    2478987  33322      11          1344444432     3899999


Q ss_pred             ccCCCceEEEEEE
Q psy11143        199 GPQDSGLYRCTAS  211 (940)
Q Consensus       199 ~~~DsG~YtC~a~  211 (940)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYYCAr~  100 (120)
T d1ai1h1          88 TNEDTAMYYCSRE  100 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eccceeEEEEEec
Confidence            9999999999743

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.97  E-value=0.036  Score=47.73  Aligned_cols=64  Identities=22%  Similarity=0.484  Sum_probs=39.4

Q ss_pred             cCCeEEEEEEeeccCCC--eEEEEEC--CEe------ecC-----------CCCeEEEee----ceEEEEcccccCCCeE
Q psy11143         59 TGSTSRITCLVEGHPLP--QMTWFHD--GNS------LDS-----------DDHVTYEHD----GFVLVLNGVRESDAGV  113 (940)
Q Consensus        59 eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~~-----------~~~~~~~~~----gs~L~I~~v~~~DsG~  113 (940)
                      .|++++|.|.++|....  -+.|+|.  |+.      |..           ..++.+..+    ...|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            48999999999986433  6889863  221      111           134444422    2358999999999999


Q ss_pred             EEEEEEeCC
Q psy11143        114 YNCVAQNSE  122 (940)
Q Consensus       114 YtC~a~n~~  122 (940)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999765443

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.97  E-value=0.022  Score=50.65  Aligned_cols=67  Identities=19%  Similarity=0.439  Sum_probs=46.1

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|+++.|.|.+.|....  .+.|++  .|+.+      ..           ..++.+..+.     .|.+.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~   85 (124)
T d2b1hh1           6 QSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSS   85 (124)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeec
Confidence            4445678899999999999986543  578887  33222      11           1344444332     488999


Q ss_pred             cccCCCceEEEEE
Q psy11143        198 IGPQDSGLYRCTA  210 (940)
Q Consensus       198 v~~~DsG~YtC~a  210 (940)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTA~YYCAR   98 (124)
T d2b1hh1          86 LKPSDTALYYCAR   98 (124)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccceEEEEee
Confidence            9999999999954

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=94.96  E-value=0.014  Score=51.83  Aligned_cols=68  Identities=13%  Similarity=0.237  Sum_probs=44.0

Q ss_pred             EecCCeEEEEEEeecc-C---CCeEEEEECCEeecCCCC--eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         57 YSTGSTSRITCLVEGH-P---LPQMTWFHDGNSLDSDDH--VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        57 V~eGesv~L~C~v~g~-P---~p~V~W~kdg~~I~~~~~--~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      ...++.++|.|.+.|. |   ..+|+|+++|..+.....  .....++     +.|.|..-.......|+|.|.+..-.
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~  107 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP  107 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCC
Confidence            3568899999999984 4   348899999988754321  2222333     22444444444556799999987543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.95  E-value=0.055  Score=48.49  Aligned_cols=72  Identities=25%  Similarity=0.515  Sum_probs=48.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CEe------ec-----------CCCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GNS------LD-----------SDDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~-----------~~~~~~~~~~----gs~L~I~  104 (940)
                      .+.....+++|+++.|.|.++|....  -+.|+|.  |+.      |.           ...++.+..+    ...|.+.
T Consensus         4 ~esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~   83 (133)
T d1rzfh1           4 VQSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLR   83 (133)
T ss_dssp             EECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeec
Confidence            34455678999999999999986543  5678762  111      11           1234555532    2348999


Q ss_pred             ccccCCCeEEEEEEEeC
Q psy11143        105 GVRESDAGVYNCVAQNS  121 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~n~  121 (940)
                      +++.+|++.|.|.....
T Consensus        84 ~L~~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          84 GLRSDDTAVYYCASNSI  100 (133)
T ss_dssp             SCCGGGCEEEEEEEEEC
T ss_pred             cCCCCCCEEEEeeeccC
Confidence            99999999999966543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.94  E-value=0.043  Score=48.32  Aligned_cols=66  Identities=21%  Similarity=0.442  Sum_probs=45.6

Q ss_pred             CceeecCCCcEEEEEEeCCCC--CCeEEEee--CCeecc------c-------------cCceEEeeec-----eEEEee
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEP--LPRISWSK--DEAEFV------E-------------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k--~g~~i~------~-------------~~~~~~~~~~-----sL~I~~  197 (940)
                      -...+++|++++|.|.+.|..  .-.+.|++  .|+.+.      .             ..++.+..+.     .|.|.+
T Consensus         8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~   87 (120)
T d1dlfh_           8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT   87 (120)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence            345678999999999998754  33688987  343221      0             1244444332     489999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        88 L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          88 LRAEDTGIYYCTGI  101 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccCCCceEEEeeEe
Confidence            99999999999754

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.91  E-value=0.059  Score=47.31  Aligned_cols=69  Identities=22%  Similarity=0.491  Sum_probs=49.2

Q ss_pred             ceeecCCCeEEEEEeecCcCCC--eEEEEeC--Ce------eec-c----------CCcEEEeeec-----eEEEecCCC
Q psy11143        331 DMRAPAGSSVEIPCKPDGEPLP--RISWSKD--EA------EFV-E----------DRNHKIHRTG-----SLRLYNIGP  384 (940)
Q Consensus       331 ~~~v~~G~~vtL~C~v~g~P~p--~i~W~k~--g~------~i~-~----------~~~~~i~~~~-----sL~I~~v~~  384 (940)
                      ...+++|++++|+|.+.|....  .+.|.+.  |+      .|. .          ..|+.++.+.     .|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            3467889999999999987655  6778752  21      111 1          2466676532     489999999


Q ss_pred             CCCeEEEEEEEeCCe
Q psy11143        385 QDSGLYRCTASNLLG  399 (940)
Q Consensus       385 ~D~G~YtC~A~N~~G  399 (940)
                      +|++.|.|......+
T Consensus        89 eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          89 EDTALYYCARLHYYG  103 (118)
T ss_dssp             GGCEEEEEEEEETTT
T ss_pred             CcceEEEeeEecCCC
Confidence            999999998766544

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.90  E-value=0.035  Score=49.16  Aligned_cols=66  Identities=20%  Similarity=0.428  Sum_probs=45.4

Q ss_pred             CceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEeecc
Q psy11143        146 FDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYNIG  199 (940)
Q Consensus       146 ~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~v~  199 (940)
                      -...+++|++++|.|.+.|....  .+.|++  .|+.+      ..           ..++.+..+.     .|.+.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~   87 (122)
T d1bz7b1           8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR   87 (122)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec
Confidence            34567899999999999986433  578887  33221      10           1344444332     48899999


Q ss_pred             cCCCceEEEEEE
Q psy11143        200 PQDSGLYRCTAS  211 (940)
Q Consensus       200 ~~DsG~YtC~a~  211 (940)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (122)
T d1bz7b1          88 SEDTAIYYCTRG   99 (122)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccCceEEEeecC
Confidence            999999999754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.89  E-value=0.033  Score=49.88  Aligned_cols=68  Identities=16%  Similarity=0.386  Sum_probs=46.4

Q ss_pred             CCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------cc-----------cCceEEeeec-----eEEEeec
Q psy11143        145 PFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYNI  198 (940)
Q Consensus       145 p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~v  198 (940)
                      +-...+++|+++.|.|.+.|...  -.+.|++  .|+.+      ..           ..++.+..+.     .|.|.++
T Consensus         7 SG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L   86 (135)
T d1ieha_           7 SGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSL   86 (135)
T ss_dssp             ECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESC
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeee
Confidence            33456889999999999998543  3588987  33222      11           1244444322     4899999


Q ss_pred             ccCCCceEEEEEEc
Q psy11143        199 GPQDSGLYRCTASN  212 (940)
Q Consensus       199 ~~~DsG~YtC~a~N  212 (940)
                      +.+|++.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (135)
T d1ieha_          87 KSEDTAVYYCAKYS  100 (135)
T ss_dssp             CSSSCEEEEEEEBS
T ss_pred             CcccceeeEEEEec
Confidence            99999999997643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.87  E-value=0.026  Score=50.47  Aligned_cols=68  Identities=19%  Similarity=0.430  Sum_probs=46.5

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCC--CeEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|++++|.|.+.|...  -.+.|.+  .|+.+      ..           ..++.+..+.     .|.+.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~s   85 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSS   85 (130)
T ss_dssp             ECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeee
Confidence            344567889999999999998543  3688887  33222      11           1234443332     388899


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtA~YYCAr~   99 (130)
T d1rzga1          86 LRSEDTAVFYCASP   99 (130)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCCCccEEEEEEEe
Confidence            99999999999854

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.87  E-value=0.02  Score=49.62  Aligned_cols=63  Identities=24%  Similarity=0.553  Sum_probs=41.6

Q ss_pred             EEecCCeEEEEEEeeccC--CCeEEEEEC--CEe------ecC----------CCCeEEEee----ceEEEEcccccCCC
Q psy11143         56 TYSTGSTSRITCLVEGHP--LPQMTWFHD--GNS------LDS----------DDHVTYEHD----GFVLVLNGVRESDA  111 (940)
Q Consensus        56 ~V~eGesv~L~C~v~g~P--~p~V~W~kd--g~~------I~~----------~~~~~~~~~----gs~L~I~~v~~~Ds  111 (940)
                      .|+.|++++|.|.++|..  .-.+.|+|.  |+-      |..          ..++.++.+    ...|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            367899999999998743  235788873  111      111          124444422    23589999999999


Q ss_pred             eEEEEEE
Q psy11143        112 GVYNCVA  118 (940)
Q Consensus       112 G~YtC~a  118 (940)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999965

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.87  E-value=0.027  Score=50.08  Aligned_cols=65  Identities=14%  Similarity=0.327  Sum_probs=44.0

Q ss_pred             ceeecCCCcEEEEEEeCCCCC----CeEEEee--CCeecc------c----------cCceEEeeec-----eEEEeecc
Q psy11143        147 DMRAPAGSSVEIPCKPDGEPL----PRISWSK--DEAEFV------E----------DRNHKIHRTG-----SLRLYNIG  199 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~v~g~P~----p~ItW~k--~g~~i~------~----------~~~~~~~~~~-----sL~I~~v~  199 (940)
                      ...+++|++++|.|.+.|...    ..+.|++  .|+.+.      .          ..++.+..+.     .|.|.+++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            456789999999999887432    2468987  333221      0          1244444322     39999999


Q ss_pred             cCCCceEEEEEE
Q psy11143        200 PQDSGLYRCTAS  211 (940)
Q Consensus       200 ~~DsG~YtC~a~  211 (940)
                      .+|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (123)
T d1r0ah1          89 TADTAIYYCAQS  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEeeccc
Confidence            999999999743

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.84  E-value=0.01  Score=51.41  Aligned_cols=66  Identities=15%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             ecCCeEEEEEEeec-cCC---CeEEEEECCEeecCCC--CeEEEeec-----eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143         58 STGSTSRITCLVEG-HPL---PQMTWFHDGNSLDSDD--HVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEG  123 (940)
Q Consensus        58 ~eGesv~L~C~v~g-~P~---p~V~W~kdg~~I~~~~--~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g  123 (940)
                      ..+.+++|.|.+.+ .|.   .+|+|+++|..+....  ......++     +.|.|..-.....-.|+|.|.+..-
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l   90 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF   90 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCC
Confidence            45778999999988 343   4889999998765421  11111222     2244443333345569999998653

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.83  E-value=0.046  Score=48.50  Aligned_cols=68  Identities=19%  Similarity=0.424  Sum_probs=46.1

Q ss_pred             CcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CEe------ecC-----------CCCeEEEee----ceEEEEcccc
Q psy11143         53 VSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GNS------LDS-----------DDHVTYEHD----GFVLVLNGVR  107 (940)
Q Consensus        53 ~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~~------I~~-----------~~~~~~~~~----gs~L~I~~v~  107 (940)
                      ....|+.|++++|.|.++|...  --+.|+|.  |+.      |..           ..++.++.+    ...|.|.+++
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~   87 (125)
T d1op3h1           8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (125)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence            4456889999999999987542  35788873  111      111           124555532    2348999999


Q ss_pred             cCCCeEEEEEEEe
Q psy11143        108 ESDAGVYNCVAQN  120 (940)
Q Consensus       108 ~~DsG~YtC~a~n  120 (940)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999997643

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.82  E-value=0.031  Score=49.51  Aligned_cols=68  Identities=22%  Similarity=0.385  Sum_probs=46.8

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+....+++|+++.|.|.+.|....  .+.|.+  .|+.+      ..           ..++.+..+.     .|.+.+
T Consensus         6 esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s   85 (124)
T d1yedb1           6 QSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS   85 (124)
T ss_dssp             ECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred             eeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence            3445678899999999999985433  588887  33222      11           1344444332     388999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAR~   99 (124)
T d1yedb1          86 LKSEDSAVYFCTRW   99 (124)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCCCcceEEEeccc
Confidence            99999999999753

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.80  E-value=0.033  Score=49.27  Aligned_cols=70  Identities=19%  Similarity=0.415  Sum_probs=47.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....+++|+++.|.|.++|...  --+.|+|.  |+      .|..           ..++.++.+    ...|.|.
T Consensus         5 ~esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~   84 (124)
T d1yedb1           5 QQSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLS   84 (124)
T ss_dssp             EECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEE
T ss_pred             EeeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccc
Confidence            3455667899999999999998543  36788872  11      1211           124444422    2348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          85 SLKSEDSAVYFCTRW   99 (124)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCCCcceEEEeccc
Confidence            999999999999753

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.79  E-value=0.063  Score=48.08  Aligned_cols=68  Identities=22%  Similarity=0.415  Sum_probs=46.7

Q ss_pred             cCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeecc-------c----------cCceEEeeec-----eEEEee
Q psy11143        144 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEFV-------E----------DRNHKIHRTG-----SLRLYN  197 (940)
Q Consensus       144 ~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i~-------~----------~~~~~~~~~~-----sL~I~~  197 (940)
                      .+-...+++|+++.|.|.+.|....  .+.|.+  .|+.+.       .          ..++.+..+.     .|.+.+
T Consensus         5 esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~   84 (133)
T d1rzfh1           5 QSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG   84 (133)
T ss_dssp             ECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence            3445678899999999999986543  578877  332211       0          2344444432     488999


Q ss_pred             cccCCCceEEEEEE
Q psy11143        198 IGPQDSGLYRCTAS  211 (940)
Q Consensus       198 v~~~DsG~YtC~a~  211 (940)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          85 LRSDDTAVYYCASN   98 (133)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCCCCCEEEEeeec
Confidence            99999999999654

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=94.78  E-value=0.033  Score=48.97  Aligned_cols=67  Identities=21%  Similarity=0.429  Sum_probs=0.0

Q ss_pred             EecCCceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeeccc----------------cCceEEeeece-----EEEe
Q psy11143        142 VVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEFVE----------------DRNHKIHRTGS-----LRLY  196 (940)
Q Consensus       142 ~~~p~~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i~~----------------~~~~~~~~~~s-----L~I~  196 (940)
                      ........+++|+++.|.|.+.|....  .+.|.+  .|+.+.-                ..++.+..+..     |.|.
T Consensus         4 L~eSg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~   83 (118)
T d1lo4h1           4 LVETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMS   83 (118)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEEC
T ss_pred             EeeECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccc


Q ss_pred             ecccCCCceEEE
Q psy11143        197 NIGPQDSGLYRC  208 (940)
Q Consensus       197 ~v~~~DsG~YtC  208 (940)
                      +++.+|++.|.|
T Consensus        84 ~l~~eDtA~YyC   95 (118)
T d1lo4h1          84 RLRSEDTAIYYC   95 (118)
T ss_dssp             SCCGGGCEEEEE
T ss_pred             cccCCcceEEEe

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.022  Score=49.15  Aligned_cols=76  Identities=18%  Similarity=0.287  Sum_probs=45.4

Q ss_pred             eCCCeeEEecCCeEEEEEEEeee-CC---CeEEEEECCeecCCCCceE--EeecCe-----EEEEeeeccCCCeEEEEEE
Q psy11143        234 QRPVSTTYSTGSTSRITCLVEGH-PL---PQMTWFHDGNSLDSDDHVT--YEHDGF-----VLVLNGVRESDAGVYNCVA  302 (940)
Q Consensus       234 ~~p~~~~v~~G~~v~L~C~v~G~-P~---p~ItW~k~g~~l~~~~~~~--~~~~g~-----sL~I~~v~~~DsG~YtC~A  302 (940)
                      .+|....+..+..++|.|.+.|. |.   .++.|++++..........  ...++.     .|.|..-.......|+|++
T Consensus         6 ~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V   85 (103)
T d1fp5a1           6 SRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRV   85 (103)
T ss_dssp             ECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred             eCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEE
Confidence            34444445567889999999985 43   2778888887665432211  112222     1444333334456899999


Q ss_pred             EeCCCCc
Q psy11143        303 QNSEGSA  309 (940)
Q Consensus       303 ~N~~Gs~  309 (940)
                      .+.....
T Consensus        86 ~H~~l~~   92 (103)
T d1fp5a1          86 THPHLPR   92 (103)
T ss_dssp             ECSSCSS
T ss_pred             EECCCCC
Confidence            9875433

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.77  E-value=0.057  Score=46.37  Aligned_cols=64  Identities=22%  Similarity=0.454  Sum_probs=41.3

Q ss_pred             CCCeEEEEEeecCcCCC--eEEEEeC--Cee------ec-----------cCCcEEEeeec-----eEEEecCCCCCCeE
Q psy11143        336 AGSSVEIPCKPDGEPLP--RISWSKD--EAE------FV-----------EDRNHKIHRTG-----SLRLYNIGPQDSGL  389 (940)
Q Consensus       336 ~G~~vtL~C~v~g~P~p--~i~W~k~--g~~------i~-----------~~~~~~i~~~~-----sL~I~~v~~~D~G~  389 (940)
                      +|++++|+|++.|....  .+.|.+.  |+.      |.           -..|+.++.+.     .|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58999999999987655  6888862  211      11           12466665432     59999999999999


Q ss_pred             EEEEEEeCCe
Q psy11143        390 YRCTASNLLG  399 (940)
Q Consensus       390 YtC~A~N~~G  399 (940)
                      |.|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9997655443

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.75  E-value=0.023  Score=50.82  Aligned_cols=70  Identities=19%  Similarity=0.458  Sum_probs=47.4

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEee----ceEEEEc
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHD----GFVLVLN  104 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~----gs~L~I~  104 (940)
                      .++....++.|++++|+|.++|...  .-+.|+|.  |+      .|..           ..++.++.+    ...|.|.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           5 VQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             EECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            3455667899999999999987543  36788863  21      1111           123444422    2348999


Q ss_pred             ccccCCCeEEEEEEE
Q psy11143        105 GVRESDAGVYNCVAQ  119 (940)
Q Consensus       105 ~v~~~DsG~YtC~a~  119 (940)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999854

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.74  E-value=0.044  Score=48.84  Aligned_cols=68  Identities=25%  Similarity=0.574  Sum_probs=45.6

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEeec----eEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHDG----FVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~g----s~L~I~~v  106 (940)
                      .....|+.|+++.|+|.++|...  -.+.|+|.  |+      .|..           ..++.++.+.    ..|.|.++
T Consensus         6 sG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l   85 (126)
T d1rjca1           6 SGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSL   85 (126)
T ss_dssp             BCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEecc
Confidence            34566889999999999988543  36789873  21      1111           1244444322    23899999


Q ss_pred             ccCCCeEEEEEEE
Q psy11143        107 RESDAGVYNCVAQ  119 (940)
Q Consensus       107 ~~~DsG~YtC~a~  119 (940)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYYCAr~   98 (126)
T d1rjca1          86 KPEDTAMYYCAAD   98 (126)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCceeEEEee
Confidence            9999999999754

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=94.71  E-value=0.035  Score=49.40  Aligned_cols=69  Identities=23%  Similarity=0.509  Sum_probs=46.7

Q ss_pred             CCcEEEecCCeEEEEEEeeccCC--CeEEEEEC--CE------eecC-----------CCCeEEEeec----eEEEEccc
Q psy11143         52 PVSTTYSTGSTSRITCLVEGHPL--PQMTWFHD--GN------SLDS-----------DDHVTYEHDG----FVLVLNGV  106 (940)
Q Consensus        52 p~~~~V~eGesv~L~C~v~g~P~--p~V~W~kd--g~------~I~~-----------~~~~~~~~~g----s~L~I~~v  106 (940)
                      .....+++|++++|+|.++|...  --+.|+|.  |+      .|..           ..++.++.+.    ..|.|.++
T Consensus         7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L   86 (126)
T d1dfbh1           7 SGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSL   86 (126)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeee
Confidence            34556889999999999998543  36788873  21      1211           1234444322    34899999


Q ss_pred             ccCCCeEEEEEEEe
Q psy11143        107 RESDAGVYNCVAQN  120 (940)
Q Consensus       107 ~~~DsG~YtC~a~n  120 (940)
                      +.+|++.|.|....
T Consensus        87 ~~eDtavYYCAr~~  100 (126)
T d1dfbh1          87 RAEDMALYYCVKGR  100 (126)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCcceEEEEEecc
Confidence            99999999997643

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.019  Score=47.19  Aligned_cols=61  Identities=25%  Similarity=0.478  Sum_probs=42.9

Q ss_pred             ecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC-eEEEeeceEEEEccccc-CCCeEEEEEEEe
Q psy11143         58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRE-SDAGVYNCVAQN  120 (940)
Q Consensus        58 ~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~-~DsG~YtC~a~n  120 (940)
                      ..|.+|+|+|.-.  ....|.|.+++..+..... ..+..+..-|.+..... +++|.|+|.+..
T Consensus         8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            3699999999642  4457999999998865322 22223333457788766 799999999853

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.021  Score=47.50  Aligned_cols=53  Identities=26%  Similarity=0.598  Sum_probs=39.8

Q ss_pred             ecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEccccc-CCCeEEEEEEE
Q psy11143         58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE-SDAGVYNCVAQ  119 (940)
Q Consensus        58 ~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~-~DsG~YtC~a~  119 (940)
                      ..|.+|+|+|...+.  ..|.|.+++..++...       +..|.+.+... +|+|.|.|...
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~-------~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKH-------DKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCC-------CSEEEEESCCTTTSCEEEEEECS
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCC-------CcEEEEccccccccCcceEEecC
Confidence            469999999997653  3699999999987532       23456666554 89999999643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.65  E-value=0.051  Score=48.40  Aligned_cols=65  Identities=22%  Similarity=0.452  Sum_probs=44.4

Q ss_pred             ceeecCCCcEEEEEEeCCCCCC--eEEEee--CCeec------cc-----------cCceEEeeec-----eEEEeeccc
Q psy11143        147 DMRAPAGSSVEIPCKPDGEPLP--RISWSK--DEAEF------VE-----------DRNHKIHRTG-----SLRLYNIGP  200 (940)
Q Consensus       147 ~~~v~~Ge~vtL~C~v~g~P~p--~ItW~k--~g~~i------~~-----------~~~~~~~~~~-----sL~I~~v~~  200 (940)
                      ...+++|+++.|.|.+.|....  .+.|++  .|+.+      ..           ..++.+..+.     .|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            4568899999999999985433  688987  33322      11           1234443321     389999999


Q ss_pred             CCCceEEEEEE
Q psy11143        201 QDSGLYRCTAS  211 (940)
Q Consensus       201 ~DsG~YtC~a~  211 (940)
                      +|++.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999754

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.64  E-value=0.04  Score=48.57  Aligned_cols=70  Identities=21%  Similarity=0.509  Sum_probs=46.8

Q ss_pred             eCCCcEEEecCCeEEEEEEeeccCCC--eEEEEEC--CEe------ec---CC----------CCeEEEee----ceEEE
Q psy11143         50 QRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHD--GNS------LD---SD----------DHVTYEHD----GFVLV  102 (940)
Q Consensus        50 ~~p~~~~V~eGesv~L~C~v~g~P~p--~V~W~kd--g~~------I~---~~----------~~~~~~~~----gs~L~  102 (940)
                      .+.....+++|++++|.|.++|....  -+.|+|.  |+.      |.   ..          .++.++.+    ...|.
T Consensus         5 ~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~   84 (121)
T d1nfdf1           5 VESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQ   84 (121)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeece
Confidence            34456678999999999999986543  5678872  221      11   11          12233321    23389


Q ss_pred             EcccccCCCeEEEEEEE
Q psy11143        103 LNGVRESDAGVYNCVAQ  119 (940)
Q Consensus       103 I~~v~~~DsG~YtC~a~  119 (940)
                      |.+++.+|++.|.|...
T Consensus        85 ~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          85 MNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EESCCGGGCEECEEEEE
T ss_pred             ecccCCCcceEEEEecc
Confidence            99999999999999754

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.014  Score=50.65  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             EecCCeEEEEEEeecc-CC---CeEEEEECCEeecCCC--CeEEEeece-----EEEEcccccCCCeEEEEEEEeCCCc
Q psy11143         57 YSTGSTSRITCLVEGH-PL---PQMTWFHDGNSLDSDD--HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS  124 (940)
Q Consensus        57 V~eGesv~L~C~v~g~-P~---p~V~W~kdg~~I~~~~--~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~  124 (940)
                      +..++.++|.|.+.|. |.   .++.|.+++..+....  ......+|.     .|.|..-.....-.|+|.|.+....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            4568899999999984 43   4788999998875421  111122232     2455444444456899999987654