Psyllid ID: psy11160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 598 | 2.2.26 [Sep-21-2011] | |||||||
| O02373 | 476 | UDP-glucose 6-dehydrogena | yes | N/A | 0.740 | 0.930 | 0.618 | 0.0 | |
| Q5F3T9 | 494 | UDP-glucose 6-dehydrogena | yes | N/A | 0.732 | 0.886 | 0.534 | 1e-152 | |
| O60701 | 494 | UDP-glucose 6-dehydrogena | yes | N/A | 0.732 | 0.886 | 0.530 | 1e-151 | |
| O70475 | 493 | UDP-glucose 6-dehydrogena | yes | N/A | 0.735 | 0.892 | 0.530 | 1e-150 | |
| P12378 | 494 | UDP-glucose 6-dehydrogena | yes | N/A | 0.735 | 0.890 | 0.530 | 1e-150 | |
| O70199 | 493 | UDP-glucose 6-dehydrogena | yes | N/A | 0.735 | 0.892 | 0.526 | 1e-150 | |
| Q5R7B3 | 494 | UDP-glucose 6-dehydrogena | yes | N/A | 0.732 | 0.886 | 0.528 | 1e-150 | |
| Q19905 | 481 | UDP-glucose 6-dehydrogena | yes | N/A | 0.735 | 0.914 | 0.529 | 1e-145 | |
| Q9FM01 | 480 | Probable UDP-glucose 6-de | yes | N/A | 0.729 | 0.908 | 0.504 | 1e-144 | |
| Q9LIA8 | 480 | Probable UDP-glucose 6-de | no | N/A | 0.727 | 0.906 | 0.498 | 1e-143 |
| >sp|O02373|UGDH_DROME UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/545 (61%), Positives = 386/545 (70%), Gaps = 102/545 (18%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+CCIGAGYVGG PTC+V+ALKCP+I +T+VDKS ER
Sbjct: 3 VCCIGAGYVGG-------------------------PTCAVMALKCPDIVITLVDKSSER 37
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I QWNS+KLPIYEPGLDEVVKK R+VNLFFSTDI++AI
Sbjct: 38 IAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAI---------------------- 75
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+ ADL ++ + KT +GRAADL
Sbjct: 76 KEADLIFIS---------------------------------VNTPTKTCGNGKGRAADL 102
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
KYVE+AARMIAEIA NKIVVEKSTVPVRAAESIM++L+AN K + + ILSNPEFL+EG
Sbjct: 103 KYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DL NADR+LIGGEETPEG+ A+E LSW+YEHWIP+++ILTTNTWSSELSKLAANAF
Sbjct: 163 TAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISSINSLSAVCEATGADVSEVA+AVGLDSRIG+KFLQASVGFGGSCFQKDILNL+Y
Sbjct: 223 LAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIY 282
Query: 368 ICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTGDTR 412
ICE LNLPEVA+YWQQ + ESLFNTVSDK IAILGFAFKKNTGDTR
Sbjct: 283 ICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL----DPELLDHNAVSILDDPYDT 468
E+ AI VC+TLL EGA L IYDPKVEP QII DL PE + AV I DPY
Sbjct: 343 ETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKV-KKAVQIHSDPYSA 401
Query: 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLN 528
V+ THA+V+CTEWDEFV LD+KRIY+ MMKPAYIFDGRKIL+H+ L IGF+V T+
Sbjct: 402 VRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTI--GK 459
Query: 529 EYQKT 533
+YQ+T
Sbjct: 460 KYQRT 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate and heparan sulfate. Required for wingless signaling in different tissues. Drosophila melanogaster (taxid: 7227) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q5F3T9|UGDH_CHICK UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1387), Expect = e-152, Method: Compositional matrix adjust.
Identities = 289/541 (53%), Positives = 345/541 (63%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP IQVTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAQMCPKIQVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS+ LPIYEPGL EVV+ R NLFFST I AI
Sbjct: 39 EARINAWNSDTLPIYEPGLKEVVESCRGRNLFFSTSIDDAI------------------- 79
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
R ADL ++ + KT +GRA
Sbjct: 80 ---READLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+++PEG A+ +L VYEHW+P++ ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA+A+G D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCEATGADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGAKL IYDPKV QII DL P + + N VS I DP
Sbjct: 344 DTRESSSIYISKYLMDEGAKLHIYDPKVPKEQIILDLSH--PGVSEDNQVSRLVTISQDP 401
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 402 YEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIET 461
Query: 524 V 524
+
Sbjct: 462 I 462
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O60701|UGDH_HUMAN UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 287/541 (53%), Positives = 346/541 (63%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 39 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 81
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 82 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 344 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 401
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 402 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 461
Query: 524 V 524
+
Sbjct: 462 I 462
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O70475|UGDH_MOUSE UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/539 (53%), Positives = 340/539 (63%), Gaps = 99/539 (18%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI
Sbjct: 39 EARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAI------------------- 79
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
R ADL ++ + KT +GRA
Sbjct: 80 ---READLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+ +L VYEHW+P++ ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDH--NAVSILDDPYD 467
DTRES +I++ + L+ EGA L IYDPKV QI+ DL D V+I DPY+
Sbjct: 344 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVSRLVTISKDPYE 403
Query: 468 TVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHTV 524
HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H L IGF + T+
Sbjct: 404 ACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETI 462
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P12378|UGDH_BOVIN UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/539 (53%), Positives = 343/539 (63%), Gaps = 99/539 (18%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDIN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 39 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 81
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 82 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKL A
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNA--VSILDDPYD 467
DTRES +I++ + L+ EGA L IYDPKV QI+ DL D A V+I DPY+
Sbjct: 344 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQVARLVTISKDPYE 403
Query: 468 TVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHTV 524
HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T+
Sbjct: 404 ACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETI 462
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O70199|UGDH_RAT UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 284/539 (52%), Positives = 341/539 (63%), Gaps = 99/539 (18%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIARMCPEIRVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI
Sbjct: 39 EARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAI------------------- 79
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
R ADL ++ + KT +GRA
Sbjct: 80 ---READLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+P++ ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CE+TGADV EVA A+G+D RIG KFL+ASVGFGG CFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCESTGADVEEVATAIGMDQRIGNKFLKASVGFGGGCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDH--NAVSILDDPYD 467
DTRES +I++ + L+ EGA L IYDPKV QI+ DL D V+I DPY+
Sbjct: 344 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVSRLVTISKDPYE 403
Query: 468 TVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHTV 524
HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T+
Sbjct: 404 ACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETI 462
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q5R7B3|UGDH_PONAB UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1367), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/541 (52%), Positives = 345/541 (63%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA P I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAHMRPEIRVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 39 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 81
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 82 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 344 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 401
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 402 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 461
Query: 524 V 524
+
Sbjct: 462 I 462
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q19905|UGDH_CAEEL UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/508 (52%), Positives = 335/508 (65%), Gaps = 68/508 (13%)
Query: 32 QVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTR 91
+V V YVGGPTC++IA KCP+I VTVVD + +I +WNS+KLPIYEPGLDE+V R
Sbjct: 11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAAR 70
Query: 92 DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKI 151
NLFFS+DI AI +A LIFISVNTPTK +G GKG A DLKYVE+ +R IA+ A KI
Sbjct: 71 GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKI 130
Query: 152 VVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKS 211
VVEKSTVPV+AAESI +L+ K N +LK+ ++ ++ + + E +
Sbjct: 131 VVEKSTVPVKAAESIGCILREAQKNN-------ENLKF---------QVLSNPEFLAEGT 174
Query: 212 TVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYA 271
+ + L+NP DR+LIGGE +PEG
Sbjct: 175 AM----------------------KDLANP---------------DRVLIGGESSPEGLQ 197
Query: 272 AIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSE 331
A+ L +YE+W+PR I+TTNTWSSELSKL ANAFLAQRISSINS+SAVCEATGA++SE
Sbjct: 198 AVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEISE 257
Query: 332 VAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQ--------- 382
VA AVG D+RIG+KFLQASVGFGGSCFQKD+L+LVY+CE LNLP+VA YWQ
Sbjct: 258 VAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQ 317
Query: 383 ------QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK 436
++ LFNTV+DK IAI GFAFKKNTGDTRES AIHV + L+ E AKL +YDPK
Sbjct: 318 RRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPK 377
Query: 437 VEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM 496
V+ SQ++ DL + +++ DPY + HAIVV TEWDEFV L+Y +I+ M
Sbjct: 378 VQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDM 437
Query: 497 MKPAYIFDGRKILNHDALLDIGFNVHTV 524
PA IFDGR IL+ AL +IGF +
Sbjct: 438 QHPAAIFDGRLILDQKALREIGFRTFAI 465
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q9FM01|UGDH2_ARATH Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 513 bits (1321), Expect = e-144, Method: Compositional matrix adjust.
Identities = 274/543 (50%), Positives = 349/543 (64%), Gaps = 107/543 (19%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
ICCIGAGYVGG PT +VIALKCP+I+V VVD S R
Sbjct: 4 ICCIGAGYVGG-------------------------PTMAVIALKCPDIEVAVVDISVPR 38
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I WNS++LPIYEPGLD++VK+ R NLFFSTD
Sbjct: 39 INAWNSDQLPIYEPGLDDIVKQCRGKNLFFSTD--------------------------- 71
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
VEK VR A+ + + KT G+AADL
Sbjct: 72 -------------------------VEKH---VREADIVFVSVNTPTKTTGLGAGKAADL 103
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
Y E+AARMIA+++ +KIVVEKSTVPV+ AE+I +L N K ++FQILSNPEFL+EG
Sbjct: 104 TYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNSK-GIKFQILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DLFN DR+LIGG ETPEG+ A+++L VY +W+P I+TTN WS+ELSKLAANAF
Sbjct: 163 TAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISS+N++SA+CE+TGADV++V+ AVG DSRIG+KFL ASVGFGGSCFQKDILNLVY
Sbjct: 223 LAQRISSVNAMSALCESTGADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVY 282
Query: 368 ICECLNLPEVASYWQQLYE---------------SLFNTVSDKHIAILGFAFKKNTGDTR 412
IC+C LPEVA YW+Q+ + S+FNTVS+K +AILGFAFKK+TGDTR
Sbjct: 283 ICQCNGLPEVAEYWKQVIKINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDL--KELDPELLDH---------NAVSI 461
E+PAI VC+ LL + A++ IYDP+V QI +DL K+ D + H VS+
Sbjct: 343 ETPAIDVCKGLLGDKAQISIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSV 402
Query: 462 LDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNV 521
D Y+ K+ HA+ V TEWDEF +LDY++I++ M KPA+IFDGR I+N + L +IGF V
Sbjct: 403 TWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIV 462
Query: 522 HTV 524
+++
Sbjct: 463 YSI 465
|
Provides UDP-glucuronic acid for hemicellulose precursors. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q9LIA8|UGDH1_ARATH Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 271/544 (49%), Positives = 343/544 (63%), Gaps = 109/544 (20%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
ICCIGAGYVGG PT +VIALKCP+++V VVD S R
Sbjct: 4 ICCIGAGYVGG-------------------------PTMAVIALKCPDVEVAVVDISVPR 38
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I WNS+ LPIYEPGLD+VVK+ R NLFFSTD
Sbjct: 39 INAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTD--------------------------- 71
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
VEK VR A+ + + KT G+AADL
Sbjct: 72 -------------------------VEKH---VREADIVFVSVNTPTKTRGLGAGKAADL 103
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
Y E+AARMIA+++ +KIVVEKSTVPV+ AE+I +L N K ++FQILSNPEFL+EG
Sbjct: 104 TYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DLFN DR+LIGG ETPEG+ A+++L VY HW+P I+TTN WS+ELSKLAANAF
Sbjct: 163 TAIKDLFNPDRVLIGGRETPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISS+N++SA+CEATGADV++V+ AVG DSRIG KFL +SVGFGGSCFQKDILNLVY
Sbjct: 223 LAQRISSVNAMSALCEATGADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVY 282
Query: 368 ICECLNLPEVASYWQQLYE---------------SLFNTVSDKHIAILGFAFKKNTGDTR 412
ICEC LPEVA YW+Q+ + S+FN+VS+K IA+LGFAFKK+TGDTR
Sbjct: 283 ICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDH------------NAVS 460
E+PAI VC+ LL + A+L IYDP+V QI +DL ++ DH V+
Sbjct: 343 ETPAIDVCKGLLEDKARLSIYDPQVTEDQIQRDL-SMNKFDWDHPLHLQPMSPTTVKQVT 401
Query: 461 ILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFN 520
+ D Y+ K+ H I + TEWDEF LD+++I++ M KPA++FDGR I+N L +IGF
Sbjct: 402 VTWDAYEATKDAHGICIMTEWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFI 461
Query: 521 VHTV 524
V+++
Sbjct: 462 VYSI 465
|
Provides UDP-glucuronic acid for hemicellulose precursors. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 598 | ||||||
| 195427489 | 476 | GK17198 [Drosophila willistoni] gi|19415 | 0.740 | 0.930 | 0.642 | 0.0 | |
| 125980317 | 476 | GA10050 [Drosophila pseudoobscura pseudo | 0.740 | 0.930 | 0.631 | 0.0 | |
| 328792019 | 506 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 0.717 | 0.847 | 0.676 | 0.0 | |
| 340727972 | 479 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 0.735 | 0.918 | 0.642 | 0.0 | |
| 307170915 | 480 | UDP-glucose 6-dehydrogenase [Camponotus | 0.734 | 0.914 | 0.636 | 0.0 | |
| 380017073 | 506 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 0.717 | 0.847 | 0.674 | 0.0 | |
| 194752105 | 476 | GF10882 [Drosophila ananassae] gi|190625 | 0.729 | 0.915 | 0.623 | 0.0 | |
| 220942614 | 477 | sgl-PA [synthetic construct] | 0.740 | 0.928 | 0.618 | 0.0 | |
| 17136908 | 476 | sugarless [Drosophila melanogaster] gi|1 | 0.740 | 0.930 | 0.618 | 0.0 | |
| 195492396 | 476 | GE20458 [Drosophila yakuba] gi|194180073 | 0.740 | 0.930 | 0.618 | 0.0 |
| >gi|195427489|ref|XP_002061809.1| GK17198 [Drosophila willistoni] gi|194157894|gb|EDW72795.1| GK17198 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/545 (64%), Positives = 394/545 (72%), Gaps = 102/545 (18%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+CCIGAGYVGG PTC+V+ALKCP+I +T+VDKS ER
Sbjct: 3 VCCIGAGYVGG-------------------------PTCAVMALKCPDIVITLVDKSSER 37
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I QWNS+KLPIYEPGLDEVVKK R+VNLFFSTDI++AI+ A LIFISVNTPTK +G G
Sbjct: 38 IAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAIKDADLIFISVNTPTKI--SGNG 95
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+GRAADL
Sbjct: 96 -----------------------------------------------------KGRAADL 102
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
KYVE+AARMIAEIA NKIVVEKSTVPVRAAESIM++L+AN K + + ILSNPEFL+EG
Sbjct: 103 KYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DL NADR+LIGGEETPEG+ A+E LSW+YEHWIP+KHILTTNTWSSELSKLAANAF
Sbjct: 163 TAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKKHILTTNTWSSELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISSINSLSAVCEATGADVSEVA+AVGLDSRIG+KFLQASVGFGGSCFQKDILNL+Y
Sbjct: 223 LAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIY 282
Query: 368 ICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTGDTR 412
ICE LNLPEVA+YWQQ + ESLFNTVSDK IAILGFAFKKNTGDTR
Sbjct: 283 ICENLNLPEVAAYWQQVIDMNDYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL----DPELLDHNAVSILDDPYDT 468
E+ AI VC+TLL EGAKL IYDPKVEP QII DL PE + AV I DPY
Sbjct: 343 ETAAITVCQTLLEEGAKLDIYDPKVEPEQIIDDLTHPSVTESPENV-KKAVQIHSDPYSA 401
Query: 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLN 528
V++THA+VVCTEWDEFV LDY RIY+ MMKPAYIFDGRKIL+H+ L IGF+V T+
Sbjct: 402 VRSTHALVVCTEWDEFVDLDYTRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTI--GK 459
Query: 529 EYQKT 533
+YQ+T
Sbjct: 460 KYQRT 464
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|125980317|ref|XP_001354183.1| GA10050 [Drosophila pseudoobscura pseudoobscura] gi|54642487|gb|EAL31235.1| GA10050 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/545 (63%), Positives = 393/545 (72%), Gaps = 102/545 (18%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+CCIGAGYVGG PTC+V+ALKCP+I +T+VDKS ER
Sbjct: 3 VCCIGAGYVGG-------------------------PTCAVMALKCPDIVITLVDKSVER 37
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I QWNS+KLPIYEPGLDEVVKK R+VNLFFSTDI++AI++A LIFISVNTPTK +G G
Sbjct: 38 IAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKV--SGNG 95
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+GRAADL
Sbjct: 96 -----------------------------------------------------KGRAADL 102
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
KYVE+AARMIAEIA NKIVVEKSTVPVRAAESIM++L+AN K + + ILSNPEFL+EG
Sbjct: 103 KYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DL NADR+LIGGEET EG+ A+ LSW+YEHWIP++HILTTNTWSSELSKLAANAF
Sbjct: 163 TAINDLLNADRVLIGGEETTEGHEAVAKLSWIYEHWIPKQHILTTNTWSSELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISSINSLSAVCEATGADVSEVA+AVGLDSRIG+KFLQASVGFGGSCFQKDILNL+Y
Sbjct: 223 LAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIY 282
Query: 368 ICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTGDTR 412
ICE LNLPEVA+YWQQ + ESLFNTVSDK IAILGFAFKKNTGDTR
Sbjct: 283 ICENLNLPEVATYWQQVIDMNDYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL----DPELLDHNAVSILDDPYDT 468
E+ AI VC+TLL EGAKL IYDPKVEP QII DL PE + AV I DPY
Sbjct: 343 ETAAITVCQTLLEEGAKLDIYDPKVEPEQIIDDLTHPSVTESPENV-KKAVQIHSDPYSA 401
Query: 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLN 528
V+ THA+V+CTEWDEFV LD++RIY+ MMKPAYIFDGRKIL+H+ L IGF+V T+
Sbjct: 402 VRATHALVICTEWDEFVDLDFQRIYQSMMKPAYIFDGRKILDHERLHQIGFHVQTI--GK 459
Query: 529 EYQKT 533
+YQ++
Sbjct: 460 KYQRS 464
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328792019|ref|XP_396801.3| PREDICTED: UDP-glucose 6-dehydrogenase-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/504 (67%), Positives = 375/504 (74%), Gaps = 75/504 (14%)
Query: 40 YVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFST 99
YVGGPTCSVIALKCP IQVTVVDKS+ERI QWNS KLPIYEPGLDEVV+K R NLFFST
Sbjct: 40 YVGGPTCSVIALKCPEIQVTVVDKSKERIAQWNSEKLPIYEPGLDEVVRKCRGKNLFFST 99
Query: 100 DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159
DI++AIQ+A LIF ++ T T G G
Sbjct: 100 DIETAIQEADLIF--ISVNTPTKTFGNG-------------------------------- 125
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
+GRAADLKYVE+AARMIAEIAT NKIVVEKSTVPVRAAE
Sbjct: 126 ---------------------KGRAADLKYVESAARMIAEIATGNKIVVEKSTVPVRAAE 164
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SIMN+L+ANHK V QILSNPEFL+EGTA+ DL NADR+LIGGE++PEG AAIE L V
Sbjct: 165 SIMNILRANHKPGVSCQILSNPEFLAEGTAIEDLVNADRVLIGGEDSPEGQAAIEELCKV 224
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHWIPRK+ILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVA+AVGLD
Sbjct: 225 YEHWIPRKNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVGLD 284
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQ---------------L 384
SRIG+KFL ASVGFGGSCFQKDILNLVYICECLNLPEVA+YWQQ +
Sbjct: 285 SRIGSKFLHASVGFGGSCFQKDILNLVYICECLNLPEVAAYWQQVIDMNEYQKSRFSAKV 344
Query: 385 YESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
ESLFNTV+DK I++LGFAFKKNTGDTRESPAIHV +TLL EGA L IYDPKVE SQI++
Sbjct: 345 IESLFNTVTDKRISMLGFAFKKNTGDTRESPAIHVAKTLLDEGAMLHIYDPKVEESQIVE 404
Query: 445 DLKEL----DPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPA 500
DL DPE + + ++I D Y K THAIV+CTEWDEFV LDYKRIY MMKPA
Sbjct: 405 DLTHPSVTNDPEHV-KSRINIYKDAYSATKGTHAIVLCTEWDEFVELDYKRIYINMMKPA 463
Query: 501 YIFDGRKILNHDALLDIGFNVHTV 524
YIFDGRKIL+HD L IGF V T+
Sbjct: 464 YIFDGRKILDHDKLQKIGFIVQTI 487
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340727972|ref|XP_003402307.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Bombus terrestris] gi|350400065|ref|XP_003485726.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/540 (64%), Positives = 382/540 (70%), Gaps = 100/540 (18%)
Query: 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK 63
TI IC IGAGYVGG PTCSVIALKCP IQVTVVDK
Sbjct: 2 TIRKICGIGAGYVGG-------------------------PTCSVIALKCPEIQVTVVDK 36
Query: 64 SEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFG 123
S+ERI QWNS KLPIYEPGLDEVV+K R NLFFSTDI++AIQ+
Sbjct: 37 SKERIAQWNSEKLPIYEPGLDEVVRKCRGKNLFFSTDIETAIQE---------------- 80
Query: 124 NGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGR 183
ADL ++ + KT +GR
Sbjct: 81 ------ADLIFIS---------------------------------VNTPTKTFGNGKGR 101
Query: 184 AADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243
AADLKYVE AARMIAEIAT +KIVVEKSTVPVRAAESIMN+L+ANHK V +QILSNPEF
Sbjct: 102 AADLKYVENAARMIAEIATGDKIVVEKSTVPVRAAESIMNILRANHKPGVSYQILSNPEF 161
Query: 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLA 303
L+EGTA+ DL NADR+LIGGE++PEG AAIE L VYEHWIPRK+ILTTNTWSSELSKLA
Sbjct: 162 LAEGTAIEDLVNADRVLIGGEDSPEGQAAIEELCKVYEHWIPRKNILTTNTWSSELSKLA 221
Query: 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDIL 363
ANAFLAQRISSINSLSAVCEATGADVSEVA+AVGLDSRIG+KFL ASVGFGGSCFQKDIL
Sbjct: 222 ANAFLAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLHASVGFGGSCFQKDIL 281
Query: 364 NLVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNT 408
NLVYICECLNLPEVA+YWQQ + ESLFNTV+DK I++LGFAFKKNT
Sbjct: 282 NLVYICECLNLPEVAAYWQQVIDMNEYQKSRFSAKVIESLFNTVTDKSISMLGFAFKKNT 341
Query: 409 GDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL----DPELLDHNAVSILDD 464
GDTRESPAIHV +TLL EGA L IYDPKVE SQII+DL DPE + + +SI D
Sbjct: 342 GDTRESPAIHVAKTLLDEGAMLHIYDPKVEESQIIEDLTHPSVTNDPEYV-KSRISIYKD 400
Query: 465 PYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
Y K+THAIV+CTEWDEFV LDYKRIY MMKPAYIFDGRKIL+HD L IGF V T+
Sbjct: 401 AYSVTKDTHAIVLCTEWDEFVELDYKRIYINMMKPAYIFDGRKILDHDRLQKIGFIVQTI 460
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307170915|gb|EFN63018.1| UDP-glucose 6-dehydrogenase [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/539 (63%), Positives = 381/539 (70%), Gaps = 100/539 (18%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIALKCP IQVTVVDKS
Sbjct: 4 IRKICCIGAGYVGG-------------------------PTCSVIALKCPEIQVTVVDKS 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
+ERI QWNS KLPIYEPGLDEVV+K R NLFFSTDI +AI++
Sbjct: 39 KERIAQWNSQKLPIYEPGLDEVVQKCRGTNLFFSTDIDTAIKE----------------- 81
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 82 -----ADLIFIS---------------------------------VNTPTKTFGNGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKYVE+AARMIAEIAT NKIVVEKSTVPVRAAESIMN+L+ANHK V +QILSNPEFL
Sbjct: 104 ADLKYVESAARMIAEIATGNKIVVEKSTVPVRAAESIMNILRANHKPGVSYQILSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL NADR+LIGGE++PEG AIE L VYEHWIPR++ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIEDLVNADRVLIGGEDSPEGQEAIEELCKVYEHWIPRENILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINSLSAVCEATGADVSEVA+AVGLDSRIG+KFL ASVGFGGSCFQKDILN
Sbjct: 224 NAFLAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLHASVGFGGSCFQKDILN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVYICECLNLPEVA+YWQQ + ESLFNTV+DK IA+LGFAFKKNTG
Sbjct: 284 LVYICECLNLPEVAAYWQQVIDMNEYQKSRFSAKVIESLFNTVTDKRIAMLGFAFKKNTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKE----LDPELLDHNAVSILDDP 465
DTRESPAIHV +TLL EGA L IYDPKVE +QIIQDL +PE + N +SI D
Sbjct: 344 DTRESPAIHVAKTLLDEGAVLHIYDPKVEETQIIQDLTHPSVTSNPEDV-KNRISIYKDA 402
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
Y KNTHAIV+CTEWDEF+ L+Y +IY GMMKPAYIFDGRKIL+H+ L IGF V T+
Sbjct: 403 YSATKNTHAIVLCTEWDEFIELNYIQIYAGMMKPAYIFDGRKILDHNRLQRIGFVVQTI 461
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380017073|ref|XP_003692490.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/504 (67%), Positives = 373/504 (74%), Gaps = 75/504 (14%)
Query: 40 YVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFST 99
YVGGPTCSVIALKCP IQVTVVDKS+ERI QWNS KLPIYEPGLDEVV+K R NLFFST
Sbjct: 40 YVGGPTCSVIALKCPEIQVTVVDKSKERIAQWNSEKLPIYEPGLDEVVRKCRGKNLFFST 99
Query: 100 DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159
DI++AIQ+ ADL ++
Sbjct: 100 DIETAIQE----------------------ADLIFIS----------------------- 114
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
+ KT +GRAADLKYVE+AARMIAEIAT NKIVVEKSTVPVRAAE
Sbjct: 115 ----------VNTPTKTFGNGKGRAADLKYVESAARMIAEIATGNKIVVEKSTVPVRAAE 164
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SIMN+L+ANHK V QILSNPEFL+EGTA+ DL NADR+LIGGE++PEG AAIE L V
Sbjct: 165 SIMNILRANHKPGVSCQILSNPEFLAEGTAIEDLVNADRVLIGGEDSPEGQAAIEELCKV 224
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHWIPRK+ILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVA+AVGLD
Sbjct: 225 YEHWIPRKNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVGLD 284
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQ---------------L 384
SRIG+KFL ASVGFGGSCFQKDILNLVYICECLNLPEVA+YWQQ +
Sbjct: 285 SRIGSKFLHASVGFGGSCFQKDILNLVYICECLNLPEVAAYWQQVIDMNEYQKSRFSAKV 344
Query: 385 YESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
ESLFNTV+DK I++LGFAFKKNTGDTRESPAIHV +TLL EGA L IYDPKVE SQII+
Sbjct: 345 IESLFNTVTDKRISMLGFAFKKNTGDTRESPAIHVAKTLLDEGAVLHIYDPKVEESQIIE 404
Query: 445 DLKEL----DPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPA 500
DL DPE + + +SI D Y K THAIV+CTEWDEFV LDYKRIY MMKPA
Sbjct: 405 DLTHPSVTNDPEYV-KSRISIYKDAYSATKGTHAIVLCTEWDEFVELDYKRIYINMMKPA 463
Query: 501 YIFDGRKILNHDALLDIGFNVHTV 524
YIFDGRKIL+HD L IGF V T+
Sbjct: 464 YIFDGRKILDHDKLQKIGFIVQTI 487
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194752105|ref|XP_001958363.1| GF10882 [Drosophila ananassae] gi|190625645|gb|EDV41169.1| GF10882 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/536 (62%), Positives = 381/536 (71%), Gaps = 100/536 (18%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+CCIGAGYVGG PTC+V+ALKCP+I +T+VDKS ER
Sbjct: 3 VCCIGAGYVGG-------------------------PTCAVMALKCPDIVITLVDKSSER 37
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I QWNS+KLPIYEPGLD+VVKK R+VNLFFSTDI++AI
Sbjct: 38 IAQWNSDKLPIYEPGLDDVVKKCRNVNLFFSTDIETAI---------------------- 75
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+ ADL ++ + KT +GRAADL
Sbjct: 76 KEADLIFIS---------------------------------VNTPTKTCGNGKGRAADL 102
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
KYVE+AARMIAEIA NKIVVEKSTVPVRAAESIM++L+AN K + + ILSNPEFL+EG
Sbjct: 103 KYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DL NADR+LIGGEETPEG+ A+E LSW+YEHWIP++HILTTNTWSSELSKLAANAF
Sbjct: 163 TAINDLLNADRVLIGGEETPEGHKAVEKLSWIYEHWIPKQHILTTNTWSSELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISSINSLSAVCEATGADVSEV +AVGLDSRIG+KFLQASVGFGGSCFQKDILNL+Y
Sbjct: 223 LAQRISSINSLSAVCEATGADVSEVGRAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIY 282
Query: 368 ICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTGDTR 412
ICE LNLPEVA+YWQQ + ESLFNTVSDK IAILGFAFKKNTGDTR
Sbjct: 283 ICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL----DPELLDHNAVSILDDPYDT 468
E+ AI VC+TLL EGAKL IYDPKVEP QII DL PE + AV I DPY
Sbjct: 343 ETAAITVCQTLLEEGAKLDIYDPKVEPEQIIDDLTHPTVTESPEYV-KEAVQIHSDPYSA 401
Query: 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
V+ THA+V+CTEWDEFV LD+KRIY+ MMKPAYIFDGRKIL+H+ L IGF+V T+
Sbjct: 402 VRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTI 457
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|220942614|gb|ACL83850.1| sgl-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/545 (61%), Positives = 386/545 (70%), Gaps = 102/545 (18%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+CCIGAGYVGG PTC+V+ALKCP+I +T+VDKS ER
Sbjct: 3 VCCIGAGYVGG-------------------------PTCAVMALKCPDIVITLVDKSSER 37
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I QWNS+KLPIYEPGLDEVVKK R+VNLFFSTDI++AI
Sbjct: 38 IAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAI---------------------- 75
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+ ADL ++ + KT +GRAADL
Sbjct: 76 KEADLIFIS---------------------------------VNTPTKTCGNGKGRAADL 102
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
KYVE+AARMIAEIA NKIVVEKSTVPVRAAESIM++L+AN K + + ILSNPEFL+EG
Sbjct: 103 KYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DL NADR+LIGGEETPEG+ A+E LSW+YEHWIP+++ILTTNTWSSELSKLAANAF
Sbjct: 163 TAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISSINSLSAVCEATGADVSEVA+AVGLDSRIG+KFLQASVGFGGSCFQKDILNL+Y
Sbjct: 223 LAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIY 282
Query: 368 ICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTGDTR 412
ICE LNLPEVA+YWQQ + ESLFNTVSDK IAILGFAFKKNTGDTR
Sbjct: 283 ICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL----DPELLDHNAVSILDDPYDT 468
E+ AI VC+TLL EGA L IYDPKVEP QII DL PE + AV I DPY
Sbjct: 343 ETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKV-KKAVQIHSDPYSA 401
Query: 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLN 528
V+ THA+V+CTEWDEFV LD+KRIY+ MMKPAYIFDGRKIL+H+ L IGF+V T+
Sbjct: 402 VRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTI--GK 459
Query: 529 EYQKT 533
+YQ+T
Sbjct: 460 KYQRT 464
|
Source: synthetic construct Species: synthetic construct Genus: N/A Family: N/A Order: N/A Class: N/A Phylum: N/A Superkingdom: |
| >gi|17136908|ref|NP_476980.1| sugarless [Drosophila melanogaster] gi|195338039|ref|XP_002035633.1| GM13805 [Drosophila sechellia] gi|195588326|ref|XP_002083909.1| GD13103 [Drosophila simulans] gi|6175085|sp|O02373.1|UGDH_DROME RecName: Full=UDP-glucose 6-dehydrogenase; Short=UDP-Glc dehydrogenase; Short=UDP-GlcDH; Short=UDPGDH; AltName: Full=Protein sugarless; AltName: Full=Protein suppenkasper gi|2149991|gb|AAB58714.1| UDP-glucose dehydrogenase [Drosophila melanogaster] gi|2257994|gb|AAB63208.1| UDP-glucose dehydrogenase [Drosophila melanogaster] gi|2266945|gb|AAB63462.1| UDP-glucose-6-dehydrogenase [Drosophila melanogaster] gi|7295310|gb|AAF50631.1| sugarless [Drosophila melanogaster] gi|15292585|gb|AAK93561.1| SD09476p [Drosophila melanogaster] gi|194128726|gb|EDW50769.1| GM13805 [Drosophila sechellia] gi|194195918|gb|EDX09494.1| GD13103 [Drosophila simulans] gi|220956244|gb|ACL90665.1| sgl-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/545 (61%), Positives = 386/545 (70%), Gaps = 102/545 (18%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+CCIGAGYVGG PTC+V+ALKCP+I +T+VDKS ER
Sbjct: 3 VCCIGAGYVGG-------------------------PTCAVMALKCPDIVITLVDKSSER 37
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I QWNS+KLPIYEPGLDEVVKK R+VNLFFSTDI++AI
Sbjct: 38 IAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAI---------------------- 75
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+ ADL ++ + KT +GRAADL
Sbjct: 76 KEADLIFIS---------------------------------VNTPTKTCGNGKGRAADL 102
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
KYVE+AARMIAEIA NKIVVEKSTVPVRAAESIM++L+AN K + + ILSNPEFL+EG
Sbjct: 103 KYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DL NADR+LIGGEETPEG+ A+E LSW+YEHWIP+++ILTTNTWSSELSKLAANAF
Sbjct: 163 TAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISSINSLSAVCEATGADVSEVA+AVGLDSRIG+KFLQASVGFGGSCFQKDILNL+Y
Sbjct: 223 LAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIY 282
Query: 368 ICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTGDTR 412
ICE LNLPEVA+YWQQ + ESLFNTVSDK IAILGFAFKKNTGDTR
Sbjct: 283 ICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL----DPELLDHNAVSILDDPYDT 468
E+ AI VC+TLL EGA L IYDPKVEP QII DL PE + AV I DPY
Sbjct: 343 ETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKV-KKAVQIHSDPYSA 401
Query: 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLN 528
V+ THA+V+CTEWDEFV LD+KRIY+ MMKPAYIFDGRKIL+H+ L IGF+V T+
Sbjct: 402 VRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTI--GK 459
Query: 529 EYQKT 533
+YQ+T
Sbjct: 460 KYQRT 464
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195492396|ref|XP_002093972.1| GE20458 [Drosophila yakuba] gi|194180073|gb|EDW93684.1| GE20458 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/545 (61%), Positives = 386/545 (70%), Gaps = 102/545 (18%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+CCIGAGYVGG PTC+V+ALKCP+I +T+VDKS ER
Sbjct: 3 VCCIGAGYVGG-------------------------PTCAVMALKCPDIVITLVDKSVER 37
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I QWNS+KLPIYEPGLDEVVKK R+VNLFFSTDI++AI
Sbjct: 38 IAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAI---------------------- 75
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+ ADL ++ + KT +GRAADL
Sbjct: 76 KEADLIFIS---------------------------------VNTPTKTCGNGKGRAADL 102
Query: 188 KYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEG 247
KYVE+AARMIAEIA NKIVVEKSTVPVRAAESIM++L+AN K + + ILSNPEFL+EG
Sbjct: 103 KYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEG 162
Query: 248 TAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307
TA+ DL NADR+LIGGEETPEG+ A+E LSW+YEHWIP+++ILTTNTWSSELSKLAANAF
Sbjct: 163 TAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAF 222
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LAQRISSINSLSAVCEATGADVSEVA+AVGLDSRIG+KFLQASVGFGGSCFQKDILNL+Y
Sbjct: 223 LAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIY 282
Query: 368 ICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTGDTR 412
ICE LNLPEVA+YWQQ + ESLFNTVSDK IAILGFAFKKNTGDTR
Sbjct: 283 ICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTR 342
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL----DPELLDHNAVSILDDPYDT 468
E+ AI VC+TLL EGA L IYDPKVEP QII DL PE + AV I DPY
Sbjct: 343 ETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKV-KKAVQIHSDPYSA 401
Query: 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLN 528
V+ THA+V+CTEWDEFV LD+KRIY+ MMKPAYIFDGRKIL+H+ L IGF+V T+
Sbjct: 402 VRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTI--GK 459
Query: 529 EYQKT 533
+YQ+T
Sbjct: 460 KYQRT 464
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 598 | ||||||
| FB|FBgn0261445 | 476 | sgl "sugarless" [Drosophila me | 0.479 | 0.602 | 0.751 | 2.1e-126 | |
| WB|WBGene00005022 | 481 | sqv-4 [Caenorhabditis elegans | 0.617 | 0.767 | 0.579 | 3.1e-123 | |
| UNIPROTKB|Q19905 | 481 | sqv-4 "UDP-glucose 6-dehydroge | 0.617 | 0.767 | 0.579 | 3.1e-123 | |
| UNIPROTKB|Q5F3T9 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.503 | 0.609 | 0.628 | 5.5e-111 | |
| UNIPROTKB|G1K343 | 421 | UGDH "UDP-glucose 6-dehydrogen | 0.503 | 0.714 | 0.628 | 5.5e-111 | |
| UNIPROTKB|O60701 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.503 | 0.609 | 0.625 | 4.9e-110 | |
| MGI|MGI:1306785 | 493 | Ugdh "UDP-glucose dehydrogenas | 0.479 | 0.582 | 0.645 | 1e-109 | |
| UNIPROTKB|I3LIM2 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.479 | 0.580 | 0.639 | 1e-109 | |
| UNIPROTKB|E2R311 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.503 | 0.609 | 0.625 | 1.3e-109 | |
| RGD|621879 | 493 | Ugdh "UDP-glucose 6-dehydrogen | 0.479 | 0.582 | 0.639 | 2.7e-109 |
| FB|FBgn0261445 sgl "sugarless" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 227/302 (75%), Positives = 254/302 (84%)
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
++ A+ I + KT +GRAADLKYVE+AARMIAEIA NKIVVEKSTVPVRAAE
Sbjct: 75 IKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAE 134
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SIM++L+AN K + + ILSNPEFL+EGTA+ DL NADR+LIGGEETPEG+ A+E LSW+
Sbjct: 135 SIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWI 194
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHWIP+++ILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVA+AVGLD
Sbjct: 195 YEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVGLD 254
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL-----Y--------- 385
SRIG+KFLQASVGFGGSCFQKDILNL+YICE LNLPEVA+YWQQ+ Y
Sbjct: 255 SRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVIDMNEYQKRRFSQKI 314
Query: 386 -ESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
ESLFNTVSDK IAILGFAFKKNTGDTRE+ AI VC+TLL EGA L IYDPKVEP QII
Sbjct: 315 IESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAALDIYDPKVEPEQIID 374
Query: 445 DL 446
DL
Sbjct: 375 DL 376
|
|
| WB|WBGene00005022 sqv-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1097 (391.2 bits), Expect = 3.1e-123, Sum P(2) = 3.1e-123
Identities = 225/388 (57%), Positives = 278/388 (71%)
Query: 156 STVPVRAAESIMNVLKANHKTNVQFQGR--AADLKYVEAAARMIAEIATDNKIVVEKSTV 213
S +P AE+ + + N T + +G+ A DLKYVE+ +R IA+ A KIVVEKSTV
Sbjct: 78 SDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTV 137
Query: 214 PVRAAESIMNVLKANHKTN--VQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYA 271
PV+AAESI +L+ K N ++FQ+LSNPEFL+EGTAM DL N DR+LIGGE +PEG
Sbjct: 138 PVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQ 197
Query: 272 AIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSE 331
A+ L +YE+W+PR I+TTNTWSSELSKL ANAFLAQRISSINS+SAVCEATGA++SE
Sbjct: 198 AVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEISE 257
Query: 332 VAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQ--------- 382
VA AVG D+RIG+KFLQASVGFGGSCFQKD+L+LVY+CE LNLP+VA YWQ
Sbjct: 258 VAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQ 317
Query: 383 ------QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK 436
++ LFNTV+DK IAI GFAFKKNTGDTRES AIHV + L+ E AKL +YDPK
Sbjct: 318 RRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPK 377
Query: 437 VEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM 496
V+ SQ++ DL + +++ DPY + HAIVV TEWDEFV L+Y +I+ M
Sbjct: 378 VQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDM 437
Query: 497 MKPAYIFDGRKILNHDALLDIGFNVHTV 524
PA IFDGR IL+ AL +IGF +
Sbjct: 438 QHPAAIFDGRLILDQKALREIGFRTFAI 465
|
|
| UNIPROTKB|Q19905 sqv-4 "UDP-glucose 6-dehydrogenase" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1097 (391.2 bits), Expect = 3.1e-123, Sum P(2) = 3.1e-123
Identities = 225/388 (57%), Positives = 278/388 (71%)
Query: 156 STVPVRAAESIMNVLKANHKTNVQFQGR--AADLKYVEAAARMIAEIATDNKIVVEKSTV 213
S +P AE+ + + N T + +G+ A DLKYVE+ +R IA+ A KIVVEKSTV
Sbjct: 78 SDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTV 137
Query: 214 PVRAAESIMNVLKANHKTN--VQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYA 271
PV+AAESI +L+ K N ++FQ+LSNPEFL+EGTAM DL N DR+LIGGE +PEG
Sbjct: 138 PVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQ 197
Query: 272 AIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSE 331
A+ L +YE+W+PR I+TTNTWSSELSKL ANAFLAQRISSINS+SAVCEATGA++SE
Sbjct: 198 AVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEISE 257
Query: 332 VAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQ--------- 382
VA AVG D+RIG+KFLQASVGFGGSCFQKD+L+LVY+CE LNLP+VA YWQ
Sbjct: 258 VAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQ 317
Query: 383 ------QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK 436
++ LFNTV+DK IAI GFAFKKNTGDTRES AIHV + L+ E AKL +YDPK
Sbjct: 318 RRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPK 377
Query: 437 VEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM 496
V+ SQ++ DL + +++ DPY + HAIVV TEWDEFV L+Y +I+ M
Sbjct: 378 VQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDM 437
Query: 497 MKPAYIFDGRKILNHDALLDIGFNVHTV 524
PA IFDGR IL+ AL +IGF +
Sbjct: 438 QHPAAIFDGRLILDQKALREIGFRTFAI 465
|
|
| UNIPROTKB|Q5F3T9 UGDH "UDP-glucose 6-dehydrogenase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 200/318 (62%), Positives = 240/318 (75%)
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
+R A+ + + KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAE
Sbjct: 79 IREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAE 138
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SI + AN K N+ Q+LSNPEFL+EGTA+ DL N DR+LIGG+++PEG A+ +L V
Sbjct: 139 SIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAV 198
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHW+P++ ILTTNTWSSELSKLAANAFLAQRISSINS+SA+CEATGADV EVA+A+G D
Sbjct: 199 YEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVARAIGTD 258
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL-----YE-------- 386
RIG KFL+ASVGFGGSCFQKD+LNLVY+CE LNLPEVA YWQQ+ Y+
Sbjct: 259 QRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRI 318
Query: 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ EGAKL IYDPKV QII
Sbjct: 319 IDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLHIYDPKVPKEQIIL 378
Query: 445 DLKELDPELLDHNAVSIL 462
DL P + + N VS L
Sbjct: 379 DLSH--PGVSEDNQVSRL 394
|
|
| UNIPROTKB|G1K343 UGDH "UDP-glucose 6-dehydrogenase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 200/318 (62%), Positives = 240/318 (75%)
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
+R A+ + + KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAE
Sbjct: 79 IREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAE 138
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SI + AN K N+ Q+LSNPEFL+EGTA+ DL N DR+LIGG+++PEG A+ +L V
Sbjct: 139 SIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAV 198
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHW+P++ ILTTNTWSSELSKLAANAFLAQRISSINS+SA+CEATGADV EVA+A+G D
Sbjct: 199 YEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVARAIGTD 258
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL-----YE-------- 386
RIG KFL+ASVGFGGSCFQKD+LNLVY+CE LNLPEVA YWQQ+ Y+
Sbjct: 259 QRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRI 318
Query: 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ EGAKL IYDPKV QII
Sbjct: 319 IDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLHIYDPKVPKEQIIL 378
Query: 445 DLKELDPELLDHNAVSIL 462
DL P + + N VS L
Sbjct: 379 DLSH--PGVSEDNQVSRL 394
|
|
| UNIPROTKB|O60701 UGDH "UDP-glucose 6-dehydrogenase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 962 (343.7 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 199/318 (62%), Positives = 240/318 (75%)
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
++ A+ + + KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAE
Sbjct: 79 IKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAE 138
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SI + AN K N+ Q+LSNPEFL+EGTA+ DL N DR+LIGG+ETPEG A+++L V
Sbjct: 139 SIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAV 198
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHW+PR+ ILTTNTWSSELSKLAANAFLAQRISSINS+SA+CEATGADV EVA A+G+D
Sbjct: 199 YEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMD 258
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL-----YE-------- 386
RIG KFL+ASVGFGGSCFQKD+LNLVY+CE LNLPEVA YWQQ+ Y+
Sbjct: 259 QRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRI 318
Query: 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ EGA L IYDPKV QI+
Sbjct: 319 IDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVV 378
Query: 445 DLKELDPELLDHNAVSIL 462
DL P + + + VS L
Sbjct: 379 DLSH--PGVSEDDQVSRL 394
|
|
| MGI|MGI:1306785 Ugdh "UDP-glucose dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 957 (341.9 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 195/302 (64%), Positives = 232/302 (76%)
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
+R A+ + + KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAE
Sbjct: 79 IREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAE 138
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SI + AN K N+ Q+LSNPEFL+EGTA+ DL N DR+LIGG+ETPEG A+ +L V
Sbjct: 139 SIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAV 198
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHW+P++ ILTTNTWSSELSKLAANAFLAQRISSINS+SA+CEATGADV EVA A+G+D
Sbjct: 199 YEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMD 258
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL-----YE-------- 386
RIG KFL+ASVGFGGSCFQKD+LNLVY+CE LNLPEVA YWQQ+ Y+
Sbjct: 259 QRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRI 318
Query: 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ EGA L IYDPKV QI+
Sbjct: 319 IDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVV 378
Query: 445 DL 446
DL
Sbjct: 379 DL 380
|
|
| UNIPROTKB|I3LIM2 UGDH "UDP-glucose 6-dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 193/302 (63%), Positives = 232/302 (76%)
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
++ A+ + + KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAE
Sbjct: 79 IKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAE 138
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SI + AN K N+ Q+LSNPEFL+EGTA+ DL DR+LIGG+ETPEG A+++L V
Sbjct: 139 SIRRIFDANTKPNLNLQVLSNPEFLAEGTAIQDLKYPDRVLIGGDETPEGQRAVQALCAV 198
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHW+P++ ILTTNTWSSELSKLAANAFLAQRISSINS+SA+CEATGADV EVA A+G+D
Sbjct: 199 YEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMD 258
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL-----YE-------- 386
RIG KFL+ASVGFGGSCFQKD+LNLVY+CE LNLPEVA YWQQ+ Y+
Sbjct: 259 QRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRI 318
Query: 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ EGA L IYDPKV QI+
Sbjct: 319 IDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVV 378
Query: 445 DL 446
DL
Sbjct: 379 DL 380
|
|
| UNIPROTKB|E2R311 UGDH "UDP-glucose 6-dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 958 (342.3 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 199/318 (62%), Positives = 239/318 (75%)
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
++ A+ + + KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAE
Sbjct: 79 IKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAE 138
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SI + AN K N+ Q+LSNPEFL+EGTA+ DL N DR+LIGG+ETPEG A+++L V
Sbjct: 139 SIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAV 198
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHW+PR+ ILTTNTWSSELSKLAANAFLAQRISSINS+SA+CEATGADV EVA A+G+D
Sbjct: 199 YEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMD 258
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL-----YE-------- 386
RIG KFL+ASVGFGGSCFQKD+LNLVY+CE LNLPEVA YWQQ+ Y+
Sbjct: 259 QRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRI 318
Query: 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ EGA L IYDPKV QI+
Sbjct: 319 IDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVV 378
Query: 445 DLKELDPELLDHNAVSIL 462
DL P + + VS L
Sbjct: 379 DLSH--PGVSQDDQVSRL 394
|
|
| RGD|621879 Ugdh "UDP-glucose 6-dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
Identities = 193/302 (63%), Positives = 232/302 (76%)
Query: 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219
+R A+ + + KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAE
Sbjct: 79 IREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAE 138
Query: 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWV 279
SI + AN K N+ Q+LSNPEFL+EGTA+ DL N DR+LIGG+ETPEG A+++L V
Sbjct: 139 SIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAV 198
Query: 280 YEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339
YEHW+P++ ILTTNTWSSELSKLAANAFLAQRISSINS+SA+CE+TGADV EVA A+G+D
Sbjct: 199 YEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTGADVEEVATAIGMD 258
Query: 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL-----YE-------- 386
RIG KFL+ASVGFGG CFQKD+LNLVY+CE LNLPEVA YWQQ+ Y+
Sbjct: 259 QRIGNKFLKASVGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRI 318
Query: 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ EGA L IYDPKV QI+
Sbjct: 319 IDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVV 378
Query: 445 DL 446
DL
Sbjct: 379 DL 380
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O32271 | TUAD_BACSU | 1, ., 1, ., 1, ., 2, 2 | 0.3183 | 0.6822 | 0.8850 | yes | N/A |
| O60701 | UGDH_HUMAN | 1, ., 1, ., 1, ., 2, 2 | 0.5304 | 0.7324 | 0.8866 | yes | N/A |
| Q5F3T9 | UGDH_CHICK | 1, ., 1, ., 1, ., 2, 2 | 0.5341 | 0.7324 | 0.8866 | yes | N/A |
| Q92GB1 | UDG_RICCN | 1, ., 1, ., 1, ., 2, 2 | 0.3058 | 0.6889 | 0.9537 | yes | N/A |
| Q1RKF8 | UDG_RICBR | 1, ., 1, ., 1, ., 2, 2 | 0.3046 | 0.6889 | 0.9493 | yes | N/A |
| Q68VX0 | UDG_RICTY | 1, ., 1, ., 1, ., 2, 2 | 0.3064 | 0.6939 | 0.9562 | yes | N/A |
| Q4UK39 | UDG_RICFE | 1, ., 1, ., 1, ., 2, 2 | 0.3025 | 0.6939 | 0.9263 | yes | N/A |
| P12378 | UGDH_BOVIN | 1, ., 1, ., 1, ., 2, 2 | 0.5306 | 0.7357 | 0.8906 | yes | N/A |
| Q5R7B3 | UGDH_PONAB | 1, ., 1, ., 1, ., 2, 2 | 0.5286 | 0.7324 | 0.8866 | yes | N/A |
| Q19905 | UGDH_CAEEL | 1, ., 1, ., 1, ., 2, 2 | 0.5295 | 0.7357 | 0.9147 | yes | N/A |
| Q9FM01 | UGDH2_ARATH | 1, ., 1, ., 1, ., 2, 2 | 0.5046 | 0.7290 | 0.9083 | yes | N/A |
| O54068 | UDG_RHIME | 1, ., 1, ., 1, ., 2, 2 | 0.3129 | 0.7006 | 0.9588 | yes | N/A |
| O02373 | UGDH_DROME | 1, ., 1, ., 1, ., 2, 2 | 0.6183 | 0.7408 | 0.9306 | yes | N/A |
| O70475 | UGDH_MOUSE | 1, ., 1, ., 1, ., 2, 2 | 0.5306 | 0.7357 | 0.8924 | yes | N/A |
| O70199 | UGDH_RAT | 1, ., 1, ., 1, ., 2, 2 | 0.5269 | 0.7357 | 0.8924 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 598 | |||
| PLN02353 | 473 | PLN02353, PLN02353, probable UDP-glucose 6-dehydro | 0.0 | |
| COG1004 | 414 | COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenas | 1e-104 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 1e-93 | |
| PLN02353 | 473 | PLN02353, PLN02353, probable UDP-glucose 6-dehydro | 8e-73 | |
| pfam03721 | 188 | pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose | 9e-55 | |
| COG0677 | 436 | COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de | 3e-38 | |
| pfam00984 | 96 | pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose d | 7e-37 | |
| pfam03720 | 103 | pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose | 1e-35 | |
| PLN02353 | 473 | PLN02353, PLN02353, probable UDP-glucose 6-dehydro | 6e-31 | |
| smart00984 | 99 | smart00984, UDPG_MGDP_dh_C, UDP binding domain | 6e-31 | |
| PRK11064 | 415 | PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydro | 8e-18 | |
| PRK15057 | 388 | PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; P | 2e-16 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 7e-15 | |
| pfam03720 | 103 | pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose | 1e-14 | |
| smart00984 | 99 | smart00984, UDPG_MGDP_dh_C, UDP binding domain | 7e-14 | |
| COG1004 | 414 | COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenas | 2e-13 | |
| COG0677 | 436 | COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de | 3e-08 | |
| PRK15182 | 425 | PRK15182, PRK15182, Vi polysaccharide biosynthesis | 1e-06 |
| >gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Score = 556 bits (1434), Expect = 0.0
Identities = 221/370 (59%), Positives = 276/370 (74%), Gaps = 29/370 (7%)
Query: 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241
G+AADL Y E+AARMIA+++ +KIVVEKSTVPV+ AE+I +L N K + FQILSNP
Sbjct: 98 GKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-INFQILSNP 156
Query: 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSK 301
EFL+EGTA+ DLF DR+LIGG ETPEG A+++L VY HW+P + I+TTN WS+ELSK
Sbjct: 157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSK 216
Query: 302 LAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKD 361
LAANAFLAQRISS+N++SA+CEATGADVS+V+ AVG DSRIG KFL ASVGFGGSCFQKD
Sbjct: 217 LAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKD 276
Query: 362 ILNLVYICECLNLPEVASYWQQL-----YE----------SLFNTVSDKHIAILGFAFKK 406
ILNLVYICEC LPEVA YW+Q+ Y+ S+FNTVS K IA+LGFAFKK
Sbjct: 277 ILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKK 336
Query: 407 NTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDH---------- 456
+TGDTRE+PAI VC+ LL + AKL IYDP+V QI +DL ++ DH
Sbjct: 337 DTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDL-SMNKFDWDHPRHLQPMSPT 395
Query: 457 --NAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDAL 514
VS++ D Y+ K H I + TEWDEF TLDY++IY+ M KPA++FDGR +L+H+ L
Sbjct: 396 AVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKL 455
Query: 515 LDIGFNVHTV 524
+IGF V+++
Sbjct: 456 REIGFIVYSI 465
|
Length = 473 |
| >gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 321 bits (824), Expect = e-104
Identities = 166/500 (33%), Positives = 232/500 (46%), Gaps = 108/500 (21%)
Query: 33 VTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTR- 91
+TV+ YVG + L +V VD E ++ N PIYEPGL+E++K+
Sbjct: 3 ITVIGTGYVG--LVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA 60
Query: 92 DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKI 151
L F+TD + A++ A ++FI+V TP G +ADL YVEA A+ I EI +
Sbjct: 61 SGRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAV 115
Query: 152 VVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKS 211
VV KSTVPV E + A+I +N
Sbjct: 116 VVIKSTVPVGTTE------------------------------EVRAKIREENS------ 139
Query: 212 TVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYA 271
F++ SNPEFL EG+A+ D DRI+IG
Sbjct: 140 --------------------GKDFEVASNPEFLREGSAVYDFLYPDRIVIGVRS----ER 175
Query: 272 AIESLSWVYEHWIPRKH--ILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADV 329
A L +Y ++ R+ IL T+ +EL K AANAFLA +IS IN ++ +CE GADV
Sbjct: 176 AAAVLRELYAPFL-RQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADV 234
Query: 330 SEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESL- 388
+VA+ +GLD RIG FL A G+GGSCF KD L+ E L Y L E++
Sbjct: 235 KQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAE--ELG----YDPNLLEAVV 288
Query: 389 ----------------FNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKI 432
+ K IA+LG AFK NT D RESPA+ + + L +GA++
Sbjct: 289 EVNERRKDKLAEKILNHLGLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIA 348
Query: 433 YDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRI 492
YDP + + V + D + +K AIV+ TEWDEF LD++++
Sbjct: 349 YDPVAM-----------ENAFRNFPDVELESDAEEALKGADAIVINTEWDEFRDLDFEKL 397
Query: 493 YEGMMKPAYIFDGRKILNHD 512
+MK + DGR I + D
Sbjct: 398 ---LMKTPVVIDGRNIFDPD 414
|
Length = 414 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 293 bits (752), Expect = 1e-93
Identities = 156/514 (30%), Positives = 221/514 (42%), Gaps = 119/514 (23%)
Query: 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65
I IG GYVG P +++A VT VD +
Sbjct: 1 MKIAVIGLGYVGLPLAALLADL---------------------------GHDVTGVDIDQ 33
Query: 66 ERIRQWNSNKLPIYEPGLDEVVKKTRDVNLF-FSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E++ + N K PIYEPGLDE++ K +TD + AI+ A +I I V TP K
Sbjct: 34 EKVDKLNKGKSPIYEPGLDELLAKALKAGRLRATTDYEEAIRDADVIIICVPTPLK---- 89
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
+ + DL YVE+AA IA+ VV +STVP E
Sbjct: 90 -EDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTE-------------------- 128
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
++ I + ++ K F + NPEFL
Sbjct: 129 ----------EVVKPI-----------------------LERSGLKLGEDFYLAYNPEFL 155
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
EG A+ DL + DRI+ G ET E A E+++ +Y I +L T+ ++E+ KLA
Sbjct: 156 REGNAVHDLLHPDRIVGG--ETEE---AGEAVAELYSP-IIDGPVLVTSIETAEMIKLAE 209
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
N F A +I+ N L+ +CEA G DV EV +A G D RIG FL G GG C KD L
Sbjct: 210 NTFRAVKIAFANELARICEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLA 269
Query: 365 LVYICECL--NLPEVAS----------YWQQLYESLFNTVSDKHIAILGFAFKKNTGDTR 412
L+ + L N + + Y + + L + K + ILG AFK NT D R
Sbjct: 270 LIAKAKELGYNPELIEAAREINDSQPDYVVEKIKDLLGALKGKTVLILGLAFKPNTDDVR 329
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472
ESPA+ + L +GAK+K YDP V + + +DD + +K
Sbjct: 330 ESPALDIIELLKEKGAKVKAYDPLVPE--------------EEVKGLPSIDDLEEALKGA 375
Query: 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506
A+V+ T+ EF LD ++I +MK + D R
Sbjct: 376 DALVILTDHSEFKDLDLEKIK-DLMKGKVVVDTR 408
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 8e-73
Identities = 96/174 (55%), Positives = 119/174 (68%), Gaps = 26/174 (14%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
ICCIGAGYVGGPT +VIALKCP+I+V VVD S R
Sbjct: 4 ICCIGAGYVGGPTMAVIALKCPDIEVVVVDI-------------------------SVPR 38
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I WNS++LPIYEPGLDEVVK+ R NLFFSTD++ + +A ++F+SVNTPTKT G G G
Sbjct: 39 IDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAG 98
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 181
+AADL Y E+AARMIA+++ +KIVVEKSTVPV+ AE+I +L N K + FQ
Sbjct: 99 KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-INFQ 151
|
Length = 473 |
| >gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 9e-55
Identities = 81/268 (30%), Positives = 109/268 (40%), Gaps = 84/268 (31%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I IG GYVG PT +A V VD ++ +
Sbjct: 3 IAVIGLGYVGLPTAVCLAEIG---------------------------HDVVGVDINQSK 35
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGK 126
I + N+ K+PIYEPGL+E++K L F+TD+ AI++A +IFI+V TP+K
Sbjct: 36 IDKLNNGKIPIYEPGLEELLKANVETGRLRFTTDVAEAIKEADVIFIAVPTPSKK----D 91
Query: 127 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAAD 186
G A DL YVE+AAR I + K+VV KSTVP E
Sbjct: 92 GGAPDLTYVESAARTIGPVLKKGKVVVVKSTVPPGTTE---------------------- 129
Query: 187 LKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSE 246
E ++ + + K V F + SNPEFL E
Sbjct: 130 ----EVVKPILEKRSGK--------------------------KFGVDFNVASNPEFLRE 159
Query: 247 GTAMTDLFNADRILIGGEETPEGYAAIE 274
G A+ DL N DR++IG E E
Sbjct: 160 GNALHDLLNPDRVVIGVTEECAEERLAE 187
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 188 |
| >gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-38
Identities = 116/494 (23%), Positives = 194/494 (39%), Gaps = 97/494 (19%)
Query: 33 VTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRD 92
+ V+ YVG P + A +V VD +++++ + N + I EP LDEVVK+ +
Sbjct: 12 IGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE 69
Query: 93 VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152
+T +++ + I V TP K K R DL YVE+AAR IA + +V
Sbjct: 70 SGKLRATTDPEELKECDVFIICVPTPLK-----KYREPDLSYVESAARSIAPVLKKGDLV 124
Query: 153 VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKST 212
+ +ST P E + + + E +
Sbjct: 125 ILESTTPPGTTEEV---------------------------VKPLLEERSG--------- 148
Query: 213 VPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAA 272
LK + + +PE + G + +L N ++ IGG TP+
Sbjct: 149 ------------LKFGEDFYLAY----SPERVLPGNVLKELVNNPKV-IGGV-TPK---C 187
Query: 273 IESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEV 332
E + +Y+ + +T+ ++E+ KL N F I+ N L+ +C A G DV EV
Sbjct: 188 AELAAALYKTIVEGVIPVTSAR-TAEMVKLTENTFRDVNIALANELALICNAMGIDVWEV 246
Query: 333 AKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLP----------------E 376
+A R+ G GG C D L + LP
Sbjct: 247 IEAANTKPRV--NIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRTAREINDSMPRH 304
Query: 377 VASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK 436
V ++ +S I +LG A+K + D RESPA+ + L G ++ +YDP
Sbjct: 305 VVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPY 364
Query: 437 VEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM 496
V+ +D + + +L+ +K+ A+V+ T+ EF +DY+ I +
Sbjct: 365 VKELPTREDGEGVTLAILEE-----------ALKDADAVVIATDHSEFKEIDYEAIGK-- 411
Query: 497 MKPAYIFDGRKILN 510
+ I D R +
Sbjct: 412 -EAKVIVDTRNVWK 424
|
Length = 436 |
| >gnl|CDD|201536 pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose dehydrogenase family, central domain | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 7e-37
Identities = 50/84 (59%), Positives = 57/84 (67%)
Query: 294 TWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGF 353
++E+ K AANAFLA +IS IN L+ +CEA GADVSEVA+A GLD RIG KFL GF
Sbjct: 1 LKTAEMIKYAANAFLATKISFINELANICEAVGADVSEVARAAGLDPRIGRKFLNPGPGF 60
Query: 354 GGSCFQKDILNLVYICECLNLPEV 377
GGSCF KD L Y E L LP
Sbjct: 61 GGSCFPKDPYALTYKAEELGLPAR 84
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 96 |
| >gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 1e-35
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 10/113 (8%)
Query: 398 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHN 457
A+LG AFK NT D RESPA+ + LL EGA++ +YDP V I E L +
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEEGAEVVVYDPYVPEEAI---------EALGED 51
Query: 458 AVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN 510
V+++DD + +K AIV+ T+ DEF +LD+ +I + +MKP +FDGR +L+
Sbjct: 52 GVTLVDDLEEALKGADAIVILTDHDEFRSLDWAKIKK-LMKPPVVFDGRNVLD 103
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 103 |
| >gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 6e-31
Identities = 45/70 (64%), Positives = 58/70 (82%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VI +N+YQK+RF +++SS+FNTVS K IA+LGFAFKK+TGDTRE+PAI VC+ LL +
Sbjct: 297 KQVIKMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD 356
Query: 582 GAKLKIYDPK 591
AKL IYDP+
Sbjct: 357 KAKLSIYDPQ 366
|
Length = 473 |
| >gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 6e-31
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 14/113 (12%)
Query: 398 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHN 457
A+LG AFK NT D RESPA+ + LL GA++ +YDP E
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAM-------------EEAREY 47
Query: 458 AVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN 510
++ + D + +K A+V+ TE DEF +LD + + + +MK + DGR IL+
Sbjct: 48 GLTYVSDLEEALKGADAVVIATEHDEFRSLDPEELKD-LMKKPVVVDGRNILD 99
|
The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 99 |
| >gnl|CDD|182940 PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 8e-18
Identities = 110/413 (26%), Positives = 162/413 (39%), Gaps = 91/413 (22%)
Query: 33 VTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRD 92
++V+ Y+G PT + A + QV VD ++ + N ++ I EP LD VVK +
Sbjct: 6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE 63
Query: 93 VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152
+T + + A I+V TP K DL YVEAAA+ IA + +V
Sbjct: 64 GGYLRAT---TTPEPADAFLIAVPTPFK-----GDHEPDLTYVEAAAKSIAPVLKKGDLV 115
Query: 153 VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKST 212
+ +ST PV A E + L A AR T
Sbjct: 116 ILESTSPVGATEQMAEWL---------------------AEAR-------------PDLT 141
Query: 213 VPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAA 272
P +A E I PE + G M +L DR+ IGG TP A
Sbjct: 142 FPQQAGE------------QADINIAYCPERVLPGQVMVELIKNDRV-IGG-MTPVCSAR 187
Query: 273 IESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEV 332
L Y+ ++ + ++ TN+ ++E+ KL N+F I+ N LS +C G +V E+
Sbjct: 188 ASEL---YKIFLEGECVV-TNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWEL 243
Query: 333 AKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVAS------------- 379
+ R+ LQ G GG C D +V P+ A
Sbjct: 244 IRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQN-----PQQARLIRTAREVNDGKP 296
Query: 380 YW------QQLYESLFNT---VSDKHIAILGFAFKKNTGDTRESPAIHVCRTL 423
+W + + L T S+ IA G AFK N D RESPA+ + +
Sbjct: 297 HWVIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI 349
|
Length = 415 |
| >gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-16
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 190 VEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTA 249
VE+ + + EI +V+ KSTVPV A HK I+ +PEFL EG A
Sbjct: 97 VESVIKDVVEINPYAVMVI-KSTVPV-------GFTAAMHKKYRTENIIFSPEFLREGKA 148
Query: 250 MTDLFNADRILIGGE-ETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFL 308
+ D + RI+IG E E +AA+ + ++ IP L T++ +E KL AN +L
Sbjct: 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQN-IP---TLFTDSTEAEAIKLFANTYL 204
Query: 309 AQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLV 366
A R++ N L + E+ G + ++ + V LD RIG + S G+GG C KD L+
Sbjct: 205 AMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 262
|
Length = 388 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 7e-15
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ ++N+ Q EKI L + K + ILG AFK NT D RESPA+ + L
Sbjct: 284 IEAAREINDSQPDYVVEKIKDLLGA-LKGKTVLILGLAFKPNTDDVRESPALDIIELLKE 342
Query: 581 EGAKLKIYDPKLMS 594
+GAK+K YDP +
Sbjct: 343 KGAKVKAYDPLVPE 356
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 1e-14
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 553 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594
A+LG AFK NT D RESPA+ + LL EGA++ +YDP +
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEEGAEVVVYDPYVPE 42
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 103 |
| >gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 7e-14
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 553 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLM 593
A+LG AFK NT D RESPA+ + LL GA++ +YDP M
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAM 41
|
The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 99 |
| >gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 523 TVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG 582
V+++NE +K + +EKI++ L + K IA+LG AFK NT D RESPA+ + + L +G
Sbjct: 286 AVVEVNERRKDKLAEKILNHL--GLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKG 343
Query: 583 AKLKIYDPKLM 593
A++ YDP M
Sbjct: 344 AEVIAYDPVAM 354
|
Length = 414 |
| >gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 547 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDP 590
+S I +LG A+K + D RESPA+ + L G ++ +YDP
Sbjct: 320 LSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDP 363
|
Length = 436 |
| >gnl|CDD|185104 PRK15182, PRK15182, Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 71/286 (24%), Positives = 117/286 (40%), Gaps = 41/286 (14%)
Query: 183 RAADLKYVEAAARMIAEIATDNKIVVEKSTV-PVRAAESIMNVLK--ANHKTNVQFQILS 239
+ DL + A+ + + IVV +STV P E + +L + N F +
Sbjct: 92 KQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGY 151
Query: 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSEL 299
+PE ++ G L N +I G E + VY+ I++ T+ +E
Sbjct: 152 SPERINPGDKKHRLTNIKKITSGSTAQ-----IAELIDEVYQQ------IISAGTYKAES 200
Query: 300 SKLAANAFL---AQR---ISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGF 353
K+A A + QR I+ +N L+ + D V +A G FL G
Sbjct: 201 IKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WNFLPFRPGL 256
Query: 354 -GGSCFQKDILNLVYICECLNL-PEVASYWQQLYESLFNTVSDKHIA------------- 398
GG C D L + + + PE+ ++L +++ N VS++ I
Sbjct: 257 VGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSS 316
Query: 399 --ILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQI 442
ILGF FK+N D R + I V + L K+ I+DP V+ ++
Sbjct: 317 VLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEV 362
|
Length = 425 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 598 | |||
| KOG2666|consensus | 481 | 100.0 | ||
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 100.0 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 100.0 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 100.0 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 100.0 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 100.0 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 100.0 | |
| KOG2666|consensus | 481 | 99.97 | ||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.97 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.97 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.96 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.96 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.95 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.95 | |
| KOG0409|consensus | 327 | 99.95 | ||
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.95 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.95 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.94 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.94 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.94 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.93 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.92 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.92 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.91 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 99.91 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.91 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.89 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.85 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.84 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.81 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 99.81 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.79 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.79 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.75 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.69 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.67 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.64 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.57 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.55 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.55 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.55 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.51 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.49 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.46 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.46 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.43 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.42 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.39 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.37 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.36 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.36 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.33 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.32 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.31 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.31 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.3 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.29 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.28 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.28 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.28 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.27 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 99.27 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.26 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.26 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.24 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.22 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.22 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.21 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.16 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.15 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.11 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.05 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.02 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.97 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.97 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.97 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 98.96 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.94 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.94 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 98.9 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.9 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.86 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.84 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.84 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.83 | |
| KOG2653|consensus | 487 | 98.83 | ||
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.83 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.81 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.8 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 98.76 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.76 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.71 | |
| PLN02256 | 304 | arogenate dehydrogenase | 98.71 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.7 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 98.69 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.67 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 98.66 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.66 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.64 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 98.62 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.57 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.5 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 98.48 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.47 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.47 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.45 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.41 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 98.38 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.33 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.27 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 98.27 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.27 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.23 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.2 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.2 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.2 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.2 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.15 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.14 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.13 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.13 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.13 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.1 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 98.08 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.08 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.07 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.06 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.02 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.0 | |
| KOG2304|consensus | 298 | 98.0 | ||
| PLN02602 | 350 | lactate dehydrogenase | 98.0 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.99 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.97 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 97.96 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.96 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.95 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 97.93 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.93 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.88 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.88 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.87 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.78 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.77 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.77 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.76 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.75 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.75 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.73 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.72 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.71 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.71 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.63 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.55 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.55 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.55 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.53 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.52 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.52 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 97.51 | |
| KOG2711|consensus | 372 | 97.5 | ||
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.49 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.46 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.46 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.45 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.42 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.42 | |
| PLN00106 | 323 | malate dehydrogenase | 97.41 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.38 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.37 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.35 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.31 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.3 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.28 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.26 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.26 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.26 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.24 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.19 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.19 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.16 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.16 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.14 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.12 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.1 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.1 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.08 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.06 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.05 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.05 | |
| KOG2305|consensus | 313 | 97.03 | ||
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.02 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.02 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.01 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.99 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.99 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.94 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.94 | |
| KOG1495|consensus | 332 | 96.93 | ||
| KOG1502|consensus | 327 | 96.93 | ||
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.93 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.91 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.9 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.89 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.88 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 96.84 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.8 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.78 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.76 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.76 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.75 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 96.74 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.72 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 96.67 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.67 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 96.66 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.63 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.62 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.62 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.62 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.58 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.58 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.55 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.54 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.54 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.52 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 96.51 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.5 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.5 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.47 | |
| KOG2380|consensus | 480 | 96.42 | ||
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.41 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.39 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.38 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.36 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.34 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.31 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 96.27 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.2 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.18 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.14 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.12 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 96.12 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.12 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.12 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 96.11 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 96.1 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.09 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.08 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.07 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.04 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.03 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.02 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.97 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.95 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.93 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 95.92 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.88 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 95.87 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.86 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 95.86 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.85 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 95.76 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.75 | |
| KOG0069|consensus | 336 | 95.71 | ||
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.69 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 95.69 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 95.66 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.65 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.62 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.54 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.54 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.52 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 95.51 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 95.5 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.48 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 95.42 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.29 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.27 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 95.25 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.2 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 95.2 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 95.16 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.15 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 95.14 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.08 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.07 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.0 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.98 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.96 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 94.95 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 94.93 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 94.92 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 94.88 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 94.86 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.8 | |
| PLN02928 | 347 | oxidoreductase family protein | 94.78 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.77 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.69 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.68 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.65 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.62 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.62 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 94.61 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.57 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.57 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 94.55 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.55 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 94.53 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.52 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 94.49 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.47 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 94.41 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.4 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.37 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.32 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 94.3 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 94.29 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 94.24 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.23 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 94.22 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.21 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.21 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.2 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.19 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 94.15 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.15 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.12 | |
| KOG1494|consensus | 345 | 94.12 | ||
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 94.11 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 94.09 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.08 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.06 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.05 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.03 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 94.03 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 94.0 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.99 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 93.98 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 93.97 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.97 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 93.96 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 93.92 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.9 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 93.9 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.9 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 93.88 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 93.85 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.84 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 93.83 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 93.83 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 93.82 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 93.81 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 93.76 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 93.72 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 93.68 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 93.68 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.67 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.62 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 93.61 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 93.59 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 93.59 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 93.52 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.5 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 93.42 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 93.38 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 93.34 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.3 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 93.3 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 93.26 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.23 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 93.22 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.2 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 93.19 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 93.15 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.11 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.03 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 93.0 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 92.97 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 92.91 | |
| PRK05868 | 372 | hypothetical protein; Validated | 92.89 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 92.87 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 92.86 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 92.84 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 92.79 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 92.73 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.71 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 92.71 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 92.69 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 92.68 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 92.57 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 92.57 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 92.54 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 92.53 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 92.53 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 92.47 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 92.46 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 92.44 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 92.44 | |
| PLN02256 | 304 | arogenate dehydrogenase | 92.43 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 92.4 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 92.3 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 92.26 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.22 | |
| KOG2741|consensus | 351 | 92.22 | ||
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.18 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 92.16 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 92.14 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 92.07 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 92.07 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 92.06 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 92.05 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.03 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 92.02 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 91.97 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 91.94 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.89 | |
| KOG0022|consensus | 375 | 91.87 | ||
| PRK06182 | 273 | short chain dehydrogenase; Validated | 91.83 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 91.81 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 91.81 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 91.78 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 91.77 | |
| PLN00135 | 309 | malate dehydrogenase | 91.74 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 91.69 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 91.63 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 91.6 | |
| PTZ00245 | 287 | ubiquitin activating enzyme; Provisional | 91.59 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 91.55 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 91.51 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 91.51 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 91.48 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 91.47 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 91.47 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.46 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.44 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 91.42 | |
| KOG1399|consensus | 448 | 91.4 | ||
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 91.32 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 91.32 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.31 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.28 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 91.27 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 91.24 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 91.21 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 91.21 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.19 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 91.09 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 91.01 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 91.0 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 90.99 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 90.98 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.97 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 90.95 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 90.89 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.84 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.82 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 90.78 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 90.78 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 90.76 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 90.66 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 90.62 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 90.54 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.49 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 90.34 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 90.3 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 90.29 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 90.26 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 90.24 | |
| KOG2614|consensus | 420 | 90.23 | ||
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 90.23 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 90.15 | |
| KOG3124|consensus | 267 | 90.1 | ||
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 90.09 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 90.08 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 90.08 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 90.05 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 89.99 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 89.96 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 89.95 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 89.94 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 89.94 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 89.84 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 89.84 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 89.84 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 89.83 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 89.82 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 89.81 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.76 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 89.72 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 89.68 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 89.58 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.57 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 89.54 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.54 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 89.52 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.48 |
| >KOG2666|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-85 Score=650.98 Aligned_cols=441 Identities=70% Similarity=1.134 Sum_probs=405.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|||+||+||||.|++.++|.+| +.++|+++|+|..++..||+..+|||||||+
T Consensus 1 ~~kiccigagyvggptcavia~kc-------------------------p~i~vtvvd~s~~ri~~wnsd~lpiyepgld 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKC-------------------------PDIEVTVVDISVPRINAWNSDKLPIYEPGLD 55 (481)
T ss_pred CceEEEecCcccCCcchheeeecC-------------------------CceEEEEEecCchHhhcccCCCCcccCCCHH
Confidence 479999999998766666666655 5558999999999999999999999999999
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++++++++.+++|++|.+.++++||+|||+|+||.+..|.++++.+|++|++++.++|+......+|||.+||||+.+++
T Consensus 56 evv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aae 135 (481)
T KOG2666|consen 56 EVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAE 135 (481)
T ss_pred HHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
.+..+ |... +.|..|+++++|||+
T Consensus 136 si~~i-------------------------------------------------------l~~n-~~~i~fqilsnpefl 159 (481)
T KOG2666|consen 136 SIEKI-------------------------------------------------------LNHN-SKGIKFQILSNPEFL 159 (481)
T ss_pred HHHHH-------------------------------------------------------HhcC-CCCceeEeccChHHh
Confidence 77653 3221 246779999999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEA 324 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~ 324 (598)
.+|.++.++++|+||++||.+..++..|.+.++.+|+.+.+..+++.+...++|+.||+.|+|++.+|+.+|.++++|++
T Consensus 160 aegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salcea 239 (481)
T KOG2666|consen 160 AEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEA 239 (481)
T ss_pred cccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHH---------------HHHHh
Q psy11160 325 TGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL---------------YESLF 389 (598)
Q Consensus 325 ~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~---------------i~~~~ 389 (598)
.|+|..||..+++.++|||+.||+.+.||||+||+||+-.|..+|+.+|+|++++||+++ |.+++
T Consensus 240 tgadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smF 319 (481)
T KOG2666|consen 240 TGADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMF 319 (481)
T ss_pred cCCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999764 66777
Q ss_pred cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhccc-----ccc--------cCC
Q psy11160 390 NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELD-----PEL--------LDH 456 (598)
Q Consensus 390 ~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~-----~~~--------~~~ 456 (598)
+.+.+|||+|||||||.+|+|+||||++.+++.|++.++++.+|||.+..+++..+|..+. |.+ ..
T Consensus 320 NTVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~dwdhp~~l~~~s~~~V~- 398 (481)
T KOG2666|consen 320 NTVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKFDWDHPLHLQPMSPTTVS- 398 (481)
T ss_pred hccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccccccCcccccccChhhhh-
Confidence 8899999999999999999999999999999999999999999999999999998884320 000 11
Q ss_pred CceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccch
Q psy11160 457 NAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527 (598)
Q Consensus 457 ~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~i 527 (598)
..+.+..|+|+|.++|.+++|+|.|++|+++|+++|.+.|.+|.+||||||++|.+++++.||..+++|..
T Consensus 399 k~VtV~sD~Y~A~k~AHai~ilTEWDeFk~Ldy~rI~~~MqkPAfiFDGR~ilD~~kLreIGF~v~sIGk~ 469 (481)
T KOG2666|consen 399 KQVTVTSDAYEATKDAHAICILTEWDEFKELDYQRIFDNMQKPAFIFDGRNILDHEKLREIGFIVYSIGKP 469 (481)
T ss_pred heeeeecchhhhhcccceEEEEechHhhhccCHHHHHHhccCCeEEecchhhccHHHHhhcceEEEEcCCC
Confidence 25678999999999999999999999999999999999999999999999999999999999999998854
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-84 Score=670.81 Aligned_cols=399 Identities=40% Similarity=0.639 Sum_probs=353.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||.||||+..|.+||+ .||+|+++|++++|++.+|+|.+||+||||++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~---------------------------~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ 53 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE---------------------------LGHEVVCVDIDESKVELLNKGISPIYEPGLEE 53 (414)
T ss_pred CceEEECCchHHHHHHHHHHH---------------------------cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHH
Confidence 699999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhcC-CceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRD-VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++++... ++++||+|++++++++|++|||||||.++++ ..|+++++++++.|++.++..++||++|||||||++
T Consensus 54 ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~ 128 (414)
T COG1004 54 LLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTE 128 (414)
T ss_pred HHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchH
Confidence 9997664 5699999999999999999999999997654 799999999999999999888999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
.+... +.... .+.+|.++++|||+
T Consensus 129 ~v~~~-------------------------------------------------------i~~~~-~~~~f~v~~NPEFL 152 (414)
T COG1004 129 EVRAK-------------------------------------------------------IREEN-SGKDFEVASNPEFL 152 (414)
T ss_pred HHHHH-------------------------------------------------------HHhhc-ccCCceEecChHHh
Confidence 77652 22211 24589999999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhccc-CCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWI-PRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~-~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
++|.|++++++|+||++|..+. ++.+.+++||+++. ...++..++..+||++|+++|+|++++|+|+||+..+|+
T Consensus 153 REG~Av~D~~~PdRIViG~~~~----~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 153 REGSAVYDFLYPDRIVIGVRSE----RAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred cCcchhhhccCCCeEEEccCCh----hHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764 46778899998763 235778899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh-HHHHH-----------HHHHHHHhcc
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE-VASYW-----------QQLYESLFNT 391 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~~~~~-----------~~~i~~~~~~ 391 (598)
+.|+|..++++.++.|+|||++|+++|+||||+|||||+++|...|+++|.+. +-+.+ -+.+.....
T Consensus 229 ~~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~~~- 307 (414)
T COG1004 229 KVGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNHLG- 307 (414)
T ss_pred HhCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 99999999999999999999999999999999999999999999999999651 11111 112333333
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+++++|+||||+|||||||+|+||++.|++.|++.|++|++|||.+.+..... . +.+.++.++++++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~---------~--~~~~~~~~~~~~~~~ 376 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRN---------F--PDVELESDAEEALKG 376 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhc---------C--CCceEeCCHHHHHhh
Confidence 78899999999999999999999999999999999999999999987665432 1 146889999999999
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH 511 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~ 511 (598)
+|++|+.|.|++|+++||+.+ .|+.| +|||+||+|++
T Consensus 377 aDaivi~tew~ef~~~d~~~~--~m~~~-~v~DgRni~~~ 413 (414)
T COG1004 377 ADAIVINTEWDEFRDLDFEKL--LMKTP-VVIDGRNIFDP 413 (414)
T ss_pred CCEEEEeccHHHHhccChhhh--hccCC-EEEecccccCC
Confidence 999999999999999999998 67777 89999999986
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-81 Score=685.34 Aligned_cols=440 Identities=63% Similarity=1.038 Sum_probs=373.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+||||+++|..||+ +++|++|+++|+++++++.+|+|..|++|++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~-------------------------~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ 55 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIAL-------------------------KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLD 55 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHH
Confidence 4789999999999999999999 234689999999999999999999999999999
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+++.+....++++|+++.+++++||++|||||||.+.++++.++.+|+++++++++.|+++++++++||.+|||||||++
T Consensus 56 ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~ 135 (473)
T PLN02353 56 EVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (473)
T ss_pred HHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence 99877544569999999889999999999999998765433345778888888888888888878888888888887776
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
.+.. .+.+. ..|.+|+++++|||+
T Consensus 136 ~~~~-------------------------------------------------------~l~~~-~~g~~f~v~~~PErl 159 (473)
T PLN02353 136 AIEK-------------------------------------------------------ILTHN-SKGINFQILSNPEFL 159 (473)
T ss_pred HHHH-------------------------------------------------------HHHhh-CCCCCeEEEECCCcc
Confidence 6653 23321 136789999999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEA 324 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~ 324 (598)
++|.+++++.+|+||++||.+.++++++.+.++.+|+.+.+..++.++++.+||++|+++|+|++++|+|+||++.+|++
T Consensus 160 ~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~ 239 (473)
T PLN02353 160 AEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (473)
T ss_pred CCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998655556688999999999985467788999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHH---------------HHHHHHHHh
Q psy11160 325 TGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASY---------------WQQLYESLF 389 (598)
Q Consensus 325 ~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~---------------~~~~i~~~~ 389 (598)
+|+|+.||+++++.++|||++|++||+||||||||||+++|.+.|++.|.++.... ++.+.+.+.
T Consensus 240 ~giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~ 319 (473)
T PLN02353 240 TGADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMF 319 (473)
T ss_pred hCCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999997521111 111222233
Q ss_pred cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhc---cccccc--------CC-C
Q psy11160 390 NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKE---LDPELL--------DH-N 457 (598)
Q Consensus 390 ~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~---~~~~~~--------~~-~ 457 (598)
+.++++||+|||+||||||+|+|+||+++|++.|+++|++|.+|||.+..++..+.+.. .|+ +. .. +
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 398 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWD-HPRHLQPMSPTAVK 398 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhccccccc-cccccccccccccc
Confidence 35789999999999999999999999999999999999999999999877655332200 000 00 00 1
Q ss_pred ceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccc
Q psy11160 458 AVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVID 526 (598)
Q Consensus 458 ~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~ 526 (598)
.+.+++++++++++||++|++|+|++|++++|+.+.+.|++|++|+|+||++|++.+++.||.|.++|+
T Consensus 399 ~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~~G~~y~~~G~ 467 (473)
T PLN02353 399 QVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGK 467 (473)
T ss_pred ceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHhCCcEEEEeCC
Confidence 357788889999999999999999999999999999889888799999999999999999999999886
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=625.86 Aligned_cols=401 Identities=30% Similarity=0.439 Sum_probs=347.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+||||||||+|+|..+|+ +|++|+|+|+|+.+++.+|+|..++.||+++
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~---------------------------~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~ 61 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFAS---------------------------AGFKVIGVDINQKKVDKLNRGESYIEEPDLD 61 (436)
T ss_pred ceEEEEEccccccHHHHHHHHH---------------------------cCCceEeEeCCHHHHHHHhCCcceeecCcHH
Confidence 4799999999999999999999 8999999999999999999999999999999
Q ss_pred HHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
++++..+ .+++++|+|+. .++.||+++||||||.+.
T Consensus 62 ~~v~~~v~~g~lraTtd~~-~l~~~dv~iI~VPTPl~~------------------------------------------ 98 (436)
T COG0677 62 EVVKEAVESGKLRATTDPE-ELKECDVFIICVPTPLKK------------------------------------------ 98 (436)
T ss_pred HHHHHHHhcCCceEecChh-hcccCCEEEEEecCCcCC------------------------------------------
Confidence 9888765 46799999997 577999999999999742
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHH-HHhh--cccCCceeeEEEC
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMN-VLKA--NHKTNVQFQILSN 240 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~-~L~~--~~~~g~~~~l~~~ 240 (598)
.++||||||++|+++|+++|++|++||+|||+|||||++++. +++. +|+.+.||.++||
T Consensus 99 ------------------~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lays 160 (436)
T COG0677 99 ------------------YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYS 160 (436)
T ss_pred ------------------CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeC
Confidence 257899999999999999999999999999999999998875 4553 3667789999999
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
|||..||+..+.+.+.+|| +||..+ ++.+....+|+.+.. ..+.+.+..+|||+|+.+|+||++||+++||++.
T Consensus 161 PERv~PG~~~~el~~~~kV-IgG~tp----~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElal 234 (436)
T COG0677 161 PERVLPGNVLKELVNNPKV-IGGVTP----KCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELAL 234 (436)
T ss_pred ccccCCCchhhhhhcCCce-eecCCH----HHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999998 688775 577778899999985 4777899999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh----HHH--------HHHHHHH--
Q psy11160 321 VCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE----VAS--------YWQQLYE-- 386 (598)
Q Consensus 321 la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~----~~~--------~~~~~i~-- 386 (598)
+|+++|+|++|++++++++|| ++.++||||+||||+|.|+++|.+.|+++|.+. +++ ++.+.+.
T Consensus 235 i~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~~rlI~tAreIN~~mP~~Vv~~~~~a 312 (436)
T COG0677 235 ICNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRTAREINDSMPRHVVDRVKEA 312 (436)
T ss_pred HHHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCchHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999999998 578899999999999999999999999999862 222 2212222
Q ss_pred --HHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCC
Q psy11160 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDD 464 (598)
Q Consensus 387 --~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (598)
+..+.+++.+|+|||||||+|+||+||||+++|++.|.++|.+|.+|||++..-.... .+. .+. ..+
T Consensus 313 l~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~--------~~~--~~~-~~~ 381 (436)
T COG0677 313 LNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTRE--------DGE--GVT-LAI 381 (436)
T ss_pred HHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhh--------hcc--ccc-hhh
Confidence 3334578899999999999999999999999999999999999999999997532111 111 111 367
Q ss_pred hhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhh
Q psy11160 465 PYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALL 515 (598)
Q Consensus 465 ~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~ 515 (598)
.+++++++|++|++|+|++|+.+|++.+.+. .++|+|+||++++....
T Consensus 382 ~e~al~~~D~vVi~tDH~~fk~id~~~i~~~---~~vivDtrnV~~~~~~~ 429 (436)
T COG0677 382 LEEALKDADAVVIATDHSEFKEIDYEAIGKE---AKVIVDTRNVWKREREA 429 (436)
T ss_pred HHHHhccCCEEEEEeccHHhhcCCHHHhccC---CcEEEECccccchhhhh
Confidence 8899999999999999999999999988753 45999999999986654
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-71 Score=597.11 Aligned_cols=396 Identities=22% Similarity=0.289 Sum_probs=331.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.|||+|||+||||++||..|++ ||+|++||+++++++.+++|..|++|++++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~----------------------------~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~ 57 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK----------------------------SRQVVGFDVNKKRILELKNGVDVNLETTEE 57 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc----------------------------CCEEEEEeCCHHHHHHHHCcCCCCCCCCHH
Confidence 4899999999999999999887 599999999999999999999999999999
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++... +++.++++.+ ++++||++|+|||||.+.+ +.+|++++.++.+.|++.++++++||++||++|||++
T Consensus 58 ~l~~~---g~l~~t~~~~-~~~~advvii~Vptp~~~~-----~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~ 128 (425)
T PRK15182 58 ELREA---RYLKFTSEIE-KIKECNFYIITVPTPINTY-----KQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTE 128 (425)
T ss_pred HHHhh---CCeeEEeCHH-HHcCCCEEEEEcCCCCCCC-----CCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchH
Confidence 98654 4688888875 7899999999999998643 4789999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh--cccCCceeeEEECCc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA--NHKTNVQFQILSNPE 242 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~--~~~~g~~~~l~~~Pe 242 (598)
+++. +++++ ++..+.+|.++++||
T Consensus 129 ~~~~------------------------------------------------------~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 129 EECV------------------------------------------------------PILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred HHHH------------------------------------------------------HHHHhccCCCcCCCeeEeeCCC
Confidence 7754 22332 222356799999999
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
|+.+|.+.+++.+|+|++.|+++ ++.+.++++|+.+.....++++++++||++|+++|+|++++|+|+||++.+|
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~~~-----~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~la 229 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGSTA-----QIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIF 229 (425)
T ss_pred cCCCCcccccccCCCeEEECCCH-----HHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999776543 5778899999999743467889999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh-H-------HH----HHHHHHHHHh-
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE-V-------AS----YWQQLYESLF- 389 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~-------~~----~~~~~i~~~~- 389 (598)
+++|+|+.++++++++++++ ..+.||+ |||||||||+++|.+.|++.|.+. + ++ ++.+.+...+
T Consensus 230 e~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~~~~v~~~~~~~l~ 306 (425)
T PRK15182 230 NRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMGNYVSEQLIKAMI 306 (425)
T ss_pred HHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988642 2235555 999999999999999999998751 1 11 1111122222
Q ss_pred ---cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChh
Q psy11160 390 ---NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPY 466 (598)
Q Consensus 390 ---~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (598)
+++++++|+|||+||||||+|+||||+++|++.|+++|++|.+|||++..+...+.+ +. .. .+ +
T Consensus 307 ~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~--------~~---~~-~~-~ 373 (425)
T PRK15182 307 KKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREY--------GI---IP-VS-E 373 (425)
T ss_pred hcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhc--------Cc---cc-ch-h
Confidence 246889999999999999999999999999999999999999999998765443311 00 00 01 2
Q ss_pred hhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChh
Q psy11160 467 DTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHD 512 (598)
Q Consensus 467 ~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~ 512 (598)
.++++||+|||+|+|++|+++||+.+.+.|+.|++|||+||+++.+
T Consensus 374 ~~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~~~~ 419 (425)
T PRK15182 374 VKSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVLPAE 419 (425)
T ss_pred hhhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCCChh
Confidence 3578899999999999999999999998777666999999999853
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-69 Score=582.87 Aligned_cols=396 Identities=40% Similarity=0.582 Sum_probs=345.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|+||++||..|++ .||+|++||+++++++.+++|..|++||++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~---------------------------~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~ 53 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLAD---------------------------LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDE 53 (411)
T ss_pred CEEEEECCCchhHHHHHHHHh---------------------------cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHH
Confidence 589999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhcC-CceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRD-VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++.+... +++++++++.+++++||+||+|||||...+ +.+|++++.++++.|.+.++++++|+++||++|||++
T Consensus 54 ~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~~~-----~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~ 128 (411)
T TIGR03026 54 LLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLKED-----GSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTE 128 (411)
T ss_pred HHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCCCC-----CCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchH
Confidence 9876543 458899999888999999999999997643 4789999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh--cccCCceeeEEECCc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA--NHKTNVQFQILSNPE 242 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~--~~~~g~~~~l~~~Pe 242 (598)
++.. ++++. ++..+.+|.++++||
T Consensus 129 ~l~~------------------------------------------------------~~~~~~~g~~~~~d~~v~~~Pe 154 (411)
T TIGR03026 129 EVVK------------------------------------------------------PILERASGLKLGEDFYLAYNPE 154 (411)
T ss_pred HHHH------------------------------------------------------HHHHhhcCCCCCCCceEEECCC
Confidence 8764 22332 111256789999999
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
|+.+|.+.+++.+|+++++|+++ ++.+.++++|+.++...+++++++++||++|+++|+|++++++|+||++.+|
T Consensus 155 ~~~~G~~~~~~~~~~~iv~G~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 155 FLREGNAVHDLLNPDRIVGGETE-----EAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred cCCCCChhhhhcCCCEEEEeCCH-----HHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998643 6889999999999732577889999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh-H-------HH----HHHHHHHHHhc
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE-V-------AS----YWQQLYESLFN 390 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~-------~~----~~~~~i~~~~~ 390 (598)
+++|+|+++++++++.++|++..++.||+||||+|++||++++.+.|++.|++. + ++ ++.+.+...++
T Consensus 230 ~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~~~~~~~~~~~l~ 309 (411)
T TIGR03026 230 EALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQPDYVVEKILDLLG 309 (411)
T ss_pred HHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999761 1 11 11122333334
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+++++|+|||+||||||+|+||||++.|++.|+++|++|.+|||.+..+.... + ..+.+++++++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~-~-------------~~~~~~~~~~~ 375 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKG-L-------------PLIDDLEEALK 375 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhh-c-------------ccCCCHHHHHh
Confidence 578999999999999999999999999999999999999999999987664321 1 12478899999
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
++|+||++|+|++|+++||+.+.+.|+.| +|||+||
T Consensus 376 ~ad~~v~~t~~~~~~~~~~~~~~~~~~~~-~v~D~~~ 411 (411)
T TIGR03026 376 GADALVILTDHDEFKDLDLEKIKDLMKGK-VVVDTRN 411 (411)
T ss_pred CCCEEEEecCCHHHhccCHHHHHHhcCCC-EEEeCCC
Confidence 99999999999999999999999888766 9999997
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=572.55 Aligned_cols=367 Identities=23% Similarity=0.358 Sum_probs=306.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+||||++||..|+. ||+|++||+|+++++.+++|..|++||++++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~----------------------------G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~ 52 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ----------------------------NHEVVALDILPSRVAMLNDRISPIVDKEIQQ 52 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh----------------------------CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH
Confidence 589999999999999977765 7999999999999999999999999999999
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
++.+. ..++++++++.+++++||+||+|||||.+. +...+|++++++++++|.+ ++++++||++||+||||+++
T Consensus 53 ~l~~~-~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~----k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~ 126 (388)
T PRK15057 53 FLQSD-KIHFNATLDKNEAYRDADYVIIATPTDYDP----KTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAA 126 (388)
T ss_pred HHHhC-CCcEEEecchhhhhcCCCEEEEeCCCCCcc----CCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHH
Confidence 88653 345777777888899999999999999642 2346788888888888887 68888888888888888877
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
+.. .+.+ ++++++|||++
T Consensus 127 l~~-------------------------------------------------------~~~~-------~~v~~~PE~l~ 144 (388)
T PRK15057 127 MHK-------------------------------------------------------KYRT-------ENIIFSPEFLR 144 (388)
T ss_pred HHH-------------------------------------------------------Hhhc-------CcEEECccccc
Confidence 654 1221 35789999999
Q ss_pred cCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHH-hcccCCc-eEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 246 EGTAMTDLFNADRILIGGEETPEGYAAIESLSWVY-EHWIPRK-HILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 246 ~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly-~~~~~~~-~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
+|.+++++.+|+|||+|+.+ +..+++.++| ..+.... +++++++++||++|+++|+|++++|+|+||++.+|+
T Consensus 145 ~G~a~~d~~~p~rvv~G~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae 219 (388)
T PRK15057 145 EGKALYDNLHPSRIVIGERS-----ERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAE 219 (388)
T ss_pred CCcccccccCCCEEEEEcCc-----HHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 2445555565 4443322 335899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhH------HHHHH-HHHHHHhcccCCCe
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEV------ASYWQ-QLYESLFNTVSDKH 396 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~------~~~~~-~~i~~~~~~~~~~~ 396 (598)
++|+|++++++++++++|+|..|+.||+||||||||||+.+|.+.+...+.+.+ ++... .+++.+. ..++++
T Consensus 220 ~~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~~~~~~~l~~~~~~~N~~~~~~~~~~~~-~~~~~~ 298 (388)
T PRK15057 220 SLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAIVDANRTRKDFIADAIL-SRKPQV 298 (388)
T ss_pred HhCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhccCCCcHHHHHHHHHHHHhHHHHHHHHH-HhcCCE
Confidence 999999999999999999999999999999999999999999888765554321 11111 1233333 236899
Q ss_pred EEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEE
Q psy11160 397 IAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIV 476 (598)
Q Consensus 397 V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adali 476 (598)
|+|||+||||||+|+||||+++|++.|+++|++|.+|||.+..... + ++.+++|++++++++|++|
T Consensus 299 i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~ 364 (388)
T PRK15057 299 VGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSF---F-----------NSRLERDLATFKQQADVII 364 (388)
T ss_pred EEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhh---c-----------CCeeeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999765431 1 3578999999999999999
Q ss_pred EEeeccchhhcc
Q psy11160 477 VCTEWDEFVTLD 488 (598)
Q Consensus 477 i~t~~~~f~~ld 488 (598)
+.|.|+||+++.
T Consensus 365 ~~~~~~~~~~~~ 376 (388)
T PRK15057 365 SNRMAEELKDVA 376 (388)
T ss_pred EcCCcHHHHhhh
Confidence 999999998865
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=560.77 Aligned_cols=391 Identities=28% Similarity=0.393 Sum_probs=320.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++||+|||+||||++||..|++ .||+|++||+|+++++.+++|..|++||+++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~---------------------------~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~ 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFAS---------------------------RQKQVIGVDINQHAVDTINRGEIHIVEPDLD 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHh---------------------------CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHH
Confidence 5799999999999999999999 8999999999999999999999999999999
Q ss_pred HHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+++.+.. .+.++++++. ++||+||+|||||.+.+ +.+|+++++++++.|+++++++++||++||++||++
T Consensus 56 ~~l~~~~~~g~l~~~~~~----~~aDvvii~vptp~~~~-----~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt 126 (415)
T PRK11064 56 MVVKTAVEGGYLRATTTP----EPADAFLIAVPTPFKGD-----HEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT 126 (415)
T ss_pred HHHHHHhhcCceeeeccc----ccCCEEEEEcCCCCCCC-----CCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence 9987543 3567777654 48999999999998654 478999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcc--cCCceeeEEECC
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANH--KTNVQFQILSNP 241 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~--~~g~~~~l~~~P 241 (598)
+++...+... . .-++.+. ..+.+|.++++|
T Consensus 127 ~~~~~~l~~~---------------------------~---------------------~~~~~~~~~g~~~~f~v~~~P 158 (415)
T PRK11064 127 EQMAEWLAEA---------------------------R---------------------PDLTFPQQAGEQADINIAYCP 158 (415)
T ss_pred HHHHHHHHHh---------------------------c---------------------cCCcccccccCCCCeEEEECC
Confidence 9887632100 0 0000000 013578999999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
||+.+|.+.+++.+|+++ +||.++ +++++++++|+.+++ ..++++++++||++|+++|+|++++|+|+||++.+
T Consensus 159 E~~~~G~~~~~~~~~~~v-vgG~~~----~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 232 (415)
T PRK11064 159 ERVLPGQVMVELIKNDRV-IGGMTP----VCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAFANELSLI 232 (415)
T ss_pred CccCCCChhhhhcCCCEE-EEeCCH----HHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 588543 678999999999985 56678999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh------HHH----HHHHHHHHH---
Q psy11160 322 CEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE------VAS----YWQQLYESL--- 388 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~------~~~----~~~~~i~~~--- 388 (598)
|+++|+|++++++++++++|+ .+++||+||||||||||+.+|.+.+... .+. +++ ++.+.+...
T Consensus 233 ae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~~~~~~-~~l~~~a~~~N~~~~~~v~~~~~~~l~~ 309 (415)
T PRK11064 233 CADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQNPQQ-ARLIRTAREVNDGKPHWVIDQVKAAVAD 309 (415)
T ss_pred HHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHHhcCCc-cHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 999999999999999999997 5789999999999999999997644321 111 111 111122222
Q ss_pred -----hcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcC-CeEEEeCCCCChhhhhhhhhcccccccCCCceEec
Q psy11160 389 -----FNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG-AKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSIL 462 (598)
Q Consensus 389 -----~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G-~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (598)
.+.+++++|+|||+||||||+|+||||+++|++.|+++| ++|.+|||.+...... ... .+. .
T Consensus 310 ~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~----------~~~-~~~-~ 377 (415)
T PRK11064 310 CLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKK----------LDG-LVT-L 377 (415)
T ss_pred hhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhh----------ccC-cee-e
Confidence 234678999999999999999999999999999999996 9999999997643210 111 122 3
Q ss_pred CChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEec
Q psy11160 463 DDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDG 505 (598)
Q Consensus 463 ~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~ 505 (598)
.+++++++++|++|++|+|++|+++||+++. .| +|||+
T Consensus 378 ~~~~~~~~~ad~vvi~t~~~~~~~~~~~~~~----~~-~v~D~ 415 (415)
T PRK11064 378 VSLDEALATADVLVMLVDHSQFKAINGDNVH----QQ-WVVDT 415 (415)
T ss_pred CCHHHHHhCCCEEEECCCCHHhccCCHHHhC----CC-EEEeC
Confidence 7889999999999999999999999998753 34 88885
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=286.68 Aligned_cols=174 Identities=38% Similarity=0.584 Sum_probs=138.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+||+|+++|..||+ .||+|+++|+|+++++.+|+|..|++||++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~---------------------------~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ 53 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE---------------------------KGHQVIGVDIDEEKVEALNNGELPIYEPGLDE 53 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH---------------------------TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHH
T ss_pred CEEEEECCCcchHHHHHHHHh---------------------------CCCEEEEEeCChHHHHHHhhccccccccchhh
Confidence 799999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++++.. .+++++++|..+++++||++|||||||.+.+ +.+|+++++++++.|++.++++++||++||+||||++
T Consensus 54 ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~-----~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 54 LLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDED-----GSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp HHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBETT-----TSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred hhccccccccchhhhhhhhhhhccceEEEecCCCcccc-----CCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 999876 6899999999999999999999999998764 4788888888888888888888888888888888887
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
++.. ++|++....+.+|+++++|||+
T Consensus 129 ~~~~------------------------------------------------------~ile~~~~~~~~f~la~~PErl 154 (185)
T PF03721_consen 129 ELLK------------------------------------------------------PILEKRSGKKEDFHLAYSPERL 154 (185)
T ss_dssp HHHH------------------------------------------------------HHHHHHCCTTTCEEEEE-----
T ss_pred Hhhh------------------------------------------------------hhhhhhcccccCCeEEECCCcc
Confidence 6654 4566532223689999999999
Q ss_pred CcCchhhhcCCCCEEEEccCC
Q psy11160 245 SEGTAMTDLFNADRILIGGEE 265 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~ 265 (598)
.+|++++++.+|+||+.|..+
T Consensus 155 ~~G~a~~d~~~~~rvV~G~~~ 175 (185)
T PF03721_consen 155 REGRAIEDFRNPPRVVGGCDD 175 (185)
T ss_dssp -TTSHHHHHHSSSEEEEEESS
T ss_pred CCCCcchhccCCCEEEEeCCc
Confidence 999999999999999877655
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >KOG2666|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=269.87 Aligned_cols=270 Identities=39% Similarity=0.537 Sum_probs=192.9
Q ss_pred HHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCc
Q psy11160 169 VLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGT 248 (598)
Q Consensus 169 ~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~ 248 (598)
+.++|+|+.+.++++.+||.|+|+|+|.|+......++|+++||||+.+.+. ++..+.. -.+|-
T Consensus 85 svntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaes----i~~il~~------------n~~~i 148 (481)
T KOG2666|consen 85 SVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAES----IEKILNH------------NSKGI 148 (481)
T ss_pred EecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHH----HHHHHhc------------CCCCc
Confidence 4578999999999999999999999999999999999999999999988763 4553311 24677
Q ss_pred hhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 249 AMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSE-------LSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 249 a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae-------~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
.+..+.+||++-.|. |+ +.||. .+++.+|+-.++| +..+++++....+|..+|-++.
T Consensus 149 ~fqilsnpeflaegt--------ai---kdl~n----pdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwss- 212 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGT--------AI---KDLFN----PDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSS- 212 (481)
T ss_pred eeEeccChHHhcccc--------hh---hhhcC----CceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHH-
Confidence 888899999775442 44 45553 4778777665554 4445566666667777777764
Q ss_pred HHHcCCCHHHHHHHHcC---CccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHh------ccc
Q psy11160 322 CEATGADVSEVAKAVGL---DSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLF------NTV 392 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~---~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~------~~~ 392 (598)
|+.+++.| .+||++ +|.++.+|+..|.+. .++-.... ..+
T Consensus 213 ---------elsklaanaflaqriss-----------------ins~salceatgadv-----~eva~avg~d~rig~kf 261 (481)
T KOG2666|consen 213 ---------ELSKLAANAFLAQRISS-----------------INSMSALCEATGADV-----SEVAYAVGTDSRIGSKF 261 (481)
T ss_pred ---------HHHHHHHHHHHHHHHhh-----------------hHHHHHHHHhcCCCH-----HHHHHHhcccccccHHH
Confidence 66666654 335543 899999999999872 23322211 001
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
-+..||+-|- |+-.|...++.-+
T Consensus 262 l~asvgfggs---------------------------------------------------------cfqkdilnlvyic 284 (481)
T KOG2666|consen 262 LNASVGFGGS---------------------------------------------------------CFQKDILNLVYIC 284 (481)
T ss_pred hhcccCcCch---------------------------------------------------------hHHHHHHHHHHHH
Confidence 1222333332 3222221111100
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEE
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHI 552 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i 552 (598)
+ .+++++.++ ...++..+|++|++|+++||++.|++++.++||
T Consensus 285 e------------~lnlpeva~-------------------------ywqqvi~~ndyqkrrfa~rii~smFNTVsdKKI 327 (481)
T KOG2666|consen 285 E------------CLNLPEVAE-------------------------YWQQVIKINDYQKRRFANRIISSMFNTVSDKKI 327 (481)
T ss_pred h------------cCCChHHHH-------------------------HHHHHhhhhHHHHHHHHHHHHHHHhhccccceE
Confidence 0 012222111 014577899999999999999999999999999
Q ss_pred EEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCCCCc
Q psy11160 553 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMSR 595 (598)
Q Consensus 553 ~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~~~~ 595 (598)
+|||+|||.||.|+||||++.+++.|++.++.+.+|||.+.++
T Consensus 328 AIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~e 370 (481)
T KOG2666|consen 328 AILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEE 370 (481)
T ss_pred EEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHH
Confidence 9999999999999999999999999999999999999999755
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=259.71 Aligned_cols=241 Identities=22% Similarity=0.245 Sum_probs=208.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e~~~~ 84 (598)
+||+|||+|.||.|||.+|.+ +||+|++||+++++ .+.+..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~---------------------------aG~~v~v~~r~~~ka~~~~~~----------- 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLK---------------------------AGHEVTVYNRTPEKAAELLAA----------- 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHH---------------------------CCCEEEEEeCChhhhhHHHHH-----------
Confidence 589999999999999999999 89999999999999 554443
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+.+...++.+++++||+||+|||.+. .+++++ ..+.+.+++++++|++||+.|.
T Consensus 43 --------~Ga~~a~s~~eaa~~aDvVitmv~~~~--------------~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~ 100 (286)
T COG2084 43 --------AGATVAASPAEAAAEADVVITMLPDDA--------------AVRAVLFGENGLLEGLKPGAIVIDMSTISPE 100 (286)
T ss_pred --------cCCcccCCHHHHHHhCCEEEEecCCHH--------------HHHHHHhCccchhhcCCCCCEEEECCCCCHH
Confidence 124566788889999999999997653 466666 6799999999999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
++++++. .+++ .| ..++++|
T Consensus 101 ~a~~~a~-------------------------------------------------------~~~~---~G--~~~lDAP 120 (286)
T COG2084 101 TARELAA-------------------------------------------------------ALAA---KG--LEFLDAP 120 (286)
T ss_pred HHHHHHH-------------------------------------------------------HHHh---cC--CcEEecC
Confidence 9988876 2333 23 5689999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
+.+.+..+..+.+ .||+||+. +++++++|+++.++. .++++|+.++++.+|+++|++.+.++..+.|...+
T Consensus 121 VsGg~~~A~~GtL---timvGG~~-----~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~l 191 (286)
T COG2084 121 VSGGVPGAAAGTL---TIMVGGDA-----EAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALAL 191 (286)
T ss_pred ccCCchhhhhCce---EEEeCCCH-----HHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888 59999986 689999999999984 68889999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCcccccc-------cc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 322 CEATGADVSEVAKAVGLDSRIGAK-------FL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~~~-------~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+++.|+|++.+.+++.+..-.+|. ++ ++.|||....+.||+++..+.+++.|++
T Consensus 192 a~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~ 254 (286)
T COG2084 192 AEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP 254 (286)
T ss_pred HHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999986533332 12 4788999999999999999999999986
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=294.01 Aligned_cols=280 Identities=34% Similarity=0.449 Sum_probs=197.8
Q ss_pred hhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchh
Q psy11160 171 KANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAM 250 (598)
Q Consensus 171 ~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~ 250 (598)
.||.+.++.+.++.+||+|+++|++.|+++++++.+||+|||||||||+ . +...+.. . ..|..+
T Consensus 87 ~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~---~-~~~~l~~-----------~-~~g~~f 150 (473)
T PLN02353 87 NTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE---A-IEKILTH-----------N-SKGINF 150 (473)
T ss_pred CCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH---H-HHHHHHh-----------h-CCCCCe
Confidence 3344334334456899999999999999999999999999999999997 3 4443321 0 236678
Q ss_pred hhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCc--hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy11160 251 TDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNT--WS-SELSKLAANAFLAQRISSINSLSAVCEATGA 327 (598)
Q Consensus 251 ~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~--~~-Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gi 327 (598)
+..++|||+..|.. ++ +++ ..+++++|+. .+ .+..+.+..+|.... .+ .....+++
T Consensus 151 ~v~~~PErl~~G~a--------~~---d~~----~p~riViG~~~~~~~~~a~~~~~~lY~~~~----~~--~~i~~~s~ 209 (473)
T PLN02353 151 QILSNPEFLAEGTA--------IE---DLF----KPDRVLIGGRETPEGQKAVQALKDVYAHWV----PE--ERIITTNL 209 (473)
T ss_pred EEEECCCccCCCCc--------cc---ccC----CCCEEEEccCCchhhHHHHHHHHHHHHHhh----cC--CCEEecCH
Confidence 89999999998852 22 222 1245555543 22 233444444444321 00 11234678
Q ss_pred CHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCC
Q psy11160 328 DVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKN 407 (598)
Q Consensus 328 d~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~ 407 (598)
..+||+|+++|.+| ..+++| +|+++.+|+++|++ +.++++.+. .++|| |.
T Consensus 210 ~~AE~~K~~eN~~r------a~~Iaf--------~NEla~lce~~giD-----~~eV~~~~~---~d~ri---g~----- 259 (473)
T PLN02353 210 WSAELSKLAANAFL------AQRISS--------VNAMSALCEATGAD-----VSQVSHAVG---KDSRI---GP----- 259 (473)
T ss_pred HHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHhCCC-----HHHHHHHhC---CCCcC---CC-----
Confidence 88999999999876 567789 99999999999998 357776653 12222 11
Q ss_pred CCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhc
Q psy11160 408 TGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTL 487 (598)
Q Consensus 408 t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~l 487 (598)
..+.|+. ++||| |++.|++.+...+. ++
T Consensus 260 -----------------------~~l~PG~--------------G~GG~---ClpkD~~~L~~~a~------------~~ 287 (473)
T PLN02353 260 -----------------------KFLNASV--------------GFGGS---CFQKDILNLVYICE------------CN 287 (473)
T ss_pred -----------------------CCCCCCC--------------CCCCc---chhhhHHHHHHHHH------------Hc
Confidence 1223543 37888 99999987754331 00
Q ss_pred cHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcC
Q psy11160 488 DYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTR 567 (598)
Q Consensus 488 d~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R 567 (598)
..++- +. ..+.+.++|+.||+++++++.+.+.+++++++|+|||+||||||||+|
T Consensus 288 g~~~~------~~-------------------l~~~~~~iN~~~~~~vv~~~~~~l~~~~~~~~VavlGlafK~~tdD~R 342 (473)
T PLN02353 288 GLPEV------AE-------------------YWKQVIKMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTR 342 (473)
T ss_pred CCchH------HH-------------------HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCEEEEEeeeecCCCCccc
Confidence 00000 00 024577899999999999999998777899999999999999999999
Q ss_pred CCchHHHHHHHHhCCCEEEEECCCCCC
Q psy11160 568 ESPAIHVCRTLLYEGAKLKIYDPKLMS 594 (598)
Q Consensus 568 ~sp~~~i~~~l~~~g~~v~~~DP~~~~ 594 (598)
+||++.|++.|.++|++|.+|||++..
T Consensus 343 ~Spa~~li~~L~~~G~~V~~~DP~v~~ 369 (473)
T PLN02353 343 ETPAIDVCKGLLGDKAKLSIYDPQVTE 369 (473)
T ss_pred cChHHHHHHHHHhCCCEEEEECCCCCh
Confidence 999999999999999999999999754
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=290.07 Aligned_cols=360 Identities=11% Similarity=0.072 Sum_probs=273.4
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+++..+|+|||+|.||.+||.+|.+ +||+|++||+++++.+.+.+.
T Consensus 1 ~~~~~~IGfIGLG~MG~~mA~~L~~---------------------------~G~~v~v~dr~~~~~~~l~~~------- 46 (1378)
T PLN02858 1 AQSAGVVGFVGLDSLSFELASSLLR---------------------------SGFKVQAFEISTPLMEKFCEL------- 46 (1378)
T ss_pred CCCCCeEEEEchhHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHc-------
Confidence 3556799999999999999999999 899999999999999988742
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv 158 (598)
+...+.++.+++++||+||+|+|++. .+++++ +.+.+.+++++++|++||+
T Consensus 47 ------------Ga~~~~s~~e~a~~advVi~~l~~~~--------------~v~~V~~g~~g~~~~l~~g~iivd~STi 100 (1378)
T PLN02858 47 ------------GGHRCDSPAEAAKDAAALVVVLSHPD--------------QVDDVFFGDEGAAKGLQKGAVILIRSTI 100 (1378)
T ss_pred ------------CCeecCCHHHHHhcCCEEEEEcCChH--------------HHHHHHhchhhHHhcCCCcCEEEECCCC
Confidence 23456789999999999999998763 456664 6788888999999999999
Q ss_pred chHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEE
Q psy11160 159 PVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL 238 (598)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~ 238 (598)
.|.++++++. .+.+ .|.++.++
T Consensus 101 ~p~~~~~la~-------------------------------------------------------~l~~---~g~~~~~l 122 (1378)
T PLN02858 101 LPLQLQKLEK-------------------------------------------------------KLTE---RKEQIFLV 122 (1378)
T ss_pred CHHHHHHHHH-------------------------------------------------------HHHh---cCCceEEE
Confidence 9999988875 2332 24335689
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe-cCchhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT-TNTWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~-~~~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
++|.++.+..+..+.+ .+|+||+. +++++++++++.|+. ..+++ |+.++|..+|+++|++.+..++.+.|
T Consensus 123 DaPVsGg~~~A~~G~L---~imvGG~~-----~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aE 193 (1378)
T PLN02858 123 DAYVSKGMSDLLNGKL---MIIASGRS-----DAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAE 193 (1378)
T ss_pred EccCcCCHHHHhcCCe---EEEEcCCH-----HHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999987766666666 48999976 589999999999984 45554 88999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHcCCcccccc-------cc--ccCccccccchhhhHHHHHHHHHHcCChh-HH----HHHH-
Q psy11160 318 LSAVCEATGADVSEVAKAVGLDSRIGAK-------FL--QASVGFGGSCFQKDILNLVYICECLNLPE-VA----SYWQ- 382 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l~~~~ri~~~-------~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~~----~~~~- 382 (598)
...++++.|+|++.++++++..+..++. ++ ++.++|....+.||+++..+.|++.|++. +. +.++
T Consensus 194 Al~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~ 273 (1378)
T PLN02858 194 AMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLIS 273 (1378)
T ss_pred HHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 9999999999999999999976532221 12 46678999999999999999999999862 11 1111
Q ss_pred ---------------HHHHHHh---------ccc---------------CCCeEEEEeccccCCCCcccCChHHHHHHHH
Q psy11160 383 ---------------QLYESLF---------NTV---------------SDKHIAILGFAFKKNTGDTRESPAIHVCRTL 423 (598)
Q Consensus 383 ---------------~~i~~~~---------~~~---------------~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L 423 (598)
++++... .++ ..++|+++|+. .....+++.|
T Consensus 274 a~~~G~g~~D~sav~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG----------~MG~~mA~~L 343 (1378)
T PLN02858 274 GSSSMQGDDTATSLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLG----------AMGFGMASHL 343 (1378)
T ss_pred HHhcCCCccChHHHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECch----------HHHHHHHHHH
Confidence 1111110 000 13789999983 5778899999
Q ss_pred HHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccch-hhc--cHHHHHhccCCCc
Q psy11160 424 LYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEF-VTL--DYKRIYEGMMKPA 500 (598)
Q Consensus 424 ~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f-~~l--d~~~l~~~m~~~~ 500 (598)
.+.|++|.+||+.....+. +.. .| .....++.++++++|+|+++...++- ++. ....+...+.+..
T Consensus 344 ~~~G~~V~v~dr~~~~~~~---l~~----~G----a~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ 412 (1378)
T PLN02858 344 LKSNFSVCGYDVYKPTLVR---FEN----AG----GLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGA 412 (1378)
T ss_pred HHCCCEEEEEeCCHHHHHH---HHH----cC----CeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCC
Confidence 9999999999985432211 110 11 23467899999999999999986642 221 1123344455556
Q ss_pred EEEecCCCC
Q psy11160 501 YIFDGRKIL 509 (598)
Q Consensus 501 iI~D~r~i~ 509 (598)
+++|...+-
T Consensus 413 ivVd~STvs 421 (1378)
T PLN02858 413 SIVLSSTVS 421 (1378)
T ss_pred EEEECCCCC
Confidence 889987765
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-30 Score=268.36 Aligned_cols=270 Identities=29% Similarity=0.419 Sum_probs=189.0
Q ss_pred cCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEE
Q psy11160 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRIL 260 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~ 260 (598)
..+..||+|++++++.|+++++...+||.+|||||||+++ +....... .++..+...+|||++=
T Consensus 90 ~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~----v~~~i~~~------------~~~~~f~v~~NPEFLR 153 (414)
T COG1004 90 EDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEE----VRAKIREE------------NSGKDFEVASNPEFLR 153 (414)
T ss_pred CCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHH----HHHHHHhh------------cccCCceEecChHHhc
Confidence 3678899999999999999999999999999999999984 45433211 2344777889999765
Q ss_pred EccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 261 IGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 261 vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
.|. | +|..+.| +++++|.... +..+.+..+|..... +... --.+++..+||+|.+.|.
T Consensus 154 EG~--------A------v~D~~~P-dRIViG~~~~-~a~~~~~ely~~~~~---~~~p--~l~t~~~~AE~IKyaaNa- 211 (414)
T COG1004 154 EGS--------A------VYDFLYP-DRIVIGVRSE-RAAAVLRELYAPFLR---QDVP--ILFTDLREAELIKYAANA- 211 (414)
T ss_pred Ccc--------h------hhhccCC-CeEEEccCCh-hHHHHHHHHHhhhhh---cCCC--EEEecchHHHHHHHHHHH-
Confidence 442 2 3444444 6777664321 123333333322100 0000 012588899999999875
Q ss_pred cccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHH
Q psy11160 341 RIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVC 420 (598)
Q Consensus 341 ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li 420 (598)
||...++| +|++..+|+..|++. .++++.+. .++||+
T Consensus 212 -----fLAtKIsF--------iNEia~ice~~g~D~-----~~V~~gIG---lD~RIG---------------------- 248 (414)
T COG1004 212 -----FLATKISF--------INEIANICEKVGADV-----KQVAEGIG---LDPRIG---------------------- 248 (414)
T ss_pred -----HHHHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHcC---CCchhh----------------------
Confidence 44555788 999999999999983 45555432 223322
Q ss_pred HHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCc
Q psy11160 421 RTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPA 500 (598)
Q Consensus 421 ~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~ 500 (598)
. +...|+ .++||. |++.|...++..|. ++.+ .+.
T Consensus 249 ~---------~fl~aG--------------~GyGGs---CfPKD~~AL~~~a~------------~~~~--------~~~ 282 (414)
T COG1004 249 N---------HFLNAG--------------FGYGGS---CFPKDTKALIANAE------------ELGY--------DPN 282 (414)
T ss_pred H---------hhCCCC--------------CCCCCc---CCcHhHHHHHHHHH------------hcCC--------chH
Confidence 0 111222 236666 99988876665431 1110 011
Q ss_pred EEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHh
Q psy11160 501 YIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580 (598)
Q Consensus 501 iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~ 580 (598)
+ .+++.++|+.||.+++++|.+.++ ++|++|+||||+|||||||+|+||++.|++.|++
T Consensus 283 l-------------------l~avv~vN~~qk~~~~~~i~~~~~--l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~ 341 (414)
T COG1004 283 L-------------------LEAVVEVNERRKDKLAEKILNHLG--LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQE 341 (414)
T ss_pred H-------------------HHHHHHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEEeecCCCccchhchHHHHHHHHHH
Confidence 1 156778899999999999999996 9999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCCCccCC
Q psy11160 581 EGAKLKIYDPKLMSRIDH 598 (598)
Q Consensus 581 ~g~~v~~~DP~~~~~~~~ 598 (598)
.|++|++|||.++++.++
T Consensus 342 ~Ga~V~aYDP~a~~~~~~ 359 (414)
T COG1004 342 KGAEVIAYDPVAMENAFR 359 (414)
T ss_pred CCCEEEEECchhhHHHHh
Confidence 999999999999987653
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=273.02 Aligned_cols=266 Identities=21% Similarity=0.253 Sum_probs=189.3
Q ss_pred cCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEE
Q psy11160 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRIL 260 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~ 260 (598)
..+.+|++|+.++.+.|++++++|.+||++||||||||+ +++.+.++... ....+.++...++|+|+.
T Consensus 90 ~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~---~~~~~~l~~~~---------g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 90 TYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTE---EECVPILARMS---------GMTFNQDFYVGYSPERIN 157 (425)
T ss_pred CCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchH---HHHHHHHHhcc---------CCCcCCCeeEeeCCCcCC
Confidence 456799999999999999999999999999999999998 46666443210 122356778899999987
Q ss_pred EccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 261 IGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 261 vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
.|.. ...+. ...++..|.. .+..+.+..+|....-. + .....++..+|++|+++|..
T Consensus 158 ~G~a--------~~~~~-------~~~riv~G~~--~~~~~~~~~ly~~~~~~--~----~~~~~~~~~AE~~Kl~~N~~ 214 (425)
T PRK15182 158 PGDK--------KHRLT-------NIKKITSGST--AQIAELIDEVYQQIISA--G----TYKAESIKVAEAAKVIENTQ 214 (425)
T ss_pred CCcc--------ccccc-------CCCeEEECCC--HHHHHHHHHHHHHHhhc--C----cEEecCHHHHHHHHHHHHHH
Confidence 6532 21111 1234544432 34555555445432100 0 11234567899999999876
Q ss_pred cccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHH
Q psy11160 341 RIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVC 420 (598)
Q Consensus 341 ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li 420 (598)
+ ...++| +|+++.+|+++|++. .++++.+..+ +
T Consensus 215 ~------av~Ia~--------~NE~a~lae~~GiD~-----~~v~~a~~~~--------------~-------------- 247 (425)
T PRK15182 215 R------DLNIAL--------VNELAIIFNRLNIDT-----EAVLRAAGSK--------------W-------------- 247 (425)
T ss_pred H------HHHHHH--------HHHHHHHHHHhCcCH-----HHHHHHhcCC--------------C--------------
Confidence 5 456788 999999999999983 4555543210 0
Q ss_pred HHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCc
Q psy11160 421 RTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPA 500 (598)
Q Consensus 421 ~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~ 500 (598)
.+..+.| ++ +||| |++.|++.+++.+. +....+.
T Consensus 248 --------~~~~~~p--------------G~-vGG~---ClpkD~~~L~~~a~--------------------~~g~~~~ 281 (425)
T PRK15182 248 --------NFLPFRP--------------GL-VGGH---CIGVDPYYLTHKSQ--------------------GIGYYPE 281 (425)
T ss_pred --------CcccCCC--------------Cc-cccc---cccccHHHHHHHHH--------------------hcCCCcH
Confidence 0011223 23 7888 99999988765441 0000111
Q ss_pred EEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHh---cCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHH
Q psy11160 501 YIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSL---FNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRT 577 (598)
Q Consensus 501 iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~---~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~ 577 (598)
+ .++++++|+.||+++++++.+.+ ++++++++|+||||||||||||+||||++.|++.
T Consensus 282 l-------------------~~~a~~iN~~~~~~v~~~~~~~l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~ 342 (425)
T PRK15182 282 I-------------------ILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKE 342 (425)
T ss_pred H-------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHH
Confidence 1 25678999999999999999988 4568899999999999999999999999999999
Q ss_pred HHhCCCEEEEECCCCC
Q psy11160 578 LLYEGAKLKIYDPKLM 593 (598)
Q Consensus 578 l~~~g~~v~~~DP~~~ 593 (598)
|.++|++|.+|||++.
T Consensus 343 L~~~g~~V~~~DP~v~ 358 (425)
T PRK15182 343 LGKYSCKVDIFDPWVD 358 (425)
T ss_pred HHhCCCEEEEECCCCC
Confidence 9999999999999964
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-28 Score=264.92 Aligned_cols=269 Identities=22% Similarity=0.331 Sum_probs=191.6
Q ss_pred cCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEE
Q psy11160 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRIL 260 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~ 260 (598)
..+.+|+++++++++.|++++++|.+||++||+||||++++...+.+. +.++ ..|+....+.++...++|||+.
T Consensus 89 ~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~---~~~~---~~~~~~g~~~~f~v~~~PE~~~ 162 (415)
T PRK11064 89 GDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA---RPDL---TFPQQAGEQADINIAYCPERVL 162 (415)
T ss_pred CCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh---ccCC---cccccccCCCCeEEEECCCccC
Confidence 346899999999999999999999999999999999999887655541 2211 3455444556788899999986
Q ss_pred EccCCCchhHHHHHHHHHHHhcccCCceEEec-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 261 IGGEETPEGYAAIESLSWVYEHWIPRKHILTT-NTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 261 vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~-~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~ 339 (598)
.|. +..... ...++..| +..+.+ .+...|.... . ......++..+|++|+++|.
T Consensus 163 ~G~--------~~~~~~-------~~~~vvgG~~~~~~~---~~~~ly~~~~----~---~~~~~~~~~~Ae~~Kl~~N~ 217 (415)
T PRK11064 163 PGQ--------VMVELI-------KNDRVIGGMTPVCSA---RASELYKIFL----E---GECVVTNSRTAEMCKLTENS 217 (415)
T ss_pred CCC--------hhhhhc-------CCCEEEEeCCHHHHH---HHHHHHHHhc----C---CCeeeCCHHHHHHHHHHHHH
Confidence 552 222111 12344333 333333 3333333211 0 01123466778999999987
Q ss_pred ccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHH
Q psy11160 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHV 419 (598)
Q Consensus 340 ~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~l 419 (598)
.+ ...++| +|++..+|+++|++. .++++.+. .+.+|
T Consensus 218 ~~------a~~ia~--------~nE~~~lae~~GiD~-----~~v~~~~~---~~~ri---------------------- 253 (415)
T PRK11064 218 FR------DVNIAF--------ANELSLICADQGINV-----WELIRLAN---RHPRV---------------------- 253 (415)
T ss_pred HH------HHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHhc---cCCCc----------------------
Confidence 65 456788 999999999999983 46666542 12222
Q ss_pred HHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCC
Q psy11160 420 CRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKP 499 (598)
Q Consensus 420 i~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~ 499 (598)
..+.|++ ++||| |++.|++.+++.+. + + +
T Consensus 254 -----------~~l~pG~--------------G~GG~---ClpkD~~~L~~~~~---------~----~----------~ 282 (415)
T PRK11064 254 -----------NILQPGP--------------GVGGH---CIAVDPWFIVAQNP---------Q----Q----------A 282 (415)
T ss_pred -----------ccCCCCC--------------CCCCc---cccccHHHHHHhcC---------C----c----------c
Confidence 2234543 37888 99999987644321 0 0 1
Q ss_pred cEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHh-------cCCCCCCEEEEEeeecCCCCCCcCCCchH
Q psy11160 500 AYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSL-------FNTVSDKHIAILGFAFKKNTGDTRESPAI 572 (598)
Q Consensus 500 ~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~-------~~~~~~~~i~v~GlafK~~~~d~R~sp~~ 572 (598)
.+ .++++++|+.||+++++++.+.+ ++++++++|+|||+|||+||||+|+||++
T Consensus 283 ~l-------------------~~~a~~~N~~~~~~v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~ 343 (415)
T PRK11064 283 RL-------------------IRTAREVNDGKPHWVIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAM 343 (415)
T ss_pred HH-------------------HHHHHHHHHHhHHHHHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHH
Confidence 01 15678999999999999999976 45688999999999999999999999999
Q ss_pred HHHHHHHhCC-CEEEEECCCCCC
Q psy11160 573 HVCRTLLYEG-AKLKIYDPKLMS 594 (598)
Q Consensus 573 ~i~~~l~~~g-~~v~~~DP~~~~ 594 (598)
.|++.|.++| ++|.+|||++..
T Consensus 344 ~l~~~L~~~gg~~v~~~DP~~~~ 366 (415)
T PRK11064 344 EIAELIAQWHSGETLVVEPNIHQ 366 (415)
T ss_pred HHHHHHHhcCCcEEEEECCCCCc
Confidence 9999999996 999999999753
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=238.81 Aligned_cols=241 Identities=18% Similarity=0.192 Sum_probs=197.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+||+|||+|.||.+||..|++ +|++|++||+++++++.+.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~---------------------------~G~~V~v~d~~~~~~~~~~~~----------- 43 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLK---------------------------QGHQLQVFDVNPQAVDALVDK----------- 43 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHc-----------
Confidence 589999999999999999999 899999999999999988742
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+...+.++.+++++||+||+|+|++. .++.++ +.+.+.+++++++|+.||++|.+
T Consensus 44 --------g~~~~~s~~~~~~~aDvVi~~vp~~~--------------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~ 101 (296)
T PRK15461 44 --------GATPAASPAQAAAGAEFVITMLPNGD--------------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQ 101 (296)
T ss_pred --------CCcccCCHHHHHhcCCEEEEecCCHH--------------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHH
Confidence 12345677788999999999997652 234443 45777788999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++.. +.+ .| +.++++|.
T Consensus 102 ~~~l~~~-------------------------------------------------------l~~---~g--~~~ldapV 121 (296)
T PRK15461 102 TDKLIAD-------------------------------------------------------MQA---KG--FSMMDVPV 121 (296)
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CcEEEccC
Confidence 9887752 222 12 45789999
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
...+..+..+.+ .+|+||++ +++++++++++.++. ..+++++.++|+.+|+++|++...+++.++|...+|
T Consensus 122 ~g~~~~a~~g~l---~~~~gg~~-----~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (296)
T PRK15461 122 GRTSDNAITGTL---LLLAGGTA-----EQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLC 192 (296)
T ss_pred CCCHHHHHhCcE---EEEECCCH-----HHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876655555555 47899975 589999999999984 677889999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccc--------ccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 323 EATGADVSEVAKAVGLDSRIGA--------KFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~--------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
++.|+|++.++++++.....++ .++ ++.++|....+.||+++..+.+++.|++
T Consensus 193 ~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~ 255 (296)
T PRK15461 193 EALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP 255 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC
Confidence 9999999999999986532111 111 3567898999999999999999999987
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=232.34 Aligned_cols=245 Identities=18% Similarity=0.232 Sum_probs=203.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|++||+|.||.+|+.+|.+ +||.|++||++.++.+.+...
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik---------------------------~G~kVtV~dr~~~k~~~f~~~---------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIK---------------------------AGYKVTVYDRTKDKCKEFQEA---------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHH---------------------------cCCEEEEEeCcHHHHHHHHHh----------
Confidence 4789999999999999999999 999999999999999998852
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~STv~~~~~ 163 (598)
+.+...+|.|+++++|+||.+||+|.+ .+.+...-..+.+.++++... |++||+.|+++
T Consensus 78 ---------Ga~v~~sPaeVae~sDvvitmv~~~~~-----------v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s 137 (327)
T KOG0409|consen 78 ---------GARVANSPAEVAEDSDVVITMVPNPKD-----------VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTS 137 (327)
T ss_pred ---------chhhhCCHHHHHhhcCEEEEEcCChHh-----------hHHHhcCCCcceeeccCCCceEEeccccCHHHH
Confidence 245567899999999999999998853 222222234566777787766 89999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
++|++. ++. .+..++++|+.
T Consensus 138 ~ei~~~-------------------------------------------------------i~~-----~~~~~vDAPVS 157 (327)
T KOG0409|consen 138 LEIAKA-------------------------------------------------------ISN-----KGGRFVDAPVS 157 (327)
T ss_pred HHHHHH-------------------------------------------------------HHh-----CCCeEEecccc
Confidence 988762 111 22457899998
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
+....+..+.+ .|++||++ +.++.+.++|+.+++ ..++.|..+.++.+|+++|+..+..+..+.|...+++
T Consensus 158 Gg~~~A~~G~L---timagGde-----~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~ 228 (327)
T KOG0409|consen 158 GGVKGAEEGTL---TIMAGGDE-----ALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALAD 228 (327)
T ss_pred CCchhhhcCeE---EEEecCcH-----HHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87666777777 58999976 578999999999984 6778899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCcccccccc---------ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFL---------QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l---------~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
++|+|...+++++++..-.++.+. ++.++|+...+.||++..+..|++.+.+
T Consensus 229 r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~ 289 (327)
T KOG0409|consen 229 RLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP 289 (327)
T ss_pred HcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999998543333322 4778999999999999999999999876
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=235.62 Aligned_cols=253 Identities=19% Similarity=0.243 Sum_probs=198.1
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
||+|||+|.||.+||..|++ .|++|++||+++++++.+.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~~------------ 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK---------------------------AGYQLHVTTIGPEVADELLAA------------ 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHC------------
Confidence 59999999999999999999 899999999999999887742
Q ss_pred HhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 87 VKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+...++++.+++++||+||+|+|++. .++.++ +.+.+.++++++|++.||+.|.++
T Consensus 42 -------g~~~~~~~~~~~~~aDivi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~ 100 (291)
T TIGR01505 42 -------GAVTAETARQVTEQADVIFTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIES 100 (291)
T ss_pred -------CCcccCCHHHHHhcCCEEEEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHH
Confidence 12234567788999999999998642 244443 456677889999999999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+++... +.. .| ++++++|.+
T Consensus 101 ~~l~~~-------------------------------------------------------l~~---~g--~~~~~~pv~ 120 (291)
T TIGR01505 101 KRFAKA-------------------------------------------------------VKE---KG--IDYLDAPVS 120 (291)
T ss_pred HHHHHH-------------------------------------------------------HHH---cC--CCEEecCCC
Confidence 877652 222 12 457788988
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
+.+..+..+.. .+++||++ ++++.++++++.++. .++++++.+.|+.+|+++|++...++++++|+..+|+
T Consensus 121 g~~~~a~~g~l---~i~~gg~~-----~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~ 191 (291)
T TIGR01505 121 GGEIGAIEGTL---SIMVGGDQ-----AVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFAS 191 (291)
T ss_pred CCHHHHhcCCE---EEEecCCH-----HHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555443 47889864 588999999999984 5677888899999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHHH
Q psy11160 324 ATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYESL 388 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~~ 388 (598)
+.|+|+.++.+++..+...++ .+. ++.++|+..|+.||++.+.+.+++.|++ .+.+.+.++.+.+
T Consensus 192 ~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 192 KAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred HcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 999999999999985432111 111 3458899999999999999999999986 2333333444433
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=233.45 Aligned_cols=242 Identities=18% Similarity=0.244 Sum_probs=196.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|+|+|||+|.||.++|..|++ .|++|++||+++++++.+.+.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~---------------------------~g~~v~~~d~~~~~~~~~~~~---------- 44 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLK---------------------------AGYSLVVYDRNPEAVAEVIAA---------- 44 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHC----------
Confidence 3689999999999999999999 899999999999998877642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+...++++.+++++||+||+|+|++. .++.++ +++.+.++++++|++.||+.|.
T Consensus 45 ---------g~~~~~~~~e~~~~~d~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~ 101 (296)
T PRK11559 45 ---------GAETASTAKAVAEQCDVIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPL 101 (296)
T ss_pred ---------CCeecCCHHHHHhcCCEEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHH
Confidence 23456778888899999999997642 344444 5677888999999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+++++... +.. .| ++++++|
T Consensus 102 ~~~~l~~~-------------------------------------------------------~~~---~g--~~~~d~p 121 (296)
T PRK11559 102 ASREIAAA-------------------------------------------------------LKA---KG--IEMLDAP 121 (296)
T ss_pred HHHHHHHH-------------------------------------------------------HHH---cC--CcEEEcC
Confidence 98877651 222 12 4578899
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
+++.++.+..+.. .+++||+. ++++.++++++.++. .++++++.++|+.+|+++|++.+.++++++|+..+
T Consensus 122 v~g~~~~a~~g~l---~i~~gg~~-----~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 192 (296)
T PRK11559 122 VSGGEPKAIDGTL---SVMVGGDK-----AIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVL 192 (296)
T ss_pred CCCCHHHHhhCcE---EEEECCCH-----HHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877665555544 37889864 578999999999974 56778888999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCcccc-------cccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 322 CEATGADVSEVAKAVGLDSRIG-------AKFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~-------~~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
|++.|+|++++.+++.+..-.+ ..++ ++.++|...++.||++++.+.|++.|++
T Consensus 193 ~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~ 255 (296)
T PRK11559 193 ATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP 255 (296)
T ss_pred HHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998643111 1111 4567899999999999999999999987
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=231.88 Aligned_cols=240 Identities=19% Similarity=0.208 Sum_probs=191.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.+||..|.+ .|++|++||+++. .+.+.+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~---------------------------~G~~v~v~~~~~~-~~~~~~------------ 40 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLAR---------------------------AGHQLHVTTIGPV-ADELLS------------ 40 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHH---------------------------CCCeEEEEeCCHh-HHHHHH------------
Confidence 489999999999999999999 8999999999874 344432
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+.....++.+++++||+||+|||++. .+++++ ..+.+.+.++++||++||+.|.+
T Consensus 41 -------~g~~~~~s~~~~~~~advVi~~v~~~~--------------~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~ 99 (292)
T PRK15059 41 -------LGAVSVETARQVTEASDIIFIMVPDTP--------------QVEEVLFGENGCTKASLKGKTIVDMSSISPIE 99 (292)
T ss_pred -------cCCeecCCHHHHHhcCCEEEEeCCChH--------------HHHHHHcCCcchhccCCCCCEEEECCCCCHHH
Confidence 123345677788899999999998652 455555 34667788999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++.. +.+ .| ..++++|.
T Consensus 100 ~~~~~~~-------------------------------------------------------~~~---~G--~~~vdaPV 119 (292)
T PRK15059 100 TKRFARQ-------------------------------------------------------VNE---LG--GDYLDAPV 119 (292)
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CCEEEecC
Confidence 9888752 222 23 35688898
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
...+..+..+.+ .+++||+. +++++++++|+.++. ..+++|+.++|+.+|+++|++.+.++..++|...++
T Consensus 120 sGg~~~a~~g~l---~~~~gG~~-----~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la 190 (292)
T PRK15059 120 SGGEIGAREGTL---SIMVGGDE-----AVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFA 190 (292)
T ss_pred CCCHHHHhcCcE---EEEEcCCH-----HHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544444443 47889975 689999999999984 677899999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 323 EATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
++.|+|++++++++....--++ .++ ++.++|....+.||+++..+.|++.|++
T Consensus 191 ~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~ 252 (292)
T PRK15059 191 SKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN 252 (292)
T ss_pred HHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999976532111 122 3567899999999999999999999987
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=231.77 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=195.4
Q ss_pred EECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh
Q psy11160 10 CIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKK 89 (598)
Q Consensus 10 viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~ 89 (598)
|||+|.||.+||..|++ .||+|++||+++++++.+.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~~--------------- 38 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLK---------------------------AGHPVRVFDLFPDAVEEAVAA--------------- 38 (288)
T ss_pred CCcccHhHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHc---------------
Confidence 68999999999999999 899999999999999988742
Q ss_pred hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHHHHHH
Q psy11160 90 TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRAAESI 166 (598)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~~~~~ 166 (598)
+...+.++.+++++||+||+|||++. .+++++ +++.+.++++++||+.||+.|.+++++
T Consensus 39 ----g~~~~~s~~~~~~~advVil~vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~ 100 (288)
T TIGR01692 39 ----GAQAAASPAEAAEGADRVITMLPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKL 100 (288)
T ss_pred ----CCeecCCHHHHHhcCCEEEEeCCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHH
Confidence 23456778889999999999998753 355555 678888899999999999999999877
Q ss_pred HHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCc
Q psy11160 167 MNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSE 246 (598)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~ 246 (598)
.. .+.+ .| ..++++|+++.+
T Consensus 101 ~~-------------------------------------------------------~~~~---~g--~~~vdaPv~Gg~ 120 (288)
T TIGR01692 101 AE-------------------------------------------------------LAAA---HG--AVFMDAPVSGGV 120 (288)
T ss_pred HH-------------------------------------------------------HHHH---cC--CcEEECCCCCCH
Confidence 65 2222 23 457999998876
Q ss_pred CchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy11160 247 GTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATG 326 (598)
Q Consensus 247 G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~g 326 (598)
..+..+.+ .+|+||+. +++++++++|+.++. ..+++|+.++++.+|+++|++.+.+++.++|...+|++.|
T Consensus 121 ~~a~~g~l---~~~~gg~~-----~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 191 (288)
T TIGR01692 121 GGARAGTL---TFMVGGVA-----EEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG 191 (288)
T ss_pred HHHhhCcE---EEEECCCH-----HHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66655555 47899975 578999999999974 5777888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCcccccc--------------c--cccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 327 ADVSEVAKAVGLDSRIGAK--------------F--LQASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 327 id~~ev~~~l~~~~ri~~~--------------~--l~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+|++.+.+++++....++. . -++.++|....+.||++...+.|++.|++
T Consensus 192 ld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~ 256 (288)
T TIGR01692 192 LDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP 256 (288)
T ss_pred CCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC
Confidence 9999999999965321110 0 14556788889999999999999999987
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-27 Score=251.34 Aligned_cols=251 Identities=18% Similarity=0.227 Sum_probs=172.5
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEE
Q psy11160 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILI 261 (598)
Q Consensus 182 ~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~v 261 (598)
...+||+|++++++.|++ ++++.+||++||||||||++ +... + ......++|||+..
T Consensus 89 ~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~----l~~~--------~----------~~~~v~~~PE~l~~ 145 (388)
T PRK15057 89 TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAA----MHKK--------Y----------RTENIIFSPEFLRE 145 (388)
T ss_pred CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHH----HHHH--------h----------hcCcEEECcccccC
Confidence 357899999999999998 79999999999999999972 3320 1 11234679999988
Q ss_pred ccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 262 GGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSS-ELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 262 Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~A-e~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~ 339 (598)
|.. ++ +++ ..+++.+|. ...+ +.++++...+....+ .. ...+...+|++|+++|.
T Consensus 146 G~a--------~~---d~~----~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~------~~--~~~~~~~AE~~Kl~~N~ 202 (388)
T PRK15057 146 GKA--------LY---DNL----HPSRIVIGERSERAERFAALLQEGAIKQNI------PT--LFTDSTEAEAIKLFANT 202 (388)
T ss_pred Ccc--------cc---ccc----CCCEEEEEcCcHHHHHHHHHHHhhhhcCCC------ce--eeCCHHHHHHHHHHHHH
Confidence 742 22 121 124555543 2222 222222111111001 00 13566778999999987
Q ss_pred ccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHH
Q psy11160 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHV 419 (598)
Q Consensus 340 ~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~l 419 (598)
.+ ..+++| +|+++.+|+++|++. .++++.+. .+.||+ .
T Consensus 203 ~~------a~~Ia~--------~NE~a~lae~~GiD~-----~eV~~a~~---~d~ri~---~----------------- 240 (388)
T PRK15057 203 YL------AMRVAY--------FNELDSYAESLGLNT-----RQIIEGVC---LDPRIG---N----------------- 240 (388)
T ss_pred HH------HHHHHH--------HHHHHHHHHHhCcCH-----HHHHHHhc---CCCCCC---C-----------------
Confidence 65 556788 999999999999983 46666553 122221 0
Q ss_pred HHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCC
Q psy11160 420 CRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKP 499 (598)
Q Consensus 420 i~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~ 499 (598)
..+.|+ +++||| |++.|++.++..+. +.+.+
T Consensus 241 -----------~~l~pG--------------~G~GG~---ClpkD~~~L~~~~~------------~~~~~--------- 271 (388)
T PRK15057 241 -----------HYNNPS--------------FGYGGY---CLPKDTKQLLANYQ------------SVPNN--------- 271 (388)
T ss_pred -----------ccCCCC--------------CCCCCc---ChhhhHHHHHHhcc------------CCCcH---------
Confidence 111243 347888 99999987643320 00100
Q ss_pred cEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHH
Q psy11160 500 AYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLL 579 (598)
Q Consensus 500 ~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~ 579 (598)
+ .++++++|+.||+++++++.+. ++++|+||||||||||||+||||++.|++.|.
T Consensus 272 -l-------------------~~~~~~~N~~~~~~~~~~~~~~-----~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~ 326 (388)
T PRK15057 272 -L-------------------ISAIVDANRTRKDFIADAILSR-----KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIK 326 (388)
T ss_pred -H-------------------HHHHHHHHHHhHHHHHHHHHHh-----cCCEEEEEcceeCCCCCccccChHHHHHHHHH
Confidence 1 2567899999999999999863 57899999999999999999999999999999
Q ss_pred hCCCEEEEECCCCCC
Q psy11160 580 YEGAKLKIYDPKLMS 594 (598)
Q Consensus 580 ~~g~~v~~~DP~~~~ 594 (598)
++|++|.+|||++..
T Consensus 327 ~~G~~v~~~DP~~~~ 341 (388)
T PRK15057 327 AKGVEVIIYEPVMKE 341 (388)
T ss_pred hCCCEEEEECCCCCc
Confidence 999999999999754
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-26 Score=239.32 Aligned_cols=214 Identities=22% Similarity=0.368 Sum_probs=165.9
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT-NTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~-~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
..|.++...++|||+++|... .++. ...+++.| ++.++|+++.+...+.. ..+-
T Consensus 150 ~~~~Df~laysPERv~PG~~~--------~el~-------~~~kVIgG~tp~~~e~a~~lY~~iv~----------~~~~ 204 (436)
T COG0677 150 KFGEDFYLAYSPERVLPGNVL--------KELV-------NNPKVIGGVTPKCAELAAALYKTIVE----------GVIP 204 (436)
T ss_pred cccceeeEeeCccccCCCchh--------hhhh-------cCCceeecCCHHHHHHHHHHHHHheE----------EEEE
Confidence 345678889999999999642 2222 13455443 56777776655444432 2445
Q ss_pred HcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEecc
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFA 403 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGla 403 (598)
..+...+||.|+++|.+| +.++++ +|+|+-+|+++|++. | ++|+.++.
T Consensus 205 vts~~tAEm~Kl~EN~fR------dVNIAL--------aNElali~~~~GIdv----w-evIeaAnt------------- 252 (436)
T COG0677 205 VTSARTAEMVKLTENTFR------DVNIAL--------ANELALICNAMGIDV----W-EVIEAANT------------- 252 (436)
T ss_pred cCChHHHHHHHHHhhhhh------HHHHHH--------HHHHHHHHHHhCCcH----H-HHHHHhcc-------------
Confidence 677888999999999988 789999 999999999999993 4 88887631
Q ss_pred ccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccc
Q psy11160 404 FKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDE 483 (598)
Q Consensus 404 fK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~ 483 (598)
| ..+.+|.|+. ++||| |++.|||+.+..+ ++
T Consensus 253 -~----------------------P~~~~~~PGp--------------GvGGH---CIpvDP~fl~~ka---------~~ 283 (436)
T COG0677 253 -K----------------------PRVNIFYPGP--------------GVGGH---CIPVDPYFLTWKA---------PE 283 (436)
T ss_pred -C----------------------CceeecCCCC--------------CCCCc---ccccCchheeecc---------cc
Confidence 1 1256677753 48999 9999999987765 23
Q ss_pred hhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHh---cCCCCCCEEEEEeeecC
Q psy11160 484 FVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSL---FNTVSDKHIAILGFAFK 560 (598)
Q Consensus 484 f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~---~~~~~~~~i~v~GlafK 560 (598)
|.. .+.+| +++|++|+.||.|+++++.+.| ++.+++.+|+|||||||
T Consensus 284 yg~-----------~~rlI-------------------~tAreIN~~mP~~Vv~~~~~al~~~~k~~~~skIlvlGlayK 333 (436)
T COG0677 284 YGL-----------PARLI-------------------RTAREINDSMPRHVVDRVKEALNKAGKPLSGSKILVLGLAYK 333 (436)
T ss_pred cCC-----------chHHH-------------------HHHHHHhccCCHHHHHHHHHHHHHcCCCCcCceEEEEEeeec
Confidence 221 11122 6789999999999999999866 67788999999999999
Q ss_pred CCCCCcCCCchHHHHHHHHhCCCEEEEECCCCCC
Q psy11160 561 KNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594 (598)
Q Consensus 561 ~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~~~ 594 (598)
+|+||+||||+++|++.|.++|++|.+|||++.+
T Consensus 334 ~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~ 367 (436)
T COG0677 334 GDVDDLRESPALDIIELLEEWGGEVLVYDPYVKE 367 (436)
T ss_pred CCCcccccCchHHHHHHHHHhCCeEEEECCCCCc
Confidence 9999999999999999999999999999999974
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=252.79 Aligned_cols=244 Identities=14% Similarity=0.103 Sum_probs=199.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|+||.+||..|++ .||+|++||+++++.+.+...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~~---------- 366 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLK---------------------------SNFSVCGYDVYKPTLVRFENA---------- 366 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHc----------
Confidence 3789999999999999999999 899999999999999887642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.....++.+++++||+||+|||+|. .+++++ ..+.+.+++++++|++||+.|+
T Consensus 367 ---------Ga~~~~s~~e~~~~aDvVi~~V~~~~--------------~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~ 423 (1378)
T PLN02858 367 ---------GGLAGNSPAEVAKDVDVLVIMVANEV--------------QAENVLFGDLGAVSALPAGASIVLSSTVSPG 423 (1378)
T ss_pred ---------CCeecCCHHHHHhcCCEEEEecCChH--------------HHHHHHhchhhHHhcCCCCCEEEECCCCCHH
Confidence 12345678889999999999999874 344554 4577778899999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
++++++.. +.+ .|.++.++++|
T Consensus 424 ~~~~la~~-------------------------------------------------------l~~---~g~g~~~lDAP 445 (1378)
T PLN02858 424 FVIQLERR-------------------------------------------------------LEN---EGRDIKLVDAP 445 (1378)
T ss_pred HHHHHHHH-------------------------------------------------------HHh---hCCCcEEEEcc
Confidence 99888752 222 13456789999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEE-ecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHIL-TTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~-~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
+.+.+..+..+.+ .+|+||++ +++++++++|+.++. ..++ .++.++|+.+|+++|++.+.+++.++|+..
T Consensus 446 VsGg~~~A~~G~L---~imvgG~~-----~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~ 516 (1378)
T PLN02858 446 VSGGVKRAAMGTL---TIMASGTD-----EALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMA 516 (1378)
T ss_pred CCCChhhhhcCCc---eEEEECCH-----HHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877665655555 48899975 589999999999984 4555 457999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 321 VCEATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 321 la~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+|++.|+|++.++++++.....++ .++ ++.++|....+.||++++.+.+++.|++
T Consensus 517 la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~ 580 (1378)
T PLN02858 517 FGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP 580 (1378)
T ss_pred HHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999986543222 122 3567899999999999999999999987
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-25 Score=239.96 Aligned_cols=269 Identities=28% Similarity=0.369 Sum_probs=182.8
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEE
Q psy11160 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILI 261 (598)
Q Consensus 182 ~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~v 261 (598)
.+.+|+++++++++.|+++++++.+|+.+||+||||++ ++..+.++... ....+..+....+|++...
T Consensus 91 ~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~---~l~~~~~~~~~---------g~~~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 91 DGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTE---EVVKPILERAS---------GLKLGEDFYLAYNPEFLRE 158 (411)
T ss_pred CCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchH---HHHHHHHHhhc---------CCCCCCCceEEECCCcCCC
Confidence 46899999999999999999999999999999999997 34444322100 0112344556778887655
Q ss_pred ccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcc
Q psy11160 262 GGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 262 Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~r 341 (598)
|. +. ..++. ...+.+| +..+..+.+..+|....- + ......++..+|++|+++|..+
T Consensus 159 G~--------~~---~~~~~----~~~iv~G--~~~~~~~~~~~l~~~~~~---~---~~~~~~~~~~Ae~~Kl~~N~~~ 215 (411)
T TIGR03026 159 GN--------AV---HDLLN----PDRIVGG--ETEEAGEAVAELYAPIIE---D---GPVLVTSIETAEMIKLAENTFR 215 (411)
T ss_pred CC--------hh---hhhcC----CCEEEEe--CCHHHHHHHHHHHHHhcc---C---CCEEcCCHHHHHHHHHHHHHHH
Confidence 53 22 12221 2455555 234445555544443210 0 1112345667899999988654
Q ss_pred ccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHH
Q psy11160 342 IGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCR 421 (598)
Q Consensus 342 i~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~ 421 (598)
...++| +|++..+|+++|++. .++++.+.. +.+|+
T Consensus 216 ------a~~ia~--------~nE~~~la~~~GiD~-----~~v~~~~~~---~~~i~----------------------- 250 (411)
T TIGR03026 216 ------AVKIAF--------ANELARICEALGIDV-----YEVIEAAGT---DPRIG----------------------- 250 (411)
T ss_pred ------HHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHhCC---CCCCC-----------------------
Confidence 345677 999999999999983 345544321 11110
Q ss_pred HHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcE
Q psy11160 422 TLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501 (598)
Q Consensus 422 ~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~i 501 (598)
...|.|.++ +|++ |++.|+..+++.+. +......+
T Consensus 251 --------~~~~~pg~g--------------~gg~---c~~KD~~~l~~~a~--------------------~~g~~~~l 285 (411)
T TIGR03026 251 --------FNFLNPGPG--------------VGGH---CIPKDPLALIYKAK--------------------ELGYNPEL 285 (411)
T ss_pred --------CCcCCCCCC--------------CCCC---chhhhHHHHHHHHH--------------------hcCCCcHH
Confidence 123455542 4566 88888877654331 00000101
Q ss_pred EEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhC
Q psy11160 502 IFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581 (598)
Q Consensus 502 I~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~ 581 (598)
..++.++|+.||+++++++.+.+ +++.+++|+|||+||||||||+||||++.|++.|.++
T Consensus 286 -------------------~~~~~~~N~~~~~~~~~~~~~~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~ 345 (411)
T TIGR03026 286 -------------------IEAAREINDSQPDYVVEKILDLL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEK 345 (411)
T ss_pred -------------------HHHHHHHHHHhHHHHHHHHHHHh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhC
Confidence 15678999999999999999999 5789999999999999999999999999999999999
Q ss_pred CCEEEEECCCCCCc
Q psy11160 582 GAKLKIYDPKLMSR 595 (598)
Q Consensus 582 g~~v~~~DP~~~~~ 595 (598)
|++|.+|||++..+
T Consensus 346 g~~v~~~DP~~~~~ 359 (411)
T TIGR03026 346 GAKVKAYDPLVPEE 359 (411)
T ss_pred CCEEEEECCCCChh
Confidence 99999999998654
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=223.56 Aligned_cols=250 Identities=13% Similarity=0.102 Sum_probs=198.5
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++|+|||||.||.+||.+|++ +||+|++||+++++++.+.+.... .|.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~---------------------------~G~~V~V~NRt~~k~~~l~~~~~~---~Ga 54 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAE---------------------------KGFPISVYNRTTSKVDETVERAKK---EGN 54 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHh---------------------------CCCeEEEECCCHHHHHHHHHhhhh---cCC
Confidence 35789999999999999999999 899999999999999988752000 000
Q ss_pred HHHHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
..+....+++++++. +|+||+|||.+. .++++++.+.+.+.++++||+.||+.|
T Consensus 55 ---------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~--------------aV~~Vi~gl~~~l~~G~iiID~sT~~~ 111 (493)
T PLN02350 55 ---------LPLYGFKDPEDFVLSIQKPRSVIILVKAGA--------------PVDQTIKALSEYMEPGDCIIDGGNEWY 111 (493)
T ss_pred ---------cccccCCCHHHHHhcCCCCCEEEEECCCcH--------------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 113355678887775 999999997753 578888899999999999999999999
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
.++++++. .+++ .+++++++
T Consensus 112 ~~t~~~~~-------------------------------------------------------~l~~-----~Gi~flda 131 (493)
T PLN02350 112 ENTERRIK-------------------------------------------------------EAAE-----KGLLYLGM 131 (493)
T ss_pred HHHHHHHH-------------------------------------------------------HHHH-----cCCeEEeC
Confidence 99977764 2333 23578999
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC-----ceEEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR-----KHILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~-----~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
|+++.+-.+..+ | .+|+||+. +++++++++++.++.+ ..+++|+.++|..+|+++|.+....+..+
T Consensus 132 pVSGG~~gA~~G---~-~im~GG~~-----~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~i 202 (493)
T PLN02350 132 GVSGGEEGARNG---P-SLMPGGSF-----EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLI 202 (493)
T ss_pred CCcCCHHHhcCC---C-eEEecCCH-----HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 998766545444 3 58999976 6899999999999832 36788999999999999999999999999
Q ss_pred HHHHHHHHH-cCCCHHHHHHHH---cCCccccc------c-cc---ccCccccccchhhhHH------HHHHHHHHcCCh
Q psy11160 316 NSLSAVCEA-TGADVSEVAKAV---GLDSRIGA------K-FL---QASVGFGGSCFQKDIL------NLVYICECLNLP 375 (598)
Q Consensus 316 nE~~~la~~-~gid~~ev~~~l---~~~~ri~~------~-~l---~~~~gfgg~cl~KD~~------~L~~~a~~~G~~ 375 (598)
.|...++++ .|+|++++.+++ +.+.-.++ . +. +++++|-...+.||++ .....|.++|++
T Consensus 203 aEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~ 282 (493)
T PLN02350 203 SEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA 282 (493)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC
Confidence 999999998 699999999984 34321111 1 11 2556788899999999 899999999986
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=189.28 Aligned_cols=106 Identities=42% Similarity=0.655 Sum_probs=87.5
Q ss_pred EEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEE
Q psy11160 398 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVV 477 (598)
Q Consensus 398 ~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii 477 (598)
+|||+|||+||+|+||||++.|++.|.++|++|.+|||++..+....... ..++.++.+++++++++|++|+
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~D~vvl 72 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGK--------LEGVEVCDDLEEALKGADAVVL 72 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH--------HHCEEEESSHHHHHTTESEEEE
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCC--------ccceEEecCHHHHhcCCCEEEE
Confidence 68999999999999999999999999999999999999999887654210 0146778899999999999999
Q ss_pred EeeccchhhccHHHHHhccCCCcEEEecCCCCCh
Q psy11160 478 CTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH 511 (598)
Q Consensus 478 ~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~ 511 (598)
+|+|++|++++|+.+...|+++++|+|+||++|+
T Consensus 73 ~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~~~d~ 106 (106)
T PF03720_consen 73 ATDHDEFRELDWEEIAKLMRKPPVIIDGRNILDP 106 (106)
T ss_dssp SS--GGGGCCGHHHHHHHSCSSEEEEESSSTSTH
T ss_pred EecCHHHhccCHHHHHHhcCCCCEEEECccccCc
Confidence 9999999999999999999888899999999985
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=209.30 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=190.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+|||+|.||.+||..|++ +|++|++||+++++.+.+.+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~---------------------------~g~~v~v~dr~~~~~~~~~~~----------- 42 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRE---------------------------DGHEVVGYDVNQEAVDVAGKL----------- 42 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHC-----------
Confidence 489999999999999999999 899999999999999887642
Q ss_pred HHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+...+.++++++++ +|+||+|+|++. .++++++.+.+.++++++||+.||+.|.+
T Consensus 43 --------g~~~~~s~~~~~~~~~~advVi~~vp~~~--------------~~~~v~~~i~~~l~~g~ivid~st~~~~~ 100 (299)
T PRK12490 43 --------GITARHSLEELVSKLEAPRTIWVMVPAGE--------------VTESVIKDLYPLLSPGDIVVDGGNSRYKD 100 (299)
T ss_pred --------CCeecCCHHHHHHhCCCCCEEEEEecCch--------------HHHHHHHHHhccCCCCCEEEECCCCCchh
Confidence 23456677777766 699999998652 46777788888899999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++. .+.+ .| +.++++|.
T Consensus 101 ~~~~~~-------------------------------------------------------~~~~---~g--~~~vdapV 120 (299)
T PRK12490 101 DLRRAE-------------------------------------------------------ELAE---RG--IHYVDCGT 120 (299)
T ss_pred HHHHHH-------------------------------------------------------HHHH---cC--CeEEeCCC
Confidence 987765 1222 23 45789998
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC--ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR--KHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~--~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
.+.+-.+..+. .+++||+. +++++++++++.++.. ..+++|+.++|..+|+++|++....+..+.|...
T Consensus 121 ~G~~~~a~~g~----~~~~gG~~-----~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~ 191 (299)
T PRK12490 121 SGGVWGLRNGY----CLMVGGDK-----EIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLE 191 (299)
T ss_pred CCCHHHHhcCC----eEEecCCH-----HHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654444442 37899975 5899999999999841 4678899999999999999999999999999999
Q ss_pred HHHHcC--CCHHHHHHHHcCCcccccc--------ccccCccccccchhhhH---HHHHHHHHHcCCh
Q psy11160 321 VCEATG--ADVSEVAKAVGLDSRIGAK--------FLQASVGFGGSCFQKDI---LNLVYICECLNLP 375 (598)
Q Consensus 321 la~~~g--id~~ev~~~l~~~~ri~~~--------~l~~~~gfgg~cl~KD~---~~L~~~a~~~G~~ 375 (598)
++++.| +|+.+++++++......+. +..-...+....+.||+ ....+.|.+.|++
T Consensus 192 l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~ 259 (299)
T PRK12490 192 LLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA 259 (299)
T ss_pred HHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC
Confidence 999999 9999999999864311111 11101123457788998 6888899999987
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=200.34 Aligned_cols=241 Identities=16% Similarity=0.169 Sum_probs=186.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+|||+|.||.+||..|++ +|++|++||+++++.+.+.+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~---------------------------~g~~v~v~dr~~~~~~~~~~~----------- 42 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLR---------------------------GGHEVVGYDRNPEAVEALAEE----------- 42 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHH---------------------------CCCeEEEEECCHHHHHHHHHC-----------
Confidence 489999999999999999999 899999999999999887642
Q ss_pred HHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+.+.+.++++.++. +|+||+|+|.+. .++++++.+.+.+++++++|+.||+.|.+
T Consensus 43 --------g~~~~~~~~e~~~~~~~~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~ 100 (301)
T PRK09599 43 --------GATGADSLEELVAKLPAPRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKD 100 (301)
T ss_pred --------CCeecCCHHHHHhhcCCCCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhH
Confidence 23456677777665 699999997652 46777788888899999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++. .+++ .| +.++++|.
T Consensus 101 ~~~~~~-------------------------------------------------------~~~~---~g--~~~~dapv 120 (301)
T PRK09599 101 DIRRAE-------------------------------------------------------LLAE---KG--IHFVDVGT 120 (301)
T ss_pred HHHHHH-------------------------------------------------------HHHH---cC--CEEEeCCC
Confidence 877664 1222 23 45788998
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC---ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR---KHILTTNTWSSELSKLAANAFLAQRISSINSLS 319 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~---~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~ 319 (598)
.+.+..+..+. .+|+||+. +++++++++++.+... ..+++|+.++|..+|+++|++....+....|..
T Consensus 121 sG~~~~a~~g~----~~~~gG~~-----~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~ 191 (301)
T PRK09599 121 SGGVWGLERGY----CLMIGGDK-----EAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGF 191 (301)
T ss_pred CcCHHHHhcCC----eEEecCCH-----HHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654444442 48899975 6899999999999841 467889999999999999999999999999999
Q ss_pred HHHHH--cCCCHHHHHHHHcCCccccccc-------cccCcccc-ccchhhh---HHHHHHHHHHcCCh
Q psy11160 320 AVCEA--TGADVSEVAKAVGLDSRIGAKF-------LQASVGFG-GSCFQKD---ILNLVYICECLNLP 375 (598)
Q Consensus 320 ~la~~--~gid~~ev~~~l~~~~ri~~~~-------l~~~~gfg-g~cl~KD---~~~L~~~a~~~G~~ 375 (598)
.++++ .|+|+.+++++++...-+++.+ +.-++.|. ..-+.|| ++.....|.+.|++
T Consensus 192 ~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~ 260 (301)
T PRK09599 192 ELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP 260 (301)
T ss_pred HHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 99999 9999999999998654222211 11122221 1123455 47788888888876
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=199.40 Aligned_cols=208 Identities=13% Similarity=0.135 Sum_probs=170.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~~~ 84 (598)
++|+|||+|.||.+||.+|++ +||+|++||+++++++.+++. ..+ +
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~---------------------------~G~~V~v~dr~~~~~~~l~~~~~~~----g-- 48 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS---------------------------RGFKISVYNRTYEKTEEFVKKAKEG----N-- 48 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHhhhhc----C--
Confidence 589999999999999999999 899999999999999988752 110 0
Q ss_pred HHHhhhcCCceEEecCHHHHhc---cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ---KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~---~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
..+..+.+++++++ ++|+||++|+.+ ..++++++++.+.+.++++||+.||..+.
T Consensus 49 --------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~ 106 (470)
T PTZ00142 49 --------TRVKGYHTLEELVNSLKKPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYL 106 (470)
T ss_pred --------CcceecCCHHHHHhcCCCCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHH
Confidence 12456778888876 589999998654 26888889999999999999999999998
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
.+++... .+.+ .+++++++|
T Consensus 107 dt~~r~~-------------------------------------------------------~l~~-----~Gi~fldap 126 (470)
T PTZ00142 107 NTERRIK-------------------------------------------------------RCEE-----KGILYLGMG 126 (470)
T ss_pred HHHHHHH-------------------------------------------------------HHHH-----cCCeEEcCC
Confidence 8866653 1222 235689999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC-----ceEEecCchhHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR-----KHILTTNTWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~-----~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
..+.+..+.++ | .+|+||+. +++++++++++.+... ...++|+.++|..+|+++|.+....+..+.
T Consensus 127 VSGG~~gA~~G---~-~lm~GG~~-----~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~ia 197 (470)
T PTZ00142 127 VSGGEEGARYG---P-SLMPGGNK-----EAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLIS 197 (470)
T ss_pred CCCCHHHHhcC---C-EEEEeCCH-----HHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 88765444443 2 59999976 6899999999999852 157789999999999999999999999999
Q ss_pred HHHHHHH-HcCCCHHHHHHHHc
Q psy11160 317 SLSAVCE-ATGADVSEVAKAVG 337 (598)
Q Consensus 317 E~~~la~-~~gid~~ev~~~l~ 337 (598)
|...+++ +.|+|..++.+++.
T Consensus 198 Ea~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 198 ESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHHhhcCCCHHHHHHHHH
Confidence 9999998 79999999999985
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=186.20 Aligned_cols=205 Identities=14% Similarity=0.179 Sum_probs=165.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+|||+|.||.+||..|++ +|++|++||+++++++.+.+...
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~---------------------------~g~~V~~~dr~~~~~~~l~~~g~--------- 44 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAK---------------------------RGHDCVGYDHDQDAVKAMKEDRT--------- 44 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHcCC---------
Confidence 489999999999999999999 89999999999999998875211
Q ss_pred HHhhhcCCceEEecCHHH---HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKS---AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~---~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
....++.+ .+..+|+||+|||.+ .++++++++.+.++++++||+.||+.|.+
T Consensus 45 ----------~~~~s~~~~~~~~~~~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~ 99 (298)
T TIGR00872 45 ----------TGVANLRELSQRLSAPRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKD 99 (298)
T ss_pred ----------cccCCHHHHHhhcCCCCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCccc
Confidence 11223333 345789999998764 47888889999999999999999999888
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++.. .+++ .++.++++|.
T Consensus 100 t~~~~~-------------------------------------------------------~~~~-----~g~~~vda~v 119 (298)
T TIGR00872 100 SLRRYK-------------------------------------------------------LLKE-----KGIHLLDCGT 119 (298)
T ss_pred HHHHHH-------------------------------------------------------HHHh-----cCCeEEecCC
Confidence 866654 1222 1246788888
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC--ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR--KHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~--~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
.+.+..+..+. .+++||+. ++++.++++++.+... ..+++|+.+++..+|+++|.+....+....|...
T Consensus 120 sGg~~~a~~G~----~~~~gG~~-----~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~ 190 (298)
T TIGR00872 120 SGGVWGRERGY----CFMIGGDG-----EAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFE 190 (298)
T ss_pred CCCHHHHhcCC----eeeeCCCH-----HHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554444442 47899975 6889999999999852 3678899999999999999999999999999999
Q ss_pred HHHHc--CCCHHHHHHHHcCCc
Q psy11160 321 VCEAT--GADVSEVAKAVGLDS 340 (598)
Q Consensus 321 la~~~--gid~~ev~~~l~~~~ 340 (598)
++++. |+|..++.++++...
T Consensus 191 l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 191 ILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred HHHHcCCCcCHHHHHHHHcCCc
Confidence 99998 579999999998754
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=190.23 Aligned_cols=207 Identities=15% Similarity=0.181 Sum_probs=165.9
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
+|+|||+|.||.+||..|++ +||+|++||+++++++.+.+...+ +
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~---------------------------~G~~V~v~drt~~~~~~l~~~~~~----g---- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMAD---------------------------HGFTVSVYNRTPEKTDEFLAEHAK----G---- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHh---------------------------cCCeEEEEeCCHHHHHHHHhhccC----C----
Confidence 48999999999999999999 899999999999999988742000 0
Q ss_pred HhhhcCCceEEecCHHHHh---ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 87 VKKTRDVNLFFSTDIKSAI---QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~---~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
..+....++++.+ +.+|+||+|||.+. .+.++++.+.+.++++++||+.||+.+..+
T Consensus 46 ------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~--------------~v~~Vi~~l~~~L~~g~iIID~gns~~~~t 105 (467)
T TIGR00873 46 ------KKIVGAYSIEEFVQSLERPRKIMLMVKAGA--------------PVDAVINQLLPLLEKGDIIIDGGNSHYPDT 105 (467)
T ss_pred ------CCceecCCHHHHHhhcCCCCEEEEECCCcH--------------HHHHHHHHHHhhCCCCCEEEECCCcCHHHH
Confidence 1133445566544 46899999997642 578888899999999999999999988887
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
++.+. .+.+ .+++++++|..
T Consensus 106 ~~~~~-------------------------------------------------------~l~~-----~gi~fvdapVs 125 (467)
T TIGR00873 106 ERRYK-------------------------------------------------------ELKA-----KGILFVGSGVS 125 (467)
T ss_pred HHHHH-------------------------------------------------------HHHh-----cCCEEEcCCCC
Confidence 65543 1222 23568999988
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCc-----eEEecCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRK-----HILTTNTWSSELSKLAANAFLAQRISSINSL 318 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~-----~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~ 318 (598)
+.+..+.++. .+|+||+. +++++++|+++.+..+. ..++|+.++|..+|+++|.+....+..+.|.
T Consensus 126 GG~~gA~~G~----~im~GG~~-----~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa 196 (467)
T TIGR00873 126 GGEEGARKGP----SIMPGGSA-----EAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEA 196 (467)
T ss_pred CCHHHHhcCC----cCCCCCCH-----HHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655454443 48899976 68999999999998521 3678999999999999999999999999999
Q ss_pred HHHHH-HcCCCHHHHHHHHc
Q psy11160 319 SAVCE-ATGADVSEVAKAVG 337 (598)
Q Consensus 319 ~~la~-~~gid~~ev~~~l~ 337 (598)
..+++ +.|+|..++.+++.
T Consensus 197 ~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 197 YDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred HHHHHHhcCCCHHHHHHHHH
Confidence 99985 79999999999994
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-20 Score=157.94 Aligned_cols=82 Identities=44% Similarity=0.718 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCC
Q psy11160 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNL 374 (598)
Q Consensus 295 ~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~ 374 (598)
++||++|+++|+|++++|+|+||++.+|+++|+|+.+|+++++.++|++..++.||+||||+|||||+.+|.+.+++.|.
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g~ 81 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELGY 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred hh
Q psy11160 375 PE 376 (598)
Q Consensus 375 ~~ 376 (598)
+.
T Consensus 82 ~~ 83 (96)
T PF00984_consen 82 PP 83 (96)
T ss_dssp HH
T ss_pred CH
Confidence 73
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-18 Score=177.35 Aligned_cols=258 Identities=18% Similarity=0.208 Sum_probs=173.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~~~ 84 (598)
|||+|||+|.||.++|..|++ .|++|++||+++++++.+++. ....+.++..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 54 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLAR---------------------------NGHDVTLWARDPEQAAEINADRENPRYLPGIK 54 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHcCcccccCCCCc
Confidence 689999999999999999999 899999999999999988863 2222222211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec-CCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS-TVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S-Tv~~~~~ 163 (598)
...+...++++++++++||+||+|||++ .++++++.+.+.+.++++|+..+ |+.+.+.
T Consensus 55 ------~~~~~~~~~~~~~~~~~~D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~ 113 (325)
T PRK00094 55 ------LPDNLRATTDLAEALADADLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTG 113 (325)
T ss_pred ------CCCCeEEeCCHHHHHhCCCEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCC
Confidence 1234677788888889999999998753 47788889999888899888776 8888766
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.+... +++.........++..|..
T Consensus 114 ~~~~~~-------------------------------------------------------l~~~~~~~~~~~~~~~P~~ 138 (325)
T PRK00094 114 KLLSEV-------------------------------------------------------LEEELPDLAPIAVLSGPSF 138 (325)
T ss_pred CcHHHH-------------------------------------------------------HHHHcCCCCceEEEECccH
Confidence 444331 1110000011234556654
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-----------------chhHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-----------------TWSSELSKLAANA 306 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-----------------~~~Ae~~Kl~~N~ 306 (598)
..+.. ...+..++.++.+. ++++.+.++|+..+- ......+ .+.++.+|+.+|.
T Consensus 139 ~~~~~----~g~~~~~~~~~~~~----~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~ 209 (325)
T PRK00094 139 AKEVA----RGLPTAVVIASTDE----ELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNA 209 (325)
T ss_pred HHHHH----cCCCcEEEEEeCCH----HHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccH
Confidence 33211 12223344444332 578889999986542 2222222 2667778999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc----ccc--ccccccCcccc--------------ccchhhhHHHHH
Q psy11160 307 FLAQRISSINSLSAVCEATGADVSEVAKAVGLDS----RIG--AKFLQASVGFG--------------GSCFQKDILNLV 366 (598)
Q Consensus 307 ~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~----ri~--~~~l~~~~gfg--------------g~cl~KD~~~L~ 366 (598)
+.+.....++|+..+|+++|+|+..+.+.+.... -.+ ++...++.-++ .....||+..+.
T Consensus 210 ~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~ 289 (325)
T PRK00094 210 RAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVY 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHH
Confidence 9999999999999999999999999988754320 001 11111111121 234469999999
Q ss_pred HHHHHcCCh
Q psy11160 367 YICECLNLP 375 (598)
Q Consensus 367 ~~a~~~G~~ 375 (598)
++++++|++
T Consensus 290 ~~a~~~~~~ 298 (325)
T PRK00094 290 ELAKKLGVE 298 (325)
T ss_pred HHHHHhCCC
Confidence 999999986
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=165.53 Aligned_cols=158 Identities=22% Similarity=0.241 Sum_probs=122.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+||+|||+|.||.+||.+|++ +||+|++||+++++.+.+.+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~---------------------------~g~~v~~~d~~~~~~~~~~~~---------- 43 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAK---------------------------AGYEVTVYDRSPEKAEALAEA---------- 43 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHH---------------------------TTTEEEEEESSHHHHHHHHHT----------
T ss_pred CCEEEEEchHHHHHHHHHHHHh---------------------------cCCeEEeeccchhhhhhhHHh----------
Confidence 4799999999999999999999 899999999999999988752
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHH--HHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARM--IAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~ivv~~STv~~~~ 162 (598)
+.+...++.+++++||+||+|||.+ ..+++++.+ +.+.+++++++|+.||+.|.+
T Consensus 44 ---------g~~~~~s~~e~~~~~dvvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~ 100 (163)
T PF03446_consen 44 ---------GAEVADSPAEAAEQADVVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPET 100 (163)
T ss_dssp ---------TEEEESSHHHHHHHBSEEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH
T ss_pred ---------hhhhhhhhhhHhhcccceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhh
Confidence 3678899999999999999998754 368888888 999999999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++++ .+++ .++.++++|.
T Consensus 101 ~~~~~~-------------------------------------------------------~~~~-----~g~~~vdapV 120 (163)
T PF03446_consen 101 SRELAE-------------------------------------------------------RLAA-----KGVRYVDAPV 120 (163)
T ss_dssp HHHHHH-------------------------------------------------------HHHH-----TTEEEEEEEE
T ss_pred hhhhhh-------------------------------------------------------hhhh-----ccceeeeeee
Confidence 988775 2333 2367889998
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT 291 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~ 291 (598)
.+.+..+.++.+ .+++||++ +++++++++++.++. .++++
T Consensus 121 ~Gg~~~a~~g~l---~~~~gG~~-----~~~~~~~~~l~~~~~-~v~~~ 160 (163)
T PF03446_consen 121 SGGPPGAEEGTL---TIMVGGDE-----EAFERVRPLLEAMGK-NVYHY 160 (163)
T ss_dssp ESHHHHHHHTTE---EEEEES-H-----HHHHHHHHHHHHHEE-EEEEE
T ss_pred ecccccccccce---EEEccCCH-----HHHHHHHHHHHHHhC-Cceee
Confidence 876555555554 48899975 689999999999983 34434
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=175.30 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCce
Q psy11160 16 VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNL 95 (598)
Q Consensus 16 vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 95 (598)
||.+||.+|++ +||+|++||+++++.+.+.+...+ ..+.
T Consensus 1 MG~~mA~nL~~---------------------------~G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~ 39 (459)
T PRK09287 1 MGKNLALNIAS---------------------------HGYTVAVYNRTPEKTDEFLAEEGK--------------GKKI 39 (459)
T ss_pred CcHHHHHHHHh---------------------------CCCeEEEECCCHHHHHHHHHhhCC--------------CCCe
Confidence 89999999999 899999999999999988752000 0236
Q ss_pred EEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHHHHHHHhh
Q psy11160 96 FFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA 172 (598)
Q Consensus 96 ~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~~~~l~~ 172 (598)
+...+++++++. +|+||+|||.+. .+.++++++.+.+.++++||+.||+.|..+++.+.
T Consensus 40 ~~~~s~~e~v~~l~~~~~Ii~mv~~g~--------------~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~---- 101 (459)
T PRK09287 40 VPAYTLEEFVASLEKPRKILLMVKAGA--------------PVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREK---- 101 (459)
T ss_pred EeeCCHHHHHhhCCCCCEEEEECCCch--------------HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH----
Confidence 677889888774 899999998763 67888899999999999999999999999876654
Q ss_pred ccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhh
Q psy11160 173 NHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTD 252 (598)
Q Consensus 173 ~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~ 252 (598)
.+.+ .+++++++|..+.+..+.++
T Consensus 102 ---------------------------------------------------~l~~-----~Gi~fvdapVSGG~~gA~~G 125 (459)
T PRK09287 102 ---------------------------------------------------ELAE-----KGIHFIGMGVSGGEEGALHG 125 (459)
T ss_pred ---------------------------------------------------HHHh-----cCCeEEecCCCCCHHHHhcC
Confidence 2333 23578999988765545444
Q ss_pred cCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCce-------EEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy11160 253 LFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH-------ILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE-A 324 (598)
Q Consensus 253 ~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~-------v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~-~ 324 (598)
| .+|+||+. ++++.++|+++.+.. .. .++|+.++|..+|+++|.+....+..+.|...+++ +
T Consensus 126 ---~-siM~GG~~-----~a~~~~~piL~~ia~-~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~ 195 (459)
T PRK09287 126 ---P-SIMPGGQK-----EAYELVAPILEKIAA-KVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDG 195 (459)
T ss_pred ---C-EEEEeCCH-----HHHHHHHHHHHHHhh-hhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 58999976 689999999999984 33 67899999999999999999999999999999999 5
Q ss_pred cCCCHHHHHHHHc
Q psy11160 325 TGADVSEVAKAVG 337 (598)
Q Consensus 325 ~gid~~ev~~~l~ 337 (598)
.|+|..++.+++.
T Consensus 196 ~Gl~~~~l~~v~~ 208 (459)
T PRK09287 196 LGLSAEEIADVFA 208 (459)
T ss_pred cCCCHHHHHHHHH
Confidence 9999999999994
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-15 Score=153.40 Aligned_cols=248 Identities=12% Similarity=0.058 Sum_probs=161.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|+|||+|.||.+||..|+. +|++|++||++++..+...+.. +..++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~---------------------------~G~~V~v~d~~~~~~~~~~~~~----~~~l~ 50 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFAR---------------------------AGHEVRLWDADPAAAAAAPAYI----AGRLE 50 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHH---------------------------CCCeeEEEeCCHHHHHHHHHHH----HHHHH
Confidence 4689999999999999999999 8999999999998887654210 00011
Q ss_pred HHHh---------hhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 85 EVVK---------KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 85 ~~~~---------~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.+.. .....++++++++.+++++||+|+.|+|.+. ......++.+.+..+++. ++.+
T Consensus 51 ~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~-ii~s 116 (308)
T PRK06129 51 DLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHA-ILAS 116 (308)
T ss_pred HHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcc-eEEE
Confidence 1100 0011357889999889999999999987642 123445566666555554 4455
Q ss_pred cCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 156 STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
||.+. ...+++. .+.. .+.
T Consensus 117 sts~~-~~~~la~-------------------------------------------------------~~~~-----~~~ 135 (308)
T PRK06129 117 STSAL-LASAFTE-------------------------------------------------------HLAG-----RER 135 (308)
T ss_pred eCCCC-CHHHHHH-------------------------------------------------------hcCC-----ccc
Confidence 66544 3333432 1111 112
Q ss_pred eEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 236 QILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 236 ~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
.++..|.. +.... |-..++++... .+++++.++++++.++. .+++++..+.+. +++|+ ..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~t--~~~~~~~~~~~~~~lG~-~~v~v~~~~~G~---i~nrl----~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPWT--APATLARAEALYRAAGQ-SPVRLRREIDGF---VLNRL----QGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEecCCCccH---HHHHH----HHHHH
Confidence 34444432 11111 11235664332 24688999999999984 567776555553 45554 44788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHcCCccc-----ccccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 316 NSLSAVCEATGADVSEVAKAVGLDSRI-----GAKFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 316 nE~~~la~~~gid~~ev~~~l~~~~ri-----~~~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+|+..++++.++|++++.+++...... |+..+ .+++||-...+.||.+...+.+++.+.+
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 999999999999999999999765432 22111 2346677788899999999999988864
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=160.24 Aligned_cols=254 Identities=14% Similarity=0.084 Sum_probs=168.5
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~ 82 (598)
.+|||+|||+|.||.++|..|++ +||+|++|++++++.+.+++. ....+.++
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~---------------------------~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g 55 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAAS---------------------------KGVPVRLWARRPEFAAALAAERENREYLPG 55 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHhCcccccCCC
Confidence 35799999999999999999999 899999999999999888852 22222222
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC-CchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST-VPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST-v~~~ 161 (598)
. ....++..++++.++++++|+||+|||.. .++++ .+.++++.+++..|| +.+.
T Consensus 56 ~------~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~---------------~~~~v----~~~l~~~~~vi~~~~Gi~~~ 110 (328)
T PRK14618 56 V------ALPAELYPTADPEEALAGADFAVVAVPSK---------------ALRET----LAGLPRALGYVSCAKGLAPD 110 (328)
T ss_pred C------cCCCCeEEeCCHHHHHcCCCEEEEECchH---------------HHHHH----HHhcCcCCEEEEEeeccccC
Confidence 1 01123667788888899999999998764 23333 355677888888888 5655
Q ss_pred H--HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEE
Q psy11160 162 A--AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILS 239 (598)
Q Consensus 162 ~--~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~ 239 (598)
+ .+.+.. .+.+.. ...+.+..
T Consensus 111 ~~~~~~l~~-------------------------------------------------------~l~~~~--~~~~~~~~ 133 (328)
T PRK14618 111 GGRLSELAR-------------------------------------------------------VLEFLT--QARVAVLS 133 (328)
T ss_pred CCccchHHH-------------------------------------------------------HHHHhc--CCCeEEEE
Confidence 3 333332 111100 00122333
Q ss_pred CCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceE--------EecC---------chhHHHHHH
Q psy11160 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHI--------LTTN---------TWSSELSKL 302 (598)
Q Consensus 240 ~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v--------~~~~---------~~~Ae~~Kl 302 (598)
.|............. .++.|++. +.++.++++|+..+- ... .++. .+.+..+|+
T Consensus 134 gP~~a~~~~~~~~~~---~~~~~~~~-----~~~~~v~~ll~~~~~-~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~ 204 (328)
T PRK14618 134 GPNHAEEIARFLPAA---TVVASPEP-----GLARRVQAAFSGPSF-RVYTSRDRVGVELGGALKNVIALAAGMVDGLKL 204 (328)
T ss_pred CccHHHHHHcCCCeE---EEEEeCCH-----HHHHHHHHHhCCCcE-EEEecCCccchhhhHHHHHHHHHHHHHHHHhCC
Confidence 443322111100111 25566653 578889999987652 222 1333 477889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCC-------cccccc------ccc------cCccccccchhhhHH
Q psy11160 303 AANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD-------SRIGAK------FLQ------ASVGFGGSCFQKDIL 363 (598)
Q Consensus 303 ~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~-------~ri~~~------~l~------~~~gfgg~cl~KD~~ 363 (598)
.+|+..+.....++|+..++++.|+|++.+.++++.. ++.+.+ +.. ..++|......||+.
T Consensus 205 ~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~ 284 (328)
T PRK14618 205 GDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK 284 (328)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH
Confidence 9999999999999999999999999999999987741 111111 111 123455667889999
Q ss_pred HHHHHHHHcCCh
Q psy11160 364 NLVYICECLNLP 375 (598)
Q Consensus 364 ~L~~~a~~~G~~ 375 (598)
.+.+++++.|++
T Consensus 285 ~~~~la~~~~~~ 296 (328)
T PRK14618 285 ALDAWAKAHGHD 296 (328)
T ss_pred HHHHHHHHhCCC
Confidence 999999999986
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-14 Score=150.03 Aligned_cols=246 Identities=14% Similarity=0.080 Sum_probs=162.2
Q ss_pred ceEEEECCC--------------------hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAG--------------------YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G--------------------~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|||.|.|+| |-|.+||..|++ +||+|++||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~---------------------------aG~~V~v~Dr~~ 53 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAE---------------------------AGHDVVLAEPNR 53 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHh---------------------------CCCeEEEEECCH
Confidence 589999998 468999999999 899999999998
Q ss_pred HHHH-----HHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH
Q psy11160 66 ERIR-----QWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR 140 (598)
Q Consensus 66 ~~~~-----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~ 140 (598)
++.+ .+.+ .+++.++++.+++++||+||+|+|.+. .++++++
T Consensus 54 ~~l~~~~~~~l~~-------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~--------------~v~~Vl~ 100 (342)
T PRK12557 54 SILSEELWKKVED-------------------AGVKVVSDDAEAAKHGEIHILFTPFGK--------------KTVEIAK 100 (342)
T ss_pred HHhhHHHHHHHHH-------------------CCCEEeCCHHHHHhCCCEEEEECCCcH--------------HHHHHHH
Confidence 8543 2221 246677888888999999999987542 3678888
Q ss_pred HHHHHcCCCcEEEEecCCchHHH-HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhh
Q psy11160 141 MIAEIATDNKIVVEKSTVPVRAA-ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219 (598)
Q Consensus 141 ~i~~~~~~~~ivv~~STv~~~~~-~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~ 219 (598)
.+.+.++++++|++.||+++... +.+.+.++.. .+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~---------------------------~~~---------------- 137 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELRTK---------------------------RKD---------------- 137 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhccc---------------------------ccc----------------
Confidence 99999999999999999999877 4444321000 000
Q ss_pred hHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCC---CchhHHHHHHHHHHHhcccCCceEEecCchh
Q psy11160 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEE---TPEGYAAIESLSWVYEHWIPRKHILTTNTWS 296 (598)
Q Consensus 220 ~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~---~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~ 296 (598)
.| +...+ |-.. .|..-... .++.|+.. ....++++++++++++.++. +++.++.+.
T Consensus 138 -----------~g--i~~~~-p~~v-~Gae~g~l----~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~--~v~~~~~g~ 196 (342)
T PRK12557 138 -----------VG--ISSMH-PAAV-PGTPQHGH----YVIAGKTTNGTELATEEQIEKCVELAESIGK--EPYVVPADV 196 (342)
T ss_pred -----------cC--eeecC-Cccc-cccccchh----eEEeCCCcccccCCCHHHHHHHHHHHHHcCC--EEEEeCHHH
Confidence 00 10000 1110 11100011 24444411 01123678999999999973 445566799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 297 SELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 297 Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+..+|+++|++.++.++...|...++++.+.++.++++-+-...-.+..-+--.-|+.|-.=.-|+..|...|+.+.+.
T Consensus 197 ~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (342)
T PRK12557 197 VSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLL 275 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcc
Confidence 9999999999999999999999999999999999998866532211110010011222222223566777777776654
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=145.44 Aligned_cols=232 Identities=16% Similarity=0.172 Sum_probs=148.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..|||+|||+|.||.+||..|++ +||+|++|++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~---------------------------~G~~V~~~~r~~~----------------- 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASA---------------------------NGHRVRVWSRRSG----------------- 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHH---------------------------CCCEEEEEeCCCC-----------------
Confidence 35799999999999999999999 8999999999742
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEecC-CchH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-ATDNKIVVEKST-VPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ivv~~ST-v~~~ 161 (598)
.++.++++++|+||+|+|++ .++++++.+.+. ++++++|+..|+ +.|.
T Consensus 39 ---------------~~~~~~~~~advvi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 39 ---------------LSLAAVLADADVIVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPE 88 (308)
T ss_pred ---------------CCHHHHHhcCCEEEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCC
Confidence 24566788999999999753 467777888764 677888888776 6665
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+.+.+.. .+..+.. +..+..+..|
T Consensus 89 ~~~~~s~---------------------------~~~~~~~-----------------------------~~~v~~i~gp 112 (308)
T PRK14619 89 TTRTPSQ---------------------------IWQAAFP-----------------------------NHPVVVLSGP 112 (308)
T ss_pred CCcCHHH---------------------------HHHHHcC-----------------------------CCceEEEECC
Confidence 5433322 1111110 0111223344
Q ss_pred cccCcCchhhhcCCCC-EEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-----------------chhHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNAD-RILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-----------------TWSSELSKLA 303 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~-rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-----------------~~~Ae~~Kl~ 303 (598)
....+ +.. ..|. .++.|++. ++.+.++++|+.+.- ..+..++ .+.++.+|+.
T Consensus 113 ~~a~e---i~~-~~~~~~~~ag~~~-----~~~~~v~~ll~~~~~-~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~ 182 (308)
T PRK14619 113 NLSKE---IQQ-GLPAATVVASRDL-----AAAETVQQIFSSERF-RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLG 182 (308)
T ss_pred CcHHH---Hhc-CCCeEEEEEeCCH-----HHHHHHHHHhCCCcE-EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 32110 000 0011 35556543 578889999987641 2222222 2224445588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc-cc-ccccc--ccCccccccch----------------hhhHH
Q psy11160 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS-RI-GAKFL--QASVGFGGSCF----------------QKDIL 363 (598)
Q Consensus 304 ~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~-ri-~~~~l--~~~~gfgg~cl----------------~KD~~ 363 (598)
+|...+.....++|+..+++++|+|+..+.++..... .. ....+ ++.+||-..-. .||+.
T Consensus 183 ~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~ 262 (308)
T PRK14619 183 TNAKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTAN 262 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHH
Confidence 9999999999999999999999999998877432110 00 00010 12234333333 78999
Q ss_pred HHHHHHHHcCCh
Q psy11160 364 NLVYICECLNLP 375 (598)
Q Consensus 364 ~L~~~a~~~G~~ 375 (598)
.+.+++++.|++
T Consensus 263 ~~~~~~~~~~~~ 274 (308)
T PRK14619 263 VLVQLAQQQNIA 274 (308)
T ss_pred HHHHHHHHcCCC
Confidence 999999999876
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-13 Score=149.73 Aligned_cols=210 Identities=19% Similarity=0.173 Sum_probs=139.6
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-------C
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-------K 75 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-------~ 75 (598)
.+++||+|||+|.||.+||..|+. +|++|++||+++++.+.+.+. .
T Consensus 2 ~~i~kIavIG~G~MG~~iA~~la~---------------------------~G~~V~v~D~~~~~~~~~~~~~~~~~~~~ 54 (495)
T PRK07531 2 TMIMKAACIGGGVIGGGWAARFLL---------------------------AGIDVAVFDPHPEAERIIGEVLANAERAY 54 (495)
T ss_pred CCcCEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 446799999999999999999999 899999999999998765421 0
Q ss_pred CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 76 LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 76 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
..+....+ . ..+++++++++.+++++||+||.|+|... + ....++..+.+.++++. ++.+
T Consensus 55 ~~l~~~~~---~---~~g~i~~~~~~~ea~~~aD~Vieavpe~~-----------~--vk~~l~~~l~~~~~~~~-iI~S 114 (495)
T PRK07531 55 AMLTDAPL---P---PEGRLTFCASLAEAVAGADWIQESVPERL-----------D--LKRRVLAEIDAAARPDA-LIGS 114 (495)
T ss_pred hhhccchh---h---hhhceEeeCCHHHHhcCCCEEEEcCcCCH-----------H--HHHHHHHHHHhhCCCCc-EEEE
Confidence 00000000 0 01347888999889999999999997653 1 22345567777777765 5677
Q ss_pred cCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 156 STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
||..+..+ .++. .+.. ++ -
T Consensus 115 sTsgi~~s-~l~~-------------------------------~~~~---------------------------~~--r 133 (495)
T PRK07531 115 STSGFLPS-DLQE-------------------------------GMTH---------------------------PE--R 133 (495)
T ss_pred cCCCCCHH-HHHh-------------------------------hcCC---------------------------cc--e
Confidence 77766544 2222 1111 11 1
Q ss_pred eEEECC---cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHH
Q psy11160 236 QILSNP---EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRI 312 (598)
Q Consensus 236 ~l~~~P---e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~i 312 (598)
.++..| .... |-..++||... .+++++.++++|+.++. .+++++ |.+.|.+....+
T Consensus 134 ~~~~hP~nP~~~~----------~Lvevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~--------k~~~gfi~nrl~ 192 (495)
T PRK07531 134 LFVAHPYNPVYLL----------PLVELVGGGKT--SPETIRRAKEILREIGM-KPVHIA--------KEIDAFVGDRLL 192 (495)
T ss_pred EEEEecCCCcccC----------ceEEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeec--------CCCcchhHHHHH
Confidence 122233 3221 11356677642 24688999999999984 555554 455555544444
Q ss_pred HH-HHHHHHHHHHcCCCHHHHHHHHcCCcc
Q psy11160 313 SS-INSLSAVCEATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 313 a~-~nE~~~la~~~gid~~ev~~~l~~~~r 341 (598)
.. ++|+..++++.|++++++-+++.....
T Consensus 193 ~a~~~EA~~L~~~g~~s~~~id~~~~~g~g 222 (495)
T PRK07531 193 EALWREALWLVKDGIATTEEIDDVIRYSFG 222 (495)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhhccC
Confidence 44 599999999999999999999987653
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=143.15 Aligned_cols=212 Identities=20% Similarity=0.234 Sum_probs=139.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|+|||+|.||.++|..|++ +|++|++||+++++++.+++...++.+++.+
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~---------------------------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~ 53 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAV---------------------------SGFQTTLVDIKQEQLESAQQEIASIFEQGVA 53 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHh---------------------------CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999 8999999999999999876542222211110
Q ss_pred -----HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecCC
Q psy11160 85 -----EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKSTV 158 (598)
Q Consensus 85 -----~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~STv 158 (598)
+.-......+++.++++.+++++||+||+|+|++. ..-..++.++.+.+++++++ +++||+
T Consensus 54 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~il~~~tSt~ 120 (288)
T PRK09260 54 RGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPEKL-------------ELKKAVFETADAHAPAECYIATNTSTM 120 (288)
T ss_pred cCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 00000112457888999889999999999998653 12345667788889999866 789999
Q ss_pred chHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEE
Q psy11160 159 PVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL 238 (598)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~ 238 (598)
+|....+... ... .-...++.
T Consensus 121 ~~~~l~~~~~----------------------------------------------------------~~~-r~~g~h~~ 141 (288)
T PRK09260 121 SPTEIASFTK----------------------------------------------------------RPE-RVIAMHFF 141 (288)
T ss_pred CHHHHHhhcC----------------------------------------------------------Ccc-cEEEEecC
Confidence 9966432211 000 00123444
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
+|.... |-..|+||... .+++++.++++++.++. .++++++ ++- +.| .+...+.||
T Consensus 142 -~Pv~~~----------~Lve~v~g~~t--~~~~~~~~~~~l~~lg~-~~v~v~d~~Gf------~~n---Rl~~~~~~e 198 (288)
T PRK09260 142 -NPVHKM----------KLVELIRGLET--SDETVQVAKEVAEQMGK-ETVVVNEFPGF------VTS---RISALVGNE 198 (288)
T ss_pred -CCcccC----------ceEEEeCCCCC--CHHHHHHHHHHHHHcCC-eEEEecCcccH------HHH---HHHHHHHHH
Confidence 676432 11356777432 23689999999999984 5666654 332 223 233457789
Q ss_pred HHHHHHHcCCCHHHHHHHHcC
Q psy11160 318 LSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l~~ 338 (598)
...+.+.--.+++++=.++..
T Consensus 199 a~~~~~~gv~~~~~iD~~~~~ 219 (288)
T PRK09260 199 AFYMLQEGVATAEDIDKAIRL 219 (288)
T ss_pred HHHHHHcCCCCHHHHHHHHHh
Confidence 988887654677776666643
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-13 Score=141.71 Aligned_cols=269 Identities=18% Similarity=0.197 Sum_probs=159.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCC-CCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPI-YEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~-~e~~~ 83 (598)
+|||+|||+|.||.++|..|++ +|++|++||+++. .+.+++....+ .+++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~---------------------------~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~ 53 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAA---------------------------AGADVTLIGRARI-GDELRAHGLTLTDYRGR 53 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHh---------------------------cCCcEEEEecHHH-HHHHHhcCceeecCCCc
Confidence 3789999999999999999999 8999999999764 46666533222 22221
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+.. ....++++++++ +++.++|+||+||+++. +.++++.+.+.++++++|+.. +...+..
T Consensus 54 ~~~---~~~~~~~~~~~~-~~~~~~D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~ 113 (341)
T PRK08229 54 DVR---VPPSAIAFSTDP-AALATADLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNA 113 (341)
T ss_pred cee---cccceeEeccCh-hhccCCCEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcH
Confidence 110 011345667777 47889999999997652 456778888888888876654 3445554
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.+.. .+....+ +...+|.+. ..
T Consensus 114 ~~l~~-------------------------------~~~~~~~--~~g~~~~~~------------------------~~ 136 (341)
T PRK08229 114 DVLRA-------------------------------ALPGATV--LAGMVPFNV------------------------IS 136 (341)
T ss_pred HHHHH-------------------------------hCCCCcE--EEEEEEEEE------------------------Ee
Confidence 44433 1111111 111111110 01
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHH------------
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQR------------ 311 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~------------ 311 (598)
..+|...+.... ++.+|.. ..++.+.++|+..+. .....++...++..|++.|++..+.
T Consensus 137 ~~pg~~~~~~~g--~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~ 207 (341)
T PRK08229 137 RGPGAFHQGTSG--ALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELA 207 (341)
T ss_pred cCCceEEecCCC--ceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhc
Confidence 111221111111 2334422 245778888887652 4556788999999999999754444
Q ss_pred --------HHHHHHHHHHHHHcCCCHHHHHHHHcCCc--------c----ccccccccCccccccchhhhHH--------
Q psy11160 312 --------ISSINSLSAVCEATGADVSEVAKAVGLDS--------R----IGAKFLQASVGFGGSCFQKDIL-------- 363 (598)
Q Consensus 312 --------ia~~nE~~~la~~~gid~~ev~~~l~~~~--------r----i~~~~l~~~~gfgg~cl~KD~~-------- 363 (598)
...+.|...++++.|+++..+.++..... . +.......... ....+.+|+.
T Consensus 208 ~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~ 286 (341)
T PRK08229 208 QRSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEID 286 (341)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHH
Confidence 37789999999999998655432222110 0 00001111111 1357999999
Q ss_pred ----HHHHHHHHcCChh-HHHHHHHHHHHH
Q psy11160 364 ----NLVYICECLNLPE-VASYWQQLYESL 388 (598)
Q Consensus 364 ----~L~~~a~~~G~~~-~~~~~~~~i~~~ 388 (598)
++.+.|+++|++. ..+.+.++++..
T Consensus 287 ~i~G~i~~~a~~~gv~~P~~~~~~~~~~~~ 316 (341)
T PRK08229 287 WINGEIVRLAGRLGAPAPVNARLCALVHEA 316 (341)
T ss_pred HHhhHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 7999999999862 333333444443
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=127.64 Aligned_cols=208 Identities=15% Similarity=0.191 Sum_probs=153.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+.||||.||..|+..|.+ .||+|++||+|++.++.+..-.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~---------------------------~ghdvV~yD~n~~av~~~~~~g---------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLD---------------------------GGHDVVGYDVNQTAVEELKDEG---------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHh---------------------------CCCeEEEEcCCHHHHHHHHhcC----------
Confidence 689999999999999999999 8999999999999999988421
Q ss_pred HHhhhcCCceEEecCHHH---HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKS---AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~---~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+..+++.+ -+...-.|-++||.-. .+.++++++++.+..+.+||+-.......
T Consensus 44 ---------a~~a~sl~el~~~L~~pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~D 100 (300)
T COG1023 44 ---------ATGAASLDELVAKLSAPRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKD 100 (300)
T ss_pred ---------CccccCHHHHHHhcCCCcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHH
Confidence 112222222 2345578999997642 46788999999999999999876665554
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+.+-.+ .+.+ .+++++++--
T Consensus 101 s~rr~~-------------------------------------------------------~l~~-----kgi~flD~GT 120 (300)
T COG1023 101 SLRRAK-------------------------------------------------------LLAE-----KGIHFLDVGT 120 (300)
T ss_pred HHHHHH-------------------------------------------------------HHHh-----cCCeEEeccC
Confidence 432221 2333 2345565422
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC--ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR--KHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~--~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
....-.+..+ + -+|+||++ ++++++.|+|..+.+. .-.++|+.+++..+|.++|-.-...++..+|-..
T Consensus 121 SGG~~G~~~G-~---~lMiGG~~-----~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfe 191 (300)
T COG1023 121 SGGVWGAERG-Y---CLMIGGDE-----EAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFE 191 (300)
T ss_pred CCCchhhhcC-c---eEEecCcH-----HHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHH
Confidence 2111112222 3 37899976 6899999999998752 3456889999999999999999999999999998
Q ss_pred HHHHc--CCCHHHHHHHHcCCccc
Q psy11160 321 VCEAT--GADVSEVAKAVGLDSRI 342 (598)
Q Consensus 321 la~~~--gid~~ev~~~l~~~~ri 342 (598)
+.+.. ++|..+|.++-++.+-|
T Consensus 192 lL~~s~fD~D~~~VA~vW~hGSVI 215 (300)
T COG1023 192 LLKNSPFDYDLEAVAEVWNHGSVI 215 (300)
T ss_pred HHHhCCCCCCHHHHHHHHhCcchH
Confidence 88774 78899999999887754
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=134.13 Aligned_cols=219 Identities=21% Similarity=0.300 Sum_probs=156.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~~ 83 (598)
++||+|||.|.||+++|..|++ +||+|.+|.++++.+++++.. .++-|.|+.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~---------------------------ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i 53 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR---------------------------NGHEVRLWGRDEEIVAEINETRENPKYLPGI 53 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh---------------------------cCCeeEEEecCHHHHHHHHhcCcCccccCCc
Confidence 3799999999999999999999 899999999999999999975 466666654
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC-CchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST-VPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST-v~~~~ 162 (598)
. .+.++++++|+.+++++||+|++.||+. .++++++++.+++++++++|..|- +.+++
T Consensus 54 ~------lp~~l~at~Dl~~a~~~ad~iv~avPs~---------------~~r~v~~~l~~~l~~~~~iv~~sKGie~~t 112 (329)
T COG0240 54 L------LPPNLKATTDLAEALDGADIIVIAVPSQ---------------ALREVLRQLKPLLLKDAIIVSATKGLEPET 112 (329)
T ss_pred c------CCcccccccCHHHHHhcCCEEEEECChH---------------HHHHHHHHHhhhccCCCeEEEEeccccCCC
Confidence 2 3467999999999999999999999764 688999999888999988887665 34444
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
.+. +.+++++.+. +..+.+++.|.
T Consensus 113 ~~l-------------------------------------------------------~seii~e~l~-~~~~~vLSGPs 136 (329)
T COG0240 113 GRL-------------------------------------------------------LSEIIEEELP-DNPIAVLSGPS 136 (329)
T ss_pred cch-------------------------------------------------------HHHHHHHHcC-CCeEEEEECcc
Confidence 322 2234444331 22367888887
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe-cCch-----------------hHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT-TNTW-----------------SSELSKLAA 304 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~-~~~~-----------------~Ae~~Kl~~ 304 (598)
+..+ -....|.-+++++.+. +..+.++.+|.. +.=+++. .+.. .++-+.+-+
T Consensus 137 ~A~E----Va~g~pta~~vas~d~----~~a~~v~~~f~~--~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~ 206 (329)
T COG0240 137 FAKE----VAQGLPTAVVVASNDQ----EAAEKVQALFSS--PYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGD 206 (329)
T ss_pred HHHH----HhcCCCcEEEEecCCH----HHHHHHHHHhCC--CcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 7532 1123466777877664 455666666653 0012222 1221 234455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHc
Q psy11160 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 305 N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~ 337 (598)
|+-.+..--..+|+.++...+|.++..+.-+.+
T Consensus 207 NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG 239 (329)
T COG0240 207 NAKAALITRGLAEMTRLGVALGAKPETFMGLSG 239 (329)
T ss_pred hHHHHHHHhHHHHHHHHHHHhCCCcchhccccc
Confidence 777788888899999999999999775554443
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-12 Score=140.77 Aligned_cols=205 Identities=18% Similarity=0.167 Sum_probs=138.7
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH----------
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN---------- 72 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~---------- 72 (598)
..+++|+|||+|.||..||.+|+. +|++|++||++++.++...
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~---------------------------aG~~V~l~D~~~e~l~~~~~~i~~~l~~~ 57 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQ---------------------------AGHTVLLYDARAGAAAAARDGIAARLAKL 57 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999 8999999999999988742
Q ss_pred --cCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHH-HHHHHHHHHcCCC
Q psy11160 73 --SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVE-AAARMIAEIATDN 149 (598)
Q Consensus 73 --~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 149 (598)
+|.. .+...+.. -.+++.+++++ ++++||+||.||+.+. .++ .++..+.+..+++
T Consensus 58 ~~~G~~--~~~~~~~~-----~~~i~~~~~~~-~~~~aDlViEav~E~~--------------~vK~~vf~~l~~~~~~~ 115 (507)
T PRK08268 58 VEKGKL--TAEQADAA-----LARLRPVEALA-DLADCDLVVEAIVERL--------------DVKQALFAQLEAIVSPD 115 (507)
T ss_pred HHcCCC--CHHHHHHH-----HhCeEEeCCHH-HhCCCCEEEEcCcccH--------------HHHHHHHHHHHhhCCCC
Confidence 2211 11111111 14588899996 5789999999997653 233 3456777778889
Q ss_pred cEE-EEecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhc
Q psy11160 150 KIV-VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKAN 228 (598)
Q Consensus 150 ~iv-v~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~ 228 (598)
+++ .++||+++.. ++.. +..+
T Consensus 116 ailasntStl~i~~---la~~-------------------------------------------------------~~~p 137 (507)
T PRK08268 116 CILATNTSSLSITA---IAAA-------------------------------------------------------LKHP 137 (507)
T ss_pred cEEEECCCCCCHHH---HHhh-------------------------------------------------------cCCc
Confidence 888 5899999953 3321 0000
Q ss_pred ccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHH
Q psy11160 229 HKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAF 307 (598)
Q Consensus 229 ~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~ 307 (598)
- .-.+.++.. |.-.. +-..+++|... .+++++.+.++++.+++ .++++++ ++ ++.|-+
T Consensus 138 ~-r~~G~hff~-Pa~v~----------~LvEvv~g~~T--s~~~~~~~~~l~~~lgk-~pv~v~d~pG------fi~Nrl 196 (507)
T PRK08268 138 E-RVAGLHFFN-PVPLM----------KLVEVVSGLAT--DPAVADALYALARAWGK-TPVRAKDTPG------FIVNRA 196 (507)
T ss_pred c-cEEEEeecC-CcccC----------eeEEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCCCC------hHHHHH
Confidence 0 001123322 22111 11355666432 24788999999999984 5677764 45 344444
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 308 LAQRISSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 308 ~~~~ia~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
.. .+.+|...++++.+++++++-+++..
T Consensus 197 l~---~~~~Ea~~l~~~g~~~~~~iD~al~~ 224 (507)
T PRK08268 197 AR---PYYTEALRVLEEGVADPATIDAILRE 224 (507)
T ss_pred HH---HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 43 48899999999999999999999965
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-11 Score=136.53 Aligned_cols=213 Identities=17% Similarity=0.156 Sum_probs=137.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC----CCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK----LPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~~~~ 79 (598)
.++||+|||+|.||..||.+|+. +||+|++||++++.++...+.. ....
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~---------------------------aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~ 56 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAAS---------------------------AGHQVLLYDIRAEALARAIAGIEARLNSLV 56 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999 8999999999999987642210 0000
Q ss_pred CCC-hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-EecC
Q psy11160 80 EPG-LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV-EKST 157 (598)
Q Consensus 80 e~~-~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv-~~ST 157 (598)
+.| +.+.-......+++.+++++ ++++||+||.|||.+. ..-+.++..+.+.+++++|+. ++||
T Consensus 57 ~~G~~~~~~~~~~~~~i~~~~~~~-~l~~aDlVIEav~E~~-------------~vK~~vf~~l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 57 TKGKLTAEECERTLKRLIPVTDLH-ALADAGLVIEAIVENL-------------EVKKALFAQLEELCPADTIIASNTSS 122 (503)
T ss_pred hcCCCCHHHHHHHHhccEEeCCHH-HhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 111 00000001124578899996 5789999999997653 122345677888888888765 6777
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeE
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQI 237 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l 237 (598)
+++.. ++.. +..+.+ -...++
T Consensus 123 l~i~~---iA~~-------------------------------------------------------~~~p~r-~~G~HF 143 (503)
T TIGR02279 123 LSITA---IAAG-------------------------------------------------------LARPER-VAGLHF 143 (503)
T ss_pred CCHHH---HHHh-------------------------------------------------------cCcccc-eEEEec
Confidence 77742 2220 100000 011222
Q ss_pred EECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHH
Q psy11160 238 LSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 238 ~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
. +|.-.. +-..+++|... .+++++.+.++++.+++ .++++++ ++. +.|+++. .+.+
T Consensus 144 f-~Papv~----------~LvEvv~g~~T--s~e~~~~~~~l~~~lgk-~pv~v~d~pGf-----i~Nrl~~----~~~~ 200 (503)
T TIGR02279 144 F-NPAPVM----------ALVEVVSGLAT--AAEVAEQLYETALAWGK-QPVHCHSTPGF-----IVNRVAR----PYYA 200 (503)
T ss_pred c-CccccC----------ceEEEeCCCCC--CHHHHHHHHHHHHHcCC-eeeEeCCCCCc-----HHHHHHH----HHHH
Confidence 2 221111 11345677443 34789999999999984 5676764 442 4454443 5889
Q ss_pred HHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 317 SLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~~ 339 (598)
|...+.++.+++++++-+++...
T Consensus 201 EA~~l~e~g~a~~~~ID~al~~~ 223 (503)
T TIGR02279 201 EALRALEEQVAAPAVLDAALRDG 223 (503)
T ss_pred HHHHHHHcCCCCHHHHHHHHHhc
Confidence 99999999999999999999753
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-12 Score=130.86 Aligned_cols=212 Identities=15% Similarity=0.195 Sum_probs=134.1
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC---CCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK---LPI 78 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~---~~~ 78 (598)
|+.+++|+|||+|.||.++|..|+. .|++|++||+++++++.+++.. ...
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~---------------------------~g~~V~~~d~~~~~~~~~~~~~~~~~~~ 53 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFAR---------------------------KGLQVVLIDVMEGALERARGVIERALGV 53 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999 8999999999999988876421 000
Q ss_pred -CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 -YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 -~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.+.+..+ ....++++++++.+++++||+||+|||.+. .....++..+.+.++++++|+ ++|
T Consensus 54 ~~~~~~~~----~~~~~i~~~~~~~~~~~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~t 115 (311)
T PRK06130 54 YAPLGIAS----AGMGRIRMEAGLAAAVSGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNT 115 (311)
T ss_pred hhhcccHH----HHhhceEEeCCHHHHhccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECC
Confidence 0001100 011346788888888999999999997642 134556777777777776654 444
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcC-CceEEEeccccchhhhhHHHHHhhcccCCceee
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATD-NKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 236 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~-~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~ 236 (598)
.... ..+++. .+.. ..++ + .+
T Consensus 116 sg~~-~~~l~~-------------------------------~~~~~~~~i------------------------g--~h 137 (311)
T PRK06130 116 SGLP-ITAIAQ-------------------------------AVTRPERFV------------------------G--TH 137 (311)
T ss_pred CCCC-HHHHHh-------------------------------hcCCcccEE------------------------E--Ec
Confidence 3332 223322 1100 0000 0 11
Q ss_pred EEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC--chhHHHHHHHHHHHHHHHHHH
Q psy11160 237 ILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN--TWSSELSKLAANAFLAQRISS 314 (598)
Q Consensus 237 l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~--~~~Ae~~Kl~~N~~~~~~ia~ 314 (598)
.. .|....+ + ..++.+... .+++++.+.++++.++. .++.++. ++. +++|++. .+
T Consensus 138 ~~-~p~~~~~------l----~~i~~g~~t--~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~-----i~nr~~~----~~ 194 (311)
T PRK06130 138 FF-TPADVIP------L----VEVVRGDKT--SPQTVATTMALLRSIGK-RPVLVKKDIPGF-----IANRIQH----AL 194 (311)
T ss_pred cC-CCCccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEEcCCCCCc-----HHHHHHH----HH
Confidence 11 1211110 1 123344321 23688999999999973 4555543 333 6777644 67
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 315 INSLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 315 ~nE~~~la~~~gid~~ev~~~l~~~ 339 (598)
++|...++++.++|++++-+++...
T Consensus 195 ~~Ea~~l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 195 AREAISLLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 8999999999999999999999643
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.2e-11 Score=123.11 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=86.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC---CCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK---LPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~---~~~~e~ 81 (598)
++||+|||+|.||.++|..|+. +|++|++||++++.++.+++.. .+.+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~ 55 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAF---------------------------HGFDVTIYDISDEALEKAKERIAKLADRYVR 55 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHh---------------------------cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999 8999999999999888765421 010000
Q ss_pred C--hHHHH-hhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecC
Q psy11160 82 G--LDEVV-KKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKST 157 (598)
Q Consensus 82 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~ST 157 (598)
. +..-- ......+++.++|+++++++||+||+|+|++. ....++++++.+.+++++++ ...||
T Consensus 56 ~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 56 DLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred cCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECccc
Confidence 0 00000 00012468889999989999999999998642 34567788899999988888 57777
Q ss_pred CchHH
Q psy11160 158 VPVRA 162 (598)
Q Consensus 158 v~~~~ 162 (598)
.++..
T Consensus 123 ~~~~~ 127 (287)
T PRK08293 123 LLPSQ 127 (287)
T ss_pred CCHHH
Confidence 76643
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-10 Score=117.65 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=84.7
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC------
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN------ 74 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~------ 74 (598)
|++.+.||+|||+|.||..+|..|+. +|++|++||++++.++...+.
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~---------------------------~G~~V~l~d~~~~~~~~~~~~i~~~~~ 53 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCAR---------------------------AGVDVLVFETTEELATAGRNRIEKSLE 53 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHHHHHHHH
Confidence 67778899999999999999999999 899999999999998862211
Q ss_pred ----CCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHc-CCC
Q psy11160 75 ----KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIA-TDN 149 (598)
Q Consensus 75 ----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 149 (598)
...+.+...+.. ..+++.++|+ +++++||+||.|||... +.=...+..+.+.. +++
T Consensus 54 ~~~~~g~~~~~~~~~~-----~~~l~~~~~~-~~~~~~d~ViEav~E~~-------------~~K~~l~~~l~~~~~~~~ 114 (286)
T PRK07819 54 RAVSRGKLTERERDAA-----LARLRFTTDL-GDFADRQLVIEAVVEDE-------------AVKTEIFAELDKVVTDPD 114 (286)
T ss_pred HHHhcccCChhhHHHH-----HhCeEeeCCH-HHhCCCCEEEEecccCH-------------HHHHHHHHHHHHhhCCCC
Confidence 001111111111 2468889999 47899999999997643 22234567777777 789
Q ss_pred cEEEEecCCchHHH
Q psy11160 150 KIVVEKSTVPVRAA 163 (598)
Q Consensus 150 ~ivv~~STv~~~~~ 163 (598)
++++..||..|-+.
T Consensus 115 ~il~snTS~~~~~~ 128 (286)
T PRK07819 115 AVLASNTSSIPIMK 128 (286)
T ss_pred cEEEECCCCCCHHH
Confidence 98887766655443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-11 Score=123.35 Aligned_cols=210 Identities=14% Similarity=0.208 Sum_probs=130.4
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
..++||+|||+|.||.++|..|+. .|++|++||+++++++...+... ..
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~~~----~~ 50 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAA---------------------------AGMDVWLLDSDPAALSRGLDSIS----SS 50 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHh---------------------------cCCeEEEEeCCHHHHHHHHHHHH----HH
Confidence 346789999999999999999999 89999999999998764321100 00
Q ss_pred hHHHHhh---------hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 83 LDEVVKK---------TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 83 ~~~~~~~---------~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
++.+.+. .....+.++++++ ++++||+||+||+.+. .....++.++.+.++++++|+
T Consensus 51 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~aD~Vieav~e~~-------------~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 51 LARLVKKGKMSQEEADATLGRIRCTTNLE-ELRDADFIIEAIVESE-------------DLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred HHHHHHcCCCCHHHHHHHHhceEeeCCHH-HhCCCCEEEEcCccCH-------------HHHHHHHHHHHhhCCCCcEEE
Confidence 0011100 0013466777775 7899999999997643 234456777888899998875
Q ss_pred -EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCC
Q psy11160 154 -EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTN 232 (598)
Q Consensus 154 -~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g 232 (598)
+.||+++.+..+... ... .-
T Consensus 117 s~tS~i~~~~l~~~~~----------------------------------------------------------~~~-r~ 137 (295)
T PLN02545 117 SNTSSISITRLASATQ----------------------------------------------------------RPQ-QV 137 (295)
T ss_pred ECCCCCCHHHHHhhcC----------------------------------------------------------CCc-ce
Confidence 788887765432211 000 00
Q ss_pred ceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHH
Q psy11160 233 VQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRI 312 (598)
Q Consensus 233 ~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~i 312 (598)
...++...|... + + ..++++... .+++++.++++++.++. .++++++.. + .++++++.
T Consensus 138 ~g~h~~~pp~~~-~------l----veiv~g~~t--~~e~~~~~~~ll~~lG~-~~~~~~d~~-g---~i~nri~~---- 195 (295)
T PLN02545 138 IGMHFMNPPPIM-K------L----VEIIRGADT--SDEVFDATKALAERFGK-TVVCSQDYP-G---FIVNRILM---- 195 (295)
T ss_pred EEEeccCCcccC-c------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeEEecCcc-c---HHHHHHHH----
Confidence 112233333221 1 1 123444321 24678999999999874 455554421 1 34444433
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 313 SSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 313 a~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
.++||...+.+.--.+++++=.++..
T Consensus 196 ~~~~ea~~~~~~gv~~~~~iD~~~~~ 221 (295)
T PLN02545 196 PMINEAFYALYTGVASKEDIDTGMKL 221 (295)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46789999888877888777776643
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=124.29 Aligned_cols=187 Identities=15% Similarity=0.116 Sum_probs=123.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.++|..|++ +|++|++||++++..+.+.+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~---------------------------~g~~V~~~d~~~~~~~~a~~~g~--------- 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRS---------------------------LGHTVYGVSRRESTCERAIERGL--------- 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHCCC---------
Confidence 489999999999999999999 89999999999999887764210
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
....+++. +++++||+||+|+|.+ .+.++++.+.+.++++++|++.+++.+...+.
T Consensus 45 --------~~~~~~~~-~~~~~aDlVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~ 100 (279)
T PRK07417 45 --------VDEASTDL-SLLKDCDLVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEA 100 (279)
T ss_pred --------cccccCCH-hHhcCCCEEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHH
Confidence 01233444 4688999999998753 45667888999999999999999988766543
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
+... .. .| +..-|-++.
T Consensus 101 ~~~~-------------------------------~~-------------------------------~~-v~~HPm~G~ 117 (279)
T PRK07417 101 WEKL-------------------------------HP-------------------------------RF-VGSHPMAGT 117 (279)
T ss_pred HHHh-------------------------------hC-------------------------------Cc-eeeCCcCCC
Confidence 3220 00 00 111122221
Q ss_pred c----Cchhhh-cCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 246 E----GTAMTD-LFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSL 318 (598)
Q Consensus 246 ~----G~a~~~-~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~ 318 (598)
+ ..+..+ +.....+++-+.. ..+++++.++++++.++. .++.++..+..+.++++++....+..++++.+
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l~p~~~--~~~~~~~~v~~l~~~lG~-~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVLTPTEN--TDLNALAIVEELAVSLGS-KIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEEccCCC--CCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 1 111111 2222333332221 123678889999999873 45567778899999999988776665554433
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-11 Score=122.68 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=130.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC---------
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK--------- 75 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~--------- 75 (598)
++||+|||+|.||.++|..|+. +|++|++||+++++++.+.+..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~---------------------------~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~ 56 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL---------------------------AGYDVLLNDVSADRLEAGLATINGNLARQVA 56 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999 8999999999999887643210
Q ss_pred -CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-
Q psy11160 76 -LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV- 153 (598)
Q Consensus 76 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv- 153 (598)
..+.+...+.. ..+++.+++++ ++++||+||+|||.+. .....++++|.+.++++++++
T Consensus 57 ~g~~~~~~~~~~-----~~~i~~~~~~~-~~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 57 KGKISEEARAAA-----LARISTATDLE-DLADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred cCCCCHHHHHHH-----HhCeEeeCCHH-HhcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEE
Confidence 01111111111 13578888885 6899999999997643 133456778889999999886
Q ss_pred EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCc
Q psy11160 154 EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNV 233 (598)
Q Consensus 154 ~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~ 233 (598)
.+||+++. .++.. +.... .=.
T Consensus 118 ~ts~~~~s---~la~~-------------------------------------------------------~~~~~-r~~ 138 (292)
T PRK07530 118 NTSSISIT---RLASA-------------------------------------------------------TDRPE-RFI 138 (292)
T ss_pred cCCCCCHH---HHHhh-------------------------------------------------------cCCcc-cEE
Confidence 67777653 23320 10000 000
Q ss_pred eeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHH
Q psy11160 234 QFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRIS 313 (598)
Q Consensus 234 ~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia 313 (598)
..++.. |....++. + ++.|... .+++++.+.++++.++. .++++.+.. .+++++++. .
T Consensus 139 g~h~~~-p~~~~~~v--------e-i~~g~~t---~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nRl~~----~ 196 (292)
T PRK07530 139 GIHFMN-PVPVMKLV--------E-LIRGIAT---DEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNRILL----P 196 (292)
T ss_pred EeeccC-CcccCceE--------E-EeCCCCC---CHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHHHHH----H
Confidence 122222 32222211 1 3333221 23688999999999874 556565433 677777665 4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHc
Q psy11160 314 SINSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 314 ~~nE~~~la~~~gid~~ev~~~l~ 337 (598)
+.||...+.+.--.++.++=+++.
T Consensus 197 ~~~ea~~~~~~g~~~~~~iD~~~~ 220 (292)
T PRK07530 197 MINEAIYTLYEGVGSVEAIDTAMK 220 (292)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 678888877774456777766664
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=118.44 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=128.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.||.++|..|.+ .|+ +|++||+++++.+.+.+...
T Consensus 1 m~I~iIG~G~mG~sla~~l~~---------------------------~g~~~~v~~~d~~~~~~~~~~~~g~------- 46 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKE---------------------------KGLISKVYGYDHNELHLKKALELGL------- 46 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHh---------------------------cCCCCEEEEEcCCHHHHHHHHHCCC-------
Confidence 489999999999999999998 564 89999999999887653210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
...++++.++. +||+||+|||.. .+.++++++.+ ++++++|+..+|+.....
T Consensus 47 -----------~~~~~~~~~~~-~aD~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~ 98 (275)
T PRK08507 47 -----------VDEIVSFEELK-KCDVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAKII 98 (275)
T ss_pred -----------CcccCCHHHHh-cCCEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHHHH
Confidence 11233555544 599999998754 36667788888 889999998777655444
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC-Cc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN-PE 242 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~-Pe 242 (598)
+.+.. .. .. .++.+ |.
T Consensus 99 ~~~~~-------------------------------~~-~~-------------------------------~~v~~hPm 115 (275)
T PRK08507 99 ESVPK-------------------------------HI-RK-------------------------------NFIAAHPM 115 (275)
T ss_pred HHHHH-------------------------------hc-CC-------------------------------CEEecCCc
Confidence 33221 00 00 01111 32
Q ss_pred ccC----cCchhhhcCC-CCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLS----EGTAMTDLFN-ADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 243 ~~~----~G~a~~~~~~-p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
.++ +..+..+++. -..+++++... .++.++.++++++.++. .++.++..+..+.+++++++-..+..++++-
T Consensus 116 aG~e~~Gp~~a~~~l~~g~~~il~~~~~~--~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~ 192 (275)
T PRK08507 116 AGTENSGPKAAIKGLYEGKVVVLCDVEKS--GEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANT 192 (275)
T ss_pred CcCchhhHHhccHHHhCCCeEEEecCCCC--CHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 211 1122111111 11244443221 23578889999999973 5666777888999999999877544444332
Q ss_pred HHHHHHHcCCCHHHHHHHHcCCcc
Q psy11160 318 LSAVCEATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l~~~~r 341 (598)
+ . .+.+..++.++....+|
T Consensus 193 ~---~--~~~~~~~~~~~~~~gfr 211 (275)
T PRK08507 193 V---L--KEEDERNIFDLAGGGFR 211 (275)
T ss_pred H---H--hcCChHHHHhhcccchh
Confidence 2 1 26677777777766554
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=123.57 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=139.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC-CCCC-
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP-IYEP- 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~-~~e~- 81 (598)
.+|||+|||+|.||+.+|..|++ +| +|++|.++++.++.+++...+ .+.+
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~---------------------------~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~ 57 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICAR---------------------------RG-PTLQWVRSAETADDINDNHRNSRYLGN 57 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH---------------------------CC-CEEEEeCCHHHHHHHHhcCCCcccCCC
Confidence 46899999999999999999999 77 689999999999999975432 2222
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-EecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV-EKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv-~~STv~~ 160 (598)
+. ....++.+++|+.++++++|+||++||+. .++++++.|.+.++++++++ ..-.+..
T Consensus 58 ~~------~l~~~i~~t~d~~~a~~~aDlVilavps~---------------~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 58 DV------VLSDTLRATTDFAEAANCADVVVMGVPSH---------------GFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred Cc------ccCCCeEEECCHHHHHhcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 11 01245788999988899999999998753 58889999999998876544 3345555
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
++.+.+.. .+++.+ .+..+.++..
T Consensus 117 ~t~~~~se-------------------------------------------------------~i~~~l-~~~~~~~l~G 140 (341)
T PRK12439 117 GTNMRMSQ-------------------------------------------------------IIEEVL-PGHPAGILAG 140 (341)
T ss_pred CCCCcHHH-------------------------------------------------------HHHHHc-CCCCeEEEEC
Confidence 44322221 222211 1122345666
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEE-ecCchhHHHHHHHHHHHH-----------
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHIL-TTNTWSSELSKLAANAFL----------- 308 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~-~~~~~~Ae~~Kl~~N~~~----------- 308 (598)
|.+..+. ....|..+++|+.+. +..+.++.+|..-. =++. ..+....|..|.+-|.+.
T Consensus 141 P~~a~ev----~~g~~t~~via~~~~----~~~~~v~~lf~~~~--~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~ 210 (341)
T PRK12439 141 PNIAREV----AEGYAAAAVLAMPDQ----HLATRLSPLFRTRR--FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGI 210 (341)
T ss_pred CCHHHHH----HcCCCeEEEEEeCCH----HHHHHHHHHhCCCC--EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6554321 112344456666542 45567777776421 1233 345666777777776554
Q ss_pred ------HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy11160 309 ------AQRISSINSLSAVCEATGADVSEVAKAV 336 (598)
Q Consensus 309 ------~~~ia~~nE~~~la~~~gid~~ev~~~l 336 (598)
+.....++|+..+++.+|.++..+..+.
T Consensus 211 g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~ 244 (341)
T PRK12439 211 GENTRAMVIARALREMTKLGVAMGGNPETFAGLA 244 (341)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 3334556777777777777666665543
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-10 Score=116.14 Aligned_cols=211 Identities=15% Similarity=0.121 Sum_probs=125.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++||+|||+|.||.++|..|+. .|++|++||+++++++...+....- .-+++
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~---------------------------~G~~V~l~d~~~~~l~~~~~~i~~~-~~~l~ 54 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFAR---------------------------TGYDVTIVDVSEEILKNAMELIESG-PYGLR 54 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHh---------------------------cCCeEEEEeCCHHHHHHHHHHHHhh-hhhHH
Confidence 5789999999999999999999 8999999999999987543210000 00111
Q ss_pred HHHhh---------hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 85 EVVKK---------TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 85 ~~~~~---------~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.++.+ ....++.+++++ +++++||+||+|+|.+. ....++++++.+.++++++++ +
T Consensus 55 ~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~-S 119 (291)
T PRK06035 55 NLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIA-S 119 (291)
T ss_pred HHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEE-E
Confidence 11110 011346778887 57899999999997653 234567778888888888765 3
Q ss_pred cCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 156 STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
+|... ...+++. . +....+ =...
T Consensus 120 ~tsg~-~~~~la~-------------------------------~------------------------~~~~~r-~ig~ 142 (291)
T PRK06035 120 NTSGI-MIAEIAT-------------------------------A------------------------LERKDR-FIGM 142 (291)
T ss_pred cCCCC-CHHHHHh-------------------------------h------------------------cCCccc-EEEE
Confidence 33322 2222322 1 100000 0001
Q ss_pred eEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 236 QILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 236 ~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
+. +.|....++ .| ++.|... .+++++.+.++++.++. .++++++....-..|+..| ++
T Consensus 143 hf-~~P~~~~~~--------vE-v~~g~~T---~~e~~~~~~~~~~~lgk-~~v~v~d~pgfv~nRl~~~--------~~ 200 (291)
T PRK06035 143 HW-FNPAPVMKL--------IE-VVRAALT---SEETFNTTVELSKKIGK-IPIEVADVPGFFTTRFIEG--------WL 200 (291)
T ss_pred ec-CCCcccCcc--------EE-EeCCCCC---CHHHHHHHHHHHHHcCC-eEEEeCCCCCeeHHHHHHH--------HH
Confidence 11 122222211 12 3334332 34788999999999874 5666776655556666665 44
Q ss_pred HHHHHHHHHcCCCHHHHHHHHc
Q psy11160 316 NSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 316 nE~~~la~~~gid~~ev~~~l~ 337 (598)
||+..+.+.--++++++=+++.
T Consensus 201 ~ea~~~~~~g~a~~~~iD~~~~ 222 (291)
T PRK06035 201 LEAIRSFEIGIATIKDIDEMCK 222 (291)
T ss_pred HHHHHHHHcCCCCHHHHHHHHh
Confidence 6777777664467777766664
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-10 Score=117.38 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=74.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||..+|..|++ +|++|+++++ +++++.+++....+.+++.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~---------------------------~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~ 52 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE---------------------------AGRDVTFLVR-PKRAKALRERGLVIRSDHGDA 52 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH---------------------------CCCceEEEec-HHHHHHHHhCCeEEEeCCCeE
Confidence 589999999999999999999 8999999999 888888886433332222110
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
. .....+++..++...+|+||+|++++ .++++++.+.+.+.++++|+.
T Consensus 53 ~------~~~~~~~~~~~~~~~~d~vilavk~~---------------~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 53 V------VPGPVITDPEELTGPFDLVILAVKAY---------------QLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred E------ecceeecCHHHccCCCCEEEEEeccc---------------CHHHHHHHHHhhcCCCCEEEE
Confidence 0 01234566666668999999999875 267788888888888876664
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-10 Score=123.56 Aligned_cols=205 Identities=17% Similarity=0.203 Sum_probs=132.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+|+||| +|.||.++|..|.. .|++|++||+++++...+...
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~---------------------------~G~~V~v~~r~~~~~~~~a~~---------- 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE---------------------------KGFEVIVTGRDPKKGKEVAKE---------- 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH---------------------------CCCEEEEEECChHHHHHHHHH----------
Confidence 5899997 89999999999999 899999999998886554421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+...+++..+++.+||+||+|+|.. .+.++++++.+.++++++|++.|++.+...+
T Consensus 44 --------~gv~~~~~~~e~~~~aDvVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~ 100 (437)
T PRK08655 44 --------LGVEYANDNIDAAKDADIVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVE 100 (437)
T ss_pred --------cCCeeccCHHHHhccCCEEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHH
Confidence 12345677778899999999998653 4567788999999999999999988776665
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC-Ccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN-PEF 243 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~-Pe~ 243 (598)
.+.. .+. .+ ..++.+ |.+
T Consensus 101 ~l~~-------------------------------------------------------~~~----~~--~~~V~~HPma 119 (437)
T PRK08655 101 AMEE-------------------------------------------------------YAP----EG--VEILPTHPMF 119 (437)
T ss_pred HHHH-------------------------------------------------------hcC----CC--CEEEEcCCCC
Confidence 4432 110 11 122332 544
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
+.....+. ....++..+.. ..+++++.++++++.++ .++...++. +.-+++.+......+.+...+.. ..
T Consensus 120 Gp~~~~~~---g~~~il~p~~~--~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~-l~ 189 (437)
T PRK08655 120 GPRTPSLK---GQVVILTPTEK--RSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIAST-LK 189 (437)
T ss_pred CCCCcccC---CCEEEEecCCC--CCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 32111121 11234443331 12357788999999886 344444432 44555555555555555554444 36
Q ss_pred HcCCCHHHHHHHHcCCcc
Q psy11160 324 ATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~r 341 (598)
++|.+..+..++....+|
T Consensus 190 ~~g~~~~~~~~~a~~~fr 207 (437)
T PRK08655 190 RLGVDIKESRKFASPIYE 207 (437)
T ss_pred HcCCCHHHHHhhcChhhH
Confidence 679998887766654443
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=117.25 Aligned_cols=102 Identities=26% Similarity=0.421 Sum_probs=82.9
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~~ 85 (598)
||+|||+|.+|.++|..|++ +|++|++|.++++.++.+++ +..+.+.|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~---------------------------~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~-- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD---------------------------NGHEVTLWGRDEEQIEEINETRQNPKYLPGI-- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH---------------------------CTEEEEEETSCHHHHHHHHHHTSETTTSTTS--
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------cCCEEEEEeccHHHHHHHHHhCCCCCCCCCc--
Confidence 79999999999999999999 89999999999999999996 3444444442
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
..+.++.+++|+++++++||+||++||+. .+++++++|.++++++++++..+
T Consensus 52 ----~l~~~i~~t~dl~~a~~~ad~IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 52 ----KLPENIKATTDLEEALEDADIIIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp ----BEETTEEEESSHHHHHTT-SEEEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS
T ss_pred ----ccCcccccccCHHHHhCcccEEEecccHH---------------HHHHHHHHHhhccCCCCEEEEec
Confidence 12357899999999999999999998765 47889999999999999888644
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-10 Score=116.41 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=75.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc----eEEEE-eCCHHHHHHHHcCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI----QVTVV-DKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~e 80 (598)
|||+|||+|.||.+||..|.+ .|+ +|++| |+++++.+.+.+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~---------------------------~g~~~~~~i~v~~~r~~~~~~~~~~~------ 47 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVA---------------------------SGVVPPSRISTADDSNPARRDVFQSL------ 47 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHH---------------------------CCCCCcceEEEEeCCCHHHHHHHHHc------
Confidence 689999999999999999999 677 89999 9999998876531
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe-cCCc
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK-STVP 159 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~-STv~ 159 (598)
++..++++.+++++||+||+|++ |. .++++++.+.+.++++++||.. ++++
T Consensus 48 -------------g~~~~~~~~e~~~~aDvVil~v~-~~--------------~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 48 -------------GVKTAASNTEVVKSSDVIILAVK-PQ--------------VVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred -------------CCEEeCChHHHHhcCCEEEEEEC-cH--------------HHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 24556777788899999999994 42 4777888888888888876632 4444
Q ss_pred hHH
Q psy11160 160 VRA 162 (598)
Q Consensus 160 ~~~ 162 (598)
..+
T Consensus 100 ~~~ 102 (266)
T PLN02688 100 LAD 102 (266)
T ss_pred HHH
Confidence 433
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-10 Score=116.66 Aligned_cols=210 Identities=16% Similarity=0.164 Sum_probs=133.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|+|||+|.||..+|..|+. .|++|++||++++..+.+.+... ..++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~---------------------------aG~~V~l~D~~~~~~~~~~~~i~----~~~~ 55 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA---------------------------HGLDVVAWDPAPGAEAALRANVA----NAWP 55 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHH----HHHH
Confidence 5789999999999999999999 89999999999988765432100 0011
Q ss_pred HHHh-----hhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 85 EVVK-----KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~-----~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.+.+ .....++++++++++++++||+|+.|||... ++ =...+++|.+.+++++ |+.+||.+
T Consensus 56 ~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l-----------~v--K~~lf~~l~~~~~~~a-IlaSnTS~ 121 (321)
T PRK07066 56 ALERQGLAPGASPARLRFVATIEACVADADFIQESAPERE-----------AL--KLELHERISRAAKPDA-IIASSTSG 121 (321)
T ss_pred HHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCH-----------HH--HHHHHHHHHHhCCCCe-EEEECCCc
Confidence 1110 0112467888999889999999999997643 22 2456688999999888 55566664
Q ss_pred hHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhc-CCceEEEeccccchhhhhHHHHHhhcccCCceeeEE
Q psy11160 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIAT-DNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL 238 (598)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~-~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~ 238 (598)
.-.+ +++. .++ +..++ |. + -
T Consensus 122 l~~s-~la~-------------------------------~~~~p~R~~------------------------g~--H-f 142 (321)
T PRK07066 122 LLPT-DFYA-------------------------------RATHPERCV------------------------VG--H-P 142 (321)
T ss_pred cCHH-HHHH-------------------------------hcCCcccEE------------------------EE--e-c
Confidence 3222 2221 110 00000 00 1 1
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec--CchhHHHHHHHHHHHHHHHHHHHH
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT--NTWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~--~~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
++|....+ +. | |+.|... .+++++.+..+++.++. .++.+. .++ ++.| .+..+++|
T Consensus 143 fnP~~~~p------LV--E-Vv~g~~T---~~e~~~~~~~f~~~lGk-~pV~v~kd~pG------Fi~N---Rl~~a~~~ 200 (321)
T PRK07066 143 FNPVYLLP------LV--E-VLGGERT---APEAVDAAMGIYRALGM-RPLHVRKEVPG------FIAD---RLLEALWR 200 (321)
T ss_pred CCccccCc------eE--E-EeCCCCC---CHHHHHHHHHHHHHcCC-EeEecCCCCcc------HHHH---HHHHHHHH
Confidence 24433222 11 1 4444333 35788999999999874 455552 233 2333 34456889
Q ss_pred HHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 317 SLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~~~ 340 (598)
|+..+.+...++++++=+++....
T Consensus 201 EA~~lv~eGvas~edID~a~~~g~ 224 (321)
T PRK07066 201 EALHLVNEGVATTGEIDDAIRFGA 224 (321)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCC
Confidence 999999998899999888876554
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-10 Score=116.42 Aligned_cols=102 Identities=19% Similarity=0.326 Sum_probs=79.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCH-HHHHHHHcCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSE-ERIRQWNSNKLPIY 79 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~-~~~~~~~~~~~~~~ 79 (598)
.|||+|||+|.||.+|+..|.+ +| ++|+++|+++ ++.+.+...
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~---------------------------~g~~~~~~v~v~~r~~~~~~~~l~~~----- 50 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLH---------------------------ANVVKGEQITVSNRSNETRLQELHQK----- 50 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHH---------------------------CCCCCcceEEEECCCCHHHHHHHHHh-----
Confidence 3699999999999999999998 44 8999999975 466766531
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe-cCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK-STV 158 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~-STv 158 (598)
.+.+.+.++.+++++||+||+||+.. .+.++++.+.+.++++++||.. +++
T Consensus 51 -------------~g~~~~~~~~e~~~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 51 -------------YGVKGTHNKKELLTDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred -------------cCceEeCCHHHHHhcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 12345677777889999999999743 3566778888888888888875 999
Q ss_pred chHHHHHH
Q psy11160 159 PVRAAESI 166 (598)
Q Consensus 159 ~~~~~~~~ 166 (598)
++.+.+++
T Consensus 103 ~~~~l~~~ 110 (279)
T PRK07679 103 STHSIRNL 110 (279)
T ss_pred CHHHHHHH
Confidence 88876543
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-08 Score=116.87 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=72.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..|.+ .|++|++||++.... ...+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~---------------------------~G~~V~~~dr~~~~~-~A~~----------- 92 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLIS---------------------------QGHTVLAHSRSDHSL-AARS----------- 92 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHH-HHHH-----------
Confidence 4799999999999999999999 789999999986542 2221
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHH-HHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIA-EIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ivv~~STv~~~~ 162 (598)
-++..++++.+.+ .+||+||+|||.. .+.++++++. +.++++++|++.+++-...
T Consensus 93 --------~Gv~~~~d~~e~~~~~aDvViLavP~~---------------~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~ 149 (667)
T PLN02712 93 --------LGVSFFLDPHDLCERHPDVILLCTSII---------------STENVLKSLPLQRLKRNTLFVDVLSVKEFA 149 (667)
T ss_pred --------cCCEEeCCHHHHhhcCCCEEEEcCCHH---------------HHHHHHHhhhhhcCCCCeEEEECCCCcHHH
Confidence 1234466777644 5699999998632 4677777775 5688899999988776533
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-12 Score=113.95 Aligned_cols=42 Identities=48% Similarity=0.771 Sum_probs=34.5
Q ss_pred EEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCCCC
Q psy11160 553 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594 (598)
Q Consensus 553 ~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~~~ 594 (598)
+|||+|||+||+|+|+||++.|++.|.++|++|.+|||++..
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~ 42 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDE 42 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHH
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccCh
Confidence 699999999999999999999999999999999999999864
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-09 Score=115.41 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=79.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~~e~~~~ 84 (598)
|||+|||+|.||..+|..|++ +|++|++|+++++.++.+++.. ...+.++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~---------------------------~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~- 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSS---------------------------KKISVNLWGRNHTTFESINTKRKNLKYLPTC- 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEecCHHHHHHHHHcCCCcccCCCC-
Confidence 589999999999999999999 8999999999999999998642 22222221
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH-HcCCCcEE-EEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE-IATDNKIV-VEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~iv-v~~STv 158 (598)
....++++++++.+++ .++|+||++||.. .+.++++.+.+ .+.+++.| .....+
T Consensus 53 -----~~~~~i~~~~~~~~~~~~~~Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 53 -----HLPDNISVKSAIDEVLSDNATCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -----cCCCCeEEeCCHHHHHhCCCCEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 0123577888888776 5899999998754 57888899988 87777644 443334
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=123.27 Aligned_cols=227 Identities=14% Similarity=0.125 Sum_probs=142.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-----HHHHHHc-CCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-----RIRQWNS-NKLPI 78 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-----~~~~~~~-~~~~~ 78 (598)
.+||+|||.|.||+++|..|+++.- +..+ -||+|.+|.++++ .++.+|+ +.++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~-------~~~~-------------~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ 70 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQ-------RNYI-------------FHNEVRMWVLEEIVEGEKLSDIINTKHENVK 70 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC-------cccC-------------CCCeEEEEEecccccchHHHHHHHhcCCCcc
Confidence 4799999999999999999999100 0000 1489999999987 4888885 45666
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH--HcCCCcEEEEec
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE--IATDNKIVVEKS 156 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~ivv~~S 156 (598)
|.|++. .+.++.+++|+.+++++||+||++||+. .++++++++.+ .++++.++|..+
T Consensus 71 ylp~~~------Lp~ni~~tsdl~eav~~aDiIvlAVPsq---------------~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 71 YLPGIK------LPDNIVAVSDLKEAVEDADLLIFVIPHQ---------------FLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred cCCCCc------CCCceEEecCHHHHHhcCCEEEEEcChH---------------HHHHHHHHhccccccCCCCEEEEEe
Confidence 777763 2467999999999999999999999764 57888899888 777776666433
Q ss_pred C-CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 157 T-VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 157 T-v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
- +.+.+-+ ...+.+++++.+ +..+
T Consensus 130 KGIe~~t~~-----------------------------------------------------~~~~sevi~e~l--~~~~ 154 (365)
T PTZ00345 130 KGIIVENGK-----------------------------------------------------PVLCSDVIEEEL--GIPC 154 (365)
T ss_pred CCcccCCCC-----------------------------------------------------cccHHHHHHHHh--CCCe
Confidence 2 2211110 000112233222 1235
Q ss_pred eEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec-Cch-----------------hH
Q psy11160 236 QILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT-NTW-----------------SS 297 (598)
Q Consensus 236 ~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~-~~~-----------------~A 297 (598)
.+++.|-+..+ - ....|..+++++.+. +..+.++.+|..= .=+++.. +.. .+
T Consensus 155 ~~LsGPs~A~E--v--a~~~pt~~vias~~~----~~a~~~~~lf~~~--~frvy~s~Dv~GvEl~galKNviAIa~Gi~ 224 (365)
T PTZ00345 155 CALSGANVAND--V--AREEFSEATIGCEDK----DDALIWQRLFDRP--YFKINCVPDVIGVEVCGALKNIIALAAGFC 224 (365)
T ss_pred EEEECCCHHHH--H--HcCCCcEEEEEeCCH----HHHHHHHHHhCCC--cEEEEEcCCcccchhhHHHHHHHHHHHHHH
Confidence 66778866432 1 123466677777653 4556667776521 0122221 221 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHc
Q psy11160 298 ELSKLAANAFLAQRISSINSLSAVCEATGA--DVSEVAKAVG 337 (598)
Q Consensus 298 e~~Kl~~N~~~~~~ia~~nE~~~la~~~gi--d~~ev~~~l~ 337 (598)
+-+++-.|+-.+..-..++|+..+++.+|. +...+..+.+
T Consensus 225 dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG 266 (365)
T PTZ00345 225 DGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCG 266 (365)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccch
Confidence 334455677777777788899999998864 6666665443
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=121.55 Aligned_cols=101 Identities=16% Similarity=0.241 Sum_probs=83.4
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--------ceEEEEeC-----CHHHHHHHHc
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--------IQVTVVDK-----SEERIRQWNS 73 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~v~~~d~-----~~~~~~~~~~ 73 (598)
||+|||+|.||.++|..|++ +| ++|++|.+ +++..+.+++
T Consensus 1 kI~VIGaG~wGtALA~~la~---------------------------ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~ 53 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE---------------------------NARALPELFEESVRMWVFEEEIEGRNLTEIINT 53 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------cCCcccccCCceEEEEEeccccCCHHHHHHHHh
Confidence 69999999999999999999 67 99999999 7788888886
Q ss_pred CC-CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE
Q psy11160 74 NK-LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152 (598)
Q Consensus 74 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv 152 (598)
.. .+.|.|++. .+.++++++|+++++++||+||++||+. .++++++.+.+++++++++
T Consensus 54 ~~~n~~ylpgi~------Lp~~i~at~dl~eal~~ADiIIlAVPs~---------------~i~~vl~~l~~~l~~~~~i 112 (342)
T TIGR03376 54 THENVKYLPGIK------LPANLVAVPDLVEAAKGADILVFVIPHQ---------------FLEGICKQLKGHVKPNARA 112 (342)
T ss_pred cCCCccccCCCc------CCCCeEEECCHHHHHhcCCEEEEECChH---------------HHHHHHHHHHhhcCCCCEE
Confidence 43 455556642 2357899999999999999999998764 5888899999999888877
Q ss_pred EEe
Q psy11160 153 VEK 155 (598)
Q Consensus 153 v~~ 155 (598)
|..
T Consensus 113 Vs~ 115 (342)
T TIGR03376 113 ISC 115 (342)
T ss_pred EEE
Confidence 653
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=112.32 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=77.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++||+|||+|+||.++|..|+. .|++|+++|+++++++...+.. +..++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~---------------------------~g~~V~~~d~~~~~~~~~~~~i----~~~l~ 51 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAV---------------------------AGYDVVMVDISDAAVDRGLATI----TKSLD 51 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHH---------------------------CCCceEEEeCCHHHHHHHHHHH----HHHHH
Confidence 4689999999999999999999 8999999999999986422100 00111
Q ss_pred HHHhh---------hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 85 EVVKK---------TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 85 ~~~~~---------~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.+.+. ....+++++++++ .+++||+||+|+|... ..-.++++.|.+.++++++| .+
T Consensus 52 ~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e~~-------------~~k~~~~~~l~~~~~~~~il-~s 116 (282)
T PRK05808 52 RLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATENM-------------DLKKKIFAQLDEIAKPEAIL-AT 116 (282)
T ss_pred HHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccccH-------------HHHHHHHHHHHhhCCCCcEE-EE
Confidence 11110 0113678888986 5899999999986432 23357888899999999887 33
Q ss_pred cCCch
Q psy11160 156 STVPV 160 (598)
Q Consensus 156 STv~~ 160 (598)
+|...
T Consensus 117 ~ts~~ 121 (282)
T PRK05808 117 NTSSL 121 (282)
T ss_pred CCCCC
Confidence 44433
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=117.51 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=149.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+.|++||||.||..+|.++++ +|+.|.+|+|+.++.+.+-++...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~---------------------------~G~~VavyNRt~~ktd~f~~~~~~-------- 48 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIAD---------------------------HGYTVAVYNRTTEKTDEFLAERAK-------- 48 (473)
T ss_pred cceeeEehhhhhHHHHHHHHh---------------------------cCceEEEEeCCHHHHHHHHHhCcc--------
Confidence 689999999999999999999 899999999999999987643210
Q ss_pred HHhhhcCCceEEecCHHH---HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC-chH
Q psy11160 86 VVKKTRDVNLFFSTDIKS---AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV-PVR 161 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~---~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv-~~~ 161 (598)
.+++..+.++++ .++..--|+++|.... .|...++++.+++.++.|+++-.-. .+.
T Consensus 49 ------~k~i~~~~sieefV~~Le~PRkI~lMVkAG~--------------~VD~~I~~L~p~Le~gDIiIDGGNs~y~D 108 (473)
T COG0362 49 ------GKNIVPAYSIEEFVASLEKPRKILLMVKAGT--------------PVDAVIEQLLPLLEKGDIIIDGGNSHYKD 108 (473)
T ss_pred ------CCCccccCcHHHHHHHhcCCceEEEEEecCC--------------cHHHHHHHHHhhcCCCCEEEeCCCcCCch
Confidence 012333333332 4566778889885431 4677889999999999999987544 344
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
|.|+.. .|.+ .|. .++..-
T Consensus 109 T~RR~~--------------------------------------------------------eL~~---~Gi--~FvG~G 127 (473)
T COG0362 109 TIRRNK--------------------------------------------------------ELSE---KGI--LFVGMG 127 (473)
T ss_pred HHHHHH--------------------------------------------------------HHHh---cCC--eEEecc
Confidence 433221 2333 232 223322
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC-----CceEEecCchhHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP-----RKHILTTNTWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~-----~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
+.+ | .+++++=|.+|+||.. ++.+.+.|+|+.+.. +...++|..+++..+|.++|-.-..-+..+.
T Consensus 128 VSG--G--EeGA~~GPSiMpGG~~-----eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIa 198 (473)
T COG0362 128 VSG--G--EEGARHGPSIMPGGQK-----EAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIA 198 (473)
T ss_pred ccc--c--ccccccCCCcCCCCCH-----HHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHH
Confidence 221 2 1334443459999976 688999999988752 1234578889999999999999999999999
Q ss_pred HHHHHHHH-cCCCHHHHHHHHc
Q psy11160 317 SLSAVCEA-TGADVSEVAKAVG 337 (598)
Q Consensus 317 E~~~la~~-~gid~~ev~~~l~ 337 (598)
|...+.+. +|+...|+.++..
T Consensus 199 E~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 199 EAYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHHhcCCCHHHHHHHHH
Confidence 99998877 8999999988886
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-10 Score=119.69 Aligned_cols=182 Identities=11% Similarity=0.194 Sum_probs=123.6
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.+++|+||| +|.||.++|..|.. .|++|++||++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~---------------------------~G~~V~~~d~~~~---------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL---------------------------SGYQVRILEQDDW---------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH---------------------------CCCeEEEeCCCcc----------------
Confidence 357899998 99999999999999 8999999998521
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+++.+++++||+||+|+|.. ...++++.+.+ ++++++|++.|++.+..
T Consensus 134 ----------------~~~~~~~~~aDlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~ 181 (374)
T PRK11199 134 ----------------DRAEDILADAGMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAP 181 (374)
T ss_pred ----------------hhHHHHHhcCCEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHH
Confidence 12345678999999998654 34666778888 89999999999987766
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
.+.+... + .+ . .+..-|-
T Consensus 182 ~~~~~~~-------------------------------------------------------~-----~~-~-fvg~HPm 199 (374)
T PRK11199 182 LQAMLAA-------------------------------------------------------H-----SG-P-VLGLHPM 199 (374)
T ss_pred HHHHHHh-------------------------------------------------------C-----CC-C-EEeeCCC
Confidence 5444320 0 00 0 1223444
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
++.+-..+.+ ...++.++.+. ++++.++++++.++. .++.++..+..+++++++.+ ..+....++..++
T Consensus 200 ~G~~~~~~~~---~~vv~~~~~~~----~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~ 268 (374)
T PRK11199 200 FGPDVGSLAK---QVVVVCDGRQP----EAYQWLLEQIQVWGA-RLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLA 268 (374)
T ss_pred CCCCCcccCC---CEEEEcCCCCc----hHHHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4332212221 11243344332 577888999999873 45556667889999999844 4555556666666
Q ss_pred HHcCCCHHHHHH
Q psy11160 323 EATGADVSEVAK 334 (598)
Q Consensus 323 ~~~gid~~ev~~ 334 (598)
+ .+.|..++.+
T Consensus 269 ~-~~~~~~~~~~ 279 (374)
T PRK11199 269 K-ENVDLEQLLA 279 (374)
T ss_pred H-cCCCHHHHHH
Confidence 6 7888877755
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.3e-10 Score=114.84 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=84.7
Q ss_pred ceEEEECCC--------------------hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAG--------------------YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G--------------------~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|||.|.|+| |-|.+||..|++ +||+|++||+++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlk---------------------------AGheV~V~Drnr 53 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAM---------------------------AGHDVVLAEPNR 53 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHH---------------------------CCCEEEEEeCCh
Confidence 689999998 458999999999 899999999998
Q ss_pred HHHH-----HHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH
Q psy11160 66 ERIR-----QWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR 140 (598)
Q Consensus 66 ~~~~-----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~ 140 (598)
++.+ .+.+ .+...++++.+++++||+||+|+|++. .++++++
T Consensus 54 sa~e~e~~e~Lae-------------------aGA~~AaS~aEAAa~ADVVIL~LPd~a--------------aV~eVl~ 100 (341)
T TIGR01724 54 EFMSDDLWKKVED-------------------AGVKVVSDDKEAAKHGEIHVLFTPFGK--------------GTFSIAR 100 (341)
T ss_pred hhhhhhhhHHHHH-------------------CCCeecCCHHHHHhCCCEEEEecCCHH--------------HHHHHHH
Confidence 7653 2332 234567788899999999999998653 4667778
Q ss_pred HHHHHcCCCcEEEEecCCchHHHHHHHH
Q psy11160 141 MIAEIATDNKIVVEKSTVPVRAAESIMN 168 (598)
Q Consensus 141 ~i~~~~~~~~ivv~~STv~~~~~~~~~~ 168 (598)
.+.+.++++++||++||++|.+...+..
T Consensus 101 GLaa~L~~GaIVID~STIsP~t~~~~~e 128 (341)
T TIGR01724 101 TIIEHVPENAVICNTCTVSPVVLYYSLE 128 (341)
T ss_pred HHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 8999999999999999999999876654
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.2e-09 Score=108.00 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=70.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---ceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---IQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+|+|+|||+|.||..++..|.+ .| ++|.+||+++++.+.+....
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~---------------------------~g~~~~~v~v~~r~~~~~~~~~~~~------ 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLA---------------------------SGVPAKDIIVSDPSPEKRAALAEEY------ 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHh---------------------------CCCCcceEEEEcCCHHHHHHHHHhc------
Confidence 4689999999999999999998 66 78999999999988776421
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
++..+.+..+.+.++|+||+|+|.. .+.++++.+.+.+ +..+|-..+.++
T Consensus 49 ------------g~~~~~~~~~~~~~advVil~v~~~---------------~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 49 ------------GVRAATDNQEAAQEADVVVLAVKPQ---------------VMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ------------CCeecCChHHHHhcCCEEEEEcCHH---------------HHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 1334567777788999999998643 4777888888776 333444444443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-08 Score=104.38 Aligned_cols=98 Identities=24% Similarity=0.341 Sum_probs=73.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||+.+|..|++ .|++|+++++++++.+.+++....+ +.+ +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~g~~~-~~~--~ 50 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQ---------------------------AGHDVTLVARRGAHLDALNENGLRL-EDG--E 50 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECChHHHHHHHHcCCcc-cCC--c
Confidence 589999999999999999999 8999999999999998888643322 100 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.......+++..+ ++.+|+||+|++++ .++++++.+.+.+.++++||.
T Consensus 51 -----~~~~~~~~~~~~~-~~~~d~vila~k~~---------------~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 51 -----ITVPVLAADDPAE-LGPQDLVILAVKAY---------------QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred -----eeecccCCCChhH-cCCCCEEEEecccc---------------cHHHHHHHHhhhcCCCCEEEE
Confidence 0012234556654 48999999998754 267788889988888766653
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=104.62 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=70.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+||+|||+|.||.+|+..|.+ .| .+|+++|+++++.+.+.+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~---------------------------~g~~~~~~I~v~~r~~~~~~~l~~~------- 48 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN---------------------------KNIVSPDQIICSDLNVSNLKNASDK------- 48 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH---------------------------CCCCCCceEEEECCCHHHHHHHHHh-------
Confidence 589999999999999999998 34 4899999999998876531
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.+...+++..+.+++||+||+||+ |. .++++++.+.+.++++++||
T Consensus 49 -----------~g~~~~~~~~e~~~~aDiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI 94 (272)
T PRK12491 49 -----------YGITITTNNNEVANSADILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV 94 (272)
T ss_pred -----------cCcEEeCCcHHHHhhCCEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE
Confidence 013456677778899999999997 42 47888888888888887665
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-08 Score=104.17 Aligned_cols=98 Identities=12% Similarity=0.269 Sum_probs=69.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc---eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI---QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|+|+|||+|.||.+++..|.+ .|+ ++.++++++++.+.+.+..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~---------------------------~g~~~~~i~v~~r~~~~~~~l~~~~------- 46 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLT---------------------------SPADVSEIIVSPRNAQIAARLAERF------- 46 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHh---------------------------CCCChheEEEECCCHHHHHHHHHHc-------
Confidence 489999999999999999998 443 5689999999988776421
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+...+.++.+++++||+||+|+| |. .+.++++.+. +.++++||. ++..-+
T Consensus 47 ----------~~~~~~~~~~~~~~~aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~ 97 (258)
T PRK06476 47 ----------PKVRIAKDNQAVVDRSDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATD 97 (258)
T ss_pred ----------CCceEeCCHHHHHHhCCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCC
Confidence 123456778878899999999987 42 3566666552 456777764 444444
Q ss_pred HHHH
Q psy11160 163 AESI 166 (598)
Q Consensus 163 ~~~~ 166 (598)
.+.+
T Consensus 98 ~~~l 101 (258)
T PRK06476 98 RAAL 101 (258)
T ss_pred HHHH
Confidence 4333
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=104.58 Aligned_cols=213 Identities=19% Similarity=0.230 Sum_probs=133.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC----CCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK----LPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~~~~ 79 (598)
.++||+|||+|.||..+|..+|. .|++|+++|++++.++...... ....
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~---------------------------~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~ 54 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFAL---------------------------AGYDVVLKDISPEALERALAYIEKNLEKLV 54 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhh---------------------------cCCceEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999 8899999999988776544211 0001
Q ss_pred CCC-hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecC
Q psy11160 80 EPG-LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKST 157 (598)
Q Consensus 80 e~~-~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~ST 157 (598)
+.| +.+.-....-.+++.++++. ++++||+||-+|+.. ++.=+++++++-+++++++|+ -+.||
T Consensus 55 ~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~-------------levK~~vf~~l~~~~~~~aIlASNTSs 120 (307)
T COG1250 55 EKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVVED-------------LELKKQVFAELEALAKPDAILASNTSS 120 (307)
T ss_pred hcCCCChhhHHHHHhhccccCchh-HhccCCEEEEecccc-------------HHHHHHHHHHHHhhcCCCcEEeeccCC
Confidence 111 11111111124678888887 899999999999653 333467889999999999988 66677
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeE
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQI 237 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l 237 (598)
+++....+-.. +| + ++ .|. |
T Consensus 121 l~it~ia~~~~---------------------------------rp---------------e---r~------iG~--H- 140 (307)
T COG1250 121 LSITELAEALK---------------------------------RP---------------E---RF------IGL--H- 140 (307)
T ss_pred CCHHHHHHHhC---------------------------------Cc---------------h---hE------EEE--e-
Confidence 77744311100 00 0 00 011 1
Q ss_pred EECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHH
Q psy11160 238 LSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 238 ~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
-+||....+ +. -|+.|-.. .+++++.+..+...+++ .++...+ ++ ++.| .+...+.+
T Consensus 141 FfNP~~~m~------LV---EvI~g~~T---~~e~~~~~~~~~~~igK-~~vv~~D~pG------Fi~N---Ril~~~~~ 198 (307)
T COG1250 141 FFNPVPLMP------LV---EVIRGEKT---SDETVERVVEFAKKIGK-TPVVVKDVPG------FIVN---RLLAALLN 198 (307)
T ss_pred ccCCCCcce------eE---EEecCCCC---CHHHHHHHHHHHHHcCC-CCEeecCCCc------eehH---hHHHHHHH
Confidence 124433221 11 14344333 35788999999999874 3343332 33 2333 33446778
Q ss_pred HHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 317 SLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~~ 339 (598)
|+..+.+.-.++++++=+++...
T Consensus 199 eA~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 199 EAIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhc
Confidence 99988888889999888888653
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=91.37 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=69.6
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---ceEEEE-eCCHHHHHHHHcCCCCCCCCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---IQVTVV-DKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~v~~~-d~~~~~~~~~~~~~~~~~e~~ 82 (598)
||+|||+|.||..++..|.. .| ++|+++ ++++++.+.+.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~---------------------------~g~~~~~v~~~~~r~~~~~~~~~~~~------- 46 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA---------------------------SGIKPHEVIIVSSRSPEKAAELAKEY------- 46 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH---------------------------TTS-GGEEEEEEESSHHHHHHHHHHC-------
T ss_pred CEEEECCCHHHHHHHHHHHH---------------------------CCCCceeEEeeccCcHHHHHHHHHhh-------
Confidence 79999999999999999999 77 899955 99999999987421
Q ss_pred hHHHHhhhcCCceEEec-CHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 83 LDEVVKKTRDVNLFFST-DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
...++. +..+++++||+||+|||.. .+.++++++ +...+++++|.
T Consensus 47 -----------~~~~~~~~~~~~~~~advvilav~p~---------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 47 -----------GVQATADDNEEAAQEADVVILAVKPQ---------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp -----------TTEEESEEHHHHHHHTSEEEE-S-GG---------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred -----------ccccccCChHHhhccCCEEEEEECHH---------------HHHHHHHHH-hhccCCCEEEE
Confidence 123444 7888999999999999643 367788888 77888898884
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-07 Score=108.69 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=83.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC---------
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN--------- 74 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~--------- 74 (598)
.+.+|+|||+|.||..+|..++. +|++|+++|++++.++.....
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 364 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSAS---------------------------KGVPVIMKDINQKALDLGMTEAAKLLNKQV 364 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999 899999999999987642211
Q ss_pred -CCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-
Q psy11160 75 -KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV- 152 (598)
Q Consensus 75 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv- 152 (598)
...+.+...+.. ..+++.++|+. ++++||+||-+||.. ++.=.+++.++.+.+++++|+
T Consensus 365 ~~g~~~~~~~~~~-----~~~i~~~~~~~-~~~~aDlViEav~E~-------------l~~K~~vf~~l~~~~~~~~ila 425 (715)
T PRK11730 365 ERGKIDGAKMAGV-----LSSIRPTLDYA-GFERVDVVVEAVVEN-------------PKVKAAVLAEVEQKVREDTILA 425 (715)
T ss_pred HcCCCChhhHHHH-----HhCeEEeCCHH-HhcCCCEEEecccCc-------------HHHHHHHHHHHHhhCCCCcEEE
Confidence 001111112222 25689999995 789999999999653 333467889999999999887
Q ss_pred EEecCCchHH
Q psy11160 153 VEKSTVPVRA 162 (598)
Q Consensus 153 v~~STv~~~~ 162 (598)
.++||.++..
T Consensus 426 sNTSsl~i~~ 435 (715)
T PRK11730 426 SNTSTISISL 435 (715)
T ss_pred EcCCCCCHHH
Confidence 5566666644
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-07 Score=98.44 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=78.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+++|+|||+|.||.++|..|++ .| ++|++||+++++.+.+.+-..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~---------------------------~g~~~~V~~~dr~~~~~~~a~~~g~------ 52 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRR---------------------------LGLAGEIVGADRSAETRARARELGL------ 52 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHh---------------------------cCCCcEEEEEECCHHHHHHHHhCCC------
Confidence 4799999999999999999998 56 489999999998887664210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
....+.++.+++++||+||+|+|.+ ...++++.+.+.++++.+|++.+++....
T Consensus 53 -----------~~~~~~~~~~~~~~aDvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~ 106 (307)
T PRK07502 53 -----------GDRVTTSAAEAVKGADLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASV 106 (307)
T ss_pred -----------CceecCCHHHHhcCCCEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHH
Confidence 1123456667889999999998754 34666778888889999998887776555
Q ss_pred HHH
Q psy11160 163 AES 165 (598)
Q Consensus 163 ~~~ 165 (598)
.+.
T Consensus 107 ~~~ 109 (307)
T PRK07502 107 IAA 109 (307)
T ss_pred HHH
Confidence 443
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.2e-08 Score=99.04 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=73.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
|+|+|||+|.||..++..|.+ .| .+|++||+++++.+.+.+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~---------------------------~g~~~~~~v~v~~r~~~~~~~~~~~~------ 47 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLE---------------------------SGAVKPSQLTITNRTPAKAYHIKERY------ 47 (273)
T ss_pred CEEEEECccHHHHHHHHHHHH---------------------------CCCCCcceEEEECCCHHHHHHHHHHc------
Confidence 489999999999999999998 55 48999999999887765310
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.+...+.+..+++.++|+||+|||.. .+.++++.+.+.++++++|+..+.
T Consensus 48 -----------~g~~~~~~~~~~~~~aDiVilav~p~---------------~~~~vl~~l~~~l~~~~~iis~~a 97 (273)
T PRK07680 48 -----------PGIHVAKTIEEVISQSDLIFICVKPL---------------DIYPLLQKLAPHLTDEHCLVSITS 97 (273)
T ss_pred -----------CCeEEECCHHHHHHhCCEEEEecCHH---------------HHHHHHHHHHhhcCCCCEEEEECC
Confidence 12456677877889999999998532 467788889888888887775543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=98.73 Aligned_cols=115 Identities=20% Similarity=0.319 Sum_probs=75.0
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC----C-CCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP----I-YEP 81 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~----~-~e~ 81 (598)
||+|||+|.||..+|..++. .|++|++||+|++.++...+.... . ...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~---------------------------~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~ 53 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR---------------------------AGYEVTLYDRSPEALERARKRIERLLDRLVRKG 53 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH---------------------------TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCHHHHHHHHHHHh---------------------------CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhc
Confidence 69999999999999999999 899999999999987654321100 0 000
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~STv~~ 160 (598)
.+.+........++++++|++++. +||+||-|+|.. ++.=++.++.+.+.+++++++ ...|+.++
T Consensus 54 ~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E~-------------l~~K~~~~~~l~~~~~~~~ilasnTSsl~i 119 (180)
T PF02737_consen 54 RLSQEEADAALARISFTTDLEEAV-DADLVIEAIPED-------------LELKQELFAELDEICPPDTILASNTSSLSI 119 (180)
T ss_dssp TTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-SS-------------HHHHHHHHHHHHCCS-TTSEEEE--SSS-H
T ss_pred cchhhhhhhhhhhcccccCHHHHh-hhheehhhcccc-------------HHHHHHHHHHHHHHhCCCceEEecCCCCCH
Confidence 111000011124689999998766 999999998653 334467889999999999987 55566666
Q ss_pred HH
Q psy11160 161 RA 162 (598)
Q Consensus 161 ~~ 162 (598)
..
T Consensus 120 ~~ 121 (180)
T PF02737_consen 120 SE 121 (180)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-07 Score=93.91 Aligned_cols=91 Identities=22% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---c-eEEEEeC-CHHHHHHHHcCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---I-QVTVVDK-SEERIRQWNSNK 75 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~-~v~~~d~-~~~~~~~~~~~~ 75 (598)
||. .+||+|||+|.||.+++..|.+ .| . +++++++ ++++.+.+.+.
T Consensus 1 ~m~-~~kI~iIG~G~mg~ala~~l~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~- 51 (245)
T PRK07634 1 MLK-KHRILFIGAGRMAEAIFSGLLK---------------------------TSKEYIEEIIVSNRSNVEKLDQLQAR- 51 (245)
T ss_pred CCC-CCeEEEECcCHHHHHHHHHHHh---------------------------CCCCCcCeEEEECCCCHHHHHHHHHH-
Confidence 564 4799999999999999999988 33 3 3778887 57787776532
Q ss_pred CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 76 LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 76 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.+...++++.++++++|+||+|+|.. .++++++++.+.++ +++||
T Consensus 52 -----------------~~~~~~~~~~~~~~~~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vi 96 (245)
T PRK07634 52 -----------------YNVSTTTDWKQHVTSVDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVV 96 (245)
T ss_pred -----------------cCcEEeCChHHHHhcCCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEE
Confidence 12345677888899999999998753 35777788877776 45544
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-08 Score=104.49 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=78.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||.++|..|.+ .|++|.+|+++++..+........+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~---------------------------~G~~v~i~~~~~~~~~~~~a~~~~~------- 46 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKA---------------------------AGPDVFIIGYDPSAAQLARALGFGV------- 46 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHh---------------------------cCCCeEEEEeCCCHHHHHHHhcCCC-------
Confidence 479999999999999999999 8899999998877655443211100
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH-HcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE-IATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~ivv~~STv~~~~~~ 164 (598)
.-..++++.+++++||+||+|||.. .+.++++++.+ .++++++|++.+++.....+
T Consensus 47 --------~~~~~~~~~~~~~~aDlVilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~ 103 (359)
T PRK06545 47 --------IDELAADLQRAAAEADLIVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILA 103 (359)
T ss_pred --------CcccccCHHHHhcCCCEEEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHH
Confidence 0123567777889999999998753 46777888887 47889999998888876664
Q ss_pred HHH
Q psy11160 165 SIM 167 (598)
Q Consensus 165 ~~~ 167 (598)
.+.
T Consensus 104 ~~~ 106 (359)
T PRK06545 104 EAE 106 (359)
T ss_pred HHH
Confidence 443
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.9e-09 Score=109.32 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=85.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|+||..+|..++. .|+ +|+++|++++..+... .++++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~---------------------------~g~~~VvlvDi~~~l~~g~a---~d~~~~~~~ 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE---------------------------KELADLVLLDVVEGIPQGKA---LDMYEASPV 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCCChhHHHH---Hhhhhhhhc
Confidence 699999999999999999999 565 8999999766433111 123333321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+. ...++++++|+++ +++||+||+++++|.++++++.+ -..|++.++++.+.|.++.++..+|+. |-|.+..
T Consensus 52 ~~----~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~--tNP~di~ 124 (305)
T TIGR01763 52 GG----FDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVV--SNPLDAM 124 (305)
T ss_pred cC----CCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHHH
Confidence 11 1246888899975 89999999999999876432111 135788999999999999765555554 4444444
Q ss_pred H
Q psy11160 164 E 164 (598)
Q Consensus 164 ~ 164 (598)
-
T Consensus 125 t 125 (305)
T TIGR01763 125 T 125 (305)
T ss_pred H
Confidence 3
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=108.45 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=82.6
Q ss_pred CCceEEEECCChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC----C
Q psy11160 4 TISHICCIGAGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP----I 78 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~----~ 78 (598)
.++||+|||+|.||..+|..++ . .|++|+++|++++.++...+.... .
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~l~~~ 360 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATK---------------------------AGLPVRIKDINPQGINHALKYSWDLLDKK 360 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHH---------------------------cCCeEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999 6 899999999999877654321000 0
Q ss_pred CCCC-hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEec
Q psy11160 79 YEPG-LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKS 156 (598)
Q Consensus 79 ~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~S 156 (598)
.+.+ +.+.-......+++.++|++ ++++||+||-+|+.. ++.=++++.++.+.+++++|+ .++|
T Consensus 361 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEav~E~-------------~~~K~~v~~~le~~~~~~~ilasnTS 426 (708)
T PRK11154 361 VKRRHLKPSERDKQMALISGTTDYR-GFKHADVVIEAVFED-------------LALKQQMVAEVEQNCAPHTIFASNTS 426 (708)
T ss_pred HHcCCCCHHHHHHHHhcEEEeCChH-HhccCCEEeeccccc-------------HHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 0000 00000011125789999994 789999999998653 334467889999999999987 4455
Q ss_pred CCchHH
Q psy11160 157 TVPVRA 162 (598)
Q Consensus 157 Tv~~~~ 162 (598)
+.++..
T Consensus 427 ~l~i~~ 432 (708)
T PRK11154 427 SLPIGQ 432 (708)
T ss_pred CCCHHH
Confidence 566644
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-07 Score=107.12 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=82.2
Q ss_pred CCceEEEECCChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCC----CC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKL----PI 78 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~----~~ 78 (598)
.++||+|||+|.||..+|..++ . .|++|+++|++++.++....... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~l~~~ 355 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATK---------------------------AGIPVRIKDINPQGINNALKYAWKLLDKG 355 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHH---------------------------cCCeEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998 5 79999999999987765432100 00
Q ss_pred CC-CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEec
Q psy11160 79 YE-PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKS 156 (598)
Q Consensus 79 ~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~S 156 (598)
.+ ..+.+--......+++.++|++ ++++||+||-+||.. ++.=.+++.++.+.+++++|+ .++|
T Consensus 356 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~adlViEav~E~-------------l~~K~~v~~~l~~~~~~~~ilasnTS 421 (699)
T TIGR02440 356 VKRRHMTPAERDNQMALITGTTDYR-GFKDVDIVIEAVFED-------------LALKHQMVKDIEQECAAHTIFASNTS 421 (699)
T ss_pred HHcCCCCHHHHHHHHcCeEEeCChH-HhccCCEEEEecccc-------------HHHHHHHHHHHHhhCCCCcEEEeCCC
Confidence 00 0000100011125788999995 789999999998653 333467889999999999887 4456
Q ss_pred CCchHH
Q psy11160 157 TVPVRA 162 (598)
Q Consensus 157 Tv~~~~ 162 (598)
|.++..
T Consensus 422 ~l~i~~ 427 (699)
T TIGR02440 422 SLPIGQ 427 (699)
T ss_pred CCCHHH
Confidence 666644
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=102.24 Aligned_cols=205 Identities=13% Similarity=0.155 Sum_probs=130.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC--------
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-------- 75 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-------- 75 (598)
.+++|+|||+|.||..+|..++. +|++|+++|++++.+++..+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~ 364 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSAS---------------------------KGTPIVMKDINQHSLDLGLTEAAKLLNKQV 364 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999 8999999999999877533210
Q ss_pred --CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-
Q psy11160 76 --LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV- 152 (598)
Q Consensus 76 --~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv- 152 (598)
..+.+...+.. ..+++.++++. ++++||+||-+|+.. ++.=++++.++.+.+++++|+
T Consensus 365 ~~g~~~~~~~~~~-----~~~i~~~~~~~-~~~~aDlViEav~E~-------------l~~K~~vf~~l~~~~~~~~ila 425 (714)
T TIGR02437 365 ERGRITPAKMAGV-----LNGITPTLSYA-GFDNVDIVVEAVVEN-------------PKVKAAVLAEVEQHVREDAILA 425 (714)
T ss_pred HcCCCChhhHHHH-----HhCeEEeCCHH-HhcCCCEEEEcCccc-------------HHHHHHHHHHHHhhCCCCcEEE
Confidence 00111111111 24688999995 789999999999653 333467889999999999987
Q ss_pred EEecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhc-CCceEEEeccccchhhhhHHHHHhhcccC
Q psy11160 153 VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIAT-DNKIVVEKSTVPVRAAESIMNVLKANHKT 231 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~-~~~lvv~eSTvP~gtt~~~~~~L~~~~~~ 231 (598)
.++||.++... +. .++ |..+ .
T Consensus 426 snTS~l~i~~i---a~-------------------------------~~~~p~r~------------------------i 447 (714)
T TIGR02437 426 SNTSTISISLL---AK-------------------------------ALKRPENF------------------------C 447 (714)
T ss_pred ECCCCCCHHHH---Hh-------------------------------hcCCcccE------------------------E
Confidence 45566666443 11 000 1000 0
Q ss_pred CceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHH
Q psy11160 232 NVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQ 310 (598)
Q Consensus 232 g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~ 310 (598)
| .|+ ++|....+ +. | |+.|... .+++++.+..++..+++ .++.+.+ ++ ++.|- +
T Consensus 448 g--~Hf-f~P~~~~~------lv--E-vv~g~~T---s~~~~~~~~~~~~~lgk-~pv~v~d~pG------fi~NR---l 502 (714)
T TIGR02437 448 G--MHF-FNPVHRMP------LV--E-VIRGEKS---SDETIATVVAYASKMGK-TPIVVNDCPG------FFVNR---V 502 (714)
T ss_pred E--Eec-CCCcccCc------eE--e-ecCCCCC---CHHHHHHHHHHHHHcCC-EEEEeCCccc------chHHH---H
Confidence 1 111 24433221 11 2 4455433 34788889999998874 5665543 22 23333 3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 311 RISSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 311 ~ia~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
...+.+|...+.+. |++++++=+++..
T Consensus 503 ~~~~~~ea~~l~~e-G~~~~~ID~a~~~ 529 (714)
T TIGR02437 503 LFPYFGGFSKLLRD-GADFVRIDKVMEK 529 (714)
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHh
Confidence 34567898888764 5899888777754
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >KOG2653|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.9e-08 Score=98.87 Aligned_cols=211 Identities=15% Similarity=0.175 Sum_probs=145.5
Q ss_pred CCCC-CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC---C
Q psy11160 1 MVQT-ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK---L 76 (598)
Q Consensus 1 m~~~-~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~---~ 76 (598)
|.|. .+.|+.|||+.||..++.+.++ +|+.|.+|+|...+++.+.++. .
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d---------------------------~Gf~v~~yNRT~skvD~flaneak~~ 53 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIAD---------------------------KGFTVCAYNRTTSKVDEFLANEAKGT 53 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccc---------------------------cCceEEEeccchHhHHHHHHHhhcCC
Confidence 5553 4789999999999999999999 8999999999999999876431 2
Q ss_pred CCC-CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 77 PIY-EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 77 ~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
++. ...+++++ .-++..-+|++.|.... .|...++++.+++.++.+||+-
T Consensus 54 ~i~ga~S~ed~v---------------~klk~PR~iillvkAG~--------------pVD~~I~~L~p~LekgDiIIDG 104 (487)
T KOG2653|consen 54 KIIGAYSLEDFV---------------SKLKKPRVIILLVKAGA--------------PVDQFIEELVPYLEKGDIIIDG 104 (487)
T ss_pred cccCCCCHHHHH---------------HhcCCCcEEEEEeeCCC--------------cHHHHHHHHHhhcCCCCEEEeC
Confidence 221 22333333 23456677777774321 3666788999999999999986
Q ss_pred cCCc-hHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCce
Q psy11160 156 STVP-VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQ 234 (598)
Q Consensus 156 STv~-~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~ 234 (598)
.... +.|.|+-- .|.+ .|
T Consensus 105 GNs~y~dT~RR~~--------------------------------------------------------el~k---~G-- 123 (487)
T KOG2653|consen 105 GNSEYQDTERRCR--------------------------------------------------------ELAK---KG-- 123 (487)
T ss_pred CcccCcchHHHHH--------------------------------------------------------HHHh---cC--
Confidence 5543 33332211 1222 12
Q ss_pred eeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC------CceEEecCchhHHHHHHHHHHHH
Q psy11160 235 FQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP------RKHILTTNTWSSELSKLAANAFL 308 (598)
Q Consensus 235 ~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~------~~~v~~~~~~~Ae~~Kl~~N~~~ 308 (598)
+-++.+-+.+ | .+++..=|.+|+||.. ++-..++++|+.+.. +....+|..+++..+|+++|-.-
T Consensus 124 ilfvG~GVSG--G--EEGAR~GPSlMpGg~~-----~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIE 194 (487)
T KOG2653|consen 124 ILFVGSGVSG--G--EEGARYGPSLMPGGSK-----EAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIE 194 (487)
T ss_pred cEEEecCccC--c--ccccccCCccCCCCCh-----HHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcc
Confidence 1122221111 1 1223333448999976 578888888887641 11345788999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHc
Q psy11160 309 AQRISSINSLSAVCEA-TGADVSEVAKAVG 337 (598)
Q Consensus 309 ~~~ia~~nE~~~la~~-~gid~~ev~~~l~ 337 (598)
..-+..+.|...+.+. .|+.-.|+.+++.
T Consensus 195 YGDMqLI~EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 195 YGDMQLICEAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred cchHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999888 8999999988886
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.6e-07 Score=92.97 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
|-...|||+|||+|.||+.+|..|++ +|++|+++.+++. +.++.....+..
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~---------------------------~g~~V~~~~r~~~--~~~~~~g~~~~~ 51 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLAR---------------------------AGFDVHFLLRSDY--EAVRENGLQVDS 51 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEEeCCH--HHHHhCCeEEEe
Confidence 43456899999999999999999999 8999999999863 344432222211
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
..-+. ......++++.+ ....+|+||+||+... +.++++.+.+.+.++.+|+
T Consensus 52 ~~~~~-----~~~~~~~~~~~~-~~~~~D~vilavK~~~---------------~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 52 VHGDF-----HLPPVQAYRSAE-DMPPCDWVLVGLKTTA---------------NALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred CCCCe-----eecCceEEcchh-hcCCCCEEEEEecCCC---------------hHhHHHHHhhhcCCCCEEE
Confidence 00000 001133444544 4678999999987652 4567778888888777655
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.4e-09 Score=93.81 Aligned_cols=96 Identities=24% Similarity=0.220 Sum_probs=66.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEE-eCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV-DKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||+|||+|.||..++..|.+ .||+|.++ .++.+..+.+.....
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~---------------------------ag~~v~~v~srs~~sa~~a~~~~~------- 55 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALAR---------------------------AGHEVVGVYSRSPASAERAAAFIG------- 55 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHH---------------------------TTSEEEEESSCHH-HHHHHHC--T-------
T ss_pred ccEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEEeCCcccccccccccc-------
Confidence 4799999999999999999999 89999886 677777777664211
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH--cCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI--ATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~ivv~~STv~~ 160 (598)
. ....++.+.+.+||++||+||.. .+.++.++|... .+++++|+.+|-.-.
T Consensus 56 ----------~-~~~~~~~~~~~~aDlv~iavpDd---------------aI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 56 ----------A-GAILDLEEILRDADLVFIAVPDD---------------AIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp ----------T------TTGGGCC-SEEEE-S-CC---------------HHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred ----------c-ccccccccccccCCEEEEEechH---------------HHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 1 12334566889999999998754 688899999887 789999999886543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=99.41 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-------HHHHHcCC----CCCCCCC-h
Q psy11160 16 VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-------IRQWNSNK----LPIYEPG-L 83 (598)
Q Consensus 16 vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-------~~~~~~~~----~~~~e~~-~ 83 (598)
||..+|..++. +|++|+++|++++. ++...+.. ....+.+ +
T Consensus 1 MG~giA~~~a~---------------------------~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 53 (314)
T PRK08269 1 MGQGIALAFAF---------------------------AGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRI 53 (314)
T ss_pred CcHHHHHHHHh---------------------------CCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 79999999999 89999999999953 22211100 0000001 0
Q ss_pred HHHHhhhcCCceEEecC--HHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKKTRDVNLFFSTD--IKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~--~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+--......+++++++ +.+++++||+||.|||.+. ..=..++.+|.+.+++++|+ .||.+.-
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~-------------~~K~~~f~~l~~~~~~~~il--aSntS~~ 118 (314)
T PRK08269 54 DAAQADAVLARIAVVARDGAADALADADLVFEAVPEVL-------------DAKREALRWLGRHVDADAII--ASTTSTF 118 (314)
T ss_pred ChhhHHHHHhCeEeecCcchHHHhccCCEEEECCcCCH-------------HHHHHHHHHHHhhCCCCcEE--EEccccC
Confidence 00000011246777765 6678999999999997653 22345677888999999888 3555444
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
...+++..++ ++... .| .+
T Consensus 119 ~~~~la~~~~------------------------------~p~r~------------------------~g--~H----- 137 (314)
T PRK08269 119 LVTDLQRHVA------------------------------HPERF------------------------LN--AH----- 137 (314)
T ss_pred CHHHHHhhcC------------------------------CcccE------------------------EE--Ee-----
Confidence 4444443100 00000 01 11
Q ss_pred cccCcCchhhhcCCCCE-----EEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADR-----ILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~r-----v~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
+++|+. =+++|... .+++++.+.++++.+++ .++++++.. + +++......+++
T Consensus 138 -----------f~~Pp~~~~lvEVv~g~~t--~~e~~~~~~~ll~~lGk-~~v~v~d~~-G-------fi~nri~~~~l~ 195 (314)
T PRK08269 138 -----------WLNPAYLMPLVEVSPSDAT--DPAVVDRLAALLERIGK-VPVVCGPSP-G-------YIVPRIQALAMN 195 (314)
T ss_pred -----------cCCccccCceEEEeCCCCC--CHHHHHHHHHHHHHcCC-cEEEecCCC-C-------cchHHHHHHHHH
Confidence 222221 13455432 34789999999999874 567776543 2 234566778889
Q ss_pred HHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 317 SLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~~~ 340 (598)
|...++++.+++++++-+++....
T Consensus 196 EAl~l~e~g~~~~e~iD~a~~~g~ 219 (314)
T PRK08269 196 EAARMVEEGVASAEDIDKAIRTGF 219 (314)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCC
Confidence 999999999999999999987543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-07 Score=92.21 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=72.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEE--eCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV--DKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~--d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.++|+|+|+|.||.++|..|.. .|+.|.++ |++.+..+.-....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~---------------------------~g~~v~i~g~d~~~~~~~~a~~lg------- 48 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKE---------------------------AGLVVRIIGRDRSAATLKAALELG------- 48 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHH---------------------------cCCeEEEEeecCcHHHHHHHhhcC-------
Confidence 5799999999999999999999 78877555 55554444433210
Q ss_pred hHHHHhhhcCCceEEecCH-HHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDI-KSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.....+.+. .+++.+||+||+|||-. .+.++++.+.+.++++++|++-+++--.
T Consensus 49 ----------v~d~~~~~~~~~~~~~aD~VivavPi~---------------~~~~~l~~l~~~l~~g~iv~Dv~S~K~~ 103 (279)
T COG0287 49 ----------VIDELTVAGLAEAAAEADLVIVAVPIE---------------ATEEVLKELAPHLKKGAIVTDVGSVKSS 103 (279)
T ss_pred ----------cccccccchhhhhcccCCEEEEeccHH---------------HHHHHHHHhcccCCCCCEEEecccccHH
Confidence 011222333 45788899999998754 5788889999999999999987777544
Q ss_pred HH
Q psy11160 162 AA 163 (598)
Q Consensus 162 ~~ 163 (598)
-.
T Consensus 104 v~ 105 (279)
T COG0287 104 VV 105 (279)
T ss_pred HH
Confidence 44
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=108.46 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=84.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+.+|+|||+|.||..+|..++. .|++|+++|++++.++...+... ..+
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~---------------------------~G~~V~l~d~~~~~l~~~~~~i~----~~l 382 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVD---------------------------KGLKTVLKDATPAGLDRGQQQVF----KGL 382 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHh---------------------------CCCcEEEecCCHHHHHHHHHHHH----HHH
Confidence 35789999999999999999999 89999999999998776432110 001
Q ss_pred HHHHh---------hhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-E
Q psy11160 84 DEVVK---------KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-V 153 (598)
Q Consensus 84 ~~~~~---------~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v 153 (598)
+..++ .....+++.++|++ ++++||+||-+|+.. ++.=.++++++.+.+++++|+ .
T Consensus 383 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E~-------------l~~K~~vf~~l~~~~~~~~ilas 448 (737)
T TIGR02441 383 NKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEAVFED-------------LSLKHKVIKEVEAVVPPHCIIAS 448 (737)
T ss_pred HHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhhcccc-------------HHHHHHHHHHHHhhCCCCcEEEE
Confidence 11111 11125789999996 789999999999653 333467889999999999887 5
Q ss_pred EecCCchHHH
Q psy11160 154 EKSTVPVRAA 163 (598)
Q Consensus 154 ~~STv~~~~~ 163 (598)
++||.++...
T Consensus 449 NTSsl~i~~l 458 (737)
T TIGR02441 449 NTSALPIKDI 458 (737)
T ss_pred cCCCCCHHHH
Confidence 5677776543
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-08 Score=102.15 Aligned_cols=125 Identities=24% Similarity=0.402 Sum_probs=88.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|||+|||+ |++|..+|..|+. .|+ +|+++|+++ +.+.++....++.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~---------------------------~g~~~~v~lvd~~~-~~~~l~~~~~dl~d-- 50 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK---------------------------EDVVKEINLISRPK-SLEKLKGLRLDIYD-- 50 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh---------------------------CCCCCEEEEEECcc-cccccccccchhhh--
Confidence 69999998 9999999999999 454 699999954 44444444444331
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+.......+++++++++ ++++||+||+++++|..+++++.+ ...+.+.++++.+.|.+..+...++|..+++++.
T Consensus 51 --~~~~~~~~~~i~~~~d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~ 127 (309)
T cd05294 51 --ALAAAGIDAEIKISSDLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVM 127 (309)
T ss_pred --chhccCCCcEEEECCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHH
Confidence 111111112466677765 699999999999998765432111 1223388999999999998888889999999998
Q ss_pred HH
Q psy11160 162 AA 163 (598)
Q Consensus 162 ~~ 163 (598)
+.
T Consensus 128 t~ 129 (309)
T cd05294 128 TY 129 (309)
T ss_pred HH
Confidence 85
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-06 Score=90.69 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=71.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..|.+ .|++|++||+++.. +....
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~---------------------------~G~~V~~~d~~~~~-~~a~~----------- 76 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVK---------------------------QGHTVLATSRSDYS-DIAAE----------- 76 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHh---------------------------CCCEEEEEECccHH-HHHHH-----------
Confidence 4799999999999999999998 78999999998643 22221
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHH-HHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMI-AEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ivv~~STv~~~~ 162 (598)
.+....++.++++ .++|+||+|||.. .+.++++.+ .+.++++++|++-+++-...
T Consensus 77 --------~gv~~~~~~~e~~~~~aDvVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~ 133 (304)
T PLN02256 77 --------LGVSFFRDPDDFCEEHPDVVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFP 133 (304)
T ss_pred --------cCCeeeCCHHHHhhCCCCEEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHH
Confidence 0123456676665 4799999998643 467777777 56788999998877764434
Q ss_pred H
Q psy11160 163 A 163 (598)
Q Consensus 163 ~ 163 (598)
.
T Consensus 134 ~ 134 (304)
T PLN02256 134 K 134 (304)
T ss_pred H
Confidence 3
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-08 Score=98.47 Aligned_cols=72 Identities=26% Similarity=0.341 Sum_probs=52.6
Q ss_pred ccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCC
Q psy11160 178 VQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNAD 257 (598)
Q Consensus 178 ~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~ 257 (598)
|...++.+|++||++|++.|+++++++.+||+|||||||||+ +++.+.++.. ...+..++..++||
T Consensus 87 P~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~---~~~~~ile~~-----------~~~~~~f~la~~PE 152 (185)
T PF03721_consen 87 PSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE---ELLKPILEKR-----------SGKKEDFHLAYSPE 152 (185)
T ss_dssp EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH---HHHHHHHHHH-----------CCTTTCEEEEE---
T ss_pred CccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh---Hhhhhhhhhh-----------cccccCCeEEECCC
Confidence 344578999999999999999999999999999999999998 5776655321 11125678899999
Q ss_pred EEEEcc
Q psy11160 258 RILIGG 263 (598)
Q Consensus 258 rv~vGg 263 (598)
|+..|.
T Consensus 153 rl~~G~ 158 (185)
T PF03721_consen 153 RLREGR 158 (185)
T ss_dssp ---TTS
T ss_pred ccCCCC
Confidence 998874
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-06 Score=89.89 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=71.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.+++..|.++ . . + ...+++++|+++++. +
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~------------------~--~--~~~~i~~~~~~~~~~-----~----------- 44 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-N------------------I--I--GKENIYYHTPSKKNT-----P----------- 44 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-C------------------C--C--CcceEEEECCChhcC-----C-----------
Confidence 6899999999999999999981 0 0 0 124699999876542 1
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
...+.+..++++++|+||+|||.. .+.++++.+.+.+.++.+|.+.+.+...+.+
T Consensus 45 ---------~~~~~~~~~~~~~~D~Vilavkp~---------------~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~ 99 (260)
T PTZ00431 45 ---------FVYLQSNEELAKTCDIIVLAVKPD---------------LAGKVLLEIKPYLGSKLLISICGGLNLKTLE 99 (260)
T ss_pred ---------eEEeCChHHHHHhCCEEEEEeCHH---------------HHHHHHHHHHhhccCCEEEEEeCCccHHHHH
Confidence 123456667788999999998532 5788888998888777778888888766654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=99.61 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=71.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..|.. .|++|++||++.+. +...+
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~---------------------------~G~~V~~~dr~~~~-~~a~~----------- 409 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVK---------------------------QGHTVLAYSRSDYS-DEAQK----------- 409 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHH---------------------------CcCEEEEEECChHH-HHHHH-----------
Confidence 4799999999999999999999 78999999998653 22221
Q ss_pred HHHhhhcCCceEEecCHHHHhc-cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH-HcCCCcEEEEecCCc
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ-KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE-IATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~ivv~~STv~ 159 (598)
.+....++.++++. .+|+||+|||.. .+.++++.+.. .++++++|++.+++-
T Consensus 410 --------~Gv~~~~~~~el~~~~aDvVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK 463 (667)
T PLN02712 410 --------LGVSYFSDADDLCEEHPEVILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVK 463 (667)
T ss_pred --------cCCeEeCCHHHHHhcCCCEEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCcc
Confidence 01234567776665 599999998743 35666777765 578899999998886
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=102.28 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=83.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
..+|+|||+|.||.++|..|.. .| ++|++||+++++.+.+.+...
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~---------------------------~G~~~~V~~~d~~~~~~~~a~~~g~------ 49 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRE---------------------------RGLAREVVAVDRRAKSLELAVSLGV------ 49 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHh---------------------------cCCCCEEEEEECChhHHHHHHHCCC------
Confidence 4789999999999999999998 66 589999999999877653210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
....+++..++++++|+||+|||.. .+.++++.+.+.++++++|++.+++....
T Consensus 50 -----------~~~~~~~~~~~~~~aDvVilavp~~---------------~~~~vl~~l~~~~~~~~ii~d~~svk~~~ 103 (735)
T PRK14806 50 -----------IDRGEEDLAEAVSGADVIVLAVPVL---------------AMEKVLADLKPLLSEHAIVTDVGSTKGNV 103 (735)
T ss_pred -----------CCcccCCHHHHhcCCCEEEECCCHH---------------HHHHHHHHHHHhcCCCcEEEEcCCCchHH
Confidence 0113456677889999999998742 47788889999999999999999998777
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
.+.+..
T Consensus 104 ~~~l~~ 109 (735)
T PRK14806 104 VDAARA 109 (735)
T ss_pred HHHHHH
Confidence 665543
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=93.11 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=68.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC-CCCCCh
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP-IYEPGL 83 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~-~~e~~~ 83 (598)
|||+||| +|.||.++|..|++ .|++|+++++++++.+.+++.... +...+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~---------------------------~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~ 53 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK---------------------------AGNKIIIGSRDLEKAEEAAAKALEELGHGGS 53 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh---------------------------CCCEEEEEEcCHHHHHHHHHHHHhhccccCC
Confidence 5899997 89999999999999 899999999999998887642110 000000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
..+... ++..++++++|+||+|||.+ .+.++++.+.+.+.. ++|+.
T Consensus 54 --------~~~~~~-~~~~ea~~~aDvVilavp~~---------------~~~~~l~~l~~~l~~-~vvI~ 99 (219)
T TIGR01915 54 --------DIKVTG-ADNAEAAKRADVVILAVPWD---------------HVLKTLESLRDELSG-KLVIS 99 (219)
T ss_pred --------CceEEE-eChHHHHhcCCEEEEECCHH---------------HHHHHHHHHHHhccC-CEEEE
Confidence 011233 35567899999999998754 466677777776654 65553
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.2e-08 Score=101.13 Aligned_cols=122 Identities=25% Similarity=0.277 Sum_probs=82.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|+||+|||+|+||..+|..++. .|+ +|+++|+++++.+.... .+.+..
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~---------------------------~~~~ev~L~D~~~~~~~~~~~---dl~~~~- 50 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLAL---------------------------KELGDVVLFDIVEGVPQGKAL---DIAEAA- 50 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEEECCCchhHHHHH---HHHhhh-
Confidence 4799999999999999999998 554 99999999887654321 011100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.......++++++|++ ++++||+||++++.|.+++.++.+ -..++..++++++.|.+..++..+++. |-|...
T Consensus 51 ---~~~~~~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~ 124 (307)
T PRK06223 51 ---PVEGFDTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDA 124 (307)
T ss_pred ---hhcCCCcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 0001123567778885 789999999999888765321100 124567788888999988866656665 444444
Q ss_pred H
Q psy11160 163 A 163 (598)
Q Consensus 163 ~ 163 (598)
.
T Consensus 125 ~ 125 (307)
T PRK06223 125 M 125 (307)
T ss_pred H
Confidence 3
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-06 Score=86.24 Aligned_cols=88 Identities=25% Similarity=0.413 Sum_probs=69.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
++||+|||+|.||..|+..|.+ .| .+|++.++++++.+.+....
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~---------------------------~g~~~~~~I~v~~~~~e~~~~l~~~~----- 48 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLK---------------------------SGALPPEEIIVTNRSEEKRAALAAEY----- 48 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHh---------------------------cCCCCcceEEEeCCCHHHHHHHHHHc-----
Confidence 3789999999999999999998 44 79999999999998555321
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
+...+++..+++.++|+||+||. |. .+++++..+.+ ..++++||
T Consensus 49 -------------g~~~~~~~~~~~~~advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI 92 (266)
T COG0345 49 -------------GVVTTTDNQEAVEEADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI 92 (266)
T ss_pred -------------CCcccCcHHHHHhhCCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE
Confidence 11126777788999999999994 43 46778888877 67777776
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-06 Score=89.20 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=69.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+ |.||.++|..|.+ . .|++|+++|++. +
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~-------------------------~-~~~~V~g~D~~d-------~---------- 40 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRT-------------------------R-MQLEVIGHDPAD-------P---------- 40 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh-------------------------c-CCCEEEEEcCCc-------c----------
Confidence 479999999 9999999999997 1 478999999840 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH---cCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI---ATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~ivv~~STv~~ 160 (598)
.+.++.+++++||+||+|||.. .+.++++++++. ++++++|++-+++-.
T Consensus 41 -------------~~~~~~~~v~~aDlVilavPv~---------------~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~ 92 (370)
T PRK08818 41 -------------GSLDPATLLQRADVLIFSAPIR---------------HTAALIEEYVALAGGRAAGQLWLDVTSIKQ 92 (370)
T ss_pred -------------ccCCHHHHhcCCCEEEEeCCHH---------------HHHHHHHHHhhhhcCCCCCeEEEECCCCcH
Confidence 1235667889999999998643 567788888876 789999999888764
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
.-.
T Consensus 93 ~i~ 95 (370)
T PRK08818 93 APV 95 (370)
T ss_pred HHH
Confidence 433
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=91.54 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=80.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHH----HHcCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQ----WNSNKLPIY 79 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~----~~~~~~~~~ 79 (598)
|||+|||+|+||.++|..|+. .| .+|+++|+++++.+. ++.. .++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~---------------------------~g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~ 52 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLL---------------------------RGLASEIVLVDINKAKAEGEAMDLAHG-TPFV 52 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------cCCCCEEEEEECCchhhhhHHHHHHcc-cccc
Confidence 589999999999999999999 56 699999999987764 4432 2222
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
++ ....+++++ ++++||++|++++.|.++..++.+ ...+.+.+++..+.|.++.+++.+++. |-
T Consensus 53 ~~------------~~i~~~d~~-~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~--tN 117 (308)
T cd05292 53 KP------------VRIYAGDYA-DCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV--TN 117 (308)
T ss_pred CC------------eEEeeCCHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cC
Confidence 21 122356764 799999999999998765332100 122455677777778777756555554 45
Q ss_pred chHHHHHHH
Q psy11160 159 PVRAAESIM 167 (598)
Q Consensus 159 ~~~~~~~~~ 167 (598)
|....-.++
T Consensus 118 P~d~~~~~~ 126 (308)
T cd05292 118 PVDVLTYVA 126 (308)
T ss_pred cHHHHHHHH
Confidence 655554444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=91.15 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=67.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCH-HHHHHHHcCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSE-ERIRQWNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~-~~~~~~~~~~~~~~e 80 (598)
++|+|||+|.||.+++..|.+ .| ++|++|++++ ++.+.+....
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~---------------------------~g~~~~~~V~~~~r~~~~~~~~l~~~~----- 49 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLE---------------------------TEVATPEEIILYSSSKNEHFNQLYDKY----- 49 (277)
T ss_pred CEEEEECccHHHHHHHHHHHH---------------------------CCCCCcccEEEEeCCcHHHHHHHHHHc-----
Confidence 689999999999999999998 55 7899999864 4455544210
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.....+.+..++++++|+||+|||.. .+.++++++.+.++++++||
T Consensus 50 ------------~~~~~~~~~~e~~~~aDvVilavpp~---------------~~~~vl~~l~~~l~~~~~iv 95 (277)
T PRK06928 50 ------------PTVELADNEAEIFTKCDHSFICVPPL---------------AVLPLLKDCAPVLTPDRHVV 95 (277)
T ss_pred ------------CCeEEeCCHHHHHhhCCEEEEecCHH---------------HHHHHHHHHHhhcCCCCEEE
Confidence 12345677777889999999998732 47788888988888777655
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.8e-07 Score=94.10 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=79.3
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
|+|||+|+||..+|..++. .|+ +|+++|+++++.+.... .+.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~---------------------------~~l~eV~L~Di~e~~~~g~~~--------dl~~~ 45 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL---------------------------KELGDVVLLDIVEGLPQGKAL--------DISQA 45 (300)
T ss_pred CEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEEeCCCcHHHHHHH--------HHHHh
Confidence 6899999999999999998 555 99999999876543221 11111
Q ss_pred Hhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 87 VKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.... ...+++.++|++ ++++||+||+++++|.++++.+.+ -..++..++++++.|.+..+++.+++...++
T Consensus 46 ~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~ 118 (300)
T cd01339 46 APILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL 118 (300)
T ss_pred hhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 1111 123577777875 699999999999998765432111 1236777888889999988777666665444
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.4e-07 Score=82.32 Aligned_cols=123 Identities=22% Similarity=0.272 Sum_probs=80.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+ |.||..+|..|.. ++.+.++.++|+++++.+.... ++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~-------------------------~~l~~ei~L~D~~~~~~~g~a~--------Dl~ 47 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQ-------------------------QGLADEIVLIDINEDKAEGEAL--------DLS 47 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHH-------------------------TTTSSEEEEEESSHHHHHHHHH--------HHH
T ss_pred CEEEEECCCChHHHHHHHHHHh-------------------------CCCCCceEEeccCcccceeeeh--------hhh
Confidence 69999999 9999999999998 2245689999999887765431 111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
...... ....+...+..+++++||+||++...|..+..++.+ -..+.+.+++..+.|.++.+++.+++. |-|....
T Consensus 48 ~~~~~~-~~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv--tNPvd~~ 124 (141)
T PF00056_consen 48 HASAPL-PSPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV--TNPVDVM 124 (141)
T ss_dssp HHHHGS-TEEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHHH
T ss_pred hhhhhc-ccccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe--CCcHHHH
Confidence 111111 122334445556899999999999888765432111 133456677777888888866655554 5555544
Q ss_pred H
Q psy11160 164 E 164 (598)
Q Consensus 164 ~ 164 (598)
-
T Consensus 125 t 125 (141)
T PF00056_consen 125 T 125 (141)
T ss_dssp H
T ss_pred H
Confidence 3
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.5e-07 Score=93.13 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=73.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..|.+ .|++|++++++..+.......
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~---------------------------sG~~Vvv~~r~~~~s~~~A~~---------- 59 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRD---------------------------SGVDVVVGLREGSKSWKKAEA---------- 59 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHH---------------------------CCCEEEEEECCchhhHHHHHH----------
Confidence 3689999999999999999999 899999988875443322211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.+... .+..+++++||+|+++||.. ....++ +.|.+.++++++|+..+-++....
T Consensus 60 --------~G~~~-~s~~eaa~~ADVVvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~ 115 (330)
T PRK05479 60 --------DGFEV-LTVAEAAKWADVIMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFG 115 (330)
T ss_pred --------CCCee-CCHHHHHhcCCEEEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhc
Confidence 12233 37788999999999999743 235566 778899999999988777666554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=85.44 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=69.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC-CHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK-SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~-~~~~~~~~~~~~~~~~e~~~ 83 (598)
||+|+|+|.|.+|..+|..|++ .||+|+.-.+ .+++.+...+...+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~---------------------------ag~eV~igs~r~~~~~~a~a~~l~~------ 47 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK---------------------------AGHEVIIGSSRGPKALAAAAAALGP------ 47 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHh---------------------------CCCeEEEecCCChhHHHHHHHhhcc------
Confidence 4789999999999999999999 8999999854 55556655543221
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.++. .+.++|++.||+||++||.+ ++..+++++...+. ++|||+ .|+|
T Consensus 48 ----------~i~~-~~~~dA~~~aDVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp 95 (211)
T COG2085 48 ----------LITG-GSNEDAAALADVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNP 95 (211)
T ss_pred ----------cccc-CChHHHHhcCCEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCC
Confidence 1232 34567899999999999764 46677777777665 777765 6666
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=91.60 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=79.2
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|||+|+||.++|..++. .| .+++++|+++++++.+... +++
T Consensus 1 i~iiGaG~VG~~~a~~l~~---------------------------~~~~~el~l~D~~~~~~~g~~~D--------L~~ 45 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA---------------------------KGLASELVLVDVNEEKAKGDALD--------LSH 45 (300)
T ss_pred CEEECCCHHHHHHHHHHHh---------------------------cCCCCEEEEEeCCccHHHHHHHh--------HHH
Confidence 6899999999999999998 55 6899999999988876642 222
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
........+++.+++++ ++++||+||+++++|..+..++.+ -..+...+++..+.|.++.+++.+++. | -|....-
T Consensus 46 ~~~~~~~~~i~~~~~~~-~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~-s-NP~d~~~ 122 (300)
T cd00300 46 ASAFLATGTIVRGGDYA-DAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV-S-NPVDILT 122 (300)
T ss_pred hccccCCCeEEECCCHH-HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc-c-ChHHHHH
Confidence 22111112455566765 899999999999998765432211 122345566667777777744444443 3 4444443
Q ss_pred HH
Q psy11160 165 SI 166 (598)
Q Consensus 165 ~~ 166 (598)
.+
T Consensus 123 ~~ 124 (300)
T cd00300 123 YV 124 (300)
T ss_pred HH
Confidence 33
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.2e-06 Score=88.83 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=69.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||.++|..|+. .|++|++||+++......
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~---------------------------~G~~V~~~d~~~~~~~~~-------------- 185 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAG---------------------------FGATITAYDAYPNKDLDF-------------- 185 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEeCChhHhhhh--------------
Confidence 689999999999999999998 799999999987542210
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
...+.++++++++||+|++++|.... ...+ ..+.+.+.++++.++|+.|--..
T Consensus 186 ---------~~~~~~l~ell~~aDiVil~lP~t~~-----------t~~l--i~~~~l~~mk~gavlIN~aRG~~ 238 (330)
T PRK12480 186 ---------LTYKDSVKEAIKDADIISLHVPANKE-----------SYHL--FDKAMFDHVKKGAILVNAARGAV 238 (330)
T ss_pred ---------hhccCCHHHHHhcCCEEEEeCCCcHH-----------HHHH--HhHHHHhcCCCCcEEEEcCCccc
Confidence 12345788899999999999876431 1122 33677788999999998654433
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-06 Score=88.40 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=77.3
Q ss_pred CCCC-CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCC
Q psy11160 1 MVQT-ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLP 77 (598)
Q Consensus 1 m~~~-~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~ 77 (598)
||++ .+||+|||+|.||.++|..|+. .|. ++.++|+++++.+....-
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~---------------------------~~~~~el~L~D~~~~~~~g~~~D--- 50 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVN---------------------------QGIADELVIIDINKEKAEGDAMD--- 50 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHh---------------------------cCCCCEEEEEeCCCchhHHHHHH---
Confidence 5655 4799999999999999999998 454 899999998876543321
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+.+...-.....++ +++++ ++++||+||++...|.++..++.+ -..+...+++..+.+.++.++..+++..
T Consensus 51 -----l~~~~~~~~~~~i~-~~~~~-~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs- 122 (315)
T PRK00066 51 -----LSHAVPFTSPTKIY-AGDYS-DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS- 122 (315)
T ss_pred -----HHhhccccCCeEEE-eCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-
Confidence 10100000011233 45564 799999999999888765432211 1223445666667777766655554442
Q ss_pred CCchHHH
Q psy11160 157 TVPVRAA 163 (598)
Q Consensus 157 Tv~~~~~ 163 (598)
-|....
T Consensus 123 -NP~d~~ 128 (315)
T PRK00066 123 -NPVDIL 128 (315)
T ss_pred -CcHHHH
Confidence 444443
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.5e-06 Score=74.53 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccccc-------c-c--cccCccccccchhhhHHH
Q psy11160 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGA-------K-F--LQASVGFGGSCFQKDILN 364 (598)
Q Consensus 295 ~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~-------~-~--l~~~~gfgg~cl~KD~~~ 364 (598)
++|..+|+++|.+...++..+.|...++++.|+|++.+.++++..+.-++ . + -++.++|....+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 57889999999999999999999999999999999999999998663221 1 1 146688999999999999
Q ss_pred HHHHHHHcCCh
Q psy11160 365 LVYICECLNLP 375 (598)
Q Consensus 365 L~~~a~~~G~~ 375 (598)
..+.|++.|++
T Consensus 81 ~~~~a~~~g~~ 91 (122)
T PF14833_consen 81 ALDLAKEAGVP 91 (122)
T ss_dssp HHHHHHHTT--
T ss_pred HHHHHHHcCCC
Confidence 99999999997
|
... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.8e-06 Score=87.49 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=78.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.+|.++|..|+. .| ++|+++|+++++.+.+... +
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~---------------------------~g~~~ei~l~D~~~~~~~~~a~d--------L 45 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVN---------------------------QGIADELVLIDINEEKAEGEALD--------L 45 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------cCCCCEEEEEeCCcchhhHhHhh--------H
Confidence 489999999999999999998 56 6999999999987765431 2
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+............+.+++ .+++||+||++++.|..+..++.+ -..+...+++..+.|.++.++..+++. |-|...
T Consensus 46 ~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivv--sNP~d~ 122 (306)
T cd05291 46 EDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVA--SNPVDV 122 (306)
T ss_pred HHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--cChHHH
Confidence 1111100011122345554 689999999999888765432111 122344566666777776665544444 345554
Q ss_pred HHHHH
Q psy11160 163 AESIM 167 (598)
Q Consensus 163 ~~~~~ 167 (598)
.-.++
T Consensus 123 ~~~~~ 127 (306)
T cd05291 123 ITYVV 127 (306)
T ss_pred HHHHH
Confidence 43333
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-06 Score=87.84 Aligned_cols=105 Identities=12% Similarity=0.197 Sum_probs=76.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..|++. .|.+|++||+++.... ..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~--------------------------~g~~V~~~d~~~~~~~--~~----------- 186 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKG--------------------------YGSDVVAYDPFPNAKA--AT----------- 186 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--------------------------CCCEEEEECCCccHhH--Hh-----------
Confidence 36899999999999999999540 5889999998764321 11
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
....+.++++++++||+|++++|..... ..+.. +...+.++++.++|+.|+...-.++
T Consensus 187 ---------~~~~~~~l~ell~~aDvIvl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~ 244 (332)
T PRK08605 187 ---------YVDYKDTIEEAVEGADIVTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTK 244 (332)
T ss_pred ---------hccccCCHHHHHHhCCEEEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHH
Confidence 1233457888999999999998765321 11211 3466788999999999999887777
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+...+
T Consensus 245 aL~~aL 250 (332)
T PRK08605 245 ALLDAL 250 (332)
T ss_pred HHHHHH
Confidence 776633
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.3e-06 Score=85.24 Aligned_cols=91 Identities=11% Similarity=0.161 Sum_probs=67.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||.++|..|.. .|++|+++++.....+....
T Consensus 17 KtVGIIG~GsIG~amA~nL~d---------------------------~G~~ViV~~r~~~s~~~A~~------------ 57 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRD---------------------------SGVEVVVGVRPGKSFEVAKA------------ 57 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHH---------------------------CcCEEEEEECcchhhHHHHH------------
Confidence 689999999999999999999 89999999876433332221
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv 158 (598)
.+... .+++++++.||+|++++|.+.. +.++ +.+.+.++++.+++..--.
T Consensus 58 -------~G~~v-~sl~Eaak~ADVV~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hgf 108 (335)
T PRK13403 58 -------DGFEV-MSVSEAVRTAQVVQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHGF 108 (335)
T ss_pred -------cCCEE-CCHHHHHhcCCEEEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCCc
Confidence 12232 3788899999999999986421 2333 5688999999988765443
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.4e-06 Score=87.62 Aligned_cols=119 Identities=14% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+.+||+|||+|.||..+|..++. .|+ +|+++|+++++.+.-.-.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~---------------------------~gl~~i~LvDi~~~~~~~~~ld-------- 49 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL---------------------------KNLGDVVLFDIVKNIPQGKALD-------- 49 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEeCCCchhhHHHHH--------
Confidence 34799999999999999999998 674 899999999865321100
Q ss_pred hHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCC-----CCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 83 LDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFG-----NGKG-RAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~-----~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
+...... ....+++.++|++ ++++||+||++...|..+.. ++.+ -..+...+++.++.|.++.++..+++..
T Consensus 50 ~~~~~~~~~~~~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s 128 (321)
T PTZ00082 50 ISHSNVIAGSNSKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT 128 (321)
T ss_pred HHhhhhccCCCeEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 0000000 0113567778885 89999999999877654321 0000 0224556777778888888666555554
Q ss_pred cCC
Q psy11160 156 STV 158 (598)
Q Consensus 156 STv 158 (598)
.++
T Consensus 129 NP~ 131 (321)
T PTZ00082 129 NPL 131 (321)
T ss_pred CcH
Confidence 333
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.5e-06 Score=86.22 Aligned_cols=120 Identities=11% Similarity=0.174 Sum_probs=78.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc---CCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS---NKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~---~~~~~~e~ 81 (598)
.+||+|||+|.||.++|..|+. ++..-++.++|+++++.+.... ...++.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~-------------------------~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-- 55 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA-------------------------KGLADELVLVDVVEDKLKGEAMDLQHGSAFL-- 55 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEeCCccHHHHHHHHHHHhhccC--
Confidence 4699999999999999999988 2233589999998876654321 001111
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
....++.++|++ .+++||+||++...|.++..++.+ -..+...+++..+.|.++.+++.+++.. -|.
T Consensus 56 ---------~~~~v~~~~dy~-~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~ 123 (312)
T cd05293 56 ---------KNPKIEADKDYS-VTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPV 123 (312)
T ss_pred ---------CCCEEEECCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChH
Confidence 012466678887 599999999999887765322111 1334556677777787776555555543 444
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
...
T Consensus 124 d~~ 126 (312)
T cd05293 124 DIM 126 (312)
T ss_pred HHH
Confidence 443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-05 Score=76.30 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=54.0
Q ss_pred CceEEEEeCCHHHHHHHH-cCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchH
Q psy11160 55 NIQVTVVDKSEERIRQWN-SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLK 133 (598)
Q Consensus 55 g~~v~~~d~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~ 133 (598)
.++|+++|++++.++... .|.. ....++ .++++++|+||+|||..
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~g~~------------------~~~~~~-~~~~~~~DlvvlavP~~--------------- 56 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALELGII------------------DEASTD-IEAVEDADLVVLAVPVS--------------- 56 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHTTSS------------------SEEESH-HHHGGCCSEEEE-S-HH---------------
T ss_pred CeEEEEEeCCHHHHHHHHHCCCe------------------eeccCC-HhHhcCCCEEEEcCCHH---------------
Confidence 389999999999988764 3321 233444 46899999999998642
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCchHHHHHH
Q psy11160 134 YVEAAARMIAEIATDNKIVVEKSTVPVRAAESI 166 (598)
Q Consensus 134 ~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~ 166 (598)
.+..+++++.++++++++|++-++|--...+.+
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~ 89 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAM 89 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHH
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHH
Confidence 588899999999999999999888876555443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=85.17 Aligned_cols=104 Identities=10% Similarity=0.128 Sum_probs=76.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. .|.+|++||+++..... ..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~~~-~~----------- 190 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKG---------------------------FGMRILYYSRTRKPEAE-KE----------- 190 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCCCChhhH-HH-----------
Confidence 3689999999999999999988 78999999997543211 11
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+.. ..++++.+++||+|++++|....+ ..+. -+.....++++.++|+.|+...-..+
T Consensus 191 --------~~~~-~~~l~ell~~aDiV~l~lP~t~~T-----------~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~ 248 (333)
T PRK13243 191 --------LGAE-YRPLEELLRESDFVSLHVPLTKET-----------YHMI--NEERLKLMKPTAILVNTARGKVVDTK 248 (333)
T ss_pred --------cCCE-ecCHHHHHhhCCEEEEeCCCChHH-----------hhcc--CHHHHhcCCCCeEEEECcCchhcCHH
Confidence 0122 246788899999999998754321 1121 23567788999999999998887776
Q ss_pred HHHHH
Q psy11160 165 SIMNV 169 (598)
Q Consensus 165 ~~~~~ 169 (598)
.+...
T Consensus 249 aL~~a 253 (333)
T PRK13243 249 ALVKA 253 (333)
T ss_pred HHHHH
Confidence 66653
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=83.64 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=69.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC-CHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK-SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~-~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||.++|..|.+ .|++|+++++ ++++.+.+.+.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~---------------------------sG~~Viv~~~~~~~~~~~a~~~--------- 46 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRD---------------------------SGLNVIVGLRKGGASWKKATED--------- 46 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHH---------------------------CCCeEEEEECcChhhHHHHHHC---------
Confidence 3689999999999999999999 7888877554 44455544321
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++.. .+..+++++||+|+++||... ....+.+.|.+.++++.+|.+..-++...
T Consensus 47 ----------Gv~~-~s~~ea~~~ADiVvLaVpp~~--------------~~~~v~~ei~~~l~~g~iVs~aaG~~i~~ 100 (314)
T TIGR00465 47 ----------GFKV-GTVEEAIPQADLIMNLLPDEV--------------QHEVYEAEIQPLLKEGKTLGFSHGFNIHF 100 (314)
T ss_pred ----------CCEE-CCHHHHHhcCCEEEEeCCcHh--------------HHHHHHHHHHhhCCCCcEEEEeCCccHhh
Confidence 2333 346778999999999997321 23445667888888888887766665544
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=82.34 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=82.1
Q ss_pred EEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 8 ICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 8 I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|+|||+ |.||..+|..|+. .| .+|+++|+++++++....-
T Consensus 1 I~IIGagG~vG~~ia~~l~~---------------------------~~~~~~~el~L~D~~~~~l~~~~~d-------- 45 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLAD---------------------------GSVLLAIELVLYDIDEEKLKGVAMD-------- 45 (263)
T ss_pred CEEECCCChHHHHHHHHHHh---------------------------CCCCcceEEEEEeCCcccchHHHHH--------
Confidence 689999 9999999999998 44 7999999998777654321
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.+........++++++|+.+++++||+||++...|..+...+.+ -..+.+.+++..+.|.++. ++.++++- |-|.+
T Consensus 46 l~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~-tNP~d 123 (263)
T cd00650 46 LQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV-SNPVD 123 (263)
T ss_pred HHHhhhhccCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCcHH
Confidence 111111111246778888778999999999998776554321110 1224556777777777777 44444443 57776
Q ss_pred HHHHHHH
Q psy11160 162 AAESIMN 168 (598)
Q Consensus 162 ~~~~~~~ 168 (598)
..-.++.
T Consensus 124 ~~t~~~~ 130 (263)
T cd00650 124 IITYLVW 130 (263)
T ss_pred HHHHHHH
Confidence 6644443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=75.29 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=71.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|+|+|.+|.+++..|++ .| ++|+++|+++++.+.+.+.....
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~---------------------------~g~~~v~v~~r~~~~~~~~~~~~~~~----- 66 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAE---------------------------LGAAKIVIVNRTLEKAKALAERFGEL----- 66 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEcCCHHHHHHHHHHHhhc-----
Confidence 4689999999999999999998 54 89999999999887765311000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.......+..+.++++|+||+|+|.+.... .+.. +. ...++++++|++.||+|+.+
T Consensus 67 ---------~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~-------~~~~-~~------~~~~~~~~~v~D~~~~~~~~ 122 (155)
T cd01065 67 ---------GIAIAYLDLEELLAEADLIINTTPVGMKPG-------DELP-LP------PSLLKPGGVVYDVVYNPLET 122 (155)
T ss_pred ---------ccceeecchhhccccCCEEEeCcCCCCCCC-------CCCC-CC------HHHcCCCCEEEEcCcCCCCC
Confidence 000123455666899999999998765300 0000 00 12357899999999997765
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-05 Score=85.00 Aligned_cols=105 Identities=9% Similarity=0.132 Sum_probs=77.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..|.. .|.+|.+||++....+....
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~---------------------------fG~~V~~~dr~~~~~~~~~~------------ 233 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKP---------------------------FDVKLHYTDRHRLPEEVEQE------------ 233 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEECCCCCchhhHhh------------
Confidence 689999999999999999988 78999999987532221111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.+.+...++++++++||+|++++|-.. +...+. -++....++++.++|+.|....-..+.
T Consensus 234 -------~g~~~~~~l~ell~~aDvV~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~A 293 (385)
T PRK07574 234 -------LGLTYHVSFDSLVSVCDVVTIHCPLHP-----------ETEHLF--DADVLSRMKRGSYLVNTARGKIVDRDA 293 (385)
T ss_pred -------cCceecCCHHHHhhcCCEEEEcCCCCH-----------HHHHHh--CHHHHhcCCCCcEEEECCCCchhhHHH
Confidence 123344578889999999999986432 222222 146777899999999999887777666
Q ss_pred HHHH
Q psy11160 166 IMNV 169 (598)
Q Consensus 166 ~~~~ 169 (598)
+.+.
T Consensus 294 L~~A 297 (385)
T PRK07574 294 VVRA 297 (385)
T ss_pred HHHH
Confidence 6553
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-05 Score=84.55 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=77.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..|.. .|.+|.+||++....+....
T Consensus 199 gktVGIVG~G~IG~~vA~~L~a---------------------------fG~~V~~~d~~~~~~~~~~~----------- 240 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKP---------------------------FNCNLLYHDRLKMDPELEKE----------- 240 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHH---------------------------CCCEEEEECCCCcchhhHhh-----------
Confidence 3689999999999999999998 78999999987432222111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+.....++++.+++||+|++++|... +...+. -+.+...++++.++|+.+....-..+
T Consensus 241 --------~g~~~~~~l~ell~~sDvV~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~ 299 (386)
T PLN03139 241 --------TGAKFEEDLDAMLPKCDVVVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQ 299 (386)
T ss_pred --------cCceecCCHHHHHhhCCEEEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHH
Confidence 123344678889999999999987542 222222 25677889999999998887776666
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+.+
T Consensus 300 AL~~ 303 (386)
T PLN03139 300 AVAD 303 (386)
T ss_pred HHHH
Confidence 5555
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.2e-05 Score=80.78 Aligned_cols=128 Identities=23% Similarity=0.289 Sum_probs=83.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+||+|||+|.||.++|..|.. +..+.++.++|+++++.+-... ++.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-------------------------~~~~~el~LiDi~~~~~~G~a~--------DL~~ 47 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-------------------------QGLGSELVLIDINEEKAEGVAL--------DLSH 47 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-------------------------ccccceEEEEEcccccccchhc--------chhh
Confidence 589999999999999999976 2245699999999554432110 1111
Q ss_pred HHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 86 VVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
...-. ...++..+.+++ ++++||+|+|+.+-|.++..++.+ ...+.+.+++..++|.+..++..++| -|-|..+.
T Consensus 48 ~~~~~~~~~~i~~~~~y~-~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~ 124 (313)
T COG0039 48 AAAPLGSDVKITGDGDYE-DLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDIL 124 (313)
T ss_pred cchhccCceEEecCCChh-hhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHH
Confidence 10000 012233333465 799999999999888887654322 23456677777888888887666655 46777777
Q ss_pred HHHHHH
Q psy11160 164 ESIMNV 169 (598)
Q Consensus 164 ~~~~~~ 169 (598)
-.++..
T Consensus 125 ty~~~k 130 (313)
T COG0039 125 TYIAMK 130 (313)
T ss_pred HHHHHH
Confidence 666653
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=84.16 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=75.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+.+||+|||+|.||..+|..++. .| .+++++|+++++.+...-.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~---------------------------~~~~~l~L~Di~~~~~~g~~lD-------- 48 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ---------------------------KNLGDVVLYDVIKGVPQGKALD-------- 48 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH---------------------------CCCCeEEEEECCCccchhHHHH--------
Confidence 45799999999999999999988 55 5899999998765431100
Q ss_pred hHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 83 LDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+...... ....+++.++|++ ++++||+||++...|.++..++.+ -..+...+++..+.|.++.++..+++...++
T Consensus 49 l~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~ 125 (319)
T PTZ00117 49 LKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL 125 (319)
T ss_pred HhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH
Confidence 0000000 0112456667887 899999999999766543221100 1112345667778888877665566653333
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=84.60 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=69.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~ 83 (598)
.|||+|+|+|.||+-+|..|++ .|++|++++++.++++.+++ +...+...+-
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~---------------------------~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~ 54 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR---------------------------AGLPVRLILRDRQRLAAYQQAGGLTLVEQGQ 54 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEechHHHHHHhhcCCeEEeeCCc
Confidence 3799999999999999999999 89999999999999998874 3232222111
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
... ..... .+. +.....|+||+||-+. .+.++++.+.+.+.+++.|+
T Consensus 55 ~~~------~~~~~-~~~-~~~~~~D~viv~vK~~---------------~~~~al~~l~~~l~~~t~vv 101 (305)
T PRK05708 55 ASL------YAIPA-ETA-DAAEPIHRLLLACKAY---------------DAEPAVASLAHRLAPGAELL 101 (305)
T ss_pred cee------eccCC-CCc-ccccccCEEEEECCHH---------------hHHHHHHHHHhhCCCCCEEE
Confidence 000 00111 111 1245789999998543 35678889999998887654
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.06 E-value=7e-06 Score=76.60 Aligned_cols=98 Identities=23% Similarity=0.284 Sum_probs=67.6
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVV 87 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~ 87 (598)
|+|+|+|.||..+|..|++ .|++|+++++++ +.+.+++....+..+.-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~---------------------------~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~- 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ---------------------------AGHDVTLVSRSP-RLEAIKEQGLTITGPDGDET- 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH---------------------------TTCEEEEEESHH-HHHHHHHHCEEEEETTEEEE-
T ss_pred CEEECcCHHHHHHHHHHHH---------------------------CCCceEEEEccc-cHHhhhheeEEEEeccccee-
Confidence 7899999999999999999 899999999999 88887754333322210000
Q ss_pred hhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 88 KKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
. .......+..+....+|+||+||... .++++++.+.+.+.+++.|+
T Consensus 52 ---~-~~~~~~~~~~~~~~~~D~viv~vKa~---------------~~~~~l~~l~~~~~~~t~iv 98 (151)
T PF02558_consen 52 ---V-QPPIVISAPSADAGPYDLVIVAVKAY---------------QLEQALQSLKPYLDPNTTIV 98 (151)
T ss_dssp ---E-EEEEEESSHGHHHSTESEEEE-SSGG---------------GHHHHHHHHCTGEETTEEEE
T ss_pred ---c-ccccccCcchhccCCCcEEEEEeccc---------------chHHHHHHHhhccCCCcEEE
Confidence 0 01122233324578899999998553 35778888999999885444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.2e-05 Score=82.49 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=72.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|+|+|.||+-++..|++ .|++|+++-+++. ++++++....+.+.+- +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~---------------------------~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~ 51 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAK---------------------------AGHDVTLLVRSRR-LEALKKKGLRIEDEGG-N 51 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHh---------------------------CCCeEEEEecHHH-HHHHHhCCeEEecCCC-c
Confidence 699999999999999999999 7888999888776 8888875444433221 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
. .....+.+..+....+|+||++|.+. .+.+++..+.+.++++++|+
T Consensus 52 ~------~~~~~~~~~~~~~~~~Dlviv~vKa~---------------q~~~al~~l~~~~~~~t~vl 98 (307)
T COG1893 52 F------TTPVVAATDAEALGPADLVIVTVKAY---------------QLEEALPSLAPLLGPNTVVL 98 (307)
T ss_pred c------ccccccccChhhcCCCCEEEEEeccc---------------cHHHHHHHhhhcCCCCcEEE
Confidence 0 01122333334677999999998654 36888999999999998765
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.8e-05 Score=78.56 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=54.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||+|||+|.||..++..|.. ...+++++ ++|+++++.+.+.+..
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~-------------------------~~~~~el~aV~dr~~~~a~~~a~~~-------- 52 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDR-------------------------GLPGLTLSAVAVRDPQRHADFIWGL-------- 52 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHh-------------------------cCCCeEEEEEECCCHHHHHHHHHhc--------
Confidence 3789999999999999999986 00467776 7899999887765321
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+.....+++++.++++|+|++|+|+.
T Consensus 53 ---------g~~~~~~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 53 ---------RRPPPVVPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred ---------CCCcccCCHHHHhcCCCEEEECCCcH
Confidence 01123567777888999999998764
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.3e-06 Score=81.38 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=81.1
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-------
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK------- 75 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~------- 75 (598)
+.+.+|+|||+|.||+.+|.+-+. .|++|+++|.|+..+.+..+++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~---------------------------sg~~V~l~d~~~~aL~~A~~~I~~sl~rv 61 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAAT---------------------------SGLNVWLVDANEDALSRATKAISSSLKRV 61 (298)
T ss_pred ccccceEEEcccccchhHHHHHHh---------------------------cCCceEEecCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999 8999999999998877654332
Q ss_pred ---CCCC-CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy11160 76 ---LPIY-EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKI 151 (598)
Q Consensus 76 ---~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 151 (598)
.... +.++++++.... .+++.+++..+++++||+||-++-.. ++.=+..++.|-...+++++
T Consensus 62 akKk~~~~~~~~~e~v~~~l-~ri~~~tnv~~~v~dadliiEAivEn-------------~diK~~lF~~l~~~ak~~~i 127 (298)
T KOG2304|consen 62 AKKKKADDPVALEEFVDDTL-DRIKTSTNVSDAVSDADLIIEAIVEN-------------LDIKRKLFKDLDKIAKSSTI 127 (298)
T ss_pred HhhcccCChhhHHHHHHHHH-HHHHHcCCHHHhhhhhHHHHHHHHHh-------------HHHHHHHHHHHHhhcccceE
Confidence 1111 223555554432 35778899999999999999887432 22335677888888888877
Q ss_pred EE
Q psy11160 152 VV 153 (598)
Q Consensus 152 vv 153 (598)
+.
T Consensus 128 l~ 129 (298)
T KOG2304|consen 128 LA 129 (298)
T ss_pred Ee
Confidence 64
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-05 Score=82.28 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=76.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+||+|||+|.||.++|..|+. ++..-++.++|+++++.+....- +.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-------------------------~~l~~el~LiDi~~~~~~g~a~D--------L~~ 84 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-------------------------QDLADELALVDVNPDKLRGEMLD--------LQH 84 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-------------------------CCCCCEEEEEeCCCchhhHHHHH--------HHh
Confidence 699999999999999999987 11224899999998776543310 111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
...-.....++.+++++ .+++||+||++...|.++..++.+ -..+...+++..+.|.++.+++.+++.. -|....-
T Consensus 85 ~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt--NPvdv~t 161 (350)
T PLN02602 85 AAAFLPRTKILASTDYA-VTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS--NPVDVLT 161 (350)
T ss_pred hhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CchHHHH
Confidence 10000012345456776 599999999998877665332111 1223455666677777766555555543 4554443
Q ss_pred HH
Q psy11160 165 SI 166 (598)
Q Consensus 165 ~~ 166 (598)
.+
T Consensus 162 ~~ 163 (350)
T PLN02602 162 YV 163 (350)
T ss_pred HH
Confidence 33
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00025 Score=73.31 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCce
Q psy11160 16 VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNL 95 (598)
Q Consensus 16 vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 95 (598)
||+.+|..|++ .|++|++++++ ++.+.+++....+..++.. . .. ...
T Consensus 2 iG~~~a~~L~~---------------------------~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~--~--~~-~~~ 48 (293)
T TIGR00745 2 VGSLYGAYLAR---------------------------AGHDVTLLARG-EQLEALNQEGLRIVSLGGE--F--QF-RPV 48 (293)
T ss_pred chHHHHHHHHh---------------------------CCCcEEEEecH-HHHHHHHHCCcEEEecCCc--E--EE-ccc
Confidence 79999999999 89999999997 7788887644444322211 0 00 023
Q ss_pred EEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 96 FFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 96 ~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.+++++++ +..+|+||+||++. .++++++.+.+.+.++++|+.
T Consensus 49 ~~~~~~~~-~~~~D~iiv~vKs~---------------~~~~~l~~l~~~l~~~~~iv~ 91 (293)
T TIGR00745 49 SAATSPEE-LPPADLVIITVKAY---------------QTEEAAALLLPLIGKNTKVLF 91 (293)
T ss_pred ccccChhh-cCCCCEEEEeccch---------------hHHHHHHHhHhhcCCCCEEEE
Confidence 44556654 67899999998764 367888899999988877664
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.2e-05 Score=77.51 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=52.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|.||..++..+... ..+++ +.++|+++++.+.+.+..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~-------------------------~~~~elv~v~d~~~~~a~~~a~~~--------- 47 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSG-------------------------RINAELYAFYDRNLEKAENLASKT--------- 47 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcC-------------------------CCCeEEEEEECCCHHHHHHHHHhc---------
Confidence 6999999999999999998870 01355 567999999988776421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
+....+++++.+.++|+|++|+|.
T Consensus 48 ---------~~~~~~~~~ell~~~DvVvi~a~~ 71 (265)
T PRK13304 48 ---------GAKACLSIDELVEDVDLVVECASV 71 (265)
T ss_pred ---------CCeeECCHHHHhcCCCEEEEcCCh
Confidence 123557788777899999999753
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.001 Score=66.74 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=78.7
Q ss_pred CceEEEECCCh--------------------hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGY--------------------VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~--------------------vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
+|||+|.|+|+ -|..||..||. +||+|++.|.|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAe---------------------------AGHDVVLaePn 53 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAE---------------------------AGHDVVLAEPN 53 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHH---------------------------cCCcEEeecCC
Confidence 47999999994 47888999999 99999999987
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q psy11160 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE 144 (598)
Q Consensus 65 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~ 144 (598)
.+-.+. +..++.-+.+.+.++|..++++.+++.++- ||+.+ ..-.+++.|.+
T Consensus 54 ~d~~dd--------------~~w~~vedAGV~vv~dD~eaa~~~Ei~VLF--TPFGk------------~T~~Iarei~~ 105 (340)
T COG4007 54 RDIMDD--------------EHWKRVEDAGVEVVSDDAEAAEHGEIHVLF--TPFGK------------ATFGIAREILE 105 (340)
T ss_pred ccccCH--------------HHHHHHHhcCcEEecCchhhhhcceEEEEe--cccch------------hhHHHHHHHHh
Confidence 543321 111222235678888888899999999998 56632 34567889999
Q ss_pred HcCCCcEEEEecCCchHHH
Q psy11160 145 IATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 145 ~~~~~~ivv~~STv~~~~~ 163 (598)
+++.|.+|....|+||-..
T Consensus 106 hvpEgAVicnTCT~sp~vL 124 (340)
T COG4007 106 HVPEGAVICNTCTVSPVVL 124 (340)
T ss_pred hCcCCcEecccccCchhHH
Confidence 9999999999999988543
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-05 Score=80.73 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=76.6
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH----cCCCCCCCCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN----SNKLPIYEPG 82 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~----~~~~~~~e~~ 82 (598)
||+|||+|.||.++|..|+. ++..-++.++|+++++.+... ... ++..+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-------------------------~~~~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~- 53 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-------------------------LGLFSEIVLIDVNEGVAEGEALDFHHAT-ALTYS- 53 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEeCCcchhhHHHHHHHhhh-ccCCC-
Confidence 79999999999999999988 112248999999877655322 111 11000
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCC--CC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNG--KG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~--~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
....++ +.++ +++++||+||++...|.++..++ .+ -..+.+.+++....|.++.+.+.+++ -|-|
T Consensus 54 --------~~~~i~-~~~y-~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv--vsNP 121 (307)
T cd05290 54 --------TNTKIR-AGDY-DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL--ITNP 121 (307)
T ss_pred --------CCEEEE-ECCH-HHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--ecCc
Confidence 001233 4566 48999999999998877654321 00 12345566677777777775554444 4566
Q ss_pred hHHHHHHHH
Q psy11160 160 VRAAESIMN 168 (598)
Q Consensus 160 ~~~~~~~~~ 168 (598)
..+.-.++.
T Consensus 122 vDv~t~~~~ 130 (307)
T cd05290 122 LDIAVYIAA 130 (307)
T ss_pred HHHHHHHHH
Confidence 666555554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.9e-05 Score=81.42 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=60.9
Q ss_pred ceEEEECCChhHHHHHH--HHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCS--VIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.||.+++. .++.. +. + +|++|++||+++++++......
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~-~~--------------------~--~g~eV~L~Did~e~l~~~~~~~-------- 49 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKT-PE--------------------L--SGSTIALMDIDEERLETVEILA-------- 49 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcC-CC--------------------C--CCCEEEEECCCHHHHHHHHHHH--------
Confidence 48999999999999877 45541 01 1 6899999999999988765421
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
...+... ...+++.|+|+.+++++||+||++++...
T Consensus 50 ~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~~~ 86 (423)
T cd05297 50 KKIVEELGAPLKIEATTDRREALDGADFVINTIQVGG 86 (423)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEecC
Confidence 1222211 12467889999999999999999998754
|
linked to 3D####ucture |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.8e-05 Score=71.27 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=63.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||.|..|...|.+|.+ .|.+|++-.+... ..+..++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrD---------------------------SG~~V~Vglr~~s~s~~~A~~---------- 46 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRD---------------------------SGVNVIVGLREGSASWEKAKA---------- 46 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHH---------------------------CC-EEEEEE-TTCHHHHHHHH----------
T ss_pred CCEEEEECCChHHHHHHHHHHh---------------------------CCCCEEEEecCCCcCHHHHHH----------
Confidence 4689999999999999999999 8999998888755 4444332
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv 158 (598)
.+++ ..+..++++.||+|++.+|.. .-.++. ++|.+.++++++++...-.
T Consensus 47 ---------~Gf~-v~~~~eAv~~aDvV~~L~PD~---------------~q~~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 47 ---------DGFE-VMSVAEAVKKADVVMLLLPDE---------------VQPEVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp ---------TT-E-CCEHHHHHHC-SEEEE-S-HH---------------HHHHHHHHHHHHHS-TT-EEEESSSH
T ss_pred ---------CCCe-eccHHHHHhhCCEEEEeCChH---------------HHHHHHHHHHHhhCCCCCEEEeCCcc
Confidence 1233 356788999999999997643 234454 7899999999999876544
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.5e-05 Score=80.25 Aligned_cols=95 Identities=9% Similarity=0.188 Sum_probs=71.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
++|+|+|+|.+|..+|..|.. .|.+|+++++++++.+.+.+ +..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~---------------------------~G~~V~v~~R~~~~~~~~~~~g~~-------- 196 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSA---------------------------LGARVFVGARSSADLARITEMGLI-------- 196 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHCCCe--------
Confidence 689999999999999999998 78999999999987766542 211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.....++.+.++++|+||.++|.+.- -+...+.++++.++++.++.|-+|-
T Consensus 197 ----------~~~~~~l~~~l~~aDiVint~P~~ii------------------~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 197 ----------PFPLNKLEEKVAEIDIVINTIPALVL------------------TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred ----------eecHHHHHHHhccCCEEEECCChHHh------------------CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 01123456678999999999865421 1234566788999999999988774
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.3e-05 Score=80.36 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=60.2
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||.| .||.|||..|.+ .|+.|++|++.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~---------------------------~gatVtv~~~~------------------- 192 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQ---------------------------AHCSVTVVHSR------------------- 192 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---------------------------CCCEEEEECCC-------------------
Confidence 3689999996 999999999999 89999999753
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
+.++++.+++||+||.+++.|. .+... .+++|.+||+.|+-.
T Consensus 193 --------------t~~l~e~~~~ADIVIsavg~~~--------------~v~~~------~ik~GaiVIDvgin~ 234 (301)
T PRK14194 193 --------------STDAKALCRQADIVVAAVGRPR--------------LIDAD------WLKPGAVVIDVGINR 234 (301)
T ss_pred --------------CCCHHHHHhcCCEEEEecCChh--------------cccHh------hccCCcEEEEecccc
Confidence 1256778899999999998763 12222 278999999988654
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.7e-05 Score=79.23 Aligned_cols=102 Identities=11% Similarity=0.177 Sum_probs=74.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|.+|++||++... .+ .
T Consensus 122 gktvgIiG~G~IG~~vA~~l~a---------------------------fG~~V~~~~r~~~~-----~~--------~- 160 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKA---------------------------FGMNIYAYTRSYVN-----DG--------I- 160 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCCCcc-----cC--------c-
Confidence 3689999999999999987776 68999999987311 11 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.....++++++++||+|++++|....+ ..+. -+.....++++.++|+.|+.++-..+
T Consensus 161 ----------~~~~~~l~ell~~aDiv~~~lp~t~~T-----------~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~ 217 (303)
T PRK06436 161 ----------SSIYMEPEDIMKKSDFVLISLPLTDET-----------RGMI--NSKMLSLFRKGLAIINVARADVVDKN 217 (303)
T ss_pred ----------ccccCCHHHHHhhCCEEEECCCCCchh-----------hcCc--CHHHHhcCCCCeEEEECCCccccCHH
Confidence 011246888999999999998754321 1111 24566778999999999999887777
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+.+.|
T Consensus 218 aL~~aL 223 (303)
T PRK06436 218 DMLNFL 223 (303)
T ss_pred HHHHHH
Confidence 766643
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=78.04 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH--HHHHHHcCCCCC
Q psy11160 2 VQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE--RIRQWNSNKLPI 78 (598)
Q Consensus 2 ~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~~~~~~~~~~ 78 (598)
|+..+||+|||+ |.||.++|..|+.+ .+.++. .-.++.++|+++. +.+....
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~-------------------~~~~~~-~~~el~LiDi~~~~~~~~g~a~----- 55 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASG-------------------DMLGKD-QPVILQLLEIPPALKALEGVVM----- 55 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhh-------------------hhcCCC-CccEEEEEecCCcccccceeeh-----
Confidence 455679999998 99999999988871 000000 1128999999543 2321110
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
++.+...... .+.+.+++..+++++||+||++...|.++..++.+ -..+.+.+++....|.++.+++.+++.-|
T Consensus 56 ---Dl~~~~~~~~-~~~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs- 130 (326)
T PRK05442 56 ---ELDDCAFPLL-AGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG- 130 (326)
T ss_pred ---hhhhhhhhhc-CCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC-
Confidence 1111110000 12344445556899999999998877655332111 12234566777777777775555555544
Q ss_pred CchHHHHHHH
Q psy11160 158 VPVRAAESIM 167 (598)
Q Consensus 158 v~~~~~~~~~ 167 (598)
-|....-.++
T Consensus 131 NPvDv~t~v~ 140 (326)
T PRK05442 131 NPANTNALIA 140 (326)
T ss_pred CchHHHHHHH
Confidence 5555554444
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00029 Score=62.85 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=54.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+||+|||+|.+|......+.. ...+.+++ ++|+++++.+.+.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~-------------------------~~~~~~v~~v~d~~~~~~~~~~~~---------- 45 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLR-------------------------SSPDFEVVAVCDPDPERAEAFAEK---------- 45 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHH-------------------------TTTTEEEEEEECSSHHHHHHHHHH----------
T ss_pred CEEEEECCcHHHHHHHHHHHh-------------------------cCCCcEEEEEEeCCHHHHHHHHHH----------
Confidence 489999999999999988887 11456665 789999999887532
Q ss_pred HHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
.++...+|+++.++ +.|+|+|++|+..
T Consensus 46 --------~~~~~~~~~~~ll~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 46 --------YGIPVYTDLEELLADEDVDAVIIATPPSS 74 (120)
T ss_dssp --------TTSEEESSHHHHHHHTTESEEEEESSGGG
T ss_pred --------hcccchhHHHHHHHhhcCCEEEEecCCcc
Confidence 12346788888887 7899999987653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.2e-05 Score=78.04 Aligned_cols=94 Identities=10% Similarity=0.144 Sum_probs=66.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..|.. .|++|.+||++..... +..
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~a---------------------------fG~~V~~~~~~~~~~~------------~~~- 176 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQT---------------------------WGFPLRCWSRSRKSWP------------GVQ- 176 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCCCCCC------------Cce-
Confidence 689999999999999999998 7999999998653221 110
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
......++++++++||+|++++|... +...+. -+.....++++.++|+.+--+.
T Consensus 177 --------~~~~~~~l~e~l~~aDvvv~~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~v 230 (312)
T PRK15469 177 --------SFAGREELSAFLSQTRVLINLLPNTP-----------ETVGII--NQQLLEQLPDGAYLLNLARGVH 230 (312)
T ss_pred --------eecccccHHHHHhcCCEEEECCCCCH-----------HHHHHh--HHHHHhcCCCCcEEEECCCccc
Confidence 01112467889999999999987532 122222 2456777999999998654433
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00023 Score=78.28 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=58.3
Q ss_pred ceEEEECCChhHHHHHH--HHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCS--VIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.||.+.+. .++. +.. + ++.+|+++|+++++.+....- +
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~-~~~--------------------l--~~~evvLvDid~er~~~~~~l--------~ 50 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILS-VPA--------------------L--RDAEIALMDIDPERLEESEIV--------A 50 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhh-Ccc--------------------C--CCCEEEEECCCHHHHHHHHHH--------H
Confidence 69999999999988776 5553 111 1 678999999999998753211 1
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
...+... ...+++.|+|..+++++||+||+++..+
T Consensus 51 ~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ti~vg 86 (431)
T PRK15076 51 RKLAESLGASAKITATTDRREALQGADYVINAIQVG 86 (431)
T ss_pred HHHHHhcCCCeEEEEECCHHHHhCCCCEEeEeeeeC
Confidence 1122211 1246788999888999999999999775
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=82.24 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=73.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. .|.+|++||++...-.....
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~---------------------------fG~~V~~~d~~~~~~~~~~~----------- 181 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKA---------------------------FGMKVIAYDPYISPERAAQL----------- 181 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEECCCCChhHHHhc-----------
Confidence 3689999999999999999998 79999999985321111111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+.... ++++.+++||+|++++|...... .+. -......++++.++|+.|....=..+
T Consensus 182 ---------g~~~~-~l~ell~~aDiV~l~lP~t~~t~-----------~li--~~~~l~~mk~ga~lIN~aRG~~vde~ 238 (526)
T PRK13581 182 ---------GVELV-SLDELLARADFITLHTPLTPETR-----------GLI--GAEELAKMKPGVRIINCARGGIIDEA 238 (526)
T ss_pred ---------CCEEE-cHHHHHhhCCEEEEccCCChHhh-----------cCc--CHHHHhcCCCCeEEEECCCCceeCHH
Confidence 12333 68889999999999987643211 121 14567788999999998887766665
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 239 aL~~ 242 (526)
T PRK13581 239 ALAE 242 (526)
T ss_pred HHHH
Confidence 5554
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0003 Score=68.00 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=65.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. -|.+|++||++.........
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~---------------------------fG~~V~~~d~~~~~~~~~~~----------- 77 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKA---------------------------FGMRVIGYDRSPKPEEGADE----------- 77 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHH---------------------------TT-EEEEEESSCHHHHHHHH-----------
T ss_pred CCEEEEEEEcCCcCeEeeeeec---------------------------CCceeEEecccCChhhhccc-----------
Confidence 3689999999999999999998 78999999999876652222
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
... -..++++.++.||+|++++|-...+.+ ..+ +.....++++.++|+.+-
T Consensus 78 --------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 78 --------FGV-EYVSLDELLAQADIVSLHLPLTPETRG-----LIN--------AEFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp --------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTT-----SBS--------HHHHHTSTTTEEEEESSS
T ss_pred --------ccc-eeeehhhhcchhhhhhhhhccccccce-----eee--------eeeeeccccceEEEeccc
Confidence 123 345788899999999999874322211 222 345567899999998554
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.8e-05 Score=77.62 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=72.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|||+|||+ |.||.++|..|+. .+ .+++++|++ +. +|.. .+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~---------------------------~~~~~elvLiDi~--~a----~g~a----lD 43 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKL---------------------------NPLVSELALYDIV--NT----PGVA----AD 43 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHh---------------------------CCCCcEEEEEecC--cc----ceee----hH
Confidence 59999999 9999999999988 44 589999998 22 1211 00
Q ss_pred hHHHHhhhcCCceEEe-c--CHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFS-T--DIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~--~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+.+. .....++.+ . |+.+++++||+||++.+.|.++..++.+ -..+.+.+++..+.|.++.++..+++. |-
T Consensus 44 L~~~---~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivv--tN 118 (310)
T cd01337 44 LSHI---NTPAKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILII--SN 118 (310)
T ss_pred hHhC---CCcceEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc--cC
Confidence 1110 011245543 3 3346899999999999988766443211 223455667777777777554444454 44
Q ss_pred chHH
Q psy11160 159 PVRA 162 (598)
Q Consensus 159 ~~~~ 162 (598)
|...
T Consensus 119 PvDv 122 (310)
T cd01337 119 PVNS 122 (310)
T ss_pred chhh
Confidence 4444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=73.66 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=77.2
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHH----HHcCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQ----WNSNKLP 77 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~----~~~~~~~ 77 (598)
-.||+|||+ |.||.++|..|..+ +-|. .. ...+++++|+++ ++.+. +.....+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~----------------~~~~---~~-~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~ 62 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASG----------------ELFG---KD-QPVVLHLLDIPPAMKALEGVAMELEDCAFP 62 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC----------------Cccc---CC-CccEEEEEecCCcccccchHHHHHhhcccc
Confidence 369999999 99999999999871 0000 00 123899999964 22322 2221111
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
. . .+...+++..+++++||+||++.+.|.++..++.+ -..+.+.+++....|.++.+++.+++.-
T Consensus 63 ~------------~-~~~~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv- 128 (323)
T TIGR01759 63 L------------L-AGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV- 128 (323)
T ss_pred c------------c-CCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-
Confidence 1 0 12233344446899999999999887665332111 1223556777778888887745555443
Q ss_pred CCchHHHHHHHH
Q psy11160 157 TVPVRAAESIMN 168 (598)
Q Consensus 157 Tv~~~~~~~~~~ 168 (598)
|-|....-.++.
T Consensus 129 sNPvDv~t~v~~ 140 (323)
T TIGR01759 129 GNPANTNALIAS 140 (323)
T ss_pred CCcHHHHHHHHH
Confidence 466666555544
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=76.72 Aligned_cols=129 Identities=14% Similarity=0.184 Sum_probs=74.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHH----HHcCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQ----WNSNKLPI 78 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~----~~~~~~~~ 78 (598)
+||+|||+ |.||.++|..|+.+ .+.++. .-.++.++|++++. ++. +.....++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-------------------~~~~~~-~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~ 62 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-------------------EMFGPD-QPVILQLLELPQALKALEGVAMELEDCAFPL 62 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-------------------cccCCC-CceEEEEEecCCcccccceeehhhhhccccc
Confidence 69999999 99999999999871 000000 01289999995432 221 12111111
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
. .+...+++..+++++||+||++...|.++..++.+ -..+.+.+++....|.++.+++.+++.- |
T Consensus 63 ------------~-~~~~i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-s 128 (322)
T cd01338 63 ------------L-AEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVV-G 128 (322)
T ss_pred ------------c-CceEEecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-c
Confidence 0 12334444446899999999999887665332111 1223556777777777777544444443 3
Q ss_pred CchHHHHHHHH
Q psy11160 158 VPVRAAESIMN 168 (598)
Q Consensus 158 v~~~~~~~~~~ 168 (598)
-|....-.++.
T Consensus 129 NPvD~~t~~~~ 139 (322)
T cd01338 129 NPCNTNALIAM 139 (322)
T ss_pred CcHHHHHHHHH
Confidence 56655544443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00022 Score=74.62 Aligned_cols=96 Identities=14% Similarity=0.240 Sum_probs=71.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|++|||+|.+|.+++..|.. .|.+|+++|+++++.+...+-..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~---------------------------~Ga~V~v~~r~~~~~~~~~~~G~-------- 196 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA---------------------------LGANVTVGARKSAHLARITEMGL-------- 196 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHcCC--------
Confidence 4799999999999999999998 78999999999887666553100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
......++.+.++++|+||.++|.+. ..+...+.++++.+|++.++-|.|+
T Consensus 197 ---------~~~~~~~l~~~l~~aDiVI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 197 ---------SPFHLSELAEEVGKIDIIFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred ---------eeecHHHHHHHhCCCCEEEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 01111345667889999999975431 1234556788999999988888775
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=81.41 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=73.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC--HHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS--EERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~--~~~~~~~~~~~~~~~e~~~ 83 (598)
++|+|||+|.+|..+|..+.. .|.+|++||+. ++....
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~---------------------------fG~~V~~~d~~~~~~~~~~------------- 178 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKA---------------------------FGMKVLAYDPYISPERAEQ------------- 178 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEECCCCChhHHHh-------------
Confidence 689999999999999999988 78999999984 222211
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.+.....++++.+++||+|++++|....+. .+.. +.....++++.++|+.|....=..
T Consensus 179 ---------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~-----------~li~--~~~l~~mk~ga~lIN~aRG~~vde 236 (525)
T TIGR01327 179 ---------LGVELVDDLDELLARADFITVHTPLTPETR-----------GLIG--AEELAKMKKGVIIVNCARGGIIDE 236 (525)
T ss_pred ---------cCCEEcCCHHHHHhhCCEEEEccCCChhhc-----------cCcC--HHHHhcCCCCeEEEEcCCCceeCH
Confidence 112344578889999999999987542211 1211 345567899999999988777666
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 237 ~aL~~ 241 (525)
T TIGR01327 237 AALYE 241 (525)
T ss_pred HHHHH
Confidence 55554
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=77.61 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=77.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
-||+|||+ |.||..+|..|+. ..+.|.. ++ .+++++|+++++.+...- +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~-------------------~~v~g~~-~~i~~eLvliD~~~~~a~G~am--------D 152 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLAS-------------------GEVFGPD-QPIALKLLGSERSKQALEGVAM--------E 152 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-------------------cccccCC-CCcccEEEEEcCCcchhHHHHH--------H
Confidence 58999999 9999999999998 1222221 24 389999999988775331 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.+...... .++..+++..+++++||+||++...|..+..++.+ -..+.+.+++..+.|.++..++.+|++-| -|..
T Consensus 153 L~daa~~~~-~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs-NPvD 230 (444)
T PLN00112 153 LEDSLYPLL-REVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG-NPCN 230 (444)
T ss_pred HHHhhhhhc-CceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC-CcHH
Confidence 111110001 23444444446899999999999888765432111 12234456666666766544555544433 5555
Q ss_pred HHHHH
Q psy11160 162 AAESI 166 (598)
Q Consensus 162 ~~~~~ 166 (598)
+.-.+
T Consensus 231 v~t~v 235 (444)
T PLN00112 231 TNALI 235 (444)
T ss_pred HHHHH
Confidence 54333
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00027 Score=70.99 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=38.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
|+|+|||+|.+|.++|..|.+ .||+|+++|.+++++++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~---------------------------~g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE---------------------------EGHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh---------------------------CCCceEEEEcCHHHHHHHhh
Confidence 689999999999999999999 89999999999999988443
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00033 Score=73.80 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=71.8
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
||+|||+ |.||.++|..|+. ++...+++++|+++ . .|.. .++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-------------------------~~~~~elvL~Di~~--a----~g~a----~DL~~ 45 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-------------------------QPYVSELSLYDIAG--A----AGVA----ADLSH 45 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-------------------------CCCCcEEEEecCCC--C----cEEE----chhhc
Confidence 7999999 9999999999988 11235899999986 1 1211 01111
Q ss_pred HHhhhcCCceEEe-c--CHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 86 VVKKTRDVNLFFS-T--DIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 86 ~~~~~~~~~~~~~-~--~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.. ...+++.+ . ++.+++++||+||++.+.|..+..++.+ -..+.+.+++..+.|.++.++..+++. |-|..
T Consensus 46 ~~---~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivv--sNPvD 120 (312)
T TIGR01772 46 IP---TAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVI--TNPVN 120 (312)
T ss_pred CC---cCceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEe--cCchh
Confidence 00 11235542 2 2346899999999999888765432211 233455677777778777555555554 44554
Q ss_pred H
Q psy11160 162 A 162 (598)
Q Consensus 162 ~ 162 (598)
+
T Consensus 121 v 121 (312)
T TIGR01772 121 S 121 (312)
T ss_pred h
Confidence 3
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0004 Score=75.02 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=74.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEE--eCCHHHHHHHHcCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVV--DKSEERIRQWNSNKLPI 78 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~--d~~~~~~~~~~~~~~~~ 78 (598)
-||+|||+ |.||..+|..|+.. ++ .+ +.+.++ |+++++.+....
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~----------------------~l--~~~~~ei~L~L~diD~~~~~a~g~a~----- 95 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG----------------------EV--FGQDQPIALKLLGSERSKEALEGVAM----- 95 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc----------------------cc--cCCCCceEEEEeccCccchhhhHHHH-----
Confidence 58999999 99999999999871 01 12 234445 888888764331
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
++.+...... .++..+++..+++++||+||++...|..+..++.+ -..+.+.+++....|.++.+++.+|+.-|
T Consensus 96 ---DL~d~a~~~~-~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs- 170 (387)
T TIGR01757 96 ---ELEDSLYPLL-REVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG- 170 (387)
T ss_pred ---HHHHhhhhhc-CceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC-
Confidence 1111110001 23454444446899999999999888765332111 12234556666777777775666555544
Q ss_pred CchHHH
Q psy11160 158 VPVRAA 163 (598)
Q Consensus 158 v~~~~~ 163 (598)
-|..+.
T Consensus 171 NPvDv~ 176 (387)
T TIGR01757 171 NPCNTN 176 (387)
T ss_pred CcHHHH
Confidence 555554
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00059 Score=72.15 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH--HHHcCCCCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR--QWNSNKLPIYE 80 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~--~~~~~~~~~~e 80 (598)
++.||+|||+ |.||..+|..|+. ++...+++++|++...-+ .++...
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~-------------------------~~~~~elvL~Di~~~~g~a~Dl~~~~----- 56 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQ-------------------------NPHVSELSLYDIVGAPGVAADLSHID----- 56 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhc-------------------------CCCCCEEEEEecCCCcccccchhhcC-----
Confidence 5679999999 9999999999986 113479999999321111 111100
Q ss_pred CChHHHHhhhcCCceEEecCH---HHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDI---KSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
....+..++|+ .+++++||+||++...|..+..++.+ -..+.+.++++++.+.++- +.. +|+-+
T Consensus 57 ----------~~~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~-iviv~ 124 (321)
T PTZ00325 57 ----------TPAKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKA-IVGIV 124 (321)
T ss_pred ----------cCceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCe-EEEEe
Confidence 01234434342 46899999999999887654221100 1112223444444444442 233 44457
Q ss_pred CCchHHHHHHH
Q psy11160 157 TVPVRAAESIM 167 (598)
Q Consensus 157 Tv~~~~~~~~~ 167 (598)
|-|.+..-.++
T Consensus 125 SNPvdv~~~~~ 135 (321)
T PTZ00325 125 SNPVNSTVPIA 135 (321)
T ss_pred cCcHHHHHHHH
Confidence 77777654444
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=73.94 Aligned_cols=74 Identities=19% Similarity=0.356 Sum_probs=58.7
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEe-CCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVD-KSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d-~~~~~~~~~~~~~~~~~e~~ 82 (598)
..+|+||| .|.||.|||..|.+ .|++|++|+ ++.
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~---------------------------~g~tVtv~~~rT~----------------- 193 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLA---------------------------ANATVTIAHSRTR----------------- 193 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHh---------------------------CCCEEEEECCCCC-----------------
Confidence 36899999 99999999999999 899999995 321
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
++++++++||+||.|++.|. .+.+. .+++|.+||+.++-.
T Consensus 194 -----------------~l~e~~~~ADIVIsavg~~~--------------~v~~~------~lk~GavVIDvGin~ 233 (296)
T PRK14188 194 -----------------DLPAVCRRADILVAAVGRPE--------------MVKGD------WIKPGATVIDVGINR 233 (296)
T ss_pred -----------------CHHHHHhcCCEEEEecCChh--------------hcchh------eecCCCEEEEcCCcc
Confidence 34667889999999998763 22222 278999999987653
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00033 Score=75.64 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=72.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|.+||...... .+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a---------------------------~G~~V~~~Dp~~~~~----~~---------- 154 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRG---------------------------LGWKVLVCDPPRQEA----EG---------- 154 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEECCccccc----cc----------
Confidence 3689999999999999999998 799999999753211 01
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.. ...++++.+++||+|++++|--.. + ......+. -+.....++++.++|+.|..+.-..+
T Consensus 155 ---------~~-~~~~l~ell~~aDiV~lh~Plt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVde~ 215 (381)
T PRK00257 155 ---------DG-DFVSLERILEECDVISLHTPLTKE--G-----EHPTRHLL--DEAFLASLRPGAWLINASRGAVVDNQ 215 (381)
T ss_pred ---------Cc-cccCHHHHHhhCCEEEEeCcCCCC--c-----cccccccC--CHHHHhcCCCCeEEEECCCCcccCHH
Confidence 01 124678889999999999874211 0 00011111 13456678999999999988776666
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+.+
T Consensus 216 AL~~ 219 (381)
T PRK00257 216 ALRE 219 (381)
T ss_pred HHHH
Confidence 6655
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0066 Score=61.75 Aligned_cols=67 Identities=18% Similarity=0.432 Sum_probs=50.6
Q ss_pred CCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchH
Q psy11160 54 PNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLK 133 (598)
Q Consensus 54 ~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~ 133 (598)
.-++|+++++++++.+.+.+. -+...+.+..+++++||+||+||+ |.
T Consensus 8 ~~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~-------------- 54 (245)
T TIGR00112 8 AAYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ-------------- 54 (245)
T ss_pred CCCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------
Confidence 347999999999998887542 023456777778899999999997 53
Q ss_pred HHHHHHHHHHHHcCCCcEEE
Q psy11160 134 YVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 134 ~~~~~~~~i~~~~~~~~ivv 153 (598)
.+.+++..+.+.+.++++||
T Consensus 55 ~i~~vl~~l~~~~~~~~~iv 74 (245)
T TIGR00112 55 DLEEVLSELKSEKGKDKLLI 74 (245)
T ss_pred HHHHHHHHHhhhccCCCEEE
Confidence 47788888887776666655
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00054 Score=71.44 Aligned_cols=108 Identities=17% Similarity=0.277 Sum_probs=77.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH------HH-HHHHHcC-CCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE------ER-IRQWNSN-KLP 77 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~------~~-~~~~~~~-~~~ 77 (598)
.||+|||.|.||+++|..+...+..++ - --.+|..|-..+ ++ -+-+|+. .+.
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~-----------------~---f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~ 81 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFP-----------------I---FDPQVRMWVFEEEINGEAEKLTEIINSRHENV 81 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhcc-----------------c---cCceeeEEEeccccCChhHHHHHHhccccccc
Confidence 589999999999999999988332221 0 123565554432 22 2335543 445
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
-|.|+.+ .+.++.+.+|+.+++.+||+++..+|-. .+.+++++|..+++++...|-
T Consensus 82 KYlpg~~------lP~NvvAv~dl~ea~~dADilvf~vPhQ---------------f~~~ic~~l~g~vk~~~~aIS 137 (372)
T KOG2711|consen 82 KYLPGIK------LPENVVAVPDLVEAAKDADILVFVVPHQ---------------FIPRICEQLKGYVKPGATAIS 137 (372)
T ss_pred cccCCcc------CCCCeEecchHHHHhccCCEEEEeCChh---------------hHHHHHHHHhcccCCCCeEEE
Confidence 5666642 3568999999999999999999998764 478899999999999887753
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00064 Score=71.78 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=56.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|||+|.+|..++..+.. .+...+|++|++++++.+.+.+..
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~-------------------------~~~~~~V~V~~Rs~~~a~~~a~~~--------- 170 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHAS-------------------------VRPIKQVRVWGRDPAKAEALAAEL--------- 170 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHh-------------------------cCCCCEEEEEcCCHHHHHHHHHHH---------
Confidence 3689999999999999987765 114579999999999998876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.+ .........++++++.+||+|+.|++.
T Consensus 171 ---~~-~g~~~~~~~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 171 ---RA-QGFDAEVVTDLEAAVRQADIISCATLS 199 (314)
T ss_pred ---Hh-cCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence 00 011255678888899999999877654
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00077 Score=71.07 Aligned_cols=100 Identities=16% Similarity=0.266 Sum_probs=66.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||..++..|.. .| .+|+++++++++.+.+.+...
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~---------------------------~g~~~V~v~~r~~~ra~~la~~~g------- 223 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAA---------------------------KGVAEITIANRTYERAEELAKELG------- 223 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHH---------------------------cCCCEEEEEeCCHHHHHHHHHHcC-------
Confidence 4789999999999999999987 44 789999999998877664210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIA-TDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~ivv~~STv~~~~ 162 (598)
.......+..+++.++|+||.|++.|. . ......+.+.. .++.++++-| +|...
T Consensus 224 ---------~~~~~~~~~~~~l~~aDvVi~at~~~~--------------~-~~~~~~~~~~~~~~~~~viDla-vPrdi 278 (311)
T cd05213 224 ---------GNAVPLDELLELLNEADVVISATGAPH--------------Y-AKIVERAMKKRSGKPRLIVDLA-VPRDI 278 (311)
T ss_pred ---------CeEEeHHHHHHHHhcCCEEEECCCCCc--------------h-HHHHHHHHhhCCCCCeEEEEeC-CCCCC
Confidence 011111345667889999999987663 1 22222332222 2466777766 66554
Q ss_pred H
Q psy11160 163 A 163 (598)
Q Consensus 163 ~ 163 (598)
.
T Consensus 279 ~ 279 (311)
T cd05213 279 E 279 (311)
T ss_pred c
Confidence 3
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00037 Score=73.86 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=74.2
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCCCCCh
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~e~~~ 83 (598)
||+|||+ |.||..+|..|+.. ++ |.. . ..+++.++|+++ ++.+... -++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~--~~--------------~~~---~-~~~~l~L~Di~~~~~~~~g~~--------~Dl 53 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG--EL--------------FGD---D-QPVILHLLDIPPAMKALEGVV--------MEL 53 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC--Cc--------------cCC---C-CceEEEEEecCCccCccceee--------eeh
Confidence 8999999 99999999999871 00 000 0 234799999987 4332111 011
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+...... .....+.+..+++++||+||++...|..+..++.+ -..+.+.+++....|.++..++.+++.- |-|...
T Consensus 54 ~d~~~~~~-~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 54 QDCAFPLL-KGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred hhhccccc-CCcEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 11110000 11234445557899999999999887665432111 1224556777777777776444444433 455555
Q ss_pred HHHH
Q psy11160 163 AESI 166 (598)
Q Consensus 163 ~~~~ 166 (598)
.-.+
T Consensus 132 ~t~~ 135 (323)
T cd00704 132 NALI 135 (323)
T ss_pred HHHH
Confidence 4333
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00093 Score=70.89 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=71.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|.+|...+..+.. ..+..+|.+||+++++.+.+.+..
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~-------------------------~~~~~~v~V~~r~~~~~~~~~~~~--------- 173 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSR-------------------------VFDLEEVSVYCRTPSTREKFALRA--------- 173 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEECCCHHHHHHHHHHH---------
Confidence 3689999999999998888776 114579999999999998776421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+ .......+.++++++++||+|++|+|... |- +. .+.+++|..|..-++-.|+.
T Consensus 174 ---~~-~g~~v~~~~~~~eav~~aDiVitaT~s~~----------P~---~~------~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 174 ---SD-YEVPVRAATDPREAVEGCDILVTTTPSRK----------PV---VK------ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred ---Hh-hCCcEEEeCCHHHHhccCCEEEEecCCCC----------cE---ec------HHHcCCCCEEEecCCCCccc
Confidence 00 01135667899999999999999976532 11 11 23568898887666555544
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00035 Score=72.27 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=59.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||. |.||.|||..|.+ +|+.|++|..
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~---------------------------~gatVtv~~s-------------------- 190 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLD---------------------------KNATVTLTHS-------------------- 190 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHH---------------------------CCCEEEEECC--------------------
Confidence 368999999 9999999999999 8999999821
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.|.++++.+++||+||.+++.|.. +.. ..+++|.+||+.|+-.
T Consensus 191 -------------~t~~l~~~~~~ADIVI~avg~~~~--------------v~~------~~ik~GavVIDvgin~ 233 (284)
T PRK14179 191 -------------RTRNLAEVARKADILVVAIGRGHF--------------VTK------EFVKEGAVVIDVGMNR 233 (284)
T ss_pred -------------CCCCHHHHHhhCCEEEEecCcccc--------------CCH------HHccCCcEEEEeccee
Confidence 023567788999999999988741 222 2378999999987654
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0023 Score=66.72 Aligned_cols=164 Identities=17% Similarity=0.156 Sum_probs=112.2
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
+++|+|+| .|.|. +.+++.|.+.|++|..|-.--... +. .++..+.+...+++++|
T Consensus 1 ~~~~~v~g-------gd~r~---~~~~~~l~~~g~~v~~~g~~~~~~-------------~~-~~~~~~~~~~~~~~~~~ 56 (287)
T TIGR02853 1 GIHIAVIG-------GDARQ---LELIRKLEELDAKISLIGFDQLED-------------GF-TGAVKCELLELDLTTLD 56 (287)
T ss_pred CcEEEEEc-------ccHHH---HHHHHHHHHCCCEEEEEecccccc-------------cc-ccceeecchhhhhccCC
Confidence 46899998 67764 889999999999999986421100 00 13456677788899999
Q ss_pred EEEEEeec--cc------hhh--ccH-HHHHhccCCCcEEEecCCCCChh-hhhhccceee------ec-cchhhhHHHH
Q psy11160 474 AIVVCTEW--DE------FVT--LDY-KRIYEGMMKPAYIFDGRKILNHD-ALLDIGFNVH------TV-IDLNEYQKTR 534 (598)
Q Consensus 474 alii~t~~--~~------f~~--ld~-~~l~~~m~~~~iI~D~r~i~d~~-~~~~~G~~y~------~v-~~iN~~~~~~ 534 (598)
++|++..- ++ |.+ +.+ ..+.+.+..-.+++-|.+-.+-+ ..++.|+.+. .+ ...+...-+.
T Consensus 57 ~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ 136 (287)
T TIGR02853 57 VVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKGHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEG 136 (287)
T ss_pred EEEECCccccCCceEecccccCCccccHHHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHH
Confidence 99998762 11 111 112 23444455555778887776655 6777888665 22 2234445566
Q ss_pred HHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCC
Q psy11160 535 FSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK 591 (598)
Q Consensus 535 ~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~ 591 (598)
.+..+++..+.++.+++|+|+|+..= ...+++.|...|++|.++|..
T Consensus 137 ai~~al~~~~~~l~gk~v~IiG~G~i----------G~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 137 AIMMAIEHTDFTIHGSNVMVLGFGRT----------GMTIARTFSALGARVFVGARS 183 (287)
T ss_pred HHHHHHHhcCCCCCCCEEEEEcChHH----------HHHHHHHHHHCCCEEEEEeCC
Confidence 66666655556789999999999653 378999999999999999864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00071 Score=71.62 Aligned_cols=115 Identities=14% Similarity=0.167 Sum_probs=70.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH--HHHcCCCCCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR--QWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~--~~~~~~~~~~e~ 81 (598)
..||+|||+ |.||..+|..|+. ++...++.++|+++..-+ .++....
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~-------------------------~~~~~el~L~Di~~~~g~a~Dl~~~~~----- 67 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKM-------------------------NPLVSELHLYDIANTPGVAADVSHINT----- 67 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh-------------------------CCCCCEEEEEecCCCCeeEchhhhCCc-----
Confidence 369999999 9999999999997 112358999999871100 1111100
Q ss_pred ChHHHHhhhcCCceEE---ecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 82 GLDEVVKKTRDVNLFF---STDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~---~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
...+.. ++|+.+++++||+||++...|..+..++.+ ...+...++++.+.+.++.++..+++ +|
T Consensus 68 ----------~~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aiviv--vS 135 (323)
T PLN00106 68 ----------PAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNI--IS 135 (323)
T ss_pred ----------CceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE--eC
Confidence 012332 344567899999999999887654322111 12345566666777777664443333 55
Q ss_pred CchH
Q psy11160 158 VPVR 161 (598)
Q Consensus 158 v~~~ 161 (598)
-|..
T Consensus 136 NPvD 139 (323)
T PLN00106 136 NPVN 139 (323)
T ss_pred CCcc
Confidence 5654
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00062 Score=72.22 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=75.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.||+|+|+ |++|..++..|... +-| +. +.+.+|.++|+++.. +.+ .|.. -++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~----------------~~~---~~-~~~~el~L~D~~~~~-~~~-~g~~----~Dl~ 56 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG----------------DVF---GP-DQPVILHLLDIPPAL-KAL-EGVV----MELQ 56 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC----------------ccc---CC-CCCcEEEEEEcCCcc-ccc-ccee----eehh
Confidence 58999999 99999999999871 000 00 034699999996531 111 1210 0111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCC-CCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGK-GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+.... ...+++.+.++.+++++||+||++...|.....++. ....+.+.+++....|.++.+++.++++-| -|....
T Consensus 57 d~~~~-~~~~~~~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~~ 134 (325)
T cd01336 57 DCAFP-LLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANTN 134 (325)
T ss_pred hcccc-ccCCceecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHHH
Confidence 10000 012345567776789999999999877654322110 012344556677777888776555554433 355444
Q ss_pred HHHH
Q psy11160 164 ESIM 167 (598)
Q Consensus 164 ~~~~ 167 (598)
-.++
T Consensus 135 t~~~ 138 (325)
T cd01336 135 ALIL 138 (325)
T ss_pred HHHH
Confidence 3333
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00097 Score=72.92 Aligned_cols=100 Identities=11% Similarity=0.131 Sum_probs=71.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|++||+++... .
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~---------------------------fGm~V~~~d~~~~~~----~------------ 188 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAES---------------------------LGMRVYFYDIEDKLP----L------------ 188 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEECCCcccc----c------------
Confidence 689999999999999999888 689999999853210 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.......++++.++.||+|++++|-... ...+. -+.....++++.++|+.|....=..+.
T Consensus 189 -------~~~~~~~~l~ell~~sDiVslh~Plt~~-----------T~~li--~~~~l~~mk~ga~lIN~aRG~~vde~a 248 (409)
T PRK11790 189 -------GNARQVGSLEELLAQSDVVSLHVPETPS-----------TKNMI--GAEELALMKPGAILINASRGTVVDIDA 248 (409)
T ss_pred -------CCceecCCHHHHHhhCCEEEEcCCCChH-----------Hhhcc--CHHHHhcCCCCeEEEECCCCcccCHHH
Confidence 1123445788999999999999864321 11121 134566789999999988776655555
Q ss_pred HHH
Q psy11160 166 IMN 168 (598)
Q Consensus 166 ~~~ 168 (598)
+..
T Consensus 249 L~~ 251 (409)
T PRK11790 249 LAD 251 (409)
T ss_pred HHH
Confidence 554
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=69.17 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=83.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
||+|.|||+|.||.+.|..|+. +| .+|++.||+.++.+++.....+ .+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~---------------------------~~d~~V~iAdRs~~~~~~i~~~~~~----~v 49 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQ---------------------------NGDGEVTIADRSKEKCARIAELIGG----KV 49 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHh---------------------------CCCceEEEEeCCHHHHHHHHhhccc----cc
Confidence 4789999999999999999999 67 8999999999999988643111 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+. ..++ ..-.....+++++.|+||.|.|-+. +.+.+++ .++.+.-+++.|-..+-.
T Consensus 50 ~~---~~vD--~~d~~al~~li~~~d~VIn~~p~~~-----------~~~i~ka-------~i~~gv~yvDts~~~~~~- 105 (389)
T COG1748 50 EA---LQVD--AADVDALVALIKDFDLVINAAPPFV-----------DLTILKA-------CIKTGVDYVDTSYYEEPP- 105 (389)
T ss_pred ee---EEec--ccChHHHHHHHhcCCEEEEeCCchh-----------hHHHHHH-------HHHhCCCEEEcccCCchh-
Confidence 00 0000 0011234567899999999987543 2222222 233566667666655543
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHH
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIM 222 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~ 222 (598)
.++.. +.-+.|.+.+.++=+-||-+-.+.
T Consensus 106 ~~~~~------------------------------~a~~Agit~v~~~G~dPGi~nv~a 134 (389)
T COG1748 106 WKLDE------------------------------EAKKAGITAVLGCGFDPGITNVLA 134 (389)
T ss_pred hhhhH------------------------------HHHHcCeEEEcccCcCcchHHHHH
Confidence 32222 112346677788888888765443
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00099 Score=70.56 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=66.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC-CHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK-SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~-~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++++|||+|.+|..+|..+.. -|.+|++||+ ++.......
T Consensus 142 gkTvGIiG~G~IG~~va~~l~a---------------------------fgm~v~~~d~~~~~~~~~~~----------- 183 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKA---------------------------FGMKVIGYDPYSPRERAGVD----------- 183 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEECCCCchhhhccc-----------
Confidence 3689999999999999999998 7999999999 333222111
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
......++++.++.||+|++.+|-..++ ..+.. ++-...++++.++|+.|--+.
T Consensus 184 ----------~~~~~~~Ld~lL~~sDiv~lh~PlT~eT-----------~g~i~--~~~~a~MK~gailIN~aRG~v 237 (324)
T COG0111 184 ----------GVVGVDSLDELLAEADILTLHLPLTPET-----------RGLIN--AEELAKMKPGAILINAARGGV 237 (324)
T ss_pred ----------cceecccHHHHHhhCCEEEEcCCCCcch-----------hcccC--HHHHhhCCCCeEEEECCCcce
Confidence 1234467888999999999998653222 11211 234557889999998665443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=59.63 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=66.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|.+||+| -|..+|..|++ .|++|+++|+|++.++.+++.......
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~---------------------------~G~~ViaIDi~~~aV~~a~~~~~~~v~---- 64 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKE---------------------------SGFDVIVIDINEKAVEKAKKLGLNAFV---- 64 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHhCCeEEE----
Confidence 3689999999 99999999999 899999999999999987754222110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
..+ +..+++ .-++||+|.-+=|.| .+...+..+++...-..+|.--|
T Consensus 65 --------dDl-f~p~~~-~y~~a~liysirpp~---------------el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 65 --------DDL-FNPNLE-IYKNAKLIYSIRPPR---------------DLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred --------CcC-CCCCHH-HHhcCCEEEEeCCCH---------------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 234443 568999988886654 24555666777776666665333
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0062 Score=59.18 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=81.4
Q ss_pred eEEEECCChhHHHHHHH-HHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 7 HICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
||+|||+|.+-.+.-.. +....+.+ .+-+++++|+|+++++....- .+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l----------------------~~~ei~L~Did~~RL~~~~~~--------~~~ 50 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEEL----------------------SGSEIVLMDIDEERLEIVERL--------ARR 50 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTS----------------------TEEEEEEE-SCHHHHHHHHHH--------HHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccC----------------------CCcEEEEEcCCHHHHHHHHHH--------HHH
Confidence 79999999988875432 33312222 456999999999999865420 112
Q ss_pred HHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecCCchHHH
Q psy11160 86 VVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~STv~~~~~ 163 (598)
++++. .+-++..|+|.++|+++||+||.++...- ...+..-+.|. ++-|..= +.+++-|.|..
T Consensus 51 ~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg-------------~~~r~~De~Ip--~k~Gi~~~~~eT~G~GG~~ 115 (183)
T PF02056_consen 51 MVEEAGADLKVEATTDRREALEGADFVINQIRVGG-------------LEAREIDEEIP--LKYGIVGTIQETVGPGGFF 115 (183)
T ss_dssp HHHHCTTSSEEEEESSHHHHHTTESEEEE---TTH-------------HHHHHHHHHTG--GCCTTT-BTTSSSTHHHHH
T ss_pred HHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeecc-------------hHHHHHHHHHH--HHhCCccccccccCccHHH
Confidence 22221 23468889999999999999999974321 01222222232 2222222 35566666666
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccch
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 216 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~g 216 (598)
..+-. +..+.+-++.|.+.+ |+.+++. -|-|.+
T Consensus 116 ~alRt------------------ipv~~~ia~~i~~~~-PdAw~iN-ytNP~~ 148 (183)
T PF02056_consen 116 RALRT------------------IPVMLDIARDIEELC-PDAWLIN-YTNPMG 148 (183)
T ss_dssp HHHHH------------------HHHHHHHHHHHHHHT-TTSEEEE--SSSHH
T ss_pred HHHhh------------------HHHHHHHHHHHHHhC-CCcEEEe-ccChHH
Confidence 55443 455666677777665 4555443 444543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00091 Score=71.60 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=65.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. .|.+|++||++..+......+ +..+...+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~a---------------------------fG~~V~~~dr~~~~~~~~~~~---~~~~~~~~ 209 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRP---------------------------FGVKLLATRRSWTSEPEDGLL---IPNGDVDD 209 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhh---------------------------CCCEEEEECCCCChhhhhhhc---cccccccc
Confidence 689999999999999999988 789999999973321111000 00001111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
+.. ... ...++++++++||+|++++|....+. .+. -+.....++++.++|+.+-
T Consensus 210 ~~~----~~~-~~~~L~ell~~aDiVvl~lPlt~~T~-----------~li--~~~~l~~Mk~ga~lINvaR 263 (347)
T PLN02928 210 LVD----EKG-GHEDIYEFAGEADIVVLCCTLTKETA-----------GIV--NDEFLSSMKKGALLVNIAR 263 (347)
T ss_pred ccc----ccC-cccCHHHHHhhCCEEEECCCCChHhh-----------ccc--CHHHHhcCCCCeEEEECCC
Confidence 100 001 23478889999999999987432211 111 1456677899999998653
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00087 Score=72.30 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=67.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. -|.+|.+||..... .+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a---------------------------~G~~V~~~dp~~~~-----~~---------- 153 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEA---------------------------LGIKTLLCDPPRAD-----RG---------- 153 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCcccc-----cc----------
Confidence 3689999999999999999998 79999999964211 01
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.... ..++++.+++||+|++.+|-... + ......+ .-+.....++++.++|+.|--+.=..+
T Consensus 154 --------~~~~-~~~L~ell~~sDiI~lh~PLt~~--g-----~~~T~~l--i~~~~l~~mk~gailIN~aRG~vVDe~ 215 (378)
T PRK15438 154 --------DEGD-FRSLDELVQEADILTFHTPLFKD--G-----PYKTLHL--ADEKLIRSLKPGAILINACRGAVVDNT 215 (378)
T ss_pred --------cccc-cCCHHHHHhhCCEEEEeCCCCCC--c-----ccccccc--cCHHHHhcCCCCcEEEECCCchhcCHH
Confidence 0001 24678889999999999763221 0 0000011 113455678999999987655443333
Q ss_pred HHH
Q psy11160 165 SIM 167 (598)
Q Consensus 165 ~~~ 167 (598)
.+.
T Consensus 216 AL~ 218 (378)
T PRK15438 216 ALL 218 (378)
T ss_pred HHH
Confidence 333
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=69.54 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCCCCCCh
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~~e~~~ 83 (598)
|||+|||+ |.+|..+|..+... +..+++++++|+++.. .+. ..+.+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~------------------------~~~~~el~L~d~~~~~-----~g~alDl~~~~- 50 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ------------------------LPAGSELSLYDIAPVT-----PGVAVDLSHIP- 50 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC------------------------CCCccEEEEEecCCCC-----cceehhhhcCC-
Confidence 69999999 99999999988550 1135799999997532 111 0110000
Q ss_pred HHHHhhhcCCceEE--ecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFF--STDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
....++. .+++.++++++|+||+|.+.+.++..++.+ -..+.+.+++.++.+.++. ++.+ ++.+|-|.
T Consensus 51 -------~~~~i~~~~~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~i-vivvsNP~ 121 (312)
T PRK05086 51 -------TAVKIKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKAC-IGIITNPV 121 (312)
T ss_pred -------CCceEEEeCCCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeE-EEEccCch
Confidence 0012332 356566899999999999887654321100 0112224444555555553 3333 33467777
Q ss_pred HHHH
Q psy11160 161 RAAE 164 (598)
Q Consensus 161 ~~~~ 164 (598)
.+.-
T Consensus 122 D~~t 125 (312)
T PRK05086 122 NTTV 125 (312)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00058 Score=71.61 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=70.7
Q ss_pred EECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh
Q psy11160 10 CIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKK 89 (598)
Q Consensus 10 viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~ 89 (598)
|||+|.||.++|..|+. ++-.-++.++|+++++.+....- +.+...
T Consensus 1 iIGaG~VG~~~a~~l~~-------------------------~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~- 46 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-------------------------QGIADEIVLIDINKDKAEGEAMD--------LQHAAS- 46 (299)
T ss_pred CCCcCHHHHHHHHHHHh-------------------------cCCCCEEEEEeCCCChhhHHHHH--------HHHhhc-
Confidence 69999999999999988 11224899999987765543210 000000
Q ss_pred hcCCceEEe-cCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHHHH
Q psy11160 90 TRDVNLFFS-TDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIM 167 (598)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~~ 167 (598)
....+.+.+ .++ +++++||+||++...|.++..++.+ -..+...+++..+.|.++.+.+.+++. |-|....-.++
T Consensus 47 ~~~~~~~i~~~~~-~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivv--sNP~d~~t~~~ 123 (299)
T TIGR01771 47 FLPTPKKIRSGDY-SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVA--TNPVDILTYVA 123 (299)
T ss_pred ccCCCeEEecCCH-HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCHHHHHHHHH
Confidence 001122333 455 5899999999999888765432211 122345566677777776544444444 34554443333
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0041 Score=59.07 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=57.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH-cCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN-SNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-~~~~~~~e~~~~ 84 (598)
+++.|+|.|.+|..+|..|.. .|-+|+++|+||-+.-+.. .|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~---------------------------~Ga~V~V~e~DPi~alqA~~dG---------- 66 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRG---------------------------LGARVTVTEIDPIRALQAAMDG---------- 66 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHH---------------------------TT-EEEEE-SSHHHHHHHHHTT----------
T ss_pred CEEEEeCCCcccHHHHHHHhh---------------------------CCCEEEEEECChHHHHHhhhcC----------
Confidence 689999999999999999999 7999999999997654433 33
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.+. .+.++++..+|++|.+++...- + -.+..+.++++.++......
T Consensus 67 ----------f~v-~~~~~a~~~adi~vtaTG~~~v--------------i---~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 67 ----------FEV-MTLEEALRDADIFVTATGNKDV--------------I---TGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp -----------EE-E-HHHHTTT-SEEEE-SSSSSS--------------B----HHHHHHS-TTEEEEESSSS
T ss_pred ----------cEe-cCHHHHHhhCCEEEECCCCccc--------------c---CHHHHHHhcCCeEEeccCcC
Confidence 333 3577899999998888654310 0 12344568899999765443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=69.61 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=73.5
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHHHHcCCCCCCCCCh
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQWNSNKLPIYEPGL 83 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~~~~~~~~~e~~~ 83 (598)
||+|||+ |.||..+|..|+.+ .+.++. ..+++.++|+++.. .+... . ++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-------------------~~~~~~-~e~el~LiD~~~~~~~a~g~~---~-----Dl 52 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-------------------RMLGKD-QPIILHLLDIPPAMKVLEGVV---M-----EL 52 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-------------------cccCCC-CccEEEEEecCCcccccceeE---e-----eh
Confidence 6999999 99999999999871 000000 12379999996542 22110 0 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+...... .....+++..+++++||+||++...|..+..++.+ ...+.+.+++....|.++.+++.+++.- |-|...
T Consensus 53 ~d~~~~~~-~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 53 MDCAFPLL-DGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred hcccchhc-CceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 00000000 12334445446899999999998877654321111 1234456677777777776455555443 356655
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
.-.++.
T Consensus 131 ~t~v~~ 136 (324)
T TIGR01758 131 NALVLS 136 (324)
T ss_pred HHHHHH
Confidence 544443
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0028 Score=68.94 Aligned_cols=90 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|+|+|.+|..+|..+.. .|.+|+++|+++.+.......
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~---------------------------~Ga~ViV~d~dp~r~~~A~~~---------- 237 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG---------------------------MGARVIVTEVDPIRALEAAMD---------- 237 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh---------------------------CcCEEEEEeCChhhHHHHHhc----------
Confidence 4689999999999999999888 788999999999875443321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+... .+.+++++.+|++|.+++++. .+. ......++++.++++.+-.
T Consensus 238 ---------G~~v-~~leeal~~aDVVItaTG~~~--------------vI~---~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 238 ---------GFRV-MTMEEAAKIGDIFITATGNKD--------------VIR---GEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ---------CCEe-CCHHHHHhcCCEEEECCCCHH--------------HHH---HHHHhcCCCCcEEEEECCC
Confidence 1122 234667899999998865431 111 2355678899998875443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0019 Score=59.52 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=55.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||+|-+|..++..|+. .|. +|++++|+.++.+.+.+..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~---------------------------~g~~~i~i~nRt~~ra~~l~~~~-------- 56 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAA---------------------------LGAKEITIVNRTPERAEALAEEF-------- 56 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHH---------------------------TTSSEEEEEESSHHHHHHHHHHH--------
T ss_pred CCEEEEECCHHHHHHHHHHHHH---------------------------cCCCEEEEEECCHHHHHHHHHHc--------
Confidence 4689999999999999999999 675 4999999999999876421
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.. ..-......+..+.+.++|+||.|+|.+.
T Consensus 57 ----~~-~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 57 ----GG-VNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp ----TG-CSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred ----Cc-cccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 00 00112334556667899999999987664
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=67.99 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=69.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++.|+|+|-+|.+++..|++ .|++|+++++++++.+.+.+.....
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~---------------------------~g~~v~v~~R~~~~~~~la~~~~~~------ 163 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLK---------------------------ADCNVIIANRTVSKAEELAERFQRY------ 163 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHHHhhc------
Confidence 4679999999999999999999 7899999999999888766421000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
......+.......++|+||.|+|....... .... + -...++++.+|++.++.|+.|.
T Consensus 164 --------~~~~~~~~~~~~~~~~DivInatp~gm~~~~----~~~~---~------~~~~l~~~~~v~D~~y~p~~T~ 221 (270)
T TIGR00507 164 --------GEIQAFSMDELPLHRVDLIINATSAGMSGNI----DEPP---V------PAEKLKEGMVVYDMVYNPGETP 221 (270)
T ss_pred --------CceEEechhhhcccCccEEEECCCCCCCCCC----CCCC---C------CHHHcCCCCEEEEeccCCCCCH
Confidence 0111111111234579999999876432110 0000 1 0234678899999999999773
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0021 Score=70.86 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=65.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH-cCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN-SNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-~~~~~~~e~~~ 83 (598)
.++|+|||+|.+|..+|..+.. .|.+|+++|+++.+..... .|
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a---------------------------~Ga~ViV~e~dp~~a~~A~~~G--------- 297 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRG---------------------------FGARVVVTEIDPICALQAAMEG--------- 297 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCchhHHHHHhcC---------
Confidence 3689999999999999999988 7889999999987764322 11
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.. ..+++++++.+|+|+++++++. .+ -....+.++++.++++.+-.
T Consensus 298 -----------~~-~~~leell~~ADIVI~atGt~~--------------iI---~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 298 -----------YQ-VVTLEDVVETADIFVTATGNKD--------------II---TLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred -----------ce-eccHHHHHhcCCEEEECCCccc--------------cc---CHHHHhccCCCcEEEEcCCC
Confidence 11 2356778999999999965431 01 12455678999999986554
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=58.61 Aligned_cols=99 Identities=18% Similarity=0.308 Sum_probs=58.3
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEE-eCCHHHHHHHHcCCCCCCCCChH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV-DKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
||+|+|+ |++|..++..|... +++++..+ +++.++-+.+......+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--------------------------~~~~l~av~~~~~~~~~~~~~~~~~~~----- 49 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--------------------------PDFEVVALAASARSAGKRVSEAGPHLK----- 49 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--------------------------CCceEEEEEechhhcCcCHHHHCcccc-----
Confidence 6899995 99999999888871 46677766 554333222221100000
Q ss_pred HHHhhhcCCceEEe-cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 85 EVVKKTRDVNLFFS-TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
..+ . ..++ .+.+ ..++|+||+|+|... ..+.+..+.+.+.++++|++.|+.-
T Consensus 50 ~~~-----~-~~~~~~~~~--~~~~DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 50 GEV-----V-LELEPEDFE--ELAVDIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred ccc-----c-cccccCChh--hcCCCEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCccc
Confidence 000 0 0111 2222 258999999986542 3444445556678999999998763
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.001 Score=63.61 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=66.1
Q ss_pred EEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 8 ICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 8 I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
|+|+|+ |++|..++..|.+ .|++|+++-|++++.+. ..+...+ .
T Consensus 1 I~V~GatG~vG~~l~~~L~~---------------------------~~~~V~~~~R~~~~~~~-~~~~~~~-~------ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLR---------------------------RGHEVTALVRSPSKAED-SPGVEII-Q------ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHH---------------------------TTSEEEEEESSGGGHHH-CTTEEEE-E------
T ss_pred eEEECCCChHHHHHHHHHHH---------------------------CCCEEEEEecCchhccc-ccccccc-e------
Confidence 789997 9999999999999 78999999999998887 2221111 0
Q ss_pred HhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 87 VKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
..+.-..+..++++++|+||.+++.+.. |...++.+++.+.+. ....+|+.+|+-.
T Consensus 46 ------~d~~d~~~~~~al~~~d~vi~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~~~ 101 (183)
T PF13460_consen 46 ------GDLFDPDSVKAALKGADAVIHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSAGV 101 (183)
T ss_dssp ------SCTTCHHHHHHHHTTSSEEEECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEETTG
T ss_pred ------eeehhhhhhhhhhhhcchhhhhhhhhcc----------ccccccccccccccc-ccccceeeecccc
Confidence 0010012346678899999999976532 344555555555443 3445666555543
|
... |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0039 Score=65.74 Aligned_cols=87 Identities=11% Similarity=0.215 Sum_probs=58.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCH-HHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSE-ERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~-~~~~~~~~~~~~~~e~~ 82 (598)
..||+|||+|.||...+..+... ++.++++ +|+++ +++. .+ .
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--------------------------pd~ELVgV~dr~~~~~~~---~~-~------ 46 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--------------------------PDMELVGVFSRRGAETLD---TE-T------ 46 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--------------------------CCcEEEEEEcCCcHHHHh---hc-C------
Confidence 47999999999999999888761 5778776 69985 4332 11 1
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
....+.+..+.+.++|++++|+|+..+ ...+.+.+..+.-||.+.
T Consensus 47 -----------~v~~~~d~~e~l~~iDVViIctPs~th------------------~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 47 -----------PVYAVADDEKHLDDVDVLILCMGSATD------------------IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred -----------CccccCCHHHhccCCCEEEEcCCCccC------------------HHHHHHHHHcCCCEEECC
Confidence 122345666677889999999766432 233444556676677654
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=63.83 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=38.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
++|+|+|+|.||..+|..|.+ .|++|+++|+++++++.+..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~---------------------------~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLE---------------------------EGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHH
Confidence 689999999999999999999 89999999999998887764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0038 Score=68.38 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=65.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|+|+|.+|..+|..+.. .|.+|+++|+++.+.......
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~---------------------------~Ga~ViV~d~dp~ra~~A~~~---------- 254 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRG---------------------------LGARVIVTEVDPICALQAAMD---------- 254 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEcCCchhhHHHHhc----------
Confidence 4689999999999999999998 788999999999886543321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv 158 (598)
+.. ..+.+++++.+|+||.+++++ .++ ......++++.++++-+..
T Consensus 255 ---------G~~-v~~l~eal~~aDVVI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 255 ---------GFR-VMTMEEAAELGDIFVTATGNK------------------DVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred ---------CCE-ecCHHHHHhCCCEEEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 112 224567888999999886543 122 2456678899998875443
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0044 Score=67.63 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=64.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|+|+|.+|..+|..+.. .|.+|+++|+++.+.+....-
T Consensus 202 GktVvViG~G~IG~~va~~ak~---------------------------~Ga~ViV~d~d~~R~~~A~~~---------- 244 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG---------------------------QGARVIVTEVDPICALQAAME---------- 244 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEECChhhHHHHHhc----------
Confidence 3689999999999999999888 788999999999987765531
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+... .+.++++..+|+||.|++++. .+. ....+.++++.++++-+
T Consensus 245 ---------G~~~-~~~~e~v~~aDVVI~atG~~~--------------~i~---~~~l~~mk~GgilvnvG 289 (413)
T cd00401 245 ---------GYEV-MTMEEAVKEGDIFVTTTGNKD--------------IIT---GEHFEQMKDGAIVCNIG 289 (413)
T ss_pred ---------CCEE-ccHHHHHcCCCEEEECCCCHH--------------HHH---HHHHhcCCCCcEEEEeC
Confidence 1111 234567889999999865431 111 23456788999888766
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=64.43 Aligned_cols=112 Identities=22% Similarity=0.232 Sum_probs=74.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC----CCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK----LPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~~~~e 80 (598)
.-||+|+|.|.+|.+.|..||. .||+|..||+.++.+....+.. ..+.+
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs---------------------------~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee 55 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFAS---------------------------SGYQVQLYDILEKQLQTALENVEKELRKLEE 55 (313)
T ss_pred ccceeEeecccccchHHHHHhc---------------------------cCceEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999 8999999999988776432210 00111
Q ss_pred CC-------hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 81 PG-------LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.| .++.+ ..+..|+++.+++++|=.|=-|||... ..-+...+++-+.+.+.+|+-
T Consensus 56 ~g~lrGnlsa~eql-----a~is~t~~l~E~vk~Ai~iQEcvpE~L-------------~lkk~ly~qlD~i~d~~tIla 117 (313)
T KOG2305|consen 56 HGLLRGNLSADEQL-----ALISGTTSLNELVKGAIHIQECVPEDL-------------NLKKQLYKQLDEIADPTTILA 117 (313)
T ss_pred hhhhccCccHHHHH-----HHHhCCccHHHHHhhhhhHHhhchHhh-------------HHHHHHHHHHHHhcCCceEEe
Confidence 11 11111 124457889999999988888987643 233556677777776666653
Q ss_pred E-ecCCchH
Q psy11160 154 E-KSTVPVR 161 (598)
Q Consensus 154 ~-~STv~~~ 161 (598)
. .||..|.
T Consensus 118 SSTSt~mpS 126 (313)
T KOG2305|consen 118 SSTSTFMPS 126 (313)
T ss_pred ccccccChH
Confidence 3 2445553
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.003 Score=66.96 Aligned_cols=92 Identities=11% Similarity=0.133 Sum_probs=63.0
Q ss_pred ceEEEECCChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++++|||+|.+|..+|..+. . -|.+|.+||+.........
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~---------------------------fgm~V~~~~~~~~~~~~~~------------ 186 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFG---------------------------FNMPILYNARRHHKEAEER------------ 186 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhc---------------------------CCCEEEEECCCCchhhHHh------------
Confidence 68999999999999999887 5 5789999997532111000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.+.+. .++++.+++||+|++++|-...+ ..+. -+.....++++.++|+.+--
T Consensus 187 --------~~~~~-~~l~ell~~sDvv~lh~plt~~T-----------~~li--~~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 187 --------FNARY-CDLDTLLQESDFVCIILPLTDET-----------HHLF--GAEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred --------cCcEe-cCHHHHHHhCCEEEEeCCCChHH-----------hhcc--CHHHHhcCCCCeEEEECCCc
Confidence 01222 37888999999999998743221 1121 13456778999999986543
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.014 Score=59.96 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=90.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|+|+ |.||..++..+... +++++++ +|+++++.... . +
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~--------------------------~~~elvav~d~~~~~~~~~--~-----~--- 45 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA--------------------------EDLELVAAVDRPGSPLVGQ--G-----A--- 45 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--------------------------CCCEEEEEEecCCcccccc--C-----C---
Confidence 69999999 99999999888761 4567655 88887655432 0 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC-chHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV-PVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv-~~~~ 162 (598)
.++..++|+++.++++|+|+.+++ |. ...+ .+...+..++-||..+|- .+..
T Consensus 46 ---------~~i~~~~dl~~ll~~~DvVid~t~-p~--------------~~~~---~~~~al~~G~~vvigttG~s~~~ 98 (257)
T PRK00048 46 ---------LGVAITDDLEAVLADADVLIDFTT-PE--------------ATLE---NLEFALEHGKPLVIGTTGFTEEQ 98 (257)
T ss_pred ---------CCccccCCHHHhccCCCEEEECCC-HH--------------HHHH---HHHHHHHcCCCEEEECCCCCHHH
Confidence 123456788887888999998853 21 1222 233334456655555543 4555
Q ss_pred HHHHHHHHhhccCCccc--ccCCCCCchHHHHHHHHHHHHhcCCceEEEec------cccchhhhhHHHHHhh
Q psy11160 163 AESIMNVLKANHKTNVQ--FQGRAADLKYVEAAARMIAEIATDNKIVVEKS------TVPVRAAESIMNVLKA 227 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~--~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eS------TvP~gtt~~~~~~L~~ 227 (598)
.+++.. .++.-+. ..+...-...+....+..++.+.+=++-|+|+ -.|-||...+.+.+..
T Consensus 99 ~~~l~~----aa~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~HH~~K~DaPSGTA~~l~~~i~~ 167 (257)
T PRK00048 99 LAELEE----AAKKIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAHHRHKVDAPSGTALKLAEAIAE 167 (257)
T ss_pred HHHHHH----HhcCCCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEccCCCCCCCCCHHHHHHHHHHHH
Confidence 555544 1122221 12222233344555555555553336667665 4688998877666654
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.003 Score=66.61 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=64.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. -|.+|++||+..... +
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~---------------------------fgm~V~~~d~~~~~~-----------~---- 182 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQA---------------------------FGAKVVYYSTSGKNK-----------N---- 182 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhh---------------------------cCCEEEEECCCcccc-----------c----
Confidence 3689999999999999988877 588999999853110 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.... ..++++.+++||+|++++|-...+.+ ..+ +.....++++.++|+.|--+.
T Consensus 183 --------~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~-----li~--------~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 183 --------EEYE-RVSLEELLKTSDIISIHAPLNEKTKN-----LIA--------YKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred --------cCce-eecHHHHhhcCCEEEEeCCCCchhhc-----ccC--------HHHHHhCCCCeEEEECCCccc
Confidence 0112 23678899999999999874322111 111 345567899999998664433
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.022 Score=62.89 Aligned_cols=169 Identities=13% Similarity=0.163 Sum_probs=94.6
Q ss_pred ceEEEECCChhHHH--HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGP--TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~--~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.. .+ +...|...-+. + ++-+|+++|+|+++.+.+.+- .
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~--------------------l--~~~ei~L~DId~~rl~~v~~l--------~ 49 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKED--------------------F--PLRELVLYDIDAERQEKVAEA--------V 49 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCccc--------------------C--CCCEEEEECCCHHHHHHHHHH--------H
Confidence 69999999986 33 23333330000 1 567999999999998874420 1
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
..++++. .+-++..|+|.++|+++||+||.++.-... ..+..-+.|... .-++-.++|-+.|.
T Consensus 50 ~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~~irvGg~-------------~~r~~De~Ip~k---yGi~gqET~G~GG~ 113 (437)
T cd05298 50 KILFKENYPEIKFVYTTDPEEAFTDADFVFAQIRVGGY-------------AMREQDEKIPLK---HGVVGQETCGPGGF 113 (437)
T ss_pred HHHHHhhCCCeEEEEECCHHHHhCCCCEEEEEeeeCCc-------------hHHHHHHhHHHH---cCcceecCccHHHH
Confidence 1112211 123688999999999999999999743211 112222334322 22455577788887
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
...+-. ..-+.+-++.|.+.+ |+.++ +--|-|.+-.. ..+........-++++++|.
T Consensus 114 ~~alRt------------------ip~~~~i~~~i~~~~-pda~l-in~tNP~~~vt---~~~~~~~~~~kviGlC~~~~ 170 (437)
T cd05298 114 AYGLRS------------------IGPMIELIDDIEKYS-PDAWI-LNYSNPAAIVA---EALRRLFPNARILNICDMPI 170 (437)
T ss_pred HHHHhh------------------HHHHHHHHHHHHHHC-CCeEE-EEecCcHHHHH---HHHHHHCCCCCEEEECCcHH
Confidence 765543 345566677777766 33333 33455554321 12221111123466777775
Q ss_pred cc
Q psy11160 243 FL 244 (598)
Q Consensus 243 ~~ 244 (598)
..
T Consensus 171 ~~ 172 (437)
T cd05298 171 AI 172 (437)
T ss_pred HH
Confidence 53
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0024 Score=70.34 Aligned_cols=73 Identities=26% Similarity=0.306 Sum_probs=52.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
|||.|+|+|.+|..+|..|.+ .|++|+++|+++++++.+.+ ...++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~---------------------------~g~~v~vid~~~~~~~~~~~~~~~~~~~---- 49 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSG---------------------------ENNDVTVIDTDEERLRRLQDRLDVRTVV---- 49 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEECCHHHHHHHHhhcCEEEEE----
Confidence 589999999999999999999 79999999999999998764 2111110
Q ss_pred HHHhhhcCCceEEecCHHHH-hccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSA-IQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~~~adviii~v~t 117 (598)
+..+-...+.++ +.++|.+|++++.
T Consensus 50 --------gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 50 --------GNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred --------eCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 001111123334 6789999999754
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=61.63 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=100.8
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
+++++|+| .|.|+ +.+++.|.+.|++|.++.- ++++. . ..+..+..+..++++++|
T Consensus 2 ~~~~~v~g-------gd~r~---~~~~~~l~~~G~~v~~~g~--~~~~~-----------~-~~g~~~~~~~~~~~~~ad 57 (296)
T PRK08306 2 GKHIAVIG-------GDARQ---LELIRKLVELGAKVSLVGF--DQLDH-----------G-FTGATKSSSLEEALSDVD 57 (296)
T ss_pred CcEEEEEc-------CcHHH---HHHHHHHHHCCCEEEEEec--ccccc-----------c-cCCceeeccHHHHhccCC
Confidence 57899999 67765 7899999999999998531 11110 0 114466677888999999
Q ss_pred EEEEEeec--------cchhh--ccH-HHHHhccCCCcEEEecCCC-CChhhhhhccceeeecc-c-----hhh-hHHHH
Q psy11160 474 AIVVCTEW--------DEFVT--LDY-KRIYEGMMKPAYIFDGRKI-LNHDALLDIGFNVHTVI-D-----LNE-YQKTR 534 (598)
Q Consensus 474 alii~t~~--------~~f~~--ld~-~~l~~~m~~~~iI~D~r~i-~d~~~~~~~G~~y~~v~-~-----iN~-~~~~~ 534 (598)
+++.+..- .-|.. +.+ ....+.|++..++|=+.-- .-.+...+.|+.+.... + .|. ..-+.
T Consensus 58 ~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~~G~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ns~~~aeg 137 (296)
T PRK08306 58 VIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIFSGIANPYLKELAKETNRKLVELFERDDVAILNSIPTAEG 137 (296)
T ss_pred EEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEeccchhhhhccHhHHHH
Confidence 99988442 11211 111 2345556666545532211 12245556777553222 1 121 11122
Q ss_pred HHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCC
Q psy11160 535 FSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKL 592 (598)
Q Consensus 535 ~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~ 592 (598)
.+....+.++.++.+++|+|+|..- -...++..|...|++|.+||...
T Consensus 138 av~~a~~~~~~~l~g~kvlViG~G~----------iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 138 AIMMAIEHTPITIHGSNVLVLGFGR----------TGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred HHHHHHHhCCCCCCCCEEEEECCcH----------HHHHHHHHHHHCCCEEEEEECCH
Confidence 2222233344567899999999864 23889999999999999998763
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.004 Score=61.65 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=52.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|++||||.+|..+...+.+ +|- .---|.+||++.+++..+.+..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~----------------~~~--------~~e~v~v~D~~~ek~~~~~~~~---------- 46 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRD----------------GRV--------DFELVAVYDRDEEKAKELEASV---------- 46 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhc----------------CCc--------ceeEEEEecCCHHHHHHHHhhc----------
Confidence 589999999999999988876 111 1136889999999999877542
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEec
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISV 115 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v 115 (598)
.-+.++++++.+.+.|+++-|.
T Consensus 47 --------~~~~~s~ide~~~~~DlvVEaA 68 (255)
T COG1712 47 --------GRRCVSDIDELIAEVDLVVEAA 68 (255)
T ss_pred --------CCCccccHHHHhhccceeeeeC
Confidence 1233478888889999999994
|
|
| >KOG1495|consensus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0031 Score=63.86 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=57.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH----HHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ----WNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~----~~~~~~~~~e 80 (598)
..||.|+|.|.||.+.|..+.. ++-.-++..+|.++++.+- ++.| .++.
T Consensus 20 ~~KItVVG~G~VGmAca~siL~-------------------------k~Ladel~lvDv~~dklkGE~MDLqH~-s~f~- 72 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILL-------------------------KGLADELVLVDVNEDKLKGEMMDLQHG-SAFL- 72 (332)
T ss_pred CceEEEEccchHHHHHHHHHHH-------------------------hhhhhceEEEecCcchhhhhhhhhccc-cccc-
Confidence 4699999999999999998877 1123599999999998763 2222 2221
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKT 121 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~ 121 (598)
...++.++.|+. +-++++++|++.+.-..+
T Consensus 73 ----------~~~~V~~~~Dy~-~sa~S~lvIiTAGarq~~ 102 (332)
T KOG1495|consen 73 ----------STPNVVASKDYS-VSANSKLVIITAGARQSE 102 (332)
T ss_pred ----------cCCceEecCccc-ccCCCcEEEEecCCCCCC
Confidence 124677888886 788999999998765443
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0053 Score=64.53 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=76.8
Q ss_pred CCC-CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH------HHHHH
Q psy11160 1 MVQ-TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER------IRQWN 72 (598)
Q Consensus 1 m~~-~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~------~~~~~ 72 (598)
|++ ..++|||-|+ ||+|+.+...|.. +||.|.+.=|+++. +..+.
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~---------------------------rGY~V~gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLS---------------------------RGYTVRGTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHh---------------------------CCCEEEEEEcCcchhhhHHHHHhcc
Confidence 555 4689999987 9999999999999 89999999999886 33332
Q ss_pred cCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCC---CCCCcchHHHHHHHHHHHHHcCCC
Q psy11160 73 SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNG---KGRAADLKYVEAAARMIAEIATDN 149 (598)
Q Consensus 73 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~ 149 (598)
....... .....+.-..+..++++.||.||-+. +|...+..+ .--.++++...++++.+.+.-+=.
T Consensus 54 ~a~~~l~----------l~~aDL~d~~sf~~ai~gcdgVfH~A-sp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVk 122 (327)
T KOG1502|consen 54 GAKERLK----------LFKADLLDEGSFDKAIDGCDGVFHTA-SPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVK 122 (327)
T ss_pred cCcccce----------EEeccccccchHHHHHhCCCEEEEeC-ccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcc
Confidence 1111010 01123445567888999999987654 454322211 112345555666666665554445
Q ss_pred cEEEEecCCch
Q psy11160 150 KIVVEKSTVPV 160 (598)
Q Consensus 150 ~ivv~~STv~~ 160 (598)
.+|+.+|+...
T Consensus 123 rvV~TSS~aAv 133 (327)
T KOG1502|consen 123 RVVYTSSTAAV 133 (327)
T ss_pred eEEEeccHHHh
Confidence 67776666544
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0079 Score=72.36 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=56.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++++|+|||+|+||.+.|..|++ .|+++.-.++.+ ..++..|++.|++.++.+.+.++.. +.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~-~~~~~~~~~~~~------------~~~~~lV~VaD~~~~~a~~la~~~~-----~~ 629 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLAS-VKTISYYGDDSE------------EPTDVHVIVASLYLKDAKETVEGIE-----NA 629 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHh-CcCccccccccc------------cccccEEEEECCCHHHHHHHHHhcC-----CC
Confidence 45799999999999999999998 233221001111 0023469999999999988775421 10
Q ss_pred HHHHhhhcCCceEE-ecCHHH---HhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFF-STDIKS---AIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~---~~~~adviii~v~tp~ 119 (598)
..... .+|.++ .++++|+|++|+|+..
T Consensus 630 ---------~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 630 ---------EAVQLDVSDSESLLKYVSQVDVVISLLPASC 660 (1042)
T ss_pred ---------ceEEeecCCHHHHHHhhcCCCEEEECCCchh
Confidence 01122 344443 3467999999988764
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0051 Score=65.16 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=66.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++++|||+|.+|..+|..++- -|.+|..||+++. -+.-..
T Consensus 146 gktvGIiG~GrIG~avA~r~~~---------------------------Fgm~v~y~~~~~~-~~~~~~----------- 186 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKG---------------------------FGMKVLYYDRSPN-PEAEKE----------- 186 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhc---------------------------CCCEEEEECCCCC-hHHHhh-----------
Confidence 3789999999999999999887 6899999999864 111111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.+.++.. +++.+++||+|++.+|--.+ ...+. -+...+.++++.++|+.+--..
T Consensus 187 --------~~~~y~~-l~ell~~sDii~l~~Plt~~-----------T~hLi--n~~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 187 --------LGARYVD-LDELLAESDIISLHCPLTPE-----------TRHLI--NAEELAKMKPGAILVNTARGGL 240 (324)
T ss_pred --------cCceecc-HHHHHHhCCEEEEeCCCChH-----------Hhhhc--CHHHHHhCCCCeEEEECCCccc
Confidence 1133444 78899999999999764321 22222 2456678999999998655443
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.004 Score=67.27 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=70.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~~e~~~~ 84 (598)
.+|.|||+|.+|...+..+.. .|.+|+++|+++++.+.+.+.. ..+..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~---------------------------lGa~V~v~d~~~~~~~~l~~~~g~~v~~---- 216 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANG---------------------------LGATVTILDINIDRLRQLDAEFGGRIHT---- 216 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHH---------------------------CCCeEEEEECCHHHHHHHHHhcCceeEe----
Confidence 579999999999999999998 7889999999999988775321 11100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
...-..++.+.++++|+||.|++.|..+ .+.+ +.+...+.++++.+|++-+.-+-|..
T Consensus 217 ---------~~~~~~~l~~~l~~aDvVI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~~ 274 (370)
T TIGR00518 217 ---------RYSNAYEIEDAVKRADLLIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370)
T ss_pred ---------ccCCHHHHHHHHccCCEEEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCCc
Confidence 0000123456788999999997554321 1110 11333455788999998886666554
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0076 Score=63.96 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=67.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|.+|...+..++.. ..-.+|.+|++++++.+.+.+..
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~-------------------------~~~~~v~v~~r~~~~a~~~~~~~--------- 172 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAV-------------------------RDIERVRVYSRTFEKAYAFAQEI--------- 172 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-------------------------CCccEEEEECCCHHHHHHHHHHH---------
Confidence 35799999999999888777650 02258999999999998776421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
............++++++.++|+|+.|+|.+. + + +. ..+++|+.|.--.+-.|+.
T Consensus 173 ---~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~----------p----~---i~---~~l~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 173 ---QSKFNTEIYVVNSADEAIEEADIIVTVTNAKT----------P----V---FS---EKLKKGVHINAVGSFMPDM 227 (325)
T ss_pred ---HHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC----------c----c---hH---HhcCCCcEEEecCCCCccc
Confidence 00001124556788889999999999976542 1 1 11 3457888876554444433
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0053 Score=67.68 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=63.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH-HHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ-WNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-~~~~~~~~~e~~~ 83 (598)
..+|+|+|+|.+|..+|..+.. .|.+|+++|+++.+... ...|
T Consensus 254 GKtVvViGyG~IGr~vA~~aka---------------------------~Ga~VIV~e~dp~r~~eA~~~G--------- 297 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA---------------------------AGARVIVTEIDPICALQALMEG--------- 297 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCchhhHHHHhcC---------
Confidence 3689999999999999999988 68899999999876443 3332
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
... .+.+++++.+|++|.+.++.. + +.......++++.++++.+-
T Consensus 298 -----------~~v-v~leEal~~ADVVI~tTGt~~---------------v--I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 298 -----------YQV-LTLEDVVSEADIFVTTTGNKD---------------I--IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred -----------Cee-ccHHHHHhhCCEEEECCCCcc---------------c--hHHHHHhcCCCCCEEEEcCC
Confidence 111 245678899999998755431 0 12445567899999987554
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0026 Score=69.44 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=64.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE------EEeCCHHHHHHHHcCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT------VVDKSEERIRQWNSNKLPI 78 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~------~~d~~~~~~~~~~~~~~~~ 78 (598)
.++|+|||+|..|...|..|.. .|++|+ ++|.+...-+.+.+.
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrd---------------------------SGvnVvvglr~~~id~~~~s~~kA~~d---- 84 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRD---------------------------SGLDISYALRKEAIAEKRASWRKATEN---- 84 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCcc---------------------------ccceeEEeccccccccccchHHHHHhc----
Confidence 3689999999999999988888 788888 555444443333221
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
++.. .++.++++.||+|++.+|... -..+.+.|.+.++++.++..+--
T Consensus 85 ---------------GF~v-~~~~Ea~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 85 ---------------GFKV-GTYEELIPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred ---------------CCcc-CCHHHHHHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecCC
Confidence 1222 457889999999999976431 23344889999999998876433
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0032 Score=69.15 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=54.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.||..++..|+. .| .+|++++++.++.+.+.+...
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~---------------------------~G~~~V~v~~rs~~ra~~la~~~g------- 225 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLR---------------------------KGVGKILIANRTYERAEDLAKELG------- 225 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHH---------------------------CCCCEEEEEeCCHHHHHHHHHHcC-------
Confidence 3689999999999999999998 67 799999999998876653210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.......+..+++.++|+||.|++.|.
T Consensus 226 ---------~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 226 ---------GEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred ---------CeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 001112355667889999999986653
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0027 Score=57.36 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=19.1
Q ss_pred eEEEEC-CChhHHHHHHHHHH
Q psy11160 7 HICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 7 ~I~viG-~G~vG~~~a~~la~ 26 (598)
||+||| .||+|..+...|++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~ 21 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAE 21 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhc
Confidence 799999 99999999999998
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.008 Score=57.93 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=53.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+ |.+|..++.-..+ .||+|+.+-||++++...+ +.. +.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~---------------------------RGHeVTAivRn~~K~~~~~-~~~-i~q---- 47 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALK---------------------------RGHEVTAIVRNASKLAARQ-GVT-ILQ---- 47 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHh---------------------------CCCeeEEEEeChHhccccc-cce-eec----
Confidence 69999998 9999999998888 8999999999999997652 321 111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
..++--+...+++..-|+||.+....
T Consensus 48 --------~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 48 --------KDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred --------ccccChhhhHhhhcCCceEEEeccCC
Confidence 11221233456789999999998655
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0077 Score=64.30 Aligned_cols=71 Identities=17% Similarity=0.313 Sum_probs=48.5
Q ss_pred CCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e 80 (598)
....||+|||+|.+|.. .+..+.. + .+.+++ ++|+++++... . .
T Consensus 2 ~~~irvgiiG~G~i~~~~~~~~~~~-~-------------------------~~~~l~av~d~~~~~~~~---~-~---- 47 (346)
T PRK11579 2 SDKIRVGLIGYGYASKTFHAPLIAG-T-------------------------PGLELAAVSSSDATKVKA---D-W---- 47 (346)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhh-C-------------------------CCCEEEEEECCCHHHHHh---h-C----
Confidence 34579999999999974 4555555 1 456665 58999877542 1 0
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
....+.+|+++.++ +.|+|+||+|+..
T Consensus 48 ------------~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 48 ------------PTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ------------CCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 11345678888885 5799999987654
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.009 Score=63.53 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=56.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|...+..++. .....+|.+|++++++.+.+.+...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~-------------------------~~~~~~V~v~~R~~~~a~~l~~~~~-------- 178 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTL-------------------------VRPIREVRVWARDAAKAEAYAADLR-------- 178 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEcCCHHHHHHHHHHHh--------
Confidence 3689999999999998888875 1123689999999999998864210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+.....+....|+++++.+||+|+.|+|..
T Consensus 179 ----~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 179 ----AELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred ----hccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 000112455688888999999999997653
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=63.98 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=54.9
Q ss_pred ceEEEECCChhHHHH-HHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC-HHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPT-CSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS-EERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~-~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|..-.+- ...|+...+.. .+-+|+++|+| +++++....- .
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l----------------------~~~ei~L~Did~~~rl~~v~~~--------~ 50 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEEL----------------------PVTELVLVDIDEEEKLEIVGAL--------A 50 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccC----------------------CCCEEEEecCChHHHHHHHHHH--------H
Confidence 699999999975532 23344311111 45799999999 8887654320 1
Q ss_pred HHHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
..++++.- +-.+..|+|.++|+.+||+||++...+.
T Consensus 51 ~~~~~~~~~~~~v~~t~d~~~al~gadfVi~~~~vg~ 87 (419)
T cd05296 51 KRMVKKAGLPIKVHLTTDRREALEGADFVFTQIRVGG 87 (419)
T ss_pred HHHHHhhCCCeEEEEeCCHHHHhCCCCEEEEEEeeCC
Confidence 11222211 2368899999999999999999986543
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0036 Score=59.48 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=67.8
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
++|+++|+ ......+++.|.+.|++|.+||+.... .. .+. ..+...++++.++++++|+
T Consensus 2 ~~Ig~IGl----------G~mG~~~a~~L~~~g~~v~~~d~~~~~--~~-~~~--------~~g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 2 MKIGFIGL----------GNMGSAMARNLAKAGYEVTVYDRSPEK--AE-ALA--------EAGAEVADSPAEAAEQADV 60 (163)
T ss_dssp BEEEEE------------SHHHHHHHHHHHHTTTEEEEEESSHHH--HH-HHH--------HTTEEEESSHHHHHHHBSE
T ss_pred CEEEEEch----------HHHHHHHHHHHHhcCCeEEeeccchhh--hh-hhH--------HhhhhhhhhhhhHhhcccc
Confidence 48999998 468899999999999999999965322 21 111 0145788999999999999
Q ss_pred EEEEeeccc-hhhccHHH--HHhccCCCcEEEecCCCCCh------hhhhhcccee
Q psy11160 475 IVVCTEWDE-FVTLDYKR--IYEGMMKPAYIFDGRKILNH------DALLDIGFNV 521 (598)
Q Consensus 475 lii~t~~~~-f~~ld~~~--l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y 521 (598)
++++..++. .++. +.. +...+.+..+|+|...+-.. +.+.+.|+.|
T Consensus 61 vi~~v~~~~~v~~v-~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~ 115 (163)
T PF03446_consen 61 VILCVPDDDAVEAV-LFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRY 115 (163)
T ss_dssp EEE-SSSHHHHHHH-HHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEE
T ss_pred eEeecccchhhhhh-hhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcccee
Confidence 999988854 2221 111 55566667799999887532 3333456555
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.039 Score=58.24 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=51.7
Q ss_pred CCceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---ceEEEEeCCHHHHHHHHcCCCCCC
Q psy11160 4 TISHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---IQVTVVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~v~~~d~~~~~~~~~~~~~~~~~ 79 (598)
+++||+|||+|.+ +...+..+.. .+ .-|.++|+++++.+.+.+...
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~---------------------------~~~~~~~vav~d~~~~~a~~~a~~~~--- 51 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAA---------------------------LGGGLELVAVVDRDPERAEAFAEEFG--- 51 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHh---------------------------CCCceEEEEEecCCHHHHHHHHHHcC---
Confidence 3579999999944 4567777777 22 346667999999887764210
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPTK 120 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~~ 120 (598)
.. ...+|+++.+++ .|+|+||+|+..+
T Consensus 52 -------------~~-~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 52 -------------IA-KAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred -------------CC-cccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 01 466788888875 5899999887653
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0062 Score=64.05 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=68.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|.+|...+..+..- +.-.+|.+|++++++.+.+.+...
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~-------------------------~~~~~v~v~~r~~~~a~~~a~~~~-------- 171 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAG-------------------------LPVRRVWVRGRTAASAAAFCAHAR-------- 171 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh-------------------------CCCCEEEEEcCCHHHHHHHHHHHH--------
Confidence 36899999999999999998751 022589999999999888764210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
. ...... ..+.++++.+||+|+.|+|.+. | +.. ..+++++.|..-++-.|+..
T Consensus 172 ----~-~~~~~~-~~~~~~av~~aDiVitaT~s~~----------P----l~~------~~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 172 ----A-LGPTAE-PLDGEAIPEAVDLVVTATTSRT----------P----VYP------EAARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred ----h-cCCeeE-ECCHHHHhhcCCEEEEccCCCC----------c----eeC------ccCCCCCEEEecCCCCCCcc
Confidence 0 001122 4678889999999999976542 1 111 12478888877666666543
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.039 Score=56.94 Aligned_cols=162 Identities=10% Similarity=0.076 Sum_probs=90.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCC-HHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKS-EERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~-~~~~~~~~~~~~~~~e~~ 82 (598)
+||+|+| +|.||..++..+... +++++++ +|++ +++..+ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--------------------------~~~elvav~d~~~~~~~~~-----------~ 44 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--------------------------EGLQLVAAFERHGSSLQGT-----------D 44 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--------------------------CCCEEEEEEecCCccccCC-----------C
Confidence 6999999 699999999999871 5666555 6743 322110 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC-CchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST-VPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST-v~~~ 161 (598)
..++... ...+...++|+++...++|++|.+++.. .. .+.+...+..++-||..+| ..+.
T Consensus 45 ~~~~~~~-~~~gv~~~~d~~~l~~~~DvVIdfT~p~---------------~~---~~~~~~al~~g~~vVigttg~~~e 105 (266)
T TIGR00036 45 AGELAGI-GKVGVPVTDDLEAVETDPDVLIDFTTPE---------------GV---LNHLKFALEHGVRLVVGTTGFSEE 105 (266)
T ss_pred HHHhcCc-CcCCceeeCCHHHhcCCCCEEEECCChH---------------HH---HHHHHHHHHCCCCEEEECCCCCHH
Confidence 0000000 0013556788876645689999996432 12 2333444556665665555 3333
Q ss_pred HHHHHHHHHhhccCCccc----ccCCCCCchHHHHHHHHHHHHhcCCceEEEec------cccchhhhhHHHHHhh
Q psy11160 162 AAESIMNVLKANHKTNVQ----FQGRAADLKYVEAAARMIAEIATDNKIVVEKS------TVPVRAAESIMNVLKA 227 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~----~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eS------TvP~gtt~~~~~~L~~ 227 (598)
..+++.. .++.++. +.+...=...|....+..++.+..=++-|+|. -.|-||...+.+.+..
T Consensus 106 ~~~~l~~----aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~E~HH~~K~DaPSGTA~~l~~~i~~ 177 (266)
T TIGR00036 106 DKQELAD----LAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEIIELHHRHKKDAPSGTALKTAEMIAE 177 (266)
T ss_pred HHHHHHH----HHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEeeeeccCCCCCCCCHHHHHHHHHHHH
Confidence 4444433 3233211 12223334456677777777775445566665 5688998777666554
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0067 Score=65.84 Aligned_cols=105 Identities=12% Similarity=0.180 Sum_probs=64.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCC-CCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLP-IYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~-~~e~~~ 83 (598)
++|+|||+|.+|..+|..++. + -|.+|++||+.... .+........ ..+.+.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~-----------------------~---fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~ 219 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVE-----------------------G---FKMNLIYYDLYQSTRLEKFVTAYGQFLKANGE 219 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----------------------c---CCCEEEEECCCCchhhhhhhhhhccccccccc
Confidence 689999999999999999864 1 47899999987532 1111000000 000000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
. ....+...++++.+++||+|++++|-...+ ..+. -+.....++++.++|+.+
T Consensus 220 ~-------~~~~~~~~~L~ell~~sDiV~lh~Plt~~T-----------~~li--n~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 220 Q-------PVTWKRASSMEEVLREADVISLHPVLDKTT-----------YHLI--NKERLALMKKEAVLVNAS 272 (386)
T ss_pred c-------cccccccCCHHHHHhhCCEEEEeCCCChhh-----------hhhc--CHHHHHhCCCCeEEEECC
Confidence 0 011223457899999999999997642211 1121 135567789999999865
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.014 Score=61.86 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=68.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|.+|...+..++. .+ .-.+|.+||+++++.+.+.+...
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~-~~------------------------~i~~v~v~~r~~~~~~~~~~~~~-------- 175 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSE-VF------------------------DLEEVRVYDRTKSSAEKFVERMS-------- 175 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHh-hC------------------------CceEEEEECCCHHHHHHHHHHHH--------
Confidence 3589999999999999998886 11 22589999999999888764210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+..+.......+++++++ +|+|++|+|+.. |- +. .+.+++++.|..-++-.|+.
T Consensus 176 ----~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~----------P~---~~------~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 176 ----SVVGCDVTVAEDIEEACD-CDILVTTTPSRK----------PV---VK------AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred ----hhcCceEEEeCCHHHHhh-CCEEEEecCCCC----------cE---ec------HHHcCCCCEEEecCCCCCcc
Confidence 000123456778888886 999999976532 11 11 23567888876555555543
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.005 Score=67.75 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=54.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.||..++..|.. .|. +|+++++++++.+.+.+...
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~---------------------------~G~~~V~v~~r~~~ra~~la~~~g------- 227 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAE---------------------------KGVRKITVANRTLERAEELAEEFG------- 227 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHH---------------------------CCCCeEEEEeCCHHHHHHHHHHcC-------
Confidence 3689999999999999999988 676 89999999999877654210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.......+..+++.++|+||.|++.|.
T Consensus 228 ---------~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 228 ---------GEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred ---------CcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 011112345567889999999987653
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.044 Score=60.35 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=53.8
Q ss_pred ceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||.|.. ...+...|.+ .|+ + + ++-+|+++|+|+++.+.+..- ..
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~-~~~--------~-----------l--~~~ei~L~Did~~Rl~~v~~l--------~~ 50 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLK-TPE--------E-----------L--PISEVTLYDIDEERLDIILTI--------AK 50 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHc-Chh--------h-----------C--CCCEEEEEcCCHHHHHHHHHH--------HH
Confidence 59999999985 1123334444 110 0 1 568999999999998864320 01
Q ss_pred HHHhhh-cCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.++++. .+-++..|+|.++|+++||+||.++..
T Consensus 51 ~~~~~~g~~~~v~~ttD~~~Al~gADfVi~~irv 84 (425)
T cd05197 51 RYVEEVGADIKFEKTMDLEDAIIDADFVINQFRV 84 (425)
T ss_pred HHHHhhCCCeEEEEeCCHHHHhCCCCEEEEeeec
Confidence 111211 123688999999999999999999754
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0052 Score=69.06 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=55.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.||..++..|.. .|. +|++++++.++.+.+.+... +.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~---------------------------~G~~~V~V~nRs~era~~La~~~~-----g~ 313 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVS---------------------------KGCTKMVVVNRSEERVAALREEFP-----DV 313 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHh---------------------------CCCCeEEEEeCCHHHHHHHHHHhC-----CC
Confidence 4689999999999999999998 675 79999999999988774210 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
........+..+++.++|+||.|++.+
T Consensus 314 --------~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 314 --------EIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred --------ceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 001112245567889999999997654
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0067 Score=64.06 Aligned_cols=88 Identities=9% Similarity=0.118 Sum_probs=61.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|++||+.... ...
T Consensus 148 ktvgIiG~G~IG~~va~~l~~---------------------------fg~~V~~~~~~~~~--~~~------------- 185 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQA---------------------------LGMKVLYAEHKGAS--VCR------------- 185 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhc---------------------------CCCEEEEECCCccc--ccc-------------
Confidence 689999999999999988877 68899999875310 000
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
. . ..++++.++.||+|++++|-...+. .+. -+.....++++.++|+.|--
T Consensus 186 -------~--~-~~~l~ell~~sDiv~l~~Plt~~T~-----------~li--~~~~l~~mk~ga~lIN~aRG 235 (314)
T PRK06932 186 -------E--G-YTPFEEVLKQADIVTLHCPLTETTQ-----------NLI--NAETLALMKPTAFLINTGRG 235 (314)
T ss_pred -------c--c-cCCHHHHHHhCCEEEEcCCCChHHh-----------ccc--CHHHHHhCCCCeEEEECCCc
Confidence 0 0 1367889999999999987432211 111 13455678999999986543
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.029 Score=57.84 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
+||+|||+|.||..++..+.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~ 22 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEH 22 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhh
Confidence 699999999999999999887
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.025 Score=59.78 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=71.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+...+..+.. .++-.+|.+|++++++.+.+.+..
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~-------------------------v~~i~~v~v~~r~~~~a~~~~~~~--------- 173 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKN-------------------------VTDCRQLWVWGRSETALEEYRQYA--------- 173 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHh-------------------------cCCCCEEEEECCCHHHHHHHHHHH---------
Confidence 3679999999999999988887 113469999999999998876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++ ....+..+.+.++++++||+|+.|++... |- +. .+.++++..|.--++-.|+.
T Consensus 174 ---~~-~~~~v~~~~~~~~av~~ADIV~taT~s~~----------P~---~~------~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 174 ---QA-LGFAVNTTLDAAEVAHAANLIVTTTPSRE----------PL---LQ------AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred ---Hh-cCCcEEEECCHHHHhcCCCEEEEecCCCC----------ce---eC------HHHcCCCcEEEecCCCCccc
Confidence 00 01235667889999999999999965432 11 11 24567888887666655544
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=61.77 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..|...+..++. ++ +-.+|.+|++++++.+.+.+..
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~-v~------------------------~i~~v~v~~r~~~~a~~f~~~~--------- 162 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMAS-VY------------------------NPKRIRVYSRNFDHARAFAERF--------- 162 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHh-cC------------------------CCCEEEEECCCHHHHHHHHHHH---------
Confidence 3689999999999999988887 11 3368999999999999876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.+..+..+....++++++.+||+|+.+++.
T Consensus 163 ---~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 163 ---SKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred ---HHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 110112466778999999999999998654
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=57.07 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=63.4
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ .+-+..+++.|..-|.+|.+|||........... .+ ...++.++++
T Consensus 33 ~l~g~tvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~-----------~~-~~~~l~ell~ 90 (178)
T PF02826_consen 33 ELRGKTVGIIGY----------GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF-----------GV-EYVSLDELLA 90 (178)
T ss_dssp -STTSEEEEEST----------SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT-----------TE-EESSHHHHHH
T ss_pred ccCCCEEEEEEE----------cCCcCeEeeeeecCCceeEEecccCChhhhcccc-----------cc-eeeehhhhcc
Confidence 578999999998 4788999999999999999999988755411111 22 3468999999
Q ss_pred CCCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r 506 (598)
.+|+|+++.+-- +-++ +|-+.+ +.|++..+++..-
T Consensus 91 ~aDiv~~~~plt~~T~~li~~~~l-~~mk~ga~lvN~a 127 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGLINAEFL-AKMKPGAVLVNVA 127 (178)
T ss_dssp H-SEEEE-SSSSTTTTTSBSHHHH-HTSTTTEEEEESS
T ss_pred hhhhhhhhhccccccceeeeeeee-eccccceEEEecc
Confidence 999999988732 2233 454444 4566555666544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0098 Score=62.91 Aligned_cols=89 Identities=7% Similarity=0.102 Sum_probs=62.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|++||+... .. .
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~---------------------------fgm~V~~~~~~~~------~~--~-------- 185 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEA---------------------------FGMRVLIGQLPGR------PA--R-------- 185 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhh---------------------------CCCEEEEECCCCC------cc--c--------
Confidence 589999999999999999877 6889999998521 00 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.. ..++++.++.||+|++++|-...+. .+ +-+.....++++.++|+.|--..
T Consensus 186 ---------~~-~~~l~ell~~sDiv~l~lPlt~~T~-----------~l--i~~~~~~~mk~ga~lIN~aRG~v 237 (317)
T PRK06487 186 ---------PD-RLPLDELLPQVDALTLHCPLTEHTR-----------HL--IGARELALMKPGALLINTARGGL 237 (317)
T ss_pred ---------cc-ccCHHHHHHhCCEEEECCCCChHHh-----------cC--cCHHHHhcCCCCeEEEECCCccc
Confidence 00 1367889999999999987432211 11 11345567899999998664433
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.014 Score=61.71 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=52.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+...+..++.-+ +-.+|.+|++++++.+.+.+..
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-------------------------~i~~v~v~~r~~~~~~~~~~~~--------- 173 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-------------------------PIKEVRVYSRSPERAEAFAARL--------- 173 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS---------------------------SEEEEE-SSHHHHHHHHHHH---------
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-------------------------CceEEEEEccChhHHHHHHHhh---------
Confidence 358999999999999999888721 3369999999999998876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.+ ....+..+.|.++++++||+|+.|++..
T Consensus 174 ---~~-~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 174 ---RD-LGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp ---HC-CCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred ---cc-ccccceeccchhhhcccCCEEEEccCCC
Confidence 11 1235788899999999999999996543
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.032 Score=49.33 Aligned_cols=70 Identities=24% Similarity=0.466 Sum_probs=49.2
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCC-C-CCChHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPI-Y-EPGLDE 85 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~-~-e~~~~~ 85 (598)
|.|+|.|.+|..++..|.+ .+++|+++|.++++++.+.....++ + ++.-.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~---------------------------~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~ 53 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE---------------------------GGIDVVVIDRDPERVEELREEGVEVIYGDATDPE 53 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH---------------------------TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHH
T ss_pred eEEEcCCHHHHHHHHHHHh---------------------------CCCEEEEEECCcHHHHHHHhcccccccccchhhh
Confidence 6799999999999999999 6789999999999999988533222 1 111111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.++ +.-+++|+.++++++.
T Consensus 54 ~l~-------------~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 54 VLE-------------RAGIEKADAVVILTDD 72 (116)
T ss_dssp HHH-------------HTTGGCESEEEEESSS
T ss_pred HHh-------------hcCccccCEEEEccCC
Confidence 111 1136789999999643
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.016 Score=60.95 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=51.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||.|.|+ |++|..++..|.+ +||+|++++|++++...+......+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~---------------------------~g~~V~~l~R~~~~~~~l~~~~v~~v----- 48 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALD---------------------------EGYQVRCLVRNLRKASFLKEWGAELV----- 48 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHH---------------------------CCCeEEEEEcChHHhhhHhhcCCEEE-----
Confidence 58999995 9999999999999 89999999999876654432111110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
...+.-..+..++++++|+||-+++.
T Consensus 49 -------~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 49 -------YGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred -------ECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 01121123456678999999988653
|
|
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0098 Score=62.07 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=64.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.+|+|||.|.||.-+|..|.+ +||.|++.||++ -+.+.+..
T Consensus 53 l~IaIIGfGnmGqflAetli~---------------------------aGh~li~hsRsd--yssaa~~y---------- 93 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLID---------------------------AGHGLICHSRSD--YSSAAEKY---------- 93 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHh---------------------------cCceeEecCcch--hHHHHHHh----------
Confidence 589999999999999999999 999999999986 22222210
Q ss_pred HHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEecCCc
Q psy11160 86 VVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-ATDNKIVVEKSTVP 159 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ivv~~STv~ 159 (598)
+....+++.+.+ +..|+|+.||.. ..++.+++..... ++.+++++.-.++-
T Consensus 94 --------g~~~ft~lhdlcerhpDvvLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvK 146 (480)
T KOG2380|consen 94 --------GSAKFTLLHDLCERHPDVVLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVK 146 (480)
T ss_pred --------cccccccHHHHHhcCCCEEEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecc
Confidence 011223343333 678999999732 1356666666555 77889998776663
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.02 Score=60.83 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=56.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+++|||+|.+|...+..|+.. .+ -+|++|++++++.+.+.+...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~--------------------------~~i~~v~V~~R~~~~a~~~a~~~~------- 175 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLV--------------------------RDIRSARIWARDSAKAEALALQLS------- 175 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHh--------------------------CCccEEEEECCCHHHHHHHHHHHH-------
Confidence 35899999999999999999750 34 579999999999988764210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
...........++++++.+||+|+.|+|.+
T Consensus 176 -----~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 176 -----SLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred -----hhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 000112445678888999999999997553
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=66.86 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=54.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC--CCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY--EPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~--e~~ 82 (598)
.++|.|+|.|.+|..+|..|.+ .|++++++|.|+++++.+++...+.+ ++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---------------------------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat 452 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA---------------------------NKMRITVLERDISAVNLMRKYGYKVYYGDAT 452 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh---------------------------CCCCEEEEECCHHHHHHHHhCCCeEEEeeCC
Confidence 3689999999999999999999 89999999999999999875333321 111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
-.+.++ +.-+++||.++++++.+
T Consensus 453 ~~~~L~-------------~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 453 QLELLR-------------AAGAEKAEAIVITCNEP 475 (601)
T ss_pred CHHHHH-------------hcCCccCCEEEEEeCCH
Confidence 111111 11267899999997554
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=60.73 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=53.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|.|||+|-+|.+++..|+. .|. +|+++||+.++.+.+.+...... +
T Consensus 128 k~vlIlGaGGaaraia~aL~~---------------------------~G~~~I~I~nR~~~ka~~la~~l~~~~-~--- 176 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLT---------------------------LGVERLTIFDVDPARAAALADELNARF-P--- 176 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------cCCCEEEEECCCHHHHHHHHHHHHhhC-C---
Confidence 589999999999999999998 675 89999999999988764210000 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
........+..+.+.++|+||-|+|..
T Consensus 177 -------~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 177 -------AARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred -------CeEEEeccchHhhhCCCCEEEECCcCC
Confidence 011222234445678999999997654
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.02 Score=52.05 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=57.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHH-HHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEE-RIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~-~~~~~~~~~~~~~e~~ 82 (598)
|||+|+|+ |.||..++..+.+. .++++. ++|+++. .+ | ..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--------------------------~~~~lv~~v~~~~~~~~-----g------~d 43 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--------------------------PGFELVGAVDRKPSAKV-----G------KD 43 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--------------------------TTEEEEEEEETTTSTTT-----T------SB
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--------------------------CCcEEEEEEecCCcccc-----c------ch
Confidence 69999999 99999999999882 677754 4677651 11 1 11
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
+.++.... ..+...++++++.+..+|++|-.. +|. .+.+.++... +.+.-+|.-+|--
T Consensus 44 ~g~~~~~~-~~~~~v~~~l~~~~~~~DVvIDfT-~p~--------------~~~~~~~~~~---~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 44 VGELAGIG-PLGVPVTDDLEELLEEADVVIDFT-NPD--------------AVYDNLEYAL---KHGVPLVIGTTGF 101 (124)
T ss_dssp CHHHCTSS-T-SSBEBS-HHHHTTH-SEEEEES--HH--------------HHHHHHHHHH---HHT-EEEEE-SSS
T ss_pred hhhhhCcC-CcccccchhHHHhcccCCEEEEcC-ChH--------------HhHHHHHHHH---hCCCCEEEECCCC
Confidence 11111111 234667899999999999988775 331 2333333333 3466677767654
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.028 Score=55.53 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~ 64 (598)
..||+|+|+|-+|+.+|..|+. .|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~---------------------------~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLAR---------------------------AGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHH---------------------------cCCCEEEEECCC
Confidence 3689999999999999999999 787 79999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.034 Score=61.33 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=39.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.++|.|+|+|.+|..++..|.+ .|++|+++|.++++++.+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~---------------------------~~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEK---------------------------EGYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHH
Confidence 4789999999999999999999 79999999999999998875
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0047 Score=67.00 Aligned_cols=43 Identities=30% Similarity=0.362 Sum_probs=38.0
Q ss_pred ceEEEECCChhHH-HHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC
Q psy11160 6 SHICCIGAGYVGG-PTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK 75 (598)
Q Consensus 6 ~~I~viG~G~vG~-~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~ 75 (598)
|||+++|+|.+|. -++..|++ .|++|+++|++++.++.+++..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~---------------------------~g~~V~~vd~~~~~v~aL~~qg 44 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLAD---------------------------NGFEVTFVDVNQELIDALNKRK 44 (381)
T ss_pred CceEEECCchhhHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHhcCC
Confidence 6899999999998 55778887 8999999999999999999653
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.033 Score=59.56 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=52.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHc--CCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNS--NKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~--~~~~~~e~ 81 (598)
++||+|+|+|.||..++..+... ++++|++ .|.+++....+.. | .+.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--------------------------~d~eLvav~d~~~~~~~~la~~~G-~~~~~~ 53 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--------------------------PDMELVGVAKTKPDYEARVAVEKG-YPLYVA 53 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--------------------------CCcEEEEEECCChHHHHHHHHhcC-CCcccc
Confidence 36999999999999999888761 4556555 4556665554443 3 222211
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
..+........++....++.+.+.++|+||.|+|.
T Consensus 54 -~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~ 88 (341)
T PRK04207 54 -DPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPG 88 (341)
T ss_pred -CccccccccCCceEEcCChhHhhccCCEEEECCCc
Confidence 11111000113466777777777899999999654
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.021 Score=61.11 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~ 26 (598)
|+||+|||+ |++|..++..|..
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~ 24 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLN 24 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHc
Confidence 379999997 9999999999987
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.015 Score=60.34 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=69.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++.|+|+|-+|..++..|+. .| .+|++++|+.++.+.+.+.....
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~---------------------------~g~~~V~v~~R~~~~a~~l~~~~~~~------ 170 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLD---------------------------LGVAEITIVNRTVERAEELAKLFGAL------ 170 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHH---------------------------cCCCEEEEEeCCHHHHHHHHHHhhhc------
Confidence 579999999999999999998 77 79999999999988876421100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
....+..+..+.+.++|+||-|+|.+..++. +...+ ....++++.+|++-..-|..|.
T Consensus 171 --------~~~~~~~~~~~~~~~~DivInaTp~g~~~~~-------~~~~~------~~~~l~~~~~v~DivY~P~~T~ 228 (278)
T PRK00258 171 --------GKAELDLELQEELADFDLIINATSAGMSGEL-------PLPPL------PLSLLRPGTIVYDMIYGPLPTP 228 (278)
T ss_pred --------cceeecccchhccccCCEEEECCcCCCCCCC-------CCCCC------CHHHcCCCCEEEEeecCCCCCH
Confidence 0011111333567889999999876653210 00001 0134577889998877666553
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.025 Score=61.34 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=70.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-...+++.|...|.+|.+|||.....+....+ ++....++.++++.
T Consensus 190 L~gktVGIvG~----------G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-----------g~~~~~~l~ell~~ 248 (385)
T PRK07574 190 LEGMTVGIVGA----------GRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-----------GLTYHVSFDSLVSV 248 (385)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-----------CceecCCHHHHhhc
Confidence 57899999998 3678899999999999999999975333222211 23445789999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|+++..... -++ ++ .+..+.|++..++++.-+ +.|.+.+
T Consensus 249 aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL 294 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFD-ADVLSRMKRGSYLVNTARGKIVDRDAV 294 (385)
T ss_pred CCEEEEcCCCCHHHHHHhC-HHHHhcCCCCcEEEECCCCchhhHHHH
Confidence 999999887543 222 34 344556777677877654 4555333
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.013 Score=57.79 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
|||+|||. |.||..++..|.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~ 22 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDD 22 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHh
Confidence 58999999 9999999999998
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.027 Score=60.24 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=57.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+...+..+.. .++-.+|.+|++++++.+.+.+... ++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~-------------------------vr~i~~V~v~~r~~~~a~~~~~~~~---~~--- 177 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKA-------------------------LLGIEEIRLYDIDPAATAKLARNLA---GP--- 177 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHH-------------------------hCCceEEEEEeCCHHHHHHHHHHHH---hc---
Confidence 3579999999999999887776 1134699999999999988764311 00
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
...+....+.++++++||+|+.|+++
T Consensus 178 -------~~~v~~~~~~~~av~~ADIIvtaT~S 203 (346)
T PRK07589 178 -------GLRIVACRSVAEAVEGADIITTVTAD 203 (346)
T ss_pred -------CCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 12356678999999999999999753
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.034 Score=63.36 Aligned_cols=73 Identities=15% Similarity=0.340 Sum_probs=52.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC-CC-CCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP-IY-EPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~-~~-e~~~ 83 (598)
.||.|+|+|.+|..+|..|.+ .|++|+++|.|+++++.+++...+ ++ ++.-
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~---------------------------~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~ 470 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA---------------------------AGIPLVVIETSRTRVDELRERGIRAVLGNAAN 470 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH---------------------------CCCCEEEEECCHHHHHHHHHCCCeEEEcCCCC
Confidence 589999999999999999999 899999999999999998753222 11 1111
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
++.++ +.-+++||.++++++.+
T Consensus 471 ~~~L~-------------~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 471 EEIMQ-------------LAHLDCARWLLLTIPNG 492 (558)
T ss_pred HHHHH-------------hcCccccCEEEEEcCCh
Confidence 11111 11257899999997543
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.026 Score=59.81 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=67.1
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ ..-.-.+++.|..-|.+|..|||+.+.+.... .......++.+.++.
T Consensus 140 l~gkTvGIiG~----------G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~------------~~~~~~~~Ld~lL~~ 197 (324)
T COG0111 140 LAGKTVGIIGL----------GRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV------------DGVVGVDSLDELLAE 197 (324)
T ss_pred ccCCEEEEECC----------CHHHHHHHHHHHhCCCeEEEECCCCchhhhcc------------ccceecccHHHHHhh
Confidence 57999999998 36788999999999999999999877542211 122445789999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|+++++--. -+. ++.+.+. .|++..+++.+.+
T Consensus 198 sDiv~lh~PlT~eT~g~i~~~~~a-~MK~gailIN~aR 234 (324)
T COG0111 198 ADILTLHLPLTPETRGLINAEELA-KMKPGAILINAAR 234 (324)
T ss_pred CCEEEEcCCCCcchhcccCHHHHh-hCCCCeEEEECCC
Confidence 999999886532 233 4555544 5766656665543
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.029 Score=58.07 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=65.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||.|.-|..-|.+|.+ .|.+|++==+.... .+...+
T Consensus 19 K~iaIIGYGsQG~ahalNLRD---------------------------SGlnViiGlr~g~~s~~kA~~----------- 60 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRD---------------------------SGLNVIIGLRKGSSSWKKAKE----------- 60 (338)
T ss_pred CeEEEEecChHHHHHHhhhhh---------------------------cCCcEEEEecCCchhHHHHHh-----------
Confidence 689999999999999999999 89887764442222 222221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR-MIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~ivv~~STv 158 (598)
.++. .-+++++++.||+|++-+|.-. -.++.+ .|.+.++.+..+....-.
T Consensus 61 --------dGf~-V~~v~ea~k~ADvim~L~PDe~---------------q~~vy~~~I~p~Lk~G~aL~FaHGf 111 (338)
T COG0059 61 --------DGFK-VYTVEEAAKRADVVMILLPDEQ---------------QKEVYEKEIAPNLKEGAALGFAHGF 111 (338)
T ss_pred --------cCCE-eecHHHHhhcCCEEEEeCchhh---------------HHHHHHHHhhhhhcCCceEEecccc
Confidence 2233 3567889999999999976532 234554 899999999987665443
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.041 Score=61.62 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.++.|+|+|.+|...+..+.. .|..|+++|+++++.+..++-.....+....+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~---------------------------lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e 217 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANS---------------------------LGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE 217 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence 589999999999999988888 78889999999999888775211111111110
Q ss_pred HHhhhcCCceEEec-C--------HHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 86 VVKKTRDVNLFFST-D--------IKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 86 ~~~~~~~~~~~~~~-~--------~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
- .....+..+..+ + ..+.++++|++|.|+--|-.+ .| .-+.++..+.++++.+||+-|
T Consensus 218 ~-g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-------aP-----~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 218 E-GGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-------AP-----KLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred c-ccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-------CC-----eeehHHHHhhCCCCCEEEEee
Confidence 0 000011111111 1 234578899999998222211 11 112344567889999999988
Q ss_pred CCchHH
Q psy11160 157 TVPVRA 162 (598)
Q Consensus 157 Tv~~~~ 162 (598)
.-+-|.
T Consensus 285 ~d~GGn 290 (511)
T TIGR00561 285 AEQGGN 290 (511)
T ss_pred eCCCCC
Confidence 766664
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.016 Score=55.59 Aligned_cols=54 Identities=20% Similarity=0.447 Sum_probs=44.4
Q ss_pred CceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|.|||.|.| |.++|..|.. .|.+|++.+++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~---------------------------~g~~V~v~~r~~------------------ 78 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLN---------------------------RNATVTVCHSKT------------------ 78 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh---------------------------CCCEEEEEECCc------------------
Confidence 368999999985 9999999999 788899999752
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.+..+.+.+||+||.+++.|
T Consensus 79 ---------------~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 79 ---------------KNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred ---------------hhHHHHHhhCCEEEEcCCCC
Confidence 12345788999999998776
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.018 Score=54.99 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=67.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC---
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG--- 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~--- 82 (598)
.+|+|+|.|.+|...+..+.. .|++|+.+|.++++.++++.......+..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~---------------------------lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 73 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKG---------------------------LGAEVVVPDERPERLRQLESLGAYFIEVDYED 73 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHH---------------------------TT-EEEEEESSHHHHHHHHHTTTEESEETTTT
T ss_pred eEEEEECCCHHHHHHHHHHhH---------------------------CCCEEEeccCCHHHHHhhhcccCceEEEcccc
Confidence 589999999999999999999 89999999999999988775322111000
Q ss_pred ------hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 83 ------LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 83 ------~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.+....... -........+.++.+|+||.+.--+... .| .-+.++-.+.++++.+|++-|
T Consensus 74 ~~~~~~~~~~~~~~~--~~~~~~~f~~~i~~~d~vI~~~~~~~~~-------~P-----~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 74 HLERKDFDKADYYEH--PESYESNFAEFIAPADIVIGNGLYWGKR-------AP-----RLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp TTTSB-CCHHHCHHH--CCHHHHHHHHHHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETT
T ss_pred cccccccchhhhhHH--HHHhHHHHHHHHhhCcEEeeecccCCCC-------CC-----EEEEhHHhhccCCCceEEEEE
Confidence 000000000 0011123456788999999876444321 11 112344456688999999876
Q ss_pred CCc
Q psy11160 157 TVP 159 (598)
Q Consensus 157 Tv~ 159 (598)
.=.
T Consensus 140 ~D~ 142 (168)
T PF01262_consen 140 CDQ 142 (168)
T ss_dssp GGG
T ss_pred ecC
Confidence 543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.016 Score=60.13 Aligned_cols=98 Identities=22% Similarity=0.394 Sum_probs=70.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||+|||.|.+|.--|....- -|-+|+..|+|.+|++++..-
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~g---------------------------lgA~Vtild~n~~rl~~ldd~----------- 210 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIG---------------------------LGADVTILDLNIDRLRQLDDL----------- 210 (371)
T ss_pred ccEEEECCccccchHHHHHhc---------------------------cCCeeEEEecCHHHHhhhhHh-----------
Confidence 589999999999998877666 688999999999999886631
Q ss_pred HHhhhcCCceEEe--cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 86 VVKKTRDVNLFFS--TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 86 ~~~~~~~~~~~~~--~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.... -....+ .++++++.++|++|=+|-.|-.+ .| +-+.++..+.++++.++|+-.
T Consensus 211 -f~~r--v~~~~st~~~iee~v~~aDlvIgaVLIpgak-------aP-----kLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 211 -FGGR--VHTLYSTPSNIEEAVKKADLVIGAVLIPGAK-------AP-----KLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred -hCce--eEEEEcCHHHHHHHhhhccEEEEEEEecCCC-------Cc-----eehhHHHHHhcCCCcEEEEEE
Confidence 1000 011112 34678899999999888666432 22 224577788899999998743
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.017 Score=63.35 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=55.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|.|||+|-||..+|..|+. .| .++++++|+.++.+.+.+....
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~---------------------------~g~~~I~V~nRt~~ra~~La~~~~~------ 227 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTA---------------------------LAPKQIMLANRTIEKAQKITSAFRN------ 227 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH---------------------------cCCCEEEEECCCHHHHHHHHHHhcC------
Confidence 3689999999999999999998 66 4899999999999887752100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.......+..+.+.++|+||.|++.|.
T Consensus 228 ---------~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 228 ---------ASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred ---------CeEecHHHHHHHhccCCEEEECcCCCC
Confidence 011222445567899999999987764
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.028 Score=60.26 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
+||+|+|+ |++|..+...|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~ 22 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLN 22 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 58999999 9999999999987
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.046 Score=53.32 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=52.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+++.|+|. |.+|..++..|++ .|++|++++++.++.+.+.+.... ..
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~---------------------------~g~~V~l~~R~~~~~~~l~~~l~~--~~-- 76 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR---------------------------EGARVVLVGRDLERAQKAADSLRA--RF-- 76 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHHHHHh--hc--
Confidence 368999996 9999999999999 789999999999988776532100 00
Q ss_pred HHHHhhhcCCceEEe--cC---HHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFS--TD---IKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~--~~---~~~~~~~adviii~v~tp 118 (598)
...+... .+ ..++++++|+||.++|.+
T Consensus 77 --------~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 77 --------GEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred --------CCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 0111111 22 245788999999886544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.041 Score=63.53 Aligned_cols=74 Identities=14% Similarity=0.331 Sum_probs=53.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC--CCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY--EPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~--e~~ 82 (598)
..+|.|+|.|.+|..+|..|.+ .|++++++|.|+++++.+++...+++ ++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---------------------------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS---------------------------SGVKMTVLDHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh---------------------------CCCCEEEEECCHHHHHHHHhcCCeEEEEeCC
Confidence 3689999999999999999999 89999999999999999875333322 111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
-.+.++ +.-+++||.++++++.+
T Consensus 453 ~~~~L~-------------~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 453 RMDLLE-------------SAGAAKAEVLINAIDDP 475 (621)
T ss_pred CHHHHH-------------hcCCCcCCEEEEEeCCH
Confidence 111111 11356899999997543
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.022 Score=63.60 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=64.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++++|+|+|-+|.+++..|++ .|++|++++++.++.+.+.+...
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~---------------------------~G~~V~i~~R~~~~~~~la~~~~-------- 376 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLAR---------------------------AGAELLIFNRTKAHAEALASRCQ-------- 376 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHHhc--------
Confidence 3689999999999999999999 78999999999998887764210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.......+.. .+.++|+||.|+|.... +.+. + . .+|++.++.|+.|.
T Consensus 377 --------~~~~~~~~~~-~l~~~DiVInatP~g~~--------------~~~~---l----~--~~v~D~~Y~P~~T~ 423 (477)
T PRK09310 377 --------GKAFPLESLP-ELHRIDIIINCLPPSVT--------------IPKA---F----P--PCVVDINTLPKHSP 423 (477)
T ss_pred --------cceechhHhc-ccCCCCEEEEcCCCCCc--------------chhH---H----h--hhEEeccCCCCCCH
Confidence 0000011121 25789999999865421 1111 1 1 38899999998776
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.036 Score=60.17 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=70.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ .+-+..+++.|...|.+|.+|||.....+..... ++....++.++++
T Consensus 196 ~L~gktVGIVG~----------G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-----------g~~~~~~l~ell~ 254 (386)
T PLN03139 196 DLEGKTVGTVGA----------GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-----------GAKFEEDLDAMLP 254 (386)
T ss_pred CCCCCEEEEEee----------cHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-----------CceecCCHHHHHh
Confidence 357999999997 3677899999999999999999974322221111 2234568999999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|+|+++....+ .++ ++- .+.+.|++..+++++-+ +.|.+.+
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~-~~l~~mk~ga~lIN~aRG~iVDe~AL 301 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNK-ERIAKMKKGVLIVNNARGAIMDTQAV 301 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCH-HHHhhCCCCeEEEECCCCchhhHHHH
Confidence 9999999887433 333 343 45567777778888644 4565443
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.064 Score=56.16 Aligned_cols=96 Identities=13% Similarity=0.193 Sum_probs=58.4
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHH--HHHHcCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERI--RQWNSNKLP 77 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~--~~~~~~~~~ 77 (598)
||++ .||+|||+|.+|..+...+.+ . .+.++. ++|+|++.. +..++-..+
T Consensus 1 ~m~k-lrVAIIGtG~IGt~hm~~l~~-~-------------------------~~velvAVvdid~es~gla~A~~~Gi~ 53 (302)
T PRK08300 1 MMSK-LKVAIIGSGNIGTDLMIKILR-S-------------------------EHLEPGAMVGIDPESDGLARARRLGVA 53 (302)
T ss_pred CCCC-CeEEEEcCcHHHHHHHHHHhc-C-------------------------CCcEEEEEEeCChhhHHHHHHHHcCCC
Confidence 5554 699999999999997777765 1 455655 578887642 332322122
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHh-----ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAI-----QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv 152 (598)
.+ ..++++.+ .+.|+||+++|...+ .+.....+..|+.|
T Consensus 54 ~~------------------~~~ie~LL~~~~~~dIDiVf~AT~a~~H------------------~e~a~~a~eaGk~V 97 (302)
T PRK08300 54 TS------------------AEGIDGLLAMPEFDDIDIVFDATSAGAH------------------VRHAAKLREAGIRA 97 (302)
T ss_pred cc------------------cCCHHHHHhCcCCCCCCEEEECCCHHHH------------------HHHHHHHHHcCCeE
Confidence 22 23344343 468999999754321 12233345678888
Q ss_pred EEecCCc
Q psy11160 153 VEKSTVP 159 (598)
Q Consensus 153 v~~STv~ 159 (598)
++.|...
T Consensus 98 ID~sPA~ 104 (302)
T PRK08300 98 IDLTPAA 104 (302)
T ss_pred EECCccc
Confidence 8887654
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.04 Score=59.78 Aligned_cols=77 Identities=10% Similarity=0.250 Sum_probs=57.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+......++.-.|+ --+|.+|++++++.+.+.+..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~------------------------i~~V~v~~r~~~~a~~f~~~~--------- 201 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPG------------------------IDTIKIKGRGQKSLDSFATWV--------- 201 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCC------------------------ccEEEEECCCHHHHHHHHHHH---------
Confidence 36899999999999999988872111 258999999999998876421
Q ss_pred HHHhhhcC-C-ceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRD-V-NLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~-~-~~~~~~~~~~~~~~adviii~v~t 117 (598)
..... . .+..+.+.++++++||+|+.|++.
T Consensus 202 ---~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 202 ---AETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred ---HHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 00000 1 266788999999999999999653
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.024 Score=61.67 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=57.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||+|-||.-.|..|+. .| .+|++.+|+.++...+.+...
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~---------------------------~g~~~i~IaNRT~erA~~La~~~~------- 223 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAE---------------------------KGVKKITIANRTLERAEELAKKLG------- 223 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHh---------------------------CCCCEEEEEcCCHHHHHHHHHHhC-------
Confidence 3689999999999999999999 67 699999999999998875311
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.....-++..+.+.++|+||.|+..|.
T Consensus 224 ---------~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 224 ---------AEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ---------CeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 112233456678999999999976553
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.035 Score=58.89 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=74.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
...++|||+|..+......+.. ....-+|.+|+++++..+.+.+...
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~-------------------------v~~~~~I~i~~r~~~~~e~~a~~l~-------- 176 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKA-------------------------VRDIREIRVYSRDPEAAEAFAARLR-------- 176 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHh-------------------------hCCccEEEEEcCCHHHHHHHHHHHH--------
Confidence 3578999999999999999988 1145689999999999998774210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+..........+.++++++||+|+.|+|+.. |- + -.+.++++..|...++-.|+..
T Consensus 177 ----~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~----------Pi---l------~~~~l~~G~hI~aiGad~p~k~ 232 (330)
T COG2423 177 ----KRGGEAVGAADSAEEAVEGADIVVTATPSTE----------PV---L------KAEWLKPGTHINAIGADAPGKR 232 (330)
T ss_pred ----hhcCccceeccCHHHHhhcCCEEEEecCCCC----------Ce---e------cHhhcCCCcEEEecCCCCcccc
Confidence 0001135678899999999999999976532 11 1 1345678888877666666554
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.028 Score=58.38 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=57.3
Q ss_pred CceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||.|.+ |.|+|..|.. .|..|+++..
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~---------------------------~~atVt~~hs-------------------- 190 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQ---------------------------AGATVTICHS-------------------- 190 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---------------------------CCCEEEEecC--------------------
Confidence 368999999888 9999999998 7889998642
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
-|.++.+.+++||+||.++|+|-- +. ...++++.+||+-++-
T Consensus 191 -------------~t~~l~~~~~~ADIVV~avG~~~~--------------i~------~~~ik~gavVIDVGin 232 (285)
T PRK14189 191 -------------KTRDLAAHTRQADIVVAAVGKRNV--------------LT------ADMVKPGATVIDVGMN 232 (285)
T ss_pred -------------CCCCHHHHhhhCCEEEEcCCCcCc--------------cC------HHHcCCCCEEEEcccc
Confidence 134566788999999999987731 11 1567899999986653
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.095 Score=56.73 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=67.7
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|||+|+ .+-+-.+++.|...|.+|.+|||...... . . ....++.++++
T Consensus 113 ~L~gktvGIIG~----------G~IG~~vA~~l~a~G~~V~~~dp~~~~~~-------------~--~-~~~~~L~ell~ 166 (378)
T PRK15438 113 SLHDRTVGIVGV----------GNVGRRLQARLEALGIKTLLCDPPRADRG-------------D--E-GDFRSLDELVQ 166 (378)
T ss_pred CcCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCcccccc-------------c--c-cccCCHHHHHh
Confidence 468999999998 36778899999999999999999542110 0 0 12357889999
Q ss_pred CCCEEEEEeeccc------hhhccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWDE------FVTLDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~~------f~~ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|+|++++.... +.=+|-+. .+.|++..++|++.+ +.|.+.+
T Consensus 167 ~sDiI~lh~PLt~~g~~~T~~li~~~~-l~~mk~gailIN~aRG~vVDe~AL 217 (378)
T PRK15438 167 EADILTFHTPLFKDGPYKTLHLADEKL-IRSLKPGAILINACRGAVVDNTAL 217 (378)
T ss_pred hCCEEEEeCCCCCCcccccccccCHHH-HhcCCCCcEEEECCCchhcCHHHH
Confidence 9999998887432 22245444 445776667777655 5665444
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.088 Score=59.09 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=68.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC--CCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY--EPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~--e~~ 82 (598)
-.||.|+|+|.+|+..+..+.. .|-+|+++|+++++.+..++-...+. ++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~---------------------------lGA~V~a~D~~~~rle~aeslGA~~v~i~~~ 217 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS---------------------------LGAIVRAFDTRPEVAEQVESMGAEFLELDFE 217 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHcCCeEEEeccc
Confidence 3689999999999998888777 67899999999999998875221110 110
Q ss_pred hHHHHhhhcCCce-EEecCH--------HHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 83 LDEVVKKTRDVNL-FFSTDI--------KSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~--------~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
-++... .+.. ..+.+. .+.++++|++|.|+..|..+ .+ ..+.++..+.++++.+|+
T Consensus 218 e~~~~~---~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~-------aP-----~lit~~~v~~mkpGgvIV 282 (509)
T PRK09424 218 EEGGSG---DGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKP-------AP-----KLITAEMVASMKPGSVIV 282 (509)
T ss_pred cccccc---cchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCccc-------Cc-----chHHHHHHHhcCCCCEEE
Confidence 000000 0000 011221 12235799999999776421 11 112355566778888888
Q ss_pred EecCC
Q psy11160 154 EKSTV 158 (598)
Q Consensus 154 ~~STv 158 (598)
+-+.-
T Consensus 283 dvg~~ 287 (509)
T PRK09424 283 DLAAE 287 (509)
T ss_pred EEccC
Confidence 77653
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.069 Score=56.55 Aligned_cols=103 Identities=10% Similarity=0.120 Sum_probs=68.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|+|+|.+|..+|..|.. .|..+.-+.+++...+...+-
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~---------------------------Fg~~i~y~~r~~~~~~~~~~~---------- 204 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKP---------------------------FGCVILYHSRTQLPPEEAYEY---------- 204 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhh---------------------------ccceeeeecccCCchhhHHHh----------
Confidence 3689999999999999999998 563344444544434333211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
... ..|..+.+.++|+|++|.|-.. .....+ +.+...++++.++|+.+--....-
T Consensus 205 ---------~~~-~~d~~~~~~~sD~ivv~~pLt~--------------~T~~liNk~~~~~mk~g~vlVN~aRG~iide 260 (336)
T KOG0069|consen 205 ---------YAE-FVDIEELLANSDVIVVNCPLTK--------------ETRHLINKKFIEKMKDGAVLVNTARGAIIDE 260 (336)
T ss_pred ---------ccc-ccCHHHHHhhCCEEEEecCCCH--------------HHHHHhhHHHHHhcCCCeEEEeccccccccH
Confidence 011 3456678899999999975422 223333 678889999999998766666555
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 261 ~~l~e 265 (336)
T KOG0069|consen 261 EALVE 265 (336)
T ss_pred HHHHH
Confidence 55544
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.21 Score=55.04 Aligned_cols=116 Identities=13% Similarity=0.216 Sum_probs=67.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH-HHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE-ERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~-~~~~~~~~~~~~~~e~~~ 83 (598)
.++|.|+|.|.+|.++|..|++ .|++|+++|++. +.++....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~---------- 47 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK---------------------------LGAKVILTDEKEEDQLKEALE---------- 47 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCchHHHHHHHH----------
Confidence 4789999999999999999999 899999999985 33322110
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~~S 156 (598)
++ .+ ....+.......+...++|+||.+...+.+ .+.+.+.++ -.+.+....+ ..+|-+..
T Consensus 48 -~l-~~-~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~--------~~~~~~a~~~~i~~~~~~~~~~~~~~-~~vI~ITG 115 (450)
T PRK14106 48 -EL-GE-LGIELVLGEYPEEFLEGVDLVVVSPGVPLD--------SPPVVQAHKKGIEVIGEVELAYRFSK-APIVAITG 115 (450)
T ss_pred -HH-Hh-cCCEEEeCCcchhHhhcCCEEEECCCCCCC--------CHHHHHHHHCCCcEEeHHHHHHhhcC-CCEEEEeC
Confidence 00 00 001122222223345789999998654321 122221111 0012222233 67888888
Q ss_pred CCchHHHHHHHHH
Q psy11160 157 TVPVRAAESIMNV 169 (598)
Q Consensus 157 Tv~~~~~~~~~~~ 169 (598)
|.--.||.++...
T Consensus 116 S~GKTTt~~~l~~ 128 (450)
T PRK14106 116 TNGKTTTTTLLGE 128 (450)
T ss_pred CCchHHHHHHHHH
Confidence 8877777665543
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.058 Score=56.18 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=57.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHH--HHHcCCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIR--QWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~--~~~~~~~~~~e~~ 82 (598)
++|+|||+|.+|.-++..+.. . .+.++. ++|+++++.. ..++-..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~-~-------------------------~~~elvaV~d~d~es~~la~A~~~Gi------ 49 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLR-S-------------------------EHLEMVAMVGIDPESDGLARARELGV------ 49 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHh-C-------------------------CCcEEEEEEeCCcccHHHHHHHHCCC------
Confidence 589999999999988777765 1 455655 4788876532 2221111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
-...+++++.++ +.|+||+++|+..+ .+.....+..|+.|++++...
T Consensus 50 ------------~~~~~~~e~ll~~~dIDaV~iaTp~~~H------------------~e~a~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 50 ------------KTSAEGVDGLLANPDIDIVFDATSAKAH------------------ARHARLLAELGKIVIDLTPAA 98 (285)
T ss_pred ------------CEEECCHHHHhcCCCCCEEEECCCcHHH------------------HHHHHHHHHcCCEEEECCccc
Confidence 123445665554 57899999876542 122334456788888777654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.054 Score=61.33 Aligned_cols=100 Identities=24% Similarity=0.324 Sum_probs=70.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||....+.... + ++....++.++++.
T Consensus 136 l~gktvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~-----------g~~~~~~l~ell~~ 193 (525)
T TIGR01327 136 LYGKTLGVIGL----------GRIGSIVAKRAKAFGMKVLAYDPYISPERAEQ-L-----------GVELVDDLDELLAR 193 (525)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEECCCCChhHHHh-c-----------CCEEcCCHHHHHhh
Confidence 57899999998 36778999999999999999999754432211 1 22445689999999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|+++.+.. +-++ ++-+ ..+.|++..+++++.+ +.|.+.+
T Consensus 194 aDvV~l~lPlt~~T~~li~~~-~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAE-ELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCEEEEccCCChhhccCcCHH-HHhcCCCCeEEEEcCCCceeCHHHH
Confidence 99999998865 3333 3433 3446777667777654 4565433
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.05 Score=59.39 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=56.8
Q ss_pred CceEEEECCChhHHHHHHH-HHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..||+|||.|..+.|--.. +..+.|.+ ++.++.++|+++++.+....- .
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l----------------------~~~el~L~Did~~r~~~i~~~--------~ 52 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEEL----------------------PVRELALYDIDEERLKIIAIL--------A 52 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccC----------------------CcceEEEEeCCHHHHHHHHHH--------H
Confidence 4699999999999885321 22212222 678999999999998843310 1
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecC
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
+.++++. .+.++..|+|.++|+++||+|+.++.
T Consensus 53 ~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi~~~r 86 (442)
T COG1486 53 KKLVEEAGAPVKVEATTDRREALEGADFVITQIR 86 (442)
T ss_pred HHHHHhhCCCeEEEEecCHHHHhcCCCEEEEEEe
Confidence 1223221 23458899999999999999999974
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.089 Score=56.20 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=33.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~ 72 (598)
++|.|||+|-+|+++|..|+. .|+ +++++|.|.-....++
T Consensus 25 ~~VlIiG~GglGs~va~~La~---------------------------aGvg~i~lvD~D~ve~sNL~ 65 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVR---------------------------AGIGKLTIADRDYVEWSNLQ 65 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------cCCCEEEEEcCCcccccccC
Confidence 689999999999999999999 786 8999999864444443
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.054 Score=56.35 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=56.6
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||.|. ||.|+|..|.. .|..|+++++..
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~---------------------------~gatVtv~~s~t------------------ 192 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQ---------------------------KNASVTILHSRS------------------ 192 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHH---------------------------CCCeEEEEeCCc------------------
Confidence 36899999988 99999999998 788999987531
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.++.+.+++||+||.+++.|.- +.. ..++++.+||+-++-
T Consensus 193 ---------------~~l~~~~~~ADIVIsAvg~p~~--------------i~~------~~vk~gavVIDvGi~ 232 (286)
T PRK14175 193 ---------------KDMASYLKDADVIVSAVGKPGL--------------VTK------DVVKEGAVIIDVGNT 232 (286)
T ss_pred ---------------hhHHHHHhhCCEEEECCCCCcc--------------cCH------HHcCCCcEEEEcCCC
Confidence 2355678999999999987731 111 246789999886653
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.048 Score=57.90 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=33.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~ 72 (598)
|+|.|.|+ |++|..++..|.. . |++|+++|++.++...+.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~---------------------------~~~~~V~~~~r~~~~~~~~~ 43 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILE---------------------------TTDWEVYGMDMQTDRLGDLV 43 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHh---------------------------CCCCeEEEEeCcHHHHHHhc
Confidence 68999997 9999999999987 4 699999999877655443
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.077 Score=54.43 Aligned_cols=67 Identities=9% Similarity=0.133 Sum_probs=47.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||++||+|++|..++..|... .. .+++ +.++++++++.+.+...
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~-----------------------~~-~~~~l~~V~~~~~~~~~~~~~~--------- 48 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLAD-----------------------AA-QPCQLAALTRNAADLPPALAGR--------- 48 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcC-----------------------CC-CceEEEEEecCCHHHHHHhhcc---------
Confidence 46999999999999999998760 00 2354 44578888887776532
Q ss_pred HHHHhhhcCCceEEecCHHHH-hccCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSA-IQKAQLIFISV 115 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~adviii~v 115 (598)
....+|+++. ..++|+|+-|-
T Consensus 49 -----------~~~~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 49 -----------VALLDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred -----------CcccCCHHHHhhcCCCEEEECC
Confidence 2245566664 47789999884
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.12 Score=55.32 Aligned_cols=105 Identities=10% Similarity=0.183 Sum_probs=68.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
..||+|||+ .+|...+..+.. . . +++++ ++|+++++.+.+.+..
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~-------------------------~-~~~~eLvaV~d~~~erA~~~A~~~------- 48 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAA-------------------------A-PERFELAGILAQGSERSRALAHRL------- 48 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHh-------------------------C-CCCcEEEEEEcCCHHHHHHHHHHh-------
Confidence 368999999 569888888877 0 2 45655 5899999998877521
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++...+|+++.+++.|+++|++||..-.. . . .+.....+..|+-|+.+=.+....
T Consensus 49 -----------gi~~y~~~eell~d~Di~~V~ipt~~P~~-------~---H----~e~a~~aL~aGkHVL~EKPla~~E 103 (343)
T TIGR01761 49 -----------GVPLYCEVEELPDDIDIACVVVRSAIVGG-------Q---G----SALARALLARGIHVLQEHPLHPRD 103 (343)
T ss_pred -----------CCCccCCHHHHhcCCCEEEEEeCCCCCCc-------c---H----HHHHHHHHhCCCeEEEcCCCCHHH
Confidence 12245788888888999999987632100 0 1 122334456777777776666555
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
++++.+
T Consensus 104 a~el~~ 109 (343)
T TIGR01761 104 IQDLLR 109 (343)
T ss_pred HHHHHH
Confidence 555543
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.57 Score=50.56 Aligned_cols=259 Identities=12% Similarity=0.147 Sum_probs=134.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH----HHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR----QWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~----~~~~~~~~~~e 80 (598)
|.+|-|+|.|.++..+|..|.+. -..+|-.+.|...+-+ .++++...+ +
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~--------------------------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~-~ 53 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH--------------------------GNCRVGIVGRESVRSQRFFEALARSDGLF-E 53 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc--------------------------cCceeeeecCcchhHHHHHHHHHhCCCEE-E
Confidence 36899999999999999999881 1235666666544433 344421111 1
Q ss_pred CChHHHHhhhcCCce---EEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-cC-CCcEEEEe
Q psy11160 81 PGLDEVVKKTRDVNL---FFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-AT-DNKIVVEK 155 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~-~~~ivv~~ 155 (598)
-....-......+.. .+..++++...+=|.+|+|||++ +-.+++++|... ++ =.++|.++
T Consensus 54 v~vqn~~h~~l~G~~~id~~~~~~~~i~g~WdtlILavtaD---------------AY~~VL~ql~~~~L~~vk~iVLvS 118 (429)
T PF10100_consen 54 VSVQNEQHQALSGECTIDHVFQDYEEIEGEWDTLILAVTAD---------------AYLDVLQQLPWEVLKRVKSIVLVS 118 (429)
T ss_pred EeecchhhhhhcCeEEhhHhhcCHHHhcccccEEEEEechH---------------HHHHHHHhcCHHHHhhCCEEEEEC
Confidence 111000001111211 13356776777889999998775 244555555432 22 25688888
Q ss_pred cCCchHHH-HHHHHHHhhccC--CcccccCCCCCchHHHHHHHHHHHHhcCCceE---EEeccccchhh-------hhHH
Q psy11160 156 STVPVRAA-ESIMNVLKANHK--TNVQFQGRAADLKYVEAAARMIAEIATDNKIV---VEKSTVPVRAA-------ESIM 222 (598)
Q Consensus 156 STv~~~~~-~~~~~~l~~~~~--~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lv---v~eSTvP~gtt-------~~~~ 222 (598)
+|..-+.. +.+.. .... +---+...--|..++... +...| -++..+..|.| ..++
T Consensus 119 PtfGS~~lv~~~l~---~~~~~~EVISFStY~gdTr~~d~~---------~~~~vlt~~vK~kiYigSt~~~s~~~~~l~ 186 (429)
T PF10100_consen 119 PTFGSHLLVKGFLN---DLGPDAEVISFSTYYGDTRWSDGE---------QPNRVLTTAVKKKIYIGSTHSNSPELDKLC 186 (429)
T ss_pred cccchHHHHHHHHH---hcCCCceEEEeecccccceeccCC---------CcceehhhhhhceEEEEeCCCCChHHHHHH
Confidence 88754443 22222 1110 000000111111111110 11111 12333334433 2333
Q ss_pred HHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEE---ecCchhHHH
Q psy11160 223 NVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHIL---TTNTWSSEL 299 (598)
Q Consensus 223 ~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~---~~~~~~Ae~ 299 (598)
.+++. .|.+...+.+|.- .+++.+....+|+.+| ++- + |+.+|..-....-++ -.++-+-++
T Consensus 187 ~~~~~---~gI~~~~~~~pl~-AE~rNislYVHpplfm--ndf------s---L~aIF~~~~~~kYvYKL~PEGPIT~~~ 251 (429)
T PF10100_consen 187 RLLAQ---LGIQLEVMDNPLE-AESRNISLYVHPPLFM--NDF------S---LNAIFEEDGVPKYVYKLFPEGPITPTL 251 (429)
T ss_pred HHHHH---cCCeEEEeCChHh-hhhcccceecCChHhh--Chh------h---HHHHhCCCCCcceEEecCCCCCCCHHH
Confidence 34443 4677778888864 4677778888888765 221 2 456776644222122 134444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 300 SKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 300 ~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
+.-+ .....|+..+-.++|++.-.+++.++-+.
T Consensus 252 I~~M--------~~lw~Ei~~i~~~l~~~~~NLLkFm~ddN 284 (429)
T PF10100_consen 252 IRDM--------VQLWKEIMEILNKLGIEPFNLLKFMNDDN 284 (429)
T ss_pred HHHH--------HHHHHHHHHHHHHcCCCcchHHHHhccCC
Confidence 4322 33456888999999999999999998753
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.048 Score=59.16 Aligned_cols=96 Identities=19% Similarity=0.292 Sum_probs=57.5
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|+|+ ||+|..+...|... ++++|+.+..+...-+.+.... |.+
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h--------------------------P~~el~~l~s~~saG~~i~~~~-----~~l 86 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH--------------------------PDFEITVMTADRKAGQSFGSVF-----PHL 86 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC--------------------------CCCeEEEEEChhhcCCCchhhC-----ccc
Confidence 469999998 99999999999881 4678888876533322221111 100
Q ss_pred HHHHhhhcCCceE-E-ecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLF-F-STDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~-~-~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
. ..... + ..+.. .++++|++|+|+|.. +...+.+.+..++.||+.|+-
T Consensus 87 ~-------~~~~~~~~~~~~~-~~~~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 87 I-------TQDLPNLVAVKDA-DFSDVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSAD 136 (381)
T ss_pred c-------CccccceecCCHH-HhcCCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCch
Confidence 0 00011 1 12222 368999999998642 223344444567888888875
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.16 Score=56.21 Aligned_cols=134 Identities=14% Similarity=0.176 Sum_probs=82.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC--CHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK--SEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~--~~~~~~~~~~~~~~~~e~~ 82 (598)
-+|+|-|+ |.+|.+|.-.+|. +.++|.. +-..+.++|+ +.++++...- +
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~-------------------G~~fG~~-~~v~L~LlDi~~~~~~l~G~am--------D 175 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLAS-------------------GEVFGME-EEISIHLLDSPENLEKLKGLVM--------E 175 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhC-------------------CcccCCC-CeEEEEEEcCCCchhhHHHHHH--------H
Confidence 47999987 9999999999998 5666654 3467889999 5666654221 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.+...... .+...+++..+++++||+||++...|.++..++.+ -..+.+.+++..+.|.++.++..=|++--|-|..
T Consensus 176 L~D~a~pll-~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD 254 (452)
T cd05295 176 VEDLAFPLL-RGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN 254 (452)
T ss_pred HHHhHHhhc-CCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH
Confidence 111000001 23455566667999999999998888765432111 1223445556666677777644444444566776
Q ss_pred HHHHHHH
Q psy11160 162 AAESIMN 168 (598)
Q Consensus 162 ~~~~~~~ 168 (598)
+.-.++.
T Consensus 255 ~~t~i~~ 261 (452)
T cd05295 255 LKTSILI 261 (452)
T ss_pred HHHHHHH
Confidence 6655544
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.09 Score=56.05 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=69.1
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||...... ... . ... ..++.++++.
T Consensus 148 L~gktvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~-------~----~~~-~~~l~ell~~ 204 (333)
T PRK13243 148 VYGKTIGIIGF----------GRIGQAVARRAKGFGMRILYYSRTRKPEA-EKE-------L----GAE-YRPLEELLRE 204 (333)
T ss_pred CCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCCCChhh-HHH-------c----CCE-ecCHHHHHhh
Confidence 57999999998 36778899999999999999999754321 111 1 112 2578899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|++++.... -++ ++- +..+.|++..++++..+ +.|.+.+
T Consensus 205 aDiV~l~lP~t~~T~~~i~~-~~~~~mk~ga~lIN~aRg~~vd~~aL 250 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINE-ERLKLMKPTAILVNTARGKVVDTKAL 250 (333)
T ss_pred CCEEEEeCCCChHHhhccCH-HHHhcCCCCeEEEECcCchhcCHHHH
Confidence 999999998754 222 343 44556777777777654 4555333
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.045 Score=58.97 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|+.+.|+|.|.|. |++|..++..|.+ .||+|+++|+..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~---------------------------~G~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKA---------------------------EGHYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHh---------------------------CCCEEEEEEecc
Confidence 5666789999998 9999999999999 899999999854
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.088 Score=56.06 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=67.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||...... . ...+..++.+++++
T Consensus 144 l~g~~VgIIG~----------G~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~-------------~~~~~~~l~ell~~ 198 (330)
T PRK12480 144 VKNMTVAIIGT----------GRIGAATAKIYAGFGATITAYDAYPNKDL--D-------------FLTYKDSVKEAIKD 198 (330)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEEeCChhHhh--h-------------hhhccCCHHHHHhc
Confidence 46889999998 36678899999999999999998653211 0 11344678899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecC-C-CCCh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGR-K-ILNH 511 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r-~-i~d~ 511 (598)
+|+|+++.+... .+. ++ ..+...|++..+++++. + +.|.
T Consensus 199 aDiVil~lP~t~~t~~li~-~~~l~~mk~gavlIN~aRG~~vd~ 241 (330)
T PRK12480 199 ADIISLHVPANKESYHLFD-KAMFDHVKKGAILVNAARGAVINT 241 (330)
T ss_pred CCEEEEeCCCcHHHHHHHh-HHHHhcCCCCcEEEEcCCccccCH
Confidence 999999998764 222 33 45566787766777764 3 4454
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.13 Score=53.34 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=56.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||++||.|.+-++.- .|+++ ++.+..|.++|+|++.++..++=.. ...++
T Consensus 122 ~rVaFIGSGPLPlT~i-~la~~------------------------~~~~~~v~~iD~d~~A~~~a~~lv~--~~~~L-- 172 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSI-VLAKQ------------------------HGPGARVHNIDIDPEANELARRLVA--SDLGL-- 172 (276)
T ss_dssp -EEEEE---SS-HHHH-HHH--------------------------HTT--EEEEEESSHHHHHHHHHHHH-----HH--
T ss_pred ceEEEEcCCCcchHHH-HHHHH------------------------hCCCCeEEEEeCCHHHHHHHHHHHh--hcccc--
Confidence 4899999999988765 44430 1145689999999999886542000 00111
Q ss_pred HHhhhcCCceEEe-cCHH---HHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 86 VVKKTRDVNLFFS-TDIK---SAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 86 ~~~~~~~~~~~~~-~~~~---~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
..++++. .|.. ..+.+.|+|+++.--..+ -+.=.++++.+.+.+++|.+|+.+|.-..+
T Consensus 173 ------~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~-----------~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 173 ------SKRMSFITADVLDVTYDLKEYDVVFLAALVGMD-----------AEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp -------SSEEEEES-GGGG-GG----SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred ------cCCeEEEecchhccccccccCCEEEEhhhcccc-----------cchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 2344443 3332 235788999999643321 112367889999999999999998765443
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.19 Score=54.52 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=66.0
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|||+|+ .+-+-.+++.|...|.+|.+|||...... + . ....++.++++
T Consensus 113 ~l~gktvGIIG~----------G~IG~~va~~l~a~G~~V~~~Dp~~~~~~------------~---~-~~~~~l~ell~ 166 (381)
T PRK00257 113 DLAERTYGVVGA----------GHVGGRLVRVLRGLGWKVLVCDPPRQEAE------------G---D-GDFVSLERILE 166 (381)
T ss_pred CcCcCEEEEECC----------CHHHHHHHHHHHHCCCEEEEECCcccccc------------c---C-ccccCHHHHHh
Confidence 468999999998 35678899999999999999999532110 0 0 12357888999
Q ss_pred CCCEEEEEeecc------chhhccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWD------EFVTLDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~------~f~~ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|+|+++++.- .+.=+|-+. ...|++..+++.+.+ +.|.+.+
T Consensus 167 ~aDiV~lh~Plt~~g~~~T~~li~~~~-l~~mk~gailIN~aRG~vVde~AL 217 (381)
T PRK00257 167 ECDVISLHTPLTKEGEHPTRHLLDEAF-LASLRPGAWLINASRGAVVDNQAL 217 (381)
T ss_pred hCCEEEEeCcCCCCccccccccCCHHH-HhcCCCCeEEEECCCCcccCHHHH
Confidence 999999998863 223345444 445666556666443 4555443
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=54.33 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=88.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCC-hhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVE-PSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
.+++++|+|+|+ .+.+..++..|...|.+|.++++.-. ....... . ++.. .++.+++
T Consensus 14 ~L~gktIgIIG~----------GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~-------~----G~~~-~s~~eaa 71 (330)
T PRK05479 14 LIKGKKVAIIGY----------GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA-------D----GFEV-LTVAEAA 71 (330)
T ss_pred hhCCCEEEEEee----------HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH-------C----CCee-CCHHHHH
Confidence 357899999998 47889999999999999998765422 1111111 1 2232 3788999
Q ss_pred cCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC--CCCChhhhhhccc----------------------eeeecc
Q psy11160 470 KNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR--KILNHDALLDIGF----------------------NVHTVI 525 (598)
Q Consensus 470 ~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r--~i~d~~~~~~~G~----------------------~y~~v~ 525 (598)
+.+|+|+++++.....++-.+.+...+++..+++=+- |+-........+. ....+-
T Consensus 72 ~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 72 KWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred hcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 9999999999866554432245665565444443222 2211111000010 001111
Q ss_pred chhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCC-CCcCCC
Q psy11160 526 DLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNT-GDTRES 569 (598)
Q Consensus 526 ~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~-~d~R~s 569 (598)
.++...-..-.+.+.+. ...+.+.+.+|+--+||++| .|+=..
T Consensus 152 av~~d~t~~a~~~a~~l-~~aiG~~~~g~~~ttf~~e~~~dl~ge 195 (330)
T PRK05479 152 AVHQDASGNAKDLALAY-AKGIGGTRAGVIETTFKEETETDLFGE 195 (330)
T ss_pred EecCCCCHHHHHHHHHH-HHHcCCCccceeeeeecccccccchhh
Confidence 12221111112222222 24567889999999999998 777655
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.33 Score=54.51 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=50.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.|+|+|..|.+.+..|.. .|++|+++|.+++..+.+.+...
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~---------------------------~G~~v~~~D~~~~~~~~l~~~g~-------- 56 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTR---------------------------FGARPTVCDDDPDALRPHAERGV-------- 56 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHhCCC--------
Confidence 3689999999999999998888 89999999988776655443110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.+.......+.++++|+||.+-+-|.
T Consensus 57 ---------~~~~~~~~~~~l~~~D~VV~SpGi~~ 82 (488)
T PRK03369 57 ---------ATVSTSDAVQQIADYALVVTSPGFRP 82 (488)
T ss_pred ---------EEEcCcchHhHhhcCCEEEECCCCCC
Confidence 11111122345678999998865554
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.11 Score=55.05 Aligned_cols=99 Identities=9% Similarity=0.143 Sum_probs=68.0
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHH-HcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLL-YEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~-~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
+.+++|||+|+ .+-+..+++.|. .-|.+|.+|||....+.... + +.. ..++.++++
T Consensus 143 L~gktvGIiG~----------G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~-~-----------~~~-~~~l~ell~ 199 (323)
T PRK15409 143 VHHKTLGIVGM----------GRIGMALAQRAHFGFNMPILYNARRHHKEAEER-F-----------NAR-YCDLDTLLQ 199 (323)
T ss_pred CCCCEEEEEcc----------cHHHHHHHHHHHhcCCCEEEEECCCCchhhHHh-c-----------CcE-ecCHHHHHH
Confidence 47999999998 367888999997 88999999999764332111 0 112 348899999
Q ss_pred CCCEEEEEeeccch-hh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWDEF-VT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~~f-~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|+|+++.....- ++ ++.+. .+.|++..+++.+-+ +.|.+.+
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~-l~~mk~ga~lIN~aRG~vVde~AL 246 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQ-FAKMKSSAIFINAGRGPVVDENAL 246 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHH-HhcCCCCeEEEECCCccccCHHHH
Confidence 99999998876542 22 45444 446776667776543 4555333
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.079 Score=55.05 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=58.1
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||-|. +|.|+|..|.. .|..|+++...
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~---------------------------~~atVtv~hs~------------------- 192 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLL---------------------------AGCTVTVCHRF------------------- 192 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHH---------------------------CCCeEEEEECC-------------------
Confidence 36899999998 99999999998 78899998642
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++++.+++||+||.+++.|.- +. ...++++.+|++-.+-
T Consensus 193 --------------T~~l~~~~~~ADIvi~avG~p~~--------------v~------~~~vk~gavVIDvGin 233 (285)
T PRK10792 193 --------------TKNLRHHVRNADLLVVAVGKPGF--------------IP------GEWIKPGAIVIDVGIN 233 (285)
T ss_pred --------------CCCHHHHHhhCCEEEEcCCCccc--------------cc------HHHcCCCcEEEEcccc
Confidence 23566778999999999977731 11 2567899999986654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.071 Score=57.71 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=47.7
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCC--CCCCCCChH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNK--LPIYEPGLD 84 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~--~~~~e~~~~ 84 (598)
|.|+|+|+||..++..|++. ..+ +|++.|+|.++++++.+.. ..+.-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~--------------------------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~---- 50 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR--------------------------GPFEEVTVADRNPEKAERLAEKLLGDRVEA---- 50 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT--------------------------TCE-EEEEEESSHHHHHHHHT--TTTTEEE----
T ss_pred CEEEcCcHHHHHHHHHHhcC--------------------------CCCCcEEEEECCHHHHHHHHhhccccceeE----
Confidence 78999999999999999981 235 9999999999999887531 11100
Q ss_pred HHHhhhcCCceEE--ecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFF--STDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~--~~~~~~~~~~adviii~v~tp 118 (598)
..+.. ..++.+.++++|+||-|+|..
T Consensus 51 --------~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 51 --------VQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp --------EE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred --------EEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 00000 012456789999999998643
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.048 Score=59.82 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.+|.|||+|.+|.++|..|.+ .|++|+++|.++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~---------------------------~G~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQ---------------------------KGVYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHH---------------------------CCCEEEEEeCCccc
Confidence 689999999999999999999 89999999987654
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.33 Score=53.65 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=68.1
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH--HHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE--RIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~~~~~~~~~~ 78 (598)
+||..-.|.|||+|-.|.++|..|.+ .|++|+++|..+. ..+.+.+..
T Consensus 2 ~~~~~~~~~v~G~G~sG~s~a~~L~~---------------------------~G~~v~~~D~~~~~~~~~~l~~~~--- 51 (448)
T PRK03803 2 LMQSDGLHIVVGLGKTGLSVVRFLAR---------------------------QGIPFAVMDSREQPPGLDTLAREF--- 51 (448)
T ss_pred ccccCCeEEEEeecHhHHHHHHHHHh---------------------------CCCeEEEEeCCCCchhHHHHHhhc---
Confidence 36777789999999999999999998 8999999997542 112232100
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH----H---HHHHHHHcCCCcE
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA----A---ARMIAEIATDNKI 151 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~----~---~~~i~~~~~~~~i 151 (598)
+| ..+.......+.+.++|+||++-.-|.+ .+.+...++ + .+.+.... +..+
T Consensus 52 --~g----------~~~~~~~~~~~~~~~~d~vV~sp~i~~~--------~p~~~~a~~~~i~i~~~~el~~~~~-~~~~ 110 (448)
T PRK03803 52 --PD----------VELRCGGFDCELLVQASEIIISPGLALD--------TPALRAAAAMGIEVIGDIELFAREA-KAPV 110 (448)
T ss_pred --CC----------cEEEeCCCChHHhcCCCEEEECCCCCCC--------CHHHHHHHHCCCcEEEHHHHHHHhc-CCCE
Confidence 00 0111111122356789998887433321 222222221 0 11223333 5568
Q ss_pred EEEecCCchHHHHHHHHH
Q psy11160 152 VVEKSTVPVRAAESIMNV 169 (598)
Q Consensus 152 vv~~STv~~~~~~~~~~~ 169 (598)
|.+..|---.||-++...
T Consensus 111 I~VTGT~GKTTTt~li~~ 128 (448)
T PRK03803 111 IAITGSNGKSTVTTLVGE 128 (448)
T ss_pred EEEECCCcHHHHHHHHHH
Confidence 888888877766665443
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.26 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.0
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
..+|+|+|+|.||..++..|.+
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~ 23 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAE 23 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHH
Confidence 4699999999999999999876
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.093 Score=54.52 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=56.3
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||-| .||.|+|..|.. .|..|+++...
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~---------------------------~gAtVtv~hs~------------------- 190 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLN---------------------------AGASVSVCHIL------------------- 190 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHH---------------------------CCCEEEEEeCC-------------------
Confidence 3689999999 999999999998 78899988431
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||+||.+++.|-- +. ...+++|.+|++-.+-
T Consensus 191 --------------t~~l~~~~~~ADIvV~AvG~p~~--------------i~------~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 191 --------------TKDLSFYTQNADIVCVGVGKPDL--------------IK------ASMVKKGAVVVDIGIN 231 (285)
T ss_pred --------------cHHHHHHHHhCCEEEEecCCCCc--------------CC------HHHcCCCcEEEEeecc
Confidence 23345678999999999987741 11 2345899999886543
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.087 Score=54.76 Aligned_cols=106 Identities=17% Similarity=0.294 Sum_probs=74.3
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCCh-hhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEP-SQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
.||+++|| ......++..|++.|++|.+||.-... .+.... . +.....++.++++.+|
T Consensus 1 ~kIafIGL----------G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~-------~----Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGL----------GIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA-------A----GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcC----------chhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH-------c----CCcccCCHHHHHHhCC
Confidence 37999998 468899999999999999999986554 222221 1 3367789999999999
Q ss_pred EEEEEeeccch-hhc--cHHHHHhccCCCcEEEecCCCCCh------hhhhhcccee
Q psy11160 474 AIVVCTEWDEF-VTL--DYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNV 521 (598)
Q Consensus 474 alii~t~~~~f-~~l--d~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y 521 (598)
+||.+..-+.= ++. ..+.+.+.+++..+++|...+=.. +.+++.|..|
T Consensus 60 vVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~ 116 (286)
T COG2084 60 VVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF 116 (286)
T ss_pred EEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE
Confidence 99999876642 221 113455566667799999887432 4444566655
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.1 Score=55.01 Aligned_cols=89 Identities=9% Similarity=0.124 Sum_probs=62.1
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+++++|+|+|+ .|....+++.|...|.+|.+||+.....+.... . ++.. .++.++++
T Consensus 13 ~LkgKtVGIIG~----------GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-------~----G~~v-~sl~Eaak 70 (335)
T PRK13403 13 LLQGKTVAVIGY----------GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-------D----GFEV-MSVSEAVR 70 (335)
T ss_pred hhCcCEEEEEeE----------cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH-------c----CCEE-CCHHHHHh
Confidence 458999999998 488999999999999999999653322221111 1 2232 48999999
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcE
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~i 501 (598)
.+|+|+++.+.++-+++=...+...|++..+
T Consensus 71 ~ADVV~llLPd~~t~~V~~~eil~~MK~Gai 101 (335)
T PRK13403 71 TAQVVQMLLPDEQQAHVYKAEVEENLREGQM 101 (335)
T ss_pred cCCEEEEeCCChHHHHHHHHHHHhcCCCCCE
Confidence 9999999998765443312456666765443
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.12 Score=58.56 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=68.4
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||....+.... + ++... ++.++++.
T Consensus 138 l~gktvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~-----------g~~~~-~l~ell~~ 194 (526)
T PRK13581 138 LYGKTLGIIGL----------GRIGSEVAKRAKAFGMKVIAYDPYISPERAAQ-L-----------GVELV-SLDELLAR 194 (526)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEECCCCChhHHHh-c-----------CCEEE-cHHHHHhh
Confidence 47899999998 36788999999999999999999765432211 1 22333 78899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
+|+|+++.+... -++ ++- ...+.|++..++++..+ +.|.+.
T Consensus 195 aDiV~l~lP~t~~t~~li~~-~~l~~mk~ga~lIN~aRG~~vde~a 239 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGA-EELAKMKPGVRIINCARGGIIDEAA 239 (526)
T ss_pred CCEEEEccCCChHhhcCcCH-HHHhcCCCCeEEEECCCCceeCHHH
Confidence 999999988753 333 343 34556776667776554 445433
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.11 Score=54.79 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=60.7
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ .+-+-.+++.|..-|.+|.+|||...... . .+. ..++.++++.
T Consensus 143 L~gktvGIiG~----------G~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------------~-~~~-~~~l~ell~~ 196 (311)
T PRK08410 143 IKGKKWGIIGL----------GTIGKRVAKIAQAFGAKVVYYSTSGKNKN--------------E-EYE-RVSLEELLKT 196 (311)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHhhcCCEEEEECCCccccc--------------c-Cce-eecHHHHhhc
Confidence 57999999998 36788999999999999999999643210 0 112 3478999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEec
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDG 505 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~ 505 (598)
+|+|+++.+... -++ +|-+.+ +.|++..+++.+
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~-~~Mk~~a~lIN~ 231 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKEL-KLLKDGAILINV 231 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHH-HhCCCCeEEEEC
Confidence 999999987543 222 344443 356655555543
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.096 Score=56.00 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=44.3
Q ss_pred ceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.||+|||+|.++.. .+..+.. ...+.+|+ ++|+++++.+...+-
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~-------------------------~~~~~~l~av~d~~~~~~~~~~~~--------- 47 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLN-------------------------RKDSWHVAHIFRRHAKPEEQAPIY--------- 47 (344)
T ss_pred eEEEEECCCHHHhheehhhHhc-------------------------CCCCEEEEEEEcCChhHHHHHHhc---------
Confidence 58999999997642 2333322 00356765 589987654222210
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
....+.+|+++.++ +.|+|+||+|+..
T Consensus 48 ---------~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 48 ---------SHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred ---------CCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 11345678888885 5799999987654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.18 Score=52.77 Aligned_cols=106 Identities=10% Similarity=0.190 Sum_probs=69.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+.||+|..|.+....++. ..++-.++++|+|++.++..++-... .+++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~-------------------------~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~ 176 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKH-------------------------HLPTTSFHNFDIDPSANDVARRLVSS--DPDLS 176 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHh-------------------------cCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc
Confidence 3689999999999887666655 11455899999999999876642100 12221
Q ss_pred HHHhhhcCCceEEe-cCHHH---HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFS-TDIKS---AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~---~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.+++|. .|..+ ...+.|+||+.+--.+++ ..=..+++.+.+.+++|.+++..|
T Consensus 177 --------~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk-----------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 177 --------KRMFFHTADVMDVTESLKEYDVVFLAALVGMDK-----------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred --------CCcEEEECchhhcccccCCcCEEEEeccccccc-----------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 233333 23222 135789999985322211 123678899999999999999888
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.13 Score=55.28 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=69.8
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhh-hh-cccccccCCCceEecCChhhhc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQD-LK-ELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~al 469 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||....+..... ++ +........ . ....++.+++
T Consensus 157 l~gktvGIiG~----------G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~L~ell 224 (347)
T PLN02928 157 LFGKTVFILGY----------GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE-K-GGHEDIYEFA 224 (347)
T ss_pred CCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccc-c-CcccCHHHHH
Confidence 57999999998 467889999999999999999996443211100 00 000000000 0 1235788999
Q ss_pred cCCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 470 KNTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 470 ~~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+.+|+|+++..... -++ ++- ...+.|++..++++.-+ ++|.+.+
T Consensus 225 ~~aDiVvl~lPlt~~T~~li~~-~~l~~Mk~ga~lINvaRG~lVde~AL 272 (347)
T PLN02928 225 GEADIVVLCCTLTKETAGIVND-EFLSSMKKGALLVNIARGGLLDYDAV 272 (347)
T ss_pred hhCCEEEECCCCChHhhcccCH-HHHhcCCCCeEEEECCCccccCHHHH
Confidence 99999999987532 233 343 44556877778888643 5665444
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.41 Score=53.40 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|.|||+|..|..+|..|++ .|++|+++|.++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~---------------------------~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE---------------------------LGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCc
Confidence 3589999999999999999998 899999999654
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.14 Score=54.59 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=26.6
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHh-CCCCcceecc
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALK-CPNIQVTVVD 37 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~-~~~~~~~~~~ 37 (598)
..+||+|||+ ||+|.-+...|+.+ +|.+++..+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~la 38 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALA 38 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEE
Confidence 4579999998 99999999999874 5666554443
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.17 Score=48.24 Aligned_cols=76 Identities=16% Similarity=0.333 Sum_probs=51.8
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++++|||-+ .+|.|++..|.+ .|..|+..+..
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~---------------------------~~atVt~~h~~------------------- 69 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLN---------------------------KGATVTICHSK------------------- 69 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHH---------------------------TT-EEEEE-TT-------------------
T ss_pred CCEEEEECCcCCCChHHHHHHHh---------------------------CCCeEEeccCC-------------------
Confidence 3689999998 599999999999 78889888752
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
|.++++.+++||+||.+++.|-. +. ...++++.+|++.++...
T Consensus 70 --------------T~~l~~~~~~ADIVVsa~G~~~~--------------i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 70 --------------TKNLQEITRRADIVVSAVGKPNL--------------IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp --------------SSSHHHHHTTSSEEEE-SSSTT---------------B-------GGGS-TTEEEEE--CEEE
T ss_pred --------------CCcccceeeeccEEeeeeccccc--------------cc------cccccCCcEEEecCCccc
Confidence 24556678999999999987631 11 235689999998777654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.4 Score=53.25 Aligned_cols=111 Identities=12% Similarity=0.176 Sum_probs=66.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-----HHHHHHc-CCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-----RIRQWNS-NKLPIY 79 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-----~~~~~~~-~~~~~~ 79 (598)
+||.|+|+|..|.++|..|.. .|++|+++|.++. ..+.+.+ |.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~---------------------------~G~~V~~~D~~~~~~~~~~~~~l~~~gi---- 63 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVK---------------------------LGAKVTAFDKKSEEELGEVSNELKELGV---- 63 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHH---------------------------CCCEEEEECCCCCccchHHHHHHHhCCC----
Confidence 689999999999999999999 8999999998642 1122322 11
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHH-------HHHHHHHcCCCcEE
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAA-------ARMIAEIATDNKIV 152 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~iv 152 (598)
.+....+..+.+.++|+||++..-|.+ .+.+...++. ++.+.+. .+.++|
T Consensus 64 --------------~~~~~~~~~~~~~~~dlVV~Spgi~~~--------~p~~~~a~~~~i~i~s~~e~~~~~-~~~~vI 120 (458)
T PRK01710 64 --------------KLVLGENYLDKLDGFDVIFKTPSMRID--------SPELVKAKEEGAYITSEMEEFIKY-CPAKVF 120 (458)
T ss_pred --------------EEEeCCCChHHhccCCEEEECCCCCCC--------chHHHHHHHcCCcEEechHHhhhh-cCCCEE
Confidence 111122223456789999888433321 1222211110 0111222 234688
Q ss_pred EEecCCchHHHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMNVL 170 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~l 170 (598)
-+..|.--.||.++...+
T Consensus 121 aITGTnGKTTT~~ll~~i 138 (458)
T PRK01710 121 GVTGSDGKTTTTTLIYEM 138 (458)
T ss_pred EEECCCCHHHHHHHHHHH
Confidence 888888887777765533
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.23 Score=49.15 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=29.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.++|.|||.|.||...+..|.+ .|.+|++++.+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~---------------------------~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK---------------------------YGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEcCC
Confidence 3689999999999999999999 78999999765
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.043 Score=59.69 Aligned_cols=33 Identities=45% Similarity=0.589 Sum_probs=30.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+|+|||.|.+|+++|..|++ .|++|+++|+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~---------------------------~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ---------------------------RGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeCCC
Confidence 599999999999999999999 899999999864
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.18 Score=42.60 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.5
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++++|+|.|.+|.+++..+..
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~ 44 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLAD 44 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 4689999999999999999998
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.16 Score=48.23 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=31.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.+|.|||.|.+|...+..|.+ .|++|++++ ++..+.+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~---------------------------~ga~V~VIs--p~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKD---------------------------TGAFVTVVS--PEICKEMK 51 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEc--CccCHHHH
Confidence 689999999999999999999 899999995 44444443
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.34 Score=47.79 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=32.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~ 72 (598)
.||.|||+|-+|+.+|..|+. .|. +++++|.+.-....++
T Consensus 22 ~~VlviG~GglGs~ia~~La~---------------------------~Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAG---------------------------AGVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHH---------------------------cCCCeEEEecCCEEcccchh
Confidence 689999999999999999999 675 8999998744444444
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.18 Score=53.71 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=49.4
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH-----HHHcCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR-----QWNSNKLP 77 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-----~~~~~~~~ 77 (598)
++++|.|.|. |++|..++..|.+ +|++|++++++.+... .+..+...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~---------------------------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~ 61 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLE---------------------------RGYTVKGTVRNPDDPKNTHLRELEGGKER 61 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---------------------------CcCEEEEEeCCchhhhHHHHHHhhCCCCc
Confidence 4578999998 9999999999999 8999999999866432 11111000
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
+. .....++-..+..++++.+|+||-+..
T Consensus 62 ~~----------~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 62 LI----------LCKADLQDYEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred EE----------EEecCcCChHHHHHHHhcCCEEEEecC
Confidence 00 000112222345567888999988864
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.061 Score=44.59 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=30.2
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
||.|||.|++|.-+|..|+. .|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~---------------------------~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE---------------------------LGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH---------------------------TTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------hCcEEEEEeccch
Confidence 68999999999999999999 8899999998643
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.084 Score=54.49 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=32.3
Q ss_pred eEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH
Q psy11160 7 HICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ 70 (598)
Q Consensus 7 ~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~ 70 (598)
+|.|.| .|++|..++..|.. +||+|.++|++......
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLA---------------------------AGHDVRGLDRLRDGLDP 39 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHh---------------------------CCCeEEEEeCCCccccc
Confidence 589999 59999999999999 89999999997666543
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.23 Score=52.00 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=59.7
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++.+++|+|+|.+ +.-..+++..|.++|++|.+++-.. .++.++++
T Consensus 156 ~l~Gk~V~vIG~s---------~ivG~PmA~~L~~~gatVtv~~~~t-------------------------~~l~e~~~ 201 (301)
T PRK14194 156 DLTGKHAVVIGRS---------NIVGKPMAALLLQAHCSVTVVHSRS-------------------------TDAKALCR 201 (301)
T ss_pred CCCCCEEEEECCC---------CccHHHHHHHHHHCCCEEEEECCCC-------------------------CCHHHHHh
Confidence 4689999999952 3577899999999999999987531 35778889
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r 506 (598)
.||++|.++..+.+-.-+| +++..+++|..
T Consensus 202 ~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 202 QADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred cCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 9999999999998755443 33445899976
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.096 Score=56.54 Aligned_cols=80 Identities=19% Similarity=0.352 Sum_probs=49.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.|||.|.|. |++|..++..|.+ . |++|+++|++.++...+.....+...++
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~---------------------------~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~ 66 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMT---------------------------ETPHKVLALDVYNDKIKHLLEPDTVPWSGR 66 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHh---------------------------cCCCEEEEEecCchhhhhhhccccccCCCC
Confidence 478999995 9999999999998 5 6999999998877665442110000011
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
++ . ....++-..+..++++++|+||-+..
T Consensus 67 ~~-~----~~~Dl~d~~~l~~~~~~~d~ViHlAa 95 (386)
T PLN02427 67 IQ-F----HRINIKHDSRLEGLIKMADLTINLAA 95 (386)
T ss_pred eE-E----EEcCCCChHHHHHHhhcCCEEEEccc
Confidence 00 0 00111111234556778999887763
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.091 Score=50.66 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=32.1
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
||+|||+|-+|+.+|..|+. .|. +++++|.+.-....+++
T Consensus 1 ~VlViG~GglGs~ia~~La~---------------------------~Gvg~i~lvD~D~v~~sNl~R 41 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR---------------------------SGVGNLKLVDFDVVEPSNLNR 41 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCEEcCcchhc
Confidence 68999999999999999999 676 69999988633344443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.13 Score=54.35 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~ 26 (598)
++||+|+|+ ||.|.-+...|+.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~ 24 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAG 24 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhc
Confidence 579999997 9999999999998
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.28 Score=52.53 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=62.0
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc-CCCC-CCCCCh
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS-NKLP-IYEPGL 83 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~-~~~~-~~e~~~ 83 (598)
++.|+|+|.+|+-.+..+.. .| .+|+++|++++|++..++ +... +..+.-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~---------------------------~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~ 223 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKL---------------------------LGASVVIVVDRSPERLELAKEAGGADVVVNPSE 223 (350)
T ss_pred EEEEECCCHHHHHHHHHHHH---------------------------cCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc
Confidence 79999999999998666655 45 689999999999999876 3221 111100
Q ss_pred HHHHhhhcCCceEEecCHHHHh--ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAI--QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.... ...+.. ..+|++|.|++.+ .++++..+.++++-.|+.-++....
T Consensus 224 ~~~~~-----------~~~~~t~g~g~D~vie~~G~~------------------~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 224 DDAGA-----------EILELTGGRGADVVIEAVGSP------------------PALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ccHHH-----------HHHHHhCCCCCCEEEECCCCH------------------HHHHHHHHHhcCCCEEEEEeccCCc
Confidence 00000 000111 3599999998743 2455566667777666665655443
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.51 Score=52.42 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=65.7
Q ss_pred CceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~~~~~~~~e~~ 82 (598)
.++|.|||+|-.|.+ +|..|.+ .|++|+++|.+.. ..+.+.+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~---------------------------~G~~V~~~D~~~~~~~~~l~~~-------- 51 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLN---------------------------LGYKVSGSDLKESAVTQRLLEL-------- 51 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHh---------------------------CCCeEEEECCCCChHHHHHHHC--------
Confidence 468999999999999 7999998 8999999997643 22223221
Q ss_pred hHHHHhhhcCCceEEe-cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEE
Q psy11160 83 LDEVVKKTRDVNLFFS-TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVE 154 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~ 154 (598)
++.+. ....+.+.++|+||++-.-|.+ .+.+...++ -.+.+....+..++|.+
T Consensus 52 -----------gi~~~~~~~~~~~~~~d~vv~spgi~~~--------~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~I 112 (461)
T PRK00421 52 -----------GAIIFIGHDAENIKDADVVVYSSAIPDD--------NPELVAARELGIPVVRRAEMLAELMRFRTSIAV 112 (461)
T ss_pred -----------CCEEeCCCCHHHCCCCCEEEECCCCCCC--------CHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEE
Confidence 11221 1122356789998888544432 122221111 11122333344578888
Q ss_pred ecCCchHHHHHHHH
Q psy11160 155 KSTVPVRAAESIMN 168 (598)
Q Consensus 155 ~STv~~~~~~~~~~ 168 (598)
..|---.||-.+..
T Consensus 113 TGTnGKTTTt~ll~ 126 (461)
T PRK00421 113 AGTHGKTTTTSLLA 126 (461)
T ss_pred ECCCCHHHHHHHHH
Confidence 88877766655544
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.69 Score=50.96 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=32.7
Q ss_pred CCCC-CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQT-ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~-~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
||.. ..+|.|+|+|..|.+.+..|++ .|++|+++|...
T Consensus 1 ~~~~~~~~i~v~G~G~sG~s~~~~l~~---------------------------~G~~v~~~D~~~ 39 (438)
T PRK03806 1 MADYQGKKVVIIGLGLTGLSCVDFFLA---------------------------RGVTPRVIDTRI 39 (438)
T ss_pred CcccCCCEEEEEeeCHHHHHHHHHHHH---------------------------CCCeEEEEcCCC
Confidence 6664 3579999999999999998888 899999999753
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.18 Score=53.02 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=66.3
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-...+++.|...|.+|.+|||....+ +.. ....++.++++.
T Consensus 120 L~gktvgIiG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~---~~~~~l~ell~~ 173 (303)
T PRK06436 120 LYNKSLGILGY----------GGIGRRVALLAKAFGMNIYAYTRSYVND-------------GIS---SIYMEPEDIMKK 173 (303)
T ss_pred CCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCCCccc-------------Ccc---cccCCHHHHHhh
Confidence 57999999998 3678889999998999999999964321 101 123578899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
+|+|+++.+... -++ ++- ...+.|++..++++..+ +.|.+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~-~~l~~mk~ga~lIN~sRG~~vd~~a 218 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINS-KMLSLFRKGLAIINVARADVVDKND 218 (303)
T ss_pred CCEEEECCCCCchhhcCcCH-HHHhcCCCCeEEEECCCccccCHHH
Confidence 999999887643 222 343 34456777667777654 445433
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.19 Score=55.08 Aligned_cols=94 Identities=11% Similarity=0.142 Sum_probs=66.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ .+-+..+++.|...|.+|.+|||..... .+ .+....++.++++.
T Consensus 149 L~gktvGIiG~----------G~IG~~vA~~~~~fGm~V~~~d~~~~~~------------~~---~~~~~~~l~ell~~ 203 (409)
T PRK11790 149 VRGKTLGIVGY----------GHIGTQLSVLAESLGMRVYFYDIEDKLP------------LG---NARQVGSLEELLAQ 203 (409)
T ss_pred CCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEECCCcccc------------cC---CceecCCHHHHHhh
Confidence 57999999998 3678899999999999999999953210 00 12445689999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCCh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNH 511 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~ 511 (598)
+|+|+++.+... -++ ++-+. .+.|++..+++.+.+ +.|.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~-l~~mk~ga~lIN~aRG~~vde 246 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEE-LALMKPGAILINASRGTVVDI 246 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHH-HhcCCCCeEEEECCCCcccCH
Confidence 999999987643 333 34444 446776667776643 4454
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.84 Score=49.11 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=68.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.+||+| .|..+...+.. ...-+|+++|+|++.++..++- + .+.
T Consensus 151 PkrVLIIGgG-dG~tlrelLk~--------------------------~~v~~It~VEIDpeVIelAr~~--~----~L~ 197 (374)
T PRK01581 151 PKRVLILGGG-DGLALREVLKY--------------------------ETVLHVDLVDLDGSMINMARNV--P----ELV 197 (374)
T ss_pred CCEEEEECCC-HHHHHHHHHhc--------------------------CCCCeEEEEeCCHHHHHHHHhc--c----ccc
Confidence 3689999998 44444444443 0236899999999999877641 0 000
Q ss_pred HHHhhh-cCCceEE-ecCHHHHh----ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKT-RDVNLFF-STDIKSAI----QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~-~~~~~~~-~~~~~~~~----~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
++-... .+.+++. ..|..+-+ ..-|+||+..+.|... ...--+-.+.++.+.+.++++-+++.-+..
T Consensus 198 ~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 198 SLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred hhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 000000 0123332 23433333 2359999998766431 112224467788899999999988877665
Q ss_pred ch
Q psy11160 159 PV 160 (598)
Q Consensus 159 ~~ 160 (598)
+.
T Consensus 271 p~ 272 (374)
T PRK01581 271 PA 272 (374)
T ss_pred hh
Confidence 53
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.058 Score=58.61 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=31.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+|+|||.|.+|+++|..|++ .|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~---------------------------~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQ---------------------------AGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCCc
Confidence 589999999999999999999 8999999999753
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.14 Score=53.54 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=34.6
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI 68 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~ 68 (598)
|....++|.|.|. |++|..++..|+. .|++|++.+++.+..
T Consensus 1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~---------------------------~G~~V~~~~r~~~~~ 42 (325)
T PLN02989 1 MADGGKVVCVTGASGYIASWIVKLLLF---------------------------RGYTINATVRDPKDR 42 (325)
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHH---------------------------CCCEEEEEEcCCcch
Confidence 5556688999985 9999999999999 899999988876543
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.18 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~ 26 (598)
|+ +++||+|+|+ ||+|..+...|.+
T Consensus 1 m~-~~~~IaIvGATG~vG~eLlrlL~~ 26 (336)
T PRK05671 1 MS-QPLDIAVVGATGTVGEALVQILEE 26 (336)
T ss_pred CC-CCCEEEEEccCCHHHHHHHHHHhh
Confidence 44 4579999997 9999999999996
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.43 Score=48.21 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=35.5
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
+++|.|+|+ |.+|..++..|.. .|++|+++.+++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA---------------------------KGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh---------------------------CCCEEEEEecCHHHHHHh
Confidence 578999995 9999999999999 899999999998876554
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.16 Score=52.91 Aligned_cols=75 Identities=19% Similarity=0.370 Sum_probs=55.5
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||.|. +|.|+|..|.. .|..|+++++..
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~---------------------------~gatVtv~~~~t------------------ 193 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLN---------------------------ANATVTICHSRT------------------ 193 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh---------------------------CCCEEEEEeCCc------------------
Confidence 36899999997 99999999998 677999998621
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.++.+.+++||+||.+++.|. .+. .+.++++.+|++-.+-+
T Consensus 194 ---------------~~L~~~~~~aDIvI~AtG~~~--------------~v~------~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 194 ---------------QNLPELVKQADIIVGAVGKPE--------------LIK------KDWIKQGAVVVDAGFHP 234 (283)
T ss_pred ---------------hhHHHHhccCCEEEEccCCCC--------------cCC------HHHcCCCCEEEEEEEee
Confidence 123445689999999986542 011 13468999998876655
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.2 Score=52.12 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=57.3
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++++|||-+. ||.|+|..|.. .|..|++++..
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~---------------------------~~atVtv~hs~------------------- 197 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLN---------------------------RNATVSVCHVF------------------- 197 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHH---------------------------CCCEEEEEecc-------------------
Confidence 36899999998 99999999998 78899988731
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||+||.+++-|.. +. ...++++.+|++-.+-
T Consensus 198 --------------T~~l~~~~~~ADIvv~AvG~p~~--------------i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 198 --------------TDDLKKYTLDADILVVATGVKHL--------------IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred --------------CCCHHHHHhhCCEEEEccCCccc--------------cC------HHHcCCCcEEEEeccc
Confidence 33566778999999999987731 11 1257899999986653
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.15 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~ 26 (598)
++||+|+|+ ||+|..+...|+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~ 23 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEE 23 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh
Confidence 368999997 9999999999988
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.056 Score=58.31 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=33.0
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+ +.++|+|||.|..|+.+|..|++ .|++|+++|++++
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~---------------------------~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALAR---------------------------QGIKVKLLEQAAE 38 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHh---------------------------CCCcEEEEeeCcc
Confidence 44 45799999999999999999999 7899999998753
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.14 Score=53.34 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=48.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCC
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~ 82 (598)
.++|.|.| +|++|..++..|.+ .|++|++++++.+........ ...-..+.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~ 56 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQ---------------------------RGYTVKATVRDPNDPKKTEHLLALDGAKER 56 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHH---------------------------CCCEEEEEEcCCCchhhHHHHHhccCCCCc
Confidence 46899999 59999999999999 899999999876543221100 00000000
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
+. .....+.-......+++++|+||-+..
T Consensus 57 ~~-----~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 57 LH-----LFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred eE-----EEeccccCcchHHHHHcCCCEEEEeCC
Confidence 00 000112222345567888999988864
|
|
| >KOG1494|consensus | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.17 Score=51.85 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
...||+|+|+ |-+|.|+...|.. +|-+ -+..+||+.... -...-.++|..+.
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~-np~V------------------------s~LaLYDi~~~~--GVaaDlSHI~T~s 79 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKL-NPLV------------------------SELALYDIANTP--GVAADLSHINTNS 79 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhc-Cccc------------------------ceeeeeecccCC--cccccccccCCCC
Confidence 3469999997 8999999988876 2222 367778875211 0000111111100
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
- + .+..-...+++++++||+|+|+.+-|.++...+.+ -..+-..++.....|++..+.-.+.+++
T Consensus 80 ~-------V-~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 80 S-------V-VGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred c-------e-eccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 0 0 11122245778999999999999999888664333 2345567777778888888777776664
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.071 Score=55.47 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=47.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+|.|.|. |++|..++..|++ .|++|++++++++....+.......
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~------ 47 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLE---------------------------QGEEVRVLVRPTSDRRNLEGLDVEI------ 47 (328)
T ss_pred CeEEEECCccchhHHHHHHHHH---------------------------CCCEEEEEEecCccccccccCCceE------
Confidence 47999985 9999999999999 8999999999876543322110000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
....+.-..++.++++.+|+||-+..
T Consensus 48 ------~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 48 ------VEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred ------EEeeCCCHHHHHHHHhCCCEEEEece
Confidence 00111111234556778999888764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.21 Score=53.26 Aligned_cols=91 Identities=14% Similarity=0.257 Sum_probs=64.9
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHH-HHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTL-LYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L-~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
+.+++|+|+|+ .+-+..+++.| ...|.+|..|||..... ... .+....++.++++
T Consensus 144 l~g~~VgIIG~----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~-~~~-------------~~~~~~~l~ell~ 199 (332)
T PRK08605 144 IKDLKVAVIGT----------GRIGLAVAKIFAKGYGSDVVAYDPFPNAK-AAT-------------YVDYKDTIEEAVE 199 (332)
T ss_pred eCCCEEEEECC----------CHHHHHHHHHHHhcCCCEEEEECCCccHh-HHh-------------hccccCCHHHHHH
Confidence 47899999998 36677899998 55799999999975432 111 1234568899999
Q ss_pred CCCEEEEEeeccchhh--ccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWDEFVT--LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~~f~~--ld~~~l~~~m~~~~iI~D~r~ 507 (598)
++|+|++++....... ++ ..+.+.|++..++++...
T Consensus 200 ~aDvIvl~lP~t~~t~~li~-~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFN-ADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred hCCEEEEeCCCCcchhhhcC-HHHHhcCCCCcEEEECCC
Confidence 9999999987655332 22 234566777778888664
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.78 Score=50.65 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=67.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~~~~~~~~~e~~ 82 (598)
.++|.|+|.|..|.+.|..|++ .|++|+++|.++.. .+++.+-
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~---------------------------~g~~v~~~d~~~~~~~~~~l~~~-------- 49 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRK---------------------------NGAEVAAYDAELKPERVAQIGKM-------- 49 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCCCchhHHHHhhc--------
Confidence 4689999999999999999999 89999999976542 2222210
Q ss_pred hHHHHhhhcCCceEE--ecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcC--CCcE
Q psy11160 83 LDEVVKKTRDVNLFF--STDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIAT--DNKI 151 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~--~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~--~~~i 151 (598)
..++.+ .........++|+||.+..-|.+ .+.+...++ -.+-+...++ +..+
T Consensus 50 ---------~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~--------~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~ 112 (445)
T PRK04308 50 ---------FDGLVFYTGRLKDALDNGFDILALSPGISER--------QPDIEAFKQNGGRVLGDIELLADIVNRRGDKV 112 (445)
T ss_pred ---------cCCcEEEeCCCCHHHHhCCCEEEECCCCCCC--------CHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCE
Confidence 001222 11122234689999998655532 233332221 0122234333 3468
Q ss_pred EEEecCCchHHHHHHHHHH
Q psy11160 152 VVEKSTVPVRAAESIMNVL 170 (598)
Q Consensus 152 vv~~STv~~~~~~~~~~~l 170 (598)
|.+..|.--.||..+...+
T Consensus 113 I~ITGT~GKTTTt~li~~i 131 (445)
T PRK04308 113 IAITGSNGKTTVTSLVGYL 131 (445)
T ss_pred EEEECCCcHHHHHHHHHHH
Confidence 8888887776666655433
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.51 Score=52.26 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.5
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
||.|||+|..|.+.|..|++ .|++|+++|+++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~---------------------------~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA---------------------------QGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEECCCC
Confidence 79999999999999999998 899999999864
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.19 Score=55.38 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=47.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+++|+|.||..++..|.++-+ .+..++ +...+| .++|++.++.+.+. .
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~-----~l~~~~------------g~~i~l~~V~~~~~~~~~~~~-----~----- 55 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAE-----EIAARA------------GRPIEIKKVAVRDLEKDRGVD-----L----- 55 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHH-----HHHHhc------------CCCEEEEEEEeCChhhccCCC-----C-----
Confidence 4799999999999999988866100 000110 013454 45688876643110 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNT 117 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~t 117 (598)
....+++|+++.+. +.|+|+.++++
T Consensus 56 ---------~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 56 ---------PGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred ---------cccceeCCHHHHhhCCCCCEEEECCCC
Confidence 12345678888775 46999999754
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.3 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.0
Q ss_pred CceEEEEC-CChhHHHHHHHHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~ 26 (598)
++||+|+| .|++|..+...|..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~ 25 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLAN 25 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHc
Confidence 47999998 79999999999887
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.15 Score=43.98 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+..+++|+|+|..|..++..+.+. .|+. +.++|.+++++-+--
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~--------------------------~g~~i~~~~dv~~~~~G~~i---------- 45 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSM--------------------------RGFGIVAVFDVDPEKIGKEI---------- 45 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHH--------------------------HCECEEEEEEECTTTTTSEE----------
T ss_pred CCCeEEEECCCCcHHHHHHhHHHH--------------------------cCCCCEEEEEcCCCccCcEE----------
Confidence 346899999999999998655541 4554 567899887653211
Q ss_pred hHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp 118 (598)
.++....+.+++.+. .|+.+++||.+
T Consensus 46 ----------~gipV~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 46 ----------GGIPVYGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp ----------TTEEEESSHHHHHHHCTTSEEEEES-HH
T ss_pred ----------CCEEeeccHHHhhhhhCCCEEEEEcCHH
Confidence 134444455555555 99999999653
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.059 Score=58.05 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=32.8
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|+.+..+|.|||+|.+|+.+|..|++ .|++|+++|+++
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~---------------------------~G~~v~liE~~~ 40 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALAR---------------------------AGASVALVAPEP 40 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhc---------------------------CCCeEEEEeCCC
Confidence 55455689999999999999999999 789999999864
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.82 Score=50.39 Aligned_cols=115 Identities=9% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH----HHHHHcCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER----IRQWNSNKLPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~----~~~~~~~~~~~~ 79 (598)
..++|.|+|+|.+|.++|..|++ .|++|+++|.+... .+.+....
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~l~~~g---- 52 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHK---------------------------LGANVTVNDGKPFSENPEAQELLEEG---- 52 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEEcCCCccchhHHHHHHhcC----
Confidence 34689999999999999999999 89999999986422 22232210
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhcc-CcEEEEecCCCCCCCCCCCCCCcchHHHHHH----H--HHHHHHcCCCcEE
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQK-AQLIFISVNTPTKTFGNGKGRAADLKYVEAA----A--RMIAEIATDNKIV 152 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~-adviii~v~tp~~~~~~~~~~~~~~~~~~~~----~--~~i~~~~~~~~iv 152 (598)
.......+..+.+.. +|+||.+..-|.+ .+.+...++. + -+++..+.+..+|
T Consensus 53 -------------~~~~~~~~~~~~~~~~~d~vV~s~gi~~~--------~~~~~~a~~~~i~v~~~~el~~~~~~~~~I 111 (447)
T PRK02472 53 -------------IKVICGSHPLELLDEDFDLMVKNPGIPYT--------NPMVEKALEKGIPIITEVELAYLISEAPII 111 (447)
T ss_pred -------------CEEEeCCCCHHHhcCcCCEEEECCCCCCC--------CHHHHHHHHCCCcEEeHHHHHHHhcCCCEE
Confidence 111111233333444 8988887543322 1222221110 0 1122233455688
Q ss_pred EEecCCchHHHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMNVL 170 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~l 170 (598)
.+..|.--.||.++...+
T Consensus 112 ~VTGT~GKTTTt~ll~~i 129 (447)
T PRK02472 112 GITGSNGKTTTTTLIGEM 129 (447)
T ss_pred EEeCCCchHHHHHHHHHH
Confidence 888888776766655543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.17 Score=50.43 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=32.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
.+|+|||+|-+|+.+|..|+. .|. +++++|.+.-....+++
T Consensus 29 ~~V~ViG~GglGs~ia~~La~---------------------------~Gvg~i~lvD~D~ve~sNL~R 70 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALAR---------------------------SGVGNLKLVDFDVVEPSNLNR 70 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCEeccccccc
Confidence 689999999999999999999 665 69999987433334443
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.078 Score=52.71 Aligned_cols=71 Identities=13% Similarity=0.312 Sum_probs=45.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.+|..++..+.. ...|+++++ +|.++++......+ .+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~-------------------------~~~g~~ivgv~D~d~~~~~~~i~g-~~------ 131 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGF-------------------------EKRGFKIVAAFDVDPEKIGTKIGG-IP------ 131 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhc-------------------------ccCCcEEEEEEECChhhcCCEeCC-eE------
Confidence 4589999999999998876432 115777775 78887765322111 11
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
.....++.+.++ ++|.+++|+|..
T Consensus 132 -----------v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 132 -----------VYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred -----------EcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 111234455554 499999998653
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.21 Score=51.79 Aligned_cols=73 Identities=23% Similarity=0.549 Sum_probs=55.6
Q ss_pred ceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||-+ .||.|+|..|.. .|..|++...
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~---------------------------~~AtVti~hs--------------------- 189 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLN---------------------------ANATVDICHI--------------------- 189 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Confidence 689999998 999999999998 6778886642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.|.++.+.+++||+||.+++.|.- +. ...+++|.+|++-++-
T Consensus 190 ------------~T~~l~~~~~~ADIvV~AvGkp~~--------------i~------~~~vk~gavvIDvGin 231 (281)
T PRK14183 190 ------------FTKDLKAHTKKADIVIVGVGKPNL--------------IT------EDMVKEGAIVIDIGIN 231 (281)
T ss_pred ------------CCcCHHHHHhhCCEEEEecCcccc--------------cC------HHHcCCCcEEEEeecc
Confidence 123456678999999999987741 11 2456799999986554
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.2 Score=53.04 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=63.3
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+-.+++.|..-|.+|.+|||...... .-..++.++++.
T Consensus 146 l~gktvgIiG~----------G~IG~~vA~~l~~fgm~V~~~~~~~~~~~------------------~~~~~l~ell~~ 197 (317)
T PRK06487 146 LEGKTLGLLGH----------GELGGAVARLAEAFGMRVLIGQLPGRPAR------------------PDRLPLDELLPQ 197 (317)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCCccc------------------ccccCHHHHHHh
Confidence 47999999998 46788999999999999999998632110 012478899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCCh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNH 511 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~ 511 (598)
+|+|+++.+... -++ ++-+.+ +.|++..+++.+-+ +.|.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~-~~mk~ga~lIN~aRG~vVde 240 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGAREL-ALMKPGALLINTARGGLVDE 240 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHH-hcCCCCeEEEECCCccccCH
Confidence 999999887543 233 354444 35665556665443 4454
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.54 Score=46.80 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=50.1
Q ss_pred EEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCCCCChH
Q psy11160 8 ICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 8 I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~e~~~~ 84 (598)
|+|+|+ |.+|.+++..|.+ .+++|.+.-|++ +..+.+......+.+-.
T Consensus 1 I~V~GatG~~G~~v~~~L~~---------------------------~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d-- 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---------------------------AGFSVRALVRDPSSDRAQQLQALGAEVVEAD-- 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---------------------------TTGCEEEEESSSHHHHHHHHHHTTTEEEES---
T ss_pred CEEECCccHHHHHHHHHHHh---------------------------CCCCcEEEEeccchhhhhhhhcccceEeecc--
Confidence 789997 9999999999999 899999999985 34556653211111111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+.-..++.++++++|.||++++..
T Consensus 52 ----------~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 52 ----------YDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp ----------TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred ----------cCCHHHHHHHHcCCceEEeecCcc
Confidence 111234566899999999998644
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.52 Score=52.69 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=33.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR 69 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~ 69 (598)
.++|.|+|+|-.|.++|..|.+ .|++|+++|++.....
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~---------------------------~G~~V~~~D~~~~~~~ 52 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSE---------------------------LGCDVVVADDNETARH 52 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEECCChHHHH
Confidence 3689999999999999999999 8999999998766544
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.18 Score=52.52 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=51.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++.|||+|-+|.+++..|++ .|. +|++++|+.++.+.+.+.....
T Consensus 126 k~vlvlGaGGaarai~~aL~~---------------------------~G~~~i~I~nRt~~ka~~La~~~~~~------ 172 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALAS---------------------------LGVTDITVINRNPDKLSRLVDLGVQV------ 172 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHH---------------------------cCCCeEEEEeCCHHHHHHHHHHhhhc------
Confidence 579999999999999999998 675 7999999999998876421000
Q ss_pred HHHhhhcCCceE-Ee--cCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLF-FS--TDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~-~~--~~~~~~~~~adviii~v~tp 118 (598)
..+. .. .+..+.+.++|+||-|+|..
T Consensus 173 --------~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 173 --------GVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred --------CcceeccchhhhhhcccCCCEEEECCCCC
Confidence 0011 11 12234567899999997653
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.68 Score=51.35 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=32.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
++|.|||+|-.|.+.|..|.+ .|++|+++|........+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~---------------------------~G~~v~~~D~~~~~~~~l 48 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVA---------------------------GGAEVIAWDDNPASRAKA 48 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHH---------------------------CCCEEEEECCChhhHHHH
Confidence 589999999999999999888 899999999875544333
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.21 Score=56.65 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=35.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+.|.|.|+ |++|..++..|++ .|++|++++++.++.+.+.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk---------------------------~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLK---------------------------LGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHH
Confidence 56888886 9999999999999 8999999999999887654
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.3 Score=51.13 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=64.9
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC---C
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN---T 472 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---a 472 (598)
+|+|+|+ ......+++.|.+.|.+|.+||+.....+ .+.. . +.....++.++++. +
T Consensus 2 ~Ig~IGl----------G~mG~~mA~~L~~~g~~v~v~dr~~~~~~---~~~~----~----g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 2 KLGLIGL----------GKMGGNMAERLREDGHEVVGYDVNQEAVD---VAGK----L----GITARHSLEELVSKLEAP 60 (299)
T ss_pred EEEEEcc----------cHHHHHHHHHHHhCCCEEEEEECCHHHHH---HHHH----C----CCeecCCHHHHHHhCCCC
Confidence 6899987 35678899999999999999998532211 1110 1 23566788888766 6
Q ss_pred CEEEEEeecc-chhhccHHHHHhccCCCcEEEecCCCCC
Q psy11160 473 HAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 473 dalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~i~d 510 (598)
|+|++++..+ ..+++ +..+...+.+..+|+|..++-.
T Consensus 61 dvVi~~vp~~~~~~~v-~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 61 RTIWVMVPAGEVTESV-IKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred CEEEEEecCchHHHHH-HHHHhccCCCCCEEEECCCCCc
Confidence 8999999988 44442 2455555655669999987754
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.35 Score=50.33 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=58.5
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++.+++|+|+|.+ +--..+++..|.++|++|.+++.. +.++.+.++
T Consensus 155 ~l~Gk~v~vIG~S---------~ivG~Pla~lL~~~gatVtv~~s~-------------------------t~~l~~~~~ 200 (284)
T PRK14179 155 ELEGKHAVVIGRS---------NIVGKPMAQLLLDKNATVTLTHSR-------------------------TRNLAEVAR 200 (284)
T ss_pred CCCCCEEEEECCC---------CcCcHHHHHHHHHCCCEEEEECCC-------------------------CCCHHHHHh
Confidence 4589999999953 456678999999999999998432 235778889
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r 506 (598)
.||++|.++..++|-.-+| +++-.+++|..
T Consensus 201 ~ADIVI~avg~~~~v~~~~------ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKEF------VKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHHH------ccCCcEEEEec
Confidence 9999999999999855443 33445888864
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.069 Score=57.62 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|.+...+|+|||+|..|+.+|..|++ +|++|+++++.++
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 39 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGA---------------------------RGHSVTVVERAAR 39 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHh---------------------------cCCcEEEEeCCCc
Confidence 56566799999999999999999999 8999999998764
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.31 Score=51.76 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCC
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~ 78 (598)
|-...++|.|.|+ |++|..++..|++ .|++|++++++.+..+.+..-. .+-
T Consensus 1 ~~~~~k~iLVTGatGfIGs~l~~~L~~---------------------------~G~~V~~~~r~~~~~~~~~~~~~~~~ 53 (351)
T PLN02650 1 MGSQKETVCVTGASGFIGSWLVMRLLE---------------------------RGYTVRATVRDPANVKKVKHLLDLPG 53 (351)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHH---------------------------CCCEEEEEEcCcchhHHHHHHHhccC
Confidence 3345678999986 9999999999999 8999999999876655432100 000
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
.++.+. .....++-.....++++++|.||-+..
T Consensus 54 ~~~~~~-----~v~~Dl~d~~~~~~~~~~~d~ViH~A~ 86 (351)
T PLN02650 54 ATTRLT-----LWKADLAVEGSFDDAIRGCTGVFHVAT 86 (351)
T ss_pred CCCceE-----EEEecCCChhhHHHHHhCCCEEEEeCC
Confidence 000000 000112212234567788999888763
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.078 Score=56.75 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=32.2
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
++.++|+|||.|.+|+++|..|++ .|++|+++|..+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~---------------------------~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE---------------------------RGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH---------------------------cCCEEEEEecCc
Confidence 456799999999999999999999 889999999764
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.067 Score=57.19 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|.++++|+|||.|..|+.+|..|++ .|++|++++++++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~---------------------------~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRR---------------------------AGIAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEecCCC
Confidence 3456799999999999999999999 7888888887653
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.078 Score=57.26 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=29.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|.|||+|..|+.+|..|++ .|++|+++++++
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRR---------------------------AGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEecCC
Confidence 3689999999999999999999 778888888764
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.35 Score=50.66 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=69.3
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC---C
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN---T 472 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---a 472 (598)
+|+|+|+ ...+..+++.|.+.|.+|.+||+.....+. +.. .+.....++.++++. +
T Consensus 2 ~Ig~IGl----------G~MG~~mA~~L~~~g~~v~v~dr~~~~~~~---~~~--------~g~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 2 QLGMIGL----------GRMGGNMARRLLRGGHEVVGYDRNPEAVEA---LAE--------EGATGADSLEELVAKLPAP 60 (301)
T ss_pred EEEEEcc----------cHHHHHHHHHHHHCCCeEEEEECCHHHHHH---HHH--------CCCeecCCHHHHHhhcCCC
Confidence 6899997 367788999999999999999986432111 110 123556778777765 6
Q ss_pred CEEEEEeeccc-hhhccHHHHHhccCCCcEEEecCCCCCh------hhhhhcccee
Q psy11160 473 HAIVVCTEWDE-FVTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNV 521 (598)
Q Consensus 473 dalii~t~~~~-f~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y 521 (598)
|+++++..+.. .++. +..+...+.+..+++|..+.... +.+++.|+.|
T Consensus 61 dvvi~~v~~~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~ 115 (301)
T PRK09599 61 RVVWLMVPAGEITDAT-IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHF 115 (301)
T ss_pred CEEEEEecCCcHHHHH-HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEE
Confidence 89999998873 3332 34555555555699999876532 3344566655
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.25 Score=52.20 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=67.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||...... . . . ...-..++.+++++
T Consensus 134 l~g~tvgIvG~----------G~IG~~vA~~l~afG~~V~~~~~~~~~~~--~-~---------~-~~~~~~~l~e~l~~ 190 (312)
T PRK15469 134 REDFTIGILGA----------GVLGSKVAQSLQTWGFPLRCWSRSRKSWP--G-V---------Q-SFAGREELSAFLSQ 190 (312)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEEeCCCCCCC--C-c---------e-eecccccHHHHHhc
Confidence 46899999998 46788999999999999999998543210 0 0 0 01113578899999
Q ss_pred CCEEEEEeeccch-hh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWDEF-VT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~~f-~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|+++.....- ++ ++ ....+.|++..++++.-+ +.|.+.+
T Consensus 191 aDvvv~~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~vVde~aL 236 (312)
T PRK15469 191 TRVLINLLPNTPETVGIIN-QQLLEQLPDGAYLLNLARGVHVVEDDL 236 (312)
T ss_pred CCEEEECCCCCHHHHHHhH-HHHHhcCCCCcEEEECCCccccCHHHH
Confidence 9999998876542 22 34 344556777667777554 5666444
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.76 Score=54.91 Aligned_cols=113 Identities=12% Similarity=0.180 Sum_probs=66.6
Q ss_pred CCCceEEEECCChhHHHH-HHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHHcCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPT-CSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWNSNKLPIYE 80 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~~~~~~~~e 80 (598)
.++++|.|||+|-.|.+. |..|++ .|++|+++|.++. ..+.+.+.
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~---------------------------~G~~V~~sD~~~~~~~~~L~~~------ 48 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLD---------------------------RGYSVSGSDLSEGKTVEKLKAK------ 48 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHH---------------------------CCCeEEEECCCCChHHHHHHHC------
Confidence 345689999999999998 989998 8999999997542 23333321
Q ss_pred CChHHHHhhhcCCceEEe-cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHH-------HHHHHHHcCCCcEE
Q psy11160 81 PGLDEVVKKTRDVNLFFS-TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAA-------ARMIAEIATDNKIV 152 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~iv 152 (598)
++.+. ....+.+.++|+||++-.-|.+ .+.+...++. .+-+....+...+|
T Consensus 49 -------------gi~~~~g~~~~~~~~~d~vV~SpgI~~~--------~p~~~~a~~~gi~v~~~~el~~~~~~~~~~I 107 (809)
T PRK14573 49 -------------GARFFLGHQEEHVPEDAVVVYSSSISKD--------NVEYLSAKSRGNRLVHRAELLAELMQEQISI 107 (809)
T ss_pred -------------CCEEeCCCCHHHcCCCCEEEECCCcCCC--------CHHHHHHHHCCCcEEeHHHHHHHHHcCCCEE
Confidence 11111 1122356789998887444432 1222221110 11223333433688
Q ss_pred EEecCCchHHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMNV 169 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~ 169 (598)
.+..|.--.||.++...
T Consensus 108 aITGTnGKTTTt~li~~ 124 (809)
T PRK14573 108 LVSGSHGKTTVSSLITA 124 (809)
T ss_pred EEECCCCHHHHHHHHHH
Confidence 88888877776665543
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.69 Score=51.95 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=30.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|.|+|+|..|.++|..|.+ .|++|+++|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~---------------------------~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCAR---------------------------HGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHH---------------------------CCCEEEEEcCCC
Confidence 3589999999999999999998 899999999754
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.58 Score=49.82 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=33.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
-.+|+|+|+|-+|.- |..+|+. .|.+|+++|+++++.+..++
T Consensus 167 G~~V~I~G~GGlGh~-avQ~Aka--------------------------~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 167 GKWVAVVGAGGLGHM-AVQYAKA--------------------------MGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CCEEEEECCcHHHHH-HHHHHHH--------------------------cCCeEEEEeCChHHHHHHHH
Confidence 468999999966654 5555551 68999999999999987764
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.42 Score=50.78 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=68.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.++++||+|+ ..-...+++.|..-|.+|.+|||.-.++ .... + ...+.+ +.++++
T Consensus 143 ~l~gktvGIiG~----------GrIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~--------~---~~~y~~-l~ell~ 199 (324)
T COG1052 143 DLRGKTLGIIGL----------GRIGQAVARRLKGFGMKVLYYDRSPNPE-AEKE--------L---GARYVD-LDELLA 199 (324)
T ss_pred CCCCCEEEEECC----------CHHHHHHHHHHhcCCCEEEEECCCCChH-HHhh--------c---Cceecc-HHHHHH
Confidence 357999999998 4678899999998899999999976522 2221 1 135555 999999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
.+|+|++..+--. -++ ++-+.+. .|++..+++.+-+ +.|.+.
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~-~mk~ga~lVNtaRG~~VDe~A 245 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELA-KMKPGAILVNTARGGLVDEQA 245 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHH-hCCCCeEEEECCCccccCHHH
Confidence 9999999876432 222 4655554 5776667766544 556543
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.56 Score=46.47 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=30.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|.|||.|.+|..-+..|.+ .|.+|++++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~---------------------------~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK---------------------------AGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEEcCCC
Confidence 3689999999999999999999 789999998753
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.21 Score=51.37 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=31.6
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI 68 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~ 68 (598)
+|.|+|+ |++|..++..|.+ .|++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~---------------------------~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA---------------------------ASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh---------------------------CCCcEEEEeCCCccc
Confidence 4789988 9999999999999 899999999998754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.83 Score=50.18 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=64.2
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HH----HHH--cCCCCCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IR----QWN--SNKLPIY 79 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~----~~~--~~~~~~~ 79 (598)
||.|||+|-.|.++|..|.+ .|++|+++|..... .+ .+. .|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~---------------------------~G~~V~~sD~~~~~~~~~~~~~~~~~~gi---- 49 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHK---------------------------KGAEVTVTDLKPNEELEPSMGQLRLNEGS---- 49 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHH---------------------------CCCEEEEEeCCCCccchhHHHHHhhccCc----
Confidence 58899999999999999999 89999999975432 11 111 111
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEE
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIV 152 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~iv 152 (598)
.+..-.+ .+.+.++|+||++-.-|.+ .+.+...++ -.+-+.... +.++|
T Consensus 50 --------------~~~~g~~-~~~~~~~d~vv~sp~i~~~--------~p~~~~a~~~~i~i~~~~e~~~~~~-~~~~I 105 (433)
T TIGR01087 50 --------------VLHTGLH-LEDLNNADLVVKSPGIPPD--------HPLVQAAAKRGIPVVGDIELFLRLV-PLPVV 105 (433)
T ss_pred --------------EEEecCc-hHHhccCCEEEECCCCCCC--------CHHHHHHHHCCCcEEEHHHHHHhhc-CCCEE
Confidence 1111123 3457789998887544432 222222221 012233434 55788
Q ss_pred EEecCCchHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMN 168 (598)
Q Consensus 153 v~~STv~~~~~~~~~~ 168 (598)
.+..|---.||-.+..
T Consensus 106 ~VTGT~GKTTTt~li~ 121 (433)
T TIGR01087 106 AITGTNGKTTTTSLLY 121 (433)
T ss_pred EEECCCCHHHHHHHHH
Confidence 8888877766665544
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.27 Score=43.08 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=55.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.|||.|.+|..=+..|.+ .|-+|+++..+.+.. + +...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~---------------------------~gA~v~vis~~~~~~---~-~~i~------- 48 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE---------------------------AGAKVTVISPEIEFS---E-GLIQ------- 48 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC---------------------------CTBEEEEEESSEHHH---H-TSCE-------
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEECCchhhh---h-hHHH-------
Confidence 4689999999999999999999 789999999875111 1 2110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
+ ....+++.+.++++||++++.+ .+. +.|....+...+.++.+..|.
T Consensus 49 ----------~-~~~~~~~~l~~~~lV~~at~d~---------------~~n---~~i~~~a~~~~i~vn~~D~p~ 95 (103)
T PF13241_consen 49 ----------L-IRREFEEDLDGADLVFAATDDP---------------ELN---EAIYADARARGILVNVVDDPE 95 (103)
T ss_dssp ----------E-EESS-GGGCTTESEEEE-SS-H---------------HHH---HHHHHHHHHTTSEEEETT-CC
T ss_pred ----------H-HhhhHHHHHhhheEEEecCCCH---------------HHH---HHHHHHHhhCCEEEEECCCcC
Confidence 1 1222345688999999985432 222 344445554556666555543
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=5.3 Score=42.15 Aligned_cols=265 Identities=13% Similarity=0.174 Sum_probs=139.0
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeC---CHHHHH-HHHcCCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDK---SEERIR-QWNSNKL 76 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~---~~~~~~-~~~~~~~ 76 (598)
|..+.++-++|+|.+..-+|.-+.. .| ..+-.+.+ +.+++. .++.+..
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~---------------------------h~d~~lg~~~r~s~rse~l~qala~~~q 53 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSA---------------------------HGDARLGLYNRPSTRSERLKQALALTPQ 53 (431)
T ss_pred CCcccceeEeecCcHHHHHHHHHHh---------------------------ccCceeeccCCCCchhHHHHHHHhcCCe
Confidence 3456789999999999999998887 22 34444443 233333 3333322
Q ss_pred CCCCCChHHHHhhhcCCceE---EecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHH-HHcC-CCcE
Q psy11160 77 PIYEPGLDEVVKKTRDVNLF---FSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIA-EIAT-DNKI 151 (598)
Q Consensus 77 ~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~-~~~i 151 (598)
++-.+-.+.. +...++.+ +-.+++.+..+=+.+|+|||++. -.+++++|- +.++ -.++
T Consensus 54 -l~l~~q~eah-r~leg~~~id~~~kd~a~~~~dwqtlilav~aDa---------------Y~dvlqqi~~e~L~~vk~v 116 (431)
T COG4408 54 -LYLQGQGEAH-RQLEGSVTIDCYIKDLAQAVGDWQTLILAVPADA---------------YYDVLQQIPWEALPQVKSV 116 (431)
T ss_pred -EEEEeccHHH-HhhcCceehhHHHhhHHHhhchhheEEEEeecHH---------------HHHHHhcCCHhHhccccEE
Confidence 3333333321 11122222 23567777778899999997752 345555542 2232 2456
Q ss_pred EEEecCCchH-HHHHHHHHHhhccCCcccccCCCCCchHH------HHHHHHHHHHhcCCceEEEecccc-chhhhhHHH
Q psy11160 152 VVEKSTVPVR-AAESIMNVLKANHKTNVQFQGRAADLKYV------EAAARMIAEIATDNKIVVEKSTVP-VRAAESIMN 223 (598)
Q Consensus 152 vv~~STv~~~-~~~~~~~~l~~~~~~~~~~~~~~~dl~~l------~~A~~~Ia~~l~~~~lvv~eSTvP-~gtt~~~~~ 223 (598)
|.+++|..-+ ..+..+..+...+ +--.+...-.|.+++ .+-++.|-+ -+-+-|+=+ -+..+.++.
T Consensus 117 iLiSptfGsn~lv~~~mnk~~~da-eViS~SsY~~dTk~id~~~p~~alTkavKk------riYlgs~~~ns~~~e~l~~ 189 (431)
T COG4408 117 ILISPTFGSNLLVQNLMNKAGRDA-EVISLSSYYADTKYIDAEQPNRALTKAVKK------RIYLGSQHGNSGSAEMLTA 189 (431)
T ss_pred EEecccccccHHHHHHHhhhCCCc-eEEEeehhcccceeecccCcchHHHHHHhH------heeeccCCCCChHHHHHHH
Confidence 7777777554 4444444221000 000000111111111 111222211 123334332 233444555
Q ss_pred HHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe---cCchhHHHH
Q psy11160 224 VLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT---TNTWSSELS 300 (598)
Q Consensus 224 ~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~---~~~~~Ae~~ 300 (598)
+++. .|.+..++.+|.- .++..+....+|+.+| + +. + +..+|.......-++- .++-+.
T Consensus 190 v~aq---~~I~v~~~esp~~-AEtrnit~YVHpPlfl-n-df------s---L~aif~~~~~p~yvYKlyPEGPIt~--- 251 (431)
T COG4408 190 VLAQ---HGIDVEPCESPLA-AETRNITLYVHPPLFL-N-DF------S---LQAIFYPEQRPQYVYKLYPEGPITP--- 251 (431)
T ss_pred HHHh---cCCceEEcCChhh-hhhcccceeecCcchh-h-hh------H---HHHHhCCcCCCceeEecCCCCCCCH---
Confidence 5544 4677788889864 5677777788888664 3 21 2 3556766653222221 223222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 301 KLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 301 Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
-+..+ .-...-|+..+-.++|++.-.+++.++-+.
T Consensus 252 ~lIr~-----mr~lwke~m~ll~r~~ve~iNLLrFl~ddN 286 (431)
T COG4408 252 ALIRD-----MRGLWKEYMRLLNRLGVEEINLLRFLNDDN 286 (431)
T ss_pred HHHHH-----HHHHHHHHHHHHHHcCCCchhHHHHhccCC
Confidence 12222 223567889999999999999999998663
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.25 Score=52.89 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.0
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCc
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQ 32 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~ 32 (598)
|....+||+|||+ ||+|..+...|+. .|+|.
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~-h~~f~ 32 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEK-ETKFN 32 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHH-CCCCC
Confidence 4555679999998 9999999999995 35553
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.29 Score=51.72 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=63.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+-.+++.|..-|.+|.+||+..... .. . . ..++.++++.
T Consensus 145 l~gktvgIiG~----------G~IG~~va~~l~~fg~~V~~~~~~~~~~-~~------------~---~-~~~l~ell~~ 197 (314)
T PRK06932 145 VRGSTLGVFGK----------GCLGTEVGRLAQALGMKVLYAEHKGASV-CR------------E---G-YTPFEEVLKQ 197 (314)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHhcCCCEEEEECCCcccc-cc------------c---c-cCCHHHHHHh
Confidence 47999999998 3678889999999999999999853211 00 0 1 2478899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHD 512 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~ 512 (598)
+|+|+++.+... -++ ++-+.+. .|++..+++.+-+ +.|.+
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~-~mk~ga~lIN~aRG~~Vde~ 241 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLA-LMKPTAFLINTGRGPLVDEQ 241 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHH-hCCCCeEEEECCCccccCHH
Confidence 999999887543 222 4544444 5666556665433 44543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.8 Score=42.64 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=48.4
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++++++|.|+|= .+.-...++..|.++|++|...+-.. .++.++++
T Consensus 25 ~~~gk~v~VvGr---------s~~vG~pla~lL~~~gatV~~~~~~t-------------------------~~l~~~v~ 70 (140)
T cd05212 25 RLDGKKVLVVGR---------SGIVGAPLQCLLQRDGATVYSCDWKT-------------------------IQLQSKVH 70 (140)
T ss_pred CCCCCEEEEECC---------CchHHHHHHHHHHHCCCEEEEeCCCC-------------------------cCHHHHHh
Confidence 358999999994 34667889999999999999876421 34667889
Q ss_pred CCCEEEEEeeccch
Q psy11160 471 NTHAIVVCTEWDEF 484 (598)
Q Consensus 471 ~adalii~t~~~~f 484 (598)
.||++|.+|..+.+
T Consensus 71 ~ADIVvsAtg~~~~ 84 (140)
T cd05212 71 DADVVVVGSPKPEK 84 (140)
T ss_pred hCCEEEEecCCCCc
Confidence 99999999999865
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.12 Score=50.08 Aligned_cols=70 Identities=13% Similarity=0.406 Sum_probs=46.0
Q ss_pred CCceEEEECCChhHHHHHHH-HHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
++.++.+||+|.+|.+++.. +.+ ..|.++ -++|.+++++-.--.+ .|+++
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~--------------------------~~~~~iv~~FDv~~~~VG~~~~~-v~V~~- 134 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSK--------------------------KNGMKIVAAFDVDPDKVGTKIGD-VPVYD- 134 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchh--------------------------hcCceEEEEecCCHHHhCcccCC-eeeec-
Confidence 35689999999999998753 332 156665 5689999987543332 44432
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNT 117 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~t 117 (598)
+ ++++.-++ +.|+.|+|||.
T Consensus 135 -~---------------d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 135 -L---------------DDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred -h---------------HHHHHHHHhcCccEEEEEccH
Confidence 1 22333343 78899999865
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.28 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHH
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~ 26 (598)
.+.+||+|+|+ ||+|..+...|+.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~ 29 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTD 29 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHh
Confidence 34689999997 9999999999987
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.1 Score=49.48 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=65.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~~~~~~~~~e~~ 82 (598)
+++|.|||+|-.|.+.+..|.+ ++.|++|+++|.++.. .+.+.+|.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~-------------------------~~~~~~v~~~D~~~~~~~~~~l~~g~------- 54 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRK-------------------------YQPQLTVKVIDTRETPPGQEQLPEDV------- 54 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHh-------------------------cCCCCeEEEEeCCCCchhHHHhhcCC-------
Confidence 4689999999999999999988 1114899999976422 12222210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEEe
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVEK 155 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~~ 155 (598)
.+.......+.+.++|+||++-.-|.+ .+.+...++ -.+-+.... +.++|-+.
T Consensus 55 -----------~~~~g~~~~~~~~~~d~vV~SpgI~~~--------~p~~~~a~~~gi~i~~~~el~~~~~-~~~~I~VT 114 (438)
T PRK04663 55 -----------ELHSGGWNLEWLLEADLVVTNPGIALA--------TPEIQQVLAAGIPVVGDIELFAWAV-DKPVIAIT 114 (438)
T ss_pred -----------EEEeCCCChHHhccCCEEEECCCCCCC--------CHHHHHHHHCCCcEEEHHHHHHhhc-CCCEEEEe
Confidence 111121122356789988887544432 122222111 011222333 45788888
Q ss_pred cCCchHHHHHHHHH
Q psy11160 156 STVPVRAAESIMNV 169 (598)
Q Consensus 156 STv~~~~~~~~~~~ 169 (598)
.|.--.||.++...
T Consensus 115 GTnGKTTTt~ll~~ 128 (438)
T PRK04663 115 GSNGKSTVTDLTGV 128 (438)
T ss_pred CCCCHHHHHHHHHH
Confidence 88887777765543
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.9 Score=50.28 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=64.1
Q ss_pred eEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCCCChH
Q psy11160 7 HICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 7 ~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e~~~~ 84 (598)
+|-|||.|-.|.+ +|..|++ .|++|+++|.+... .+.+.+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~---------------------------~G~~v~~~D~~~~~~~~~l~~~---------- 43 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN---------------------------RGYQVSGSDIAENATTKRLEAL---------- 43 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH---------------------------CCCeEEEECCCcchHHHHHHHC----------
Confidence 5789999999998 9999999 89999999976532 2223321
Q ss_pred HHHhhhcCCceEEec-CHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFST-DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~~S 156 (598)
++.+.. ...+.+.++|+||++-.-|.+ .+.+...++ -.+-+.+..++..+|.+..
T Consensus 44 ---------gi~~~~g~~~~~~~~~d~vV~spgi~~~--------~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITG 106 (448)
T TIGR01082 44 ---------GIPIYIGHSAENLDDADVVVVSAAIKDD--------NPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAG 106 (448)
T ss_pred ---------cCEEeCCCCHHHCCCCCEEEECCCCCCC--------CHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEEC
Confidence 122221 112356789998887444431 122222111 1122334444457888888
Q ss_pred CCchHHHHHHHH
Q psy11160 157 TVPVRAAESIMN 168 (598)
Q Consensus 157 Tv~~~~~~~~~~ 168 (598)
|---.||-.+..
T Consensus 107 TnGKTTTt~ll~ 118 (448)
T TIGR01082 107 THGKTTTTAMIA 118 (448)
T ss_pred CCChHHHHHHHH
Confidence 877766655443
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.094 Score=56.09 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=31.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+|+|||.|..|+.+|..|++ .|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~---------------------------~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE---------------------------QGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEecCCc
Confidence 589999999999999999999 7899999998764
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.34 Score=50.39 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=63.2
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
.+|+|+|+. ..+..+++.|.+.|.+|.+||+.....+.... . +.....++.++++++|+
T Consensus 3 ~~IgviG~G----------~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------~---g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 3 MKVGFIGLG----------IMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA--------A---GAETASTAKAVAEQCDV 61 (296)
T ss_pred ceEEEEccC----------HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH--------C---CCeecCCHHHHHhcCCE
Confidence 479999973 45678999999999999999986432211110 1 23456788889999999
Q ss_pred EEEEeeccch-hhcc--HHHHHhccCCCcEEEecCCCCC
Q psy11160 475 IVVCTEWDEF-VTLD--YKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 475 lii~t~~~~f-~~ld--~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+|+++..+.. +..- .+.+...+.+..+|+|...+..
T Consensus 62 vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~ 100 (296)
T PRK11559 62 IITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAP 100 (296)
T ss_pred EEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCH
Confidence 9999875432 2110 0223444555668999888753
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.33 Score=47.62 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=59.9
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||-+ .||.|+|..|.. .|..|+.+|++.-... ..+.. +
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~---------------------------~~AtVti~~~~~~~~~--~~~~~-~----- 106 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLAN---------------------------DGARVYSVDINGIQVF--TRGES-I----- 106 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEEecCccccc--ccccc-c-----
Confidence 3689999984 689999999999 7899999987643321 11100 0
Q ss_pred HHHHhhhcCCceEEe--cC----HHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFS--TD----IKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~--~~----~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
+-..| .+ +.+.+++||+||.+++.|--. +. .+.+++|.+||+-++
T Consensus 107 ----------~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~-------------i~------~d~ik~GavVIDVGi 157 (197)
T cd01079 107 ----------RHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYK-------------VP------TELLKDGAICINFAS 157 (197)
T ss_pred ----------ccccccccchhhHHHHHhhhCCEEEEccCCCCCc-------------cC------HHHcCCCcEEEEcCC
Confidence 00111 12 567889999999999887310 11 235679999998654
Q ss_pred C
Q psy11160 158 V 158 (598)
Q Consensus 158 v 158 (598)
-
T Consensus 158 ~ 158 (197)
T cd01079 158 I 158 (197)
T ss_pred C
Confidence 3
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.11 Score=56.24 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCceEEEECCChhHHHHHHHHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~ 26 (598)
...+|.|||.|.+|+++|..|++
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~ 27 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD 27 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc
Confidence 34689999999999999999999
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.099 Score=54.60 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=28.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.+|+|||+|..|+.+|..|++ .|++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~---------------------------~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR---------------------------AGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH---------------------------TTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHh---------------------------cccccccchhccc
Confidence 479999999999999999999 8899999998643
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.41 Score=50.01 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=64.7
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
++|+|+|+. .....++..|.+.|.+|.+||+.....+ .+.. . +...+.++.++++++|+
T Consensus 2 ~~Ig~IGlG----------~mG~~mA~~l~~~G~~V~v~d~~~~~~~---~~~~----~----g~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 2 AAIAFIGLG----------QMGSPMASNLLKQGHQLQVFDVNPQAVD---ALVD----K----GATPAASPAQAAAGAEF 60 (296)
T ss_pred CeEEEEeeC----------HHHHHHHHHHHHCCCeEEEEcCCHHHHH---HHHH----c----CCcccCCHHHHHhcCCE
Confidence 379999973 5678899999999999999998643221 1110 1 22456788899999999
Q ss_pred EEEEeeccc-hhhc--cHHHHHhccCCCcEEEecCCCCC
Q psy11160 475 IVVCTEWDE-FVTL--DYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 475 lii~t~~~~-f~~l--d~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+|+++..+. .++. ....+...+.+..+++|...+..
T Consensus 61 Vi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p 99 (296)
T PRK15461 61 VITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHP 99 (296)
T ss_pred EEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCH
Confidence 999998764 3322 11233334445568899888764
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.47 Score=51.64 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=69.2
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHH-HcCCeEEEeCCCCChhhhhhhhhcccc---cccCC-CceEecCChh
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLL-YEGAKLKIYDPKVEPSQIIQDLKELDP---ELLDH-NAVSILDDPY 466 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~-~~G~~V~~~DP~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~ 466 (598)
+.+++|||+|+ .+-+..+++.|. .-|.+|.+|||...... ......++. ..+.. ..+....++.
T Consensus 163 L~gktvGIiG~----------G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~L~ 231 (386)
T PLN02306 163 LKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQSTRL-EKFVTAYGQFLKANGEQPVTWKRASSME 231 (386)
T ss_pred CCCCEEEEECC----------CHHHHHHHHHHHhcCCCEEEEECCCCchhh-hhhhhhhcccccccccccccccccCCHH
Confidence 57999999998 367788999985 78999999999864321 100000000 00000 0112346889
Q ss_pred hhccCCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 467 DTVKNTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 467 ~al~~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
++++.+|+|+++..... -++ +|-+.+ +.|++..+++.+.+ +.|.+.+
T Consensus 232 ell~~sDiV~lh~Plt~~T~~lin~~~l-~~MK~ga~lIN~aRG~lVDe~AL 282 (386)
T PLN02306 232 EVLREADVISLHPVLDKTTYHLINKERL-ALMKKEAVLVNASRGPVIDEVAL 282 (386)
T ss_pred HHHhhCCEEEEeCCCChhhhhhcCHHHH-HhCCCCeEEEECCCccccCHHHH
Confidence 99999999999877543 222 455554 46777667777654 5665444
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.029 Score=48.78 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=33.8
Q ss_pred CHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q psy11160 328 DVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLF 389 (598)
Q Consensus 328 d~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~ 389 (598)
..+|++|.+.|..+ ...++| +|+|..+|+++|++ +.++++.+.
T Consensus 2 ~~AEl~K~~~N~~~------a~~iaf--------~Nel~~lce~~giD-----~~~V~~~~~ 44 (96)
T PF00984_consen 2 EEAELIKYAENAFR------ATKIAF--------ANELARLCEKLGID-----VYEVIEAAN 44 (96)
T ss_dssp HHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHHTSB-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHcCCC-----HHHHHHHHc
Confidence 45799999988665 556788 99999999999998 356666553
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.1 Score=56.26 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|++|.|||.|..|+.+|..|++ .|++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~---------------------------~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGR---------------------------HGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEcCCCC
Confidence 3689999999999999999999 7888888887654
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.26 Score=52.57 Aligned_cols=70 Identities=17% Similarity=0.418 Sum_probs=51.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.++|.|+|+ |.||..+|..|+.+ .| .+++++++++++...+.....
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~--------------------------~gv~~lilv~R~~~rl~~La~el~------ 202 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAK--------------------------TGVAELLLVARQQERLQELQAELG------ 202 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhh--------------------------CCCCEEEEEcCCHHHHHHHHHHhc------
Confidence 368999999 89999999999861 24 589999999998887653100
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
...+ .+..+++.++|+||.+...|
T Consensus 203 ---------~~~i---~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 203 ---------GGKI---LSLEEALPEADIVVWVASMP 226 (340)
T ss_pred ---------cccH---HhHHHHHccCCEEEECCcCC
Confidence 0111 24567899999999887554
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.35 Score=50.22 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAI 475 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adal 475 (598)
+|+|+|+ ...+..++..|.+.|.+|.+||+.... .. .+.. . +.....++.++++++|++
T Consensus 1 ~IgvIG~----------G~mG~~iA~~l~~~G~~V~~~dr~~~~--~~-~~~~----~----g~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGL----------GIMGSPMSINLAKAGYQLHVTTIGPEV--AD-ELLA----A----GAVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEe----------cHHHHHHHHHHHHCCCeEEEEcCCHHH--HH-HHHH----C----CCcccCCHHHHHhcCCEE
Confidence 5889887 357788999999999999999986422 21 1111 1 123456788999999999
Q ss_pred EEEeeccch-hhc--cHHHHHhccCCCcEEEecCCCC
Q psy11160 476 VVCTEWDEF-VTL--DYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 476 ii~t~~~~f-~~l--d~~~l~~~m~~~~iI~D~r~i~ 509 (598)
+++...+.. +.. ....+...+.+..+|+|...+.
T Consensus 60 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~ 96 (291)
T TIGR01505 60 FTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSIS 96 (291)
T ss_pred EEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 999876432 111 1122334445556888977665
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.42 Score=52.03 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=33.5
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI 68 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~ 68 (598)
+.++|.|+|. |++|..++..|.+ .|++|++++++..+.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~---------------------------~G~~V~~l~R~~~~~ 97 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVR---------------------------RGYNVVAVAREKSGI 97 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEEechhhc
Confidence 3578999987 9999999999999 899999999987654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.2 Score=53.47 Aligned_cols=42 Identities=24% Similarity=0.443 Sum_probs=35.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSN 74 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~ 74 (598)
.+|.|||+|-+|+++|..|+. .|. +++++|.+.-....+++.
T Consensus 25 ~~VlVvG~GglGs~va~~La~---------------------------aGvg~i~lvD~D~Ve~sNL~RQ 67 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVR---------------------------AGVGKVTIVDRDYVEWSNLQRQ 67 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCccCHHHcCcc
Confidence 689999999999999999999 776 999999986555555543
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.41 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=20.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~ 26 (598)
++||+|||+ ||+|.-+...|..
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~ 24 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAG 24 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhc
Confidence 579999995 9999999999988
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.75 Score=42.83 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=26.9
Q ss_pred CHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 100 DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 100 ~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
++++++++||+|+.+++.+.. +. .+.+++|.+|++-+
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~--------------i~------~~~ikpGa~Vidvg 100 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK--------------VP------TEWIKPGATVINCS 100 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc--------------cC------HHHcCCCCEEEEcC
Confidence 677889999999999877621 11 34578999988533
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.62 Score=40.45 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=65.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.-||+|.-..++...-.. .|.+|+++|.|++.++..++...
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~---------------------------~~~~v~gvD~s~~~~~~a~~~~~-------- 46 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF---------------------------PGARVVGVDISPEMLEIARERAA-------- 46 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH---------------------------TTSEEEEEESSHHHHHHHHHHHH--------
T ss_pred CCEEEEEcCcCCHHHHHHHhcC---------------------------CCCEEEEEeCCHHHHHHHHHHHH--------
Confidence 3578899998855544433223 68899999999999988775320
Q ss_pred HHHhhhcCCceEE-ecCH---HHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFF-STDI---KSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~---~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
......++++ ..|. .+.....|+|+..- .... ...+....+++++.+.+.++++-.+++.+
T Consensus 47 ---~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~-~~~~-------~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 47 ---EEGLSDRITFVQGDAEFDPDFLEPFDLVICSG-FTLH-------FLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ---HTTTTTTEEEEESCCHGGTTTSSCEEEEEECS-GSGG-------GCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hcCCCCCeEEEECccccCcccCCCCCEEEECC-Cccc-------cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 0001123332 2333 22345688887764 1110 01223567788899999999988877653
|
... |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.2 Score=49.24 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=33.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.+||+|+|+|.-|.++|..|.+ .|++|+++|.++.-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~---------------------------~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLK---------------------------LGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHH---------------------------CCCeEEEEcCCCCc
Confidence 6899999999999999999999 89999999987655
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.51 Score=50.22 Aligned_cols=85 Identities=9% Similarity=0.241 Sum_probs=51.5
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcC-CCCCCCCChHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSN-KLPIYEPGLDE 85 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~-~~~~~e~~~~~ 85 (598)
|+|+|+|.+|...+..+... .+.+|++ .|.++++...+... ..+.+. ...+
T Consensus 1 VaInG~GrIGr~varav~~~--------------------------~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~ 53 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--------------------------DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEE 53 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--------------------------CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCC
Confidence 68999999999999988761 4456554 56777754444321 112211 1110
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
...+....++....++++.+.++|+|+.|+|...
T Consensus 54 ~~~~~~~~~l~v~g~~eeLl~~vDiVve~Tp~~~ 87 (333)
T TIGR01546 54 FIPRFEEAGIEVAGTLEDLLEKVDIVVDATPGGI 87 (333)
T ss_pred cceEeccCceEecCCHHHHhhcCCEEEECCCCCC
Confidence 0000012346667788888899999999976543
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.36 Score=50.93 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=31.1
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.++|.|.| .|++|..++..|.+ .|++|+++.++.+.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~---------------------------~g~~V~~~~r~~~~ 45 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQ---------------------------KGYAVNTTVRDPEN 45 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHH---------------------------CCCEEEEEECCCCC
Confidence 46899998 79999999999999 89999888877543
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.15 Score=55.48 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=30.9
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
||+ ..+|.|||+|.+|+.+|..|++ .|++|+++|+.
T Consensus 1 ~m~-~~dV~IvGaG~~Gl~~A~~L~~---------------------------~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQ-SVDVAIIGGGMVGLALAAALKE---------------------------SDLRIAVIEGQ 36 (405)
T ss_pred CCC-cCCEEEECccHHHHHHHHHHHh---------------------------CCCEEEEEcCC
Confidence 565 3589999999999999999999 78888888874
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.17 Score=52.76 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=29.3
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
+|+|||.|..|+++|..|++ .|++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~---------------------------~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR---------------------------RGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH---------------------------TTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEeec
Confidence 48999999999999999999 89999999985
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.14 Score=55.57 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=30.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
....|+|||.|.+|+.+|..|++ .|++|+++|+++
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~---------------------------~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR---------------------------AGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEecCC
Confidence 34679999999999999999999 788888888764
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.68 Score=48.43 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=49.8
Q ss_pred CCCCCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCC
Q psy11160 1 MVQTISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPI 78 (598)
Q Consensus 1 m~~~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~ 78 (598)
|....++|.|.| .|++|..++..|.+ .|++|++..++....+.+..-. ..-
T Consensus 1 ~~~~~~~vlVTGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~ 53 (322)
T PLN02986 1 MNGGGKLVCVTGASGYIASWIVKLLLL---------------------------RGYTVKATVRDLTDRKKTEHLLALDG 53 (322)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCCcchHHHHHHHhccC
Confidence 333457899998 59999999999999 8999998887765433222100 000
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..+.+. .+...++-..+..++++++|+||-+..
T Consensus 54 ~~~~~~-----~~~~Dl~~~~~~~~~~~~~d~vih~A~ 86 (322)
T PLN02986 54 AKERLK-----LFKADLLEESSFEQAIEGCDAVFHTAS 86 (322)
T ss_pred CCCceE-----EEecCCCCcchHHHHHhCCCEEEEeCC
Confidence 000000 000112222345567788999888864
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.5 Score=49.76 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=19.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
.||+|+|. ||+|.-+...|+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~ 23 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSG 23 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhC
Confidence 48999987 9999999999998
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.15 Score=55.30 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.+.|+|||+|.+|+.+|..|++ .|++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~---------------------------~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR---------------------------AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEccC
Confidence 4689999999999999999999 88999999987
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.69 Score=43.60 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=56.9
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhh---ccccc-ccCCCceEecCChhhhccC
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLK---ELDPE-LLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~al~~ 471 (598)
||+|+|- .+-+..++..|...|.+|.+|.+.-..-+..+... .+.+. .+. ..+....|+.+++++
T Consensus 1 KI~ViGa----------G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~-~~i~~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGA----------GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLP-ENIKATTDLEEALED 69 (157)
T ss_dssp EEEEESS----------SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEE-TTEEEESSHHHHHTT
T ss_pred CEEEECc----------CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccC-cccccccCHHHHhCc
Confidence 5888885 46788999999999999999988542211111110 01111 122 256788999999999
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCC
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKP 499 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~ 499 (598)
+|++|++++-..+++ -.+++.....+.
T Consensus 70 ad~IiiavPs~~~~~-~~~~l~~~l~~~ 96 (157)
T PF01210_consen 70 ADIIIIAVPSQAHRE-VLEQLAPYLKKG 96 (157)
T ss_dssp -SEEEE-S-GGGHHH-HHHHHTTTSHTT
T ss_pred ccEEEecccHHHHHH-HHHHHhhccCCC
Confidence 999999998776554 234444444333
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.57 Score=48.71 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.1
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|.|.|. |++|..++..|.+ +|++|+++.++.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~---------------------------~G~~V~~~~R~~ 40 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLS---------------------------RGYTVHAAVQKN 40 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEEEcCc
Confidence 467999986 9999999999999 899999998853
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.43 E-value=4.9 Score=42.29 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=59.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc-c
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV-K 470 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~ 470 (598)
.+..+|+|+|+. ..+-.++..|.+.|.+|.+||+... .+....+ ++....+..+++ .
T Consensus 34 ~~~~kI~IIG~G----------~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~-----------gv~~~~~~~e~~~~ 91 (304)
T PLN02256 34 SRKLKIGIVGFG----------NFGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL-----------GVSFFRDPDDFCEE 91 (304)
T ss_pred CCCCEEEEEeeC----------HHHHHHHHHHHhCCCEEEEEECccH-HHHHHHc-----------CCeeeCCHHHHhhC
Confidence 356799999973 3566788999999999999998742 2221111 123345666665 4
Q ss_pred CCCEEEEEeeccchhhccHHHH-HhccCCCcEEEecCCC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRI-YEGMMKPAYIFDGRKI 508 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l-~~~m~~~~iI~D~r~i 508 (598)
++|+||+++.-..+.++- ..+ ...+.+..+|+|.-.+
T Consensus 92 ~aDvVilavp~~~~~~vl-~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 92 HPDVVLLCTSILSTEAVL-RSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred CCCEEEEecCHHHHHHHH-HhhhhhccCCCCEEEecCCc
Confidence 699999999876544321 222 2223444588887764
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.35 Score=56.16 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=31.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
..+|+|||.|..|+..|..|++ .|++|++|++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~---------------------------~G~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILAR---------------------------AGVQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------cCCcEEEEeCCCC
Confidence 4789999999999999999999 7899999998763
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.65 Score=49.39 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=34.7
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
.|+|.|.| .|++|..++..|+. .|++|++++++.++.+.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~---------------------------~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQ---------------------------RGYTVHATLRDPAKSLHL 50 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEeCChHHHHHH
Confidence 47899998 59999999999999 899999999988766544
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.4 Score=42.05 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=55.5
Q ss_pred HHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEec
Q psy11160 383 QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSIL 462 (598)
Q Consensus 383 ~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (598)
++++...-++++|+|.|+|-+ +.-..+|+..|.++|+.|...+-..
T Consensus 25 ~lL~~~~~~l~Gk~v~VvGrs---------~~VG~Pla~lL~~~~atVt~~h~~T------------------------- 70 (160)
T PF02882_consen 25 ELLEYYGIDLEGKKVVVVGRS---------NIVGKPLAMLLLNKGATVTICHSKT------------------------- 70 (160)
T ss_dssp HHHHHTT-STTT-EEEEE-TT---------TTTHHHHHHHHHHTT-EEEEE-TTS-------------------------
T ss_pred HHHHhcCCCCCCCEEEEECCc---------CCCChHHHHHHHhCCCeEEeccCCC-------------------------
Confidence 344443334689999999952 2356789999999999999976532
Q ss_pred CChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCC
Q psy11160 463 DDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 463 ~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d 510 (598)
.++.+.++.||++|.++..+.|-..+| .++..+++|..--+.
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~i~~~~------ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNLIKADW------IKPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT-B-GGG------S-TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeecccccccccc------ccCCcEEEecCCccc
Confidence 456677889999999999998855443 234458998775544
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.46 Score=49.27 Aligned_cols=73 Identities=12% Similarity=0.351 Sum_probs=54.4
Q ss_pred ceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||-+ .+|.|+|..|.. .|..|+....+.
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~---------------------------~~atVtv~hs~t------------------- 186 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLN---------------------------ADATVTICHSKT------------------- 186 (279)
T ss_pred CEEEEECCCccccHHHHHHHHh---------------------------CCCeeEEEecCh-------------------
Confidence 689999998 999999999988 678888877532
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.++.+.+++||++|.+++.|. .+. ...++++.+||+-++-
T Consensus 187 --------------~~L~~~~~~ADIvI~Avgk~~--------------lv~------~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 187 --------------ENLKAELRQADILVSAAGKAG--------------FIT------PDMVKPGATVIDVGIN 226 (279)
T ss_pred --------------hHHHHHHhhCCEEEECCCccc--------------ccC------HHHcCCCcEEEEeecc
Confidence 235567899999999997652 111 1225899999986654
|
|
| >KOG2741|consensus | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.3 Score=46.86 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=56.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCC-CCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNK-LPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~-~~~~e~ 81 (598)
..-|+||+|+|.++.-.+..|.. .|. .+|+|+ +.|++.++...+.++. .|
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~-~p~-----------------------s~~~Ivava~~s~~~A~~fAq~~~~~---- 56 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHT-LPE-----------------------SNHQIVAVADPSLERAKEFAQRHNIP---- 56 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhcc-Ccc-----------------------cCcEEEEEecccHHHHHHHHHhcCCC----
Confidence 34689999999999988888765 110 367765 4689999988877542 21
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccC--cEEEEecCCCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKA--QLIFISVNTPTK 120 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~a--dviii~v~tp~~ 120 (598)
+.++..++++.+++. |+|.|+.|+|.+
T Consensus 57 ------------~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 57 ------------NPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred ------------CCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 245667888877765 999999988864
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.59 Score=48.69 Aligned_cols=73 Identities=18% Similarity=0.399 Sum_probs=55.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||- ..||.|+|..|.. .|..|+++..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~---------------------------~~aTVtichs--------------------- 187 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLR---------------------------EDATVTLAHS--------------------- 187 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Confidence 68999997 6789999999998 6778887642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.|.++++.+++||+||.+++.|-- + =...+++|.+|++-.+-
T Consensus 188 ------------~T~~l~~~~~~ADIvIsAvGkp~~--------------i------~~~~vk~GavVIDVGin 229 (287)
T PRK14173 188 ------------KTQDLPAVTRRADVLVVAVGRPHL--------------I------TPEMVRPGAVVVDVGIN 229 (287)
T ss_pred ------------CCCCHHHHHhhCCEEEEecCCcCc--------------c------CHHHcCCCCEEEEccCc
Confidence 134667788999999999988731 1 12456899999985543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.55 Score=54.64 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=30.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|+|||.|..|++.|..|++ .|++|+++|+++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~---------------------------~G~~V~V~E~~~ 360 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLAR---------------------------NGVAVTVYDRHP 360 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEecCC
Confidence 4689999999999999999999 789999999764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.15 Score=55.61 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+|.|||+|..|+.+|..|++ .|++|++++++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ---------------------------RGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEEcCCc
Confidence 589999999999999999999 7899999998754
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.16 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~ 26 (598)
|.....+|.|||.|..|+++|..|++
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~ 26 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQ 26 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhc
Confidence 44556789999999999999999999
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.15 Score=54.95 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=30.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
++|+|||.|..|+++|..|++ .|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR---------------------------YGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH---------------------------CCCceEEEeCCCC
Confidence 489999999999999999999 7888888887643
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.32 Score=49.67 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=44.9
Q ss_pred EEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 8 ICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 8 I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
|.|.| +|++|..++..|++ .|++|+++++++.....+.. ..+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~-------~~~~~- 45 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK---------------------------DGHEVTILTRSPPAGANTKW-------EGYKP- 45 (292)
T ss_pred CEEEcccchhhHHHHHHHHH---------------------------cCCEEEEEeCCCCCCCcccc-------eeeec-
Confidence 35676 59999999999999 89999999998765432210 00000
Q ss_pred HhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 87 VKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
... ....+++.++|+||-+...+
T Consensus 46 --------~~~-~~~~~~~~~~D~Vvh~a~~~ 68 (292)
T TIGR01777 46 --------WAP-LAESEALEGADAVINLAGEP 68 (292)
T ss_pred --------ccc-cchhhhcCCCCEEEECCCCC
Confidence 000 22334678899999988654
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.57 Score=52.27 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|+|||.|..|+..|..|+. .|++|+++|..+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~---------------------------~G~~V~i~e~~~ 174 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILAR---------------------------AGVQVVVFDRHP 174 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHH---------------------------cCCeEEEEecCC
Confidence 4689999999999999999999 789999998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.66 Score=48.28 Aligned_cols=74 Identities=18% Similarity=0.407 Sum_probs=55.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||- ..||.|+|..|.. .|..|++++..
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~---------------------------~~atVt~chs~------------------- 191 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLN---------------------------ENATVTYCHSK------------------- 191 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---------------------------CCCEEEEEeCC-------------------
Confidence 368999987 6799999999998 77889887531
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||++|.+++.|.- +. .+.+++|.+|++-++-
T Consensus 192 --------------t~~l~~~~~~ADIvI~AvG~p~~--------------i~------~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 192 --------------TKNLAELTKQADILIVAVGKPKL--------------IT------ADMVKEGAVVIDVGVN 232 (284)
T ss_pred --------------chhHHHHHHhCCEEEEecCCCCc--------------CC------HHHcCCCCEEEEeecc
Confidence 23566788999999999987731 11 2346899999986544
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.17 Score=57.33 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=30.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|.|||+|.+|+.+|..|++ .|++|+++|+.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~---------------------------~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGR---------------------------RGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHH---------------------------CCCcEEEEeCCC
Confidence 3589999999999999999999 788888888764
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.46 Score=54.23 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=29.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
..+|+|||+|..|+..|..|++ .|++|+++|..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~---------------------------~G~~V~v~e~~ 169 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRR---------------------------MGHAVTIFEAG 169 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEecC
Confidence 4689999999999999999999 78889999864
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.67 Score=49.90 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=34.7
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
+.++|.|.|. |++|..++..|+. .|++|+++.++.+..+.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~---------------------------~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLR---------------------------HGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHH
Confidence 3568999986 9999999999999 899999988887766554
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.95 Score=47.46 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=56.4
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++++++|+|+|=+ +.....++..|.++|++|.+++..- .++.++++
T Consensus 155 ~~~Gk~V~viGrs---------~~mG~PmA~~L~~~g~tVtv~~~rT-------------------------~~l~e~~~ 200 (296)
T PRK14188 155 DLSGLNAVVIGRS---------NLVGKPMAQLLLAANATVTIAHSRT-------------------------RDLPAVCR 200 (296)
T ss_pred CCCCCEEEEEcCC---------cchHHHHHHHHHhCCCEEEEECCCC-------------------------CCHHHHHh
Confidence 4589999999921 2467889999999999999986421 24567788
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r 506 (598)
.||++|.++..+++-.-+| +++-.+|+|.-
T Consensus 201 ~ADIVIsavg~~~~v~~~~------lk~GavVIDvG 230 (296)
T PRK14188 201 RADILVAAVGRPEMVKGDW------IKPGATVIDVG 230 (296)
T ss_pred cCCEEEEecCChhhcchhe------ecCCCEEEEcC
Confidence 9999999999988644332 33445888875
|
|
| >KOG0022|consensus | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.54 Score=49.19 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=37.1
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~ 73 (598)
+.-+.++|+|||.||++.+..... .| -+++++|+|++|.+..++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka---------------------------~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKA---------------------------AGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHh---------------------------cCcccEEEEecCHHHHHHHHh
Confidence 345789999999999999987766 44 499999999999998774
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.1 Score=45.56 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=36.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.++|.|.|+ |.+|..+|..|++ .|++|++.++++++++.+..
T Consensus 3 ~k~vlItGasggiG~~la~~l~~---------------------------~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA---------------------------QGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHh
Confidence 357888886 9999999999999 89999999999998877653
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.21 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=20.1
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
..|+|||.|.+|+++|..|++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~ 23 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQE 23 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHH
Confidence 589999999999999999999
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.34 Score=56.43 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=30.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.++|+|||.|..|+..|..|+. .|++|+++|.++.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~---------------------------~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLR---------------------------KGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCcEEEEecCCC
Confidence 4689999999999999999999 7888998887654
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=1 Score=52.63 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=30.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|||.|.| +|++|..++..|.+ .|++|+++|+++.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~---------------------------~G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIA---------------------------AGHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEEeCChh
Confidence 5899999 69999999999999 8999999998754
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.35 Score=48.60 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=33.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
.||.|+|+|-+|+.+|..|+. .|. +++++|.+.-....+++
T Consensus 22 ~~VlivG~GglGs~va~~La~---------------------------~Gvg~i~lvD~D~ve~sNL~R 63 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAA---------------------------AGVGKLGLVDDDVVELSNLQR 63 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------cCCCEEEEEcCCEEcCccccc
Confidence 689999999999999999999 564 88888877544444544
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.1 Score=47.19 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=64.5
Q ss_pred ccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCC
Q psy11160 46 CSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFG 123 (598)
Q Consensus 46 ~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~ 123 (598)
+.++|+. ..+.+.++|+++ ++.+.... ++.+.... ....++.+++..+++++||+||++...|.+++.
T Consensus 5 g~~~g~~-~~~~l~L~D~~~~~~~a~g~~~--------Dl~da~~~-~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~ 74 (309)
T PLN00135 5 GVMLGPD-QPVILHMLDIPPAAEALNGVKM--------ELIDAAFP-LLKGVVATTDVVEACKGVNIAVMVGGFPRKEGM 74 (309)
T ss_pred ccccCCC-CeEEEEEecCcccccchhhHHH--------HHHhhhHH-hcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCC
Confidence 4566665 468999999988 77654321 01111100 011355566744689999999999988876543
Q ss_pred CCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHHHHH
Q psy11160 124 NGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMN 168 (598)
Q Consensus 124 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~~~ 168 (598)
++.+ -..+.+.+++....|.++..++.++++-| -|....-.++.
T Consensus 75 sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvs-NPvDv~t~~~~ 119 (309)
T PLN00135 75 ERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVA-NPANTNALILK 119 (309)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC-CcHHHHHHHHH
Confidence 2111 12245566777777777655555554434 56655544443
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.78 Score=51.48 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=75.0
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhh-hhhhhhcccccccCCCceEecCChhhhccC-
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQ-IIQDLKELDPELLDHNAVSILDDPYDTVKN- 471 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~- 471 (598)
-.+|+++||. .....+++.|.+.|++|.+||.-....+ +.+.. ...|.. .+..+.++.++++.
T Consensus 6 ~~~IG~IGLG----------~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~----~~~Ga~-~~~~a~s~~e~v~~l 70 (493)
T PLN02350 6 LSRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERA----KKEGNL-PLYGFKDPEDFVLSI 70 (493)
T ss_pred CCCEEEEeeH----------HHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh----hhcCCc-ccccCCCHHHHHhcC
Confidence 3579999984 6788999999999999999998543221 11100 000211 22356788888876
Q ss_pred --CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh------hhhhhccceeee
Q psy11160 472 --THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNVHT 523 (598)
Q Consensus 472 --adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y~~ 523 (598)
+|+|+++....+--+--++.+...+.+..+|+|+.++.-. +.+.+.|+.|-.
T Consensus 71 ~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld 130 (493)
T PLN02350 71 QKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG 130 (493)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 9999999887763322224555556556699999999632 344456776643
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.9 Score=50.76 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=73.7
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc---C
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK---N 471 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~ 471 (598)
.+|+|+|+ ....-.++..|.+.|++|.+||.-....+ .+.......| . .+..+.++.++++ .
T Consensus 2 ~~IgvIGL----------G~MG~~lA~nL~~~G~~V~v~dr~~~~~~---~l~~~~~~~g-~-~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 2 SDIGLIGL----------AVMGQNLALNIASRGFKISVYNRTYEKTE---EFVKKAKEGN-T-RVKGYHTLEELVNSLKK 66 (470)
T ss_pred CEEEEEeE----------hHHHHHHHHHHHHCCCeEEEEeCCHHHHH---HHHHhhhhcC-C-cceecCCHHHHHhcCCC
Confidence 37999998 36788999999999999999997543211 1100000001 1 1335678888876 4
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh------hhhhhccceeee
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNVHT 523 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y~~ 523 (598)
+|+++++....+.-+--++.+...+.+..+|+|+.+.... +.+.+.|+.|-.
T Consensus 67 ~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld 124 (470)
T PTZ00142 67 PRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG 124 (470)
T ss_pred CCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc
Confidence 8999998777654332335566666666699999998632 444456776643
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.2 Score=54.01 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=20.1
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
.+|+|||.|..|+++|..|++
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 589999999999999999999
|
|
| >PTZ00245 ubiquitin activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.4 Score=44.98 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=70.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|.|||+|-+|.++|..|+. .|. .++++|-+.-....+++....-.+-|-.
T Consensus 27 SrVLVVG~GGLGsEVAKnLaL---------------------------AGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~ 79 (287)
T PTZ00245 27 TSVALHGVAGAAAEAAKNLVL---------------------------AGVRAVAVADEGLVTDADVCTNYLMQGEAGGT 79 (287)
T ss_pred CeEEEECCCchHHHHHHHHHH---------------------------cCCCeEEEecCCccchhhhccccccccccCCc
Confidence 689999999999999999999 674 7999998876666666543211111211
Q ss_pred H---HHhhh--cCC--ceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 E---VVKKT--RDV--NLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~---~~~~~--~~~--~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
. ...+. ... .+......-+.....++++++..+ .+..++.+...++--.+++..+|
T Consensus 80 KAeaAa~~L~eLNP~V~V~~i~~rld~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~ 142 (287)
T PTZ00245 80 RGARALGALQRLNPHVSVYDAVTKLDGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVT 142 (287)
T ss_pred HHHHHHHHHHHHCCCcEEEEcccccCCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEe
Confidence 1 11110 111 222221111223456777777422 45566667666777789999999
Q ss_pred CchHHHH
Q psy11160 158 VPVRAAE 164 (598)
Q Consensus 158 v~~~~~~ 164 (598)
..+-+.-
T Consensus 143 ~g~~~~~ 149 (287)
T PTZ00245 143 CGPTVLA 149 (287)
T ss_pred cchhhhh
Confidence 9886653
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.21 Score=54.82 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=31.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
+++|.|||.|.+|+..|..|++ .|++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr---------------------------~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAK---------------------------RGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEEccCc
Confidence 3589999999999999999999 8999999996543
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.72 Score=48.18 Aligned_cols=93 Identities=11% Similarity=0.130 Sum_probs=61.7
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAI 475 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adal 475 (598)
+|+|+|+ ......+++.|.+.|++|.+||.....+.+.+ . +.....++.++++.+|++
T Consensus 2 ~Ig~IGl----------G~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~--------~----g~~~~~s~~~~~~~advV 59 (292)
T PRK15059 2 KLGFIGL----------GIMGTPMAINLARAGHQLHVTTIGPVADELLS--------L----GAVSVETARQVTEASDII 59 (292)
T ss_pred eEEEEcc----------CHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHH--------c----CCeecCCHHHHHhcCCEE
Confidence 6899887 35678899999999999999986432222211 1 224567888999999999
Q ss_pred EEEeeccc-hhhc--cHHHHHhccCCCcEEEecCCCCC
Q psy11160 476 VVCTEWDE-FVTL--DYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 476 ii~t~~~~-f~~l--d~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+++..++. .++. ....+...+.+..+|+|...+-.
T Consensus 60 i~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p 97 (292)
T PRK15059 60 FIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISP 97 (292)
T ss_pred EEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCH
Confidence 99998863 1211 11122333344458999887754
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.32 Score=39.30 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=25.9
Q ss_pred EECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 10 CIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 10 viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|||.|.-|+..|..|++ .|++|++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~---------------------------~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK---------------------------AGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHH---------------------------TTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHH---------------------------CCCcEEEEecCc
Confidence 79999999999999999 799999999863
|
... |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.2 Score=54.32 Aligned_cols=34 Identities=12% Similarity=0.367 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.+|+|||+|..|+.+|..|++ .|++|+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKD---------------------------SGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhc---------------------------CCCEEEEEecCCc
Confidence 579999999999999999999 7899999988754
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.52 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=20.7
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++|+|.|+|.||..+|..|.+
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~ 44 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAE 44 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 3699999999999999999999
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.23 Score=53.02 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=29.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..|+|||.|.+|+++|..|++ .|++|+++|++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~---------------------------~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLAR---------------------------RGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeccc
Confidence 469999999999999999999 688888888753
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.76 Score=47.77 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++++|||- ..||.|+|..|.. .|..|+++..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~---------------------------~~atVtichs--------------------- 189 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLN---------------------------ENATVTIAHS--------------------- 189 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++++.+++||+||.+++.|---.. ..+++|.+|++-++
T Consensus 190 ------------~T~~l~~~~~~ADIvI~AvG~~~~i~~--------------------~~vk~GavVIDvGi 230 (284)
T PRK14170 190 ------------RTKDLPQVAKEADILVVATGLAKFVKK--------------------DYIKPGAIVIDVGM 230 (284)
T ss_pred ------------CCCCHHHHHhhCCEEEEecCCcCccCH--------------------HHcCCCCEEEEccC
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=2.7 Score=46.87 Aligned_cols=112 Identities=11% Similarity=0.022 Sum_probs=65.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-H---HHHHHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-R---IRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~---~~~~~~~~~~~~e~ 81 (598)
.+|+|+|+|.-|.+.|..|.+ .|.+|+++|.++. . ..++.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~---------------------------~g~~v~~~d~~~~~~~~~~~~l~~~------- 54 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRA---------------------------HLPAQALTLFCNAVEAREVGALADA------- 54 (468)
T ss_pred CEEEEEccchhhHHHHHHHHH---------------------------cCCEEEEEcCCCcccchHHHHHhhc-------
Confidence 589999999999999999999 8999999996532 1 1122221
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH----HHH--H--HHHHcC----CC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA----AAR--M--IAEIAT----DN 149 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~----~~~--~--i~~~~~----~~ 149 (598)
..........+.+.++|+||.+-.-|.+ .+.+...++ ++. + +..... ..
T Consensus 55 -----------~~~~~~~~~~~~~~~~d~vV~SpgI~~~--------~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~ 115 (468)
T PRK04690 55 -----------ALLVETEASAQRLAAFDVVVKSPGISPY--------RPEALAAAARGTPFIGGTALWFAEHAARDGVVP 115 (468)
T ss_pred -----------CEEEeCCCChHHccCCCEEEECCCCCCC--------CHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCC
Confidence 1111122223456789998888544432 122222211 000 1 111121 23
Q ss_pred cEEEEecCCchHHHHHHHHHH
Q psy11160 150 KIVVEKSTVPVRAAESIMNVL 170 (598)
Q Consensus 150 ~ivv~~STv~~~~~~~~~~~l 170 (598)
.+|-+..|.--.||..+...+
T Consensus 116 ~~IaITGTnGKTTTt~ll~~i 136 (468)
T PRK04690 116 GTVCVTGTKGKSTTTALLAHL 136 (468)
T ss_pred CEEEEeCCCCHHHHHHHHHHH
Confidence 688888888777776655543
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.26 Score=59.70 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=31.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..||+|||.|.-|++.|..|++ .||+|++||+..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar---------------------------~G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAV---------------------------EGFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeeCC
Confidence 4789999999999999999999 899999999764
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.22 Score=55.15 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
+.++++|||+|.-|++.|..|.+ .|++|++++++..---.|
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~---------------------------~g~~v~vfEr~~~iGGlW 45 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR---------------------------EGHEVVVFERTDDIGGLW 45 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH---------------------------CCCCceEEEecCCccceE
Confidence 35789999999999999999999 899999999876543333
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.2 Score=54.54 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=20.1
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
+||+|||.|..|+++|..|++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~ 21 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK 21 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 589999999999999999998
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=91.32 E-value=1 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
+||+|+|+ |++|..++..|..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~ 22 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAK 22 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 48999996 9999999998887
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.82 Score=47.53 Aligned_cols=72 Identities=24% Similarity=0.467 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~---------------------------~~ATVt~chs--------------------- 190 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLN---------------------------AKATVTTCHR--------------------- 190 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEEcC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.|+.+.+++||+||.+++.|---.. ..+++|.+||+-++
T Consensus 191 ------------~T~dl~~~~k~ADIvIsAvGkp~~i~~--------------------~~vk~gavVIDvGi 231 (282)
T PRK14180 191 ------------FTTDLKSHTTKADILIVAVGKPNFITA--------------------DMVKEGAVVIDVGI 231 (282)
T ss_pred ------------CCCCHHHHhhhcCEEEEccCCcCcCCH--------------------HHcCCCcEEEEecc
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.8 Score=47.95 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~---------------------------~~atVtv~hs--------------------- 190 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLA---------------------------ANATVTIAHS--------------------- 190 (297)
T ss_pred CEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++++.+++||+||.+++.|---.. ..+++|.+||+-.+
T Consensus 191 ------------~T~~l~~~~~~ADIvIsAvGkp~~i~~--------------------~~ik~gavVIDvGi 231 (297)
T PRK14186 191 ------------RTQDLASITREADILVAAAGRPNLIGA--------------------EMVKPGAVVVDVGI 231 (297)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCcCccCH--------------------HHcCCCCEEEEecc
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.35 Score=51.50 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=30.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
++||.|.|. |++|..++..|.+ .|++|+++|+..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~---------------------------~g~~V~~~d~~~ 49 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLF---------------------------LNQTVIGLDNFS 49 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHH---------------------------CCCEEEEEeCCC
Confidence 479999996 9999999999999 799999999854
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.4 Score=44.30 Aligned_cols=74 Identities=24% Similarity=0.323 Sum_probs=47.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc---eEEEEeCC----HHHHHHHHcCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI---QVTVVDKS----EERIRQWNSNKLPI 78 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~v~~~d~~----~~~~~~~~~~~~~~ 78 (598)
++|.|+|+|-+|..+|..|+. .|. +|+++|++ .++.+.+....
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~---------------------------~G~~~~~i~ivdr~gl~~~~r~~~L~~~~--- 75 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLA---------------------------AGAKPENIVVVDSKGVIYEGREDDLNPDK--- 75 (226)
T ss_pred CEEEEECchHHHHHHHHHHHH---------------------------cCcCcceEEEEeCCCccccccchhhhHHH---
Confidence 689999999999999999998 564 69999998 44432221100
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
.++.+...... ...++.++++++|++|-+++
T Consensus 76 -----~~la~~~~~~~--~~~~l~~~l~~~dvlIgaT~ 106 (226)
T cd05311 76 -----NEIAKETNPEK--TGGTLKEALKGADVFIGVSR 106 (226)
T ss_pred -----HHHHHHhccCc--ccCCHHHHHhcCCEEEeCCC
Confidence 00111100001 11356678899999998875
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.24 Score=53.75 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=30.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.+|+|||.|..|+++|..|++ .|++|+++|+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~---------------------------~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK---------------------------AGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH---------------------------CCCCEEEEECCCC
Confidence 589999999999999999999 7899999998764
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.22 Score=53.62 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
||+ .+|.|||+|..|+.+|..|++ .|++|+++|+.+.
T Consensus 1 ~~~--~dviIvGgG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 37 (392)
T PRK09126 1 MMH--SDIVVVGAGPAGLSFARSLAG---------------------------SGLKVTLIERQPL 37 (392)
T ss_pred CCc--ccEEEECcCHHHHHHHHHHHh---------------------------CCCcEEEEeCCCc
Confidence 554 579999999999999999999 8999999998653
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.83 Score=47.47 Aligned_cols=72 Identities=15% Similarity=0.343 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||- ..||.|+|..|.. .|..|++...
T Consensus 157 k~vvViGrS~iVGkPla~lL~~---------------------------~~atVtichs--------------------- 188 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVN---------------------------HDATVTIAHS--------------------- 188 (282)
T ss_pred CEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEECC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
-|.++++.+++||+||.+++.|---.. +.+++|.+||+-++
T Consensus 189 ------------~T~~l~~~~~~ADIvI~AvG~p~~i~~--------------------~~vk~GavVIDvGi 229 (282)
T PRK14169 189 ------------KTRNLKQLTKEADILVVAVGVPHFIGA--------------------DAVKPGAVVIDVGI 229 (282)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCcCccCH--------------------HHcCCCcEEEEeec
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.24 Score=53.82 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
..|+|||+|.+|+.+|..|++ .|++|+++|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~---------------------------~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG---------------------------SGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh---------------------------CCCEEEEEeCCCC
Confidence 479999999999999999999 7888888888764
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.54 Score=47.89 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN 74 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~ 74 (598)
++..||.|||+|-+|+.++..|+.- |=.+..+|.. .|.+++++|.|.=....+++.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~---------------G~a~~~~G~~-~g~~i~lvD~D~Ve~sNLnRQ 64 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARL---------------HHALKALGHP-GGLAVTVYDDDTVSEANVGRQ 64 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHc---------------cccccccCCC-CCCEEEEECCCEEccchhhcc
Confidence 4567999999999999999999980 0001112221 145899999876655566654
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.25 Score=53.14 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.9
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
.+|+|||.|.+|+++|..|++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc
Confidence 579999999999999999999
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.28 Score=44.86 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=31.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQW 71 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~ 71 (598)
..||+|+|+|.+|+.+|..|+. .|. +++++|.+.=....+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~---------------------------~Gv~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR---------------------------SGVGKITLVDDDIVEPSNL 42 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH---------------------------HTTSEEEEEESSBB-GGGC
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------hCCCceeecCCcceeeccc
Confidence 3689999999999999999999 665 799999764333333
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.1 Score=46.66 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=33.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCH---HHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSE---ERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~---~~~~~~~ 72 (598)
+++.|+|+|-.|.+++..|+. .|.+ |++++|++ ++.+.+.
T Consensus 127 k~vlI~GAGGagrAia~~La~---------------------------~G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCAL---------------------------DGAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEeCCchHHHHHHHHH
Confidence 578999999999999999998 7875 99999996 6666554
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.57 Score=46.20 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+.+.++|.|.|. |.+|..++..|++ .|++|+++++++++.+.+.
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~---------------------------~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAA---------------------------DGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEeCChhHHHHHH
Confidence 4333468999986 9999999999999 8999999999988766543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.1 Score=42.92 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=63.1
Q ss_pred HHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEe
Q psy11160 382 QQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSI 461 (598)
Q Consensus 382 ~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (598)
.+.++....++.+++|+|+|.. +.-...+++.|.++|++|.+.+...
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G---------~~~G~~~a~~L~~~g~~V~v~~r~~------------------------ 78 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRS---------NIVGKPLAALLLNRNATVTVCHSKT------------------------ 78 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCc---------HHHHHHHHHHHhhCCCEEEEEECCc------------------------
Confidence 3455555556789999999962 1135668999999999988877531
Q ss_pred cCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh
Q psy11160 462 LDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH 511 (598)
Q Consensus 462 ~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~ 511 (598)
.+..+.+.+||+||.+|.-+++ ++.+. +++..+|+|.-.=.|.
T Consensus 79 -~~l~~~l~~aDiVIsat~~~~i--i~~~~----~~~~~viIDla~prdv 121 (168)
T cd01080 79 -KNLKEHTKQADIVIVAVGKPGL--VKGDM----VKPGAVVIDVGINRVP 121 (168)
T ss_pred -hhHHHHHhhCCEEEEcCCCCce--ecHHH----ccCCeEEEEccCCCcc
Confidence 2356778899999999998774 44333 2345689998765443
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.92 Score=47.52 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~---------------------------~~ATVtvchs--------------------- 199 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLK---------------------------ADATVTVVHS--------------------- 199 (299)
T ss_pred CEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++++.+++||+||.+++.|..-.. +.+++|.+|++-++
T Consensus 200 ------------~T~nl~~~~~~ADIvv~AvGk~~~i~~--------------------~~vk~gavVIDvGi 240 (299)
T PLN02516 200 ------------RTPDPESIVREADIVIAAAGQAMMIKG--------------------DWIKPGAAVIDVGT 240 (299)
T ss_pred ------------CCCCHHHHHhhCCEEEEcCCCcCccCH--------------------HHcCCCCEEEEeec
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.95 Score=47.06 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||- ..||.|+|..|.. .|..|+++..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~---------------------------~~atVt~chs--------------------- 189 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLN---------------------------AGATVSVCHI--------------------- 189 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++++.+++||++|.+++.|---.. ..+++|.+||+-++
T Consensus 190 ------------~T~nl~~~~~~ADIvIsAvGkp~~i~~--------------------~~vk~GavVIDvGi 230 (282)
T PRK14166 190 ------------KTKDLSLYTRQADLIIVAAGCVNLLRS--------------------DMVKEGVIVVDVGI 230 (282)
T ss_pred ------------CCCCHHHHHhhCCEEEEcCCCcCccCH--------------------HHcCCCCEEEEecc
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.98 Score=46.99 Aligned_cols=72 Identities=15% Similarity=0.304 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|+|||- ..||.|+|..|.. .|..|++.+.
T Consensus 160 k~vvViGrS~iVGkPla~lL~~---------------------------~~atVt~chs--------------------- 191 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTE---------------------------MNATVTLCHS--------------------- 191 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
-|.|+++.+++||+||.+++.|---.. ..+++|.+||+-.+
T Consensus 192 ------------~T~~l~~~~~~ADIvIsAvGk~~~i~~--------------------~~ik~gavVIDvGi 232 (284)
T PRK14177 192 ------------KTQNLPSIVRQADIIVGAVGKPEFIKA--------------------DWISEGAVLLDAGY 232 (284)
T ss_pred ------------CCCCHHHHHhhCCEEEEeCCCcCccCH--------------------HHcCCCCEEEEecC
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.4 Score=46.02 Aligned_cols=41 Identities=10% Similarity=0.288 Sum_probs=34.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCH---HHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSE---ERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~---~~~~~~~~ 73 (598)
.++.|+|+|-.+.+++..|+. .|. +|++++|++ ++.+.+.+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~---------------------------~g~~~i~i~nRt~~~~~ka~~la~ 169 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAI---------------------------EGLKEIKLFNRRDEFFDKALAFAQ 169 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEeCCccHHHHHHHHHH
Confidence 579999999999999999998 564 899999994 57776654
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.29 Score=52.36 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=19.2
Q ss_pred eEEEECCChhHHHHHHHHHH
Q psy11160 7 HICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~ 26 (598)
.|+|||.|.+|+++|..|++
T Consensus 2 dvvIIGaGi~G~s~A~~La~ 21 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK 21 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH
Confidence 58999999999999999999
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.31 Score=52.44 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=29.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC---CceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP---NIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~v~~~d~~ 64 (598)
..+|.|||+|..|+.+|..|++ . |++|+++|+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~---------------------------~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSR---------------------------LSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhh---------------------------cccCCCEEEEEeCC
Confidence 3689999999999999999998 6 8999999984
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.87 Score=40.86 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=55.0
Q ss_pred ceEEEEC----CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIG----AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG----~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
++|+||| -+..|.-+...|.+ .|++|+.++.....+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~---------------------------~G~~v~~Vnp~~~~i------------- 40 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKA---------------------------AGYEVYPVNPKGGEI------------- 40 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHH---------------------------TT-EEEEESTTCSEE-------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHh---------------------------CCCEEEEECCCceEE-------------
Confidence 4799999 68899999999999 899999987643211
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.+.....++.+.-...|++++++|.. .+.++++++.+. ..+.+++..+
T Consensus 41 -----------~G~~~y~sl~e~p~~iDlavv~~~~~---------------~~~~~v~~~~~~-g~~~v~~~~g 88 (116)
T PF13380_consen 41 -----------LGIKCYPSLAEIPEPIDLAVVCVPPD---------------KVPEIVDEAAAL-GVKAVWLQPG 88 (116)
T ss_dssp -----------TTEE-BSSGGGCSST-SEEEE-S-HH---------------HHHHHHHHHHHH-T-SEEEE-TT
T ss_pred -----------CcEEeeccccCCCCCCCEEEEEcCHH---------------HHHHHHHHHHHc-CCCEEEEEcc
Confidence 24566677776347899999997532 456667777655 3556777666
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.27 Score=53.41 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.||+|||+|..|+.+|..|++ +|++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~---------------------------~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA---------------------------RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEecCCc
Confidence 589999999999999999999 7899999988653
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.26 Score=53.41 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=29.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..|+|||+|.+|+++|..|++ .|++|+++|+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~---------------------------~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG---------------------------SGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc---------------------------CCCEEEEEcCCC
Confidence 479999999999999999999 788888888765
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=1 Score=47.04 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~---------------------------~~aTVt~chs--------------------- 192 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLG---------------------------ENCTVTTVHS--------------------- 192 (294)
T ss_pred CEEEEECCCccchHHHHHHHhh---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++.+.+++||+||.+++.|---.. ..++++.+||+-.+
T Consensus 193 ------------~T~~l~~~~~~ADIvVsAvGkp~~i~~--------------------~~ik~gaiVIDVGi 233 (294)
T PRK14187 193 ------------ATRDLADYCSKADILVAAVGIPNFVKY--------------------SWIKKGAIVIDVGI 233 (294)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCcCccCH--------------------HHcCCCCEEEEecc
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.19 Score=55.72 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=38.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH---HHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE---RIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~---~~~~~~~~~~~~~e~~ 82 (598)
|||+|+|+|.-|++.|..|++ +|++|+++..... |+..|..+....+|.|
T Consensus 1 ~rVai~GaG~AgL~~a~~La~---------------------------~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~g 53 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD---------------------------AGYDVTLYEARDRLGGKVASWRDSDGNHVEHG 53 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh---------------------------CCCceEEEeccCccCceeeeeecCCCCeeeee
Confidence 689999999999999999999 9999999987643 4555544333333433
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.38 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.3
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
...|+|||.|.+|+++|..|++
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~ 51 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAK 51 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHH
Confidence 3479999999999999999998
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.58 Score=52.33 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=55.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||+|||.|.-|+..|..|+.+ .|++|++|++.+.---.++.|..|-+ +.+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~--------------------------~g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~ 92 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH--------------------------ERVKVDIFEKLPNPYGLIRYGVAPDH-IHVKN 92 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh--------------------------cCCeEEEEecCCCCccEEEEeCCCCC-ccHHH
Confidence 5899999999999999976641 68999999987665444444544433 33322
Q ss_pred HHhh----hcC------CceEEecC--HHHHhccCcEEEEecCCC
Q psy11160 86 VVKK----TRD------VNLFFSTD--IKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 86 ~~~~----~~~------~~~~~~~~--~~~~~~~adviii~v~tp 118 (598)
+... ... .+...-.+ .++..+..|.||++++..
T Consensus 93 v~~~f~~~~~~~~v~f~gnv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 93 TYKTFDPVFLSPNYRFFGNVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred HHHHHHHHHhhCCeEEEeeeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 2211 001 23333333 555567889999998764
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.32 Score=53.72 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=36.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceecccc-ccCCCc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR-YVGGPT 45 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~-~~~~~~ 45 (598)
|+|+|||+|..|++.|..|.+..|+.++|+.++. ++||=-
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceE
Confidence 5899999999999999999999999999999994 777643
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.7 Score=47.03 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.1
Q ss_pred ceEEEECC-ChhHHHHHH-HHHH
Q psy11160 6 SHICCIGA-GYVGGPTCS-VIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~-~la~ 26 (598)
++|+|+|+ |++|.-|.. .|.+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~ 24 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEE 24 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhC
Confidence 68999998 999999998 5554
|
|
| >KOG2614|consensus | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.33 Score=52.49 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=30.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+.+|+|+|.|.+|++.|..|++ .|++|.+++.++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r---------------------------~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR---------------------------KGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH---------------------------cCCeEEEEeecc
Confidence 4689999999999999999999 899999999843
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.3 Score=46.44 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=61.2
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhh---hccCC
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYD---TVKNT 472 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---al~~a 472 (598)
+|+|+|+ ......+++.|.+.|.+|.+||......+ .+.. .+ .....++.+ .++.+
T Consensus 2 ~Ig~IGl----------G~mG~~la~~L~~~g~~V~~~dr~~~~~~---~l~~----~g----~~~~~s~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGL----------GRMGANIVRRLAKRGHDCVGYDHDQDAVK---AMKE----DR----TTGVANLRELSQRLSAP 60 (298)
T ss_pred EEEEEcc----------hHHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHH----cC----CcccCCHHHHHhhcCCC
Confidence 6899997 35678899999999999999998543221 1111 11 122344444 34568
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
|++++++.....++. ++.+...+.+..+|+|+.+..
T Consensus 61 dvIi~~vp~~~~~~v-~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 61 RVVWVMVPHGIVDAV-LEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred CEEEEEcCchHHHHH-HHHHHhhCCCCCEEEECCCCC
Confidence 999999998744432 345555555556999998875
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.36 Score=51.42 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=28.5
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.|+|||.|.+|+++|..|++ .|++|+++|..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~---------------------------~G~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR---------------------------RGLSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeCC
Confidence 58999999999999999999 78899999875
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >KOG3124|consensus | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.66 Score=47.16 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=29.1
Q ss_pred HHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 102 KSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 102 ~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.+.++.+|+++++|. |. .+.+++.++......++|++
T Consensus 56 ~~~~~~s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iiv 92 (267)
T KOG3124|consen 56 LEVLQASDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIV 92 (267)
T ss_pred HHHHhhccceeEeec-ch--------------hHHHHhhcCccccccceEEE
Confidence 678999999999983 43 36777778877777888887
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.84 Score=48.45 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=31.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.++|.|.|. |++|..++..|++ .|++|++++++...
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~---------------------------~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLE---------------------------LGAEVYGYSLDPPT 40 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHH---------------------------CCCEEEEEeCCCcc
Confidence 368999985 9999999999999 89999999987654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.33 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.1
Q ss_pred CCceEEEECCChhHHHHHHHHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~ 26 (598)
+..+|+|||.|..|+.+|..|++
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~ 26 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ 26 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh
Confidence 34689999999999999999999
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.33 Score=54.05 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=31.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.++|+|||+|.-|+..|..|.+ .|++|++++++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~---------------------------~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRR---------------------------EGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHh---------------------------cCCeEEEEecCCC
Confidence 4689999999999999999999 7899999998754
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.05 E-value=1.5 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.6
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++|+|+|+|.||..++..|.+
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~ 24 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAE 24 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHH
Confidence 4699999999999999999988
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=3.9 Score=40.91 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=34.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+++.|.|. |.+|..++..|++ .|++|++.++++++.+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~---------------------------~G~~v~~~~r~~~~~~~~~ 48 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELAR---------------------------AGAAVAIADLNQDGANAVA 48 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHH---------------------------CCCeEEEEeCChHHHHHHH
Confidence 56888887 9999999999999 8999999999987766544
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.36 Score=52.27 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.+|.|||+|..|+.+|..|++ .|++|+++|+.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL---------------------------AGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh---------------------------cCCCEEEEEcCCc
Confidence 589999999999999999999 7899999998763
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.31 Score=52.02 Aligned_cols=33 Identities=18% Similarity=0.435 Sum_probs=29.2
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.|+|||+|..|+.+|..|++ .|++|+++|+++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~---------------------------~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR---------------------------SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc---------------------------CCCEEEEEeCCCc
Confidence 38999999999999999999 7888888888754
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.9 Score=45.30 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCeEEEEe-ccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 394 DKHIAILG-FAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 394 ~~~V~ilG-lafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
.++|+|+| +. ..+-.++..|.+.|.+|.+||+-. ..++.+++.++
T Consensus 98 ~~~I~IiGG~G----------lmG~slA~~l~~~G~~V~~~d~~~------------------------~~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKG----------QLGRLFAKMLTLSGYQVRILEQDD------------------------WDRAEDILADA 143 (374)
T ss_pred cceEEEEcCCC----------hhhHHHHHHHHHCCCeEEEeCCCc------------------------chhHHHHHhcC
Confidence 47899998 62 466788999999999999999731 02355678899
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i 508 (598)
|+||++++.....+. +..+.. +.+..+|+|...+
T Consensus 144 DlVilavP~~~~~~~-~~~l~~-l~~~~iv~Dv~Sv 177 (374)
T PRK11199 144 GMVIVSVPIHLTEEV-IARLPP-LPEDCILVDLTSV 177 (374)
T ss_pred CEEEEeCcHHHHHHH-HHHHhC-CCCCcEEEECCCc
Confidence 999999998764332 234444 4555689998654
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=89.94 E-value=1.2 Score=44.85 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.7
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++|+|.|.|.||..+|..|.+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~ 52 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHE 52 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 4789999999999999999999
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.79 Score=46.93 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+.++|.|.|+ |.+|..+|..|++ .|++|++.++++++.+.+..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~---------------------------~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQS---------------------------DGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHH
Confidence 3457888888 9999999999999 89999999999998887764
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.67 Score=49.56 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=18.4
Q ss_pred eEEEEC-CChhHHHHHHHHHH
Q psy11160 7 HICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 7 ~I~viG-~G~vG~~~a~~la~ 26 (598)
||+|+| .||+|..+...|++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~ 21 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEE 21 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHh
Confidence 689999 69999999999988
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.2 Score=54.07 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=32.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
.+|+|||||-+|+.++..|++ .|. +++++|-|.=....+++
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR---------------------------~GVgeI~LVD~D~Ve~SNLnR 218 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAK---------------------------TPVREIHLFDGDDFLQHNAFR 218 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHH---------------------------cCCCEEEEECCCEeccccccc
Confidence 589999999999999999999 553 88898877444444444
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.38 Score=54.00 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
+++|+|||+|.=|+..|..||+ +|++|.+++++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~---------------------------~G~~V~VlE~~ 35 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLAR---------------------------AGLKVTVLEKN 35 (487)
T ss_pred CccEEEECCChhHHHHHHHHHh---------------------------CCCEEEEEEec
Confidence 4789999999999999999999 89999999864
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.37 Score=44.49 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=33.3
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
||.|||+|-+|..+|..|+. .|+ +++++|.+.-....+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~---------------------------~Gv~~i~ivD~d~v~~~nl~r 41 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR---------------------------SGVGKITLIDFDTVELSNLNR 41 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEEcCCCcCcchhhc
Confidence 68999999999999999999 776 79999987655555554
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.3 Score=48.05 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=33.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
.+|.|||+|-+|.+++..|+. .|. +++++|.+.-....+++
T Consensus 42 ~~VliiG~GglG~~v~~~La~---------------------------~Gvg~i~ivD~D~ve~sNL~R 83 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLAS---------------------------AGVGTITLIDDDTVDVSNIHR 83 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------cCCCEEEEEeCCEEccccccc
Confidence 689999999999999999999 664 89999987544444443
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.3 Score=45.95 Aligned_cols=72 Identities=22% Similarity=0.411 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||- ..||.|+|..|.. .|..|+.+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~---------------------------~~AtVt~chs--------------------- 190 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLN---------------------------ENATVTICHS--------------------- 190 (278)
T ss_pred CEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
-|.++.+.+++||+||.+++.|---.. +.+++|.+||+-.+
T Consensus 191 ------------~T~~l~~~~~~ADIvIsAvGkp~~i~~--------------------~~ik~gavVIDvGi 231 (278)
T PRK14172 191 ------------KTKNLKEVCKKADILVVAIGRPKFIDE--------------------EYVKEGAIVIDVGT 231 (278)
T ss_pred ------------CCCCHHHHHhhCCEEEEcCCCcCccCH--------------------HHcCCCcEEEEeec
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=2 Score=44.72 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=36.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
+++.|+|+|-.|.+++..|++ .|. +|++++|+.++.+.+.+
T Consensus 128 k~vlilGaGGaarAi~~aL~~---------------------------~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVT---------------------------HGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999998 664 89999999999988764
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.2 Score=47.37 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~---------------------------~~ATVTicHs--------------------- 246 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQR---------------------------HDATVSTVHA--------------------- 246 (345)
T ss_pred CEEEEECCCccccHHHHHHHHH---------------------------CCCEEEEEcC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++.+.+++||+||.+++-|---.+ ..+++|.+||+-.+
T Consensus 247 ------------~T~nl~~~~~~ADIvIsAvGkp~~v~~--------------------d~vk~GavVIDVGi 287 (345)
T PLN02897 247 ------------FTKDPEQITRKADIVIAAAGIPNLVRG--------------------SWLKPGAVVIDVGT 287 (345)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCcCccCH--------------------HHcCCCCEEEEccc
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=89.58 E-value=6.4 Score=41.50 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=72.5
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcC-CeEEEeCCCCCh-hhhhhhhhcccccccCCCceEecCChhhh
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG-AKLKIYDPKVEP-SQIIQDLKELDPELLDHNAVSILDDPYDT 468 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G-~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 468 (598)
.+.+++|+|+|. ...+..+++.|...| .+|.++++-... .++...+ +.. .....+..++
T Consensus 175 ~l~~~~V~ViGa----------G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-------g~~--~~~~~~~~~~ 235 (311)
T cd05213 175 NLKGKKVLVIGA----------GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-------GGN--AVPLDELLEL 235 (311)
T ss_pred CccCCEEEEECc----------HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-------CCe--EEeHHHHHHH
Confidence 457899999996 246777888888876 579999985432 2232221 211 1112356677
Q ss_pred ccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC--CChhhhhhccceeeeccchhh
Q psy11160 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI--LNHDALLDIGFNVHTVIDLNE 529 (598)
Q Consensus 469 l~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i--~d~~~~~~~G~~y~~v~~iN~ 529 (598)
+..+|++|.+|..+.+.++....+.....++.+++|..+= ++++-.+-.|+.+..+-.+++
T Consensus 236 l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~ 298 (311)
T cd05213 236 LNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEE 298 (311)
T ss_pred HhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHH
Confidence 8899999999999987322222222222246799998852 444433334665555544433
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.3 Score=46.09 Aligned_cols=72 Identities=22% Similarity=0.388 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++++|||- ..||.|+|..|.. .|..|++...
T Consensus 160 K~vvViGrS~iVGkPla~lL~~---------------------------~~ATVtichs--------------------- 191 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLK---------------------------ENCSVTICHS--------------------- 191 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
-|.++.+.+++||+||.+++.|.--.. ..+++|.+||+-++
T Consensus 192 ------------~T~~L~~~~~~ADIvV~AvGkp~~i~~--------------------~~vk~GavVIDvGi 232 (288)
T PRK14171 192 ------------KTHNLSSITSKADIVVAAIGSPLKLTA--------------------EYFNPESIVIDVGI 232 (288)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCCCccCH--------------------HHcCCCCEEEEeec
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.2 Score=49.65 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=56.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC-C-
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP-G- 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~-~- 82 (598)
-.+|+|||.|.-|+..|..|++ .||+|+++++.+.-.-.+.-|+..+..+ .
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~---------------------------~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i 175 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSR---------------------------AGHDVTVFERVALDGGLLLYGIPDFKLPKDI 175 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHh---------------------------CCCeEEEeCCcCCCceeEEecCchhhccchH
Confidence 3689999999999999999999 8999999998765544444443323222 1
Q ss_pred hHHHHhhhcCCceEE--------ecCHHHHhccCcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFF--------STDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~--------~~~~~~~~~~adviii~v~tp~ 119 (598)
++..++.....+.++ .-+.++..++-|.|++++++..
T Consensus 176 ~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 176 LDRRLELLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhhCEEEEeccccC
Confidence 111111111111211 3345667778899999998754
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.2 Score=44.55 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=58.0
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++++++|.|+|=+ +.-..+++..|.++|++|.+.+-. ..|+.+.++
T Consensus 152 ~l~Gk~vvViGrS---------~iVGkPla~lL~~~~aTVtichs~-------------------------T~~l~~~~~ 197 (287)
T PRK14173 152 PLAGKEVVVVGRS---------NIVGKPLAALLLREDATVTLAHSK-------------------------TQDLPAVTR 197 (287)
T ss_pred CCCCCEEEEECCC---------CccHHHHHHHHHHCCCEEEEeCCC-------------------------CCCHHHHHh
Confidence 3579999999942 346788999999999999986542 235667889
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
.||.+|.++..+.|-.-+| .++-.+++|.--
T Consensus 198 ~ADIvIsAvGkp~~i~~~~------vk~GavVIDVGi 228 (287)
T PRK14173 198 RADVLVVAVGRPHLITPEM------VRPGAVVVDVGI 228 (287)
T ss_pred hCCEEEEecCCcCccCHHH------cCCCCEEEEccC
Confidence 9999999999999865443 233458888653
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.41 Score=55.57 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=31.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+..+|+|||.|..|+.+|..|++ .|++|+++++++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r---------------------------~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKK---------------------------KGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh---------------------------cCCeEEEEeccc
Confidence 34689999999999999999999 789999998865
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.39 Score=55.95 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+|+|||.|.+|+++|..|++ .|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~---------------------------~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR---------------------------RGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH---------------------------CCCeEEEEecCC
Confidence 479999999999999999999 788999999863
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 598 | ||||
| 4edf_A | 494 | Dimeric Hugdh, K94e Length = 494 | 1e-156 | ||
| 4edf_A | 494 | Dimeric Hugdh, K94e Length = 494 | 8e-22 | ||
| 3tdk_A | 487 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-152 | ||
| 3tdk_A | 487 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 7e-22 | ||
| 3prj_A | 494 | Role Of Packing Defects In The Evolution Of Alloste | 1e-152 | ||
| 3prj_A | 494 | Role Of Packing Defects In The Evolution Of Alloste | 8e-22 | ||
| 2q3e_A | 467 | Structure Of Human Udp-Glucose Dehydrogenase Comple | 1e-152 | ||
| 2q3e_A | 467 | Structure Of Human Udp-Glucose Dehydrogenase Comple | 7e-22 | ||
| 3khu_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-152 | ||
| 3khu_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 7e-22 | ||
| 3itk_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-152 | ||
| 3itk_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 7e-22 | ||
| 3tf5_A | 493 | Structure Of Udp-Glucose Dehydrogenase V132 Deletio | 1e-150 | ||
| 3tf5_A | 493 | Structure Of Udp-Glucose Dehydrogenase V132 Deletio | 8e-22 | ||
| 2o3j_A | 481 | Structure Of Caenorhabditis Elegans Udp-Glucose Deh | 1e-146 | ||
| 2o3j_A | 481 | Structure Of Caenorhabditis Elegans Udp-Glucose Deh | 8e-22 | ||
| 2y0e_A | 478 | Bcec And The Final Step Of Ugds Reaction Length = 4 | 5e-56 | ||
| 2y0e_A | 478 | Bcec And The Final Step Of Ugds Reaction Length = 4 | 4e-07 | ||
| 2y0c_A | 478 | Bcec Mutation Y10s Length = 478 | 4e-55 | ||
| 2y0c_A | 478 | Bcec Mutation Y10s Length = 478 | 4e-07 | ||
| 2y0d_A | 478 | Bcec Mutation Y10k Length = 478 | 4e-55 | ||
| 2y0d_A | 478 | Bcec Mutation Y10k Length = 478 | 4e-07 | ||
| 4a7p_A | 446 | Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase | 7e-51 | ||
| 4a7p_A | 446 | Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase | 4e-07 | ||
| 3vtf_A | 444 | Structure Of A Udp-Glucose Dehydrogenase From The H | 5e-47 | ||
| 3vtf_A | 444 | Structure Of A Udp-Glucose Dehydrogenase From The H | 2e-09 | ||
| 3gg2_A | 450 | Crystal Structure Of Udp-Glucose 6-Dehydrogenase Fr | 1e-44 | ||
| 3gg2_A | 450 | Crystal Structure Of Udp-Glucose 6-Dehydrogenase Fr | 9e-06 | ||
| 1mv8_A | 436 | 1.55 A Crystal Structure Of A Ternary Complex Of Gd | 8e-21 | ||
| 1mfz_A | 436 | Partially Refined 2.8 A Crystal Structure Of Gdp-Ma | 8e-20 | ||
| 3g79_A | 478 | Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuro | 7e-17 | ||
| 3phl_A | 424 | The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 4 | 1e-16 | ||
| 3pid_A | 432 | The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-T | 1e-16 | ||
| 1dli_A | 402 | The First Structure Of Udp-Glucose Dehydrogenase (U | 7e-14 | ||
| 1dlj_A | 402 | The First Structure Of Udp-Glucose Dehydrogenase (U | 1e-12 | ||
| 3ojl_A | 431 | Native Structure Of The Udp-N-Acetyl-Mannosamine De | 2e-12 |
| >pdb|4EDF|A Chain A, Dimeric Hugdh, K94e Length = 494 | Back alignment and structure |
|
| >pdb|4EDF|A Chain A, Dimeric Hugdh, K94e Length = 494 | Back alignment and structure |
|
| >pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Length = 487 | Back alignment and structure |
|
| >pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Length = 487 | Back alignment and structure |
|
| >pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And Induced Fit In Human Udp-Glucose Dehydrogenase. Length = 494 | Back alignment and structure |
|
| >pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And Induced Fit In Human Udp-Glucose Dehydrogenase. Length = 494 | Back alignment and structure |
|
| >pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed With Nadh And Udp-Glucose Length = 467 | Back alignment and structure |
|
| >pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed With Nadh And Udp-Glucose Length = 467 | Back alignment and structure |
|
| >pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Glu161gln, In Complex With Thiohemiacetal Intermediate Length = 467 | Back alignment and structure |
|
| >pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Glu161gln, In Complex With Thiohemiacetal Intermediate Length = 467 | Back alignment and structure |
|
| >pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Thr131ala, Apo Form. Length = 467 | Back alignment and structure |
|
| >pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Thr131ala, Apo Form. Length = 467 | Back alignment and structure |
|
| >pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion Length = 493 | Back alignment and structure |
|
| >pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion Length = 493 | Back alignment and structure |
|
| >pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose Dehydrogenase Length = 481 | Back alignment and structure |
|
| >pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose Dehydrogenase Length = 481 | Back alignment and structure |
|
| >pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction Length = 478 | Back alignment and structure |
|
| >pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction Length = 478 | Back alignment and structure |
|
| >pdb|2Y0C|A Chain A, Bcec Mutation Y10s Length = 478 | Back alignment and structure |
|
| >pdb|2Y0C|A Chain A, Bcec Mutation Y10s Length = 478 | Back alignment and structure |
|
| >pdb|2Y0D|A Chain A, Bcec Mutation Y10k Length = 478 | Back alignment and structure |
|
| >pdb|2Y0D|A Chain A, Bcec Mutation Y10k Length = 478 | Back alignment and structure |
|
| >pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From Sphingomonas Elodea Length = 446 | Back alignment and structure |
|
| >pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From Sphingomonas Elodea Length = 446 | Back alignment and structure |
|
| >pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The Hyperthermophilic Archaeon Pyrobaculum Islandicum Length = 444 | Back alignment and structure |
|
| >pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The Hyperthermophilic Archaeon Pyrobaculum Islandicum Length = 444 | Back alignment and structure |
|
| >pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From Porphyromonas Gingivalis Bound To Product Udp-Glucuronate Length = 450 | Back alignment and structure |
|
| >pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From Porphyromonas Gingivalis Bound To Product Udp-Glucuronate Length = 450 | Back alignment and structure |
|
| >pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa Length = 436 | Back alignment and structure |
|
| >pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose Dehydrogenase From P. Aeruginosa Length = 436 | Back alignment and structure |
|
| >pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic Acid Dehydrogenase From Methanosarcina Mazei Go1 Length = 478 | Back alignment and structure |
|
| >pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 424 | Back alignment and structure |
|
| >pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal Six- Histidine Tag Length = 432 | Back alignment and structure |
|
| >pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402 | Back alignment and structure |
|
| >pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402 | Back alignment and structure |
|
| >pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine Dehydrogenase Cap5o From Staphylococcus Aureus Length = 431 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 598 | |||
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 0.0 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 5e-31 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 0.0 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 1e-72 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 6e-31 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 1e-129 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 1e-18 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 1e-124 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 8e-19 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 1e-119 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 3e-16 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 7e-78 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 4e-13 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 9e-71 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 1e-27 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 2e-13 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 5e-68 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 8e-27 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 6e-13 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 8e-41 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-13 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 2e-05 |
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} Length = 481 | Back alignment and structure |
|---|
Score = 669 bits (1728), Expect = 0.0
Identities = 284/539 (52%), Positives = 344/539 (63%), Gaps = 93/539 (17%)
Query: 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV 60
+ +S + C+GAGYVGGPTC++IA KCP+I VTVVD
Sbjct: 5 VFGKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDM---------------------- 42
Query: 61 VDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTK 120
+ +I +WNS+KLPIYEPGLDE+V R NLFFS+DI AI +A LIFISVNTPTK
Sbjct: 43 ---NTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTK 99
Query: 121 TFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 180
+G GKG A DLKYVE+ +R IA+ A KIVVEKSTVPV+AAESI +L+ K N
Sbjct: 100 MYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNE-- 157
Query: 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240
N++FQ+LSN
Sbjct: 158 ---------------------------------------------------NLKFQVLSN 166
Query: 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELS 300
PEFL+EGTAM DL N DR+LIGGE +PEG A+ L +YE+W+PR I+TTNTWSSELS
Sbjct: 167 PEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELS 226
Query: 301 KLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQK 360
KL ANAFLAQRISSINS+SAVCEATGA++SEVA AVG D+RIG+KFLQASVGFGGSCFQK
Sbjct: 227 KLVANAFLAQRISSINSISAVCEATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQK 286
Query: 361 DILNLVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFK 405
D+L+LVY+CE LNLP+VA YWQ + LFNTV+DK IAI GFAFK
Sbjct: 287 DVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFK 346
Query: 406 KNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDP 465
KNTGDTRES AIHV + L+ E AKL +YDPKV+ SQ++ DL + +++ DP
Sbjct: 347 KNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDP 406
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
Y + HAIVV TEWDEFV L+Y +I+ M PA IFDGR IL+ AL +IGF +
Sbjct: 407 YAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAI 465
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} Length = 481 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-31
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
VI++N +Q+ RF++KII+ LFNTV+DK IAI GFAFKKNTGDTRES AIHV + L+
Sbjct: 307 WQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLME 366
Query: 581 EGAKLKIYDPKLM 593
E AKL +YDPK+
Sbjct: 367 EHAKLSVYDPKVQ 379
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A Length = 467 | Back alignment and structure |
|---|
Score = 530 bits (1368), Expect = 0.0
Identities = 229/369 (62%), Positives = 278/369 (75%), Gaps = 19/369 (5%)
Query: 175 KTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQ 234
KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+
Sbjct: 95 KTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLN 154
Query: 235 FQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNT 294
Q+LSNPEFL+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNT
Sbjct: 155 LQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNT 214
Query: 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFG 354
WSSELSKLAANAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFG
Sbjct: 215 WSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFG 274
Query: 355 GSCFQKDILNLVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAI 399
GSCFQKD+LNLVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAI
Sbjct: 275 GSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAI 334
Query: 400 LGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNA- 458
LGFAFKK+TGDTRES +I++ + L+ EGA L IYDPKV QI+ DL D +
Sbjct: 335 LGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSR 394
Query: 459 -VSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALL 515
V+I DPY+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L
Sbjct: 395 LVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQ 454
Query: 516 DIGFNVHTV 524
IGF + T+
Sbjct: 455 TIGFQIETI 463
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A Length = 467 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 1e-72
Identities = 103/180 (57%), Positives = 117/180 (65%), Gaps = 25/180 (13%)
Query: 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV 61
+ I ICCIGAGYVGGPTCSVIA CP I+VTVVD
Sbjct: 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDV----------------------- 38
Query: 62 DKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKT 121
+E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++A L+FISVNTPTKT
Sbjct: 39 --NESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKT 96
Query: 122 FGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 181
+G GKGRAADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q
Sbjct: 97 YGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQ 156
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A Length = 467 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-31
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+
Sbjct: 301 WQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMD 360
Query: 581 EGAKLKIYDPKLM 593
EGA L IYDPK+
Sbjct: 361 EGAHLHIYDPKVP 373
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* Length = 478 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-129
Identities = 153/534 (28%), Positives = 230/534 (43%), Gaps = 102/534 (19%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66
++ IG+G VG T + +A +G V +D +
Sbjct: 10 NLTIIGSGSVGLVTGACLA--------------DIG-------------HDVFCLDVDQA 42
Query: 67 RIRQWNSNKLPIYEPGLDEVVKKTRDVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNG 125
+I N+ +PI+EPGL EV+ + R L FSTDI++A+ + FI+V TP G
Sbjct: 43 KIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-- 100
Query: 126 KGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAA 185
+ADL+YV AAAR I T K++V+KSTVPV AE +
Sbjct: 101 ---SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERV------------------- 138
Query: 186 DLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245
+ + A + F ++SNPEFL
Sbjct: 139 ---------------------------------RAAVAEELAKRGGDQMFSVVSNPEFLK 165
Query: 246 EGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH--ILTTNTWSSELSKLA 303
EG A+ D DRI+IG ++ G A E + +Y + R H L + S+E +K A
Sbjct: 166 EGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFN-RNHERTLYMDVRSAEFTKYA 224
Query: 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDIL 363
ANA LA RIS +N L+ + + GAD+ V + +G D RIG FL A G+GGSCF KD+
Sbjct: 225 ANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVE 284
Query: 364 NLVYICECLNLP--------EV-----ASYWQQLYESLFNTVSDKHIAILGFAFKKNTGD 410
L+ + V ++ ++ + AI G AFK NT D
Sbjct: 285 ALIRTADEHGQSLQILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDD 344
Query: 411 TRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470
RE+P+ + LL GA++ YDP + +L +S +DD +
Sbjct: 345 MREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR 404
Query: 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
+ A+V+ TEW F + D+ + P IFDGR + + + + G H +
Sbjct: 405 DADALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPI 457
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* Length = 478 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-18
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ V +N QK ++KI++ ++ + AI G AFK NT D RE+P+ + LL
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 581 EGAKLKIYDPKLM 593
GA++ YDP
Sbjct: 360 RGARIAAYDPVAQ 372
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Length = 450 | Back alignment and structure |
|---|
Score = 373 bits (961), Expect = e-124
Identities = 145/534 (27%), Positives = 227/534 (42%), Gaps = 118/534 (22%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66
I +G GYVG + + A +G V +D
Sbjct: 4 DIAVVGIGYVGLVSATCFA--------------ELG-------------ANVRCIDTDRN 36
Query: 67 RIRQWNSNKLPIYEPGLDEVVKKTRDVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNG 125
+I Q NS +PIYEPGL++++ + L F T+I+ A+ +A +IFI+V TP G
Sbjct: 37 KIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-- 94
Query: 126 KGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAA 185
+AD+ YV AAR I + ++V KSTVPV + I
Sbjct: 95 ---SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLI------------------- 132
Query: 186 DLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245
+ + + F I SNPEFL
Sbjct: 133 ---------------------------------RKAIQEELDKREVLIDFDIASNPEFLK 159
Query: 246 EGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH--ILTTNTWSSELSKLA 303
EG A+ D DR+++G + A E ++ +Y+ + + +L + S+E++K A
Sbjct: 160 EGNAIDDFMKPDRVVVGVDSD----RARELITSLYKPML-LNNFRVLFMDIASAEMTKYA 214
Query: 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDIL 363
ANA LA RIS +N ++ +CE GADVS V +G DSRIG+KFL G+GGSCF KD+
Sbjct: 215 ANAMLATRISFMNDVANLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVK 274
Query: 364 NLVYICECLNLP--------EV-----ASYWQQLYESLFNTVSDKHIAILGFAFKKNTGD 410
L+ E V + + + V + +AI G +FK T D
Sbjct: 275 ALIRTAEDNGYRMEVLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDD 334
Query: 411 TRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470
RE+P++ + LL G ++++YDP +++ ++ + V D YD V+
Sbjct: 335 MREAPSLVLIEKLLEVGCRVRVYDPVA-----MKEAQKRLG-----DKVEYTTDMYDAVR 384
Query: 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
A+ TEW EF D+ + + M + DGR + + D F + +
Sbjct: 385 GAEALFHVTEWKEFRMPDWSALSQAMAAS-LVIDGRNVY--ELPADSDFTLLNI 435
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Length = 450 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 8e-19
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ V +NE QK+ +K + V + +AI G +FK T D RE+P++ + LL
Sbjct: 290 LEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLE 349
Query: 581 EGAKLKIYDPKLM 593
G ++++YDP M
Sbjct: 350 VGCRVRVYDPVAM 362
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Length = 436 | Back alignment and structure |
|---|
Score = 358 bits (922), Expect = e-119
Identities = 113/522 (21%), Positives = 195/522 (37%), Gaps = 109/522 (20%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66
I G GYVG ++ G +V VD S
Sbjct: 2 RISIFGLGYVGAVCAGCLS--------------ARG-------------HEVIGVDVSST 34
Query: 67 RIRQWNSNKLPIYEPGLDEVVKKTRDVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNG 125
+I N K PI EPGL+ ++++ R L +TD K A+ + + FI V TP+K G+
Sbjct: 35 KIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGD- 93
Query: 126 KGRAADLKYVEAAARMIAEI---ATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQG 182
DL Y+E R I ++ VV +STV +++ L +
Sbjct: 94 ----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDC-------- 141
Query: 183 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242
+ K V F + +NPE
Sbjct: 142 --------------------------------------------SGKKAGVDFGVGTNPE 157
Query: 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKL 302
FL E TA+ D +IG + + L +Y + I+ +E+ K
Sbjct: 158 FLRESTAIKDYDFPPMTVIGELDK----QTGDLLEEIYRE-LDAP-IIRKTVEVAEMIKY 211
Query: 303 AANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIG--AKFLQASVGFGGSCFQK 360
N + A +++ N + + +A G D EV + D ++ +++ FGGSC K
Sbjct: 212 TCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPK 271
Query: 361 DILNLVYICECLNLP-----EVASYWQQLYESLFNTVSD---KHIAILGFAFKKNTGDTR 412
D+ L Y L++ + + F+ ++ + + +LG +FK T D R
Sbjct: 272 DVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLR 331
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472
ESP + + L+ +G +L+I+D VE +++ KE + H + ++ D + V ++
Sbjct: 332 ESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391
Query: 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDAL 514
+V+ + FV L K + D + H
Sbjct: 392 DVLVLGNGDELFVDLVNKT-----PSGKKLVDLVGFMPHTTT 428
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Length = 436 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 3e-16
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ +++ N Q + + I S + + +LG +FK T D RESP + + L+
Sbjct: 290 LGSLMRSNSNQVQKAFDLITS-----HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIG 344
Query: 581 EGAKLKIYDPKLMSR 595
+G +L+I+D +
Sbjct: 345 KGYELRIFDRNVEYA 359
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Length = 478 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 7e-78
Identities = 103/549 (18%), Positives = 179/549 (32%), Gaps = 127/549 (23%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I I +G GYVG P + A +V + S
Sbjct: 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRN---------------------SKSS 56
Query: 65 EERIRQWNSNKLPIY--EPGLDEVVKKTRDV-NLFFSTDIKSAIQKAQLIFISVNTPTKT 121
+I N + P+ EPGL+E++ K + D S I + + +++ TP
Sbjct: 57 GYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDF-SRISELDAVTLAIQTPFAN 115
Query: 122 FGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 181
+ + D + R + + +VV +ST+ E +
Sbjct: 116 PKDLE---PDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMA-------------- 158
Query: 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241
+ ES + K F + P
Sbjct: 159 -------------------------------KQILEEESGL-------KAGEDFALAHAP 180
Query: 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSK 301
E + G + ++ DRI +GG + + +Y + ++ + ++E++K
Sbjct: 181 ERVMVGRLLKNIREHDRI-VGGI-DEA---STKRAVELYSPVLTVGQVIPMSATAAEVTK 235
Query: 302 LAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGL--DSRIGAKFLQASVGFGGSCFQ 359
A N F +I++IN L+ CEA G +V +V V I L G GG C
Sbjct: 236 TAENTFRDLQIAAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLT 295
Query: 360 KDILNLVYICECLNLPEVASYW--------------------QQLYESLFN---TVSDKH 396
KD +L + +L +
Sbjct: 296 KDTYHLERGVKIGRGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSK 355
Query: 397 IAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDH 456
+A+LG+AF K++ D R +P+ L GA + ++DP V ++
Sbjct: 356 VAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVV----------------NY 399
Query: 457 NAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM-MKPAYIFDGRKILNHDALL 515
V I D+ + V+N AIVV + +L + I DGR ++ D +
Sbjct: 400 PGVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVIEPDEFI 459
Query: 516 DIGFNVHTV 524
GF +
Sbjct: 460 GKGFVYKGI 468
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Length = 478 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFN---TVSDKHIAILGFAFKKNTGDTRESPAIHVCRT 577
+N++ +++L + +A+LG+AF K++ D R +P+
Sbjct: 322 YVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDL 381
Query: 578 LLYEGAKLKIYDPKLMS 594
L GA + ++DP +++
Sbjct: 382 CLKAGASVMVHDPYVVN 398
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Length = 402 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 9e-71
Identities = 68/324 (20%), Positives = 125/324 (38%), Gaps = 41/324 (12%)
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
D ++VE + + + + ++ KST+P+ + + + I+ +PEFL
Sbjct: 92 FDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQTDR-------IIFSPEFL 143
Query: 245 SEGTAMTDLFNADRILIGGEE---TPEGYAAIESLSWVYEHWIPRKH-ILTTNTWSSELS 300
E A+ D RI++ EE A + + +L +E
Sbjct: 144 RESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAV 203
Query: 301 KLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQK 360
KL AN +LA R++ N L E+ + + + + D RIG + S G+GG K
Sbjct: 204 KLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPK 263
Query: 361 DILNLVYICECLNLPE------VASYWQQ---LYESLFNTVSD-----KHIAILGFAFKK 406
D L+ N+P+ V+S + + + + N + + K + + K
Sbjct: 264 DTKQLLANYN--NIPQTLIEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKS 321
Query: 407 NTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPY 466
N+ + RES V L + K+ IY+P + E D +++D
Sbjct: 322 NSDNFRESAIKDVIDILKSKDIKIIIYEPMLN-----------KLESEDQ--SVLVNDLE 368
Query: 467 DTVKNTHAIVVCTEWDEFVTLDYK 490
+ K + IV +E + K
Sbjct: 369 NFKKQANIIVTNRYDNELQDVKNK 392
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Length = 402 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 30/167 (17%), Positives = 69/167 (41%), Gaps = 34/167 (20%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I G+GYVG + ++L +VT+VD +
Sbjct: 3 IAVAGSGYVG----LSLG-------------------VL--LSL---QNEVTIVDILPSK 34
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
+ + N+ PI + ++ +K + +++ + D K+A ++A+L+ I+ T N +
Sbjct: 35 VDKINNGLSPIQDEYIEYYLKS-KQLSIKATLDSKAAYKEAELVIIATPTNY----NSRI 89
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANH 174
D ++VE + + + + ++ KST+P+ + + +
Sbjct: 90 NYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQTDR 135
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Length = 402 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVS-DKHIAILGFAFKKNTGDTRESPAIHVCRTLL 579
+ ++ N +K+ +++II+ L S K + + K N+ + RES V L
Sbjct: 280 IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILK 339
Query: 580 YEGAKLKIYDPKLM 593
+ K+ IY+P L
Sbjct: 340 SKDIKIIIYEPMLN 353
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Length = 432 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 5e-68
Identities = 74/316 (23%), Positives = 132/316 (41%), Gaps = 39/316 (12%)
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
+ VEA R + EI N +++ KST+PV I L ++ ++ +PEFL
Sbjct: 128 FNTSTVEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDIKERLGIDN-------VIFSPEFL 179
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH-ILTTNTWSSELSKLA 303
EG A+ D + RI+IG A + E I + L T++ +E KL
Sbjct: 180 REGRALYDNLHPSRIVIGERSA----RAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLF 235
Query: 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDIL 363
AN +LA R++ N L + E+ G + ++ + V LD RIG + S G+GG C KD
Sbjct: 236 ANTYLALRVAYFNELDSYAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTK 295
Query: 364 NLVYICECLNLPE------VASYWQQ---LYESLFNTVSDKHIAILGFAFKKNTGDTRES 414
L+ E ++P V + + + +S+ K + + K + + R S
Sbjct: 296 QLLANYE--SVPNNIIAAIVDANRTRKDFIADSILA-RKPKVVGVYRLIMKSGSDNFRAS 352
Query: 415 PAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474
+ + + +G + IY+P ++ + E + ++ D +
Sbjct: 353 SIQGIMKRIKAKGIPVIIYEPVMQ-----------EDEFFN---SRVVRDLNAFKQEADV 398
Query: 475 IVVCTEWDEFVTLDYK 490
I+ +E + K
Sbjct: 399 IISNRMAEELADVADK 414
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Length = 432 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 8e-27
Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 34/167 (20%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I G GYVG L N +V +D + +
Sbjct: 39 ITISGTGYVG----LSNG------------------------VLIAQNHEVVALDIVQAK 70
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
+ N PI + + E + + + +N +TD A + A + I+ T + K
Sbjct: 71 VDMLNQKISPIVDKEIQEYLAE-KPLNFRATTDKHDAYRNADYVIIATPTDY----DPKT 125
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANH 174
+ VEA R + EI N +++ KST+PV I L ++
Sbjct: 126 NYFNTSTVEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDIKERLGIDN 171
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Length = 432 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 516 DIGFN-VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHV 574
+ N + ++D N +K ++ I++ K + + K + + R S +
Sbjct: 303 SVPNNIIAAIVDANRTRKDFIADSILA-----RKPKVVGVYRLIMKSGSDNFRASSIQGI 357
Query: 575 CRTLLYEGAKLKIYDPKLM 593
+ + +G + IY+P +
Sbjct: 358 MKRIKAKGIPVIIYEPVMQ 376
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* Length = 431 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 8e-41
Identities = 99/533 (18%), Positives = 181/533 (33%), Gaps = 127/533 (23%)
Query: 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65
S + +G GY+G PT + A + V VD ++
Sbjct: 12 SKLTVVGLGYIGLPTSIMFAKH---------------------------GVDVLGVDINQ 44
Query: 66 ERIRQWNSNKLPIYEPGLDEVVKKTRDV-NLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
+ I + + ++ I EPGL EV ++ L ST + + + I+V TP +
Sbjct: 45 QTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTP----EASDVFIIAVPTP---NND 97
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
+ R+ D+ V A I ++ +ST+ + + +
Sbjct: 98 DQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFV----------------- 140
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
K V+E + PE +
Sbjct: 141 --------------------KPVIENLG------------FTIGEDIYLVH----CPERV 164
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
G + +L + +RI IGG T A + + Y ++ + I T+ ++E+SKL
Sbjct: 165 LPGKILEELVHNNRI-IGG-VTKACIEAGKRV---YRTFVQGEMI-ETDARTAEMSKLME 218
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
N + I+ N L+ +C +V +V + R+ Q G GG C D
Sbjct: 219 NTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNI--HQPGPGVGGHCLAVDPYF 276
Query: 365 LVYIC-ECLNLPEVA--------SYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESP 415
++ E L + +Y + + +S + + G +K + D RESP
Sbjct: 277 IIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESP 336
Query: 416 AIHVCRTLLYE-GAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474
A + L E ++ YDP VE + D+ VK+
Sbjct: 337 AFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSH-------------------AVKDASL 377
Query: 475 IVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527
+++ ++ EF L MK IFD + ++ + +N + +
Sbjct: 378 VLILSDHSEFKNLSDSHF--DKMKHKVIFDTKNVVKSSFEDVLYYNYGNIFNF 428
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* Length = 431 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 537 EKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE-GAKLKIYDP 590
+ + +S + + G +K + D RESPA + L E ++ YDP
Sbjct: 304 DTTKQII-KALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDP 357
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 9e-13
Identities = 90/614 (14%), Positives = 199/614 (32%), Gaps = 193/614 (31%)
Query: 76 LPIYEPGL--DEVVKKTRDV--NLFFSTDIK------SAIQKAQLIFISVNTPTKTFGNG 125
L ++E + K +D+ ++ +I A+ +F ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-------- 73
Query: 126 KGRAADLKYVEAAAR-----MIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 180
K K+VE R +++ I T+ + + + + + + N + K NV
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS- 132
Query: 181 QGRAADLKYVEAAARMIAEIATDNKIVVE------KSTVPVRAAESIMNVLKANHKTNVQ 234
R L+ + + E+ ++++ K+ V A + V ++K +
Sbjct: 133 --R---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALD----VCL-SYKVQCK 179
Query: 235 --FQI----LSN---PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIE-SLSWVYEH-- 282
F+I L N PE + E + L +I + + I+ + +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLE--MLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 283 --WIPRKH-----ILTTNTWSSELSKLAANAFLAQ-RI-------SSINSLSAVCEATGA 327
+ + +L N +++ NAF +I + LSA AT
Sbjct: 236 RLLKSKPYENCLLVLL-NVQNAKA----WNAFNLSCKILLTTRFKQVTDFLSA---ATTT 287
Query: 328 DVSEVAKAVGLDSR----IGAKFLQASVGFGGSCFQKDI---------LNLVYICECL-N 373
+S ++ L + K+L +D+ L I E + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP--------QDLPREVLTTNPRRLSIIAESIRD 339
Query: 374 LPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIY 433
W+ + T+ + + +L + R+ +++ +L ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVL------EPAEYRK----------MFD--RLSVF 381
Query: 434 DPKVE-PSQIIQ----DLKELDPE----------LLDHNA----VSILD------DPYDT 468
P P+ ++ D+ + D L++ +SI +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 469 VKNTHAIVV-------CTEWDEFVT--LD-YKRIYE---------------GMMKPAYI- 502
H +V + D+ + LD Y Y + + ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 503 --FDGRKILNHD--ALLDIGFNVHTVIDLNEYQK-----TRFSEKIISSL--F------N 545
F +KI HD A G ++T+ L Y+ E++++++ F N
Sbjct: 500 FRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 546 TVSDKHIAILGFAF 559
+ K+ +L A
Sbjct: 559 LICSKYTDLLRIAL 572
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 45/150 (30%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+C G G G T S +A ++V V+ +
Sbjct: 5 VCVCGGGN--------------------------GAHTLSGLAASRDGVEVRVLTLFADE 38
Query: 68 IRQWN----SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFG 123
+W +++L + D + + + D + AI A ++ ++V
Sbjct: 39 AERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVILTVPA------ 92
Query: 124 NGKGRAADLKYVEAAARMIAEIATDNKIVV 153
E + +A D+ ++V
Sbjct: 93 ---------FAHEGYFQAMAPYVQDSALIV 113
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 598 | |||
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 100.0 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 100.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 100.0 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 100.0 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 100.0 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.97 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.97 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.97 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.96 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.96 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.96 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.96 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.95 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.95 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.95 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.94 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.94 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.93 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.93 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.92 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.92 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.92 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.91 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.9 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.89 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.89 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.88 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.88 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.88 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.88 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.88 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.87 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.86 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.86 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.84 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.83 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.82 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.81 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.79 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.78 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.78 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.75 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.75 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.69 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.69 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.69 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.66 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.66 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.65 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.65 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.64 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.57 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.57 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.57 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.56 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.55 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.54 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.53 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.51 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.51 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.49 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.46 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.46 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.45 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.43 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.41 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.4 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.38 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.37 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.36 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.31 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.31 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.29 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.29 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.28 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.25 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.25 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.23 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.18 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.16 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.14 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.12 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.09 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.05 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.02 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.01 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.99 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.99 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.95 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 98.93 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.9 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.9 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.88 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.85 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.82 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.81 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.3 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.78 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.78 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.77 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.77 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.75 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.74 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.74 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.73 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.69 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.69 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.68 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.68 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.67 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.65 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.64 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.6 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.54 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.53 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.53 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.52 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.52 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.52 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.46 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.44 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.44 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.43 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.42 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.4 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.4 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.4 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.4 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.39 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.39 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.39 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.39 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.39 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.37 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.37 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.36 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.36 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.35 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.32 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.32 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.31 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.31 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.3 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.29 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.28 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.28 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.27 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.27 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.24 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.23 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.23 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.22 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.22 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.22 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.2 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.19 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.17 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.16 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.15 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.15 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.15 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.13 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.13 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.13 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.12 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.12 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.1 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.1 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.07 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.06 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.05 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.04 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.03 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.03 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.02 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.02 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.02 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.0 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.0 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.0 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.98 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.97 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.95 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.95 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.95 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.94 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.92 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.91 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.91 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.9 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.89 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.86 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.86 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.84 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.82 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.81 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.8 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.8 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.8 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.77 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.76 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.74 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.71 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.71 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.7 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.69 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.65 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.65 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.64 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.64 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.63 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.63 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.61 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.57 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.57 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 97.55 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.55 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.54 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.53 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.53 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.52 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.52 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.51 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.51 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.47 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.46 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.46 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.44 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.43 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.37 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.35 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.32 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.31 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.3 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.3 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.24 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.23 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.23 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.23 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.21 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.21 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.21 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.2 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.2 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.18 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.17 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.16 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.14 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.14 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.14 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.13 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.13 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.11 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.11 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.09 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.08 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.08 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.03 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.02 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.01 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.97 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.96 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.95 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 96.86 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.85 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.81 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.8 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.72 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.7 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.68 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 96.67 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.67 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.57 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.55 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.55 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.51 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.51 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.51 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 96.45 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.44 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.42 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.42 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.42 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.42 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 96.41 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.39 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.39 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 96.38 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 96.37 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.36 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.34 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.3 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.28 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.27 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.26 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.25 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 96.09 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.08 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.07 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.06 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.01 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 96.0 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.99 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 95.99 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 95.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.92 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 95.92 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 95.91 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 95.87 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 95.85 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.85 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 95.85 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.83 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 95.83 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 95.83 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.81 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 95.8 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 95.79 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.78 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.75 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.75 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.75 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 95.72 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.72 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 95.7 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.66 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.66 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 95.64 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 95.62 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 95.62 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 95.61 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 95.6 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 95.59 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 95.59 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.58 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.58 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.57 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 95.48 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 95.46 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 95.46 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.43 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 95.42 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 95.41 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.4 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 95.39 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.38 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.34 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 95.33 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.32 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 95.32 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 95.32 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 95.31 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.3 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 95.28 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.18 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 95.18 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 95.16 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 95.15 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.1 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 95.1 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 95.08 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 95.08 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.06 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 95.06 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.04 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.01 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.01 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 94.99 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 94.98 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 94.98 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 94.98 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 94.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.97 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 94.96 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.96 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.93 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 94.86 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 94.86 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 94.85 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 94.84 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.83 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 94.81 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 94.79 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 94.76 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 94.7 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 94.69 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 94.62 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.58 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 94.57 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 94.53 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 94.52 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 94.51 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 94.41 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.38 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 94.37 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 94.36 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 94.3 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 94.3 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.28 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 94.27 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 94.26 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 94.26 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 94.26 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.24 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.24 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 94.17 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 94.14 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 94.13 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 94.13 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.04 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 94.03 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 93.92 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 93.92 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 93.89 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.88 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 93.86 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 93.82 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 93.73 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 93.72 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 93.65 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.64 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 93.59 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 93.57 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 93.56 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.52 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 93.52 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.49 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 93.46 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 93.44 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 93.44 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 93.42 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 93.38 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 93.38 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 93.37 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 93.34 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 93.3 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.27 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 93.26 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 93.23 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 93.19 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 93.18 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 93.18 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 93.17 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 93.12 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 93.04 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 93.0 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 92.98 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 92.97 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 92.96 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 92.92 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 92.88 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 92.86 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 92.84 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 92.82 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 92.8 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 92.78 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 92.76 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 92.73 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 92.71 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 92.65 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 92.56 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 92.52 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 92.52 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 92.48 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 92.46 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 92.42 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 92.42 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 92.42 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 92.4 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 92.37 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.35 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 92.35 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 92.35 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 92.34 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 92.33 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 92.31 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 92.31 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 92.31 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 92.3 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 92.22 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 92.16 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 92.07 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 92.05 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 92.0 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 91.96 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 91.94 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 91.92 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 91.9 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 91.88 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 91.88 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 91.87 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 91.78 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 91.76 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 91.71 |
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-83 Score=689.67 Aligned_cols=406 Identities=34% Similarity=0.528 Sum_probs=352.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|.+|+|||+||||+|+|..||+ .||+|+++|+|+++++.||+|..|++||+++
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~---------------------------~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ 73 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFAL---------------------------LGHRVVGYDVNPSIVERLRAGRPHIYEPGLE 73 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------HTCEEEEECSCHHHHHHHHTTCCSSCCTTHH
T ss_pred CCEEEEEccCHHHHHHHHHHHh---------------------------CCCcEEEEECCHHHHHHHHCCCCCCCCCCHH
Confidence 5689999999999999999999 7999999999999999999999999999999
Q ss_pred HHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+++.+.+ .+++++|+|+.+++++||++|||||||.+.+
T Consensus 74 ell~~~~~~g~l~~tt~~~~ai~~ad~~~I~VpTP~~~d----------------------------------------- 112 (444)
T 3vtf_A 74 EALGRALSSGRLSFAESAEEAVAATDATFIAVGTPPAPD----------------------------------------- 112 (444)
T ss_dssp HHHHHHHHTTCEEECSSHHHHHHTSSEEEECCCCCBCTT-----------------------------------------
T ss_pred HHHHHHHHcCCeeEEcCHHHHHhcCCceEEEecCCCCCC-----------------------------------------
Confidence 9998764 5789999999999999999999999997532
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhc---CCceEEEeccccchhhhhHH-HHHhhcccCCceeeEEE
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIAT---DNKIVVEKSTVPVRAAESIM-NVLKANHKTNVQFQILS 239 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~---~~~lvv~eSTvP~gtt~~~~-~~L~~~~~~g~~~~l~~ 239 (598)
+.|||+|+++|+++|+++++ ++.+||+|||||||||++++ +++++. ..|.+|.+++
T Consensus 113 -------------------~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~-~~~~~f~v~~ 172 (444)
T 3vtf_A 113 -------------------GSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEE-AGGVKFSVAS 172 (444)
T ss_dssp -------------------SSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTT-TTTCCCEEEE
T ss_pred -------------------CCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHh-CCCCCceeec
Confidence 35678888888888888886 46788999999999998765 455542 2467899999
Q ss_pred CCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLS 319 (598)
Q Consensus 240 ~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~ 319 (598)
+|||+++|.+++++.+|+||++|+.++ ++.+.++.+|+.+. .++.++++.+||++|+++|+|++++|+|+||++
T Consensus 173 ~PErl~eG~a~~d~~~~~riViG~~~~----~a~~~~~~ly~~~~--~~~~~~~~~~AE~~Kl~eN~~ravnIa~~NEla 246 (444)
T 3vtf_A 173 NPEFLREGSALEDFFKPDRIVIGAGDE----RAASFLLDVYKAVD--APKLVMKPREAELVKYASNVFLALKISFANEVG 246 (444)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEESSH----HHHHHHHHHTTTSC--SCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCccccccccCCcEEEcCCCH----HHHHHHHHHHhccC--CCEEEechhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998653 57888999999886 356678999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh--------HHH----HHHHHHHH
Q psy11160 320 AVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE--------VAS----YWQQLYES 387 (598)
Q Consensus 320 ~la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~--------~~~----~~~~~i~~ 387 (598)
.+|+++|+|++||++++++++|+|++|++||+||||||||||+++|.+.|++.|++. +++ ++.+.+..
T Consensus 247 ~ice~~GiDv~eV~~a~~~d~rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~~~~vv~~l~~ 326 (444)
T 3vtf_A 247 LLAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYMPRYAVQLLEE 326 (444)
T ss_dssp HHHHHTTCCHHHHHHHHHTSTTSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhccCCCCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999862 121 22233555
Q ss_pred HhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhh
Q psy11160 388 LFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYD 467 (598)
Q Consensus 388 ~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (598)
.++.++++||+||||||||||||+||||++.|++.|.++|++|.+|||++.++... .+ + . .+.++.++++
T Consensus 327 ~~~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~-~~-------~-~-~~~~~~~~~~ 396 (444)
T 3vtf_A 327 RLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARA-VL-------G-D-SVTYVEDPQA 396 (444)
T ss_dssp HHTCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHH-HH-------G-G-GSEECSCHHH
T ss_pred HccccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHH-hc-------C-C-CceecCCHHH
Confidence 55678899999999999999999999999999999999999999999998654332 11 1 1 4678899999
Q ss_pred hccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccc
Q psy11160 468 TVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVID 526 (598)
Q Consensus 468 al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~ 526 (598)
+++++|++||+|+|++|+++||. .++|||+||++++++. ..|++++.
T Consensus 397 a~~~aDavvi~t~h~ef~~ld~~--------~~vv~D~Rni~~~~~~----~~y~gigW 443 (444)
T 3vtf_A 397 LLDQVEGVIIATAWPQYEGLDYR--------GKVVVDGRYVKKAREA----KIYEGVAW 443 (444)
T ss_dssp HHHHCSEEEECSCCGGGGGSCCT--------TCEEEESSCCGGGGGS----SEEEESSC
T ss_pred HHhCCCEEEEccCCHHHhCCCcC--------CCEEEECCCCCChhhh----cceeeeec
Confidence 99999999999999999999862 3499999999998654 35666653
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-78 Score=655.94 Aligned_cols=419 Identities=37% Similarity=0.587 Sum_probs=365.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
-+|+|||+||||++||.+|++ .||+|++||+++++++.++++..|++||++++
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~---------------------------~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~ 61 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSD---------------------------FGHEVVCVDKDARKIELLHQNVMPIYEPGLDA 61 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCSTTHHHHTTTCCSSCCTTHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHhcCCCCccCCCHHH
Confidence 489999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++.+.. .+++++|+|+.+++++||+||+|||||.+.. ++.+|++++++++++|++.++++++||++||++|||++
T Consensus 62 ~~~~~~~~g~l~~ttd~~ea~~~aDvvii~Vptp~~~~----~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~ 137 (446)
T 4a7p_A 62 LVASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRRG----DGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGD 137 (446)
T ss_dssp HHHHHHHTTCEEEESCHHHHHTTCSEEEECCCCCBCTT----TCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHH
T ss_pred HHHhhcccCCEEEECCHHHHHhcCCEEEEEcCCCCccc----cCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHH
Confidence 987654 5679999999999999999999999998531 24799999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
++... +++.. .+.+|.++++|||+
T Consensus 138 ~l~~~-------------------------------------------------------l~e~~-~~~d~~v~~~Pe~a 161 (446)
T 4a7p_A 138 EVERI-------------------------------------------------------IAEVA-PNSGAKVVSNPEFL 161 (446)
T ss_dssp HHHHH-------------------------------------------------------HHHHS-TTSCCEEEECCCCC
T ss_pred HHHHH-------------------------------------------------------HHHhC-CCCCceEEeCcccc
Confidence 88652 22211 13578999999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCc--eEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRK--HILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~--~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
++|.+++++.+|++|++|++++ ++.+.++++|+.++... ++++++.++||++|+++|+|++++|+|+||++.+|
T Consensus 162 ~eG~a~~d~~~p~~ivvG~~~~----~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~ 237 (446)
T 4a7p_A 162 REGAAIEDFKRPDRVVVGTEDE----FARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC 237 (446)
T ss_dssp CTTSHHHHHHSCSCEEEECSCH----HHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCCCEEEEeCCcH----HHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 57889999999987532 57789999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh--------HHH----HHHH-HHHHHh
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE--------VAS----YWQQ-LYESLF 389 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~--------~~~----~~~~-~i~~~~ 389 (598)
+++|+|++++++++++++|+|+++++||+||||+|||||+++|.+.|++.|++. +++ ++.+ +.+.+.
T Consensus 238 ~~~GiD~~~v~~~~~~~~rig~~~l~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~~~~~~~~i~~~l~ 317 (446)
T 4a7p_A 238 EQVGADVQEVSRGIGMDNRIGGKFLHAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDARKRAMGRKVIKAMG 317 (446)
T ss_dssp HHTTCCHHHHHHHHHTSTTC---CCCCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHhcCCCCCCccCCCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999861 111 1111 233333
Q ss_pred cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 390 NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 390 ~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
..++++||+||||||||||||+||||++.|++.|.++|++|.+|||++..+ ....+ +.+.++.++++++
T Consensus 318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~-~~~~~----------~~~~~~~~~~~~~ 386 (446)
T 4a7p_A 318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQ-ASKML----------TDVEFVENPYAAA 386 (446)
T ss_dssp SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHH-HGGGC----------SSCCBCSCHHHHH
T ss_pred ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHh-HHHhc----------CCceEecChhHHh
Confidence 357899999999999999999999999999999999999999999999643 22211 1356788999999
Q ss_pred cCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccch
Q psy11160 470 KNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527 (598)
Q Consensus 470 ~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~i 527 (598)
+++|++||+|+|++|+++||+.+.+.|+.| +|||+||+++++++++.||.|+++|+.
T Consensus 387 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~-~i~D~r~~~~~~~~~~~g~~y~~iG~~ 443 (446)
T 4a7p_A 387 DGADALVIVTEWDAFRALDLTRIKNSLKSP-VLVDLRNIYPPAELERAGLQYTGVGKP 443 (446)
T ss_dssp TTBSEEEECSCCTTTTSCCHHHHHTTBSSC-BEECSSCCSCHHHHHHTTCBCCCSSCC
T ss_pred cCCCEEEEeeCCHHhhcCCHHHHHHhcCCC-EEEECCCCCCHHHHHhcCCEEEEecCC
Confidence 999999999999999999999999988876 899999999999999999999999874
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-76 Score=640.23 Aligned_cols=402 Identities=23% Similarity=0.376 Sum_probs=341.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|..|||+||||++||.+|++ +||+|++||+|+++++.|++|..|++||+++
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~---------------------------~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~ 63 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAK---------------------------HGVDVLGVDINQQTIDKLQNGQISIEEPGLQ 63 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHTTCCSSCCTTHH
T ss_pred CCccEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHCCCCCcCCCCHH
Confidence 3689999999999999999999 8999999999999999999999999999999
Q ss_pred HHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+++.+.+ .+++++|+|+ ++||+||+|||||.+.+. .+.+|+++++++.++|++.++++++||++||++|||+
T Consensus 64 ~ll~~~~~~g~l~~ttd~----~~aDvvii~VpTp~~~~~---~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt 136 (431)
T 3ojo_A 64 EVYEEVLSSGKLKVSTTP----EASDVFIIAVPTPNNDDQ---YRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTM 136 (431)
T ss_dssp HHHHHHHHTTCEEEESSC----CCCSEEEECCCCCBCSSS---SCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHH
T ss_pred HHHHhhcccCceEEeCch----hhCCEEEEEeCCCccccc---cCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHH
Confidence 9987754 5789999984 589999999999986431 2478999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh-cccCCceeeEEECCc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA-NHKTNVQFQILSNPE 242 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~-~~~~g~~~~l~~~Pe 242 (598)
+++.. +++++ +++.+.+|.++++||
T Consensus 137 ~~v~~------------------------------------------------------~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 137 DDFVK------------------------------------------------------PVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp HHTHH------------------------------------------------------HHHHTTTCCBTTTEEEEECCC
T ss_pred HHHHH------------------------------------------------------HHHHHcCCCcCCCeEEEECCC
Confidence 88765 22332 233456799999999
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
|+++|.+.+++.+|++|+.|++. ++++.++++|+.++. .+++++++++||++|+++|+|++++|+|+||++.+|
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~~-----~~~~~~~~ly~~~~~-~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~ 236 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVTK-----ACIEAGKRVYRTFVQ-GEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSH-----HHHHHHHHHHTTTCC-SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCCH-----HHHHHHHHHHHHHhC-CcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887643 688999999999985 567789999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh------HH----HHHHHHHHHHhccc
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE------VA----SYWQQLYESLFNTV 392 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~------~~----~~~~~~i~~~~~~~ 392 (598)
+++|+|++++++++++++|+ .+++||+||||||||||+++|.+.|++.| +. ++ +++.+.+...+..+
T Consensus 237 e~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~C~pkD~~~L~~~a~~~~-~li~~~~~iN~~~~~~v~~~~~~~l~~~ 313 (431)
T 3ojo_A 237 NNLNINVLDVIEMANKHPRV--NIHQPGPGVGGHCLAVDPYFIIAKDPENA-KLIQTGREINNSMPAYVVDTTKQIIKAL 313 (431)
T ss_dssp HHTTCCHHHHHHHHTTSTTC--CCCCCCSCCCCCCBCSCC---------CC-HHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred HHcCCCHHHHHHHHccCCCc--ccCCCCCCccccchhhhHHHHHHHHHHHh-HHHHHHHHHHHHhHHHHHHHHHHHhhhc
Confidence 99999999999999999987 57899999999999999999999999988 31 11 11112233334457
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHc-CCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE-GAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~-G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+++||+||||||||||||+||||+++|++.|.++ |++|.+|||++..+ .++.++++++++
T Consensus 314 ~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-------------------~~~~~~~~~~~~ 374 (431)
T 3ojo_A 314 SGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-------------------FVEHDMSHAVKD 374 (431)
T ss_dssp SCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-------------------TBCSTTHHHHTT
T ss_pred CCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-------------------cccCCHHHHHhC
Confidence 8999999999999999999999999999999999 99999999998642 134678999999
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccch
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~i 527 (598)
+|++||+|+|++|+++||+.+ +.|+.| +|||+||+++. ...|+.|.++|+.
T Consensus 375 ad~vvi~t~~~~f~~~d~~~~-~~~~~~-~i~D~r~~~~~---~~~~~~y~~ig~~ 425 (431)
T 3ojo_A 375 ASLVLILSDHSEFKNLSDSHF-DKMKHK-VIFDTKNVVKS---SFEDVLYYNYGNI 425 (431)
T ss_dssp CSEEEECSCCGGGTSCCGGGG-TTCSSC-EEEESSCCCCS---CCSSSEEEETTTG
T ss_pred CCEEEEecCCHHHhccCHHHH-HhCCCC-EEEECCCCCCc---hhcCeEEEeeCch
Confidence 999999999999999999988 667655 99999999975 4589999999976
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-76 Score=645.97 Aligned_cols=420 Identities=25% Similarity=0.356 Sum_probs=363.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-Cc-eEEEEeCCHH----HHHHHHcCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NI-QVTVVDKSEE----RIRQWNSNKLP 77 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~v~~~d~~~~----~~~~~~~~~~~ 77 (598)
++|||+|||+||||++||..|++ . || +|++||++++ +++.+++|..+
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~---------------------------~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~ 69 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFAD---------------------------APCFEKVLGFQRNSKSSGYKIEMLNRGESP 69 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHH---------------------------STTCCEEEEECCCCTTTTTHHHHHTTTCCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHH---------------------------hCCCCeEEEEECChhHhHHHHHHHHhcCCC
Confidence 46899999999999999999999 8 99 9999999999 99999999999
Q ss_pred C--CCCChHHHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 78 I--YEPGLDEVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 78 ~--~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
+ +||++++++.+.. .+++++|++ .+++++||+||+|||||.+.++ .+.+|+++++++.++|++.++++++||+
T Consensus 70 i~~~e~gl~~l~~~~~~~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~---~~~~dl~~v~~~~~~i~~~l~~g~iVV~ 145 (478)
T 3g79_A 70 LKGEEPGLEELIGKVVKAGKFECTPD-FSRISELDAVTLAIQTPFANPK---DLEPDFSALIDGIRNVGKYLKPGMLVVL 145 (478)
T ss_dssp SSCCGGGHHHHHHHHHHTTCEEEESC-GGGGGGCSEEEECCCCCCCSSC---CSSCCCHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ccccCCCHHHHHHhhcccCCeEEeCc-HHHHhcCCEEEEecCCchhccC---CccccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 9 9999999887543 467999999 5689999999999999986543 1138999999999999999999999999
Q ss_pred ecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh--cccCC
Q psy11160 155 KSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA--NHKTN 232 (598)
Q Consensus 155 ~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~--~~~~g 232 (598)
+||++|||+++++. +++++ +++.+
T Consensus 146 ~STv~pgtt~~v~~------------------------------------------------------~ile~~~g~~~~ 171 (478)
T 3g79_A 146 ESTITPGTTEGMAK------------------------------------------------------QILEEESGLKAG 171 (478)
T ss_dssp CSCCCTTTTTTHHH------------------------------------------------------HHHHHHHCCCBT
T ss_pred eCCCChHHHHHHHH------------------------------------------------------HHHHHhcCCCcC
Confidence 99999999877764 23321 22235
Q ss_pred ceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHH
Q psy11160 233 VQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRI 312 (598)
Q Consensus 233 ~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~i 312 (598)
.+|.++++|||+++|.+.+++++|++|+.|+++ ++++.++++|+.+....++++++.++||++|+++|+|++++|
T Consensus 172 ~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~-----~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~I 246 (478)
T 3g79_A 172 EDFALAHAPERVMVGRLLKNIREHDRIVGGIDE-----ASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQI 246 (478)
T ss_dssp TTBEEEECCCCCCTTSHHHHHHHSCEEEEESSH-----HHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEeCCccCCccchhhhhcCCcEEEEeCCH-----HHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999877754 577999999999932357888999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHcCCc--cccccccccCccccccchhhhHHHHHHHHHHcCCh--------hH-----
Q psy11160 313 SSINSLSAVCEATGADVSEVAKAVGLDS--RIGAKFLQASVGFGGSCFQKDILNLVYICECLNLP--------EV----- 377 (598)
Q Consensus 313 a~~nE~~~la~~~gid~~ev~~~l~~~~--ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~--------~~----- 377 (598)
+|+||++.+|+++|+|+++|++++++++ ||++++++||+||||+|||||+++|.+.|++.|++ .+
T Consensus 247 a~~nE~~~l~e~~GiD~~~v~~~~~~~~~~ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~ 326 (478)
T 3g79_A 247 AAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLAR 326 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSCCSSSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCchhhhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHH
Confidence 9999999999999999999999999999 88899999999999999999999999999999954 11
Q ss_pred --HH----HHHH-HHHHHhc---ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhh
Q psy11160 378 --AS----YWQQ-LYESLFN---TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLK 447 (598)
Q Consensus 378 --~~----~~~~-~i~~~~~---~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~ 447 (598)
++ ++.+ +.+.+.+ .++++||+||||||||||||+||||++.|++.|.++|++|.+|||++.. +.
T Consensus 327 ~iN~~~~~~~~~~i~~~l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~--~~---- 400 (478)
T 3g79_A 327 KVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN--YP---- 400 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC--BT----
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc--cc----
Confidence 11 1111 2222222 4689999999999999999999999999999999999999999999862 11
Q ss_pred cccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCC-CcEEEecCCCCChhhhhhccceeeeccc
Q psy11160 448 ELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMK-PAYIFDGRKILNHDALLDIGFNVHTVID 526 (598)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~-~~iI~D~r~i~d~~~~~~~G~~y~~v~~ 526 (598)
.+.++.+++++++++|++||+|+|++|+++||+.+.+.|++ +++|||+||++|++++++.||.|+++|+
T Consensus 401 ----------~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~~~~~~~~~~g~~y~~ig~ 470 (478)
T 3g79_A 401 ----------GVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVIEPDEFIGKGFVYKGIGR 470 (478)
T ss_dssp ----------TBCEESCHHHHHTTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSCSCHHHHHTTTCEEEETTC
T ss_pred ----------CcceecCHHHHHhcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCCCCHHHHHhcCCEEEEecc
Confidence 23467899999999999999999999999999999998882 4599999999999999999999999997
Q ss_pred hhh
Q psy11160 527 LNE 529 (598)
Q Consensus 527 iN~ 529 (598)
...
T Consensus 471 ~~~ 473 (478)
T 3g79_A 471 EGH 473 (478)
T ss_dssp TTT
T ss_pred cCc
Confidence 643
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-74 Score=628.78 Aligned_cols=421 Identities=34% Similarity=0.565 Sum_probs=362.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+||||+++|..|++ .|++|++||+++++++.++++..++++|++++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~---------------------------~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~ 55 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAE---------------------------LGANVRCIDTDRNKIEQLNSGTIPIYEPGLEK 55 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHTCSCCCSTTHHH
T ss_pred CEEEEECcCHHHHHHHHHHHh---------------------------cCCEEEEEECCHHHHHHHHcCCCcccCCCHHH
Confidence 799999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++.+.. .+++++++|+++++++||+||+|||||.+.+ +.+|+++++++++.|.+.++++++||++||++|||++
T Consensus 56 ~l~~~~~~~~l~~t~d~~ea~~~aDvViiaVptp~~~~-----~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~ 130 (450)
T 3gg2_A 56 MIARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGED-----GSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYR 130 (450)
T ss_dssp HHHHHHHTTSEEEESCHHHHGGGCSEEEECCCCCBCTT-----SSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHH
T ss_pred HHHhhcccCcEEEECCHHHHHhcCCEEEEEcCCCcccC-----CCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchH
Confidence 886543 4679999999999999999999999998654 4799999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
++...+. +.... ...+.+|.++++|||+
T Consensus 131 ~l~~~l~---------------------------------------------------~~~~~-~~~~~d~~v~~~Pe~a 158 (450)
T 3gg2_A 131 LIRKAIQ---------------------------------------------------EELDK-REVLIDFDIASNPEFL 158 (450)
T ss_dssp HHHHHHH---------------------------------------------------HHHHH-TTCCCCEEEEECCCCC
T ss_pred HHHHHHH---------------------------------------------------Hhccc-cCcCcceeEEechhhh
Confidence 8765220 00110 1113578999999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC-ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR-KHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~-~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
.+|.+.+++.+|++|++|+.++ ++.+.++++|+.+..+ .+++.++.++||++|+++|++++++++++||++.+|+
T Consensus 159 ~eG~~~~~~~~p~~ivvG~~~~----~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~ 234 (450)
T 3gg2_A 159 KEGNAIDDFMKPDRVVVGVDSD----RARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCE 234 (450)
T ss_dssp CTTSHHHHHHSCSCEEEEESSH----HHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCCCEEEEEcCCH----HHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998653 6889999999998742 3677899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh-H-------HH----HH-HHHHHHHhc
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE-V-------AS----YW-QQLYESLFN 390 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~-------~~----~~-~~~i~~~~~ 390 (598)
++|+|++++++++++++|+++++++||+||||+|||||+++|.+.|+++|++. + ++ ++ +.+.+.+..
T Consensus 235 ~~Gid~~~v~~~~~~~~rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~~~~~~~~~~~~~~~ 314 (450)
T 3gg2_A 235 RVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQKSILFDKFSTYYKG 314 (450)
T ss_dssp HHTCCHHHHHHHHHTSTTTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHTTT
T ss_pred HhCCCHHHHHHHHcCCCCCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999861 1 11 11 112333334
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.++++||+||||||||||||+||||++.|++.|.++|++|.+|||++..+ ....+ + . .+.++.+++++++
T Consensus 315 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~-~~~~~-------~-~-~~~~~~~~~~~~~ 384 (450)
T 3gg2_A 315 NVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKE-AQKRL-------G-D-KVEYTTDMYDAVR 384 (450)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHH-------G-G-GSEECSSHHHHTT
T ss_pred cCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHH-HHHhc-------C-c-cceecCCHHHHhc
Confidence 57899999999999999999999999999999999999999999999643 22222 1 1 3577899999999
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccch
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~i 527 (598)
++|++||+|+|++|+++||+.+.+.|+.| +|||+||+++++ ++.||.|+++|+.
T Consensus 385 ~ad~~vi~t~~~~f~~~~~~~~~~~~~~~-~i~D~r~~~~~~--~~~g~~y~~ig~~ 438 (450)
T 3gg2_A 385 GAEALFHVTEWKEFRMPDWSALSQAMAAS-LVIDGRNVYELP--ADSDFTLLNIGNS 438 (450)
T ss_dssp TCSCEEECSCCGGGSSCCHHHHHHHSSSC-EEEESSCCCCCC------CEEEECC--
T ss_pred CCCEEEEccCCHHHhhcCHHHHHHhcCCC-EEEECCCCCChH--HhCCCEEEEeccc
Confidence 99999999999999999999999988876 899999999988 7899999999863
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-72 Score=616.92 Aligned_cols=443 Identities=63% Similarity=1.019 Sum_probs=375.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+||||+++|..|++ ++.|++|++||+++++++.++++..++++++++
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~-------------------------~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~ 63 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAH-------------------------KCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLD 63 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHH-------------------------HCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHH
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHH
Confidence 4799999999999999999999 223799999999999999999999999999999
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+++.+....++++++++.+++++||+||+|||||.+.++++.++.+|+++++++++.|++.++++++||++||++||+++
T Consensus 64 ~~~~~~~~~~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~ 143 (481)
T 2o3j_A 64 EIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAE 143 (481)
T ss_dssp HHHHHHBTTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHH
T ss_pred HHHHHhhcCCEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHH
Confidence 88876544578999999889999999999999998765544556899999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh--cccCCceeeEEECCc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA--NHKTNVQFQILSNPE 242 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~--~~~~g~~~~l~~~Pe 242 (598)
++... +++ ....+.+|.++++||
T Consensus 144 ~l~~~-------------------------------------------------------l~~~~~~~~~~d~~v~~~Pe 168 (481)
T 2o3j_A 144 SIGCI-------------------------------------------------------LREAQKNNENLKFQVLSNPE 168 (481)
T ss_dssp HHHHH-------------------------------------------------------HHHHTC----CCEEEEECCC
T ss_pred HHHHH-------------------------------------------------------HHHhhCcCcCCceEEEeCcc
Confidence 76642 221 111245688999999
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
|+.+|.+.+++.+|+++++|+.+..+.+++++.++++|+.++...+++++++++||++|+++|++++++++++||+..+|
T Consensus 169 ~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la 248 (481)
T 2o3j_A 169 FLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC 248 (481)
T ss_dssp CCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987554556888999999998732467788999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh----------HHHH----HHH-HHHH
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE----------VASY----WQQ-LYES 387 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~----------~~~~----~~~-~i~~ 387 (598)
+++|+|+++++++++.++|+++.+++||+||||+|++||++++.+.|++.|++. +++. +.+ +++.
T Consensus 249 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N~~~~~~~~~~~~~~ 328 (481)
T 2o3j_A 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAE 328 (481)
T ss_dssp HHHSCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHccCCCCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHhhHHHHHHHHHHh
Confidence 999999999999999999999889999999999999999999999999999862 1111 111 2233
Q ss_pred HhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhh
Q psy11160 388 LFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYD 467 (598)
Q Consensus 388 ~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (598)
+.+.++++||+|||+||||||||+||||+++|++.|.++|++|.+|||++..++...+++.+.+.......+.++.++++
T Consensus 329 l~~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
T 2o3j_A 329 LFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYA 408 (481)
T ss_dssp TTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHH
T ss_pred hccccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHH
Confidence 33347899999999999999999999999999999999999999999999865443322111000000002467789999
Q ss_pred hccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccch
Q psy11160 468 TVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527 (598)
Q Consensus 468 al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~i 527 (598)
+++++|++||+|+|++|+++||+.+.+.|+.|.+|||+||++|++++.+.||.|+++|+.
T Consensus 409 ~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~~~~~~g~~~~~iG~~ 468 (481)
T 2o3j_A 409 AARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTS 468 (481)
T ss_dssp HHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSCSCHHHHHHHTCEEEETTSC
T ss_pred HHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCCCCHHHHHhcCcEEEEecCc
Confidence 999999999999999999999999999999888999999999999999999999999974
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-70 Score=602.59 Aligned_cols=443 Identities=66% Similarity=1.076 Sum_probs=372.7
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
|.++|||+|||+|+||+++|..|++ ++.|++|++||+++++++.++++..++++|
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~-------------------------~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~ 56 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAH-------------------------MCPEIRVTVVDVNESRINAWNSPTLPIYEP 56 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHH-------------------------HCTTSEEEEECSCHHHHHHHTSSSCSSCCT
T ss_pred CCCccEEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEECCHHHHHHHhCCCCCcCCC
Confidence 4456899999999999999999999 112899999999999999999999999999
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
++++++.+....++++++++.+++++||+||+|||+|...++...++.+|++++.++++.|.+.++++++||++||++||
T Consensus 57 ~l~~~~~~~~~~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g 136 (467)
T 2q3e_A 57 GLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVR 136 (467)
T ss_dssp THHHHHHHHBTTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTT
T ss_pred CHHHHHHHhhcCCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCch
Confidence 99888765444568999999889999999999999998643221124689999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+++++.. .+++....+.++.+.++|
T Consensus 137 ~~~~l~~-------------------------------------------------------~l~~~~~~~~d~~V~~~P 161 (467)
T 2q3e_A 137 AAESIRR-------------------------------------------------------IFDANTKPNLNLQVLSNP 161 (467)
T ss_dssp HHHHHHH-------------------------------------------------------HHHHTCCTTCEEEEEECC
T ss_pred HHHHHHH-------------------------------------------------------HHHHhCCCCCCeEEEeCH
Confidence 9877654 232211124578899999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
|+..+|...+++.+|+++++|+......+++.+.++++|+.+....++++++.++||++|+++|++++++++++||+..+
T Consensus 162 e~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l 241 (467)
T 2q3e_A 162 EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL 241 (467)
T ss_dssp CCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984322234788999999999842357788999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHH---------------HHHHH
Q psy11160 322 CEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYW---------------QQLYE 386 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~---------------~~~i~ 386 (598)
|++.|+|++++.+++++++|+++.+++||+||||+||+||++++.+.|++.|++...+.+ +.+++
T Consensus 242 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 321 (467)
T 2q3e_A 242 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIID 321 (467)
T ss_dssp HHHHTCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHcCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999998888999999999999999999999999999987322211 11233
Q ss_pred HHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhccc---c-cccCCCceEec
Q psy11160 387 SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELD---P-ELLDHNAVSIL 462 (598)
Q Consensus 387 ~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 462 (598)
.+.+.++++||+||||||||||||+||||++.|++.|.++|++|.+|||++..+++...+.... + ... +.+.++
T Consensus 322 ~~~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 399 (467)
T 2q3e_A 322 SLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS--RLVTIS 399 (467)
T ss_dssp HTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHH--HHEEEC
T ss_pred HhhcccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhcccccccccccc--Cceeec
Confidence 3344578999999999999999999999999999999999999999999998776544321000 0 000 135677
Q ss_pred CChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh--hhhhhccceeeeccc
Q psy11160 463 DDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH--DALLDIGFNVHTVID 526 (598)
Q Consensus 463 ~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~--~~~~~~G~~y~~v~~ 526 (598)
.+++++++++|++||+|+|++|+++||+.+...|+.|.+|||+||++|+ +++...||.|.++|+
T Consensus 400 ~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~~~~~~~~g~~~~~ig~ 465 (467)
T 2q3e_A 400 KDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465 (467)
T ss_dssp SSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCTTTTCHHHHHHHTCEEEETTS
T ss_pred CCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCcCCchHHHHHhcCcEEEEeCC
Confidence 8999999999999999999999999999999999988779999999998 899999999999985
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-69 Score=595.43 Aligned_cols=435 Identities=34% Similarity=0.533 Sum_probs=366.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.|||+|||+||||+++|..|++ .|++|++||+++++++.++++..++++|+++
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~---------------------------~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~ 60 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLAD---------------------------IGHDVFCLDVDQAKIDILNNGGVPIHEPGLK 60 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHTTCCSSCCTTHH
T ss_pred CceEEEECcCHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHCCCCCcCCCCHH
Confidence 4899999999999999999999 8999999999999999999999999999998
Q ss_pred HHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+++.+.. .+++++++|+++++++||+||+|||||.+.+ +.+|+++++++++.|.+.++++++||.+||++||++
T Consensus 61 ~~l~~~~~~~~l~~ttd~~~a~~~aDvviiaVptp~~~~-----~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~ 135 (478)
T 2y0c_A 61 EVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDED-----GSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTA 135 (478)
T ss_dssp HHHHHHHHTTCEEEECCHHHHHHHCSEEEECCCCCBCTT-----SSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred HHHHHhcccCCEEEECCHHHHhhcCCEEEEEeCCCcccC-----CCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCch
Confidence 8776432 3579999999889999999999999998654 479999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.+...+. +.+..+ ..+.+|.++++|||
T Consensus 136 ~~l~~~l~---------------------------------------------------~~~~~g-~~~~~~~v~~~Pe~ 163 (478)
T 2y0c_A 136 ERVRAAVA---------------------------------------------------EELAKR-GGDQMFSVVSNPEF 163 (478)
T ss_dssp HHHHHHHH---------------------------------------------------HHHHHT-TCCCCEEEEECCCC
T ss_pred HHHHHHHH---------------------------------------------------HHhcCC-CCCccEEEEEChhh
Confidence 88765220 001110 00146889999999
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC-CceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP-RKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~-~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
+.+|.+.+++..|+++++|+.+.....++.+.++++|+.+.. ..++.+++.++||++|+++|++++++++++||+..+|
T Consensus 164 ~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la 243 (478)
T 2y0c_A 164 LKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLA 243 (478)
T ss_dssp CCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986431011467889999999873 2467788999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh-HHH-----------HHHH-HHHHHh
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE-VAS-----------YWQQ-LYESLF 389 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~~~-----------~~~~-~i~~~~ 389 (598)
+++|+|++++.++++.++|+++.++.||+|+||+|++||+.++.+.|++.|++. +.+ ++.+ +.+.+.
T Consensus 244 ~~~Gid~~~v~~~i~~~~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~~~~~~~~~~~~~~ 323 (478)
T 2y0c_A 244 DRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQKRVLADKIVARFG 323 (478)
T ss_dssp HHTTCCHHHHHHHHHTSTTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHhcCCccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 999999999999999999998888899999999999999999999999999862 111 1111 233332
Q ss_pred cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhc---ccccccCCCceEecCChh
Q psy11160 390 NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKE---LDPELLDHNAVSILDDPY 466 (598)
Q Consensus 390 ~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 466 (598)
..++++||+||||||||||||+||||++.|++.|.++|++|.+|||++..+ ....+.. ..++.. + .+.++.+++
T Consensus 324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 400 (478)
T 2y0c_A 324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEE-ARRVIALDLADHPSWL-E-RLSFVDDEA 400 (478)
T ss_dssp SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHH-HHHHHHHHTTTCHHHH-T-TEEECSSHH
T ss_pred ccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHH-HHHhhccccccccccc-c-ceeecCCHH
Confidence 357899999999999999999999999999999999999999999998543 2222200 000000 1 357788999
Q ss_pred hhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccch
Q psy11160 467 DTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527 (598)
Q Consensus 467 ~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~i 527 (598)
++++++|++||+|+|++|+++||+.+.+.|+.+ +|||+||+++++.++..||.|.++|+.
T Consensus 401 ~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~-~i~D~r~~~~~~~~~~~g~~y~~ig~~ 460 (478)
T 2y0c_A 401 QAARDADALVIVTEWKIFKSPDFVALGRLWKTP-VIFDGRNLYEPETMSEQGIEYHPIGRP 460 (478)
T ss_dssp HHTTTCSEEEECSCCGGGGSCCHHHHHTTCSSC-EEEESSCCSCHHHHHHTTCEEECSSSC
T ss_pred HHHhCCCEEEEecCChHhhccCHHHHHhhcCCC-EEEECCCCCCHHHHHhcCCEEEEECcc
Confidence 999999999999999999999999999888775 999999999999999999999999975
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-66 Score=562.22 Aligned_cols=378 Identities=24% Similarity=0.373 Sum_probs=308.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+||||+++|..|++ |++|++||+++++++.++++..|++||+++
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~----------------------------G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~ 87 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ----------------------------NHEVVALDIVQAKVDMLNQKISPIVDKEIQ 87 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT----------------------------TSEEEEECSCHHHHHHHHTTCCSSCCHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHc----------------------------CCeEEEEecCHHHhhHHhccCCccccccHH
Confidence 5899999999999999998876 799999999999999999999999999999
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+++.+. ..++++++|+.+++++||+||+|||+|.+.+ .+.+|+++++++++.|++ ++++++||++||++||+++
T Consensus 88 ~ll~~~-~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~----~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~ 161 (432)
T 3pid_A 88 EYLAEK-PLNFRATTDKHDAYRNADYVIIATPTDYDPK----TNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTR 161 (432)
T ss_dssp HHHHHS-CCCEEEESCHHHHHTTCSEEEECCCCEEETT----TTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHH
T ss_pred HHHhhc-cCCeEEEcCHHHHHhCCCEEEEeCCCccccc----cccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHH
Confidence 988652 3479999999999999999999999986532 236899999999999999 8999999999999999997
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
++.. .+.+ ..++++|||+
T Consensus 162 ~l~~-------------------------------------------------------~l~~-------~~v~~sPe~~ 179 (432)
T 3pid_A 162 DIKE-------------------------------------------------------RLGI-------DNVIFSPEFL 179 (432)
T ss_dssp HHHH-------------------------------------------------------HHTC-------CCEEECCCCC
T ss_pred HHHH-------------------------------------------------------HHhh-------ccEeecCccC
Confidence 7754 2222 2578999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhc--ccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEH--WIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~--~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
++|.+.+++++|+||++|+++ ++.+.+.++|.. +....++.++++++||++|+++|+|++++|+|+||++.+|
T Consensus 180 ~~G~A~~~~l~p~rIvvG~~~-----~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la 254 (432)
T 3pid_A 180 REGRALYDNLHPSRIVIGERS-----ARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA 254 (432)
T ss_dssp CTTSHHHHHHSCSCEEESSCS-----HHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhcccCCceEEecCCH-----HHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 466778888876 3322357788999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCCh--h------HHHHHHH-HHHHHhcccC
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLP--E------VASYWQQ-LYESLFNTVS 393 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~--~------~~~~~~~-~i~~~~~~~~ 393 (598)
+++|+|++++++++++++|||..|+.||+||||||||||+++|...+ .|++ . +++...+ +++.+.+ ..
T Consensus 255 e~~GiD~~~v~~~~~~dprig~~~~~pg~G~GG~C~pkD~~~L~~~~--~~~~~~li~~~~~~N~~~~~~v~~~i~~-~~ 331 (432)
T 3pid_A 255 ESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--ESVPNNIIAAIVDANRTRKDFIADSILA-RK 331 (432)
T ss_dssp HHTTCCHHHHHHHHHTSTTTCSSSCCCCSCCCTTTHHHHHHHHHHHT--TTSCCSHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred HHcCCCHHHHHHHHccCCCCCcccCCCCCCCcccchhhhHHHHHHHh--cCCchhHHHHHHHHHHhhHHHHHHHHHh-hc
Confidence 99999999999999999999999999999999999999999997654 4554 1 1111111 2333332 25
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
+++|+||||||||||||+||||++.|++.|+++|++|.+|||++..+.+. +..+..|+++++++||
T Consensus 332 ~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~--------------~~~~~~~~~~~~~~aD 397 (432)
T 3pid_A 332 PKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFF--------------NSRVVRDLNAFKQEAD 397 (432)
T ss_dssp CSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSSEET--------------TEEECCCHHHHHHHCS
T ss_pred CCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChhhcC--------------CceEECCHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999754211 3467899999999999
Q ss_pred EEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChh
Q psy11160 474 AIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHD 512 (598)
Q Consensus 474 alii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~ 512 (598)
+||+.+.+++|+++. + . +++|++|.++
T Consensus 398 ~iv~~~~~~~~~~~~-----~----~---~~tr~~~~~~ 424 (432)
T 3pid_A 398 VIISNRMAEELADVA-----D----K---VYTRDLFGND 424 (432)
T ss_dssp EEECSSCCGGGGGGG-----G----G---EECCCSSTTC
T ss_pred EEEECCCChHHHHHh-----h----c---cCCCCCCCCc
Confidence 999999999886533 1 1 3899999764
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-63 Score=544.01 Aligned_cols=415 Identities=26% Similarity=0.405 Sum_probs=344.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|+||+++|..|++ .|++|++||+++++++.++++..++++|++++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~---------------------------~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~ 53 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSA---------------------------RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEA 53 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHhCCCCCcCCCCHHH
Confidence 589999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCC---CcEEEEecCCchH
Q psy11160 86 VVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATD---NKIVVEKSTVPVR 161 (598)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ivv~~STv~~~ 161 (598)
++.+.. .+++++++++++++++||+||+|||+|...+ +.+|+++++++++.|.+.+++ +++||.+||++||
T Consensus 54 ~~~~~~~~g~l~~t~~~~~~~~~aDvviiaVptp~~~~-----~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g 128 (436)
T 1mv8_A 54 LLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKN-----GDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPG 128 (436)
T ss_dssp HHHHHHHTTCEEEESCHHHHHHTCSEEEECCCCCBCTT-----SSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTT
T ss_pred HHHhhcccCceEEeCCHHHHhccCCEEEEEcCCCcccC-----CCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCC
Confidence 886543 3468999999889999999999999998644 479999999999999999998 9999999999999
Q ss_pred H-HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh--cccCCceeeEE
Q psy11160 162 A-AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA--NHKTNVQFQIL 238 (598)
Q Consensus 162 ~-~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~--~~~~g~~~~l~ 238 (598)
+ .+.+.. .+++ +...+.++.+.
T Consensus 129 ~t~~~l~~-------------------------------------------------------~l~~~~g~~~~~~~~v~ 153 (436)
T 1mv8_A 129 TVNNVVIP-------------------------------------------------------LIEDCSGKKAGVDFGVG 153 (436)
T ss_dssp HHHHTHHH-------------------------------------------------------HHHHHHSCCBTTTBEEE
T ss_pred chHHHHHH-------------------------------------------------------HHHHhcCcccCCcEEEE
Confidence 9 443332 2322 11123467899
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSL 318 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~ 318 (598)
++||+..+|...+++.+|+++++|+.++ ++.+.++++|+.++. ++..++.++||++|+++|++++++++++||+
T Consensus 154 ~~Pe~~~~G~~~~~~~~~~~iv~G~~~~----~~~~~~~~l~~~~~~--~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 154 TNPEFLRESTAIKDYDFPPMTVIGELDK----QTGDLLEEIYRELDA--PIIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEEESSH----HHHHHHHHHHTTSSS--CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcccccccccchhccCCCEEEEEcCCH----HHHHHHHHHHhccCC--CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988532 577889999999873 4556889999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHcCCcccc--ccccccCccccccchhhhHHHHHHHHHHcCChh--------HHHHH-HHHHHH
Q psy11160 319 SAVCEATGADVSEVAKAVGLDSRIG--AKFLQASVGFGGSCFQKDILNLVYICECLNLPE--------VASYW-QQLYES 387 (598)
Q Consensus 319 ~~la~~~gid~~ev~~~l~~~~ri~--~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~--------~~~~~-~~~i~~ 387 (598)
..+|+++|+|++++.++++.++|++ ++++.||+||||+|++||+.++.+.|+++|++. +++.. ..+++.
T Consensus 228 ~~l~~~~Gid~~~v~~~~~~~~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~~~~~~~~ 307 (436)
T 1mv8_A 228 GNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDL 307 (436)
T ss_dssp HHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHhcCCCCCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999999999999887 778899999999999999999999999999851 12111 123444
Q ss_pred HhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhh---hhhhcccccccCCCceEecCC
Q psy11160 388 LFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQII---QDLKELDPELLDHNAVSILDD 464 (598)
Q Consensus 388 ~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 464 (598)
+.+. +++||+|||+||||||||+||||++.|++.|.++|++|.+|||++....+. ..|. ....+|....++.+
T Consensus 308 ~~~~-~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 383 (436)
T 1mv8_A 308 ITSH-DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYI---ESKIPHVSSLLVSD 383 (436)
T ss_dssp HTTS-SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHH---HHTSHHHHTTBCSC
T ss_pred HHHh-cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhc---ccccccccccccCC
Confidence 4433 789999999999999999999999999999999999999999985432100 1110 00000000034678
Q ss_pred hhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccc
Q psy11160 465 PYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVID 526 (598)
Q Consensus 465 ~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~ 526 (598)
++++++++|++||+|+|++|+++| .+.|+.+ +|||+||++++++ ||.|+++|+
T Consensus 384 ~~~~~~~~d~~vi~~~~~~~~~~~----~~~~~~~-~i~D~r~~~~~~~----g~~~~~ig~ 436 (436)
T 1mv8_A 384 LDEVVASSDVLVLGNGDELFVDLV----NKTPSGK-KLVDLVGFMPHTT----TAQAEGICW 436 (436)
T ss_dssp HHHHHHHCSEEEECSCCGGGHHHH----HSCCTTC-EEEESSSCCSSSC----CSSEEESCC
T ss_pred HHHHHhCCcEEEEeCCcHHHHhhh----HHhcCCC-EEEECCCCCCccc----CcEEEEecC
Confidence 999999999999999999999988 3456544 9999999999865 999999874
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-59 Score=502.69 Aligned_cols=385 Identities=22% Similarity=0.319 Sum_probs=314.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|+||+++|..|++ |++|++||+++++++.++++..+++++++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~----------------------------G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~ 52 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL----------------------------QNEVTIVDILPSKVDKINNGLSPIQDEYIEY 52 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT----------------------------TSEEEEECSCHHHHHHHHTTCCSSCCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC----------------------------CCEEEEEECCHHHHHHHHcCCCCcCCCCHHH
Confidence 589999999999999999886 7999999999999999999999999999988
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
++... ..++++++++.+++++||+||+|||+|.+.. .+.+|+++++++++.|.+ ++++++||.+||++||++++
T Consensus 53 ~~~~~-~~~l~~t~~~~~~~~~aDvviiavpt~~~~~----~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~ 126 (402)
T 1dlj_A 53 YLKSK-QLSIKATLDSKAAYKEAELVIIATPTNYNSR----INYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITE 126 (402)
T ss_dssp HHHHS-CCCEEEESCHHHHHHHCSEEEECCCCCEETT----TTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHH
T ss_pred HHHhc-cCcEEEeCCHHHHhcCCCEEEEecCCCcccC----CCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHH
Confidence 87652 3468899999888999999999999986321 246899999999999999 89999999999999999877
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
+.. .+. .+ .++++|||+.
T Consensus 127 l~~-------------------------------------------------------~~~------~~-~v~~~Pe~~~ 144 (402)
T 1dlj_A 127 MRQ-------------------------------------------------------KFQ------TD-RIIFSPEFLR 144 (402)
T ss_dssp HHH-------------------------------------------------------HTT------CS-CEEECCCCCC
T ss_pred HHH-------------------------------------------------------HhC------CC-eEEECCcccc
Confidence 654 111 11 5789999999
Q ss_pred cCchhhhcCCCCEEEEccCCCc--hhHHHHHHHHHHHhc-ccCCc-eEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 246 EGTAMTDLFNADRILIGGEETP--EGYAAIESLSWVYEH-WIPRK-HILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 246 ~G~a~~~~~~p~rv~vGg~~~~--~~~~a~~~l~~ly~~-~~~~~-~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
+|.+.+++.+|+++++|+.+.. ...+..+.+.++|.. +.... +++.++.++||++|+++|++++++++++||+..+
T Consensus 145 ~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l 224 (402)
T 1dlj_A 145 ESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTY 224 (402)
T ss_dssp TTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987521 111345667788864 44212 4678899999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh------HHH----HHHHHHHHHhc-
Q psy11160 322 CEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE------VAS----YWQQLYESLFN- 390 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~------~~~----~~~~~i~~~~~- 390 (598)
|+++|+|+.+++++++.++|++..++.||+||||+|||||+++|.+.|+....+. +++ ++.+.+...+.
T Consensus 225 ~~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~~~~~~l~~~~~~~N~~~~~~~~~~~~~~~~~ 304 (402)
T 1dlj_A 225 AESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLLANYNNIPQTLIEAIVSSNNVRKSYIAKQIINVLKE 304 (402)
T ss_dssp HHHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHhccCCCCCcCCCCCCCccCCccHHhhHHHHHHHhcCCChHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 9999999999999999999999888999999999999999999999886322221 111 11122333332
Q ss_pred -ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 391 -TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 391 -~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
.++++||+||||||||||||+||||++.|++.|.++|++|.+|||++..+. . + . ...++.++++++
T Consensus 305 ~~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~--~-~-------~---~~~~~~~~~~~~ 371 (402)
T 1dlj_A 305 QESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--S-E-------D---QSVLVNDLENFK 371 (402)
T ss_dssp SCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--T-T-------C---CSEECCCHHHHH
T ss_pred cCCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHH--H-H-------c---CCeecCCHHHHH
Confidence 468899999999999999999999999999999999999999999876431 1 0 1 125678899999
Q ss_pred cCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh
Q psy11160 470 KNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH 511 (598)
Q Consensus 470 ~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~ 511 (598)
+++|++|+.|+|++|+++. + -+.+|++|.+
T Consensus 372 ~~~d~~v~~~~h~~~~~~~-----~-------~~~~~~~~~~ 401 (402)
T 1dlj_A 372 KQANIIVTNRYDNELQDVK-----N-------KVYSRDIFGR 401 (402)
T ss_dssp HHCSEEECSSCCGGGGGGG-----G-------GEECCCCSSC
T ss_pred hCCcEEEEecCChHHHHHh-----h-------ccccccccCC
Confidence 9999999999999997743 1 1348888754
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=264.89 Aligned_cols=242 Identities=17% Similarity=0.176 Sum_probs=204.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+||+|||+|.||.+||.+|.+ +||+|++||+++++++.+.+.
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~---------------------------~G~~v~v~dr~~~~~~~l~~~---------- 45 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLK---------------------------AGYLLNVFDLVQSAVDGLVAA---------- 45 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEECSSHHHHHHHHHT----------
T ss_pred cCEEEEeeehHHHHHHHHHHHh---------------------------CCCeEEEEcCCHHHHHHHHHc----------
Confidence 5689999999999999999999 899999999999999988742
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH---HHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR---MIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.+...++.+++++||+||+|+|++. .+++++. .+.+.++++++||++||+.|.
T Consensus 46 ---------Ga~~a~s~~e~~~~~dvv~~~l~~~~--------------~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~ 102 (300)
T 3obb_A 46 ---------GASAARSARDAVQGADVVISMLPASQ--------------HVEGLYLDDDGLLAHIAPGTLVLECSTIAPT 102 (300)
T ss_dssp ---------TCEECSSHHHHHTTCSEEEECCSCHH--------------HHHHHHHSSSSSTTSCCC-CEEEECSCCCHH
T ss_pred ---------CCEEcCCHHHHHhcCCceeecCCchH--------------HHHHHHhchhhhhhcCCCCCEEEECCCCCHH
Confidence 35678899999999999999997652 4666654 477788999999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
++++++.. +++ .| +.++++|
T Consensus 103 ~~~~~a~~-------------------------------------------------------~~~---~G--~~~lDaP 122 (300)
T 3obb_A 103 SARKIHAA-------------------------------------------------------ARE---RG--LAMLDAP 122 (300)
T ss_dssp HHHHHHHH-------------------------------------------------------HHT---TT--CEEEECC
T ss_pred HHHHHHHH-------------------------------------------------------HHH---cC--CEEEecC
Confidence 99888752 333 23 5789999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
+++.+..+..+.+ .+|+||+. +++++++++|+.+++ ..+++|+.++|+.+|+++|.+.+..+..++|...+
T Consensus 123 VsGg~~~A~~G~L---~imvGG~~-----~~~~~~~p~l~~~g~-~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~l 193 (300)
T 3obb_A 123 VSGGTAGAAAGTL---TFMVGGDA-----EALEKARPLFEAMGR-NIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMAL 193 (300)
T ss_dssp EESCHHHHHHTCE---EEEEESCH-----HHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHhCCE---EEEEeCCH-----HHHHHHHHHHHHhCC-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987766777766 48999975 689999999999984 57789999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCcccccc--------------c--cccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 322 CEATGADVSEVAKAVGLDSRIGAK--------------F--LQASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~~~--------------~--l~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+++.|+|++.+.++++.....++. . -++.++|....+.||+++..+.|++.|++
T Consensus 194 a~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~ 263 (300)
T 3obb_A 194 GVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASS 263 (300)
T ss_dssp HHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999876422211 0 13567899999999999999999999987
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=261.83 Aligned_cols=253 Identities=16% Similarity=0.189 Sum_probs=198.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||+|||+|+||.+||.+|++ +||+|++||+++++++.+.+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~------------ 46 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLE---------------------------AGYELVVWNRTASKAEPLTK------------ 46 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEC-------CTTTT------------
T ss_pred CcEEEEecHHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHH------------
Confidence 489999999999999999999 89999999999999876653
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+.+...++.+++++||+||+|+|++. .+++++ ..+.+.++++.++|++||+.|.+++
T Consensus 47 -------~G~~~~~s~~e~~~~~dvvi~~l~~~~--------------~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~ 105 (297)
T 4gbj_A 47 -------LGATVVENAIDAITPGGIVFSVLADDA--------------AVEELFSMELVEKLGKDGVHVSMSTISPETSR 105 (297)
T ss_dssp -------TTCEECSSGGGGCCTTCEEEECCSSHH--------------HHHHHSCHHHHHHHCTTCEEEECSCCCHHHHH
T ss_pred -------cCCeEeCCHHHHHhcCCceeeeccchh--------------hHHHHHHHHHHhhcCCCeEEEECCCCChHHHH
Confidence 235677889999999999999998753 344433 5688889999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
+++. .+.+ .| +.++++|+++
T Consensus 106 ~~~~-------------------------------------------------------~~~~---~g--~~~ldapVsG 125 (297)
T 4gbj_A 106 QLAQ-------------------------------------------------------VHEW---YG--AHYVGAPIFA 125 (297)
T ss_dssp HHHH-------------------------------------------------------HHHH---TT--CEEEECCEEC
T ss_pred HHHH-------------------------------------------------------HHHh---cC--CceecCCcCC
Confidence 8875 2333 23 5789999998
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT-NTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~-~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
.+..+..+.+ .+|+||+. +++++++++|+.++. ..++++ .+++|+.+|+++|.+.+.+++.++|...+|+
T Consensus 126 g~~~a~~g~l---~im~gG~~-----~~~~~~~~~l~~~g~-~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~ 196 (297)
T 4gbj_A 126 RPEAVRAKVG---NICLSGNA-----GAKERIKPIVENFVK-GVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAE 196 (297)
T ss_dssp CHHHHHHTCC---EEEEEECH-----HHHHHHHHHHHTTCS-EEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccccccc---eeecccch-----hHHHHHHHHHHHhhC-CeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766766665 58899975 689999999999984 566777 5799999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCccccccc-------c--ccC-ccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKF-------L--QAS-VGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~-------l--~~~-~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
+.|+|+++++++++.....++.+ + ++. .||....+.||+++..+.|++.|++ .+.+.+.++.+.
T Consensus 197 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~ 271 (297)
T 4gbj_A 197 KNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFIS 271 (297)
T ss_dssp HTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999765433211 1 333 4789999999999999999999987 233334444333
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=259.55 Aligned_cols=255 Identities=18% Similarity=0.195 Sum_probs=203.3
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+.|||+|||+|+||.++|..|++ .||+|++||+++++++.+++.
T Consensus 14 ~~~~I~vIG~G~mG~~~A~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~~--------- 57 (296)
T 3qha_A 14 EQLKLGYIGLGNMGAPMATRMTE---------------------------WPGGVTVYDIRIEAMTPLAEA--------- 57 (296)
T ss_dssp -CCCEEEECCSTTHHHHHHHHTT---------------------------STTCEEEECSSTTTSHHHHHT---------
T ss_pred CCCeEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHC---------
Confidence 35799999999999999999999 899999999999999888752
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+++++++++++++ ||+||+|||++. .++++++.+.+.++++++||+.||++|+++
T Consensus 58 ----------g~~~~~~~~~~~~-aDvvi~~vp~~~--------------~~~~v~~~l~~~l~~g~ivv~~st~~~~~~ 112 (296)
T 3qha_A 58 ----------GATLADSVADVAA-ADLIHITVLDDA--------------QVREVVGELAGHAKPGTVIAIHSTISDTTA 112 (296)
T ss_dssp ----------TCEECSSHHHHTT-SSEEEECCSSHH--------------HHHHHHHHHHTTCCTTCEEEECSCCCHHHH
T ss_pred ----------CCEEcCCHHHHHh-CCEEEEECCChH--------------HHHHHHHHHHHhcCCCCEEEEeCCCCHHHH
Confidence 3567889998888 999999998753 477788999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+++... +.+ .| ..++++|.+
T Consensus 113 ~~~~~~-------------------------------------------------------~~~---~g--~~~~~~pv~ 132 (296)
T 3qha_A 113 VELARD-------------------------------------------------------LKA---RD--IHIVDAPVS 132 (296)
T ss_dssp HHHHHH-------------------------------------------------------HGG---GT--CEEEECCEE
T ss_pred HHHHHH-------------------------------------------------------HHH---cC--CEEEeCCCc
Confidence 877651 222 12 346677877
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
..+..+..+.. .+++||++ ++++.++++|+.++. .++++++.++|+.+|+++|.+.+.+++++||+..+|+
T Consensus 133 g~~~~a~~g~l---~~~~gg~~-----~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~ 203 (296)
T 3qha_A 133 GGAAAAARGEL---ATMVGADR-----EVYERIKPAFKHWAA-VVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAE 203 (296)
T ss_dssp SCHHHHHHTCE---EEEEECCH-----HHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhcCCc---cEEecCCH-----HHHHHHHHHHHHHcC-CeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65443333332 57888864 688999999999974 5667888999999999999999999999999999999
Q ss_pred HcCCCHHHH------HHHHcCCccc-----cccccc-cCccccc-----cchhhhHHHHHHHHHHcCCh-hHHHHHHHHH
Q psy11160 324 ATGADVSEV------AKAVGLDSRI-----GAKFLQ-ASVGFGG-----SCFQKDILNLVYICECLNLP-EVASYWQQLY 385 (598)
Q Consensus 324 ~~gid~~ev------~~~l~~~~ri-----~~~~l~-~~~gfgg-----~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i 385 (598)
+.|+|++++ .+++...... +..++. +.+||++ .|++||++++.+.|++.|++ .+.+.+.+++
T Consensus 204 ~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~ 283 (296)
T 3qha_A 204 AAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGL 283 (296)
T ss_dssp HTTCCHHHHHHHHHHHHHHHCCGGGGCCCSSCSCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HcCCCHHHHhhhcchHHHHhcCcccCHHhhchhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 999999999 9998864321 122222 4688988 99999999999999999987 3333344444
Q ss_pred HHH
Q psy11160 386 ESL 388 (598)
Q Consensus 386 ~~~ 388 (598)
+..
T Consensus 284 ~~~ 286 (296)
T 3qha_A 284 AAG 286 (296)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=257.82 Aligned_cols=254 Identities=16% Similarity=0.185 Sum_probs=205.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+|+||.++|..|++ .|++|++||+++++++.+.+.
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~---------------------------~G~~V~~~dr~~~~~~~l~~~---------- 73 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCE---------------------------AGYALQVWNRTPARAASLAAL---------- 73 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHTT----------
T ss_pred CCEEEEECccHHHHHHHHHHHh---------------------------CCCeEEEEcCCHHHHHHHHHC----------
Confidence 4799999999999999999999 899999999999999988752
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH--HHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR--MIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++..++++.+++++||+||+|||++. .++.++. .+.+.++++++||+.||++|.+
T Consensus 74 ---------g~~~~~~~~e~~~~aDvVi~~vp~~~--------------~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~ 130 (320)
T 4dll_A 74 ---------GATIHEQARAAARDADIVVSMLENGA--------------VVQDVLFAQGVAAAMKPGSLFLDMASITPRE 130 (320)
T ss_dssp ---------TCEEESSHHHHHTTCSEEEECCSSHH--------------HHHHHHTTTCHHHHCCTTCEEEECSCCCHHH
T ss_pred ---------CCEeeCCHHHHHhcCCEEEEECCCHH--------------HHHHHHcchhHHhhCCCCCEEEecCCCCHHH
Confidence 35678899999999999999998653 4666666 7888899999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++... +.+ .| ..++.+|.
T Consensus 131 ~~~~~~~-------------------------------------------------------~~~---~g--~~~~~~pv 150 (320)
T 4dll_A 131 ARDHAAR-------------------------------------------------------LGA---LG--IAHLDTPV 150 (320)
T ss_dssp HHHHHHH-------------------------------------------------------HHH---TT--CEEEECCE
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CEEEeCCC
Confidence 9877641 222 12 35677887
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
+..+..+..+.. .+++||++ ++++.++++|+.+ . .++++++.++|+.+|+++|.+.+..+++++|+..+|
T Consensus 151 ~g~~~~a~~g~l---~i~~gg~~-----~~~~~~~~ll~~~-~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~ 220 (320)
T 4dll_A 151 SGGTVGAEQGTL---VIMAGGKP-----ADFERSLPLLKVF-G-RATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFA 220 (320)
T ss_dssp ECHHHHHHHTCE---EEEEESCH-----HHHHHHHHHHHHH-E-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHhHHhcCCe---eEEeCCCH-----HHHHHHHHHHHhc-C-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765433333332 57889864 6889999999998 4 677788899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHHH
Q psy11160 323 EATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYESL 388 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~~ 388 (598)
++.|+|++++.++++.+...++ .++ ++.+||++.|++||++++.+.+++.|++ .+.+.+.++++.+
T Consensus 221 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 296 (320)
T 4dll_A 221 TKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEG 296 (320)
T ss_dssp HHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 9999999999999997652222 222 4568999999999999999999999987 3444444444443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=255.86 Aligned_cols=255 Identities=13% Similarity=0.139 Sum_probs=205.0
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+|||+|||+|+||.+||..|++ .|++|++||+++++++.+.+.
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~---------------------------~G~~V~~~dr~~~~~~~l~~~--------- 63 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLK---------------------------NGFKVTVWNRTLSKCDELVEH--------- 63 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSGGGGHHHHHT---------
T ss_pred cCCEEEEECccHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHC---------
Confidence 46899999999999999999999 899999999999999888742
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~ 160 (598)
++..++++.+++++||+||+|||+|. .+++++ +.+.+.++++++||+.||++|
T Consensus 64 ----------g~~~~~~~~~~~~~aDvvi~~vp~~~--------------~~~~v~~~~~~l~~~l~~g~~vv~~st~~~ 119 (310)
T 3doj_A 64 ----------GASVCESPAEVIKKCKYTIAMLSDPC--------------AALSVVFDKGGVLEQICEGKGYIDMSTVDA 119 (310)
T ss_dssp ----------TCEECSSHHHHHHHCSEEEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCCH
T ss_pred ----------CCeEcCCHHHHHHhCCEEEEEcCCHH--------------HHHHHHhCchhhhhccCCCCEEEECCCCCH
Confidence 35678899999999999999998763 466666 778888999999999999999
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
++++++... +.+ .| ..++.+
T Consensus 120 ~~~~~~~~~-------------------------------------------------------~~~---~g--~~~v~~ 139 (310)
T 3doj_A 120 ETSLKINEA-------------------------------------------------------ITG---KG--GRFVEG 139 (310)
T ss_dssp HHHHHHHHH-------------------------------------------------------HHH---TT--CEEEEC
T ss_pred HHHHHHHHH-------------------------------------------------------HHH---cC--CEEEeC
Confidence 999777641 222 12 345678
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
|.+..+..+..+.. .+++||+. ++++.++++|+.++. .++++++.+.++.+|+++|.+.+.++++++|+..
T Consensus 140 pv~g~~~~a~~g~l---~i~~gg~~-----~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~ 210 (310)
T 3doj_A 140 PVSGSKKPAEDGQL---IILAAGDK-----ALFEESIPAFDVLGK-RSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLV 210 (310)
T ss_dssp CEECCHHHHHHTCE---EEEEEECH-----HHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHhcCCe---EEEEcCCH-----HHHHHHHHHHHHhCC-CEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765444443333 57888864 688999999999973 5667788999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 321 VCEATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 321 la~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
+|++.|+|++++.++++.+...++ .++ ++.+||++.|+.||++.+.+.|++.|++ .+.+.+.++++.
T Consensus 211 l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 287 (310)
T 3doj_A 211 LADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKK 287 (310)
T ss_dssp HHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 999999999999999987543221 122 4578999999999999999999999986 334444444444
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=245.52 Aligned_cols=253 Identities=17% Similarity=0.160 Sum_probs=203.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|+||.++|..|++ .|++|++||+++++++.+.+.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~~----------- 43 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVK---------------------------AGCSVTIWNRSPEKAEELAAL----------- 43 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSGGGGHHHHHT-----------
T ss_pred CEEEEEeecHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHC-----------
Confidence 699999999999999999999 899999999999999888753
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++..++++.+++++||+||+|||++. .+++++ +.+.+.++++++||+.||+.|.+
T Consensus 44 --------g~~~~~~~~~~~~~aDvvi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~ 101 (287)
T 3pef_A 44 --------GAERAATPCEVVESCPVTFAMLADPA--------------AAEEVCFGKHGVLEGIGEGRGYVDMSTVDPAT 101 (287)
T ss_dssp --------TCEECSSHHHHHHHCSEEEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHH
T ss_pred --------CCeecCCHHHHHhcCCEEEEEcCCHH--------------HHHHHHcCcchHhhcCCCCCEEEeCCCCCHHH
Confidence 35678899999999999999998653 467777 88889999999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++... +.+ .| ..++.+|.
T Consensus 102 ~~~~~~~-------------------------------------------------------~~~---~g--~~~~~~pv 121 (287)
T 3pef_A 102 SQRIGVA-------------------------------------------------------VVA---KG--GRFLEAPV 121 (287)
T ss_dssp HHHHHHH-------------------------------------------------------HHH---TT--CEEEECCE
T ss_pred HHHHHHH-------------------------------------------------------HHH---hC--CEEEECCC
Confidence 9777641 222 12 34566787
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
+..+..+..+.. .+++||+. ++++.++++|+.++. .++++++.+.++.+|+++|.+.+.++++++|+..+|
T Consensus 122 ~g~~~~a~~g~l---~~~~gg~~-----~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~ 192 (287)
T 3pef_A 122 SGSKKPAEDGTL---IILAAGDR-----NLYDEAMPGFEKMGK-KIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALG 192 (287)
T ss_dssp ECCHHHHHHTCE---EEEEEECH-----HHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcCCE---EEEEeCCH-----HHHHHHHHHHHHhCC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544433332 57788864 588999999999973 566678899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 323 EATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
++.|+|++++.++++.+.-.++ .++ ++.++|++.|+.||++.+.+.|++.|++ .+.+.+.++++.
T Consensus 193 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pef_A 193 EKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKG 267 (287)
T ss_dssp HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 9999999999999997542111 122 3578999999999999999999999986 233333344433
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=247.65 Aligned_cols=256 Identities=16% Similarity=0.130 Sum_probs=199.9
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++|||+|||+|+||.++|..|++ .|++|++||+++++++.+.+..
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~~g-------- 50 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLR---------------------------AGLSTWGADLNPQACANLLAEG-------- 50 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHTT--------
T ss_pred CCCeEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEECCHHHHHHHHHcC--------
Confidence 35799999999999999999999 8999999999999999887531
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~ 160 (598)
...+++++.+++++||+||+|||++. .++.++ +.+.+.++++++||+.||++|
T Consensus 51 ----------~~~~~~~~~e~~~~aDvvi~~vp~~~--------------~~~~v~~~~~~l~~~l~~g~ivv~~st~~~ 106 (303)
T 3g0o_A 51 ----------ACGAAASAREFAGVVDALVILVVNAA--------------QVRQVLFGEDGVAHLMKPGSAVMVSSTISS 106 (303)
T ss_dssp ----------CSEEESSSTTTTTTCSEEEECCSSHH--------------HHHHHHC--CCCGGGSCTTCEEEECSCCCH
T ss_pred ----------CccccCCHHHHHhcCCEEEEECCCHH--------------HHHHHHhChhhHHhhCCCCCEEEecCCCCH
Confidence 11236788888999999999998752 356665 677888999999999999999
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
.+++++... +.+ .| ..++..
T Consensus 107 ~~~~~~~~~-------------------------------------------------------~~~---~g--~~~~~~ 126 (303)
T 3g0o_A 107 ADAQEIAAA-------------------------------------------------------LTA---LN--LNMLDA 126 (303)
T ss_dssp HHHHHHHHH-------------------------------------------------------HHT---TT--CEEEEC
T ss_pred HHHHHHHHH-------------------------------------------------------HHH---cC--CeEEeC
Confidence 998777641 222 12 345667
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSINSLS 319 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~nE~~ 319 (598)
|.+..+..+..+.. .+++||+. ++++.++++|+.++. .++++++ .++++.+|+++|++.+.++++++|+.
T Consensus 127 pv~g~~~~a~~g~l---~~~~gg~~-----~~~~~~~~ll~~~g~-~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~ 197 (303)
T 3g0o_A 127 PVSGGAVKAAQGEM---TVMASGSE-----AAFTRLKPVLDAVAS-NVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAM 197 (303)
T ss_dssp CEESCHHHHHTTCE---EEEEECCH-----HHHHHHHHHHHHHEE-EEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhhhhcCCe---EEEeCCCH-----HHHHHHHHHHHHHCC-CEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665443333332 57788854 688999999999974 4566776 89999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 320 AVCEATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 320 ~la~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
.+|++.|+|++++.++++.....++ .++ ++.++|++.|+.||++.+.+.|++.|++ .+.+.+.++++.
T Consensus 198 ~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (303)
T 3g0o_A 198 ALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTS 275 (303)
T ss_dssp HHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 9999999999999999997542221 122 3567899999999999999999999987 233333344433
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-29 Score=272.25 Aligned_cols=260 Identities=19% Similarity=0.293 Sum_probs=183.2
Q ss_pred CCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhccc-CCceeeEEECCcccCcCchhhhcCCCCEEEE
Q psy11160 183 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHK-TNVQFQILSNPEFLSEGTAMTDLFNADRILI 261 (598)
Q Consensus 183 ~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~-~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~v 261 (598)
+.||++||+++++.|+++++++.+||.+||||||||+ ++.+..++ .| ...|..+...++|+++-.
T Consensus 101 ~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~---~v~~~i~e~~g-----------~~~~~d~~v~~~Pe~~~~ 166 (431)
T 3ojo_A 101 RSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMD---DFVKPVIENLG-----------FTIGEDIYLVHCPERVLP 166 (431)
T ss_dssp CBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHH---HTHHHHHHTTT-----------CCBTTTEEEEECCCCCCT
T ss_pred CCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHH---HHHHHHHHHcC-----------CCcCCCeEEEECCCcCCC
Confidence 7899999999999999999999999999999999997 33343222 11 123566788999998755
Q ss_pred ccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcc
Q psy11160 262 GGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 262 Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~r 341 (598)
|. +.+.... ..++..|+ +.+..+.+..+|....- ......++..+|++|+++|..+
T Consensus 167 G~--------A~~~~~~-------p~~Iv~G~--~~~~~~~~~~ly~~~~~-------~~~~~~~~~~AE~~Kl~~N~~~ 222 (431)
T 3ojo_A 167 GK--------ILEELVH-------NNRIIGGV--TKACIEAGKRVYRTFVQ-------GEMIETDARTAEMSKLMENTYR 222 (431)
T ss_dssp TS--------HHHHHHH-------SCEEEEES--SHHHHHHHHHHHTTTCC-------SCEEEEEHHHHHHHHHHHHHHH
T ss_pred cc--------hhhcccC-------CCEEEEeC--CHHHHHHHHHHHHHHhC-------CcEEeCCHHHHHHHHHHHHHHH
Confidence 43 3322221 13454443 23444555544432100 0011245667899999988654
Q ss_pred ccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHH
Q psy11160 342 IGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCR 421 (598)
Q Consensus 342 i~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~ 421 (598)
..+++| +|+++.+|+++|++. .++++.+.. +.||
T Consensus 223 ------a~~Ia~--------~nE~~~l~e~~GiD~-----~~v~~~~~~---~~ri------------------------ 256 (431)
T 3ojo_A 223 ------DVNIAL--------ANELTKICNNLNINV-----LDVIEMANK---HPRV------------------------ 256 (431)
T ss_dssp ------HHHHHH--------HHHHHHHHHHTTCCH-----HHHHHHHTT---STTC------------------------
T ss_pred ------HHHHHH--------HHHHHHHHHHcCCCH-----HHHHHHHcc---CCCc------------------------
Confidence 456788 999999999999983 466666531 1222
Q ss_pred HHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcE
Q psy11160 422 TLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501 (598)
Q Consensus 422 ~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~i 501 (598)
..+.|++ ++||| |++.|++.++..+. + .. . +
T Consensus 257 ---------~~l~pG~--------------G~GG~---C~pkD~~~L~~~a~---------~---~~--~---------l 287 (431)
T 3ojo_A 257 ---------NIHQPGP--------------GVGGH---CLAVDPYFIIAKDP---------E---NA--K---------L 287 (431)
T ss_dssp ---------CCCCCCS--------------CCCCC---CBCSCC---------------------CC--H---------H
T ss_pred ---------ccCCCCC--------------Ccccc---chhhhHHHHHHHHH---------H---Hh--H---------H
Confidence 1234543 37888 99999988766542 0 00 1 1
Q ss_pred EEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhC
Q psy11160 502 IFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581 (598)
Q Consensus 502 I~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~ 581 (598)
.++++++|+.||.++++++.+.+ +.+++++|+||||||||||||+||||++.|++.|.++
T Consensus 288 -------------------i~~~~~iN~~~~~~v~~~~~~~l-~~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~ 347 (431)
T 3ojo_A 288 -------------------IQTGREINNSMPAYVVDTTKQII-KALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQE 347 (431)
T ss_dssp -------------------HHHHHHHHHTHHHHHHHHHHHHH-HHSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHS
T ss_pred -------------------HHHHHHHHHHhHHHHHHHHHHHh-hhcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhh
Confidence 25678999999999999999988 4588999999999999999999999999999999999
Q ss_pred -CCEEEEECCCCCCc
Q psy11160 582 -GAKLKIYDPKLMSR 595 (598)
Q Consensus 582 -g~~v~~~DP~~~~~ 595 (598)
|++|.+|||+++.+
T Consensus 348 ~g~~V~~~DP~~~~~ 362 (431)
T 3ojo_A 348 PDIEVCAYDPHVELD 362 (431)
T ss_dssp TTCEEEEECSSCCCT
T ss_pred cCCEEEEECCCcccc
Confidence 99999999999754
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=244.08 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=201.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+||+|||+|+||.++|..|++ .||+|++||+++++++.+.+.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~~----------- 43 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVR---------------------------AGFDVTVWNRNPAKCAPLVAL----------- 43 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHH---------------------------HTCCEEEECSSGGGGHHHHHH-----------
T ss_pred CeEEEEccCHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHC-----------
Confidence 689999999999999999999 799999999999999887742
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++..++++.+++++||+||+|||++. .+++++ +.+.+.++++++||+.||+.|.+
T Consensus 44 --------g~~~~~~~~~~~~~advvi~~v~~~~--------------~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~ 101 (287)
T 3pdu_A 44 --------GARQASSPAEVCAACDITIAMLADPA--------------AAREVCFGANGVLEGIGGGRGYIDMSTVDDET 101 (287)
T ss_dssp --------TCEECSCHHHHHHHCSEEEECCSSHH--------------HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHH
T ss_pred --------CCeecCCHHHHHHcCCEEEEEcCCHH--------------HHHHHHcCchhhhhcccCCCEEEECCCCCHHH
Confidence 35677899999999999999998752 466666 77888889999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++... +.+ .| ..++.+|.
T Consensus 102 ~~~~~~~-------------------------------------------------------~~~---~g--~~~~~~pv 121 (287)
T 3pdu_A 102 STAIGAA-------------------------------------------------------VTA---RG--GRFLEAPV 121 (287)
T ss_dssp HHHHHHH-------------------------------------------------------HHH---TT--CEEEECCE
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CEEEECCc
Confidence 8777641 222 12 34566777
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
+..+..+..+.. .+++||+. ++++.++++|+.++. .++++++.+.++.+|+++|.+.+..+++++|+..+|
T Consensus 122 ~g~~~~a~~g~l---~~~~gg~~-----~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (287)
T 3pdu_A 122 SGTKKPAEDGTL---IILAAGDQ-----SLFTDAGPAFAALGK-KCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALG 192 (287)
T ss_dssp ECCHHHHHHTCE---EEEEEECH-----HHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcCCE---EEEEeCCH-----HHHHHHHHHHHHhCC-CEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655433333332 47788864 678999999999973 456678899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 323 EATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
++.|+|++++.++++.+...++ .++ ++.+||++.|+.||+..+.+.+++.|++ .+.+.+.++++.
T Consensus 193 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pdu_A 193 RNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKR 267 (287)
T ss_dssp HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 9999999999999987542111 122 3578999999999999999999999986 233333344443
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-28 Score=261.52 Aligned_cols=269 Identities=25% Similarity=0.325 Sum_probs=179.8
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEE
Q psy11160 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILI 261 (598)
Q Consensus 182 ~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~v 261 (598)
.+.|||+|++++++.|+++++++.+||.+||+||||+++ +.+.+.. . ..+..+...++|++.-.
T Consensus 100 ~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~----l~~~l~e-----------~-~~~~d~~v~~~Pe~a~e 163 (446)
T 4a7p_A 100 DGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDE----VERIIAE-----------V-APNSGAKVVSNPEFLRE 163 (446)
T ss_dssp TCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHH----HHHHHHH-----------H-STTSCCEEEECCCCCCT
T ss_pred cCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHH----HHHHHHH-----------h-CCCCCceEEeCcccccc
Confidence 568999999999999999999999999999999999973 3443321 1 11234556667776544
Q ss_pred ccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcc
Q psy11160 262 GGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 262 Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~r 341 (598)
|. +++. +.. .+.+.+|+. ..+..+.+..+|... . -++ .......++..+|+.|+++|..+
T Consensus 164 G~--------a~~d---~~~----p~~ivvG~~-~~~~~~~~~~ly~~~-~--~~~-~~~~~~~d~~~aE~~Kl~~N~~~ 223 (446)
T 4a7p_A 164 GA--------AIED---FKR----PDRVVVGTE-DEFARQVMREIYRPL-S--LNQ-SAPVLFTGRRTSELIKYAANAFL 223 (446)
T ss_dssp TS--------HHHH---HHS----CSCEEEECS-CHHHHHHHHHHHCSC-C--------CEEEECHHHHHHHHHHHHHHH
T ss_pred cc--------hhhh---ccC----CCEEEEeCC-cHHHHHHHHHHHHHH-h--cCC-CeEEEeCCHHHHHHHHHHHHHHH
Confidence 42 2222 211 234555532 122333333333210 0 000 00011235566789999988654
Q ss_pred ccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHH
Q psy11160 342 IGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCR 421 (598)
Q Consensus 342 i~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~ 421 (598)
...++| +|+++.+|+++|++. .++++.+.. +.||+ .
T Consensus 224 ------a~~ia~--------~nE~~~l~~~~GiD~-----~~v~~~~~~---~~rig---~------------------- 259 (446)
T 4a7p_A 224 ------AVKITF--------INEIADLCEQVGADV-----QEVSRGIGM---DNRIG---G------------------- 259 (446)
T ss_dssp ------HHHHHH--------HHHHHHHHHHTTCCH-----HHHHHHHHT---STTC------------------------
T ss_pred ------HHHHHH--------HHHHHHHHHHcCCCH-----HHHHHHHhc---CCCCC---C-------------------
Confidence 345677 999999999999983 456655532 22221 0
Q ss_pred HHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcE
Q psy11160 422 TLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501 (598)
Q Consensus 422 ~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~i 501 (598)
..+.|.+ ++|++ |++.|++.+++.|. +....+.+
T Consensus 260 ---------~~l~pg~--------------G~gg~---c~~KD~~~l~~~A~--------------------~~g~~~~l 293 (446)
T 4a7p_A 260 ---------KFLHAGP--------------GYGGS---CFPKDTLALMKTAA--------------------DNETPLRI 293 (446)
T ss_dssp ----------CCCCCS--------------CCCTT---THHHHHHHHHHHHH--------------------HTTCCCHH
T ss_pred ---------ccCCCCC--------------Ccchh---hHHHHHHHHHHHHH--------------------hcCCCCHH
Confidence 1234533 25677 88888877654331 00001111
Q ss_pred EEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhC
Q psy11160 502 IFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581 (598)
Q Consensus 502 I~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~ 581 (598)
...++++|+.||+++++++.+.++++++++||+||||||||||||+||||++.|++.|.++
T Consensus 294 -------------------~~~~~~iN~~~~~~~~~~i~~~l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~ 354 (446)
T 4a7p_A 294 -------------------VEATVQVNDARKRAMGRKVIKAMGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDA 354 (446)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHC
Confidence 1467889999999999999999988899999999999999999999999999999999999
Q ss_pred CCEEEEECCCCCCc
Q psy11160 582 GAKLKIYDPKLMSR 595 (598)
Q Consensus 582 g~~v~~~DP~~~~~ 595 (598)
|++|.+|||+++++
T Consensus 355 g~~v~~~DP~~~~~ 368 (446)
T 4a7p_A 355 GATVKAYDPEGVEQ 368 (446)
T ss_dssp SCEEEEECSSCHHH
T ss_pred CCEEEEECCCCCHh
Confidence 99999999999643
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-26 Score=235.86 Aligned_cols=242 Identities=11% Similarity=0.064 Sum_probs=180.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCH-------HHHHHHHcCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSE-------ERIRQWNSNK 75 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~-------~~~~~~~~~~ 75 (598)
++|||+|||+|+||.++|..|++ .| ++|++||+++ +.++.+.+
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~---------------------------~G~~~V~~~dr~~~~~~~~~~~~~~~~~-- 73 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGG---------------------------RNAARLAAYDLRFNDPAASGALRARAAE-- 73 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT---------------------------TTCSEEEEECGGGGCTTTHHHHHHHHHH--
T ss_pred cCCeEEEECccHHHHHHHHHHHH---------------------------cCCCeEEEEeCCCccccchHHHHHHHHH--
Confidence 45799999999999999999999 89 9999999997 44444432
Q ss_pred CCCCCCChHHHHhhhcCCceEEec-CHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 76 LPIYEPGLDEVVKKTRDVNLFFST-DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 76 ~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.+. ++ ++.+++++||+||+|||++. ..+.++.+.+.++++++||+
T Consensus 74 -----------------~g~--~~~s~~e~~~~aDvVi~avp~~~---------------~~~~~~~i~~~l~~~~ivv~ 119 (317)
T 4ezb_A 74 -----------------LGV--EPLDDVAGIACADVVLSLVVGAA---------------TKAVAASAAPHLSDEAVFID 119 (317)
T ss_dssp -----------------TTC--EEESSGGGGGGCSEEEECCCGGG---------------HHHHHHHHGGGCCTTCEEEE
T ss_pred -----------------CCC--CCCCHHHHHhcCCEEEEecCCHH---------------HHHHHHHHHhhcCCCCEEEE
Confidence 123 44 77788999999999998763 23345788899999999999
Q ss_pred ecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCce
Q psy11160 155 KSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQ 234 (598)
Q Consensus 155 ~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~ 234 (598)
.||++|++++++... +.+ .|
T Consensus 120 ~st~~p~~~~~~~~~-------------------------------------------------------l~~---~g-- 139 (317)
T 4ezb_A 120 LNSVGPDTKALAAGA-------------------------------------------------------IAT---GK-- 139 (317)
T ss_dssp CCSCCHHHHHHHHHH-------------------------------------------------------HHT---SS--
T ss_pred CCCCCHHHHHHHHHH-------------------------------------------------------HHH---cC--
Confidence 999999999877652 222 12
Q ss_pred eeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHH
Q psy11160 235 FQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRIS 313 (598)
Q Consensus 235 ~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia 313 (598)
..++++|.+..++ +..+. + .+++||++ . +.++++|+.++. .++++++ +++|+.+|+++|++.+.+++
T Consensus 140 ~~~~d~pv~g~~~-a~~g~--l-~i~vgg~~------~-~~~~~ll~~~g~-~v~~~g~~~g~a~~~Kl~~N~~~~~~~~ 207 (317)
T 4ezb_A 140 GSFVEGAVMARVP-PYAEK--V-PILVAGRR------A-VEVAERLNALGM-NLEAVGETPGQASSLKMIRSVMIKGVEA 207 (317)
T ss_dssp CEEEEEEECSCST-TTGGG--S-EEEEESTT------H-HHHHHHHHTTTC-EEEEEESSTTHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeccCCCCch-hhcCC--E-EEEEeCCh------H-HHHHHHHHHhCC-CeEEeCCCcCHHHHHHHHHHHHHHHHHH
Confidence 2344555554221 22222 2 47889875 2 778999999974 5666776 89999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHcCCc-cccc-----ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHH
Q psy11160 314 SINSLSAVCEATGADVSEVAKAVGLDS-RIGA-----KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQL 384 (598)
Q Consensus 314 ~~nE~~~la~~~gid~~ev~~~l~~~~-ri~~-----~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~ 384 (598)
++||+..+|++.|+|+ ++++.+..+. +..+ .++ ++.+||+ ++||++++.+.+++.|++ .+.+.+.++
T Consensus 208 ~~~E~~~la~~~Gid~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~ 283 (317)
T 4ezb_A 208 LLIEALSSAERAGVTE-RILDSVQETFPGLDWRDVADYYLSRTFEHGAR---RVTEMTEAAETIESFGLNAPMSRAACET 283 (317)
T ss_dssp HHHHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHhcCccccHHHhhhhhhcCCCCCCcc---hHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 9999999999999999 6888777543 2111 122 2345554 699999999999999987 344444444
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-27 Score=259.26 Aligned_cols=271 Identities=18% Similarity=0.246 Sum_probs=182.5
Q ss_pred CCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEccC
Q psy11160 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGE 264 (598)
Q Consensus 185 ~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~ 264 (598)
+|++|++++++.|+++++++.+||.+||+|||||++ +.++.++... ....|..+....+|+++..|.
T Consensus 121 ~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~---v~~~ile~~~---------g~~~~~d~~v~~~Pe~~~~G~- 187 (478)
T 3g79_A 121 PDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEG---MAKQILEEES---------GLKAGEDFALAHAPERVMVGR- 187 (478)
T ss_dssp CCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTT---HHHHHHHHHH---------CCCBTTTBEEEECCCCCCTTS-
T ss_pred ccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHH---HHHHHHHHhc---------CCCcCCceeEEeCCccCCccc-
Confidence 999999999999999999999999999999999983 3333221100 112345667789999875553
Q ss_pred CCchhHHHHHHHHHHHhcccCCceEEec-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcccc
Q psy11160 265 ETPEGYAAIESLSWVYEHWIPRKHILTT-NTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIG 343 (598)
Q Consensus 265 ~~~~~~~a~~~l~~ly~~~~~~~~v~~~-~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~ 343 (598)
+.+... . ..++..| +...+ +.+..+|..... . ......++..+|++|+++|..+
T Consensus 188 -------a~~~~~---~----~~~Iv~G~~~~~~---~~~~~ly~~~~~---~---~~~~~~~~~~aE~~Kl~~N~~~-- 242 (478)
T 3g79_A 188 -------LLKNIR---E----HDRIVGGIDEAST---KRAVELYSPVLT---V---GQVIPMSATAAEVTKTAENTFR-- 242 (478)
T ss_dssp -------HHHHHH---H----SCEEEEESSHHHH---HHHHHHHGGGCS---S---CCEEEEEHHHHHHHHHHHHHHH--
T ss_pred -------hhhhhc---C----CcEEEEeCCHHHH---HHHHHHHhhhcc---C---CeEEeCCHHHHHHHHHHHHHHH--
Confidence 332222 1 1345444 33433 333333332100 0 0111234566899999988654
Q ss_pred ccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCC--eEEEEeccccCCCCcccCChHHHHHH
Q psy11160 344 AKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDK--HIAILGFAFKKNTGDTRESPAIHVCR 421 (598)
Q Consensus 344 ~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~--~V~ilGlafK~~t~D~R~Sp~l~li~ 421 (598)
..+++| +|+++.+|+++|++. .++++.+..+ . ||
T Consensus 243 ----a~~Ia~--------~nE~~~l~e~~GiD~-----~~v~~~~~~~---~~~ri------------------------ 278 (478)
T 3g79_A 243 ----DLQIAA--------INQLALYCEAMGINV-----YDVRTGVDSL---KGEGI------------------------ 278 (478)
T ss_dssp ----HHHHHH--------HHHHHHHHHHTTCCH-----HHHHHHHHTS---CCSSS------------------------
T ss_pred ----HHHHHH--------HHHHHHHHHHcCCCH-----HHHHHHHCCC---chhhh------------------------
Confidence 456788 999999999999983 4666655321 1 11
Q ss_pred HHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcE
Q psy11160 422 TLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501 (598)
Q Consensus 422 ~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~i 501 (598)
| ...|.|+++ +|++ |++.|++.+++.|.-+=+.-++|+| .+.+
T Consensus 279 -----~--~~~~~PG~G--------------~GG~---c~~KD~~~l~~~a~~~g~~~~~~~~-------------~~~l 321 (478)
T 3g79_A 279 -----T--RAVLWPGAG--------------VGGH---CLTKDTYHLERGVKIGRGELDYPEG-------------ADSI 321 (478)
T ss_dssp -----C--CCCCCCCSC--------------CCSS---HHHHHHHHHHHHHTTSSCCCCCCSS-------------CCCH
T ss_pred -----c--cccCCCCCC--------------cchh---hHHHHHHHHHHHHHHcCCCcccccc-------------hhHH
Confidence 1 123556542 6777 8888888776544200000000000 0101
Q ss_pred EEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhc---CCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHH
Q psy11160 502 IFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLF---NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTL 578 (598)
Q Consensus 502 I~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~---~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l 578 (598)
.++++++|+.||+++++++.+.+. ++++++||+||||||||||||+||||++.|++.|
T Consensus 322 -------------------i~~~~~iN~~~~~~~~~~i~~~l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L 382 (478)
T 3g79_A 322 -------------------YVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC 382 (478)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH
Confidence 256789999999999999999884 3688999999999999999999999999999999
Q ss_pred HhCCCEEEEECCCCC
Q psy11160 579 LYEGAKLKIYDPKLM 593 (598)
Q Consensus 579 ~~~g~~v~~~DP~~~ 593 (598)
.++|++|.+|||+++
T Consensus 383 ~~~g~~V~~~DP~~~ 397 (478)
T 3g79_A 383 LKAGASVMVHDPYVV 397 (478)
T ss_dssp HHHTCEEEEECSSCC
T ss_pred HHCCCEEEEECCCcc
Confidence 999999999999986
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=229.90 Aligned_cols=237 Identities=10% Similarity=0.076 Sum_probs=182.0
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC--HHHHHHHHcCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS--EERIRQWNSNKLPIYE 80 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~--~~~~~~~~~~~~~~~e 80 (598)
.+|||+|||+|+||.+||..|++ .|+ +|++||++ +++.+.+.+.
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~---------------------------~G~~~V~~~dr~~~~~~~~~~~~~------ 69 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQ---------------------------AGAIDMAAYDAASAESWRPRAEEL------ 69 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHH---------------------------HSCCEEEEECSSCHHHHHHHHHHT------
T ss_pred CCCEEEEECccHHHHHHHHHHHH---------------------------CCCCeEEEEcCCCCHHHHHHHHHC------
Confidence 36899999999999999999999 789 99999997 6777776641
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
++..++++.+++++||+||+|||++. ..++++.+.+.++++++||+.||+.|
T Consensus 70 -------------g~~~~~~~~e~~~~aDvVi~~vp~~~---------------~~~~~~~l~~~l~~~~ivvd~st~~~ 121 (312)
T 3qsg_A 70 -------------GVSCKASVAEVAGECDVIFSLVTAQA---------------ALEVAQQAGPHLCEGALYADFTSCSP 121 (312)
T ss_dssp -------------TCEECSCHHHHHHHCSEEEECSCTTT---------------HHHHHHHHGGGCCTTCEEEECCCCCH
T ss_pred -------------CCEEeCCHHHHHhcCCEEEEecCchh---------------HHHHHHhhHhhcCCCCEEEEcCCCCH
Confidence 35677888889999999999998763 23456888899999999999999999
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
++++++... +.+.. .| ..++++
T Consensus 122 ~~~~~~~~~-------------------------------------------------------~~~~~-~g--~~~vd~ 143 (312)
T 3qsg_A 122 AVKRAIGDV-------------------------------------------------------ISRHR-PS--AQYAAV 143 (312)
T ss_dssp HHHHHHHHH-------------------------------------------------------HHHHC-TT--CEEEEE
T ss_pred HHHHHHHHH-------------------------------------------------------HHhhc-CC--CeEEec
Confidence 999877652 11100 12 234556
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSINSLS 319 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~nE~~ 319 (598)
|.+..+..+ .+.. .+++||++ . +.++++|+.++. .++++++ +++|+.+|+++|++.+.++++++|+.
T Consensus 144 pv~g~~~~~-~g~l---~i~vgg~~------~-~~~~~ll~~~g~-~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 211 (312)
T 3qsg_A 144 AVMSAVKPH-GHRV---PLVVDGDG------A-RRFQAAFTLYGC-RIEVLDGEVGGAALLKMCRSAVLKGLEALFLEAL 211 (312)
T ss_dssp EECSCSTTT-GGGS---EEEEESTT------H-HHHHHHHHTTTC-EEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCchhh-cCCE---EEEecCCh------H-HHHHHHHHHhCC-CeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665533222 2222 58889875 3 778999999974 4566776 89999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHcCCcc------cccccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 320 AVCEATGADVSEVAKAVGLDSR------IGAKFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 320 ~la~~~gid~~ev~~~l~~~~r------i~~~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
.+|++.|+|. ++++.+..+.. ++..++ ++.+||. +.||++++.+.+++.|++
T Consensus 212 ~la~~~Gld~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~ 271 (312)
T 3qsg_A 212 AAAEKMGLAD-RVLASLDASFPEHHLRDLALYLVERNLEHADR---RAHELGEVAATLCSVGVE 271 (312)
T ss_dssp HHHHTTTCHH-HHHHHHHHHSGGGTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCH-HHHHHHHhcCCchhHHHhhhHhhcCCCCcccc---hHHHHHHHHHHHHHcCCC
Confidence 9999999999 79998876531 111222 2345553 489999999999999986
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-26 Score=251.36 Aligned_cols=273 Identities=21% Similarity=0.279 Sum_probs=182.6
Q ss_pred cCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEE
Q psy11160 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRIL 260 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~ 260 (598)
.++.+|+++++++++.|+++++++.+||.+||+||||++.+++.+++.. . .+ ..+..+...++|+++-
T Consensus 92 ~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~---~--------~~-~~~~d~~v~~~Pe~a~ 159 (450)
T 3gg2_A 92 EDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEEL---D--------KR-EVLIDFDIASNPEFLK 159 (450)
T ss_dssp TTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHH---H--------HT-TCCCCEEEEECCCCCC
T ss_pred cCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhc---c--------cc-CcCcceeEEechhhhc
Confidence 4568999999999999999999999999999999999998877666521 0 00 0123455566777654
Q ss_pred EccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 261 IGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 261 vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
.|. +.. .+.. ...+.+|+. +.+..+.+..+|....- +. ......++..+|++|+++|..
T Consensus 160 eG~--------~~~---~~~~----p~~ivvG~~-~~~~~~~~~~l~~~~~~---~~--~~~~~~d~~~aE~~Kl~~N~~ 218 (450)
T 3gg2_A 160 EGN--------AID---DFMK----PDRVVVGVD-SDRARELITSLYKPMLL---NN--FRVLFMDIASAEMTKYAANAM 218 (450)
T ss_dssp TTS--------HHH---HHHS----CSCEEEEES-SHHHHHHHHHHHTTTCC---SC--CCEEEECHHHHHHHHHHHHHH
T ss_pred ccc--------hhh---hccC----CCEEEEEcC-CHHHHHHHHHHHHHHhc---CC--CeEEecCHHHHHHHHHHHHHH
Confidence 332 222 1211 234544421 22334444433332100 00 000123445678888888765
Q ss_pred cccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHH
Q psy11160 341 RIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVC 420 (598)
Q Consensus 341 ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li 420 (598)
+ ...++| +|+++.+|+++|++. .++++.+.. +.|| |.
T Consensus 219 ~------a~~ia~--------~nE~~~l~~~~Gid~-----~~v~~~~~~---~~ri---g~------------------ 255 (450)
T 3gg2_A 219 L------ATRISF--------MNDVANLCERVGADV-----SMVRLGIGS---DSRI---GS------------------ 255 (450)
T ss_dssp H------HHHHHH--------HHHHHHHHHHHTCCH-----HHHHHHHHT---STTT---CS------------------
T ss_pred H------HHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHHcC---CCCC---Cc------------------
Confidence 4 334567 999999999999983 455555432 1121 10
Q ss_pred HHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCc
Q psy11160 421 RTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPA 500 (598)
Q Consensus 421 ~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~ 500 (598)
..|.|++ ++|++ |++.|++.+++.|. +....+.
T Consensus 256 ----------~~~~pg~--------------G~gg~---c~~KD~~~l~~~a~--------------------~~g~~~~ 288 (450)
T 3gg2_A 256 ----------KFLYPGC--------------GYGGS---CFPKDVKALIRTAE--------------------DNGYRME 288 (450)
T ss_dssp ----------SSCCCSS--------------CCCSS---HHHHHHHHHHHHHH--------------------HTTCCCH
T ss_pred ----------ccCCCCC--------------CCCcc---cHHhhHHHHHHHHH--------------------HcCCCcH
Confidence 1134432 25677 88888877654331 0000111
Q ss_pred EEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHh
Q psy11160 501 YIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580 (598)
Q Consensus 501 iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~ 580 (598)
+ ...++++|+.||+++++++.+.++++++++||+||||||||||||+||||++.|++.|.+
T Consensus 289 l-------------------~~~~~~iN~~~~~~~~~~~~~~~~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~ 349 (450)
T 3gg2_A 289 V-------------------LEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLE 349 (450)
T ss_dssp H-------------------HHHHHHHHHHHTTHHHHHHHHHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHH
T ss_pred H-------------------HHHHHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHH
Confidence 1 146788999999999999999998889999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCCCc
Q psy11160 581 EGAKLKIYDPKLMSR 595 (598)
Q Consensus 581 ~g~~v~~~DP~~~~~ 595 (598)
+|++|.+|||+++++
T Consensus 350 ~g~~v~~~DP~~~~~ 364 (450)
T 3gg2_A 350 VGCRVRVYDPVAMKE 364 (450)
T ss_dssp TTCEEEEECSSCHHH
T ss_pred CCCEEEEECCCCcHH
Confidence 999999999999653
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-26 Score=244.48 Aligned_cols=252 Identities=17% Similarity=0.224 Sum_probs=158.8
Q ss_pred CCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEc
Q psy11160 183 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIG 262 (598)
Q Consensus 183 ~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vG 262 (598)
+.+|+++++++++.|++ ++++.+||.+||+|||||+ + +.+. + .. ....++|+++-+|
T Consensus 126 ~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~---~-l~~~------l---------~~---~~v~~sPe~~~~G 182 (432)
T 3pid_A 126 NYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTR---D-IKER------L---------GI---DNVIFSPEFLREG 182 (432)
T ss_dssp TEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHH---H-HHHH------H---------TC---CCEEECCCCCCTT
T ss_pred ccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHH---H-HHHH------H---------hh---ccEeecCccCCcc
Confidence 56899999999999999 9999999999999999997 2 3320 1 11 1345699986444
Q ss_pred cCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccc
Q psy11160 263 GEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRI 342 (598)
Q Consensus 263 g~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri 342 (598)
+ +... . +. .+++.+|+.. +.+..+...|....+. +.. -.-..++..+|++|+++|..+
T Consensus 183 ~--------A~~~---~---l~-p~rIvvG~~~--~~~~~~~~ll~~~~~~--~~~--~v~~~~~~~AE~~Kl~~N~~~- 240 (432)
T 3pid_A 183 R--------ALYD---N---LH-PSRIVIGERS--ARAERFADLLKEGAIK--QDI--PTLFTDSTEAEAIKLFANTYL- 240 (432)
T ss_dssp S--------HHHH---H---HS-CSCEEESSCS--HHHHHHHHHHHHHCSS--SSC--CEEECCHHHHHHHHHHHHHHH-
T ss_pred h--------hhhc---c---cC-CceEEecCCH--HHHHHHHHHHHhhhcc--CCC--eEEecCccHHHHHHHHHHHHH-
Confidence 3 3221 1 11 2456565432 1222222222210000 000 000135567899999988654
Q ss_pred cccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHH
Q psy11160 343 GAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRT 422 (598)
Q Consensus 343 ~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~ 422 (598)
...++| +|+++.+|+++|++. +++++.+.. +.||+ . +
T Consensus 241 -----a~~Ia~--------~nEl~~lae~~GiD~-----~~v~~~~~~---dprig---~--~----------------- 277 (432)
T 3pid_A 241 -----ALRVAY--------FNELDSYAESQGLNS-----KQIIEGVCL---DPRIG---N--H----------------- 277 (432)
T ss_dssp -----HHHHHH--------HHHHHHHHHHTTCCH-----HHHHHHHHT---STTTC---S--S-----------------
T ss_pred -----HHHHHH--------HHHHHHHHHHcCCCH-----HHHHHHHcc---CCCCC---c--c-----------------
Confidence 455778 999999999999983 466666531 22211 0 0
Q ss_pred HHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEE
Q psy11160 423 LLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYI 502 (598)
Q Consensus 423 L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI 502 (598)
+..|++ ++||| |++.|++.++..+. ..+ +.+
T Consensus 278 ---------~~~pg~--------------G~GG~---C~pkD~~~L~~~~~------------~~~----------~~l- 308 (432)
T 3pid_A 278 ---------YNNPSF--------------GYGGY---CLPKDTKQLLANYE------------SVP----------NNI- 308 (432)
T ss_dssp ---------SCCCCS--------------CCCTT---THHHHHHHHHHHTT------------TSC----------CSH-
T ss_pred ---------cCCCCC--------------CCccc---chhhhHHHHHHHhc------------CCc----------hhH-
Confidence 011332 37888 99999987653220 000 111
Q ss_pred EecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCC
Q psy11160 503 FDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG 582 (598)
Q Consensus 503 ~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g 582 (598)
.++++++|+.||+++++++.+. .+++|+||||||||||||+||||++.|++.|.++|
T Consensus 309 ------------------i~~~~~~N~~~~~~v~~~i~~~-----~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G 365 (432)
T 3pid_A 309 ------------------IAAIVDANRTRKDFIADSILAR-----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKG 365 (432)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHT-----CCSSEEEECC-----------CHHHHHHHHHHHTT
T ss_pred ------------------HHHHHHHHHhhHHHHHHHHHhh-----cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcC
Confidence 1567899999999999999864 36899999999999999999999999999999999
Q ss_pred CEEEEECCCCCC
Q psy11160 583 AKLKIYDPKLMS 594 (598)
Q Consensus 583 ~~v~~~DP~~~~ 594 (598)
++|.+|||+++.
T Consensus 366 ~~V~~~DP~~~~ 377 (432)
T 3pid_A 366 IPVIIYEPVMQE 377 (432)
T ss_dssp CCEEEECTTCCS
T ss_pred CEEEEECCCCCh
Confidence 999999999974
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=218.89 Aligned_cols=237 Identities=10% Similarity=0.055 Sum_probs=182.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++||+|||+|.||.+||..|++ .|++|++||+++++++.+.+.
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~~---------- 51 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLK---------------------------QGKRVAIWNRSPGKAAALVAA---------- 51 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSHHHHHHHHHH----------
T ss_pred CCeEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHC----------
Confidence 5799999999999999999999 899999999999999887641
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH--HHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR--MIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+...++++.+++++||+||+|||++. .+++++. .+.. +.++++||+.||+.|.+
T Consensus 52 ---------g~~~~~~~~e~~~~aDvVi~~vp~~~--------------~~~~v~~~~~l~~-~~~g~ivid~st~~~~~ 107 (306)
T 3l6d_A 52 ---------GAHLCESVKAALSASPATIFVLLDNH--------------ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDE 107 (306)
T ss_dssp ---------TCEECSSHHHHHHHSSEEEECCSSHH--------------HHHHHHTSTTHHH-HTTTCEEEECCCCCTTH
T ss_pred ---------CCeecCCHHHHHhcCCEEEEEeCCHH--------------HHHHHhcccchhh-ccCCCEEEECCCCCHHH
Confidence 24567889999999999999998753 3555554 5544 57899999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++... +.+ .| ..++++|.
T Consensus 108 ~~~l~~~-------------------------------------------------------~~~---~g--~~~vdapv 127 (306)
T 3l6d_A 108 GLALQGL-------------------------------------------------------VNQ---AG--GHYVKGMI 127 (306)
T ss_dssp HHHHHHH-------------------------------------------------------HHH---TT--CEEEEEEE
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CeEEeccc
Confidence 8777651 222 12 34566666
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe--cC-chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT--TN-TWSSELSKLAANAFLAQRISSINSLS 319 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~--~~-~~~Ae~~Kl~~N~~~~~~ia~~nE~~ 319 (598)
+..+........ .+++||+. +++++++++|+.++. .++++ ++ +++++++| .+.+.++++++|..
T Consensus 128 ~g~~~~~~~~~~---~i~~gg~~-----~~~~~~~~ll~~lg~-~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~ 194 (306)
T 3l6d_A 128 VAYPRNVGHRES---HSIHTGDR-----EAFEQHRALLEGLAG-HTVFLPWDEALAFATVLH----AHAFAAMVTFFEAV 194 (306)
T ss_dssp ESCGGGTTCTTC---EEEEEECH-----HHHHHHHHHHHTTCS-EEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred ccCcccccCCce---EEEEcCCH-----HHHHHHHHHHHHhcC-CEEEecCCCCccHHHHHH----HHHHHHHHHHHHHH
Confidence 643322211111 57889864 689999999999964 56667 65 79999999 45567899999999
Q ss_pred HHHHHcCCCHHHHHHHHcCCc--cccc-------ccc--ccCcc-ccccchhhhHHHHHHHHHHcCCh
Q psy11160 320 AVCEATGADVSEVAKAVGLDS--RIGA-------KFL--QASVG-FGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 320 ~la~~~gid~~ev~~~l~~~~--ri~~-------~~l--~~~~g-fgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
.++++.|+|++++.++++... ..++ .++ ++.++ |...|+.||++++.+.+++.|++
T Consensus 195 ~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~ 262 (306)
T 3l6d_A 195 GAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVW 262 (306)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999998753 1111 122 34454 68899999999999999999987
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=218.39 Aligned_cols=242 Identities=14% Similarity=0.131 Sum_probs=188.0
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+.|||+|||+|.||.+||..|++ .|++|++||+++++++.+.+.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~~--------- 64 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRK---------------------------GGHECVVYDLNVNAVQALERE--------- 64 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHTT---------
T ss_pred cCCEEEEECchHHHHHHHHHHHh---------------------------CCCEEEEEeCCHHHHHHHHHC---------
Confidence 34799999999999999999999 899999999999999998753
Q ss_pred HHHHhhhcCCceEEecCHHHHhccC---cEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKA---QLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~a---dviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
++..+++++++++++ |+||+|||++ .++++++.+.+.++++++||+.||+.|
T Consensus 65 ----------g~~~~~s~~e~~~~a~~~DvVi~~vp~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~ 119 (358)
T 4e21_A 65 ----------GIAGARSIEEFCAKLVKPRVVWLMVPAA---------------VVDSMLQRMTPLLAANDIVIDGGNSHY 119 (358)
T ss_dssp ----------TCBCCSSHHHHHHHSCSSCEEEECSCGG---------------GHHHHHHHHGGGCCTTCEEEECSSCCH
T ss_pred ----------CCEEeCCHHHHHhcCCCCCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 234567888889889 9999999764 367788899999999999999999999
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
.++++++.. +.+ .| +.++++
T Consensus 120 ~~~~~~~~~-------------------------------------------------------l~~---~g--~~~vda 139 (358)
T 4e21_A 120 QDDIRRADQ-------------------------------------------------------MRA---QG--ITYVDV 139 (358)
T ss_dssp HHHHHHHHH-------------------------------------------------------HHT---TT--CEEEEE
T ss_pred HHHHHHHHH-------------------------------------------------------HHH---CC--CEEEeC
Confidence 999877641 222 12 345677
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC-------------------CceEEecCchhHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP-------------------RKHILTTNTWSSELSK 301 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~-------------------~~~v~~~~~~~Ae~~K 301 (598)
|.+..+-.+..+. .+|+||++ ++++.++++|+.++. ...+++|+.++|+++|
T Consensus 140 pVsGg~~~a~~G~----~im~GG~~-----~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~K 210 (358)
T 4e21_A 140 GTSGGIFGLERGY----CLMIGGEK-----QAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVK 210 (358)
T ss_dssp EEECGGGHHHHCC----EEEEESCH-----HHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHH
T ss_pred CCCCCHHHHhcCC----eeeecCCH-----HHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHH
Confidence 7765543343332 58999975 689999999999982 2467788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------------------------CCCHHHHHHHHcCCcccccccc-------ccC
Q psy11160 302 LAANAFLAQRISSINSLSAVCEAT------------------------GADVSEVAKAVGLDSRIGAKFL-------QAS 350 (598)
Q Consensus 302 l~~N~~~~~~ia~~nE~~~la~~~------------------------gid~~ev~~~l~~~~ri~~~~l-------~~~ 350 (598)
+++|.+.+.++++.+|...++++. |+|..++.++++....+++.++ .-+
T Consensus 211 l~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~ 290 (358)
T 4e21_A 211 MVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDS 290 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998 8999999999998764433221 112
Q ss_pred cccc-ccchhhhH---HHHHHHHHHcCCh
Q psy11160 351 VGFG-GSCFQKDI---LNLVYICECLNLP 375 (598)
Q Consensus 351 ~gfg-g~cl~KD~---~~L~~~a~~~G~~ 375 (598)
+.+. -.-..||. +.....|.+.|++
T Consensus 291 p~~~~~~~~~~d~g~~r~~~~~A~~~gvp 319 (358)
T 4e21_A 291 PDLQEFQGRVSDSGEGRWTVAAAIDEGVP 319 (358)
T ss_dssp TTCTTC--CCCCCSHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHhcCcHHHHHHHHHHcCCC
Confidence 2221 12233454 5577778888876
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=204.46 Aligned_cols=254 Identities=17% Similarity=0.233 Sum_probs=192.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||..+|..|+. .|++|++||+++++.+.+.+.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~---------------------------~g~~V~~~~~~~~~~~~~~~~----------- 47 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLK---------------------------AGYSLVVSDRNPEAIADVIAA----------- 47 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHT-----------
T ss_pred ceEEEECchHHHHHHHHHHHh---------------------------CCCEEEEEeCCHHHHHHHHHC-----------
Confidence 699999999999999999999 899999999999999887742
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++..+.++.++++++|+||+|+|++. .++.++ +.+.+.++++++|+..||..+.+
T Consensus 48 --------g~~~~~~~~~~~~~~D~vi~~v~~~~--------------~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~ 105 (299)
T 1vpd_A 48 --------GAETASTAKAIAEQCDVIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVLIDMSSIAPLA 105 (299)
T ss_dssp --------TCEECSSHHHHHHHCSEEEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHH
T ss_pred --------CCeecCCHHHHHhCCCEEEEECCCHH--------------HHHHHHhCcchHhhcCCCCCEEEECCCCCHHH
Confidence 24567788888999999999997653 356666 67888899999999999999988
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++.+... +.. .| ..++.+|.
T Consensus 106 ~~~l~~~-------------------------------------------------------~~~---~g--~~~~~~pv 125 (299)
T 1vpd_A 106 SREISDA-------------------------------------------------------LKA---KG--VEMLDAPV 125 (299)
T ss_dssp HHHHHHH-------------------------------------------------------HHT---TT--CEEEECCE
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CeEEEecC
Confidence 7766541 211 11 23445565
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
+..+..+..... .+++|++. +.++.++++|+.++. ..++.++.+.+..+|+++|.+.+..+.+++|+..++
T Consensus 126 ~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~ 196 (299)
T 1vpd_A 126 SGGEPKAIDGTL---SVMVGGDK-----AIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLA 196 (299)
T ss_dssp ESHHHHHHHTCE---EEEEESCH-----HHHHHHHHHHHTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHhHHhcCCE---EEEeCCCH-----HHHHHHHHHHHHHcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222222222 46677742 578889999998873 455567889999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCcccc-------cccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHHH
Q psy11160 323 EATGADVSEVAKAVGLDSRIG-------AKFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYESL 388 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~-------~~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~~ 388 (598)
++.|++.+++.+++..+..-+ +.++ ++.+||...++.||+..+.+.+++.|++ .+.+.+.++++.+
T Consensus 197 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~ 272 (299)
T 1vpd_A 197 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQAL 272 (299)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 999999999999988654211 1122 2357888999999999999999999987 3444444444443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-24 Score=233.60 Aligned_cols=272 Identities=35% Similarity=0.446 Sum_probs=176.0
Q ss_pred cCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEE
Q psy11160 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRIL 260 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~ 260 (598)
.++.+|+++++++++.|+++++++.+||.+||+|||+++. +.+.++... ....+..+....+|++.-
T Consensus 105 ~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~----l~~~l~~~~---------~~~~~~d~~v~~~Pe~~~ 171 (481)
T 2o3j_A 105 KGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAES----IGCILREAQ---------KNNENLKFQVLSNPEFLA 171 (481)
T ss_dssp TTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHH----HHHHHHHHT---------C----CCEEEEECCCCCC
T ss_pred ccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHH----HHHHHHHhh---------CcCcCCceEEEeCccccc
Confidence 3468999999999999999999999999999999999973 444332100 001233344567888764
Q ss_pred EccCCCchhHHHHHHHHHHHhcccCCceEEecCch--hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHc
Q psy11160 261 IGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTW--SS-ELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 261 vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~--~A-e~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~ 337 (598)
.|. +.. .++. ..++.+|+.. .+ +..+.+..+|....- .......++..+|+.|+++
T Consensus 172 ~G~--------a~~---~~~~----~~~iviG~~~~~~~~~a~~~l~~l~~~~~~------~~~~~~~d~~~ae~~Kl~~ 230 (481)
T 2o3j_A 172 EGT--------AMK---DLAN----PDRVLIGGESSPEGLQAVAELVRIYENWVP------RNRIITTNTWSSELSKLVA 230 (481)
T ss_dssp TTC--------HHH---HHHS----CSCEEEEECSSHHHHHHHHHHHHHHHTTSC------GGGEEEEEHHHHHHHHHHH
T ss_pred ccc--------hhh---cccC----CCEEEEEecCchhhHHHHHHHHHHHHhhcC------CCeEEecCHHHHHHHHHHH
Confidence 442 222 2221 2345544322 11 233334333332100 0001112344578888887
Q ss_pred CCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHH
Q psy11160 338 LDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAI 417 (598)
Q Consensus 338 ~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l 417 (598)
|..+ ...++| +|++..+|++.|++. .++++.+.. +.++ |.
T Consensus 231 N~~~------a~~ia~--------~nE~~~la~~~Gid~-----~~v~~~~~~---~~ri---~~--------------- 270 (481)
T 2o3j_A 231 NAFL------AQRISS--------INSISAVCEATGAEI-----SEVAHAVGY---DTRI---GS--------------- 270 (481)
T ss_dssp HHHH------HHHHHH--------HHHHHHHHHHHSCCH-----HHHHHHHHT---STTT---CS---------------
T ss_pred HHHH------HHHHHH--------HHHHHHHHHHhCcCH-----HHHHHHHcc---CCCC---CC---------------
Confidence 7543 234567 999999999999983 455555431 1111 10
Q ss_pred HHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccC
Q psy11160 418 HVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMM 497 (598)
Q Consensus 418 ~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~ 497 (598)
..|.|+++ +|+| |++.|++.+++.|. +...+...
T Consensus 271 -------------~~~~pg~g--------------~gg~---c~~KD~~~l~~~A~------------~~g~~~~~---- 304 (481)
T 2o3j_A 271 -------------KFLQASVG--------------FGGS---CFQKDVLSLVYLCE------------SLNLPQVA---- 304 (481)
T ss_dssp -------------SSCCCCSC--------------CCSS---SHHHHHHHHHHHHH------------HTTCHHHH----
T ss_pred -------------CCCCCCCc--------------cCCc---cHHHHHHHHHHHHH------------HcCCCccc----
Confidence 12455432 5667 88888876654331 01110000
Q ss_pred CCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHH
Q psy11160 498 KPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRT 577 (598)
Q Consensus 498 ~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~ 577 (598)
| + ...+.++|+.||.++++++.+.+++.+++++|+|||||||+||||+||||++.|++.
T Consensus 305 -~-l-------------------~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~ 363 (481)
T 2o3j_A 305 -D-Y-------------------WQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKH 363 (481)
T ss_dssp -H-H-------------------HHHHHHHHHHHHHHHHHHHHHHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHH
T ss_pred -h-H-------------------HHHHHHHHHhhHHHHHHHHHHhhccccCCCeEEEEeeeeCCCCCccccChHHHHHHH
Confidence 0 0 145778999999999999999997778999999999999999999999999999999
Q ss_pred HHhCCCEEEEECCCCC
Q psy11160 578 LLYEGAKLKIYDPKLM 593 (598)
Q Consensus 578 l~~~g~~v~~~DP~~~ 593 (598)
|.++|++|.+|||++.
T Consensus 364 L~~~g~~v~~~DP~~~ 379 (481)
T 2o3j_A 364 LMEEHAKLSVYDPKVQ 379 (481)
T ss_dssp HHHTTCEEEEECSSSC
T ss_pred HHHCCCEEEEECCCCC
Confidence 9999999999999985
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=225.94 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=171.0
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEE
Q psy11160 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILI 261 (598)
Q Consensus 182 ~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~v 261 (598)
.+.+|+++++++++.|++ ++++.+||.+||+|+|+++ .+.+ . + +.. ...++|+++-.
T Consensus 89 ~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~----~l~~-----~----------~--~~~-~v~~~Pe~~~~ 145 (402)
T 1dlj_A 89 INYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFIT----EMRQ-----K----------F--QTD-RIIFSPEFLRE 145 (402)
T ss_dssp TTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHH----HHHH-----H----------T--TCS-CEEECCCCCCT
T ss_pred CCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHH----HHHH-----H----------h--CCC-eEEECCccccC
Confidence 457899999999999999 9999999999999999986 2332 0 1 111 34567887654
Q ss_pred ccCCCchhHHHHHHHHHHHhcccCCceEEecCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy11160 262 GGEETPEGYAAIESLSWVYEHWIPRKHILTTNTW-----SSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAV 336 (598)
Q Consensus 262 Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~-----~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l 336 (598)
|.. .. ... . ..++.+|+.. ..+.++.+...|....+. +.. .....++..+++.|++
T Consensus 146 G~a--------~~---~~~---~-~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~--~~~~~di~~ae~~Kl~ 206 (402)
T 1dlj_A 146 SKA--------LY---DNL---Y-PSRIIVSCEENDSPKVKADAEKFALLLKSAAKK--NNV--PVLIMGASEAEAVKLF 206 (402)
T ss_dssp TST--------TH---HHH---S-CSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSC--SCC--CEEEECHHHHHHHHHH
T ss_pred cch--------hh---ccc---C-CCEEEEeCCCcccchhHHHHHHHHHHHhhhhcc--CCc--eEEecChHHHHHHHHH
Confidence 432 11 111 1 2445555433 223333232222210000 000 0001245667888888
Q ss_pred cCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChH
Q psy11160 337 GLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPA 416 (598)
Q Consensus 337 ~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~ 416 (598)
.|..+ ...++| +|+++.+|++.|++. .++++.+.. +.+| | +
T Consensus 207 ~N~~~------a~~ia~--------~nE~~~l~~~~Gid~-----~~v~~~~~~---~~ri---~-------------~- 247 (402)
T 1dlj_A 207 ANTYL------ALRVAY--------FNELDTYAESRKLNS-----HMIIQGISY---DDRI---G-------------M- 247 (402)
T ss_dssp HHHHH------HHHHHH--------HHHHHHHHHHTTCCH-----HHHHHHHHT---STTT---C-------------S-
T ss_pred HHHHH------HHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHhcc---CCCC---C-------------c-
Confidence 87643 334677 999999999999983 455555431 1111 0 0
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhcc
Q psy11160 417 IHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM 496 (598)
Q Consensus 417 l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m 496 (598)
..+.|++ ++|+| |++.|++.++..+. .+
T Consensus 248 --------------~~~~pg~--------------g~gg~---c~~kD~~~l~~~a~------------~~--------- 275 (402)
T 1dlj_A 248 --------------HYNNPSF--------------GYGGY---SLPKDTKQLLANYN------------NI--------- 275 (402)
T ss_dssp --------------SSCCCCS--------------SCCSS---HHHHHHHHHHHHHT------------TS---------
T ss_pred --------------CCCCCCC--------------ccCCc---cHHhhHHHHHHHhc------------CC---------
Confidence 1123433 26777 88888877654320 00
Q ss_pred CCCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcC-CCCCCEEEEEeeecCCCCCCcCCCchHHHH
Q psy11160 497 MKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFN-TVSDKHIAILGFAFKKNTGDTRESPAIHVC 575 (598)
Q Consensus 497 ~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~-~~~~~~i~v~GlafK~~~~d~R~sp~~~i~ 575 (598)
.+.+ ...++++|+.||+++++++.+.+++ .+++++|+|||||||+||||+||||++.|+
T Consensus 276 -~~~l-------------------~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~v~vlGlafK~~~~d~R~sp~~~i~ 335 (402)
T 1dlj_A 276 -PQTL-------------------IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVI 335 (402)
T ss_dssp -SCSH-------------------HHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHH
T ss_pred -ChHH-------------------HHHHHHHHHHhHHHHHHHHHHHhhhcCCCCCEEEEEeeeccCCCcccccChHHHHH
Confidence 0111 1467899999999999999999864 678999999999999999999999999999
Q ss_pred HHHHhCCCEEEEECCCCCC
Q psy11160 576 RTLLYEGAKLKIYDPKLMS 594 (598)
Q Consensus 576 ~~l~~~g~~v~~~DP~~~~ 594 (598)
+.|.++|++|.+|||++.+
T Consensus 336 ~~L~~~g~~v~~~DP~~~~ 354 (402)
T 1dlj_A 336 DILKSKDIKIIIYEPMLNK 354 (402)
T ss_dssp HHHHTSSCEEEEECTTCSC
T ss_pred HHHHHCCCEEEEECCCCCh
Confidence 9999999999999998754
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-21 Score=196.65 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=190.9
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.++|||+|||+|.||..+|..|+. .|++|++||+++++.+.+.+.
T Consensus 2 ~~~~~i~iiG~G~~G~~~a~~l~~---------------------------~g~~V~~~~~~~~~~~~~~~~-------- 46 (301)
T 3cky_A 2 EKSIKIGFIGLGAMGKPMAINLLK---------------------------EGVTVYAFDLMEANVAAVVAQ-------- 46 (301)
T ss_dssp --CCEEEEECCCTTHHHHHHHHHH---------------------------TTCEEEEECSSHHHHHHHHTT--------
T ss_pred CCCCEEEEECccHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHC--------
Confidence 346899999999999999999999 899999999999999887752
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH---HHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR---MIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~ivv~~STv~ 159 (598)
++..++++.++++++|+||+|+|.+. .++.++. .+.+.++++++|+..|+..
T Consensus 47 -----------g~~~~~~~~~~~~~~D~vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 47 -----------GAQACENNQKVAAASDIIFTSLPNAG--------------IVETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp -----------TCEECSSHHHHHHHCSEEEECCSSHH--------------HHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred -----------CCeecCCHHHHHhCCCEEEEECCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 24556788888999999999997653 3566664 7888899999999999999
Q ss_pred hHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEE
Q psy11160 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILS 239 (598)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~ 239 (598)
|++.+.+... +.. .| +.++.
T Consensus 102 ~~~~~~l~~~-------------------------------------------------------~~~---~g--~~~~~ 121 (301)
T 3cky_A 102 PSSTLKMAKV-------------------------------------------------------AAE---KG--IDYVD 121 (301)
T ss_dssp HHHHHHHHHH-------------------------------------------------------HHH---TT--CEEEE
T ss_pred HHHHHHHHHH-------------------------------------------------------HHH---cC--CeEEE
Confidence 8887766541 111 11 23345
Q ss_pred CCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLS 319 (598)
Q Consensus 240 ~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~ 319 (598)
+|....+..+..+. ..+++|++. +.++.++++|+.++. ..++++..+.+..+|+++|.+....+.+++|+.
T Consensus 122 ~p~~~~~~~a~~g~---~~~~~~g~~-----~~~~~v~~ll~~~g~-~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~ 192 (301)
T 3cky_A 122 APVSGGTKGAEAGT---LTIMVGASE-----AVFEKIQPVLSVIGK-DIYHVGDTGAGDAVKIVNNLLLGCNMASLAEAL 192 (301)
T ss_dssp CCEESHHHHHHHTC---EEEEEESCH-----HHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHcCC---eEEEECCCH-----HHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543221111111 135677742 578889999998873 445577889999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHcCCcc-------ccc-ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 320 AVCEATGADVSEVAKAVGLDSR-------IGA-KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 320 ~la~~~gid~~ev~~~l~~~~r-------i~~-~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
.++++.|++.+++.+++..... .++ .++ ++.+||...++.||+..+.+.+++.|++ .+.+.+.++++.
T Consensus 193 ~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~ 271 (301)
T 3cky_A 193 VLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEG 271 (301)
T ss_dssp HHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999986531 122 232 3456888899999999999999999987 334434444443
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-24 Score=235.16 Aligned_cols=272 Identities=22% Similarity=0.293 Sum_probs=176.2
Q ss_pred ccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEE
Q psy11160 180 FQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRI 259 (598)
Q Consensus 180 ~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv 259 (598)
...+.+||++++++++.|+++++++.+||.+||+||||++.+.+.+.+.+. .+.+ +..+...++|+++
T Consensus 97 ~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~---------~g~~---~~~~~v~~~Pe~~ 164 (478)
T 2y0c_A 97 DEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELA---------KRGG---DQMFSVVSNPEFL 164 (478)
T ss_dssp CTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHH---------HTTC---CCCEEEEECCCCC
T ss_pred ccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhc---------CCCC---CccEEEEEChhhh
Confidence 345789999999999999999999999999999999999987776654110 0000 1234457778776
Q ss_pred EEccCCCchhHHHHHHHHHHHhcccCCceEEecCc-hhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy11160 260 LIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNT-WSS--ELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAV 336 (598)
Q Consensus 260 ~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~-~~A--e~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l 336 (598)
..|. +...+. . ...+.+|.. ... +..+.+..+|... +. ++ ......++..+|+.|++
T Consensus 165 ~eG~--------~~~~~~------~-p~~iviG~~~~~~~~~~~~~~~~l~~~~-~~--~~--~~~~~~di~~ae~~Kl~ 224 (478)
T 2y0c_A 165 KEGA--------AVDDFT------R-PDRIVIGCDDDVPGERARELMKKLYAPF-NR--NH--ERTLYMDVRSAEFTKYA 224 (478)
T ss_dssp CTTC--------HHHHHH------S-CSCEEEECCSSHHHHHHHHHHHHHTGGG-GS--SS--CCEEEECHHHHHHHHHH
T ss_pred cccc--------eeeccC------C-CCEEEEEECCCcccHHHHHHHHHHHHHH-hc--cC--CeEEcCCHHHHHHHHHH
Confidence 5553 221111 1 234555543 211 3444444333320 00 00 00111244556888888
Q ss_pred cCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChH
Q psy11160 337 GLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPA 416 (598)
Q Consensus 337 ~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~ 416 (598)
.|..+ ...++| +|++..+|++.|++. .++++.+.. ..|+ |.
T Consensus 225 ~N~~~------a~~ia~--------~nE~~~la~~~Gid~-----~~v~~~i~~---~~ri---g~-------------- 265 (478)
T 2y0c_A 225 ANAML------ATRISF--------MNELANLADRFGADI-----EAVRRGIGS---DPRI---GY-------------- 265 (478)
T ss_dssp HHHHH------HHHHHH--------HHHHHHHHHHTTCCH-----HHHHHHHHT---STTT---CS--------------
T ss_pred HHHHH------HHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHHhc---CCcc---Cc--------------
Confidence 77543 334567 999999999999983 344443321 1111 10
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhcc
Q psy11160 417 IHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM 496 (598)
Q Consensus 417 l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m 496 (598)
..|.|.. .+|++ |+..|+..+++.+
T Consensus 266 --------------~~~~pG~--------------g~gg~---c~~kD~~~l~~~A------------------------ 290 (478)
T 2y0c_A 266 --------------HFLYAGC--------------GYGGS---CFPKDVEALIRTA------------------------ 290 (478)
T ss_dssp --------------TTCCCSS--------------CCCSS---SHHHHHHHHHHHH------------------------
T ss_pred --------------ccCCCCc--------------ccccC---cCHHHHHHHHHHH------------------------
Confidence 0122322 14555 6655554433211
Q ss_pred CCCcEEEecCCCCChhhhhhccce---eeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHH
Q psy11160 497 MKPAYIFDGRKILNHDALLDIGFN---VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIH 573 (598)
Q Consensus 497 ~~~~iI~D~r~i~d~~~~~~~G~~---y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~ 573 (598)
++.|+. .+.+.++|+.||+++++++.+.+++++++++|+||||||||||||+||||++.
T Consensus 291 ------------------~~~gv~~pl~~~v~~in~~~~~~~~~~~~~~~~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~ 352 (478)
T 2y0c_A 291 ------------------DEHGQSLQILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRE 352 (478)
T ss_dssp ------------------HHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCSCCTTCEEEEECCSSSSSCCCCTTCHHHH
T ss_pred ------------------HHcCCCcHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCEEEEEecccCCCCCccccChHHH
Confidence 111221 14678899999999999999999778999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCCc
Q psy11160 574 VCRTLLYEGAKLKIYDPKLMSR 595 (598)
Q Consensus 574 i~~~l~~~g~~v~~~DP~~~~~ 595 (598)
|++.|.++|++|.+|||+++++
T Consensus 353 i~~~L~~~g~~v~~~DP~~~~~ 374 (478)
T 2y0c_A 353 LIAELLSRGARIAAYDPVAQEE 374 (478)
T ss_dssp HHHHHHHTTCEEEEECTTTHHH
T ss_pred HHHHHHHCCCEEEEECCCccHH
Confidence 9999999999999999998653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-23 Score=228.44 Aligned_cols=270 Identities=35% Similarity=0.458 Sum_probs=176.1
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEE
Q psy11160 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILI 261 (598)
Q Consensus 182 ~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~v 261 (598)
++.+||+|++++++.|+++++++.+||.+||+|+|+++ .+.+.++.. ...+..+...++|+++..
T Consensus 102 ~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~----~l~~~l~~~-----------~~~~~d~~V~~~Pe~~~~ 166 (467)
T 2q3e_A 102 GRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAE----SIRRIFDAN-----------TKPNLNLQVLSNPEFLAE 166 (467)
T ss_dssp TTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHH----HHHHHHHHT-----------CCTTCEEEEEECCCCCCT
T ss_pred cCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHH----HHHHHHHHh-----------CCCCCCeEEEeCHHHhhc
Confidence 35799999999999999999999999999999999986 255433210 011223344567776543
Q ss_pred ccCCCchhHHHHHHHHHHHhcccCCceEEecCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 262 GGEETPEGYAAIESLSWVYEHWIPRKHILTTNT---WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 262 Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~---~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
|. +. ..++. ..++.+++. .+.+..+.+..+|.... . .......++..+++.|++.|
T Consensus 167 G~--------~~---~d~~~----~~rivvGg~~~~~~~~~~~~~~~l~~~~~-g-----~~~~~~~~~~~ae~~Kl~~N 225 (467)
T 2q3e_A 167 GT--------AI---KDLKN----PDRVLIGGDETPEGQRAVQALCAVYEHWV-P-----REKILTTNTWSSELSKLAAN 225 (467)
T ss_dssp TS--------HH---HHHHS----CSCEEEECCSSHHHHHHHHHHHHHHTTTS-C-----GGGEEEECHHHHHHHHHHHH
T ss_pred cc--------ch---hhccC----CCEEEECCCCCCCCHHHHHHHHHHHHHhc-c-----CCeEEecCHHHHHHHHHHHH
Confidence 32 22 22221 245555542 24455555554444320 0 00011134456788888877
Q ss_pred CccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHH
Q psy11160 339 DSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIH 418 (598)
Q Consensus 339 ~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~ 418 (598)
..+ ...++| +|++..+|++.|++. .++++.+.. +.+ +|.
T Consensus 226 ~~~------a~~ia~--------~nE~~~l~~~~Gid~-----~~v~~~~~~---~~~---~~~---------------- 264 (467)
T 2q3e_A 226 AFL------AQRISS--------INSISALCEATGADV-----EEVATAIGM---DQR---IGN---------------- 264 (467)
T ss_dssp HHH------HHHHHH--------HHHHHHHHHHHTCCH-----HHHHHHHHT---STT---TCS----------------
T ss_pred HHH------HHHHHH--------HHHHHHHHHHhCcCH-----HHHHHHHcC---CCC---CCc----------------
Confidence 543 233567 999999999999983 345444431 111 010
Q ss_pred HHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCC
Q psy11160 419 VCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMK 498 (598)
Q Consensus 419 li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~ 498 (598)
..+.|+++ +|++ |++.|++.+++.|. +.......+
T Consensus 265 ------------~~~~pg~g--------------~gg~---c~~kD~~~l~~~a~------------~~g~~~~~~---- 299 (467)
T 2q3e_A 265 ------------KFLKASVG--------------FGGS---CFQKDVLNLVYLCE------------ALNLPEVAR---- 299 (467)
T ss_dssp ------------SSCCCCSC--------------CCSS---SHHHHHHHHHHHHH------------HTTCHHHHH----
T ss_pred ------------cccCCCCC--------------CCCc---cHHHHHHHHHHHHH------------HcCCchHHH----
Confidence 11344432 4666 88877776654331 111110000
Q ss_pred CcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHH
Q psy11160 499 PAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTL 578 (598)
Q Consensus 499 ~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l 578 (598)
.+..+.++|+.|++++++++.+.+.+.++++||+||||||||||||+||||++.|++.|
T Consensus 300 ---------------------~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L 358 (467)
T 2q3e_A 300 ---------------------YWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYL 358 (467)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHhHHHHHHHHHHHhhcccCCCEEEEEeeccCCCCcchhhChHHHHHHHH
Confidence 03567789999999999999998766789999999999999999999999999999999
Q ss_pred HhCCCEEEEECCCCCC
Q psy11160 579 LYEGAKLKIYDPKLMS 594 (598)
Q Consensus 579 ~~~g~~v~~~DP~~~~ 594 (598)
.++|++|.+|||++..
T Consensus 359 ~~~g~~v~~~DP~~~~ 374 (467)
T 2q3e_A 359 MDEGAHLHIYDPKVPR 374 (467)
T ss_dssp HHTTCEEEEECSSSCH
T ss_pred HHCCCEEEEEcCccCH
Confidence 9999999999999753
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-22 Score=201.71 Aligned_cols=253 Identities=19% Similarity=0.200 Sum_probs=189.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+|.||..+|..|+. .|++|++|| ++++++.+.+.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~---------------------------~g~~V~~~~-~~~~~~~~~~~---------- 44 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLAR---------------------------AGHQLHVTT-IGPVADELLSL---------- 44 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHH---------------------------TTCEEEECC-SSCCCHHHHTT----------
T ss_pred CCEEEEEccCHHHHHHHHHHHh---------------------------CCCEEEEEc-CHHHHHHHHHc----------
Confidence 4799999999999999999999 899999999 99888877642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH---HHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR---MIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~ivv~~STv~~~ 161 (598)
++..+.++.++++++|+||+|+|.+. .++.++. .+.+.++++++|+..|+..|.
T Consensus 45 ---------g~~~~~~~~~~~~~~D~vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~ 101 (295)
T 1yb4_A 45 ---------GAVNVETARQVTEFADIIFIMVPDTP--------------QVEDVLFGEHGCAKTSLQGKTIVDMSSISPI 101 (295)
T ss_dssp ---------TCBCCSSHHHHHHTCSEEEECCSSHH--------------HHHHHHHSTTSSTTSCCTTEEEEECSCCCHH
T ss_pred ---------CCcccCCHHHHHhcCCEEEEECCCHH--------------HHHHHHhCchhHhhcCCCCCEEEECCCCCHH
Confidence 12345678888999999999997653 2555665 677778899999999999988
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+++++... +.+ .| ..++.+|
T Consensus 102 ~~~~l~~~-------------------------------------------------------~~~---~g--~~~~~~p 121 (295)
T 1yb4_A 102 ETKRFAQR-------------------------------------------------------VNE---MG--ADYLDAP 121 (295)
T ss_dssp HHHHHHHH-------------------------------------------------------HHT---TT--EEEEECC
T ss_pred HHHHHHHH-------------------------------------------------------HHH---cC--CeEEEcc
Confidence 88766541 221 11 3345566
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
.+..+..+..+.. .+++|++. ++++.++++|+.++. ..+++++.+.+..+|+++|.+....+.+++|+..+
T Consensus 122 ~~~~~~~a~~g~~---~~~~~~~~-----~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l 192 (295)
T 1yb4_A 122 VSGGEIGAREGTL---SIMVGGEQ-----KVFDRVKPLFDILGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALVF 192 (295)
T ss_dssp EESHHHHHHHTCE---EEEEESCH-----HHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHcCCe---EEEECCCH-----HHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543222222221 36678742 578889999998873 45567788999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 322 CEATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
+++.|++..++.+++.....-++ .++ +..+||...++.||+.++.+.+++.|++ .+.+.+.++++.
T Consensus 193 ~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 268 (295)
T 1yb4_A 193 ASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNT 268 (295)
T ss_dssp HHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 99999999999999987642111 112 3457889999999999999999999987 334444444443
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-21 Score=197.59 Aligned_cols=254 Identities=15% Similarity=0.170 Sum_probs=187.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.++|..|++ .|++|++||+++++++.+++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~---------------------------~g~~V~~~~~~~~~~~~~~~~----------- 42 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMK---------------------------HGYPLIIYDVFPDACKEFQDA----------- 42 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHH---------------------------TTCCEEEECSSTHHHHHHHTT-----------
T ss_pred CeEEEEeccHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHc-----------
Confidence 589999999999999999999 899999999999999988752
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHH---HHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARM---IAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~ivv~~STv~~~~ 162 (598)
+++.++++.++++++|+||+|||.|. .++.++.. +.+.++++++||..||+.+.+
T Consensus 43 --------g~~~~~~~~~~~~~~Dvvi~~vp~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~ 100 (296)
T 2gf2_A 43 --------GEQVVSSPADVAEKADRIITMLPTSI--------------NAIEAYSGANGILKKVKKGSLLIDSSTIDPAV 100 (296)
T ss_dssp --------TCEECSSHHHHHHHCSEEEECCSSHH--------------HHHHHHHSTTSGGGTCCTTCEEEECSCCCHHH
T ss_pred --------CCeecCCHHHHHhcCCEEEEeCCCHH--------------HHHHHHhCchhHHhcCCCCCEEEECCCCCHHH
Confidence 24567788888999999999997653 34555554 345678899999999999988
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
.+++... +.+ .+ ..+..+|.
T Consensus 101 ~~~~~~~-------------------------------------------------------~~~---~g--~~~~~~p~ 120 (296)
T 2gf2_A 101 SKELAKE-------------------------------------------------------VEK---MG--AVFMDAPV 120 (296)
T ss_dssp HHHHHHH-------------------------------------------------------HHH---TT--CEEEECCE
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CEEEEcCC
Confidence 8766541 111 11 12344554
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
...+..+..... .+++|+++ ++++.++++|+.++. ..+.++..+.+...|+++|.+.+..+.+++|+..++
T Consensus 121 ~~g~~~a~~~~~---~~~~~~~~-----~~~~~v~~l~~~~g~-~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~ 191 (296)
T 2gf2_A 121 SGGVGAARSGNL---TFMVGGVE-----DEFAAAQELLGCMGS-NVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLG 191 (296)
T ss_dssp ESHHHHHHHTCE---EEEEESCG-----GGHHHHHHHHTTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHhcCcE---EEEeCCCH-----HHHHHHHHHHHHHcC-CeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432211111111 35677754 467889999998873 455567788999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCcccc---------ccc-------cccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHH
Q psy11160 323 EATGADVSEVAKAVGLDSRIG---------AKF-------LQASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLY 385 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~---------~~~-------l~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i 385 (598)
++.|++.+++.+++......+ +.. -+..+||...++.||+..+.+++++.|++ .+.+.+.+++
T Consensus 192 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~ 271 (296)
T 2gf2_A 192 IRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIY 271 (296)
T ss_dssp HHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 999999999999988643110 001 13346789999999999999999999987 3444444555
Q ss_pred HHH
Q psy11160 386 ESL 388 (598)
Q Consensus 386 ~~~ 388 (598)
+.+
T Consensus 272 ~~~ 274 (296)
T 2gf2_A 272 RMM 274 (296)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=214.24 Aligned_cols=209 Identities=14% Similarity=0.169 Sum_probs=168.3
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+|+|+|||+|.||.+||..|++ .||+|++||+++++++.+.+....
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~~g~~------ 49 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMND---------------------------HGFVVCAFNRTVSKVDDFLANEAK------ 49 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSTHHHHHHHHTTTT------
T ss_pred CCCEEEEEChhHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHhcccC------
Confidence 35799999999999999999999 899999999999999998753110
Q ss_pred HHHHhhhcCCceEEecCHHHHhc---cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ---KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~---~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
..++..+.+++++++ ++|+||+|||++. .++++++++.+.++++++||+.||+.|
T Consensus 50 --------g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~--------------~v~~vl~~l~~~L~~g~iIId~st~~~ 107 (484)
T 4gwg_A 50 --------GTKVVGAQSLKEMVSKLKKPRRIILLVKAGQ--------------AVDDFIEKLVPLLDTGDIIIDGGNSEY 107 (484)
T ss_dssp --------TSSCEECSSHHHHHHTBCSSCEEEECSCSSH--------------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred --------CCceeccCCHHHHHhhccCCCEEEEecCChH--------------HHHHHHHHHHHhcCCCCEEEEcCCCCc
Confidence 124566788888776 5999999998752 477888999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
.++++++. .+.+ .| +.++.+
T Consensus 108 ~~t~~~~~-------------------------------------------------------~l~~---~G--i~fvd~ 127 (484)
T 4gwg_A 108 RDTTRRCR-------------------------------------------------------DLKA---KG--ILFVGS 127 (484)
T ss_dssp HHHHHHHH-------------------------------------------------------HHHH---TT--CEEEEE
T ss_pred hHHHHHHH-------------------------------------------------------HHHh---hc--cccccC
Confidence 99876654 1222 12 345666
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCce-------EEecCchhHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH-------ILTTNTWSSELSKLAANAFLAQRIS 313 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~-------v~~~~~~~Ae~~Kl~~N~~~~~~ia 313 (598)
|.+..+-.+.++ | .+|+||+. ++++.++++|+.++. .. +++|+.++|+.+|+++|.+.+..++
T Consensus 128 pVsGg~~gA~~G---~-~im~GG~~-----ea~~~v~pll~~ig~-~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~ 197 (484)
T 4gwg_A 128 GVSGGEEGARYG---P-SLMPGGNK-----EAWPHIKTIFQGIAA-KVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQ 197 (484)
T ss_dssp EEESHHHHHHHC---C-EEEEEECG-----GGHHHHHHHHHHHSC-BCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHhcC---C-eeecCCCH-----HHHHHHHHHHHHhcC-cccCCCceEEEECCccHHHHHHHHHHHHHHHHHH
Confidence 766543323222 2 68999975 578999999999874 33 5678899999999999999999999
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHc
Q psy11160 314 SINSLSAVCEA-TGADVSEVAKAVG 337 (598)
Q Consensus 314 ~~nE~~~la~~-~gid~~ev~~~l~ 337 (598)
+++|+..++++ +|+|+.++.+++.
T Consensus 198 ~iaEa~~l~~~~~Gld~~~l~~v~~ 222 (484)
T 4gwg_A 198 LICEAYHLMKDVLGMAQDEMAQAFE 222 (484)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999 9999999999873
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=195.71 Aligned_cols=256 Identities=16% Similarity=0.161 Sum_probs=187.2
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
..+|+|+|||+|.||..+|..|+. .|++|++||+++++.+.+.+.
T Consensus 28 ~~~~~I~iIG~G~mG~~~a~~l~~---------------------------~g~~V~~~~~~~~~~~~~~~~-------- 72 (316)
T 2uyy_A 28 PTDKKIGFLGLGLMGSGIVSNLLK---------------------------MGHTVTVWNRTAEKCDLFIQE-------- 72 (316)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSGGGGHHHHHT--------
T ss_pred CCCCeEEEEcccHHHHHHHHHHHh---------------------------CCCEEEEEeCCHHHHHHHHHc--------
Confidence 345899999999999999999999 899999999999988877641
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHH---HHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMI---AEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~ivv~~STv~ 159 (598)
++..+.++.++++++|+||+|||+|. .++.++..+ .+.+.++++||..||+.
T Consensus 73 -----------g~~~~~~~~~~~~~~DvVi~av~~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~ 127 (316)
T 2uyy_A 73 -----------GARLGRTPAEVVSTCDITFACVSDPK--------------AAKDLVLGPSGVLQGIRPGKCYVDMSTVD 127 (316)
T ss_dssp -----------TCEECSCHHHHHHHCSEEEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred -----------CCEEcCCHHHHHhcCCEEEEeCCCHH--------------HHHHHHcCchhHhhcCCCCCEEEECCCCC
Confidence 23456778888999999999998653 355555543 46788999999999999
Q ss_pred hHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEE
Q psy11160 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILS 239 (598)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~ 239 (598)
+.+.+++... +.. .+ ..++.
T Consensus 128 ~~~~~~l~~~-------------------------------------------------------~~~---~~--~~~v~ 147 (316)
T 2uyy_A 128 ADTVTELAQV-------------------------------------------------------IVS---RG--GRFLE 147 (316)
T ss_dssp HHHHHHHHHH-------------------------------------------------------HHH---TT--CEEEE
T ss_pred HHHHHHHHHH-------------------------------------------------------HHH---cC--CEEEE
Confidence 9888766542 111 01 12344
Q ss_pred CCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLS 319 (598)
Q Consensus 240 ~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~ 319 (598)
+|.+..+.....+. ..+++||+. ++++.++++|+.++. ..+..++.+.+...|++.|.+....+.+++|+.
T Consensus 148 ~p~~g~~~~~~~g~---~~~~~~g~~-----~~~~~v~~ll~~~g~-~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~ 218 (316)
T 2uyy_A 148 APVSGNQQLSNDGM---LVILAAGDR-----GLYEDCSSCFQAMGK-TSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGL 218 (316)
T ss_dssp CCEESCHHHHHHTC---EEEEEEECH-----HHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCChhHHhhCC---EEEEeCCCH-----HHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45433221111111 135567742 577888999998873 344566789999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 320 AVCEATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 320 ~la~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
.++++.|++.+++.+++......++ .++ ++.+||...++.||+..+.+.+++.|++ .+.+.+.++++.
T Consensus 219 ~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~ 296 (316)
T 2uyy_A 219 TLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKR 296 (316)
T ss_dssp HHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999886542111 111 3567888899999999999999999987 233334444443
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-24 Score=228.31 Aligned_cols=215 Identities=21% Similarity=0.298 Sum_probs=147.5
Q ss_pred CchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy11160 247 GTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATG 326 (598)
Q Consensus 247 G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~g 326 (598)
|..+...++|||+..|. +++.+. . .+++.+|.. ..+..+.+..+|..... . .-.++
T Consensus 165 ~~~f~v~~~PErl~eG~--------a~~d~~---~----~~riViG~~-~~~a~~~~~~ly~~~~~----~----~~~~~ 220 (444)
T 3vtf_A 165 GVKFSVASNPEFLREGS--------ALEDFF---K----PDRIVIGAG-DERAASFLLDVYKAVDA----P----KLVMK 220 (444)
T ss_dssp TCCCEEEECCCCCCTTS--------HHHHHH---S----CSCEEEEES-SHHHHHHHHHHTTTSCS----C----EEEEC
T ss_pred CCCceeecCcccccCCc--------cccccc---c----CCcEEEcCC-CHHHHHHHHHHHhccCC----C----EEEec
Confidence 34566788999998773 333222 2 245554421 12223333333322110 0 01245
Q ss_pred CCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccC
Q psy11160 327 ADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKK 406 (598)
Q Consensus 327 id~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~ 406 (598)
...+|++|+++|.+| +.+++| +|+|+.+|+++|++. .++++.+. .++|| |.
T Consensus 221 ~~~AE~~Kl~eN~~r------avnIa~--------~NEla~ice~~GiDv-----~eV~~a~~---~d~ri---g~---- 271 (444)
T 3vtf_A 221 PREAELVKYASNVFL------ALKISF--------ANEVGLLAKRLGVDT-----YRVFEAVG---LDKRI---GR---- 271 (444)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHTTCCH-----HHHHHHHH---TSTTS---CS----
T ss_pred hhHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHcCCCH-----HHHHHHhc---cCCCC---CC----
Confidence 677899999998766 567899 999999999999993 57777764 22332 21
Q ss_pred CCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhh
Q psy11160 407 NTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVT 486 (598)
Q Consensus 407 ~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ 486 (598)
..+.|+ +++||| |++.|++.++..|. +
T Consensus 272 ------------------------~~l~PG--------------~G~GG~---CipkD~~~L~~~a~------------~ 298 (444)
T 3vtf_A 272 ------------------------HYFGAG--------------LGFGGS---CFPKDTLAFIRFGE------------S 298 (444)
T ss_dssp ------------------------TTCCCS--------------SCCCTT---THHHHHHHHHHHHH------------H
T ss_pred ------------------------CCCCCC--------------CCCCCc---ccCcCHHHHHHHHH------------h
Confidence 012233 347888 99999987754331 0
Q ss_pred ccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCc
Q psy11160 487 LDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDT 566 (598)
Q Consensus 487 ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~ 566 (598)
+. ..+.+ .++++++|+.||+++++++.+.+ +.++++||+|||||||+||||+
T Consensus 299 ~g--------~~~~l-------------------i~a~~~iN~~~~~~vv~~l~~~~-~~l~g~~V~vlGlafK~~tdD~ 350 (444)
T 3vtf_A 299 LG--------LEMAI-------------------SKAVLRVNEYMPRYAVQLLEERL-GGLRGRHVGVLGLAFKPNTDDV 350 (444)
T ss_dssp TT--------CCCHH-------------------HHHHHHHHHHHHHHHHHHHHHHH-TCCTTCEEEEECCSSSSSCCCC
T ss_pred cC--------CCHHH-------------------HHhhHHHHHHHHHHHHHHHHHHc-cccCCCEEEEEeeecCCCCCcc
Confidence 00 01111 14678899999999999998877 4689999999999999999999
Q ss_pred CCCchHHHHHHHHhCCCEEEEECCCCCCc
Q psy11160 567 RESPAIHVCRTLLYEGAKLKIYDPKLMSR 595 (598)
Q Consensus 567 R~sp~~~i~~~l~~~g~~v~~~DP~~~~~ 595 (598)
||||++.|++.|.++|++|.+|||+++++
T Consensus 351 ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~ 379 (444)
T 3vtf_A 351 RESRGVEVARLLLERGARVYVHDPMAMEK 379 (444)
T ss_dssp TTCHHHHHHHHHHHTTCEEEEECSSTHHH
T ss_pred ccCcHHHHHHHHHHCCCEEEEECCCCChH
Confidence 99999999999999999999999998654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-20 Score=186.64 Aligned_cols=250 Identities=16% Similarity=0.166 Sum_probs=182.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||..+|..|+. |++|++||+++++.+.+.+.
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~----------------------------g~~V~~~~~~~~~~~~~~~~----------- 42 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR----------------------------RFPTLVWNRTFEKALRHQEE----------- 42 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT----------------------------TSCEEEECSSTHHHHHHHHH-----------
T ss_pred CeEEEEcccHHHHHHHHHHhC----------------------------CCeEEEEeCCHHHHHHHHHC-----------
Confidence 689999999999999998865 78999999999998887641
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
+...++ +.++++++|+||+|+|++. .++.+++.+.+.++++++|+..|+..+.+++.
T Consensus 43 --------g~~~~~-~~~~~~~~D~vi~~v~~~~--------------~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~ 99 (289)
T 2cvz_A 43 --------FGSEAV-PLERVAEARVIFTCLPTTR--------------EVYEVAEALYPYLREGTYWVDATSGEPEASRR 99 (289)
T ss_dssp --------HCCEEC-CGGGGGGCSEEEECCSSHH--------------HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHH
T ss_pred --------CCcccC-HHHHHhCCCEEEEeCCChH--------------HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHH
Confidence 112233 5567889999999987652 35667788888888999999999999888766
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
+... +.. .| ..++.+|.+..
T Consensus 100 l~~~-------------------------------------------------------~~~---~g--~~~~~~p~~~~ 119 (289)
T 2cvz_A 100 LAER-------------------------------------------------------LRE---KG--VTYLDAPVSGG 119 (289)
T ss_dssp HHHH-------------------------------------------------------HHT---TT--EEEEECCEESH
T ss_pred HHHH-------------------------------------------------------HHH---cC--CEEEEecCCCC
Confidence 6541 111 01 23344453321
Q ss_pred cCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy11160 246 EGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 325 (598)
Q Consensus 246 ~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~ 325 (598)
+..+..+ ...+++|++. +.++.++++| .++. ..+.+++.+.+..+|++.|.+....+.+++|+..++++.
T Consensus 120 ~~~~~~g---~~~~~~~~~~-----~~~~~~~~ll-~~g~-~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 189 (289)
T 2cvz_A 120 TSGAEAG---TLTVMLGGPE-----EAVERVRPFL-AYAK-KVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQ 189 (289)
T ss_dssp HHHHHHT---CEEEEEESCH-----HHHHHHGGGC-TTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhhC---CeEEEECCCH-----HHHHHHHHHH-hhcC-CeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111111 1135667642 5778889999 8763 345677788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCcc-------ccc-ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 326 GADVSEVAKAVGLDSR-------IGA-KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 326 gid~~ev~~~l~~~~r-------i~~-~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
|++.+++.+++..... .++ ..+ ++.+||...++.||+..+.+.+++.|++ .+.+.+.++++.
T Consensus 190 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~ 262 (289)
T 2cvz_A 190 GVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEM 262 (289)
T ss_dssp TCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 9999999999986542 112 232 3456888899999999999999999987 334444444443
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-21 Score=212.16 Aligned_cols=261 Identities=18% Similarity=0.218 Sum_probs=163.0
Q ss_pred cCCCCCchHHHHHHHHHHHHhcC---CceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCC
Q psy11160 181 QGRAADLKYVEAAARMIAEIATD---NKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNAD 257 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~---~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~ 257 (598)
..+.+||+|++++++.|++++++ +.+||.+||+|+|+|. +.+.+.++.. . ....|..+...++|+
T Consensus 90 ~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~---~~l~~~l~~~--~-------g~~~~~~~~v~~~Pe 157 (436)
T 1mv8_A 90 KNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVN---NVVIPLIEDC--S-------GKKAGVDFGVGTNPE 157 (436)
T ss_dssp TTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHH---HTHHHHHHHH--H-------SCCBTTTBEEEECCC
T ss_pred cCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchH---HHHHHHHHHh--c-------CcccCCcEEEEECcc
Confidence 35689999999999999999999 9999999999999964 3465533210 0 011123344567788
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHc
Q psy11160 258 RILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 258 rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~ 337 (598)
++..|. +.. .+.. ...+..+.. +.+..+.+..+|..... .+- ..++..+++.|++.
T Consensus 158 ~~~~G~--------~~~---~~~~----~~~iv~G~~-~~~~~~~~~~l~~~~~~-------~v~-~~~~~~ae~~Kl~~ 213 (436)
T 1mv8_A 158 FLREST--------AIK---DYDF----PPMTVIGEL-DKQTGDLLEEIYRELDA-------PII-RKTVEVAEMIKYTC 213 (436)
T ss_dssp CCCTTS--------HHH---HHHS----CSCEEEEES-SHHHHHHHHHHHTTSSS-------CEE-EEEHHHHHHHHHHH
T ss_pred cccccc--------cch---hccC----CCEEEEEcC-CHHHHHHHHHHHhccCC-------CEE-cCCHHHHHHHHHHH
Confidence 765442 221 2221 234444432 23344444444432110 000 12344567888887
Q ss_pred CCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHH
Q psy11160 338 LDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAI 417 (598)
Q Consensus 338 ~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l 417 (598)
|..+ ...++| +|++..+|++.|++. .++++.+.. ..++ |.++
T Consensus 214 N~~~------a~~ia~--------~nE~~~l~~~~Gid~-----~~v~~~~~~---~~r~---~~~~------------- 255 (436)
T 1mv8_A 214 NVWH------AAKVTF--------ANEIGNIAKAVGVDG-----REVMDVICQ---DHKL---NLSR------------- 255 (436)
T ss_dssp HHHH------HHHHHH--------HHHHHHHHHHTTSCH-----HHHHHHHTT---CTTT---TTSS-------------
T ss_pred HHHH------HHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHhcC---CCCC---CCcc-------------
Confidence 6543 223567 999999999999983 344444321 1110 0000
Q ss_pred HHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccC
Q psy11160 418 HVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMM 497 (598)
Q Consensus 418 ~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~ 497 (598)
..|.|.. ..|++ |+..|+..+++.+
T Consensus 256 -------------~~~~pg~--------------g~gg~---~~~kD~~~l~~~a------------------------- 280 (436)
T 1mv8_A 256 -------------YYMRPGF--------------AFGGS---CLPKDVRALTYRA------------------------- 280 (436)
T ss_dssp -------------TTCSCCS--------------CCCSS---SHHHHHHHHHHHH-------------------------
T ss_pred -------------cCCCCcc--------------cccCc---CcHhhHHHHHHHH-------------------------
Confidence 0122321 24555 6655554433211
Q ss_pred CCcEEEecCCCCChhhhhhccce---eeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHH
Q psy11160 498 KPAYIFDGRKILNHDALLDIGFN---VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHV 574 (598)
Q Consensus 498 ~~~iI~D~r~i~d~~~~~~~G~~---y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i 574 (598)
++.|+. .+.+.++|+.||+++++++.+. ++++|+|||||||+||||+||||++.|
T Consensus 281 -----------------~~~g~~~pl~~~v~~in~~~~~~~~~~~~~~-----~~~~v~vlGlafK~~~~d~r~s~~~~i 338 (436)
T 1mv8_A 281 -----------------SQLDVEHPMLGSLMRSNSNQVQKAFDLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVEL 338 (436)
T ss_dssp -----------------HHTTCCCTTGGGHHHHHHHHHHHHHHHHTTS-----SCCEEEEECCSSSTTCCCCTTCHHHHH
T ss_pred -----------------HHcCCCcHHHHHHHHHHhHhHHHHHHHHHHh-----cCCEEEEEccccCCCCCccccCcHHHH
Confidence 011111 2567888999999999998743 689999999999999999999999999
Q ss_pred HHHHHhCCCEEEEECCCC
Q psy11160 575 CRTLLYEGAKLKIYDPKL 592 (598)
Q Consensus 575 ~~~l~~~g~~v~~~DP~~ 592 (598)
++.|.++|++|.+|||++
T Consensus 339 ~~~L~~~g~~v~~~DP~~ 356 (436)
T 1mv8_A 339 AEMLIGKGYELRIFDRNV 356 (436)
T ss_dssp HHHHHHTTCEEEEECHHH
T ss_pred HHHHHHCCCEEEEECCCC
Confidence 999999999999999985
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-19 Score=196.06 Aligned_cols=246 Identities=13% Similarity=0.103 Sum_probs=182.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|||+|.||.+||..|++ +|++|++||+++++++.++++..+ +
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~---------------------------~G~~V~v~dr~~~~~~~l~~~~~~----~-- 56 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAAD---------------------------HGFTVCAYNRTQSKVDHFLANEAK----G-- 56 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSSHHHHHHHHTTTT----T--
T ss_pred CCCEEEEeeHHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHccccc----C--
Confidence 3589999999999999999999 899999999999999998864221 0
Q ss_pred HHHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+++.+.++++++++ +|+||+|||++. .++++++++.+.++++++||+.||+.+.
T Consensus 57 --------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~--------------~v~~vl~~l~~~l~~g~iIId~s~~~~~ 114 (497)
T 2p4q_A 57 --------KSIIGATSIEDFISKLKRPRKVMLLVKAGA--------------PVDALINQIVPLLEKGDIIIDGGNSHFP 114 (497)
T ss_dssp --------SSEECCSSHHHHHHTSCSSCEEEECCCSSH--------------HHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred --------CCeEEeCCHHHHHhcCCCCCEEEEEcCChH--------------HHHHHHHHHHHhCCCCCEEEECCCCChh
Confidence 246778889888877 999999998752 4778889999999999999999999998
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+++++... +.+ .| +.++..|
T Consensus 115 ~~~~l~~~-------------------------------------------------------l~~---~g--~~~v~~p 134 (497)
T 2p4q_A 115 DSNRRYEE-------------------------------------------------------LKK---KG--ILFVGSG 134 (497)
T ss_dssp HHHHHHHH-------------------------------------------------------HHH---TT--CEEEEEE
T ss_pred HHHHHHHH-------------------------------------------------------HHH---cC--CceeCCC
Confidence 88766541 222 12 2334455
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCc------eEEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRK------HILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~------~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
....+..+..+ +.+++||+. ++++.++++|+.++. . ..+++..+.+..+|+++|.+.+..+..+
T Consensus 135 Vsgg~~~a~~G----~~im~gg~~-----e~~~~v~~ll~~~g~-~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~l 204 (497)
T 2p4q_A 135 VSGGEEGARYG----PSLMPGGSE-----EAWPHIKNIFQSISA-KSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLI 204 (497)
T ss_dssp EESHHHHHHHC----CEEEEEECG-----GGHHHHHHHHHHHSC-EETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChhHhhcC----CeEEecCCH-----HHHHHHHHHHHHhcC-ccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHH
Confidence 44332222221 258889864 478889999999874 3 3556778999999999999999999999
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHc---CCccccc-------ccc--ccCccccccchh-----hhHH-HHHHHHHHcCCh
Q psy11160 316 NSLSAVCEA-TGADVSEVAKAVG---LDSRIGA-------KFL--QASVGFGGSCFQ-----KDIL-NLVYICECLNLP 375 (598)
Q Consensus 316 nE~~~la~~-~gid~~ev~~~l~---~~~ri~~-------~~l--~~~~gfgg~cl~-----KD~~-~L~~~a~~~G~~ 375 (598)
+|+..++++ +|++..++.+++. ...--++ .+. ++..+|-...+. ||+. ...+.+.++|++
T Consensus 205 aEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~ 283 (497)
T 2p4q_A 205 CEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMP 283 (497)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCC
Confidence 999999999 6999999999984 2211011 011 122224444444 7765 677899999986
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=187.72 Aligned_cols=218 Identities=14% Similarity=0.126 Sum_probs=163.5
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~ 82 (598)
++|||+|||+|.||.++|..|++ +|++|++||+++++++.+++ +..+.+.|+
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~---------------------------~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g 80 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLAR---------------------------KGQKVRLWSYESDHVDEMQAEGVNNRYLPN 80 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEECSCHHHHHHHHHHSSBTTTBTT
T ss_pred cCCeEEEECccHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHcCCCcccCCC
Confidence 45799999999999999999999 89999999999999999985 666667776
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC-CchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST-VPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST-v~~~ 161 (598)
+. ...++++++|+.+++++||+||++||+. .+++++++|.+.++++++||..+. +.++
T Consensus 81 ~~------l~~~i~~t~d~~ea~~~aDvVilaVp~~---------------~~~~vl~~i~~~l~~~~ivvs~~kGi~~~ 139 (356)
T 3k96_A 81 YP------FPETLKAYCDLKASLEGVTDILIVVPSF---------------AFHEVITRMKPLIDAKTRIAWGTKGLAKG 139 (356)
T ss_dssp CC------CCTTEEEESCHHHHHTTCCEEEECCCHH---------------HHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred Cc------cCCCeEEECCHHHHHhcCCEEEECCCHH---------------HHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence 53 2356889999998999999999998753 588899999999999998876655 6666
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+ +.+.. ++++.+ .+..+.+++.|
T Consensus 140 t-~~~se-------------------------------------------------------~i~~~l-~~~~~~vlsgP 162 (356)
T 3k96_A 140 S-RLLHE-------------------------------------------------------VVATEL-GQVPMAVISGP 162 (356)
T ss_dssp T-BCHHH-------------------------------------------------------HHHHHH-CSCCEEEEESS
T ss_pred c-cCHHH-------------------------------------------------------HHHHHc-CCCCEEEEECc
Confidence 5 33322 122211 12346688899
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHH-----------------HHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSEL-----------------SKLAA 304 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~-----------------~Kl~~ 304 (598)
.+..+.. ...|..+++|+.+. +..+.++++|....- ..+...+...+|. +|+..
T Consensus 163 ~~a~ev~----~g~pt~~via~~~~----~~~~~v~~lf~~~~~-rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~ 233 (356)
T 3k96_A 163 SLATEVA----ANLPTAVSLASNNS----QFSKDLIERLHGQRF-RVYKNDDMIGVELCGSVKNILAIATGISDGLKLGS 233 (356)
T ss_dssp CCHHHHH----TTCCEEEEEEESCH----HHHHHHHHHHCCSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred cHHHHHH----cCCCeEEEEecCCH----HHHHHHHHHhCCCCe-eEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 8865432 24566777777553 567888999985431 2233445444444 56777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy11160 305 NAFLAQRISSINSLSAVCEATGADVSEVAKA 335 (598)
Q Consensus 305 N~~~~~~ia~~nE~~~la~~~gid~~ev~~~ 335 (598)
|+..++...+++|+.++|+++|+|+..+..+
T Consensus 234 N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl 264 (356)
T 3k96_A 234 NARAALITRGLTEMGRLVSVFGGKQETLTGL 264 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHTST
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHhhccc
Confidence 8888999999999999999999999987743
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=188.53 Aligned_cols=208 Identities=14% Similarity=0.152 Sum_probs=163.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.+||..|++ +|++|++||+++++++.+++...
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~---------------------------~G~~V~v~~r~~~~~~~l~~~~~-------- 59 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIES---------------------------RGYTVSIFNRSREKTEEVIAENP-------- 59 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEECSSHHHHHHHHHHST--------
T ss_pred CCeEEEEccHHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHhhCC--------
Confidence 4689999999999999999999 89999999999999998875210
Q ss_pred HHHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
..+++.++++++++++ +|+||+|||++. .++++++++.+.++++++||+.||..+.
T Consensus 60 -------~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~--------------~v~~vl~~l~~~l~~g~iIId~s~g~~~ 118 (480)
T 2zyd_A 60 -------GKKLVPYYTVKEFVESLETPRRILLMVKAGA--------------GTDAAIDSLKPYLDKGDIIIDGGNTFFQ 118 (480)
T ss_dssp -------TSCEEECSSHHHHHHTBCSSCEEEECSCSSS--------------HHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred -------CCCeEEeCCHHHHHhCCCCCCEEEEECCCHH--------------HHHHHHHHHHhhcCCCCEEEECCCCCHH
Confidence 0247788899888887 999999998753 4778888999999999999999999998
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
.++++.. .+.+ .| +.++.+|
T Consensus 119 ~t~~l~~-------------------------------------------------------~l~~---~g--~~~v~~p 138 (480)
T 2zyd_A 119 DTIRRNR-------------------------------------------------------ELSA---EG--FNFIGTG 138 (480)
T ss_dssp HHHHHHH-------------------------------------------------------HHHH---TT--CEEEEEE
T ss_pred HHHHHHH-------------------------------------------------------HHHH---CC--CCeeCCc
Confidence 8866643 1222 12 2334455
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC--c----eEEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR--K----HILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~--~----~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
....+..+.. -| .+++||+. ++.+.++++|+.++.. + ..+++..+.+..+|+++|.+.+..+..+
T Consensus 139 v~gg~~~a~~---g~-~i~~gg~~-----~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~l 209 (480)
T 2zyd_A 139 VSGGEEGALK---GP-SIMPGGQK-----EAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLI 209 (480)
T ss_dssp EESHHHHHHH---CC-EEEEESCH-----HHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHhHHhc---CC-eEEecCCH-----HHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHH
Confidence 5432222212 22 48889853 6789999999998742 0 4567788999999999999999999999
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHc
Q psy11160 316 NSLSAVCEA-TGADVSEVAKAVG 337 (598)
Q Consensus 316 nE~~~la~~-~gid~~ev~~~l~ 337 (598)
+|+..++++ +|++..++.+++.
T Consensus 210 aEa~~l~~~~lGl~~~~~~~l~~ 232 (480)
T 2zyd_A 210 AEAYSLLKGGLNLTNEELAQTFT 232 (480)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999 7999999999883
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=183.18 Aligned_cols=245 Identities=13% Similarity=0.120 Sum_probs=177.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+|||+|.||.++|..|++ .|++|++||+++++++.++++..+ +
T Consensus 3 m~IgvIG~G~mG~~lA~~La~---------------------------~G~~V~v~dr~~~~~~~l~~~~~~----g--- 48 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMND---------------------------HGFVVCAFNRTVSKVDDFLANEAK----G--- 48 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSTHHHHHHHHTTTT----T---
T ss_pred CeEEEEChHHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHhcccc----C---
Confidence 689999999999999999999 899999999999999998864211 1
Q ss_pred HHhhhcCCceEEecCHHHHhc---cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQ---KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~---~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.++..+++++++++ ++|+||+|||++. .++++++++.+.++++++||..||..+..
T Consensus 49 -------~gi~~~~~~~e~v~~l~~aDvVilaVp~~~--------------~v~~vl~~l~~~l~~g~iII~~s~~~~~~ 107 (482)
T 2pgd_A 49 -------TKVLGAHSLEEMVSKLKKPRRIILLVKAGQ--------------AVDNFIEKLVPLLDIGDIIIDGGNSEYRD 107 (482)
T ss_dssp -------SSCEECSSHHHHHHHBCSSCEEEECSCTTH--------------HHHHHHHHHHHHCCTTCEEEECSCCCHHH
T ss_pred -------CCeEEeCCHHHHHhhccCCCEEEEeCCChH--------------HHHHHHHHHHhhcCCCCEEEECCCCCHHH
Confidence 24667888888774 8999999998752 47778889999999999999999998887
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++.. .+.+ .| +.++..|.
T Consensus 108 ~~~l~~-------------------------------------------------------~l~~---~g--~~~v~~pv 127 (482)
T 2pgd_A 108 TMRRCR-------------------------------------------------------DLKD---KG--ILFVGSGV 127 (482)
T ss_dssp HHHHHH-------------------------------------------------------HHHH---TT--CEEEEEEE
T ss_pred HHHHHH-------------------------------------------------------HHHH---cC--CeEeCCCC
Confidence 765543 1221 12 22334454
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCce-------EEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH-------ILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~-------v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
+..+-. ...++.+++||+. ++.+.++++|+.++. .. .+++..+.++.+|+++|.+.+..+.++
T Consensus 128 ~g~~~~----a~~g~~i~~gg~~-----e~~~~v~~ll~~~g~-~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i 197 (482)
T 2pgd_A 128 SGGEDG----ARYGPSLMPGGNK-----EAWPHIKAIFQGIAA-KVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLI 197 (482)
T ss_dssp ESHHHH----HHHCCEEEEEECT-----TTHHHHHHHHHHHSC-BCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhh----hccCCeEEeCCCH-----HHHHHHHHHHHHhhh-hccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHH
Confidence 322111 1122257888864 467888999998874 22 345678899999999999999999999
Q ss_pred HHHHHHHHHc-CCCHHHHHHHHc--CCcccccc-------cc---ccCccccccch------hhhHHHHHHHHHHcCCh
Q psy11160 316 NSLSAVCEAT-GADVSEVAKAVG--LDSRIGAK-------FL---QASVGFGGSCF------QKDILNLVYICECLNLP 375 (598)
Q Consensus 316 nE~~~la~~~-gid~~ev~~~l~--~~~ri~~~-------~l---~~~~gfgg~cl------~KD~~~L~~~a~~~G~~ 375 (598)
+|+..++++. |++..++.+++. +....++. .+ ++..+|-..-+ .+|...+.+.|+++|++
T Consensus 198 ~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~ 276 (482)
T 2pgd_A 198 CEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVP 276 (482)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHHhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCC
Confidence 9999999999 999999999985 11111110 01 11122211112 34566788999999986
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=168.70 Aligned_cols=237 Identities=10% Similarity=0.081 Sum_probs=164.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC--CHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK--SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~--~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.||.++|..|++ .|++|++||+ ++++++.+.+.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~---------------------------~g~~V~~~~~~~~~~~~~~~~~~--------- 44 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRS---------------------------RGVEVVTSLEGRSPSTIERARTV--------- 44 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHH---------------------------TTCEEEECCTTCCHHHHHHHHHH---------
T ss_pred CeEEEEechHHHHHHHHHHHH---------------------------CCCeEEEeCCccCHHHHHHHHHC---------
Confidence 589999999999999999999 8999999999 88888776531
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+++ +++.+++++||+||+|||++. .++. +..+.+.+++ +|++.||+.+.++
T Consensus 45 ----------g~~--~~~~~~~~~aDvvi~~v~~~~--------------~~~~-~~~~~~~~~~--~vi~~s~~~~~~~ 95 (264)
T 1i36_A 45 ----------GVT--ETSEEDVYSCPVVISAVTPGV--------------ALGA-ARRAGRHVRG--IYVDINNISPETV 95 (264)
T ss_dssp ----------TCE--ECCHHHHHTSSEEEECSCGGG--------------HHHH-HHHHHTTCCS--EEEECSCCCHHHH
T ss_pred ----------CCc--CCHHHHHhcCCEEEEECCCHH--------------HHHH-HHHHHHhcCc--EEEEccCCCHHHH
Confidence 123 556678899999999997653 1222 3567776766 8889999999888
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.+...+ .. .| ++.+|..
T Consensus 96 ~~l~~~~-------------------------------------------------------~~---~g----~~~~~v~ 113 (264)
T 1i36_A 96 RMASSLI-------------------------------------------------------EK---GG----FVDAAIM 113 (264)
T ss_dssp HHHHHHC-------------------------------------------------------SS---SE----EEEEEEC
T ss_pred HHHHHHH-------------------------------------------------------hh---CC----eeeeeee
Confidence 7665421 11 01 1223332
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
..+..+.. -.+ +++||++ . +.+++ |+.++. .++.+++ .+.++.+|++.|++....+.+++|+..++
T Consensus 114 ~~~~~~~~--g~~--~~~~g~~------~-~~~~~-l~~~g~-~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la 180 (264)
T 1i36_A 114 GSVRRKGA--DIR--IIASGRD------A-EEFMK-LNRYGL-NIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAA 180 (264)
T ss_dssp SCHHHHGG--GCE--EEEESTT------H-HHHHG-GGGGTC-EEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccc--CCe--EEecCCc------H-HHhhh-HHHcCC-eeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111 122 5678764 2 66778 888863 3455665 79999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCcc--c---ccccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q psy11160 323 EATGADVSEVAKAVGLDSR--I---GAKFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYES 387 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~r--i---~~~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~ 387 (598)
++.|+|.+ +.+.+..+.. . +..++ +..+|+. ..||+..+.+.+++. ++ .+.+.+.++++.
T Consensus 181 ~~~G~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~ 248 (264)
T 1i36_A 181 HRLGLEED-VLEMLEYTEGNDFRESAISRLKSSCIHARR---RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDK 248 (264)
T ss_dssp HHTTCHHH-HHHHHHTTSCSSTHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHH
T ss_pred HHcCCcHH-HHHHHHHhcCccHHHHHHHHhcCCCCcchh---hHHHHHHHHHHHHHh-cCchHHHHHHHHHHH
Confidence 99999985 8888876531 0 01111 2233443 689999999999999 86 244444444444
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-17 Score=179.37 Aligned_cols=247 Identities=14% Similarity=0.117 Sum_probs=176.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc--CCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS--NKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~--~~~~~~e~~~ 83 (598)
|+|+|||+|.||.++|..|++ .|++|++||+++++++.+++ |.. +.
T Consensus 2 MkIgVIG~G~mG~~lA~~La~---------------------------~G~~V~v~dr~~~~~~~l~~~~g~~----~~- 49 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAE---------------------------KGFKVAVFNRTYSKSEEFMKANASA----PF- 49 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSHHHHHHHHHHTTTS----TT-
T ss_pred CEEEEEChHHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHhcCCC----CC-
Confidence 589999999999999999999 89999999999999998875 321 11
Q ss_pred HHHHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
..++..++++++++++ +|+||+|||++. .++++++++.+.++++++||..|+..+
T Consensus 50 --------~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~--------------~v~~vl~~l~~~l~~g~iIId~sng~~ 107 (478)
T 1pgj_A 50 --------AGNLKAFETMEAFAASLKKPRKALILVQAGA--------------ATDSTIEQLKKVFEKGDILVDTGNAHF 107 (478)
T ss_dssp --------GGGEEECSCHHHHHHHBCSSCEEEECCCCSH--------------HHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred --------CCCeEEECCHHHHHhcccCCCEEEEecCChH--------------HHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence 0236778889888774 999999998752 467788899999999999999999988
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
..++++... +.+ .| +.++..
T Consensus 108 ~~~~~l~~~-------------------------------------------------------l~~---~g--~~~v~~ 127 (478)
T 1pgj_A 108 KDQGRRAQQ-------------------------------------------------------LEA---AG--LRFLGM 127 (478)
T ss_dssp HHHHHHHHH-------------------------------------------------------HHT---TT--CEEEEE
T ss_pred HHHHHHHHH-------------------------------------------------------HHH---CC--CeEEEe
Confidence 877665531 211 11 122333
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCc------eEEecCchhHHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRK------HILTTNTWSSELSKLAANAFLAQRISS 314 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~------~v~~~~~~~Ae~~Kl~~N~~~~~~ia~ 314 (598)
|....+-.+. ..| .+++||+. ++.+.++++|+.++... ..+++..+.+..+|+++|.+.+..+.+
T Consensus 128 pv~gg~~~a~---~g~-~i~~gg~~-----~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~ 198 (478)
T 1pgj_A 128 GISGGEEGAR---KGP-AFFPGGTL-----SVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQI 198 (478)
T ss_dssp EEESHHHHHH---HCC-EEEEEECH-----HHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCHHHHh---cCC-eEeccCCH-----HHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHH
Confidence 4322111111 112 47788853 57888999999987421 355677899999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHc----CCcc------cccccc-ccC-cc-ccccchh-----hhH-HHHHHHHHHcCCh
Q psy11160 315 INSLSAVCEATGADVSEVAKAVG----LDSR------IGAKFL-QAS-VG-FGGSCFQ-----KDI-LNLVYICECLNLP 375 (598)
Q Consensus 315 ~nE~~~la~~~gid~~ev~~~l~----~~~r------i~~~~l-~~~-~g-fgg~cl~-----KD~-~~L~~~a~~~G~~ 375 (598)
++|+..++++.|++..++.+++. .... +....+ +-. .| +-...+. ||. ..+.+.|+++|++
T Consensus 199 i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~ 278 (478)
T 1pgj_A 199 WGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVP 278 (478)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhchhhhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCC
Confidence 99999999999999999999885 2211 101111 111 12 2222222 444 6899999999986
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=179.00 Aligned_cols=246 Identities=11% Similarity=0.126 Sum_probs=176.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|+|||+|.||.++|..|++ .|++|++||+++++++.+.+...
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~~~~-------- 49 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVES---------------------------RGYTVAIYNRTTSKTEEVFKEHQ-------- 49 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSHHHHHHHHHHTT--------
T ss_pred CCcEEEEeeHHHHHHHHHHHHh---------------------------CCCEEEEEcCCHHHHHHHHHhCc--------
Confidence 3789999999999999999999 89999999999999998874210
Q ss_pred HHHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
..++..+.++++++++ +|+||+|||++. .+.++++++.+.++++++||..||..+.
T Consensus 50 -------~~gi~~~~s~~e~v~~l~~aDvVilavp~~~--------------~v~~vl~~l~~~l~~g~iiId~s~~~~~ 108 (474)
T 2iz1_A 50 -------DKNLVFTKTLEEFVGSLEKPRRIMLMVQAGA--------------ATDATIKSLLPLLDIGDILIDGGNTHFP 108 (474)
T ss_dssp -------TSCEEECSSHHHHHHTBCSSCEEEECCCTTH--------------HHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred -------CCCeEEeCCHHHHHhhccCCCEEEEEccCch--------------HHHHHHHHHHhhCCCCCEEEECCCCCHH
Confidence 0246778889888876 999999998752 4677888899999999999999999888
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
.++++... +.+ .| +.++..|
T Consensus 109 ~~~~l~~~-------------------------------------------------------l~~---~g--~~~v~~p 128 (474)
T 2iz1_A 109 DTMRRNAE-------------------------------------------------------LAD---SG--INFIGTG 128 (474)
T ss_dssp HHHHHHHH-------------------------------------------------------TTT---SS--CEEEEEE
T ss_pred HHHHHHHH-------------------------------------------------------HHH---CC--CeEECCC
Confidence 77665541 111 11 2233444
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCc-------eEEecCchhHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRK-------HILTTNTWSSELSKLAANAFLAQRISS 314 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~-------~v~~~~~~~Ae~~Kl~~N~~~~~~ia~ 314 (598)
....+..+..+ | .+++||+. ++.+.++++|+.++... ..+++..+.+..+|+++|.+.+..+..
T Consensus 129 v~gg~~~a~~g---~-~i~~gg~~-----~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~ 199 (474)
T 2iz1_A 129 VSGGEKGALLG---P-SMMPGGQK-----EAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQL 199 (474)
T ss_dssp ECSHHHHHHHC---C-CEEEEECH-----HHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhccC---C-eEEecCCH-----HHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHH
Confidence 43221111111 2 36788843 57888999999987421 345678899999999999999999999
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHc---CCcc------cccc-cc--ccCcc-ccccch-----hhhHH-HHHHHHHHcCC
Q psy11160 315 INSLSAVCEA-TGADVSEVAKAVG---LDSR------IGAK-FL--QASVG-FGGSCF-----QKDIL-NLVYICECLNL 374 (598)
Q Consensus 315 ~nE~~~la~~-~gid~~ev~~~l~---~~~r------i~~~-~l--~~~~g-fgg~cl-----~KD~~-~L~~~a~~~G~ 374 (598)
++|+..++++ +|++..++.+++. ...- +... +. ++.+| |-...+ .||.. ...+.+.++|+
T Consensus 200 laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv 279 (474)
T 2iz1_A 200 IAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGV 279 (474)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhHhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCC
Confidence 9999999999 8999999998884 2210 0001 11 22233 222222 26666 56788999998
Q ss_pred h
Q psy11160 375 P 375 (598)
Q Consensus 375 ~ 375 (598)
+
T Consensus 280 ~ 280 (474)
T 2iz1_A 280 P 280 (474)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-16 Score=161.86 Aligned_cols=253 Identities=13% Similarity=0.111 Sum_probs=167.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC--CHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK--SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~--~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.||.++|..|++ .|++|++||+ ++++++.+++....+.. +.
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-g~ 52 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVD---------------------------NGNEVRIWGTEFDTEILKSISAGREHPRL-GV 52 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHH---------------------------HCCEEEEECCGGGHHHHHHHHTTCCBTTT-TB
T ss_pred CEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEEccCCHHHHHHHHHhCcCccc-Cc
Confidence 589999999999999999999 7999999999 99999998864321111 11
Q ss_pred HHHHhhhcCCceEEec--CHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec-CC--
Q psy11160 84 DEVVKKTRDVNLFFST--DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS-TV-- 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S-Tv-- 158 (598)
. . .++.+++ ++.++++++|+||+|||++ .+.++++.+.+ ++++++||..+ ++
T Consensus 53 ~------~-~~~~~~~~~~~~~~~~~~D~vi~~v~~~---------------~~~~v~~~i~~-l~~~~~vv~~~ng~~~ 109 (335)
T 1txg_A 53 K------L-NGVEIFWPEQLEKCLENAEVVLLGVSTD---------------GVLPVMSRILP-YLKDQYIVLISKGLID 109 (335)
T ss_dssp C------C-CSEEEECGGGHHHHHTTCSEEEECSCGG---------------GHHHHHHHHTT-TCCSCEEEECCCSEEE
T ss_pred c------c-cceEEecHHhHHHHHhcCCEEEEcCChH---------------HHHHHHHHHhc-CCCCCEEEEEcCcCcc
Confidence 0 0 2356777 8877899999999999764 36778888888 88899888776 66
Q ss_pred -chHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCC-ceee
Q psy11160 159 -PVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTN-VQFQ 236 (598)
Q Consensus 159 -~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g-~~~~ 236 (598)
+|++.+.+...+ .+.+ .+ ..+.
T Consensus 110 ~~~~~~~~l~~~~-------------------------------------------------------~~~~-g~~~~~~ 133 (335)
T 1txg_A 110 FDNSVLTVPEAVW-------------------------------------------------------RLKH-DLRERTV 133 (335)
T ss_dssp ETTEEEEHHHHHH-------------------------------------------------------TTST-TCGGGEE
T ss_pred CCCCcCccHHHHH-------------------------------------------------------HHhc-CCCCcEE
Confidence 666665544321 1100 00 0123
Q ss_pred EEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHH----------------
Q psy11160 237 ILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELS---------------- 300 (598)
Q Consensus 237 l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~---------------- 300 (598)
+...|.+...+. ...|..+++|+.+. +..+.++++|+..+. ......+...++..
T Consensus 134 ~~~~p~~~~~~~----~g~~~~~~~~~~~~----~~~~~~~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~~~~~~~ 204 (335)
T 1txg_A 134 AITGPAIAREVA----KRMPTTVVFSSPSE----SSANKMKEIFETEYF-GVEVTTDIIGTEITSALKNVYSIAIAWIRG 204 (335)
T ss_dssp EEESSCCHHHHH----TTCCEEEEEECSCH----HHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHH----ccCCcEEEEEeCCH----HHHHHHHHHhCCCcE-EEEecCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554432110 12334566776532 567888999987652 33445666555554
Q ss_pred -HHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH------HHHcCCccccccc---cccCccc---------cc-
Q psy11160 301 -KLA-----ANAFLAQRISSINSLSAVCEATGADVSEVA------KAVGLDSRIGAKF---LQASVGF---------GG- 355 (598)
Q Consensus 301 -Kl~-----~N~~~~~~ia~~nE~~~la~~~gid~~ev~------~~l~~~~ri~~~~---l~~~~gf---------gg- 355 (598)
|+. +|.+.+.....++|+..++++.|+|..++. +.+.+... +.+. ..++.+| ||
T Consensus 205 ~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~d~~~~~~~ 283 (335)
T 1txg_A 205 YESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNGMLGELLGKGLSIDEAMEELERR 283 (335)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeecccc-CccHHHHHHHhCCCCHHHHHHHhccC
Confidence 666 788888999999999999999999987654 44433211 0000 0112223 21
Q ss_pred c-ch---hhhHHHHHHHHHHcCCh
Q psy11160 356 S-CF---QKDILNLVYICECLNLP 375 (598)
Q Consensus 356 ~-cl---~KD~~~L~~~a~~~G~~ 375 (598)
+ +. .||..++.+++++.|++
T Consensus 284 ~~~~~E~~~~~~~~~~~a~~~gv~ 307 (335)
T 1txg_A 284 GVGVVEGYKTAEKAYRLSSKINAD 307 (335)
T ss_dssp TCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CceecchHHHHHHHHHHHHHcCCC
Confidence 1 33 39999999999999987
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-17 Score=161.33 Aligned_cols=201 Identities=15% Similarity=0.164 Sum_probs=127.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~~~~~~~~~e~~ 82 (598)
.+||+|||+|.||.+||..|++ .|++|++||+++++ .+...... ....
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~---------------------------~G~~V~~~~r~~~~~~~~~~~~~~---~~~~ 68 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALAD---------------------------LGHEVTIGTRDPKATLARAEPDAM---GAPP 68 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHTCC----------CC
T ss_pred CCeEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCChhhhhhhhhhhhh---cchh
Confidence 4799999999999999999999 89999999999987 11110000 0000
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHH-HHHcCCCcEEEEec-----
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMI-AEIATDNKIVVEKS----- 156 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ivv~~S----- 156 (598)
+.++... . ... .++++.+++++||+||+|||.+. +.+++..+ .+.+ ++++||+.|
T Consensus 69 ~~~~~~~-~-~~~-~~~~~~e~~~~aDvVilavp~~~---------------~~~~~~~i~~~~l-~g~ivi~~s~~~~~ 129 (245)
T 3dtt_A 69 FSQWLPE-H-PHV-HLAAFADVAAGAELVVNATEGAS---------------SIAALTAAGAENL-AGKILVDIANPLDF 129 (245)
T ss_dssp HHHHGGG-S-TTC-EEEEHHHHHHHCSEEEECSCGGG---------------HHHHHHHHCHHHH-TTSEEEECCCCEEC
T ss_pred hhHHHhh-c-Cce-eccCHHHHHhcCCEEEEccCcHH---------------HHHHHHHhhhhhc-CCCEEEECCCCCCC
Confidence 1111111 0 112 34567788999999999997642 44556667 6666 889999999
Q ss_pred ------CCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhccc
Q psy11160 157 ------TVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHK 230 (598)
Q Consensus 157 ------Tv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~ 230 (598)
|+.|++++.+.. .+++.+.. .-|+ +
T Consensus 130 ~~G~~~t~~~~~~~~~~~---------------------------~l~~~l~~-~~vv-~-------------------- 160 (245)
T 3dtt_A 130 SHGMPPTLNPVNTDSLGE---------------------------QIQRTFPE-AKVV-K-------------------- 160 (245)
T ss_dssp TTCSSCEESSCSSCCHHH---------------------------HHHHHSTT-SEEE-E--------------------
T ss_pred cCCccccccCCCCccHHH---------------------------HHHHHCCC-CeEE-E--------------------
Confidence 777766544332 11222211 1000 0
Q ss_pred CCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHH
Q psy11160 231 TNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQ 310 (598)
Q Consensus 231 ~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~ 310 (598)
.+..+++|.+..+..+..+.. .++++|++. ++.+.++++|+.++....+++|+.++|..+|+++|++..+
T Consensus 161 ---~~~~~~a~v~~~~~~a~~g~~---~~~v~g~d~----~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l 230 (245)
T 3dtt_A 161 ---TLNTMNASLMVDPGRAAGGDH---SVFVSGNDA----AAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRL 230 (245)
T ss_dssp ---CSTTSCHHHHHCGGGTGGGCC---CEEEECSCH----HHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHH
T ss_pred ---eecccCHHHhcCccccCCCCe---eEEEECCCH----HHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHH
Confidence 122233444433322222222 366766542 6889999999999743457899999999999999999987
Q ss_pred HHH
Q psy11160 311 RIS 313 (598)
Q Consensus 311 ~ia 313 (598)
++.
T Consensus 231 ~~~ 233 (245)
T 3dtt_A 231 WGA 233 (245)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=169.40 Aligned_cols=256 Identities=17% Similarity=0.185 Sum_probs=164.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
|||+|||+|.||.++|..|++ .|++|++||+++++++.+++ +..+.+.++..
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~---------------------------~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~ 68 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSK---------------------------KCREVCVWHMNEEEVRLVNEKRENVLFLKGVQ 68 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTT---------------------------TEEEEEEECSCHHHHHHHHHHTBCTTTSTTCB
T ss_pred CeEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHcCcccccccccc
Confidence 399999999999999999999 89999999999999999875 33333444321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHH----HHHHcCC-CcEEEEec-CC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARM----IAEIATD-NKIVVEKS-TV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~-~~ivv~~S-Tv 158 (598)
...++.+++++.++++++|+||+|||.+ .++++++. |.+.+++ +++||..| ++
T Consensus 69 ------~~~~~~~~~~~~~~~~~aDvVilav~~~---------------~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 69 ------LASNITFTSDVEKAYNGAEIILFVIPTQ---------------FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp ------CCTTEEEESCHHHHHTTCSSEEECCCHH---------------HHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred ------cccceeeeCCHHHHHcCCCEEEECCChH---------------HHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 1235788889988899999999998642 47778888 8888887 88887776 67
Q ss_pred chHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEE
Q psy11160 159 PVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL 238 (598)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~ 238 (598)
.+.+.+.+.. .+.+.+ .+..+.+.
T Consensus 128 ~~~~~~~~~~-------------------------------------------------------~l~~~~-~~~~~~v~ 151 (366)
T 1evy_A 128 ERSTLKFPAE-------------------------------------------------------IIGEFL-PSPLLSVL 151 (366)
T ss_dssp CTTTCCCHHH-------------------------------------------------------HHTTTS-CGGGEEEE
T ss_pred CCccccCHHH-------------------------------------------------------HHHHHC-CCCcEEEE
Confidence 7765433322 111100 00123355
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcc--cCCceEEecCchhHHHHHH--------------
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHW--IPRKHILTTNTWSSELSKL-------------- 302 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~--~~~~~v~~~~~~~Ae~~Kl-------------- 302 (598)
..|.+.... ....+..+++|+.+. +.++.++++|+.. +- ......+....+..|+
T Consensus 152 ~gp~~~~~~----~~g~~~~~~~~~~~~----~~~~~v~~ll~~~g~g~-~~~~~~di~~~~~~k~~~n~~~~~~~~~~~ 222 (366)
T 1evy_A 152 AGPSFAIEV----ATGVFTCVSIASADI----NVARRLQRIMSTGDRSF-VCWATTDTVGCEVASAVKNVLAIGSGVANG 222 (366)
T ss_dssp ESSCCHHHH----HTTCCEEEEEECSSH----HHHHHHHHHHSCTTSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCChHHHH----HhCCceEEEEecCCH----HHHHHHHHHhcCCCCeE-EEEEcCCchHHHHHHHHHhHHHHHHHHHhh
Confidence 566543210 112233445555432 5678889999876 41 2333445444444444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH------H---cCC-cc---ccccccccCcccc------ccc--h
Q psy11160 303 ---AANAFLAQRISSINSLSAVCEATGADVSEVAKA------V---GLD-SR---IGAKFLQASVGFG------GSC--F 358 (598)
Q Consensus 303 ---~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~------l---~~~-~r---i~~~~l~~~~gfg------g~c--l 358 (598)
.+|.+.++....++|+..+|++.|+|+..+.++ + ... .+ .+..+.. +..+. +.+ .
T Consensus 223 ~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~e~ 301 (366)
T 1evy_A 223 LGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGK-GLPIEEIQRTSKAVAEG 301 (366)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHT-TCCHHHHHC---CCCHH
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHhC-CCCHHHHHHHcCCeeeh
Confidence 367778889999999999999999998655321 1 010 01 0100000 11111 223 3
Q ss_pred hhhHHHHHHHHHHcCCh
Q psy11160 359 QKDILNLVYICECLNLP 375 (598)
Q Consensus 359 ~KD~~~L~~~a~~~G~~ 375 (598)
.||..++.++++++|++
T Consensus 302 ~~~~~~v~~~a~~~gv~ 318 (366)
T 1evy_A 302 VATADPLMRLAKQLKVK 318 (366)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 59999999999999986
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=154.40 Aligned_cols=269 Identities=14% Similarity=0.053 Sum_probs=163.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC-CCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY-EPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~-e~~~ 83 (598)
+|||+|||+|.||.++|..|++ .|++|++||+++++++.+++....+. .++.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~---------------------------~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~ 55 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQ---------------------------GGNDVTLIDQWPAHIEAIRKNGLIADFNGEE 55 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHHCEEEEETTEE
T ss_pred CCeEEEECcCHHHHHHHHHHHh---------------------------CCCcEEEEECCHHHHHHHHhCCEEEEeCCCe
Confidence 4799999999999999999999 89999999999999998875321111 1100
Q ss_pred HHHHhhhcCCceEEecCHHHH---hccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSA---IQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
...++.++++ .++ ++++|+||+|||.+ .+.++++.+.+.++++++|+..++..
T Consensus 56 -------~~~~~~~~~~-~~~~~~~~~~d~vi~~v~~~---------------~~~~v~~~l~~~l~~~~~iv~~~~g~- 111 (316)
T 2ew2_A 56 -------VVANLPIFSP-EEIDHQNEQVDLIIALTKAQ---------------QLDAMFKAIQPMITEKTYVLCLLNGL- 111 (316)
T ss_dssp -------EEECCCEECG-GGCCTTSCCCSEEEECSCHH---------------HHHHHHHHHGGGCCTTCEEEECCSSS-
T ss_pred -------eEecceeecc-hhhcccCCCCCEEEEEeccc---------------cHHHHHHHHHHhcCCCCEEEEecCCC-
Confidence 0012233332 223 34899999998643 46788889999999999988876632
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
+..+.+.. .+.+..++ ....+. .
T Consensus 112 ~~~~~l~~-------------------------------~~~~~~vi--~g~~~~------------------------~ 134 (316)
T 2ew2_A 112 GHEDVLEK-------------------------------YVPKENIL--VGITMW------------------------T 134 (316)
T ss_dssp CTHHHHTT-------------------------------TSCGGGEE--EEEECC------------------------C
T ss_pred CcHHHHHH-------------------------------HcCCccEE--EEEeee------------------------e
Confidence 33333322 11111110 000000 0
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHH-------------
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF------------- 307 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~------------- 307 (598)
.++..|+...+.... ++.+|... ...++..+.++++|+.++. ......+...++..|++.|..
T Consensus 135 ~~~~~p~~~~~~~~g--~~~i~~~~-~~~~~~~~~~~~ll~~~g~-~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~ 210 (316)
T 2ew2_A 135 AGLEGPGRVKLLGDG--EIELENID-PSGKKFALEVVDVFQKAGL-NPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIA 210 (316)
T ss_dssp CEEEETTEEEECSCC--CEEEEESS-GGGHHHHHHHHHHHHHTTC-CEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHH
T ss_pred eEEcCCCEEEEecCC--cEEEeecC-CCccHHHHHHHHHHHhCCC-CcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHH
Confidence 011112221111111 12222111 0123567888999998863 455567889999999999964
Q ss_pred --------HHHHHHHHHHHHHHHHHcCCCH--HHHHHHHcC----C--cc-cccccccc-CccccccchhhhHHHHHHHH
Q psy11160 308 --------LAQRISSINSLSAVCEATGADV--SEVAKAVGL----D--SR-IGAKFLQA-SVGFGGSCFQKDILNLVYIC 369 (598)
Q Consensus 308 --------~~~~ia~~nE~~~la~~~gid~--~ev~~~l~~----~--~r-i~~~~l~~-~~gfgg~cl~KD~~~L~~~a 369 (598)
.......++|+..++++.|++. ..+.+.+.. . .+ .++...+. ..|+-.. +.+|..++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~~g~~~E-~~~~~~~~~~~a 289 (316)
T 2ew2_A 211 EFGALPVSESLVKTLISEFAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHYPSMYQDLIKNHRLTE-IDYINGAVWRKG 289 (316)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTSCCHHHHHHTTTCCCCS-GGGTHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccccCCCCCcHHHHHHHHcCCcch-HHHHhhHHHHHH
Confidence 3567788999999999999986 456666542 1 11 11111133 4455445 789999999999
Q ss_pred HHcCCh-hHHHHHHHHHH
Q psy11160 370 ECLNLP-EVASYWQQLYE 386 (598)
Q Consensus 370 ~~~G~~-~~~~~~~~~i~ 386 (598)
++.|++ .+.+.+.++++
T Consensus 290 ~~~gv~~P~~~~~~~~~~ 307 (316)
T 2ew2_A 290 QKYNVATPFCAMLTQLVH 307 (316)
T ss_dssp HHHTCCCHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHH
Confidence 999986 23333334443
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-16 Score=163.97 Aligned_cols=256 Identities=16% Similarity=0.169 Sum_probs=166.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-------ceEEEEeCCHH-----HHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-------IQVTVVDKSEE-----RIRQWN 72 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~v~~~d~~~~-----~~~~~~ 72 (598)
+|||+|||+|.||.++|..|++ .| ++|++||++++ +++.++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~---------------------------~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~ 73 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGT---------------------------NAKNNYLFENEVRMWIRDEFVNGERMVDIIN 73 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHH---------------------------HHHHCTTBCSCEEEECCSCC---CCHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------cCCccCCCCCeEEEEECChhhhhHHHHHHHH
Confidence 4689999999999999999999 67 99999999998 888887
Q ss_pred c-CCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH----HcC
Q psy11160 73 S-NKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE----IAT 147 (598)
Q Consensus 73 ~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~ 147 (598)
+ +..+.+.++.. ...++.+++|+.+++++||+||+|||++ .+++++++|.+ .++
T Consensus 74 ~~~~~~~~~~~~~------~~~~i~~~~~~~ea~~~aDvVilav~~~---------------~~~~vl~~i~~~~~~~l~ 132 (375)
T 1yj8_A 74 NKHENTKYLKGVP------LPHNIVAHSDLASVINDADLLIFIVPCQ---------------YLESVLASIKESESIKIA 132 (375)
T ss_dssp HHCBCTTTSTTCB------CCTTEEEESSTHHHHTTCSEEEECCCHH---------------HHHHHHHHHTC---CCCC
T ss_pred hcCcccccCCccc------CcCCeEEECCHHHHHcCCCEEEEcCCHH---------------HHHHHHHHHhhhhhccCC
Confidence 5 44444545431 1235788899988899999999998742 57888888988 888
Q ss_pred CCcEEEEec-CCch--HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHH
Q psy11160 148 DNKIVVEKS-TVPV--RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNV 224 (598)
Q Consensus 148 ~~~ivv~~S-Tv~~--~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~ 224 (598)
++++||..| ++.+ ++.+.+.. .
T Consensus 133 ~~~ivvs~~~Gi~~~~~~~~~l~~-------------------------------------------------------~ 157 (375)
T 1yj8_A 133 SHAKAISLTKGFIVKKNQMKLCSN-------------------------------------------------------Y 157 (375)
T ss_dssp TTCEEEECCCSCEEETTEEECHHH-------------------------------------------------------H
T ss_pred CCCEEEEeCCccccCCccccCHHH-------------------------------------------------------H
Confidence 899888766 4555 23222221 1
Q ss_pred HhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHH-
Q psy11160 225 LKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLA- 303 (598)
Q Consensus 225 L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~- 303 (598)
+.+.+ +.++.+...|.+..+. ....+..+.+|+.+. +..+.++++|+..+- ......+....+..|++
T Consensus 158 l~~~~--~~~~~v~~gp~~a~~v----~~g~~~~~~~~~~~~----~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~l~ 226 (375)
T 1yj8_A 158 ISDFL--NIPCSALSGANIAMDV----AMENFSEATIGGNDK----DSLVIWQRVFDLPYF-KINCVNETIEVEICGALK 226 (375)
T ss_dssp HHHHS--SSCEEEEECSCCHHHH----HTTCCEEEEEECSCH----HHHHHHHHHHCBTTE-EEEEESCSHHHHHHHHHH
T ss_pred HHHHc--CCCEEEEeCCchHHHH----HhCCCeEEEEecCCH----HHHHHHHHHhCCCCe-EEEEeCCcHHHHHHHHHH
Confidence 21111 1123445555543211 112233455555432 567888999987542 23344565555555543
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHH------HcC--Ccc---ccccccccC--cc
Q psy11160 304 ----------------ANAFLAQRISSINSLSAVCEAT--GADVSEVAKA------VGL--DSR---IGAKFLQAS--VG 352 (598)
Q Consensus 304 ----------------~N~~~~~~ia~~nE~~~la~~~--gid~~ev~~~------l~~--~~r---i~~~~l~~~--~g 352 (598)
+|.+.+.....++|+..++++. |+|+..+.++ +.+ ..| ++..+...+ ..
T Consensus 227 N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~~~~~~~~~g~~~~ 306 (375)
T 1yj8_A 227 NIITLACGFCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKT 306 (375)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeCCccHHHHHHHHhcCCCCC
Confidence 5668889999999999999999 6998665432 111 111 111111101 11
Q ss_pred cc--------ccch--hhhHHHHHHHHHHcCC
Q psy11160 353 FG--------GSCF--QKDILNLVYICECLNL 374 (598)
Q Consensus 353 fg--------g~cl--~KD~~~L~~~a~~~G~ 374 (598)
+. |.+. .||..++.+++++.|+
T Consensus 307 ~~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv 338 (375)
T 1yj8_A 307 WEELENEILKGQKLQGTVTLKYVYHMIKEKNM 338 (375)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCcEeeHHHHHHHHHHHHHHhCC
Confidence 11 4444 7899999999999999
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=159.36 Aligned_cols=247 Identities=14% Similarity=0.158 Sum_probs=156.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
-|||+|||+|.||.++|..|++ +|++|++||+++++++.+++.....++|+..
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~---------------------------~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~ 66 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHE---------------------------NGEEVILWARRKEIVDLINVSHTSPYVEESK 66 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSHHHHHHHHHHSCBTTBTTCC
T ss_pred CCcEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHhCCcccCCCCe
Confidence 4799999999999999999999 8999999999999999998532222444432
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec-CCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS-TVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S-Tv~~~~~ 163 (598)
.++.+++++.+ ++++|+||+|||++ .++++++.+.+ ++++||..+ ++.+.+.
T Consensus 67 --------~~~~~~~~~~~-~~~aDvVil~vk~~---------------~~~~v~~~l~~---~~~~vv~~~nGi~~~~~ 119 (335)
T 1z82_A 67 --------ITVRATNDLEE-IKKEDILVIAIPVQ---------------YIREHLLRLPV---KPSMVLNLSKGIEIKTG 119 (335)
T ss_dssp --------CCSEEESCGGG-CCTTEEEEECSCGG---------------GHHHHHTTCSS---CCSEEEECCCCCCTTTC
T ss_pred --------eeEEEeCCHHH-hcCCCEEEEECCHH---------------HHHHHHHHhCc---CCCEEEEEeCCCCCCcc
Confidence 14677888887 89999999999743 36666666544 678888777 6777655
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.+.. .+.+.+ +.++.+...|.+
T Consensus 120 ~~l~~-------------------------------------------------------~~~~~~--~~~~~~~~~P~~ 142 (335)
T 1z82_A 120 KRVSE-------------------------------------------------------IVEEIL--GCPYAVLSGPSH 142 (335)
T ss_dssp CCHHH-------------------------------------------------------HHHHHT--CCCEEEEESSCC
T ss_pred CcHHH-------------------------------------------------------HHHHHc--CCceEEEECCcc
Confidence 44433 111111 112344555544
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHH-----------------HHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELS-----------------KLAANA 306 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~-----------------Kl~~N~ 306 (598)
..+. ....|..+++|+.+ .+.++++|+..+. ......+....+.. |+.+|.
T Consensus 143 ~~~~----~~g~~~~~~~g~~~-------~~~~~~ll~~~g~-~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~ 210 (335)
T 1z82_A 143 AEEV----AKKLPTAVTLAGEN-------SKELQKRISTEYF-RVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNA 210 (335)
T ss_dssp HHHH----HTTCCEEEEEEETT-------HHHHHHHHCCSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHH----hCCCceEEEEEehh-------HHHHHHHhCCCCE-EEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchh
Confidence 3211 11223345555432 5667888876542 22333444333333 344566
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHc---------C-Ccc---ccccccccCcccc------ccch--hhhHHHH
Q psy11160 307 FLAQRISSINSLSAVCEATGADVSEVAKAVG---------L-DSR---IGAKFLQASVGFG------GSCF--QKDILNL 365 (598)
Q Consensus 307 ~~~~~ia~~nE~~~la~~~gid~~ev~~~l~---------~-~~r---i~~~~l~~~~gfg------g~cl--~KD~~~L 365 (598)
+.+....+++|+..++++.|+|...+.++.. . ..+ .+..+.. +..+. |.+. .||..++
T Consensus 211 ~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~~-g~~~~~~~~~~g~~~e~~~~~~~v 289 (335)
T 1z82_A 211 KAALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIAR-GFNPLKLLESSNQVVEGAFTVKAV 289 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHH-TCCHHHHHHTCSSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHHHHHHHhC-CCCHHHHHHhcCCeeeHHHHHHHH
Confidence 6788889999999999999999987654311 0 011 1111101 11111 3333 5999999
Q ss_pred HHHHHHcCCh
Q psy11160 366 VYICECLNLP 375 (598)
Q Consensus 366 ~~~a~~~G~~ 375 (598)
.+++++.|++
T Consensus 290 ~~~a~~~gv~ 299 (335)
T 1z82_A 290 MKIAKENKID 299 (335)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHhCCC
Confidence 9999999986
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=160.86 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=163.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-------ceEEEEeCCHH-----HHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-------IQVTVVDKSEE-----RIRQWN 72 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~v~~~d~~~~-----~~~~~~ 72 (598)
+|||+|||+|.||.++|..|++ .| ++|++||++++ +.+.++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~---------------------------~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~ 60 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGG---------------------------NAAQLAQFDPRVTMWVFEEDIGGKKLTEIIN 60 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH---------------------------HHHHCTTEEEEEEEECCCCBSSSSBHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------------------------cCCcccCCCCeEEEEEcChhhhhhHHHHHHH
Confidence 3699999999999999999999 67 99999999998 888887
Q ss_pred c-CCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy11160 73 S-NKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKI 151 (598)
Q Consensus 73 ~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 151 (598)
+ +....+.++.. ...++.+++++.+++++||+||+|||.+ .+++++++|.+.++++++
T Consensus 61 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~aD~Vilav~~~---------------~~~~v~~~i~~~l~~~~i 119 (354)
T 1x0v_A 61 TQHENVKYLPGHK------LPPNVVAVPDVVQAAEDADILIFVVPHQ---------------FIGKICDQLKGHLKANAT 119 (354)
T ss_dssp HHSCCTTTSTTCC------CCTTEEEESSHHHHHTTCSEEEECCCGG---------------GHHHHHHHHTTCSCTTCE
T ss_pred hcCcccccCCccc------CccCeEEEcCHHHHHcCCCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCE
Confidence 4 33333333321 1235788889988899999999998753 367888899888988998
Q ss_pred EEEecC-Cc--hHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhc
Q psy11160 152 VVEKST-VP--VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKAN 228 (598)
Q Consensus 152 vv~~ST-v~--~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~ 228 (598)
|+..++ +. |++.+.+.. .+.+.
T Consensus 120 vv~~~~Gi~~~~~~~~~l~~-------------------------------------------------------~l~~~ 144 (354)
T 1x0v_A 120 GISLIKGVDEGPNGLKLISE-------------------------------------------------------VIGER 144 (354)
T ss_dssp EEECCCCBCSSSSSCCBHHH-------------------------------------------------------HHHHH
T ss_pred EEEECCccCCCCCccccHHH-------------------------------------------------------HHHHH
Confidence 887765 43 333322221 11110
Q ss_pred ccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHH-----
Q psy11160 229 HKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLA----- 303 (598)
Q Consensus 229 ~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~----- 303 (598)
+ +..+.+...|.+... . ....|..+.+|+.+. +..+.++++|+..+- ......+....+..|++
T Consensus 145 ~--~~~~~v~~gp~~a~~---v-~~g~~~~~~~~~~~~----~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~ 213 (354)
T 1x0v_A 145 L--GIPMSVLMGANIASE---V-ADEKFCETTIGCKDP----AQGQLLKELMQTPNF-RITVVQEVDTVEICGALKNVVA 213 (354)
T ss_dssp H--TCCEEEEECSCCHHH---H-HTTCCEEEEEECSSH----HHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHH
T ss_pred c--CCCEEEEECCCcHHH---H-HhcCCceEEEEECCH----HHHHHHHHHhCCCCE-EEEEcCCchHhHHHHHHHHHHH
Confidence 0 112334555544321 0 012233455565432 567888999987642 23334565556666665
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHHH------HcC--Ccc---ccccccccCcccc---
Q psy11160 304 ------------ANAFLAQRISSINSLSAVCEATGA---DVSEVAKA------VGL--DSR---IGAKFLQASVGFG--- 354 (598)
Q Consensus 304 ------------~N~~~~~~ia~~nE~~~la~~~gi---d~~ev~~~------l~~--~~r---i~~~~l~~~~gfg--- 354 (598)
+|.+.+.....++|+..+|++.|+ ++..+.++ +.+ ..| ++..+...+..+.
T Consensus 214 ~~~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (354)
T 1x0v_A 214 VGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLE 293 (354)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcccccHHHHHHHHhcCCCHHHHH
Confidence 677888999999999999999999 87665321 111 011 1111111011111
Q ss_pred -----ccc--hhhhHHHHHHHHHHcCC
Q psy11160 355 -----GSC--FQKDILNLVYICECLNL 374 (598)
Q Consensus 355 -----g~c--l~KD~~~L~~~a~~~G~ 374 (598)
|.+ +.||..++.++++++|+
T Consensus 294 ~~~~~g~~~E~~~~~g~v~~~a~~~gv 320 (354)
T 1x0v_A 294 KELLNGQKLQGPETARELYSILQHKGL 320 (354)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHTC
T ss_pred HhhcCCcEeehHHHHHHHHHHHHHhCC
Confidence 333 36889999999999999
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=141.82 Aligned_cols=194 Identities=15% Similarity=0.210 Sum_probs=133.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+||+|||+|.||.+||.+|+ . |++|++||+++++++.+.+. + .+
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-a---------------------------G~~V~v~d~~~~~~~~~~~~---l----~~ 56 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-S---------------------------KHEVVLQDVSEKALEAAREQ---I----PE 56 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T---------------------------TSEEEEECSCHHHHHHHHHH---S----CG
T ss_pred CCeEEEEeeCHHHHHHHHHHH-c---------------------------CCEEEEEECCHHHHHHHHHH---H----HH
Confidence 378999999999999999988 3 89999999999999887643 1 00
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHH-HHHHHHHHHcCCCcEE-EEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVE-AAARMIAEIATDNKIV-VEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~iv-v~~STv~~~~ 162 (598)
+ ...+++.++|+++ +++||+||.|||.+. .++ ..+..+.+. +++++ .+.||+++..
T Consensus 57 ~-----~~~~i~~~~~~~~-~~~aDlVieavpe~~--------------~vk~~l~~~l~~~--~~~IlasntSti~~~~ 114 (293)
T 1zej_A 57 E-----LLSKIEFTTTLEK-VKDCDIVMEAVFEDL--------------NTKVEVLREVERL--TNAPLCSNTSVISVDD 114 (293)
T ss_dssp G-----GGGGEEEESSCTT-GGGCSEEEECCCSCH--------------HHHHHHHHHHHTT--CCSCEEECCSSSCHHH
T ss_pred H-----HhCCeEEeCCHHH-HcCCCEEEEcCcCCH--------------HHHHHHHHHHhcC--CCCEEEEECCCcCHHH
Confidence 1 1135788899875 899999999997653 233 344566555 88877 4788999864
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
..+... + -+. . .| .++. +|.
T Consensus 115 ~a~~~~--------------------------------------------------~-----~~r-~-~G--~Hf~-~Pv 134 (293)
T 1zej_A 115 IAERLD--------------------------------------------------S-----PSR-F-LG--VHWM-NPP 134 (293)
T ss_dssp HHTTSS--------------------------------------------------C-----GGG-E-EE--EEEC-SST
T ss_pred HHHHhh--------------------------------------------------c-----ccc-e-Ee--EEec-Ccc
Confidence 421100 0 000 0 12 2333 365
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
...+ +. -++.|.... +++++.++++++.++. .++++++. |+++|++. .+++|...++
T Consensus 135 ~~~~------lv---eiv~g~~t~---~~~~~~~~~l~~~lGk-~~v~v~d~------fi~Nrll~----~~~~EA~~l~ 191 (293)
T 1zej_A 135 HVMP------LV---EIVISRFTD---SKTVAFVEGFLRELGK-EVVVCKGQ------SLVNRFNA----AVLSEASRMI 191 (293)
T ss_dssp TTCC------EE---EEEECTTCC---HHHHHHHHHHHHHTTC-EEEEEESS------CHHHHHHH----HHHHHHHHHH
T ss_pred ccCC------EE---EEECCCCCC---HHHHHHHHHHHHHcCC-eEEEeccc------ccHHHHHH----HHHHHHHHHH
Confidence 4321 11 255554332 3789999999999874 56666643 88887765 5789999999
Q ss_pred HHcCCCHHHHHHHHcCC
Q psy11160 323 EATGADVSEVAKAVGLD 339 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~ 339 (598)
++ |++++++-+++...
T Consensus 192 ~~-Gv~~e~id~~~~~g 207 (293)
T 1zej_A 192 EE-GVRAEDVDRVWKHH 207 (293)
T ss_dssp HH-TCCHHHHHHHHHTT
T ss_pred Hh-CCCHHHHHHHHHhc
Confidence 99 88999999999764
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=141.85 Aligned_cols=211 Identities=19% Similarity=0.234 Sum_probs=135.6
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
..++||+|||+|.||.++|..|+. .|++|++||+++++++.+.+... ..
T Consensus 13 ~~~~~I~VIG~G~mG~~iA~~la~---------------------------~G~~V~~~d~~~~~~~~~~~~i~----~~ 61 (302)
T 1f0y_A 13 IIVKHVTVIGGGLMGAGIAQVAAA---------------------------TGHTVVLVDQTEDILAKSKKGIE----ES 61 (302)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHHHH----HH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHHHHH----HH
Confidence 346789999999999999999999 89999999999998886532100 00
Q ss_pred hHHHHhh--------------hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCC
Q psy11160 83 LDEVVKK--------------TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATD 148 (598)
Q Consensus 83 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 148 (598)
++.++++ ....++++++|+++++++||+||+|||.+. .....+++.+.+.+++
T Consensus 62 l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avp~~~-------------~~~~~v~~~l~~~~~~ 128 (302)
T 1f0y_A 62 LRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENL-------------KVKNELFKRLDKFAAE 128 (302)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEEECCCSCH-------------HHHHHHHHHHTTTSCT
T ss_pred HHHHHHcCCCCccccchhhHHHHHhceEEecCHHHhhcCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCC
Confidence 0111100 001257889999888999999999997642 2345677888888888
Q ss_pred CcEEE-EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh
Q psy11160 149 NKIVV-EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA 227 (598)
Q Consensus 149 ~~ivv-~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~ 227 (598)
+++|+ ..||+++.. ++. .+.. | +.
T Consensus 129 ~~iv~s~ts~i~~~~---l~~-------------------------------~~~~----------~-----------~~ 153 (302)
T 1f0y_A 129 HTIFASNTSSLQITS---IAN-------------------------------ATTR----------Q-----------DR 153 (302)
T ss_dssp TCEEEECCSSSCHHH---HHT-------------------------------TSSC----------G-----------GG
T ss_pred CeEEEECCCCCCHHH---HHH-------------------------------hcCC----------c-----------cc
Confidence 88876 456776643 221 0000 0 00
Q ss_pred cccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHH
Q psy11160 228 NHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAF 307 (598)
Q Consensus 228 ~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~ 307 (598)
. .| .+. .+|....+ . ..+++|... .+++++.+.++++.++. .++.+++. .+ ++++|++
T Consensus 154 -~-~g--~h~-~~P~~~~~------~----~~i~~g~~~--~~e~~~~~~~l~~~~G~-~~v~~~~~-~g---~i~nr~l 211 (302)
T 1f0y_A 154 -F-AG--LHF-FNPVPVMK------L----VEVIKTPMT--SQKTFESLVDFSKALGK-HPVSCKDT-PG---FIVNRLL 211 (302)
T ss_dssp -E-EE--EEE-CSSTTTCC------E----EEEECCTTC--CHHHHHHHHHHHHHTTC-EEEEECSC-TT---TTHHHHH
T ss_pred -E-EE--Eec-CCCcccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCc-cc---ccHHHHH
Confidence 0 01 111 23433211 1 123444321 23688999999999873 45555432 22 5566554
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 308 LAQRISSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 308 ~~~~ia~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
+.++||...++++.+++++++-+++..
T Consensus 212 ----~~~~~Ea~~l~~~g~~~~~~id~~~~~ 238 (302)
T 1f0y_A 212 ----VPYLMEAIRLYERGDASKEDIDTAMKL 238 (302)
T ss_dssp ----HHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 357899999999999999999888853
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=156.13 Aligned_cols=213 Identities=18% Similarity=0.170 Sum_probs=143.1
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC----CCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK----LPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~~~~ 79 (598)
.++||+|||+|.||.+||..|++ .|++|++||+++++++.+.+.. ....
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~---------------------------aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~ 56 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAAS---------------------------HGHQVLLYDISAEALTRAIDGIHARLNSRV 56 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999 8999999999999998865320 0000
Q ss_pred CCC-hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecC
Q psy11160 80 EPG-LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKST 157 (598)
Q Consensus 80 e~~-~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~ST 157 (598)
+.| +.+.-......+++.+++++ ++++||+||+|||.. +...+++++++.+.+++++|+ .+.||
T Consensus 57 ~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlVIeAVpe~-------------~~vk~~v~~~l~~~~~~~~IlasntSt 122 (483)
T 3mog_A 57 TRGKLTAETCERTLKRLIPVTDIH-ALAAADLVIEAASER-------------LEVKKALFAQLAEVCPPQTLLTTNTSS 122 (483)
T ss_dssp TTTSSCHHHHHHHHHTEEEECCGG-GGGGCSEEEECCCCC-------------HHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred HcCCCCHHHHHHHHhceeEeCCHH-HhcCCCEEEEcCCCc-------------HHHHHHHHHHHHHhhccCcEEEecCCC
Confidence 111 00000000113578899986 799999999999754 223467788899999999988 56899
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeE
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQI 237 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l 237 (598)
+++... +. .+.. | +. . .| .+.
T Consensus 123 i~i~~i---a~-------------------------------~~~~----------p-----------~~-~-ig--~hf 143 (483)
T 3mog_A 123 ISITAI---AA-------------------------------EIKN----------P-----------ER-V-AG--LHF 143 (483)
T ss_dssp SCHHHH---TT-------------------------------TSSS----------G-----------GG-E-EE--EEE
T ss_pred CCHHHH---HH-------------------------------HccC----------c-----------cc-e-EE--eee
Confidence 988532 21 0000 0 00 0 01 122
Q ss_pred EECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 238 LSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 238 ~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
++|.... +-..+++|... .+++++.+.++++.++. .++++++.. + +++||++.. ++||
T Consensus 144 -~~Pa~v~----------~Lvevv~g~~T--s~e~~~~~~~l~~~lGk-~~v~v~d~~-G---fi~Nr~l~~----~~~E 201 (483)
T 3mog_A 144 -FNPAPVM----------KLVEVVSGLAT--AAEVVEQLCELTLSWGK-QPVRCHSTP-G---FIVNRVARP----YYSE 201 (483)
T ss_dssp -CSSTTTC----------CEEEEEECSSC--CHHHHHHHHHHHHHTTC-EEEEEESCT-T---TTHHHHTHH----HHHH
T ss_pred -cChhhhC----------CeEEEecCCCC--CHHHHHHHHHHHHHhCC-EEEEEeccC-c---chHHHHHHH----HHHH
Confidence 2332211 11244566432 34788999999999984 566666432 2 788877665 7899
Q ss_pred HHHHHHHcCCCHHHHHHHHcC
Q psy11160 318 LSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l~~ 338 (598)
...++++.++|++++-+++..
T Consensus 202 a~~l~~~g~~~~~~id~a~~~ 222 (483)
T 3mog_A 202 AWRALEEQVAAPEVIDAALRD 222 (483)
T ss_dssp HHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHh
Confidence 999999999999999999974
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=150.95 Aligned_cols=308 Identities=16% Similarity=0.196 Sum_probs=169.9
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIY 79 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~ 79 (598)
||+ +|||+|||+|.||..+|..|++ .|++|++||+++++++.+++. ...+.
T Consensus 1 mm~-~mki~iiG~G~~G~~~a~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~~ 52 (359)
T 1bg6_A 1 MIE-SKTYAVLGLGNGGHAFAAYLAL---------------------------KGQSVLAWDIDAQRIKEIQDRGAIIAE 52 (359)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHHTSEEEE
T ss_pred CCC-cCeEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEeCCHHHHHHHHhcCCeEEe
Confidence 555 4799999999999999999999 899999999999999988752 22221
Q ss_pred CCChHHHHhhhcCCce-EEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 80 EPGLDEVVKKTRDVNL-FFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~-~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
..+++. ..++ ..+++++++++++|+||+|||++. ..++++.+.+.++++++|+...+.
T Consensus 53 ~~~~~~------~~~~~~~~~~~~~~~~~~D~vi~~v~~~~---------------~~~~~~~l~~~l~~~~~vv~~~~~ 111 (359)
T 1bg6_A 53 GPGLAG------TAHPDLLTSDIGLAVKDADVILIVVPAIH---------------HASIAANIASYISEGQLIILNPGA 111 (359)
T ss_dssp SSSCCE------EECCSEEESCHHHHHTTCSEEEECSCGGG---------------HHHHHHHHGGGCCTTCEEEESSCC
T ss_pred cccccc------ccccceecCCHHHHHhcCCEEEEeCCchH---------------HHHHHHHHHHhCCCCCEEEEcCCC
Confidence 111100 0122 467888888999999999987652 467778888999999988877554
Q ss_pred chHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEe-ccccchhhhhHHHHHhhcccCCceeeE
Q psy11160 159 PVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEK-STVPVRAAESIMNVLKANHKTNVQFQI 237 (598)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~e-STvP~gtt~~~~~~L~~~~~~g~~~~l 237 (598)
.+++-+ +... +.+.. +..+.+.+ .+.|.+....
T Consensus 112 ~~~~~~-~~~~---------------------------l~~~~-~~~v~~~~~~~~~~~~~~~----------------- 145 (359)
T 1bg6_A 112 TGGALE-FRKI---------------------------LRENG-APEVTIGETSSMLFTCRSE----------------- 145 (359)
T ss_dssp SSHHHH-HHHH---------------------------HHHTT-CCCCEEEEESSCSEEEECS-----------------
T ss_pred chHHHH-HHHH---------------------------HHhcC-CCCeEEEEecCCcEEEEeC-----------------
Confidence 445432 3221 11111 11222222 2333322110
Q ss_pred EECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC-CceE--------Eec-------CchhH----
Q psy11160 238 LSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP-RKHI--------LTT-------NTWSS---- 297 (598)
Q Consensus 238 ~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~-~~~v--------~~~-------~~~~A---- 297 (598)
.+|.. ..+..+.++.+|.......+++++.++++|..+.. .+.+ .+. +.+.+
T Consensus 146 -------gpg~v-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~ 217 (359)
T 1bg6_A 146 -------RPGQV-TVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYVAVENVLHTSLTNVNAVMHPLPTLLNAARCESGT 217 (359)
T ss_dssp -------STTEE-EEEEECSCEEEEEESGGGHHHHHHHHTTTCTTEEECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTC
T ss_pred -------CCCEE-EEEEeecceEEEeccccccHHHHHHHHHHhhhcEEcCChHhhhccCCCccccHHHHHhhhchhhcCC
Confidence 01211 11111123444432111122356666666654320 0000 000 00111
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcc-----------cccccccc-Cc-cccccchhhh
Q psy11160 298 ELSKLA---ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSR-----------IGAKFLQA-SV-GFGGSCFQKD 361 (598)
Q Consensus 298 e~~Kl~---~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~r-----------i~~~~l~~-~~-gfgg~cl~KD 361 (598)
++..+. .+.........++|+..++++.|++...+.+.+..... .++.+.+. ++ .+-+..+.||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~~e~~~~~~~~D 297 (359)
T 1bg6_A 218 PFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLNTRYFFED 297 (359)
T ss_dssp CCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSSCCHHHHHH
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCCCCCCccceecC
Confidence 011111 12235667788899999999999998777666553211 11111111 11 1233367888
Q ss_pred H----HHHHHHHHHcCCh-hHHHHHHHHHHHHhcc-c--CCCeEEEEeccccCCCCccc
Q psy11160 362 I----LNLVYICECLNLP-EVASYWQQLYESLFNT-V--SDKHIAILGFAFKKNTGDTR 412 (598)
Q Consensus 362 ~----~~L~~~a~~~G~~-~~~~~~~~~i~~~~~~-~--~~~~V~ilGlafK~~t~D~R 412 (598)
+ ..+.++|+++|++ .+.+.+.++++.+... . .++++..||++ +.+++|+|
T Consensus 298 ~~~~~g~~~~~a~~~gv~~P~~~~l~~~~~~~~~~~~~~~g~~~~~lgl~-~~~~~~~~ 355 (359)
T 1bg6_A 298 VSTGLVPLSELGRAVNVPTPLIDAVLDLISSLIDTDFRKEGRTLEKLGLS-GLTAAGIR 355 (359)
T ss_dssp HHTTHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCHHHHSCCTTTTTCT-TCCHHHHH
T ss_pred cCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHCCChhhcCCCHHhcCCC-CCCHHHHH
Confidence 7 7899999999987 3444444555544321 1 36677778988 77776655
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=140.06 Aligned_cols=233 Identities=12% Similarity=0.059 Sum_probs=151.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.|+|+|||+|.||..+|..|+. .|++ |++||+++++.+.+.+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~---------------------------~g~~~v~~~~~~~~~~~~~~~~--------- 53 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYR---------------------------KGFRIVQVYSRTEESARELAQK--------- 53 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH---------------------------HTCCEEEEECSSHHHHHHHHHH---------
T ss_pred CCeEEEEcCCHHHHHHHHHHHH---------------------------CCCeEEEEEeCCHHHHHHHHHH---------
Confidence 4799999999999999999999 7888 99999999999887642
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.++..++++.++++++|+||+|+|.+ .+.++++.+.+.++++++|+..|+..+.+.
T Consensus 54 ---------~g~~~~~~~~~~~~~~Dvvi~av~~~---------------~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~ 109 (266)
T 3d1l_A 54 ---------VEAEYTTDLAEVNPYAKLYIVSLKDS---------------AFAELLQGIVEGKREEALMVHTAGSIPMNV 109 (266)
T ss_dssp ---------TTCEEESCGGGSCSCCSEEEECCCHH---------------HHHHHHHHHHTTCCTTCEEEECCTTSCGGG
T ss_pred ---------cCCceeCCHHHHhcCCCEEEEecCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCchHH
Confidence 12456778877889999999998653 357778888888889999999888766432
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.. .+.. .+ .....+|..
T Consensus 110 --l~~-------------------------------------------------------~~~~---~~--~~~~~~~~~ 127 (266)
T 3d1l_A 110 --WEG-------------------------------------------------------HVPH---YG--VFYPMQTFS 127 (266)
T ss_dssp --STT-------------------------------------------------------TCSS---EE--EEEECCCC-
T ss_pred --HHH-------------------------------------------------------HHHh---cc--CcCCceecC
Confidence 111 0110 01 111233322
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCch---hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTW---SSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~---~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
..+. ..+.+.+.++.|+++ ++++.++++++.++. .++.+++.+ ....+|+++|.. . .+..++| .
T Consensus 128 g~~~---~~~~~~~~~v~~~~~-----~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~e--a 194 (266)
T 3d1l_A 128 KQRE---VDFKEIPFFIEASST-----EDAAFLKAIASTLSN-RVYDADSEQRKSLHLAAVFTCNFT-N-HMYALAA--E 194 (266)
T ss_dssp --CC---CCCTTCCEEEEESSH-----HHHHHHHHHHHTTCS-CEEECCHHHHHHHHHHHHHHHHHH-H-HHHHHHH--H
T ss_pred CCch---hhcCCCeEEEecCCH-----HHHHHHHHHHHhcCC-cEEEeCHHHHHHHHHHHHHHHHHH-H-HHHHHHH--H
Confidence 1111 123344444446543 578889999999873 455555433 457889998873 2 3344445 3
Q ss_pred HHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcC
Q psy11160 321 VCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLN 373 (598)
Q Consensus 321 la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G 373 (598)
++++.|+|.+++.+++.....-... +.+--...|+....|..-+....+.+.
T Consensus 195 l~~~~Gl~~~~~~~l~~~~~~~~~~-~~~~~~~~GP~~r~d~~~l~~~l~~l~ 246 (266)
T 3d1l_A 195 LLKKYNLPFDVMLPLIDETARKVHE-LEPKTAQTGPAIRYDENVIGNHLRMLA 246 (266)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHH-SCHHHHCCSTTTTTCHHHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHh-cChhhhCCCCCccCCHHHHHHHHHHHh
Confidence 7789999999998888754321000 111112456667777776665555544
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=142.95 Aligned_cols=263 Identities=13% Similarity=0.102 Sum_probs=151.6
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-----C-ceEEEEeCCHHHHHHHHc-
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-----N-IQVTVVDKSEERIRQWNS- 73 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g-~~v~~~d~~~~~~~~~~~- 73 (598)
|.+++|||+|||+|.||.++|..|++ . | ++|++||+ +++++.+++
T Consensus 4 m~~~~m~I~iiG~G~mG~~~a~~L~~---------------------------~~~~~~g~~~V~~~~r-~~~~~~l~~~ 55 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVGGYYGAMLAL---------------------------RAAATDGLLEVSWIAR-GAHLEAIRAA 55 (317)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHH---------------------------HHHHTTSSEEEEEECC-HHHHHHHHHH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHh---------------------------CccccCCCCCEEEEEc-HHHHHHHHhc
Confidence 44556899999999999999999999 7 8 99999999 888998886
Q ss_pred CCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 74 NKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 74 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
....+.++...+ ....+.++++.+ ++.++|+||+|||++. ++++++.+.+.++++++||
T Consensus 56 ~g~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~D~vil~vk~~~---------------~~~v~~~i~~~l~~~~~iv 114 (317)
T 2qyt_A 56 GGLRVVTPSRDF-----LARPTCVTDNPA-EVGTVDYILFCTKDYD---------------MERGVAEIRPMIGQNTKIL 114 (317)
T ss_dssp TSEEEECSSCEE-----EECCSEEESCHH-HHCCEEEEEECCSSSC---------------HHHHHHHHGGGEEEEEEEE
T ss_pred CCeEEEeCCCCe-----EEecceEecCcc-ccCCCCEEEEecCccc---------------HHHHHHHHHhhcCCCCEEE
Confidence 432222111000 012345566654 6789999999997652 5777888988888888887
Q ss_pred EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCc
Q psy11160 154 EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNV 233 (598)
Q Consensus 154 ~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~ 233 (598)
..++. ++..+.+.. .+....++ .|
T Consensus 115 ~~~nG-~~~~~~l~~-------------------------------~l~~~~v~-----------------------~g- 138 (317)
T 2qyt_A 115 PLLNG-ADIAERMRT-------------------------------YLPDTVVW-----------------------KG- 138 (317)
T ss_dssp ECSCS-SSHHHHHTT-------------------------------TSCTTTBC-----------------------EE-
T ss_pred EccCC-CCcHHHHHH-------------------------------HCCCCcEE-----------------------EE-
Confidence 76543 444433322 11111100 00
Q ss_pred eeeEEECCcccCcCchhhhcCCCCEEEEccC-CCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHH----
Q psy11160 234 QFQILSNPEFLSEGTAMTDLFNADRILIGGE-ETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFL---- 308 (598)
Q Consensus 234 ~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~-~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~---- 308 (598)
+....++. ..+|...+... ...+++|.. +.. ..+.+ .+.++|+..+. ...+.++...++..|++.|+..
T Consensus 139 -~~~~~a~~-~~pg~~~~~~~-g~~~~ig~~~~~~-~~~~~-~~~~ll~~~g~-~~~~~~di~~~~~~Kl~~N~~~~~~~ 212 (317)
T 2qyt_A 139 -CVYISARK-SAPGLITLEAD-RELFYFGSGLPEQ-TDDEV-RLAELLTAAGI-RAYNPTDIDWYIMKKFMMISVTATAT 212 (317)
T ss_dssp -EEEEEEEE-EETTEEEEEEE-EEEEEEECCSSSC-CHHHH-HHHHHHHHTTC-CEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEEEE-cCCCEEEEcCC-CceEEEcCCCCCC-cCHHH-HHHHHHHHCCC-CCEEchHHHHHHHHHHHHHHhhHHHH
Confidence 01111111 11222111111 112325653 211 12345 77888887763 3445678899999999999864
Q ss_pred ---------------HHHHHHHHHHHHHHHHcCCCHH--HHHHHHcC----Ccc-ccccccccCccccccchhhhHHHHH
Q psy11160 309 ---------------AQRISSINSLSAVCEATGADVS--EVAKAVGL----DSR-IGAKFLQASVGFGGSCFQKDILNLV 366 (598)
Q Consensus 309 ---------------~~~ia~~nE~~~la~~~gid~~--ev~~~l~~----~~r-i~~~~l~~~~gfgg~cl~KD~~~L~ 366 (598)
......++|+..++++.|++.. .+.+.+.. ..+ .++...+...|+... +.-...++.
T Consensus 213 al~g~~~g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~g~~~E-~~~~~g~~~ 291 (317)
T 2qyt_A 213 AYFDKPIGSILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRKMPPESTSSMHSDFLQGGSTE-VETLTGYVV 291 (317)
T ss_dssp HHHTSCHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC---------------------CTTTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCCCCChHHHHHHcCCccC-HHHHhhHHH
Confidence 4566899999999999999863 44454432 111 111112222222100 111266888
Q ss_pred HHHHHcCCh
Q psy11160 367 YICECLNLP 375 (598)
Q Consensus 367 ~~a~~~G~~ 375 (598)
++++++|++
T Consensus 292 ~~a~~~gv~ 300 (317)
T 2qyt_A 292 REAEALRVD 300 (317)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 899999986
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-13 Score=144.93 Aligned_cols=205 Identities=18% Similarity=0.248 Sum_probs=136.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH--------H-HcC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ--------W-NSN 74 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~--------~-~~~ 74 (598)
.++||+|||+|.||.+||..|+. +|++|++||+++++... + .+|
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~---------------------------aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G 105 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGL---------------------------AGIETFLVVRNEQRCKQELEVMYAREKSFK 105 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEECcHHHHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999 89999999999985321 1 122
Q ss_pred CCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-
Q psy11160 75 KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV- 153 (598)
Q Consensus 75 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv- 153 (598)
.. .+...+.. ..++++++|++ ++++||+||+|||.. +...+.++++|.+.+++++|++
T Consensus 106 ~l--~~~~~~~~-----~~~i~~t~dl~-al~~aDlVIeAVpe~-------------~~vk~~v~~~l~~~~~~~aIlas 164 (460)
T 3k6j_A 106 RL--NDKRIEKI-----NANLKITSDFH-KLSNCDLIVESVIED-------------MKLKKELFANLENICKSTCIFGT 164 (460)
T ss_dssp SC--CHHHHHHH-----HTTEEEESCGG-GCTTCSEEEECCCSC-------------HHHHHHHHHHHHTTSCTTCEEEE
T ss_pred CC--CHHHHHHH-----hcceEEeCCHH-HHccCCEEEEcCCCC-------------HHHHHHHHHHHHhhCCCCCEEEe
Confidence 11 00001111 24688999986 799999999999754 2344667889999999999985
Q ss_pred EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCc
Q psy11160 154 EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNV 233 (598)
Q Consensus 154 ~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~ 233 (598)
++||+++.. ++. .++. + +. . .|.
T Consensus 165 nTSsl~i~~---ia~-------------------------------~~~~-------------------p--~r-~-iG~ 187 (460)
T 3k6j_A 165 NTSSLDLNE---ISS-------------------------------VLRD-------------------P--SN-L-VGI 187 (460)
T ss_dssp CCSSSCHHH---HHT-------------------------------TSSS-------------------G--GG-E-EEE
T ss_pred cCCChhHHH---HHH-------------------------------hccC-------------------C--cc-e-EEE
Confidence 578887743 221 0000 0 00 0 111
Q ss_pred eeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHH
Q psy11160 234 QFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRIS 313 (598)
Q Consensus 234 ~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia 313 (598)
+. ++|....+ +. -|+.|... .+++++.+.++++.+++ .++.+++ ..+ .++|+++. .
T Consensus 188 --Hf-fnPv~~m~------Lv---EIv~g~~T---s~e~~~~~~~l~~~lGk-~~v~v~d-~pG---fi~Nril~----~ 243 (460)
T 3k6j_A 188 --HF-FNPANVIR------LV---EIIYGSHT---SSQAIATAFQACESIKK-LPVLVGN-CKS---FVFNRLLH----V 243 (460)
T ss_dssp --EC-CSSTTTCC------EE---EEECCSSC---CHHHHHHHHHHHHHTTC-EEEEESS-CCH---HHHHHHHH----H
T ss_pred --Ee-cchhhhCC------EE---EEEeCCCC---CHHHHHHHHHHHHHhCC-EEEEEec-ccH---HHHHHHHH----H
Confidence 11 24543211 11 25555432 24789999999999974 5666664 222 35565554 4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHc
Q psy11160 314 SINSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 314 ~~nE~~~la~~~gid~~ev~~~l~ 337 (598)
+++|+..++++.|++++++-+++.
T Consensus 244 ~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 244 YFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 789999999999999999999986
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=141.17 Aligned_cols=204 Identities=14% Similarity=0.132 Sum_probs=133.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+|+|+|||+ |.||.++|..|++ .|++|++||+++++.+.+.+. |
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~---------------------------~g~~V~~~~r~~~~~~~~~~~-------g- 55 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHD---------------------------SAHHLAAIEIAPEGRDRLQGM-------G- 55 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---------------------------SSSEEEEECCSHHHHHHHHHT-------T-
T ss_pred CCEEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHhc-------C-
Confidence 479999999 9999999999999 899999999999999887741 1
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+..+ ++.+++++||+||+|||.+ .+.++++.+.+.++++++|+..||..+-..
T Consensus 56 -----------~~~~-~~~~~~~~aDvVi~av~~~---------------~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~ 108 (286)
T 3c24_A 56 -----------IPLT-DGDGWIDEADVVVLALPDN---------------IIEKVAEDIVPRVRPGTIVLILDAAAPYAG 108 (286)
T ss_dssp -----------CCCC-CSSGGGGTCSEEEECSCHH---------------HHHHHHHHHGGGSCTTCEEEESCSHHHHHT
T ss_pred -----------CCcC-CHHHHhcCCCEEEEcCCch---------------HHHHHHHHHHHhCCCCCEEEECCCCchhHH
Confidence 1112 4556789999999998643 367888889888999999998777653211
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEE-ECCc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL-SNPE 242 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~-~~Pe 242 (598)
+ ++ ...+ ..++ ..|.
T Consensus 109 --l-----------------------------------------------------------~~-~~~~--~~~v~~~P~ 124 (286)
T 3c24_A 109 --V-----------------------------------------------------------MP-ERAD--ITYFIGHPC 124 (286)
T ss_dssp --C-----------------------------------------------------------SC-CCTT--SEEEEEEEC
T ss_pred --H-----------------------------------------------------------Hh-hhCC--CeEEecCCC
Confidence 0 00 0011 1122 3343
Q ss_pred ccCc---Cc---hhhhcCC----CCEEE--EccCCCchhHHHHHHHHHHHhcccCC--ceEEecCchhHHHHHHHHHHHH
Q psy11160 243 FLSE---GT---AMTDLFN----ADRIL--IGGEETPEGYAAIESLSWVYEHWIPR--KHILTTNTWSSELSKLAANAFL 308 (598)
Q Consensus 243 ~~~~---G~---a~~~~~~----p~rv~--vGg~~~~~~~~a~~~l~~ly~~~~~~--~~v~~~~~~~Ae~~Kl~~N~~~ 308 (598)
+..+ +. ...+.+. ...++ .+++. ++++.++++|+.++.+ .++.++..+.+...|.+.|.+.
T Consensus 125 ~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~-----~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~ 199 (286)
T 3c24_A 125 HPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPE-----EHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVA 199 (286)
T ss_dssp CSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCT-----HHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTH
T ss_pred CccccccccchhhccCcccccccceeeeeccCCCH-----HHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHH
Confidence 3211 11 1222110 01122 34433 5788899999998721 2444544445555588888665
Q ss_pred HHHHHHHHH-HHHHHHHcCCCHHHHHHHHcCC
Q psy11160 309 AQRISSINS-LSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 309 ~~~ia~~nE-~~~la~~~gid~~ev~~~l~~~ 339 (598)
...+..+.| +...+...|+|.+++.+++...
T Consensus 200 ~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~ 231 (286)
T 3c24_A 200 MPFVETMVHAVDECADRYGIDRQAALDFMIGH 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 555555555 6666777799999999988654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-12 Score=132.81 Aligned_cols=195 Identities=12% Similarity=0.138 Sum_probs=129.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++|+|||+|.||..+|..|+. .|+ +|++||+++++.+.+++...
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~---------------------------~g~~~~V~~~d~~~~~~~~~~~~g~------- 47 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRR---------------------------SGFKGKIYGYDINPESISKAVDLGI------- 47 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHH---------------------------TTCCSEEEEECSCHHHHHHHHHTTS-------
T ss_pred cEEEEEecCHHHHHHHHHHHh---------------------------cCCCcEEEEEeCCHHHHHHHHHCCC-------
Confidence 689999999999999999999 788 99999999999887764210
Q ss_pred HHHHhhhcCCceEEecCHHHHhc-cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ-KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
....++++.++++ +||+||+|||.+ .+.++++.+.+.++++++|++.|++.+..
T Consensus 48 ----------~~~~~~~~~~~~~~~aDvVilavp~~---------------~~~~v~~~l~~~l~~~~iv~~~~~~~~~~ 102 (281)
T 2g5c_A 48 ----------IDEGTTSIAKVEDFSPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKL 102 (281)
T ss_dssp ----------CSEEESCGGGGGGTCCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEECCSCCTHH
T ss_pred ----------cccccCCHHHHhcCCCCEEEEcCCHH---------------HHHHHHHHHHhhCCCCcEEEECCCCcHHH
Confidence 1134567777888 999999998653 35677788888999999999988888766
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
.+.+...+ ..+ ++ | .+.+..++
T Consensus 103 ~~~l~~~l-------------------------------~~~---~v----~--------------------~~p~~~~~ 124 (281)
T 2g5c_A 103 VYDLENIL-------------------------------GKR---FV----G--------------------GHPIAGTE 124 (281)
T ss_dssp HHHHHHHH-------------------------------GGG---EE----C--------------------EEEECCCS
T ss_pred HHHHHHhc-------------------------------ccc---ce----e--------------------eccccCCc
Confidence 55444311 110 00 0 01112222
Q ss_pred ccCcCchhhhcCCCC-EEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNAD-RILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~-rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
...++.+..+++... .++..+.. ..+++.+.++++|+.++. ..+.+++....+.+|++.|....+.+++++.+..
T Consensus 125 ~~gp~~a~~~l~~g~~~~~~~~~~--~~~~~~~~v~~l~~~~g~-~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~ 200 (281)
T 2g5c_A 125 KSGVEYSLDNLYEGKKVILTPTKK--TDKKRLKLVKRVWEDVGG-VVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIH 200 (281)
T ss_dssp CCSGGGCCSSTTTTCEEEECCCSS--SCHHHHHHHHHHHHHTTC-EEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cCChhhhhhHHhCCCCEEEecCCC--CCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333333333333 34331110 113578889999999863 3334454566889999999888777888776654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=132.01 Aligned_cols=212 Identities=14% Similarity=0.166 Sum_probs=139.0
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCC----
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKL---- 76 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~---- 76 (598)
||+ ++||+|||+|.||.++|..|+. .|++|++||+++++++.+.+...
T Consensus 1 Mm~-~~kV~VIGaG~mG~~iA~~la~---------------------------~G~~V~l~d~~~~~~~~~~~~i~~~~~ 52 (283)
T 4e12_A 1 MTG-ITNVTVLGTGVLGSQIAFQTAF---------------------------HGFAVTAYDINTDALDAAKKRFEGLAA 52 (283)
T ss_dssp CCS-CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCC-CCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 554 6799999999999999999999 89999999999999887664200
Q ss_pred -------CCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCC
Q psy11160 77 -------PIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDN 149 (598)
Q Consensus 77 -------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 149 (598)
.+.....++.. .+++.++++.+++++||+||+|||.. +.....+++++.+.++++
T Consensus 53 ~~~~~g~~~~~~~~~~~~-----~~i~~~~~~~~~~~~aDlVi~av~~~-------------~~~~~~v~~~l~~~~~~~ 114 (283)
T 4e12_A 53 VYEKEVAGAADGAAQKAL-----GGIRYSDDLAQAVKDADLVIEAVPES-------------LDLKRDIYTKLGELAPAK 114 (283)
T ss_dssp HHHHHSTTCTTTHHHHHH-----HHCEEESCHHHHTTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTT
T ss_pred HHHHhcccCCHHHHHHHH-----cCeEEeCCHHHHhccCCEEEEeccCc-------------HHHHHHHHHHHHhhCCCC
Confidence 01111111111 24678899988899999999999753 234567788899999999
Q ss_pred cEEE-EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhc
Q psy11160 150 KIVV-EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKAN 228 (598)
Q Consensus 150 ~ivv-~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~ 228 (598)
++++ +.|++++.. ++.. +..+
T Consensus 115 ~il~s~tS~~~~~~---la~~-------------------------------------------------------~~~~ 136 (283)
T 4e12_A 115 TIFATNSSTLLPSD---LVGY-------------------------------------------------------TGRG 136 (283)
T ss_dssp CEEEECCSSSCHHH---HHHH-------------------------------------------------------HSCG
T ss_pred cEEEECCCCCCHHH---HHhh-------------------------------------------------------cCCC
Confidence 9988 567776532 2221 1000
Q ss_pred ccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHH
Q psy11160 229 HKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFL 308 (598)
Q Consensus 229 ~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~ 308 (598)
.+ -...+. ++|....+ + ..++++... .+++++.++++++.++. .++.++....+ .++++++.
T Consensus 137 ~~-~ig~h~-~~p~~~~~------l----vevv~~~~t--~~~~~~~~~~l~~~~g~-~~v~v~~~~~g---~i~nr~~~ 198 (283)
T 4e12_A 137 DK-FLALHF-ANHVWVNN------T----AEVMGTTKT--DPEVYQQVVEFASAIGM-VPIELKKEKAG---YVLNSLLV 198 (283)
T ss_dssp GG-EEEEEE-CSSTTTSC------E----EEEEECTTS--CHHHHHHHHHHHHHTTC-EEEECSSCCTT---TTHHHHHH
T ss_pred cc-eEEEcc-CCCcccCc------e----EEEEeCCCC--CHHHHHHHHHHHHHcCC-EEEEEecCCCC---EEehHHHH
Confidence 00 001111 13432211 1 123444321 24688999999999974 45555332222 14555544
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 309 AQRISSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 309 ~~~ia~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
.+++|...++++.+++++++-+++..
T Consensus 199 ----~~~~ea~~l~~~g~~~~~~id~~~~~ 224 (283)
T 4e12_A 199 ----PLLDAAAELLVDGIADPETIDKTWRI 224 (283)
T ss_dssp ----HHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 57899999999999999999999864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.4e-12 Score=131.27 Aligned_cols=194 Identities=13% Similarity=0.146 Sum_probs=127.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.||.++|..|++ .|+ +|++||+++++++.+.+..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~---------------------------~G~~~~V~~~dr~~~~~~~a~~~G------- 78 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRR---------------------------SGFKGKIYGYDINPESISKAVDLG------- 78 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHH---------------------------TTCCSEEEEECSCHHHHHHHHHTT-------
T ss_pred CCEEEEEeeCHHHHHHHHHHHh---------------------------CCCCCEEEEEECCHHHHHHHHHCC-------
Confidence 4799999999999999999999 788 9999999999988776421
Q ss_pred hHHHHhhhcCCceEEecCHHH-HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKS-AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.....++++++ ++++||+||+|||.. .+.++++++.+.++++++|++.+++.+.
T Consensus 79 ----------~~~~~~~~~~~~~~~~aDvVilavp~~---------------~~~~vl~~l~~~l~~~~iv~d~~Svk~~ 133 (314)
T 3ggo_A 79 ----------IIDEGTTSIAKVEDFSPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGK 133 (314)
T ss_dssp ----------SCSEEESCTTGGGGGCCSEEEECSCGG---------------GHHHHHHHHHHHSCTTCEEEECCSCCTH
T ss_pred ----------CcchhcCCHHHHhhccCCEEEEeCCHH---------------HHHHHHHHHhhccCCCcEEEECCCCcHH
Confidence 01145678887 899999999998643 3567788999999999999999998876
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
..+.+... +.... .+.+-+..|
T Consensus 134 ~~~~~~~~-------------------------------------------------------l~~~~---v~~hPm~G~ 155 (314)
T 3ggo_A 134 LVYDLENI-------------------------------------------------------LGKRF---VGGHPIAGT 155 (314)
T ss_dssp HHHHHHHH-------------------------------------------------------HGGGE---ECEEECCCC
T ss_pred HHHHHHHh-------------------------------------------------------cCCCE---EecCcccCC
Confidence 66544331 11000 000112222
Q ss_pred cccCcCchhhhcCC-CCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFN-ADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSL 318 (598)
Q Consensus 242 e~~~~G~a~~~~~~-p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~ 318 (598)
+...+..+..+++. ...+++.+.. ..+++++.++++++.++. .++.++....-..++++..+-..+..++++.+
T Consensus 156 e~sG~~~A~~~Lf~g~~~il~~~~~--~~~~~~~~v~~l~~~~G~-~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~~ 230 (314)
T 3ggo_A 156 EKSGVEYSLDNLYEGKKVILTPTKK--TDKKRLKLVKRVWEDVGG-VVEYMSPELHDYVFGVVSHLPHAVAFALVDTL 230 (314)
T ss_dssp CCCSGGGCCTTTTTTCEEEECCCTT--SCHHHHHHHHHHHHHTTC-EEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhcCCEEEEEeCCC--CCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22112222223322 2234443221 123688999999999973 34445555677788888766665555555443
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=137.27 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=150.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.++|..|++ .|++|++||+++++++.++.... .+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~---------------------------~g~~V~~~~r~~~~~~~l~~~~~----~~~-- 47 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCK---------------------------QGHEVQGWLRVPQPYCSVNLVET----DGS-- 47 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCSEEEEEEECT----TSC--
T ss_pred CeEEEECcCHHHHHHHHHHHh---------------------------CCCCEEEEEcCccceeeEEEEcC----CCc--
Confidence 589999999999999999999 89999999999876554432100 000
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
. ...... .++. ++++++|+||+|||.+ .++++++.+.+.++++++|+..++ ..+..+.
T Consensus 48 ---~-~~~~~~-~~~~-~~~~~~d~vi~~v~~~---------------~~~~v~~~l~~~l~~~~~vv~~~~-g~~~~~~ 105 (291)
T 1ks9_A 48 ---I-FNESLT-ANDP-DFLATSDLLLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIHN-GMGTIEE 105 (291)
T ss_dssp ---E-EEEEEE-ESCH-HHHHTCSEEEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEECS-SSCTTGG
T ss_pred ---e-eeeeee-ecCc-cccCCCCEEEEEecHH---------------hHHHHHHHHHhhCCCCCEEEEecC-CCCcHHH
Confidence 0 001122 2444 5788999999998754 267788899999988888877654 3344322
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
+.. .+.+ + +....+.+ .....| ...
T Consensus 106 l~~-------------------------------~~~~---~-~~g~~~~~-------------------~~~~~p-~~~ 130 (291)
T 1ks9_A 106 LQN-------------------------------IQQP---L-LMGTTTHA-------------------ARRDGN-VII 130 (291)
T ss_dssp GTT-------------------------------CCSC---E-EEEEECCE-------------------EEEETT-EEE
T ss_pred HHH-------------------------------hcCC---e-EEEEEeEc-------------------cEEcCC-EEE
Confidence 221 1111 0 00000000 012233 111
Q ss_pred cCchhhhcCCCCEEEE-ccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHH----------------
Q psy11160 246 EGTAMTDLFNADRILI-GGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFL---------------- 308 (598)
Q Consensus 246 ~G~a~~~~~~p~rv~v-Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~---------------- 308 (598)
....+.. .+.. +++. +.++.++++|+.++. ...+.++...+...|++.|...
T Consensus 131 --~~~~g~~---~i~~~~~~~-----~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~ 199 (291)
T 1ks9_A 131 --HVANGIT---HIGPARQQD-----GDYSYLADILQTVLP-DVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRH 199 (291)
T ss_dssp --EEECCCE---EEEESSGGG-----TTCTHHHHHHHTTSS-CEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGG
T ss_pred --Eecccce---EEccCCCCc-----chHHHHHHHHHhcCC-CCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHh
Confidence 0111111 1222 2211 346778889998863 4555678899999999999987
Q ss_pred --HHHHHHHHHHHHHHHHcCCCH--HHH----HHHHcCCc-cccccccccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 309 --AQRISSINSLSAVCEATGADV--SEV----AKAVGLDS-RIGAKFLQASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 309 --~~~ia~~nE~~~la~~~gid~--~ev----~~~l~~~~-ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+.....++|+..++++.|++. .++ .+++.... ..++.+.+...|... -+..+..++.++++++|++
T Consensus 200 ~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~ssm~~d~~~g~~~-e~~~~~g~~~~~a~~~gv~ 274 (291)
T 1ks9_A 200 HPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHT-EIDYINGFLLRRARAHGIA 274 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHHHHHHTTCCC-SGGGTHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHcCCcc-HHHHHHHHHHHHHHHhCCC
Confidence 788899999999999999986 454 33333221 122222222222211 2335688899999999987
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=149.54 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=134.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++||+|||+|.||.+||..|+. .|++|++||+++++++...+.. +..+
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~---------------------------aG~~V~l~D~~~~~~~~~~~~i----~~~l 361 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSAS---------------------------KGTPILMKDINEHGIEQGLAEA----AKLL 361 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHH---------------------------TTCCEEEECSSHHHHHHHHHHH----HHHH
T ss_pred cCCEEEEECCChhhHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHHH----HHHH
Confidence 46799999999999999999999 8999999999999887632110 0111
Q ss_pred HHHHhhh---------cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-
Q psy11160 84 DEVVKKT---------RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV- 153 (598)
Q Consensus 84 ~~~~~~~---------~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv- 153 (598)
+.++++. ...++++++|+ +++++||+||+|||.+. ...+.+++++.+.+++++|++
T Consensus 362 ~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIeaV~e~~-------------~vk~~v~~~l~~~~~~~~Ilas 427 (715)
T 1wdk_A 362 VGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGNVDLVVEAVVENP-------------KVKQAVLAEVENHVREDAILAS 427 (715)
T ss_dssp HHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGGCSEEEECCCSCH-------------HHHHHHHHHHHTTSCTTCEEEE
T ss_pred HHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCCCCEEEEcCCCCH-------------HHHHHHHHHHHhhCCCCeEEEe
Confidence 1111110 01247888898 68999999999997642 234567788999999999886
Q ss_pred EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCc
Q psy11160 154 EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNV 233 (598)
Q Consensus 154 ~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~ 233 (598)
++||+++.. ++. .+.. | +. . .|.
T Consensus 428 ntStl~i~~---la~-------------------------------~~~~----------~-----------~~-~-ig~ 450 (715)
T 1wdk_A 428 NTSTISISL---LAK-------------------------------ALKR----------P-----------EN-F-VGM 450 (715)
T ss_dssp CCSSSCHHH---HGG-------------------------------GCSC----------G-----------GG-E-EEE
T ss_pred CCCCCCHHH---HHH-------------------------------HhcC----------c-----------cc-e-EEE
Confidence 567777643 221 0000 0 00 0 111
Q ss_pred eeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHH
Q psy11160 234 QFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRIS 313 (598)
Q Consensus 234 ~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia 313 (598)
++ ++|....+ +. -++.|... .+++++.+.++++.++. .++++++. .+ .++++++ +.
T Consensus 451 --hf-~~P~~~~~------lv---evv~g~~t---~~e~~~~~~~l~~~lGk-~~v~v~d~-~G---fi~Nril----~~ 506 (715)
T 1wdk_A 451 --HF-FNPVHMMP------LV---EVIRGEKS---SDLAVATTVAYAKKMGK-NPIVVNDC-PG---FLVNRVL----FP 506 (715)
T ss_dssp --EC-CSSTTTCC------EE---EEEECSSC---CHHHHHHHHHHHHHTTC-EEEEEESC-TT---TTHHHHH----HH
T ss_pred --Ec-cCCcccCc------eE---EEEECCCC---CHHHHHHHHHHHHHhCC-EeEEEcCC-CC---hhhhHHH----HH
Confidence 11 24543211 11 24555432 23788999999999974 56666643 11 1344433 36
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Q psy11160 314 SINSLSAVCEATGADVSEVAKAV 336 (598)
Q Consensus 314 ~~nE~~~la~~~gid~~ev~~~l 336 (598)
++||+..+++. |+|++++-+++
T Consensus 507 ~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 507 YFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHH
Confidence 78999999997 99999999998
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-12 Score=124.57 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=76.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc----eEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI----QVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
+|||+|||+|.||.++|..|++ .|+ +|++||+++++++.+.+.
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~---------------------------~g~~~~~~V~~~~r~~~~~~~~~~~------ 48 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMIN---------------------------KNIVSSNQIICSDLNTANLKNASEK------ 48 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH---------------------------TTSSCGGGEEEECSCHHHHHHHHHH------
T ss_pred CCeEEEECccHHHHHHHHHHHh---------------------------CCCCCCCeEEEEeCCHHHHHHHHHH------
Confidence 3699999999999999999999 787 999999999999988631
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-EecCCc
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV-EKSTVP 159 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv-~~STv~ 159 (598)
.++..++++.+++++||+||+||| |. .++++++++.+.++++++|| +.++++
T Consensus 49 ------------~g~~~~~~~~e~~~~aDvVilav~-~~--------------~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 49 ------------YGLTTTTDNNEVAKNADILILSIK-PD--------------LYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp ------------HCCEECSCHHHHHHHCSEEEECSC-TT--------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred ------------hCCEEeCChHHHHHhCCEEEEEeC-HH--------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 134567888889999999999994 32 36777888888888888777 455666
Q ss_pred hH
Q psy11160 160 VR 161 (598)
Q Consensus 160 ~~ 161 (598)
..
T Consensus 102 ~~ 103 (247)
T 3gt0_A 102 IE 103 (247)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-12 Score=131.39 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=78.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHH--HHHHHHcCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEE--RIRQWNSNKLP 77 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~--~~~~~~~~~~~ 77 (598)
++|||+|||+|.||.+||..|++ .| ++|++||++++ +++.+++
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~---------------------------~G~~~~~~V~v~~r~~~~~~~~~l~~---- 69 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTA---------------------------AGVLAAHKIMASSPDMDLATVSALRK---- 69 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHH---------------------------TTSSCGGGEEEECSCTTSHHHHHHHH----
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---------------------------CCCCCcceEEEECCCccHHHHHHHHH----
Confidence 35799999999999999999999 77 89999999986 7777653
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.+++.++++.+++++||+||+||| |. .+++++++|.+.++++++||..|+
T Consensus 70 ---------------~G~~~~~~~~e~~~~aDvVilav~-~~--------------~~~~vl~~l~~~l~~~~ivvs~s~ 119 (322)
T 2izz_A 70 ---------------MGVKLTPHNKETVQHSDVLFLAVK-PH--------------IIPFILDEIGADIEDRHIVVSCAA 119 (322)
T ss_dssp ---------------HTCEEESCHHHHHHHCSEEEECSC-GG--------------GHHHHHHHHGGGCCTTCEEEECCT
T ss_pred ---------------cCCEEeCChHHHhccCCEEEEEeC-HH--------------HHHHHHHHHHhhcCCCCEEEEeCC
Confidence 135667788888999999999997 32 477888889888988999988764
Q ss_pred -Cch
Q psy11160 158 -VPV 160 (598)
Q Consensus 158 -v~~ 160 (598)
++.
T Consensus 120 gi~~ 123 (322)
T 2izz_A 120 GVTI 123 (322)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 443
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-12 Score=143.69 Aligned_cols=210 Identities=14% Similarity=0.149 Sum_probs=134.8
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCC----CCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKL----PIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~----~~~ 79 (598)
.++||+|||+|.||.+||..|+. +||+|++||+++++++...+... ...
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~---------------------------aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~ 363 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALIL---------------------------SNYPVILKEVNEKFLEAGIGRVKANLQSRV 363 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred cCcEEEEEcCCHhhHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999 89999999999998876532100 000
Q ss_pred CCC-hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-EecC
Q psy11160 80 EPG-LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV-EKST 157 (598)
Q Consensus 80 e~~-~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv-~~ST 157 (598)
+.| +.+.-......+++.++|+ +++++||+||+|||.+. ...+.+++++.+.+++++|++ ++||
T Consensus 364 ~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIeaVpe~~-------------~vk~~v~~~l~~~~~~~~IlasntSt 429 (725)
T 2wtb_A 364 RKGSMSQEKFEKTMSLLKGSLDY-ESFRDVDMVIEAVIENI-------------SLKQQIFADLEKYCPQHCILASNTST 429 (725)
T ss_dssp C----CTTHHHHTTTSEEEESSS-GGGTTCSEEEECCCSCH-------------HHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred hcCCCCHHHHHHHhcceEEeCCH-HHHCCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence 000 0000000112468889998 58999999999997642 234567788999999999885 4677
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeE
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQI 237 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l 237 (598)
+++.+. +. .+.. | +. . .| .++
T Consensus 430 l~i~~l---a~-------------------------------~~~~----------p-----------~~-~-iG--~hf 450 (725)
T 2wtb_A 430 IDLNKI---GE-------------------------------RTKS----------Q-----------DR-I-VG--AHF 450 (725)
T ss_dssp SCHHHH---TT-------------------------------TCSC----------T-----------TT-E-EE--EEE
T ss_pred CCHHHH---HH-------------------------------HhcC----------C-----------CC-E-EE--ecC
Confidence 777432 11 0000 0 00 0 11 122
Q ss_pred EECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 238 LSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 238 ~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
++|....+ +. -|+.|... .+++++.+.++++.++. .++++++. .+ .++|+++ +.++||
T Consensus 451 -~~P~~~~~------lv---evv~g~~t---~~e~~~~~~~l~~~lGk-~~v~v~d~-~G---fi~Nril----~~~~~E 508 (725)
T 2wtb_A 451 -FSPAHIMP------LL---EIVRTNHT---SAQVIVDLLDVGKKIKK-TPVVVGNC-TG---FAVNRMF----FPYTQA 508 (725)
T ss_dssp -CSSTTTCC------EE---EEEECSSC---CHHHHHHHHHHHHHTTC-EEEEEESS-TT---TTHHHHH----HHHHHH
T ss_pred -CCCcccCc------eE---EEEECCCC---CHHHHHHHHHHHHHhCC-EEEEECCC-cc---HHHHHHH----HHHHHH
Confidence 34543211 11 24555432 23788999999999974 56666643 11 1344433 357899
Q ss_pred HHHHHHHcCCCHHHHHHHH
Q psy11160 318 LSAVCEATGADVSEVAKAV 336 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l 336 (598)
+..+++. |+|++++-+++
T Consensus 509 a~~l~~~-G~~~e~id~~~ 526 (725)
T 2wtb_A 509 AMFLVEC-GADPYLIDRAI 526 (725)
T ss_dssp HHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHH
Confidence 9999998 99999999998
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=135.18 Aligned_cols=207 Identities=12% Similarity=0.148 Sum_probs=134.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|+|||+|.||.++|..|+. +|++|++||+++++++...+.. +..++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~---------------------------~G~~V~l~D~~~~~~~~~~~~i----~~~l~ 85 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFAR---------------------------VGISVVAVESDPKQLDAAKKII----TFTLE 85 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECSSHHHHHHHHHHH----HHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHHHH----HHHHH
Confidence 5789999999999999999999 8999999999999888765311 01122
Q ss_pred HHHhhhc-------CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTR-------DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~-------~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
..+.+.. ....+.++++ +++++||+||+|||.. +.....+++++.+.++++++|+. ||
T Consensus 86 ~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~aDlVIeaVpe~-------------~~~k~~v~~~l~~~~~~~~ii~s-nT 150 (463)
T 1zcj_A 86 KEASRAHQNGQASAKPKLRFSSST-KELSTVDLVVEAVFED-------------MNLKKKVFAELSALCKPGAFLCT-NT 150 (463)
T ss_dssp HHHHHHHHTTCCCCCCCEEEESCG-GGGTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEE-CC
T ss_pred HHHHcCCCCHHHHHHHHhhhcCCH-HHHCCCCEEEEcCCCC-------------HHHHHHHHHHHHhhCCCCeEEEe-CC
Confidence 2221110 1224567888 5789999999999653 33456778889999999998875 77
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeE
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQI 237 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l 237 (598)
..+..+ +++.. +.. .... .| .++
T Consensus 151 s~~~~~-~la~~-------------------------------~~~----------------------~~~~-ig--~hf 173 (463)
T 1zcj_A 151 SALNVD-DIASS-------------------------------TDR----------------------PQLV-IG--THF 173 (463)
T ss_dssp SSSCHH-HHHTT-------------------------------SSC----------------------GGGE-EE--EEE
T ss_pred CCcCHH-HHHHH-------------------------------hcC----------------------Ccce-EE--eec
Confidence 776655 34320 000 0000 12 222
Q ss_pred EECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 238 LSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 238 ~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
. +|....+ +. -++.|... .+++++.+.++++.+++ .++++++. .+. ++++++. .+.+|
T Consensus 174 ~-~P~~~~~------lv---evv~g~~t---~~e~~~~~~~l~~~lGk-~~v~v~~~-~gf---i~Nrll~----~~~~e 231 (463)
T 1zcj_A 174 F-SPAHVMR------LL---EVIPSRYS---SPTTIATVMSLSKKIGK-IGVVVGNC-YGF---VGNRMLA----PYYNQ 231 (463)
T ss_dssp C-SSTTTCC------EE---EEEECSSC---CHHHHHHHHHHHHHTTC-EEEEBCCS-TTT---THHHHHH----HHHHH
T ss_pred C-CCcccce------eE---EEeCCCCC---CHHHHHHHHHHHHHhCC-EEEEECCC-ccH---HHHHHHH----HHHHH
Confidence 2 6654221 11 25454332 24788999999999874 55666542 221 3444333 35699
Q ss_pred HHHHHHHcCCCHHHHHHHHc
Q psy11160 318 LSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l~ 337 (598)
...+++. |++++++-+++.
T Consensus 232 a~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 232 GFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp HHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHH
Confidence 9999887 899999999996
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=124.29 Aligned_cols=194 Identities=10% Similarity=0.148 Sum_probs=125.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+|.||..++..|++ .|++|++||+++++.+.+.+..
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~---------------------------~g~~v~~~~~~~~~~~~~~~~~--------- 46 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQ---------------------------TPHELIISGSSLERSKEIAEQL--------- 46 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT---------------------------SSCEEEEECSSHHHHHHHHHHH---------
T ss_pred ccEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEECCCHHHHHHHHHHc---------
Confidence 5799999999999999999998 7899999999999998876410
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe-cCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK-STVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~-STv~~~~~ 163 (598)
++..++++.++++++|+||+|+| |. .+.++++. +.++++++.. +++++.+.
T Consensus 47 ---------g~~~~~~~~~~~~~~D~Vi~~v~-~~--------------~~~~v~~~----l~~~~~vv~~~~~~~~~~l 98 (259)
T 2ahr_A 47 ---------ALPYAMSHQDLIDQVDLVILGIK-PQ--------------LFETVLKP----LHFKQPIISMAAGISLQRL 98 (259)
T ss_dssp ---------TCCBCSSHHHHHHTCSEEEECSC-GG--------------GHHHHHTT----SCCCSCEEECCTTCCHHHH
T ss_pred ---------CCEeeCCHHHHHhcCCEEEEEeC-cH--------------hHHHHHHH----hccCCEEEEeCCCCCHHHH
Confidence 12345678888899999999987 32 23343333 4477888877 46776543
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCC-ceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDN-KIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~-~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++. ..+ .++ . .+|. .|.
T Consensus 99 ~~~~----------------------------------~~~~~~v--~-~~p~------------------------~~~ 117 (259)
T 2ahr_A 99 ATFV----------------------------------GQDLPLL--R-IMPN------------------------MNA 117 (259)
T ss_dssp HHHH----------------------------------CTTSCEE--E-EECC------------------------GGG
T ss_pred HHhc----------------------------------CCCCCEE--E-EcCC------------------------chH
Confidence 2211 111 110 0 1110 111
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA--NAFLAQRISSINSLSA 320 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~--N~~~~~~ia~~nE~~~ 320 (598)
....| +..++.|+... +++++.++++|+.++ ..+.++.......+++.. |.|.. .+++.++.
T Consensus 118 ~~~~g--------~~~i~~~~~~~---~~~~~~~~~ll~~~G--~~~~~~~~~~d~~~al~g~~~~~~~---~~~~~la~ 181 (259)
T 2ahr_A 118 QILQS--------STALTGNALVS---QELQARVRDLTDSFG--STFDISEKDFDTFTALAGSSPAYIY---LFIEALAK 181 (259)
T ss_dssp GGTCE--------EEEEEECTTCC---HHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHHTTHHHHHH---HHHHHHHH
T ss_pred HHcCc--------eEEEEcCCCCC---HHHHHHHHHHHHhCC--CEEEecHHHccHHHHHhccHHHHHH---HHHHHHHH
Confidence 11111 12345554322 257888999999886 355566666777787753 33433 44556666
Q ss_pred HHHHcCCCHHHHHHHHcCC
Q psy11160 321 VCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 321 la~~~gid~~ev~~~l~~~ 339 (598)
.+.+.|+|.+++.+++...
T Consensus 182 ~~~~~Gl~~~~~~~~~~~~ 200 (259)
T 2ahr_A 182 AGVKNGIPKAKALEIVTQT 200 (259)
T ss_dssp HHHHTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 6889999999999988754
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-11 Score=121.71 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=81.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||..+|..|++ .|++|++||+++++++.+++...
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~---------------------------~g~~V~~~~~~~~~~~~~~~~g~--------- 44 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRR---------------------------RGHYLIGVSRQQSTCEKAVERQL--------- 44 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHTTS---------
T ss_pred CEEEEEcCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHhCCC---------
Confidence 589999999999999999999 88999999999999988764211
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
....++++.++ +++|+||+|||.+ .+.++++.+.+.++++++|+..|++.+...+.
T Consensus 45 --------~~~~~~~~~~~-~~~D~vi~av~~~---------------~~~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~ 100 (279)
T 2f1k_A 45 --------VDEAGQDLSLL-QTAKIIFLCTPIQ---------------LILPTLEKLIPHLSPTAIVTDVASVKTAIAEP 100 (279)
T ss_dssp --------CSEEESCGGGG-TTCSEEEECSCHH---------------HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHH
T ss_pred --------CccccCCHHHh-CCCCEEEEECCHH---------------HHHHHHHHHHhhCCCCCEEEECCCCcHHHHHH
Confidence 01346677777 8999999998643 46778888888899999999888887766544
Q ss_pred H
Q psy11160 166 I 166 (598)
Q Consensus 166 ~ 166 (598)
+
T Consensus 101 ~ 101 (279)
T 2f1k_A 101 A 101 (279)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=119.01 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=118.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+||| +|.||..+|..|++ .|++|+++|+++++.+.+.+.. .
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~---------------------------~g~~V~~~~r~~~~~~~~~~~~--------~ 45 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLAT---------------------------LGHEIVVGSRREEKAEAKAAEY--------R 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHT---------------------------TTCEEEEEESSHHHHHHHHHHH--------H
T ss_pred CeEEEEcCCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHHh--------c
Confidence 5899999 99999999999999 8999999999999988776420 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC-CchH--
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST-VPVR-- 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST-v~~~-- 161 (598)
..+. ...+. .+++.++++++|+||+|+|.+ .++++++.+.+.+ ++++++..|+ +.+.
T Consensus 46 ~~~~---~~~~~-~~~~~~~~~~~D~Vi~~~~~~---------------~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~ 105 (212)
T 1jay_A 46 RIAG---DASIT-GMKNEDAAEACDIAVLTIPWE---------------HAIDTARDLKNIL-REKIVVSPLVPVSRGAK 105 (212)
T ss_dssp HHHS---SCCEE-EEEHHHHHHHCSEEEECSCHH---------------HHHHHHHHTHHHH-TTSEEEECCCCEECCTT
T ss_pred cccc---cCCCC-hhhHHHHHhcCCEEEEeCChh---------------hHHHHHHHHHHHc-CCCEEEEcCCCcCcCCc
Confidence 0010 02244 356777899999999998632 3566777777777 4888888777 4421
Q ss_pred -------H--HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCC
Q psy11160 162 -------A--AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTN 232 (598)
Q Consensus 162 -------~--~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g 232 (598)
. ++++.. .+... .++.+
T Consensus 106 ~~~~~~g~~~~~~l~~-------------------------------~~~~~--~~v~~--------------------- 131 (212)
T 1jay_A 106 GFTYSSERSAAEIVAE-------------------------------VLESE--KVVSA--------------------- 131 (212)
T ss_dssp CCEECCSSCHHHHHHH-------------------------------HHTCS--CEEEC---------------------
T ss_pred eeecCCCCcHHHHHHH-------------------------------hCCCC--eEEEE---------------------
Confidence 1 222222 22111 11122
Q ss_pred ceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcc-cCCceEEecCchhHHHHHHHHHHHHHHH
Q psy11160 233 VQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHW-IPRKHILTTNTWSSELSKLAANAFLAQR 311 (598)
Q Consensus 233 ~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~-~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ 311 (598)
+.|.....+.... ....-.++++|++ +++.+.++++|+.+ +. ..+.+++.+.+..+|.+.|+|....
T Consensus 132 ------~~~~~~~~~~~~~-~~~~~~~~~~g~~----~~~~~~v~~l~~~~~G~-~~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 132 ------LHTIPAARFANLD-EKFDWDVPVCGDD----DESKKVVMSLISEIDGL-RPLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp ------CTTCCHHHHHCTT-CCCCEEEEEEESC----HHHHHHHHHHHHHSTTE-EEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred ------ccchHHHHhhCcC-CCCCccEEEECCc----HHHHHHHHHHHHHcCCC-CceeccchhHHHHhcchHHHHHHHH
Confidence 1132221111100 0000134566653 25788899999998 63 4567788999999999999888644
Q ss_pred H
Q psy11160 312 I 312 (598)
Q Consensus 312 i 312 (598)
.
T Consensus 200 ~ 200 (212)
T 1jay_A 200 R 200 (212)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-11 Score=120.00 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=84.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+|.||.++|..|+. ++.|++|++||+++++.+.+.+...
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~-------------------------~g~~~~V~~~d~~~~~~~~~~~~g~-------- 52 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKR-------------------------DHPHYKIVGYNRSDRSRDIALERGI-------- 52 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-------------------------HCTTSEEEEECSSHHHHHHHHHTTS--------
T ss_pred cceEEEEeeCHHHHHHHHHHHh-------------------------CCCCcEEEEEcCCHHHHHHHHHcCC--------
Confidence 4799999999999999999998 1126899999999999988764210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-ATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ivv~~STv~~~~~ 163 (598)
....++++.+++++||+||+|||.+ .+.++++.+.+. ++++++|++.|++.++.+
T Consensus 53 ---------~~~~~~~~~~~~~~aDvVilavp~~---------------~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~ 108 (290)
T 3b1f_A 53 ---------VDEATADFKVFAALADVIILAVPIK---------------KTIDFIKILADLDLKEDVIITDAGSTKYEIV 108 (290)
T ss_dssp ---------CSEEESCTTTTGGGCSEEEECSCHH---------------HHHHHHHHHHTSCCCTTCEEECCCSCHHHHH
T ss_pred ---------cccccCCHHHhhcCCCEEEEcCCHH---------------HHHHHHHHHHhcCCCCCCEEEECCCCchHHH
Confidence 0145667777889999999998754 357778888888 889999999898888776
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 109 ~~l~~ 113 (290)
T 3b1f_A 109 RAAEY 113 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-11 Score=124.76 Aligned_cols=102 Identities=23% Similarity=0.397 Sum_probs=77.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+|.||+.+|..|++ .|++|++||++ ++++.+++....+..++..
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~---------------------------~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~ 54 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLAL---------------------------AGEAINVLARG-ATLQALQTAGLRLTEDGAT 54 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHH---------------------------TTCCEEEECCH-HHHHHHHHTCEEEEETTEE
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEEECh-HHHHHHHHCCCEEecCCCe
Confidence 5799999999999999999999 89999999996 6778777533222222211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
...++.+++++++ +.++|+||+|||++ .++++++.|.+.++++++|+..+
T Consensus 55 ------~~~~~~~~~~~~~-~~~~D~Vilavk~~---------------~~~~~~~~l~~~l~~~~~iv~~~ 104 (335)
T 3ghy_A 55 ------HTLPVRATHDAAA-LGEQDVVIVAVKAP---------------ALESVAAGIAPLIGPGTCVVVAM 104 (335)
T ss_dssp ------EEECCEEESCHHH-HCCCSEEEECCCHH---------------HHHHHHGGGSSSCCTTCEEEECC
T ss_pred ------EEEeeeEECCHHH-cCCCCEEEEeCCch---------------hHHHHHHHHHhhCCCCCEEEEEC
Confidence 0123567788875 68999999998753 46788888888888888877543
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-11 Score=124.16 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=123.1
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+++|+||| +|.||.++|..|++ .|++|++||++++.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~---------------------------~G~~V~~~~~~~~~---------------- 57 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRA---------------------------SGYPISILDREDWA---------------- 57 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHT---------------------------TTCCEEEECTTCGG----------------
T ss_pred CCEEEEEcCCCHHHHHHHHHHHh---------------------------CCCeEEEEECCccc----------------
Confidence 45899999 99999999999999 89999999987531
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+..+++++||+||+|||.+ .+.++++++.+.++++++|++.+++.....
T Consensus 58 ----------------~~~~~~~~aDvVilavp~~---------------~~~~vl~~l~~~l~~~~iv~~~~svk~~~~ 106 (298)
T 2pv7_A 58 ----------------VAESILANADVVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPL 106 (298)
T ss_dssp ----------------GHHHHHTTCSEEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHH
T ss_pred ----------------CHHHHhcCCCEEEEeCCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCcHHH
Confidence 3456789999999999754 367788889888999999999998877665
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.+.. .+ +..+ +...|.+
T Consensus 107 ~~~~~-------------------------------~~------------------------------~~~~-v~~hP~~ 124 (298)
T 2pv7_A 107 AKMLE-------------------------------VH------------------------------TGAV-LGLHPMF 124 (298)
T ss_dssp HHHHH-------------------------------HC------------------------------SSEE-EEEEECS
T ss_pred HHHHH-------------------------------hc------------------------------CCCE-EeeCCCC
Confidence 44332 00 0000 1112333
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT-TNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~-~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
..+...+. ....++..+.+. ++.+.++++|+.++ ..+.. ......+.++++.+.-..+.+++++.+.
T Consensus 125 g~~~~~~~---g~~~~l~~~~~~----~~~~~v~~l~~~~G--~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~--- 192 (298)
T 2pv7_A 125 GADIASMA---KQVVVRCDGRFP----ERYEWLLEQIQIWG--AKIYQTNATEHDHNMTYIQALRHFSTFANGLHLS--- 192 (298)
T ss_dssp CTTCSCCT---TCEEEEEEEECG----GGTHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT---
T ss_pred CCCchhhc---CCeEEEecCCCH----HHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 22211111 112333333222 46778899999886 34444 4445688999998877766677766554
Q ss_pred HHcCCCHHHHHHHH
Q psy11160 323 EATGADVSEVAKAV 336 (598)
Q Consensus 323 ~~~gid~~ev~~~l 336 (598)
..|++..++.+++
T Consensus 193 -~~g~~~~~~~~la 205 (298)
T 2pv7_A 193 -KQPINLANLLALS 205 (298)
T ss_dssp -TSSCCHHHHHHTC
T ss_pred -hcCCCHHHHHhhc
Confidence 3788887766655
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.3e-11 Score=118.58 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=122.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
+|||+|||+|.||.++|..|++ .| ++|++||+++++ .
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~---------------------------~g~~~~~~v~~~~~~~~~-----~------- 44 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIAN---------------------------ANIIKKENLFYYGPSKKN-----T------- 44 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHH---------------------------HTSSCGGGEEEECSSCCS-----S-------
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCCCCCeEEEEeCCccc-----C-------
Confidence 4799999999999999999998 67 799999998765 1
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
++..++++.+++++||+||+|||.. .++++++++.+.+++..+|.+.+++.+
T Consensus 45 -------------g~~~~~~~~~~~~~~D~vi~~v~~~---------------~~~~v~~~l~~~l~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 45 -------------TLNYMSSNEELARHCDIIVCAVKPD---------------IAGSVLNNIKPYLSSKLLISICGGLNI 96 (262)
T ss_dssp -------------SSEECSCHHHHHHHCSEEEECSCTT---------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred -------------ceEEeCCHHHHHhcCCEEEEEeCHH---------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence 1345677888899999999999732 367778888888855557777888887
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCC-ceEEEeccccchhhhhHHHHHhhcccCCceeeEE-
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDN-KIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL- 238 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~-~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~- 238 (598)
...+++. ..+ .+ +.+.
T Consensus 97 ~~l~~~~----------------------------------~~~~~~----------------------------v~~~p 114 (262)
T 2rcy_A 97 GKLEEMV----------------------------------GSENKI----------------------------VWVMP 114 (262)
T ss_dssp HHHHHHH----------------------------------CTTSEE----------------------------EEEEC
T ss_pred HHHHHHh----------------------------------CCCCcE----------------------------EEECC
Confidence 5432211 111 00 0011
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHH--HHHHHHHHHHHH
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA--NAFLAQRISSIN 316 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~--N~~~~~~ia~~n 316 (598)
..|.....| + .++.++... .+++++.++++|+.++ ..+.++.......+++.. |.+. ..++.
T Consensus 115 ~~p~~~~~g--------~-~~~~~~~~~--~~~~~~~~~~ll~~~G--~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 178 (262)
T 2rcy_A 115 NTPCLVGEG--------S-FIYCSNKNV--NSTDKKYVNDIFNSCG--IIHEIKEKDMDIATAISGCGPAYV---YLFIE 178 (262)
T ss_dssp CGGGGGTCE--------E-EEEEECTTC--CHHHHHHHHHHHHTSE--EEEECCGGGHHHHHHHTTSHHHHH---HHHHH
T ss_pred ChHHHHcCC--------e-EEEEeCCCC--CHHHHHHHHHHHHhCC--CEEEeCHHHccHHHHHHccHHHHH---HHHHH
Confidence 112111111 1 234444321 2367888999999887 355555444555666643 4444 33444
Q ss_pred HHHHHHHHcCCCHHHHHHHHcC
Q psy11160 317 SLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~ 338 (598)
.+...+.+.|++.+++.+++..
T Consensus 179 al~~~~~~~Gl~~~~~~~~~~~ 200 (262)
T 2rcy_A 179 SLIDAGVKNGLSRELSKNLVLQ 200 (262)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4455578899999888887754
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6e-11 Score=119.25 Aligned_cols=91 Identities=13% Similarity=0.300 Sum_probs=72.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|.||..+|..|++ .| ++|++||+++++.+.+.+.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~---------------------------~g~~~v~~~~r~~~~~~~~~~~---------- 43 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVK---------------------------QGGYRIYIANRGAEKRERLEKE---------- 43 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HCSCEEEEECSSHHHHHHHHHH----------
T ss_pred CEEEEECchHHHHHHHHHHHH---------------------------CCCCeEEEECCCHHHHHHHHHh----------
Confidence 589999999999999999999 78 9999999999999987642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe-cCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK-STVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~-STv~~ 160 (598)
.++..++++.+++ ++|+||+||| |. .++++++.+.+ + +++|+.. |++++
T Consensus 44 --------~g~~~~~~~~~~~-~~D~vi~~v~-~~--------------~~~~v~~~l~~--~-~~ivv~~~~g~~~ 93 (263)
T 1yqg_A 44 --------LGVETSATLPELH-SDDVLILAVK-PQ--------------DMEAACKNIRT--N-GALVLSVAAGLSV 93 (263)
T ss_dssp --------TCCEEESSCCCCC-TTSEEEECSC-HH--------------HHHHHHTTCCC--T-TCEEEECCTTCCH
T ss_pred --------cCCEEeCCHHHHh-cCCEEEEEeC-ch--------------hHHHHHHHhcc--C-CCEEEEecCCCCH
Confidence 0245566776778 9999999987 42 35666655544 4 7888877 77876
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=115.81 Aligned_cols=96 Identities=14% Similarity=0.279 Sum_probs=78.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc---eEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI---QVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+|||+|||+|.||.++|..|++ .|+ +|++||+++++.+.+.+.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~---------------------------~g~~~~~V~v~dr~~~~~~~l~~~------- 48 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIA---------------------------NGYDPNRICVTNRSLDKLDFFKEK------- 48 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHH---------------------------TTCCGGGEEEECSSSHHHHHHHHT-------
T ss_pred CCEEEEEcccHHHHHHHHHHHH---------------------------CCCCCCeEEEEeCCHHHHHHHHHH-------
Confidence 4799999999999999999999 777 999999999999988753
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEE-ecCCc
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-ATDNKIVVE-KSTVP 159 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ivv~-~STv~ 159 (598)
-++..+++..+++++||+||+|||.. .+.+++++|.+. ++++++|+. .+.++
T Consensus 49 -----------~gi~~~~~~~~~~~~aDvVilav~p~---------------~~~~vl~~l~~~~l~~~~iiiS~~agi~ 102 (280)
T 3tri_A 49 -----------CGVHTTQDNRQGALNADVVVLAVKPH---------------QIKMVCEELKDILSETKILVISLAVGVT 102 (280)
T ss_dssp -----------TCCEEESCHHHHHSSCSEEEECSCGG---------------GHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred -----------cCCEEeCChHHHHhcCCeEEEEeCHH---------------HHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence 13567788888999999999999531 367888899988 888877663 34444
Q ss_pred h
Q psy11160 160 V 160 (598)
Q Consensus 160 ~ 160 (598)
.
T Consensus 103 ~ 103 (280)
T 3tri_A 103 T 103 (280)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.1e-10 Score=115.26 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=77.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+|||+|||+|.||+.+|..|++ .|++|++| +++++++.+++....+..++.
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~---------------------------~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~ 69 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLAR---------------------------AGHEVILI-ARPQHVQAIEATGLRLETQSF 69 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHH---------------------------TTCEEEEE-CCHHHHHHHHHHCEEEECSSC
T ss_pred cCCcEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEE-EcHhHHHHHHhCCeEEEcCCC
Confidence 35899999999999999999999 89999999 999999998853222222222
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
. ...++.++++++ .+.++|+||+|||+. .++++++.|.+.++++++||..
T Consensus 70 ~------~~~~~~~~~~~~-~~~~~D~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~ 119 (318)
T 3hwr_A 70 D------EQVKVSASSDPS-AVQGADLVLFCVKST---------------DTQSAALAMKPALAKSALVLSL 119 (318)
T ss_dssp E------EEECCEEESCGG-GGTTCSEEEECCCGG---------------GHHHHHHHHTTTSCTTCEEEEE
T ss_pred c------EEEeeeeeCCHH-HcCCCCEEEEEcccc---------------cHHHHHHHHHHhcCCCCEEEEe
Confidence 1 112456778875 478999999998764 3678889999999988877643
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-10 Score=119.79 Aligned_cols=101 Identities=16% Similarity=0.271 Sum_probs=81.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++||+|||+|.||.++|..|++ .|++|++||+++++.+.+.+-
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~---------------------------~G~~V~~~dr~~~~~~~a~~~---------- 50 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHA---------------------------ANHSVFGYNRSRSGAKSAVDE---------- 50 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSCHHHHHHHHHT----------
T ss_pred CCEEEEEeecHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHc----------
Confidence 5799999999999999999999 899999999999998876642
Q ss_pred HHHhhhcCCceEEecCHHHHhcc----CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQK----AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~----adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
++..+.++.+++++ ||+||+|||.. .+.++++.+.+. +++++|++.|++..
T Consensus 51 ---------G~~~~~~~~e~~~~a~~~aDlVilavP~~---------------~~~~vl~~l~~~-~~~~iv~Dv~Svk~ 105 (341)
T 3ktd_A 51 ---------GFDVSADLEATLQRAAAEDALIVLAVPMT---------------AIDSLLDAVHTH-APNNGFTDVVSVKT 105 (341)
T ss_dssp ---------TCCEESCHHHHHHHHHHTTCEEEECSCHH---------------HHHHHHHHHHHH-CTTCCEEECCSCSH
T ss_pred ---------CCeeeCCHHHHHHhcccCCCEEEEeCCHH---------------HHHHHHHHHHcc-CCCCEEEEcCCCCh
Confidence 12345677766654 79999998732 467788888886 88999999999988
Q ss_pred HHHHHHH
Q psy11160 161 RAAESIM 167 (598)
Q Consensus 161 ~~~~~~~ 167 (598)
...+.+.
T Consensus 106 ~i~~~~~ 112 (341)
T 3ktd_A 106 AVYDAVK 112 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=113.05 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=61.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.|+|+|||+|.||.++|..|++ .|++|++||++++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~---------------------------~g~~V~~~~~~~~------------------ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEI---------------------------AGHEVTYYGSKDQ------------------ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECTTCC------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHH------------------
Confidence 5799999999999999999999 8999999998643
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
++++||+||+|||.+ .++++++.+.+.++ +++|+..|+
T Consensus 54 -------------------~~~~aD~vi~av~~~---------------~~~~v~~~l~~~~~-~~~vi~~~~ 91 (209)
T 2raf_A 54 -------------------ATTLGEIVIMAVPYP---------------ALAALAKQYATQLK-GKIVVDITN 91 (209)
T ss_dssp -------------------CSSCCSEEEECSCHH---------------HHHHHHHHTHHHHT-TSEEEECCC
T ss_pred -------------------HhccCCEEEEcCCcH---------------HHHHHHHHHHHhcC-CCEEEEECC
Confidence 356899999999732 46778888888888 889888777
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-09 Score=109.90 Aligned_cols=209 Identities=13% Similarity=0.073 Sum_probs=136.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC----------
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN---------- 74 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~---------- 74 (598)
..||+|||+|.||..+|..++. +|++|+++|++++.++...+.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~---------------------------~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~ 58 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFAS---------------------------GGFRVKLYDIEPRQITGALENIRKEMKSLQQ 58 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999 899999999999876643211
Q ss_pred CCCCCC-CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-
Q psy11160 75 KLPIYE-PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV- 152 (598)
Q Consensus 75 ~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv- 152 (598)
...+.. ...++.+ .+++.++|+.+++++||+|+-+||.. ++.=++++++|.+.+++++|+
T Consensus 59 ~g~~~~~~~~~~~l-----~~i~~~~~l~~a~~~ad~ViEav~E~-------------l~iK~~lf~~l~~~~~~~aIla 120 (319)
T 3ado_A 59 SGSLKGSLSAEEQL-----SLISSCTNLAEAVEGVVHIQECVPEN-------------LDLKRKIFAQLDSIVDDRVVLS 120 (319)
T ss_dssp TTCCCSSSCHHHHH-----HTEEEECCHHHHTTTEEEEEECCCSC-------------HHHHHHHHHHHHTTCCSSSEEE
T ss_pred cCCCCCccCHHHHH-----hhcccccchHhHhccCcEEeeccccH-------------HHHHHHHHHHHHHHhhhcceee
Confidence 001111 1122222 35889999999999999999999753 334467889999999999988
Q ss_pred EEecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCC
Q psy11160 153 VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTN 232 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g 232 (598)
-++|++++... +. .++ + .+.. .|
T Consensus 121 SNTSsl~is~i---a~-------------------------------~~~----------------~------p~r~-ig 143 (319)
T 3ado_A 121 SSSSCLLPSKL---FT-------------------------------GLA----------------H------VKQC-IV 143 (319)
T ss_dssp ECCSSCCHHHH---HT-------------------------------TCT----------------T------GGGE-EE
T ss_pred hhhhhccchhh---hh-------------------------------hcc----------------C------CCcE-EE
Confidence 45566666332 11 000 0 0000 01
Q ss_pred ceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe-c-CchhHHHHHHHHHHHHHH
Q psy11160 233 VQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT-T-NTWSSELSKLAANAFLAQ 310 (598)
Q Consensus 233 ~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~-~-~~~~Ae~~Kl~~N~~~~~ 310 (598)
.| -++|....+ +. =|+.|... .+++++.+..+++.++. .++.+ . .++- +.| .+
T Consensus 144 --~H-ffNP~~~m~------LV---Eiv~g~~T---s~~~~~~~~~~~~~~gk-~pv~v~kd~pGF------i~N---Rl 198 (319)
T 3ado_A 144 --AH-PVNPPYYIP------LV---ELVPHPET---SPATVDRTHALMRKIGQ-SPVRVLKEIDGF------VLN---RL 198 (319)
T ss_dssp --EE-ECSSTTTCC------EE---EEEECTTC---CHHHHHHHHHHHHHTTC-EEEECSSCCTTT------THH---HH
T ss_pred --ec-CCCCccccc------hH---HhcCCCCC---cHHHHHHHHHHHHHhCC-ccCCcCCCCCCE------eHH---HH
Confidence 11 135544332 11 25555443 34788999999999874 45544 2 2332 223 34
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 311 RISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 311 ~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
..++.+|+..+.+...++++++=+++....
T Consensus 199 ~~~~~~EA~~lv~eGvas~edID~~~~~g~ 228 (319)
T 3ado_A 199 QYAIISEAWRLVEEGIVSPSDLDLVMSDGL 228 (319)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 457889999999999999999988886543
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=114.51 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++|||+|||+|.||..+|..|++ .|++|++ +|+++++++.+.+..
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~---------------------------~g~~V~~v~~r~~~~~~~l~~~~------- 67 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTA---------------------------AQIPAIIANSRGPASLSSVTDRF------- 67 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHH---------------------------TTCCEEEECTTCGGGGHHHHHHH-------
T ss_pred cCCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEECCCHHHHHHHHHHh-------
Confidence 46799999999999999999999 8999999 999999988876420
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+...+.+..++++++|+||+|||.. .+.++++.+.+ + ++++|+..|..
T Consensus 68 -----------g~~~~~~~~~~~~~aDvVilavp~~---------------~~~~v~~~l~~-~-~~~ivi~~~~g 115 (220)
T 4huj_A 68 -----------GASVKAVELKDALQADVVILAVPYD---------------SIADIVTQVSD-W-GGQIVVDASNA 115 (220)
T ss_dssp -----------TTTEEECCHHHHTTSSEEEEESCGG---------------GHHHHHTTCSC-C-TTCEEEECCCC
T ss_pred -----------CCCcccChHHHHhcCCEEEEeCChH---------------HHHHHHHHhhc-c-CCCEEEEcCCC
Confidence 0112233345689999999998632 35666776665 4 57777765543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-09 Score=111.72 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=69.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC---CC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY---EP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~---e~ 81 (598)
.|||+|||+|.||+.+|..|++ .|++|++|++++ .+.+++....+. .+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~---------------------------~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g 52 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAK---------------------------TGHCVSVVSRSD--YETVKAKGIRIRSATLG 52 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHH---------------------------TTCEEEEECSTT--HHHHHHHCEEEEETTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEeCCh--HHHHHhCCcEEeecCCC
Confidence 3799999999999999999999 899999999987 266664211111 11
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
+.. . ..+.++++++++.+.+|+||+|||... ++++++.+.+.++++++||.
T Consensus 53 ~~~------~-~~~~~~~~~~~~~~~~DlVilavK~~~---------------~~~~l~~l~~~l~~~t~Iv~ 103 (320)
T 3i83_A 53 DYT------F-RPAAVVRSAAELETKPDCTLLCIKVVE---------------GADRVGLLRDAVAPDTGIVL 103 (320)
T ss_dssp CEE------E-CCSCEESCGGGCSSCCSEEEECCCCCT---------------TCCHHHHHTTSCCTTCEEEE
T ss_pred cEE------E-eeeeeECCHHHcCCCCCEEEEecCCCC---------------hHHHHHHHHhhcCCCCEEEE
Confidence 100 0 023456777765568999999997653 34567788888888887664
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=114.01 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=92.4
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~ 79 (598)
|.++.|||+|||+|+||.++|..|+. .|+ +|++||+++++++.....
T Consensus 5 ~~~~~~kI~VIGaG~vG~~lA~~la~---------------------------~g~~~V~L~D~~~~~~~~~~~~----- 52 (331)
T 1pzg_A 5 LVQRRKKVAMIGSGMIGGTMGYLCAL---------------------------RELADVVLYDVVKGMPEGKALD----- 52 (331)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHH---------------------------HTCCEEEEECSSSSHHHHHHHH-----
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEECChhHHHHHHHH-----
Confidence 44556899999999999999999999 687 999999999888763211
Q ss_pred CCChHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcc-----hHHHHHHHHHHHHHcCCCcEE
Q psy11160 80 EPGLDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAAD-----LKYVEAAARMIAEIATDNKIV 152 (598)
Q Consensus 80 e~~~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~-----~~~~~~~~~~i~~~~~~~~iv 152 (598)
+.+.... ....++++|+|+++++++||+||+++++|.+.+....+ ...| ...++++++.|.++. ++.++
T Consensus 53 ---l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~v 128 (331)
T 1pzg_A 53 ---LSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFI 128 (331)
T ss_dssp ---HHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred ---HHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEE
Confidence 1111111 12356888999988999999999999888754320000 1223 455788888888887 55555
Q ss_pred EEecCCchHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMN 168 (598)
Q Consensus 153 v~~STv~~~~~~~~~~ 168 (598)
++ .|.|.++.-.++.
T Consensus 129 i~-~tNP~~~~t~~~~ 143 (331)
T 1pzg_A 129 IV-VTNPLDCMVKVMC 143 (331)
T ss_dssp EE-CCSSHHHHHHHHH
T ss_pred EE-EcCchHHHHHHHH
Confidence 54 6889988755553
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-10 Score=115.16 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=60.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+|||+|||+|.||.++|..|+. . ++| .+||+++++.+.+.+..
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~---------------------------~-~~v~~v~~~~~~~~~~~~~~~-------- 45 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKD---------------------------R-YEIGYILSRSIDRARNLAEVY-------- 45 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC--------------------------------CCCEECSSHHHHHHHHHHT--------
T ss_pred CceEEEEeCCHHHHHHHHHHHH---------------------------c-CcEEEEEeCCHHHHHHHHHHc--------
Confidence 3689999999999999999988 7 899 59999999998876310
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
+. .+++++++++++|+||+|||... +.++++.+. .++++|+..|+..+
T Consensus 46 ----------g~-~~~~~~~~~~~~DvVilav~~~~---------------~~~v~~~l~---~~~~ivi~~s~~~~ 93 (276)
T 2i76_A 46 ----------GG-KAATLEKHPELNGVVFVIVPDRY---------------IKTVANHLN---LGDAVLVHCSGFLS 93 (276)
T ss_dssp ----------CC-CCCSSCCCCC---CEEECSCTTT---------------HHHHHTTTC---CSSCCEEECCSSSC
T ss_pred ----------CC-ccCCHHHHHhcCCEEEEeCChHH---------------HHHHHHHhc---cCCCEEEECCCCCc
Confidence 11 34556666788999999987642 344554443 57888887776544
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=105.69 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=69.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|+|+|||+|.||..+|..|++ .|++|+++|+++++.+.+.+.
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~---------------------------~g~~V~~~~r~~~~~~~~~~~---------- 70 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVG---------------------------SGFKVVVGSRNPKRTARLFPS---------- 70 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESSHHHHHHHSBT----------
T ss_pred CCEEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHc----------
Confidence 4789999999999999999999 889999999999998877542
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
++..+ ++.++++++|+||+|+|... +.++++ +.+.+ ++++|+..|+..+-
T Consensus 71 ---------g~~~~-~~~~~~~~~DvVi~av~~~~---------------~~~v~~-l~~~~-~~~~vv~~s~g~~~ 120 (215)
T 2vns_A 71 ---------AAQVT-FQEEAVSSPEVIFVAVFREH---------------YSSLCS-LSDQL-AGKILVDVSNPTEQ 120 (215)
T ss_dssp ---------TSEEE-EHHHHTTSCSEEEECSCGGG---------------SGGGGG-GHHHH-TTCEEEECCCCCHH
T ss_pred ---------CCcee-cHHHHHhCCCEEEECCChHH---------------HHHHHH-HHHhc-CCCEEEEeCCCccc
Confidence 12333 67778899999999987421 111222 44455 78888888877653
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-09 Score=110.74 Aligned_cols=124 Identities=20% Similarity=0.178 Sum_probs=87.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|+||.++|..|+. ++.|++|++||+++++++.+..... .....
T Consensus 1 mkI~VIGaG~vG~~la~~la~-------------------------~~~g~~V~l~D~~~~~~~~~~~~l~----~~~~~ 51 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAE-------------------------KQLARELVLLDVVEGIPQGKALDMY----ESGPV 51 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-------------------------TTCCSEEEEECSSSSHHHHHHHHHH----TTHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh-------------------------CCCCCEEEEEeCChhHHHHHHHhHH----hhhhc
Confidence 599999999999999999998 2137999999999988886542100 00000
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcch-----HHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADL-----KYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.....++++++|+++ +++||+||+++|+|..+++ ...|+ +.++++.+.|.++.++..+++. |.|+
T Consensus 52 ---~~~~~~i~~t~d~~~-l~~aDvViiav~~p~~~g~----~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~ 121 (310)
T 1guz_A 52 ---GLFDTKVTGSNDYAD-TANSDIVIITAGLPRKPGM----TREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV--SNPL 121 (310)
T ss_dssp ---HTCCCEEEEESCGGG-GTTCSEEEECCSCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEC--CSSH
T ss_pred ---ccCCcEEEECCCHHH-HCCCCEEEEeCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE--cCch
Confidence 001245788889875 9999999999999876532 13444 6778888888888644444443 8899
Q ss_pred HHHHHHHH
Q psy11160 161 RAAESIMN 168 (598)
Q Consensus 161 ~~~~~~~~ 168 (598)
++...++.
T Consensus 122 ~~~~~~~~ 129 (310)
T 1guz_A 122 DIMTHVAW 129 (310)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98755543
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-08 Score=99.36 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=69.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC-C-h
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP-G-L 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~-~-~ 83 (598)
|||+|||+|.||+.+|..|++ .|++|++|++++ .+.+++....+..+ + .
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~---------------------------~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~ 53 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQR---------------------------SGEDVHFLLRRD--YEAIAGNGLKVFSINGDF 53 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHH---------------------------TSCCEEEECSTT--HHHHHHTCEEEEETTCCE
T ss_pred CEEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEEcCc--HHHHHhCCCEEEcCCCeE
Confidence 799999999999999999999 899999999986 36666432211100 0 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
. . ..+.++++++ .+..+|+||+|||.. .++++++.|.+.+.++++||.
T Consensus 54 ~------~-~~~~~~~~~~-~~~~~D~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~ 101 (312)
T 3hn2_A 54 T------L-PHVKGYRAPE-EIGPMDLVLVGLKTF---------------ANSRYEELIRPLVEEGTQILT 101 (312)
T ss_dssp E------E-SCCCEESCHH-HHCCCSEEEECCCGG---------------GGGGHHHHHGGGCCTTCEEEE
T ss_pred E------E-eeceeecCHH-HcCCCCEEEEecCCC---------------CcHHHHHHHHhhcCCCCEEEE
Confidence 0 0 1234567775 478999999998654 245678889999998887764
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-09 Score=109.82 Aligned_cols=128 Identities=14% Similarity=0.180 Sum_probs=89.4
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+.++||+|||+|+||.++|..|+. .|+ +|+++|+++++++.....
T Consensus 2 ~~~~kI~VIGaG~vG~~ia~~la~---------------------------~g~~~v~L~Di~~~~l~~~~~~------- 47 (322)
T 1t2d_A 2 APKAKIVLVGSGMIGGVMATLIVQ---------------------------KNLGDVVLFDIVKNMPHGKALD------- 47 (322)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECSSSSHHHHHHHH-------
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEeCCHHHHHHHHHH-------
Confidence 456799999999999999999999 677 899999999888753321
Q ss_pred ChHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCC-CCCCcc-----hHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 82 GLDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNG-KGRAAD-----LKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~-~~~~~~-----~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
+.+.... ....++++++|+ +++++||+||+++++|.+.+.++ +....| ...++++++.|.++. ++.++++
T Consensus 48 -l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv 124 (322)
T 1t2d_A 48 -TSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIV 124 (322)
T ss_dssp -HHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred -HHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 1111111 123468888998 68999999999998887653210 000223 356778888888887 6666555
Q ss_pred ecCCchHHHHHHHH
Q psy11160 155 KSTVPVRAAESIMN 168 (598)
Q Consensus 155 ~STv~~~~~~~~~~ 168 (598)
-|.|.+..-.++.
T Consensus 125 -~tNP~~~~t~~~~ 137 (322)
T 1t2d_A 125 -VTNPVDVMVQLLH 137 (322)
T ss_dssp -CSSSHHHHHHHHH
T ss_pred -ecCChHHHHHHHH
Confidence 3778887655443
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.2e-09 Score=107.86 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=72.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||.++|..|+. .|++|+++|+++++ .+...+.
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~---------------------------~G~~V~~~~~~~~~~~~~a~~~--------- 59 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKD---------------------------SGVDVTVGLRSGSATVAKAEAH--------- 59 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECCTTCHHHHHHHHT---------
T ss_pred CCEEEEECchHHHHHHHHHHHH---------------------------CcCEEEEEECChHHHHHHHHHC---------
Confidence 4689999999999999999999 78999999998765 4433321
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR-MIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~ivv~~STv 158 (598)
++..+ ++.+++++||+||+|||.. ...++++ ++.+.++++++|++.+++
T Consensus 60 ----------G~~~~-~~~e~~~~aDvVilavp~~---------------~~~~v~~~~i~~~l~~~~ivi~~~gv 109 (338)
T 1np3_A 60 ----------GLKVA-DVKTAVAAADVVMILTPDE---------------FQGRLYKEEIEPNLKKGATLAFAHGF 109 (338)
T ss_dssp ----------TCEEE-CHHHHHHTCSEEEECSCHH---------------HHHHHHHHHTGGGCCTTCEEEESCCH
T ss_pred ----------CCEEc-cHHHHHhcCCEEEEeCCcH---------------HHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 23444 7778899999999998653 3466776 888889999999876543
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=115.55 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=86.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--------ceEEEEeCCHH-----HHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--------IQVTVVDKSEE-----RIRQW 71 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~v~~~d~~~~-----~~~~~ 71 (598)
..||+|||+|.||+++|..|++ +| ++|++|.++++ .++.+
T Consensus 34 p~KI~ViGaGsWGTALA~~la~---------------------------ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~i 86 (391)
T 4fgw_A 34 PFKVTVIGSGNWGTTIAKVVAE---------------------------NCKGYPEVFAPIVQMWVFEEEINGEKLTEII 86 (391)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH---------------------------HHHHCTTTEEEEEEEECCCCBSSSCBHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHH---------------------------cCCCccccCCceEEEEEcchHhhhHHHHHHH
Confidence 3599999999999999999998 44 46999998865 36677
Q ss_pred Hc-CCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCc
Q psy11160 72 NS-NKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNK 150 (598)
Q Consensus 72 ~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 150 (598)
|+ +.++.|.|++. .+.++++++|+.+++++||+||++||+. .++++++++.++++++.
T Consensus 87 n~~~~N~~YLpgv~------Lp~~i~~t~dl~~al~~ad~ii~avPs~---------------~~r~~l~~l~~~~~~~~ 145 (391)
T 4fgw_A 87 NTRHQNVKYLPGIT------LPDNLVANPDLIDSVKDVDIIVFNIPHQ---------------FLPRICSQLKGHVDSHV 145 (391)
T ss_dssp TTTCCBTTTBTTCC------CCSSEEEESCHHHHHTTCSEEEECSCGG---------------GHHHHHHHHTTTSCTTC
T ss_pred HhcCcCcccCCCCc------CCCCcEEeCCHHHHHhcCCEEEEECChh---------------hhHHHHHHhccccCCCc
Confidence 75 45677777652 3568999999999999999999999875 48899999999999998
Q ss_pred EEEEecC
Q psy11160 151 IVVEKST 157 (598)
Q Consensus 151 ivv~~ST 157 (598)
++|..+-
T Consensus 146 ~iv~~~K 152 (391)
T 4fgw_A 146 RAISCLK 152 (391)
T ss_dssp EEEECCC
T ss_pred eeEEecc
Confidence 8886553
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-09 Score=109.18 Aligned_cols=125 Identities=17% Similarity=0.281 Sum_probs=78.5
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHH----HHcC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQ----WNSN 74 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~----~~~~ 74 (598)
|.++.+||+|||+|+||.++|..|+. .|+ +|+++|+++++++. +..+
T Consensus 3 m~~~~~KI~IiGaG~vG~~~a~~l~~---------------------------~~~~~ev~L~Di~~~~~~g~~~dl~~~ 55 (318)
T 1y6j_A 3 MVKSRSKVAIIGAGFVGASAAFTMAL---------------------------RQTANELVLIDVFKEKAIGEAMDINHG 55 (318)
T ss_dssp ----CCCEEEECCSHHHHHHHHHHHH---------------------------TTCSSEEEEECCC---CCHHHHHHTTS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCCEEEEEeCChHHHHHHHHHHHHh
Confidence 43446899999999999999999999 555 99999999877543 2222
Q ss_pred CCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 75 KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 75 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
. ++. ...+++.+..+++++||+||+++++|.++..++.+ ...+.+.++++.+.|.++. ++.+|+
T Consensus 56 ~-~~~-------------~~~~i~~~~~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi 120 (318)
T 1y6j_A 56 L-PFM-------------GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVIL 120 (318)
T ss_dssp C-CCT-------------TCEEEC--CGGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEE
T ss_pred H-Hhc-------------CCeEEEECCHHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEE
Confidence 1 111 12233323345899999999999998764321100 1334556788888888884 666666
Q ss_pred EecCCchHHHHHHHH
Q psy11160 154 EKSTVPVRAAESIMN 168 (598)
Q Consensus 154 ~~STv~~~~~~~~~~ 168 (598)
+ .|.|+++.-.++.
T Consensus 121 v-~tNPv~~~~~~~~ 134 (318)
T 1y6j_A 121 V-VSNPVDIITYMIQ 134 (318)
T ss_dssp E-CSSSHHHHHHHHH
T ss_pred E-ecCcHHHHHHHHH
Confidence 6 6999999876654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=105.86 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=86.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+||+|||+|+||.++|..|+. .|+ +|++||+++++++..... +.
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~---------------------------~g~~~V~L~Di~~~~l~~~~~~--------l~ 59 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQ---------------------------KDLGDVYMFDIIEGVPQGKALD--------LN 59 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECSSTTHHHHHHHH--------HH
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEECCHHHHHHHHHH--------HH
Confidence 699999999999999999999 788 999999999888753211 11
Q ss_pred HHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+..... ...++++++|+ +++++||+||+++++|.+++.++.+ ...+.+.++++++.|.++. ++.++++- |-|.+.
T Consensus 60 ~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNP~~~ 136 (328)
T 2hjr_A 60 HCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI-TNPLDA 136 (328)
T ss_dssp HHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHH
T ss_pred hHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe-cCchHH
Confidence 111111 13568888998 6899999999999988765432111 0113356778888888887 56665553 557666
Q ss_pred HHHHH
Q psy11160 163 AESIM 167 (598)
Q Consensus 163 ~~~~~ 167 (598)
.-.++
T Consensus 137 ~t~~~ 141 (328)
T 2hjr_A 137 MVYYF 141 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-08 Score=105.57 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=82.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|+||.++|..|+. .|+ +|+++|+++++++..... +.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~---------------------------~g~~~v~L~Di~~~~~~g~~~d--------l~ 47 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAA---------------------------KELGDIVLLDIVEGVPQGKALD--------LY 47 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEECSSSSHHHHHHHH--------HH
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCCeEEEEeCCccHHHHHHHh--------HH
Confidence 699999999999999999999 676 899999999887643211 11
Q ss_pred HHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+.... ....++++++|+ +++++||+||+++++|.++..++.+ ...+...++++.+.|.++. ++.+++. .|.|.++
T Consensus 48 ~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNPv~~ 124 (309)
T 1ur5_A 48 EASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIM-VNNPLDA 124 (309)
T ss_dssp TTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEE-CCSSHHH
T ss_pred HhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-cCCchHH
Confidence 11100 113467888898 6899999999999998765431110 0112345566667776665 6666665 6889998
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
.-.++.
T Consensus 125 ~t~~~~ 130 (309)
T 1ur5_A 125 MTYLAA 130 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765554
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-08 Score=103.23 Aligned_cols=123 Identities=15% Similarity=0.263 Sum_probs=84.5
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
|.+.+||+|||+|.||.++|..|+. .|+ +|++||+++++++.....
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~---------------------------~g~~~V~l~D~~~~~~~~~~~~------ 47 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGK---------------------------DNLADVVLFDIAEGIPQGKALD------ 47 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHH---------------------------HTCCEEEEECSSSSHHHHHHHH------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh---------------------------CCCceEEEEeCCchHHHHHHHH------
Confidence 3445799999999999999999999 787 999999999887753210
Q ss_pred CChHHHHh-hhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCC-CcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 81 PGLDEVVK-KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGR-AADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+..... .....+++.++|+ +++++||+||++++.|.++..++.+. ..+...++++++.|.++.+ +.+++.-|.
T Consensus 48 --l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sN- 122 (317)
T 2ewd_A 48 --ITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITN- 122 (317)
T ss_dssp --HHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCS-
T ss_pred --HHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCC-
Confidence 000000 0112467888888 68999999999999987654321111 1234567788888888864 676655443
Q ss_pred chHH
Q psy11160 159 PVRA 162 (598)
Q Consensus 159 ~~~~ 162 (598)
|.+.
T Consensus 123 p~~~ 126 (317)
T 2ewd_A 123 PLDV 126 (317)
T ss_dssp SHHH
T ss_pred hHHH
Confidence 4444
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7e-09 Score=108.22 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=83.5
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHH----HHcC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQ----WNSN 74 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~----~~~~ 74 (598)
|++..+||+|||+|+||.++|..|+. .|+ +|+++|+++++++. ++.+
T Consensus 1 m~~~~~kI~ViGaG~vG~~~a~~l~~---------------------------~~~~~~l~l~D~~~~k~~g~a~DL~~~ 53 (326)
T 3pqe_A 1 MNKHVNKVALIGAGFVGSSYAFALIN---------------------------QGITDELVVIDVNKEKAMGDVMDLNHG 53 (326)
T ss_dssp -CCSCCEEEEECCSHHHHHHHHHHHH---------------------------HTCCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCceEEEEecchHHHHHHHHHHHhc
Confidence 66778999999999999999999998 455 99999999998876 6654
Q ss_pred CCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 75 KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 75 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.|+.... ..+ .+.++ +++++||+||+++++|.++..++.+ ...+.+.+++..+.|.++.+ +.+++
T Consensus 54 -~~~~~~~----------v~i-~~~~~-~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vl 119 (326)
T 3pqe_A 54 -KAFAPQP----------VKT-SYGTY-EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFL 119 (326)
T ss_dssp -GGGSSSC----------CEE-EEECG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEE
T ss_pred -cccccCC----------eEE-EeCcH-HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEE
Confidence 4432111 122 24455 5899999999999998765432111 11234556677777777654 44444
Q ss_pred EecCCchHHHHHHH
Q psy11160 154 EKSTVPVRAAESIM 167 (598)
Q Consensus 154 ~~STv~~~~~~~~~ 167 (598)
+ -|-|..+.-.++
T Consensus 120 v-vtNPvd~~t~~~ 132 (326)
T 3pqe_A 120 V-ATNPVDILTYAT 132 (326)
T ss_dssp E-CSSSHHHHHHHH
T ss_pred E-cCChHHHHHHHH
Confidence 3 335666554433
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.9e-10 Score=109.03 Aligned_cols=91 Identities=12% Similarity=0.177 Sum_probs=64.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.|+|+|||+|.||..+|..|++ .|++|++||++++ .+.+..
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~---------------------------~G~~V~~~~r~~~-~~~~~~----------- 59 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQ---------------------------CGYSVVFGSRNPQ-VSSLLP----------- 59 (201)
Confidence 4689999999999999999998 7899999999876 333221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.+...+ ++.++++++|+||+|||.+. +++++ .+.+ ..++++||..++..+
T Consensus 60 --------~g~~~~-~~~~~~~~aDvVilav~~~~---------------~~~v~-~l~~-~~~~~ivI~~~~G~~ 109 (201)
T 2yjz_A 60 --------RGAEVL-CYSEAASRSDVIVLAVHREH---------------YDFLA-ELAD-SLKGRVLIDVSNNQK 109 (201)
Confidence 012333 56667889999999997531 22233 3333 346788888777665
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-07 Score=109.16 Aligned_cols=206 Identities=13% Similarity=0.162 Sum_probs=133.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+.||+|||+|.||..+|.+++. .|++|+++|++++.++...+... ..+
T Consensus 315 ~i~~v~ViGaG~MG~gIA~~~a~---------------------------aG~~V~l~D~~~~~l~~~~~~i~----~~l 363 (742)
T 3zwc_A 315 PVSSVGVLGLGTMGRGIAISFAR---------------------------VGISVVAVESDPKQLDAAKKIIT----FTL 363 (742)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECSSHHHHHHHHHHHH----HHH
T ss_pred cccEEEEEcccHHHHHHHHHHHh---------------------------CCCchhcccchHhhhhhHHHHHH----HHH
Confidence 36799999999999999999999 89999999999998776442110 001
Q ss_pred HHHHhh-------hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEe
Q psy11160 84 DEVVKK-------TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEK 155 (598)
Q Consensus 84 ~~~~~~-------~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~ 155 (598)
+....+ ....+++.+++++ ++++||+||-+|+.. ++.=+++++++.+.+++++|+ .++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aDlVIEAV~E~-------------l~iK~~vf~~le~~~~~~aIlASNT 429 (742)
T 3zwc_A 364 EKEASRAHQNGQASAKPKLRFSSSTK-ELSTVDLVVEAVFED-------------MNLKKKVFAELSALCKPGAFLCTNT 429 (742)
T ss_dssp HHHHHHHHTTTCCCCCCCEEEESCGG-GGGSCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred HHHHHhccccchhhhhhhhcccCcHH-HHhhCCEEEEecccc-------------HHHHHHHHHHHhhcCCCCceEEecC
Confidence 111111 0124678888886 699999999999653 334467889999999999988 556
Q ss_pred cCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 156 STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
||+++... +. .++. | + . . .|.
T Consensus 430 Ssl~i~~i---a~-------------------------------~~~~----------p----~-------r-~-ig~-- 450 (742)
T 3zwc_A 430 SALNVDDI---AS-------------------------------STDR----------P----Q-------L-V-IGT-- 450 (742)
T ss_dssp SSSCHHHH---HT-------------------------------TSSC----------G----G-------G-E-EEE--
T ss_pred CcCChHHH---Hh-------------------------------hcCC----------c----c-------c-c-ccc--
Confidence 77776543 11 0000 0 0 0 0 111
Q ss_pred eEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHH
Q psy11160 236 QILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISS 314 (598)
Q Consensus 236 ~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~ 314 (598)
| -++|....+ +. -|+.|... .+++++.+..+.+.+++ .++.+.+ ++ ++.| .+...+
T Consensus 451 H-FfnP~~~m~------LV---Evi~g~~T---s~e~~~~~~~~~~~lgK-~pV~vkd~pG------Fi~N---Ri~~~~ 507 (742)
T 3zwc_A 451 H-FFSPAHVMR------LL---EVIPSRYS---SPTTIATVMSLSKKIGK-IGVVVGNCYG------FVGN---RMLAPY 507 (742)
T ss_dssp E-CCSSTTTCC------EE---EEEECSSC---CHHHHHHHHHHHHHTTC-EEEECCCSTT------TTHH---HHHHHH
T ss_pred c-ccCCCCCCc------eE---EEecCCCC---CHHHHHHHHHHHHHhCC-CCcccCCCCC------ccHH---HHhhHH
Confidence 1 125543322 11 26666544 34788889999998874 5555543 22 2333 234467
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHc
Q psy11160 315 INSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 315 ~nE~~~la~~~gid~~ev~~~l~ 337 (598)
++|...+.+. |+++.++.+++.
T Consensus 508 ~~ea~~l~~e-G~~~~~id~a~~ 529 (742)
T 3zwc_A 508 YNQGFFLLEE-GSKPEDVDGVLE 529 (742)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHH
Confidence 7888887765 799999998884
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.1e-08 Score=99.38 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=65.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+|.||+.+|..|++ .|++|++|+++++.++... +.|.
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~---------------------------~g~~V~~~~r~~~~~~~~~-------~~g~- 46 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQ---------------------------SLPHTTLIGRHAKTITYYT-------VPHA- 46 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHH---------------------------HCTTCEEEESSCEEEEEES-------STTS-
T ss_pred CcEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEEeccCcEEEEe-------cCCe-
Confidence 3799999999999999999999 7899999999865432110 0010
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.....+.+..+++ ..+|+||+||+.. .++++++.+.+.+.++++||.
T Consensus 47 --------~~~~~~~~~~~~~~~~~D~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~ 94 (294)
T 3g17_A 47 --------PAQDIVVKGYEDVTNTFDVIIIAVKTH---------------QLDAVIPHLTYLAHEDTLIIL 94 (294)
T ss_dssp --------CCEEEEEEEGGGCCSCEEEEEECSCGG---------------GHHHHGGGHHHHEEEEEEEEE
T ss_pred --------eccceecCchHhcCCCCCEEEEeCCcc---------------CHHHHHHHHHHhhCCCCEEEE
Confidence 0112333444454 7899999998653 367788889999988877664
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=9.1e-09 Score=110.12 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=77.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEe---CCHHHHHH-HHcCCC--C
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVD---KSEERIRQ-WNSNKL--P 77 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d---~~~~~~~~-~~~~~~--~ 77 (598)
+|||+|||+|.||..+|..|+. . |++|++|| +++++++. ++++.. .
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~---------------------------~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~ 54 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAAS---------------------------RDGVEVRVLTLFADEAERWTKALGADELTVI 54 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTT---------------------------STTEEEEEECCSTTHHHHHHHHHTTSCEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEEeCCCCcHHHHHHHHhhccceee
Confidence 3799999999999999999987 4 99999999 98999888 444321 1
Q ss_pred CCCCChHHHHhhhcCCce-EEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 78 IYEPGLDEVVKKTRDVNL-FFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
..+++.++. ....++ .+++++++++++||+||+|||++ .++++++.|.+.++++++|+..
T Consensus 55 ~~~~~~~~~---~~~~~~~~~~~~~~~a~~~aD~Vilav~~~---------------~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 55 VNEKDGTQT---EVKSRPKVITKDPEIAISGADVVILTVPAF---------------AHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp EECSSSCEE---EEEECCSEEESCHHHHHTTCSEEEECSCGG---------------GHHHHHHHHTTTCCTTCEEEET
T ss_pred eecCCCccc---eeeccceEEeCCHHHHhCCCCEEEEeCchH---------------HHHHHHHHHHhhCCCCcEEEEc
Confidence 111111000 000123 37788988899999999999765 2577888999999989887763
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-08 Score=101.48 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=83.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.||.++|..|+. .| ++|+++|+++++++.+....
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~---------------------------~g~~~~V~l~d~~~~~~~~~~~~l-------- 46 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIA---------------------------QGVADDYVFIDANEAKVKADQIDF-------- 46 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HTCCSEEEEECSSHHHHHHHHHHH--------
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCCCEEEEEcCCHHHHHHHHHHH--------
Confidence 699999999999999999999 66 79999999999888765310
Q ss_pred HHHHhhhcCCceEE-ecCHHHHhccCcEEEEecCCCCC----CCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFF-STDIKSAIQKAQLIFISVNTPTK----TFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~adviii~v~tp~~----~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.+... ......+. ++++ +++++||+||++++.|.. +...+.+ ...++..++++++.|.++. ++.+++. .|
T Consensus 47 ~~~~~-~~~~~~~~~~~d~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~-~t 122 (309)
T 1hyh_A 47 QDAMA-NLEAHGNIVINDW-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVV-IS 122 (309)
T ss_dssp HHHGG-GSSSCCEEEESCG-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEE-CS
T ss_pred Hhhhh-hcCCCeEEEeCCH-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-Ec
Confidence 00000 00112333 5677 689999999999988753 2211100 1123455778888888776 4666655 78
Q ss_pred CchHHHHHHHH
Q psy11160 158 VPVRAAESIMN 168 (598)
Q Consensus 158 v~~~~~~~~~~ 168 (598)
.|.+....++.
T Consensus 123 Np~~~~~~~~~ 133 (309)
T 1hyh_A 123 NPVDVITALFQ 133 (309)
T ss_dssp SSHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 88887655543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-08 Score=103.15 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=78.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..++. .|++|++||+++++.+.+...
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~---------- 197 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKP---------------------------FGVQRFLYTGRQPRPEEAAEF---------- 197 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG---------------------------GTCCEEEEESSSCCHHHHHTT----------
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCCCcchhHHHhc----------
Confidence 3689999999999999999988 789999999987655544321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+...+ ++.+++++||+|++++|.+....+ ..+ +.+.+.++++.++|+.|+.++...+
T Consensus 198 ---------g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~-----~i~--------~~~~~~mk~gailIn~srg~~v~~~ 254 (330)
T 2gcg_A 198 ---------QAEFV-STPELAAQSDFIVVACSLTPATEG-----LCN--------KDFFQKMKETAVFINISRGDVVNQD 254 (330)
T ss_dssp ---------TCEEC-CHHHHHHHCSEEEECCCCCTTTTT-----CBS--------HHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred ---------CceeC-CHHHHHhhCCEEEEeCCCChHHHH-----hhC--------HHHHhcCCCCcEEEECCCCcccCHH
Confidence 23344 778889999999999987532111 111 3456678999999999999887776
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 255 aL~~ 258 (330)
T 2gcg_A 255 DLYQ 258 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-07 Score=93.67 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=62.4
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
|....|||+|||+|.||.+||..|++ +|++|++||+.
T Consensus 2 ~~~~~mkI~IIG~G~~G~sLA~~L~~---------------------------~G~~V~~~~~~---------------- 38 (232)
T 3dfu_A 2 MQAPRLRVGIFDDGSSTVNMAEKLDS---------------------------VGHYVTVLHAP---------------- 38 (232)
T ss_dssp -CCCCCEEEEECCSCCCSCHHHHHHH---------------------------TTCEEEECSSG----------------
T ss_pred CCCCCcEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEecCH----------------
Confidence 33456899999999999999999999 89999999982
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+.+++|| |+|||.. .+.++++++.+.++++++|++.|..
T Consensus 39 ----------------------~~~~~aD--ilavP~~---------------ai~~vl~~l~~~l~~g~ivvd~sgs 77 (232)
T 3dfu_A 39 ----------------------EDIRDFE--LVVIDAH---------------GVEGYVEKLSAFARRGQMFLHTSLT 77 (232)
T ss_dssp ----------------------GGGGGCS--EEEECSS---------------CHHHHHHHHHTTCCTTCEEEECCSS
T ss_pred ----------------------HHhccCC--EEEEcHH---------------HHHHHHHHHHHhcCCCCEEEEECCc
Confidence 1256789 9998764 3678888999999999999987644
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.9e-08 Score=102.12 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=84.4
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC--HHHHHHHHcCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS--EERIRQWNSNKLP 77 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~--~~~~~~~~~~~~~ 77 (598)
|+.+.+||+|||+|.||.++|..|+. .|+ +|+++|++ +++.+....
T Consensus 4 m~~~~~kv~ViGaG~vG~~ia~~l~~---------------------------~g~~~v~l~D~~~~~~~~~g~a~---- 52 (315)
T 3tl2_A 4 MTIKRKKVSVIGAGFTGATTAFLLAQ---------------------------KELADVVLVDIPQLENPTKGKAL---- 52 (315)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECCGGGHHHHHHHHH----
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEeccchHHHHHHhhh----
Confidence 44456799999999999999999999 788 99999999 666654331
Q ss_pred CCCCChHHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 78 IYEPGLDEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 78 ~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
++.+..... ...+++.+++++ ++++||+||+++++|.++..++.+ -..+.+.+++..+.|.++. ++.++++-
T Consensus 53 ----dl~~~~~~~~~~~~i~~t~d~~-a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvv 126 (315)
T 3tl2_A 53 ----DMLEASPVQGFDANIIGTSDYA-DTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVL 126 (315)
T ss_dssp ----HHHHHHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred ----hHHHhhhhccCCCEEEEcCCHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEC
Confidence 011111000 234677788875 899999999999998876432111 1123445667777777776 44444443
Q ss_pred cCCchHHHHHHH
Q psy11160 156 STVPVRAAESIM 167 (598)
Q Consensus 156 STv~~~~~~~~~ 167 (598)
| -|..+.-.++
T Consensus 127 s-NPvd~~t~~~ 137 (315)
T 3tl2_A 127 T-NPVDAMTYSV 137 (315)
T ss_dssp C-SSHHHHHHHH
T ss_pred C-ChHHHHHHHH
Confidence 3 4555554433
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-08 Score=104.74 Aligned_cols=103 Identities=12% Similarity=0.193 Sum_probs=77.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..++. .|++|++||+++++ +.....
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~---------------------------~G~~V~~~d~~~~~-~~~~~~---------- 191 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKG---------------------------FNMRILYYSRTRKE-EVEREL---------- 191 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCH-HHHHHH----------
T ss_pred CCEEEEEccCHHHHHHHHHHHh---------------------------CCCEEEEECCCcch-hhHhhc----------
Confidence 3689999999999999999999 79999999998876 433210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+... .++.+++++||+|++++|.+....+ +. .+.+.+.++++.++|+.|+.++...+
T Consensus 192 ---------g~~~-~~l~~~l~~aDvVil~vp~~~~t~~-----------~i--~~~~~~~mk~~ailIn~srg~~v~~~ 248 (334)
T 2dbq_A 192 ---------NAEF-KPLEDLLRESDFVVLAVPLTRETYH-----------LI--NEERLKLMKKTAILINIARGKVVDTN 248 (334)
T ss_dssp ---------CCEE-CCHHHHHHHCSEEEECCCCCTTTTT-----------CB--CHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred ---------Cccc-CCHHHHHhhCCEEEECCCCChHHHH-----------hh--CHHHHhcCCCCcEEEECCCCcccCHH
Confidence 1233 4778889999999999987642211 11 03456778999999999999887776
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 249 aL~~ 252 (334)
T 2dbq_A 249 ALVK 252 (334)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.8e-08 Score=99.76 Aligned_cols=118 Identities=15% Similarity=0.300 Sum_probs=76.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcC---CCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSN---KLPIYE 80 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~---~~~~~e 80 (598)
|||+|||+|.||.++|..|+. .|+ +|+++|+++++++..... ..++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~---------------------------~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~- 52 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVL---------------------------RGSCSELVLVDRDEDRAQAEAEDIAHAAPVS- 52 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCCSEEEEECSSHHHHHHHHHHHTTSCCTT-
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCCCEEEEEeCCHHHHHHHHHhhhhhhhhc-
Confidence 599999999999999999999 788 999999999877643211 11110
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
...+++. +++ +++++||+||++++.|.++..++.+ ...++..++++++.|.++. ++.++++ .|-|
T Consensus 53 ----------~~~~i~~-~~~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~-~tNP 118 (304)
T 2v6b_A 53 ----------HGTRVWH-GGH-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLV-TSNP 118 (304)
T ss_dssp ----------SCCEEEE-ECG-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEE-CSSS
T ss_pred ----------CCeEEEE-CCH-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEE-ecCc
Confidence 0123443 455 5899999999999888654322111 1235667788888998884 6766665 5777
Q ss_pred hHHHHH
Q psy11160 160 VRAAES 165 (598)
Q Consensus 160 ~~~~~~ 165 (598)
.+..-.
T Consensus 119 ~~~~~~ 124 (304)
T 2v6b_A 119 VDLLTD 124 (304)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 776533
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.9e-08 Score=98.46 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=82.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHH----HHcCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQ----WNSNKLPIY 79 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~----~~~~~~~~~ 79 (598)
|||+|||+|.||.++|..|+. .|+ +|++||+++++++. ++....++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~---------------------------~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~- 52 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLL---------------------------NLDVDEIALVDIAEDLAVGEAMDLAHAAAGI- 52 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HSCCSEEEEECSSHHHHHHHHHHHHHHHHTT-
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCCCeEEEEECChHHHHHHHHHHHhhhhhc-
Confidence 699999999999999999998 566 99999999998762 11110000
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
....++++++| .+++++||+||++.+.|.++..++.+ ...+.+.+++..+.|.++ .++.++++-| -
T Consensus 53 ----------~~~~~i~~t~d-~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvs-N 119 (294)
T 1oju_A 53 ----------DKYPKIVGGAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT-N 119 (294)
T ss_dssp ----------TCCCEEEEESC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS-S
T ss_pred ----------CCCCEEEEeCC-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeC-C
Confidence 01235777888 56999999999999998765432111 112345566677777776 4556665544 5
Q ss_pred chHHHHHHH
Q psy11160 159 PVRAAESIM 167 (598)
Q Consensus 159 ~~~~~~~~~ 167 (598)
|..+.-.++
T Consensus 120 Pvd~~t~~~ 128 (294)
T 1oju_A 120 PMDVMTYIM 128 (294)
T ss_dssp SHHHHHHHH
T ss_pred cchHHHHHH
Confidence 666654444
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.6e-08 Score=99.63 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=84.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.+||+|||+|++|.++|..|+. .| .+|.++|+++++++.... .
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~---------------------------~~~~~ei~L~Di~~~~~~g~~~--------d 50 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVN---------------------------QSIVDELVIIDLDTEKVRGDVM--------D 50 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------HCSCSEEEEECSCHHHHHHHHH--------H
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCCCEEEEEeCChhHhhhhhh--------h
Confidence 4799999999999999999998 44 599999999987764211 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.+.. .......+.+.+..+++++||+||++++.|.++..++.+ ...+...++++.+.|.++ .++.++++ .|.|++
T Consensus 51 l~~~~-~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv-~tNPv~ 127 (317)
T 3d0o_A 51 LKHAT-PYSPTTVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLV-ATNPVD 127 (317)
T ss_dssp HHHHG-GGSSSCCEEEECCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEE-CSSSHH
T ss_pred HHhhh-hhcCCCeEEEeCCHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEE-ecCcHH
Confidence 11110 011112333334456899999999999998765321000 123456677777888887 46677666 679999
Q ss_pred HHHHHHH
Q psy11160 162 AAESIMN 168 (598)
Q Consensus 162 ~~~~~~~ 168 (598)
+.-.++.
T Consensus 128 ~~t~~~~ 134 (317)
T 3d0o_A 128 ILAYATW 134 (317)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-08 Score=99.70 Aligned_cols=119 Identities=19% Similarity=0.309 Sum_probs=81.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.||.++|..|+. .|+ +|+++|+++++++.+... +
T Consensus 1 mkI~VIGaG~~G~~la~~l~~---------------------------~g~~~~V~l~D~~~~~~~~~~~~--------l 45 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLM---------------------------KGFAREMVLIDVDKKRAEGDALD--------L 45 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HTCCSEEEEECSSHHHHHHHHHH--------H
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCCCeEEEEeCChHHHHHHHHH--------H
Confidence 589999999999999999999 678 999999999988765421 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcc-----hHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAAD-----LKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.+........++.. +++ +++++||+||+++|+|..+..+ ..| .+.++++++.|.++. ++.+++. .|.
T Consensus 46 ~~~~~~~~~~~i~~-~d~-~~~~~aDvViiav~~~~~~g~~----r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~-~tN 117 (319)
T 1a5z_A 46 IHGTPFTRRANIYA-GDY-ADLKGSDVVIVAAGVPQKPGET----RLQLLGRNARVMKEIARNVSKYA-PDSIVIV-VTN 117 (319)
T ss_dssp HHHGGGSCCCEEEE-CCG-GGGTTCSEEEECCCCCCCSSCC----HHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSS
T ss_pred HhhhhhcCCcEEEe-CCH-HHhCCCCEEEEccCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-eCC
Confidence 00000000123444 465 5789999999999988654211 222 334677888888885 5555544 577
Q ss_pred chHHHHHHH
Q psy11160 159 PVRAAESIM 167 (598)
Q Consensus 159 ~~~~~~~~~ 167 (598)
|.+....++
T Consensus 118 p~~~~~~~~ 126 (319)
T 1a5z_A 118 PVDVLTYFF 126 (319)
T ss_dssp SHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 887765444
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=98.42 Aligned_cols=123 Identities=21% Similarity=0.272 Sum_probs=83.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHH--HH--HcCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIR--QW--NSNKLP 77 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~--~~--~~~~~~ 77 (598)
++|||+|||+|.||.++|..|+. .|+ +|+++|+++++++ .+ ..+. +
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~---------------------------~g~~~~V~l~d~~~~~~~~~~~~~~~~~-~ 57 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQ---------------------------RGIAREIVLEDIAKERVEAEVLDMQHGS-S 57 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH---------------------------TTCCSEEEEECSSHHHHHHHHHHHHHTG-G
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCCEEEEEeCChhHHHHHHHHHHhhh-h
Confidence 35799999999999999999999 788 9999999998876 22 2332 1
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+.. ..+++.++++ +++++||+||++++.|..+...+.+ -..+...++++++.|.++ .++.+|+. .
T Consensus 58 ~~~-----------~~~v~~~~~~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~-~ 123 (319)
T 1lld_A 58 FYP-----------TVSIDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYML-I 123 (319)
T ss_dssp GST-----------TCEEEEESCG-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE-C
T ss_pred hcC-----------CeEEEeCCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE-e
Confidence 110 1345666676 4789999999999887643210000 011345566778888876 56666554 6
Q ss_pred CCchHHHHHHHH
Q psy11160 157 TVPVRAAESIMN 168 (598)
Q Consensus 157 Tv~~~~~~~~~~ 168 (598)
|-|.+....++.
T Consensus 124 ~Np~~~~~~~~~ 135 (319)
T 1lld_A 124 TNPVDIATHVAQ 135 (319)
T ss_dssp CSSHHHHHHHHH
T ss_pred cCchHHHHHHHH
Confidence 778887765554
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-08 Score=100.32 Aligned_cols=124 Identities=21% Similarity=0.265 Sum_probs=81.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.||.++|..|+. .|+ +|+++|+++++++.... .+
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~---------------------------~~~~~v~L~Di~~~~~~g~~~--------dl 51 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGL---------------------------KELGDVVLFDIAEGTPQGKGL--------DI 51 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECSSSSHHHHHHH--------HH
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEeCCchhHHHHHH--------HH
Confidence 4799999999999999999999 677 99999999988753221 01
Q ss_pred HHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+.... ....++.+++|+ +++++||+||++.+.|.++..++.+ -..+...+++..+.|.++. ++.++++-| -|..
T Consensus 52 ~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvt-NPvd 128 (324)
T 3gvi_A 52 AESSPVDGFDAKFTGANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICIT-NPLD 128 (324)
T ss_dssp HHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC-SSHH
T ss_pred hchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecC-CCcH
Confidence 111000 013467788888 6999999999999998765432111 1224566777778888876 455444433 4555
Q ss_pred HHHHH
Q psy11160 162 AAESI 166 (598)
Q Consensus 162 ~~~~~ 166 (598)
..-.+
T Consensus 129 ~~t~~ 133 (324)
T 3gvi_A 129 AMVWA 133 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54333
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=98.48 Aligned_cols=126 Identities=10% Similarity=0.108 Sum_probs=85.8
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
..+||+|||+|.||.++|..++. .|+ +|+++|+++++++.....
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~---------------------------~g~~~ev~L~Di~~~~~~g~a~D------- 65 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLM---------------------------KDLADEVALVDVMEDKLKGEMMD------- 65 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHH---------------------------HCCCSEEEEECSCHHHHHHHHHH-------
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCCeEEEEECCHHHHHHHHHH-------
Confidence 35799999999999999999998 454 999999999887753210
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
+.+........++..++|++ ++++||+||++.+.|.++..++.+ -..+.+.+++..+.|.++. ++.++++-| -|.
T Consensus 66 -L~~~~~~~~~~~i~~t~d~~-~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvt-NPv 141 (330)
T 3ldh_A 66 -LEHGSLFLHTAKIVSGKDYS-VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHP-ELG 141 (330)
T ss_dssp -HHHHGGGSCCSEEEEESSSC-SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECS-SSH
T ss_pred -hhhhhhcccCCeEEEcCCHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCC-Ccc
Confidence 11100000124577888997 599999999999999876543322 2334566777888888884 555554433 455
Q ss_pred HHHHHHH
Q psy11160 161 RAAESIM 167 (598)
Q Consensus 161 ~~~~~~~ 167 (598)
+..-.++
T Consensus 142 di~t~~~ 148 (330)
T 3ldh_A 142 TDKNKQD 148 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=98.44 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=80.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHH----HHcCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQ----WNSNKLP 77 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~----~~~~~~~ 77 (598)
++||+|||+ |+||.++|..++. .| .+|+++|+++++++. ++.+.
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~---------------------------~g~~~evvLiDi~~~k~~g~a~DL~~~~-- 58 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAM---------------------------MRLTPNLCLYDPFAVGLEGVAEEIRHCG-- 58 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHH---------------------------TTCCSCEEEECSCHHHHHHHHHHHHHHC--
T ss_pred CCEEEEECCCChHHHHHHHHHHh---------------------------cCCCCEEEEEeCCchhHHHHHHhhhhCc--
Confidence 579999998 9999999999998 45 589999999988775 44331
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCc-EEEEe
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNK-IVVEK 155 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-ivv~~ 155 (598)
+ + ..++++++++.+++++||+||++.++|.++..++.+ -..+.+.+++..+.|.++.++.. +++.
T Consensus 59 ~--~----------~~~i~~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvv- 125 (343)
T 3fi9_A 59 F--E----------GLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIII- 125 (343)
T ss_dssp C--T----------TCCCEEESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEC-
T ss_pred C--C----------CCceEEcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEe-
Confidence 1 1 135778899988999999999999988765432111 11234556667777777775554 3443
Q ss_pred cCCchHHHHHHH
Q psy11160 156 STVPVRAAESIM 167 (598)
Q Consensus 156 STv~~~~~~~~~ 167 (598)
|-|.++.-.++
T Consensus 126 -sNPvd~~t~i~ 136 (343)
T 3fi9_A 126 -FNPADITGLVT 136 (343)
T ss_dssp -SSSHHHHHHHH
T ss_pred -cCchHHHHHHH
Confidence 56777665554
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-07 Score=96.85 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=61.5
Q ss_pred CceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||+|||+|.+ |.++|..|+.+.+.+ ++.+|++||+++++++..+.-.
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l----------------------~~~eV~L~Di~~e~~~~~~~~~-------- 77 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEF----------------------PIRKLKLYDNDKERQDRIAGAC-------- 77 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTS----------------------CEEEEEEECSCHHHHHHHHHHH--------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCC----------------------CCCEEEEEeCCHHHHHHHHHHH--------
Confidence 469999999999 556787888810000 2789999999999988765210
Q ss_pred HHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCC
Q psy11160 84 DEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTK 120 (598)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~ 120 (598)
..++.. ..+.++++++|+.+++++||+||+++|.+..
T Consensus 78 ~~~l~~~~~~~~I~~t~D~~eal~~AD~VViaag~~~~ 115 (472)
T 1u8x_X 78 DVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKY 115 (472)
T ss_dssp HHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCTTHH
T ss_pred HHHhccCCCCCEEEEECCHHHHHcCCCEEEEcCCCccc
Confidence 111111 1235688899998899999999999988643
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-07 Score=94.76 Aligned_cols=125 Identities=15% Similarity=0.234 Sum_probs=83.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.||.++|..|+. .|+ +|+++|+++++++....- +
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~---------------------------~~~~~v~l~Di~~~~~~g~a~d--------L 49 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALI---------------------------KQLGDVVLFDIAQGMPNGKALD--------L 49 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECSSSSHHHHHHHH--------H
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCceEEEEeCChHHHHHHHHH--------H
Confidence 4799999999999999999999 566 999999999887532210 0
Q ss_pred HHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+.... ....+++.++++ +++++||+||++.+.|.++..++.+ -..+.+.+++..+.|.++. ++.++++- |-|.+
T Consensus 50 ~~~~~~~~~~~~v~~t~d~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvd 126 (321)
T 3p7m_A 50 LQTCPIEGVDFKVRGTNDY-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICI-TNPLD 126 (321)
T ss_dssp HTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHH
T ss_pred HhhhhhcCCCcEEEEcCCH-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEe-cCchH
Confidence 000000 012356777787 5899999999999988765432111 1124566777778888887 55555444 57777
Q ss_pred HHHHHH
Q psy11160 162 AAESIM 167 (598)
Q Consensus 162 ~~~~~~ 167 (598)
..-.++
T Consensus 127 ~~t~~~ 132 (321)
T 3p7m_A 127 IMVNML 132 (321)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 764444
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.53 E-value=8.6e-08 Score=100.93 Aligned_cols=106 Identities=8% Similarity=0.072 Sum_probs=78.7
Q ss_pred CceEEEECCChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||..+|..++ . .|++|++||+++++.+...+
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~---------------------------~G~~V~~~d~~~~~~~~~~~---------- 205 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHG---------------------------LGMKLVYYDVAPADAETEKA---------- 205 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT---------------------------TCCEEEEECSSCCCHHHHHH----------
T ss_pred CCEEEEEEECHHHHHHHHHHHHh---------------------------cCCEEEEECCCCcchhhHhh----------
Confidence 368999999999999999999 7 78999999998765543321
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.+...++++++++++||+|++++|...... .+. .+.+.+.++++.++|+.|+.++...
T Consensus 206 ---------~g~~~~~~l~ell~~aDvVil~vp~~~~t~-----------~li--~~~~l~~mk~gailin~srg~~vd~ 263 (348)
T 2w2k_A 206 ---------LGAERVDSLEELARRSDCVSVSVPYMKLTH-----------HLI--DEAFFAAMKPGSRIVNTARGPVISQ 263 (348)
T ss_dssp ---------HTCEECSSHHHHHHHCSEEEECCCCSGGGT-----------TCB--CHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred ---------cCcEEeCCHHHHhccCCEEEEeCCCChHHH-----------HHh--hHHHHhcCCCCCEEEECCCCchhCH
Confidence 013344578888999999999997643211 111 0245567899999999999988877
Q ss_pred HHHHHH
Q psy11160 164 ESIMNV 169 (598)
Q Consensus 164 ~~~~~~ 169 (598)
+.+...
T Consensus 264 ~aL~~a 269 (348)
T 2w2k_A 264 DALIAA 269 (348)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.8e-07 Score=94.01 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=79.8
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHH----cCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWN----SNK 75 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~----~~~ 75 (598)
|++.+||+|||+|.+|.+++..|+. .++ +++++|+++++++... ...
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~---------------------------~~~~~el~L~Di~~~~~~g~~~dl~~~~ 54 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQ---------------------------QGIAEEFVIVDVVKDRTKGDALDLEDAQ 54 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHH---------------------------HTCCSEEEEECSSHHHHHHHHHHHHGGG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHc---------------------------CCCCCEEEEEeCCchHHHHHHHHHHHHH
Confidence 4566899999999999999999998 343 8999999998887422 111
Q ss_pred CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 76 LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 76 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
++ ....+.+.+..+++++||+||++.+.|.++..++.+ ...+...+++..+.|.++. ++.++++
T Consensus 55 -~~-------------~~~~~v~~~~~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv 119 (318)
T 1ez4_A 55 -AF-------------TAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLV 119 (318)
T ss_dssp -GG-------------SCCCEEEECCGGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred -Hh-------------cCCeEEEECCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 11 012333334456899999999999988765322111 1123366777777777775 5555555
Q ss_pred ecCCchHHHHHHHH
Q psy11160 155 KSTVPVRAAESIMN 168 (598)
Q Consensus 155 ~STv~~~~~~~~~~ 168 (598)
- |-|.+..-.++.
T Consensus 120 ~-tNPv~~~t~~~~ 132 (318)
T 1ez4_A 120 A-ANPVDILTYATW 132 (318)
T ss_dssp C-SSSHHHHHHHHH
T ss_pred e-CCcHHHHHHHHH
Confidence 3 888888755554
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.7e-07 Score=94.38 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=78.7
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHH--HHHHHcCCCCC
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEER--IRQWNSNKLPI 78 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~--~~~~~~~~~~~ 78 (598)
+.|||+|+| +|++|.+++..|+. .| ++|+++|++++. +..+.....
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~---------------------------~g~~~ev~l~Di~~~~~~~~dL~~~~~-- 57 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKM---------------------------NPLVSVLHLYDVVNAPGVTADISHMDT-- 57 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHH---------------------------CTTEEEEEEEESSSHHHHHHHHHTSCS--
T ss_pred CCCEEEEECCCChHHHHHHHHHHh---------------------------CCCCCEEEEEeCCCcHhHHHHhhcccc--
Confidence 457999999 79999999999998 66 899999998762 222332211
Q ss_pred CCCChHHHHhhhcCCceEE---ecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 79 YEPGLDEVVKKTRDVNLFF---STDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
...++. ++|+.+++++||+||++.+.|..+...+.+ ...+...++++++.+.+.. ++.+|++
T Consensus 58 -------------~~~v~~~~~t~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv 123 (326)
T 1smk_A 58 -------------GAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNL 123 (326)
T ss_dssp -------------SCEEEEEESHHHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred -------------cceEEEEeCCCCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE
Confidence 113444 457888999999999999988754321100 1122356667777777766 4555555
Q ss_pred ecCCchHHH
Q psy11160 155 KSTVPVRAA 163 (598)
Q Consensus 155 ~STv~~~~~ 163 (598)
+|.|.+++
T Consensus 124 -~SNPv~~~ 131 (326)
T 1smk_A 124 -ISNPVNST 131 (326)
T ss_dssp -CCSSHHHH
T ss_pred -ECCchHHH
Confidence 78999985
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.5e-07 Score=80.53 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=38.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.|+|+|+|+|.+|..+|..|++ .|++|+++|+++++++.+.+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~---------------------------~g~~v~~~d~~~~~~~~~~~ 45 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE---------------------------KGHDIVLIDIDKDICKKASA 45 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHH
Confidence 4799999999999999999999 79999999999999988764
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-06 Score=90.15 Aligned_cols=112 Identities=15% Similarity=0.225 Sum_probs=80.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHH--HHHcCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIR--QWNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~--~~~~~~~~~~e 80 (598)
|||+|||+ |++|.+++..|+. .| .+|+++|+++.+.. .+....
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~---------------------------~~~~~ev~L~Di~~~~~~a~dL~~~~----- 48 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKN---------------------------SPLVSRLTLYDIAHTPGVAADLSHIE----- 48 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHT---------------------------CTTCSEEEEEESSSHHHHHHHHTTSS-----
T ss_pred CEEEEECCCChHHHHHHHHHHh---------------------------CCCCcEEEEEeCCccHHHHHHHhccC-----
Confidence 59999998 9999999999998 55 79999999872222 222211
Q ss_pred CChHHHHhhhcCCceEE---ecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcch-----HHHHHHHHHHHHHcCCCcEE
Q psy11160 81 PGLDEVVKKTRDVNLFF---STDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADL-----KYVEAAARMIAEIATDNKIV 152 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~iv 152 (598)
...+++. ++|+++++++||+||++.+.|.++..+ ..|+ ..++++.+.|.++.+.. ++
T Consensus 49 ----------~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~~g~~----r~dl~~~n~~i~~~i~~~i~~~~p~a-~v 113 (314)
T 1mld_A 49 ----------TRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMT----RDDLFNTNATIVATLTAACAQHCPDA-MI 113 (314)
T ss_dssp ----------SSCEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCC----GGGGHHHHHHHHHHHHHHHHHHCTTS-EE
T ss_pred ----------cCceEEEecCCCCHHHHhCCCCEEEECCCcCCCCCCc----HHHHHHHHHHHHHHHHHHHHhhCCCe-EE
Confidence 0123555 357888999999999999988765332 2344 77888888888887444 44
Q ss_pred EEecCCchHHHHH
Q psy11160 153 VEKSTVPVRAAES 165 (598)
Q Consensus 153 v~~STv~~~~~~~ 165 (598)
++ .|-|.+..-.
T Consensus 114 iv-~sNPv~~~~~ 125 (314)
T 1mld_A 114 CI-ISNPVNSTIP 125 (314)
T ss_dssp EE-CSSCHHHHHH
T ss_pred EE-ECCCcchhHH
Confidence 44 4788887753
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=96.67 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=78.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||++++..+
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~---------------------------~G~~V~~~dr~~~~~~--------------- 159 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKA---------------------------FGMRVIAYTRSSVDQN--------------- 159 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------HTCEEEEECSSCCCTT---------------
T ss_pred cchheeeccCchhHHHHHHHHh---------------------------hCcEEEEEeccccccc---------------
Confidence 3689999999999999999998 7999999999753321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
......++++++++||+|++++|......+ .. -+...+.++++.++|+.|+..+-..+
T Consensus 160 ---------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~ 217 (290)
T 3gvx_A 160 ---------VDVISESPADLFRQSDFVLIAIPLTDKTRG-----MV--------NSRLLANARKNLTIVNVARADVVSKP 217 (290)
T ss_dssp ---------CSEECSSHHHHHHHCSEEEECCCCCTTTTT-----CB--------SHHHHTTCCTTCEEEECSCGGGBCHH
T ss_pred ---------cccccCChHHHhhccCeEEEEeeccccchh-----hh--------hHHHHhhhhcCceEEEeehhcccCCc
Confidence 123456888899999999999984322111 11 14566789999999999999988887
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+...|
T Consensus 218 aL~~aL 223 (290)
T 3gvx_A 218 DMIGFL 223 (290)
T ss_dssp HHHHHH
T ss_pred chhhhh
Confidence 777644
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-07 Score=98.35 Aligned_cols=102 Identities=10% Similarity=0.169 Sum_probs=76.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..++. .|++|++||++++... +
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~---------------------------~G~~V~~~dr~~~~~~----g---------- 202 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEA---------------------------FDCPISYFSRSKKPNT----N---------- 202 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEECSSCCTTC----C----------
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEECCCchhcc----C----------
Confidence 3689999999999999999998 7899999999764321 1
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.....++++++++||+|++++|...... .+. -+.+.+.++++.++|+.|+..+-..+
T Consensus 203 ----------~~~~~~l~ell~~aDvVil~vP~~~~t~-----------~li--~~~~l~~mk~gailIn~srG~~vd~~ 259 (333)
T 3ba1_A 203 ----------YTYYGSVVELASNSDILVVACPLTPETT-----------HII--NREVIDALGPKGVLINIGRGPHVDEP 259 (333)
T ss_dssp ----------SEEESCHHHHHHTCSEEEECSCCCGGGT-----------TCB--CHHHHHHHCTTCEEEECSCGGGBCHH
T ss_pred ----------ceecCCHHHHHhcCCEEEEecCCChHHH-----------HHh--hHHHHhcCCCCCEEEECCCCchhCHH
Confidence 2345678888999999999997642211 111 02345577899999999999888777
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+...|
T Consensus 260 aL~~aL 265 (333)
T 3ba1_A 260 ELVSAL 265 (333)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=91.46 Aligned_cols=127 Identities=16% Similarity=0.173 Sum_probs=85.0
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-------ceEEEEeCC----HHHH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-------IQVTVVDKS----EERI 68 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~v~~~d~~----~~~~ 68 (598)
|.++.|||+|+|+ |++|.+++..|+. .| .+|.++|++ +++.
T Consensus 1 m~~~~~KI~ViGaaG~VG~~l~~~L~~---------------------------~~~~~~~~~~ev~l~Di~~~~~~~~~ 53 (329)
T 1b8p_A 1 MAKTPMRVAVTGAAGQICYSLLFRIAN---------------------------GDMLGKDQPVILQLLEIPNEKAQKAL 53 (329)
T ss_dssp --CCCEEEEESSTTSHHHHHHHHHHHT---------------------------TTTTCTTCCEEEEEECCSCHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHh---------------------------CCCcCCCCCCEEEEEcCCCccccccc
Confidence 5445689999998 9999999999988 44 389999999 6655
Q ss_pred HH----HHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCC-CCCcchHHHHHHHHHHH
Q psy11160 69 RQ----WNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGK-GRAADLKYVEAAARMIA 143 (598)
Q Consensus 69 ~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~-~~~~~~~~~~~~~~~i~ 143 (598)
+. +..+..++ ...++.+++..+++++||+||++.+.|..+..++. ....+...+++.++.+.
T Consensus 54 ~g~~~dl~~~~~~~-------------~~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~ 120 (329)
T 1b8p_A 54 QGVMMEIDDCAFPL-------------LAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120 (329)
T ss_dssp HHHHHHHHTTTCTT-------------EEEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhcccc-------------cCcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 43 34321111 12467788988899999999999887765322100 01123455667777777
Q ss_pred HHcCCCcEEEEecCCchHHHHHHHH
Q psy11160 144 EIATDNKIVVEKSTVPVRAAESIMN 168 (598)
Q Consensus 144 ~~~~~~~ivv~~STv~~~~~~~~~~ 168 (598)
++..++.++++-| .|.+..-.++.
T Consensus 121 ~~~~p~a~ii~~S-NPv~~~t~~~~ 144 (329)
T 1b8p_A 121 AVASRNIKVLVVG-NPANTNAYIAM 144 (329)
T ss_dssp HHSCTTCEEEECS-SSHHHHHHHHH
T ss_pred HhcCCCeEEEEcc-CchHHHHHHHH
Confidence 7764565666555 77777755554
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=89.66 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=79.9
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+++||+|||+|.||.++|..++. ++...+|+++|+++++.+..... +
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~-------------------------~~~~~ev~l~Di~~~~~~~~~~d--------l 51 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMN-------------------------QGIADEIVLIDANESKAIGDAMD--------F 51 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHH-------------------------HTCCSEEEEECSSHHHHHHHHHH--------H
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-------------------------CCCCCEEEEEeCCcchHHHHHhh--------H
Confidence 45799999999999999999988 11124899999999876643211 1
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+... ......+.+++..+++++||+||+++|.|..+...+.+ -..+.+.++++.+.+.++. ++.++++ -|-|.+.
T Consensus 52 ~~~~~-~~~~~~~i~~~~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv-~tNPv~~ 128 (316)
T 1ldn_A 52 NHGKV-FAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLV-ATNPVDI 128 (316)
T ss_dssp HHHTT-SSSSCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEE-CSSSHHH
T ss_pred HHHhh-hcCCCeEEEcCcHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEE-eCCchHH
Confidence 11000 01112333344456899999999999888765321111 1122355666677777776 5555544 3667777
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
.-.++.
T Consensus 129 ~~~~~~ 134 (316)
T 1ldn_A 129 LTYATW 134 (316)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.6e-07 Score=92.43 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=78.8
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHH----cCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWN----SNKLP 77 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~----~~~~~ 77 (598)
+.+||+|||+|.||.+++..|+. .+ -+++++|+++++++... ... +
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~---------------------------~~~~~el~L~Di~~~~~~g~~~dl~~~~-~ 59 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVL---------------------------QGIAQEIGIVDIFKDKTKGDAIDLSNAL-P 59 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH---------------------------HTCCSEEEEECSCHHHHHHHHHHHHTTG-G
T ss_pred CCCEEEEECCCHHHHHHHHHHHc---------------------------CCCCCEEEEEeCCchHhHHHHHHHHHHH-H
Confidence 35799999999999999999988 33 38999999998876532 211 1
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+ ....+++.+..+++++||+||++.+.|.++..++.+ ...+...+++..+.|.++. ++.++++-
T Consensus 60 ~-------------~~~~~i~~~~~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~- 124 (326)
T 2zqz_A 60 F-------------TSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVA- 124 (326)
T ss_dssp G-------------SCCCEEEECCGGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEEC-
T ss_pred h-------------cCCeEEEECCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-
Confidence 1 012333334456899999999999888754321000 0112356677777777775 55555553
Q ss_pred CCchHHHHHHHH
Q psy11160 157 TVPVRAAESIMN 168 (598)
Q Consensus 157 Tv~~~~~~~~~~ 168 (598)
|-|.+..-.++.
T Consensus 125 tNPv~~~t~~~~ 136 (326)
T 2zqz_A 125 ANPVDILTYATW 136 (326)
T ss_dssp SSSHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888755554
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-06 Score=90.26 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=69.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC------CceEEEEeCCHH-HHHHHH-cCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP------NIQVTVVDKSEE-RIRQWN-SNKLP 77 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~v~~~d~~~~-~~~~~~-~~~~~ 77 (598)
+||+|||+|.||.++|..|.+ . |++|++.+++.+ ..+... .|...
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~---------------------------s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v 107 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRD---------------------------SLAEAKSDIVVKIGLRKGSKSFDEARAAGFTE 107 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHH---------------------------HHHHTTCCCEEEEEECTTCSCHHHHHHTTCCT
T ss_pred CEEEEEeEhHHHHHHHHHHHh---------------------------cccccCCCCEEEEEeCCchhhHHHHHHCCCEE
Confidence 799999999999999999999 6 889887665432 233222 23110
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
. . ....++.+++++||+||++||.. ...+++++|.+.++++++|.+.+-
T Consensus 108 ~--------------d--~ta~s~aEAa~~ADVVILaVP~~---------------~~~eVl~eI~p~LK~GaILs~AaG 156 (525)
T 3fr7_A 108 E--------------S--GTLGDIWETVSGSDLVLLLISDA---------------AQADNYEKIFSHMKPNSILGLSHG 156 (525)
T ss_dssp T--------------T--TCEEEHHHHHHHCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEESSS
T ss_pred e--------------c--CCCCCHHHHHhcCCEEEECCChH---------------HHHHHHHHHHHhcCCCCeEEEeCC
Confidence 0 0 01246788999999999998642 234567789999999999876655
Q ss_pred CchH
Q psy11160 158 VPVR 161 (598)
Q Consensus 158 v~~~ 161 (598)
+...
T Consensus 157 f~I~ 160 (525)
T 3fr7_A 157 FLLG 160 (525)
T ss_dssp HHHH
T ss_pred CCHH
Confidence 5443
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-06 Score=93.09 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=96.2
Q ss_pred CCCCCceEEEECCChh--HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYV--GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~v--G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~ 78 (598)
|..+.+||+|||+|.| |..++..|+.. +.+ .| +|++||+++++++.++.-...+
T Consensus 1 m~m~~~KIaVIGaGs~g~g~~la~~l~~~-~~~----------------------~g-eV~L~Di~~e~le~~~~~~~~l 56 (450)
T 3fef_A 1 MSLDQIKIAYIGGGSQGWARSLMSDLSID-ERM----------------------SG-TVALYDLDFEAAQKNEVIGNHS 56 (450)
T ss_dssp --CCCEEEEEETTTCSSHHHHHHHHHHHC-SSC----------------------CE-EEEEECSSHHHHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCChhHhHHHHHHHHHhc-ccc----------------------CC-eEEEEeCCHHHHHHHHHHHHHH
Confidence 4334579999999997 57888888871 111 46 9999999999987665311111
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC------------CCCCCCCCC---CCC--------cchHHH
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT------------PTKTFGNGK---GRA--------ADLKYV 135 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t------------p~~~~~~~~---~~~--------~~~~~~ 135 (598)
.. ...++++|+|+++|+++||+||++++. |.+..-.+. ... -....+
T Consensus 57 ~~----------~~~~I~~TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~ 126 (450)
T 3fef_A 57 GN----------GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIF 126 (450)
T ss_dssp TT----------SCEEEEEESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHH
T ss_pred hc----------cCCeEEEECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHH
Confidence 11 224688999999999999999999963 333221100 000 233456
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccc
Q psy11160 136 EAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 215 (598)
Q Consensus 136 ~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~ 215 (598)
.++++.|.+..+..-+++. |-|.+..-.. +.+. .++.-|+=-++.|.
T Consensus 127 ~~i~~~i~~~~p~a~~i~~--tNPvdi~t~~------------------------------~~k~-~p~~rviG~C~~~~ 173 (450)
T 3fef_A 127 AEIARAIRDYAPESWVINY--TNPMSVCTRV------------------------------LYKV-FPGIKAIGCCHEVF 173 (450)
T ss_dssp HHHHHHHHHHCTTSEEEEC--CSSHHHHHHH------------------------------HHHH-CTTCEEEECCSHHH
T ss_pred HHHHHHHHHHCCCeEEEEe--cCchHHHHHH------------------------------HHHH-CCCCCEEEeCCcHH
Confidence 7777777777644444443 3444332111 1122 24445566678888
Q ss_pred hhhhhHHHHH
Q psy11160 216 RAAESIMNVL 225 (598)
Q Consensus 216 gtt~~~~~~L 225 (598)
++.+.+.+.|
T Consensus 174 ~~~~~~a~~l 183 (450)
T 3fef_A 174 GTQKLLAEMV 183 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776666
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-07 Score=95.06 Aligned_cols=105 Identities=9% Similarity=0.094 Sum_probs=77.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||++.........
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~----------- 201 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRA---------------------------FGMNVLVWGRENSKERARAD----------- 201 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSHHHHHHHHHT-----------
T ss_pred CCEEEEEeECHHHHHHHHHHHh---------------------------CCCEEEEECCCCCHHHHHhc-----------
Confidence 3689999999999999999998 79999999998644222222
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+.....++++++++||+|++++|......+ .. -+...+.++++.++|+.|+.++-..+
T Consensus 202 ---------g~~~~~~l~ell~~aDiV~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRg~~vd~~ 259 (352)
T 3gg9_A 202 ---------GFAVAESKDALFEQSDVLSVHLRLNDETRS-----II--------TVADLTRMKPTALFVNTSRAELVEEN 259 (352)
T ss_dssp ---------TCEECSSHHHHHHHCSEEEECCCCSTTTTT-----CB--------CHHHHTTSCTTCEEEECSCGGGBCTT
T ss_pred ---------CceEeCCHHHHHhhCCEEEEeccCcHHHHH-----hh--------CHHHHhhCCCCcEEEECCCchhhcHH
Confidence 234556888899999999999975332111 11 13456778999999999998776666
Q ss_pred HHHHH
Q psy11160 165 SIMNV 169 (598)
Q Consensus 165 ~~~~~ 169 (598)
.+...
T Consensus 260 aL~~a 264 (352)
T 3gg9_A 260 GMVTA 264 (352)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 56553
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-06 Score=92.00 Aligned_cols=122 Identities=12% Similarity=0.199 Sum_probs=82.3
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHH----HcCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQW----NSNKLP 77 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~----~~~~~~ 77 (598)
..+||+|||+|.||.++|..|+. .|+ +|+++|+++++++.. +... +
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~~---------------------------~~~~~el~L~Di~~~~~~g~a~DL~~~~-~ 69 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISILM---------------------------KDLADELALVDVIEDKLKGEMMDLQHGS-L 69 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHH---------------------------TTCCSEEEEECSCHHHHHHHHHHHHHTG-G
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCceEEEEeCChHHHHHHHHhhhhhh-h
Confidence 35799999999999999999999 555 999999999887753 3221 1
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+. ....+..++|++ ++++||+||++.+.|.++..++.+ -..+...+++..+.|.++. ++.++++-
T Consensus 70 ~~-----------~~~~i~~~~d~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvv- 135 (331)
T 4aj2_A 70 FL-----------KTPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIV- 135 (331)
T ss_dssp GC-----------SCCEEEECSSGG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC-
T ss_pred cc-----------CCCeEEEcCCHH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-
Confidence 10 012456678886 799999999999988776543222 1223456677777888874 44444443
Q ss_pred CCchHHHHHHH
Q psy11160 157 TVPVRAAESIM 167 (598)
Q Consensus 157 Tv~~~~~~~~~ 167 (598)
|-|....-.++
T Consensus 136 tNPvdi~t~~~ 146 (331)
T 4aj2_A 136 SNPVDILTYVA 146 (331)
T ss_dssp SSSHHHHHHHH
T ss_pred cChHHHHHHHH
Confidence 34655543333
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-07 Score=95.77 Aligned_cols=103 Identities=8% Similarity=0.159 Sum_probs=75.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..++. .|++|++||+++++ +...+
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~---------------------------~G~~V~~~d~~~~~-~~~~~----------- 186 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIP---------------------------FGVKLYYWSRHRKV-NVEKE----------- 186 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG---------------------------GTCEEEEECSSCCH-HHHHH-----------
T ss_pred cCEEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEECCCcch-hhhhh-----------
Confidence 3689999999999999999988 78999999998776 32221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+...+ ++++++++||+|++++|......+ +.. +.+.+.++++ ++++.|+..+-..+
T Consensus 187 --------~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~-----------~i~--~~~~~~mk~g-ilin~srg~~vd~~ 243 (333)
T 2d0i_A 187 --------LKARYM-DIDELLEKSDIVILALPLTRDTYH-----------IIN--EERVKKLEGK-YLVNIGRGALVDEK 243 (333)
T ss_dssp --------HTEEEC-CHHHHHHHCSEEEECCCCCTTTTT-----------SBC--HHHHHHTBTC-EEEECSCGGGBCHH
T ss_pred --------cCceec-CHHHHHhhCCEEEEcCCCChHHHH-----------HhC--HHHHhhCCCC-EEEECCCCcccCHH
Confidence 023333 777889999999999987532111 110 2345678899 99999998887776
Q ss_pred HHHHH
Q psy11160 165 SIMNV 169 (598)
Q Consensus 165 ~~~~~ 169 (598)
.+...
T Consensus 244 aL~~a 248 (333)
T 2d0i_A 244 AVTEA 248 (333)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=93.79 Aligned_cols=131 Identities=14% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCCCCceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHHHHcCCCC
Q psy11160 1 MVQTISHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLP 77 (598)
Q Consensus 1 m~~~~~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~ 77 (598)
||++.+||+|||+|.+ |.+++..|+.+.+.+ ++.+|++||+++ ++++..+.-.
T Consensus 3 ~m~~~~KIaVIGaGsv~~~al~~~L~~~~~~l----------------------~~~ev~L~Di~~~~e~~~~~~~~~-- 58 (450)
T 1s6y_A 3 AMDKRLKIATIGGGSSYTPELVEGLIKRYHEL----------------------PVGELWLVDIPEGKEKLEIVGALA-- 58 (450)
T ss_dssp ----CEEEEEETTTCTTHHHHHHHHHHTTTTC----------------------CEEEEEEECCGGGHHHHHHHHHHH--
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHcCCCCC----------------------CCCEEEEEEcCCChHHHHHHHHHH--
Confidence 3444679999999999 888888888710000 268999999999 9887754210
Q ss_pred CCCCChHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCC------------C---------CCcchHHH
Q psy11160 78 IYEPGLDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGK------------G---------RAADLKYV 135 (598)
Q Consensus 78 ~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~------------~---------~~~~~~~~ 135 (598)
..++.. ..+.++++++|+.+++++||+||+++|.+..+..++. + ..-....+
T Consensus 59 ------~~~~~~~~~~~~i~~t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~ 132 (450)
T 1s6y_A 59 ------KRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVI 132 (450)
T ss_dssp ------HHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHH
T ss_pred ------HHHHhhcCCCcEEEEeCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHH
Confidence 111111 1234688889998899999999999987653210000 0 00112456
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 136 EAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 136 ~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+++++.|.++. |+.+++ -.|-|.+..
T Consensus 133 ~~i~~~i~~~~-P~a~ii-~~tNPvdiv 158 (450)
T 1s6y_A 133 LDIIRDMEELC-PDAWLI-NFTNPAGMV 158 (450)
T ss_dssp HHHHHHHHHHC-TTCEEE-ECSSSHHHH
T ss_pred HHHHHHHHHHC-CCeEEE-EeCCcHHHH
Confidence 67777777766 444444 366666553
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.9e-06 Score=90.86 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=82.9
Q ss_pred CceEEEECCChhH--HHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVG--GPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG--~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.+||+|||+|.|| .++|..|+.. . ++ +|++|++||+++++++..+..
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~----------~-----------~l--~~~eV~L~Di~~e~l~~~~~~-------- 51 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKT----------P-----------GL--SGSTVTLMDIDEERLDAILTI-------- 51 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTC----------G-----------GG--TTCEEEEECSCHHHHHHHHHH--------
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc----------C-----------cC--CCCEEEEEeCCHHHHHHHHHH--------
Confidence 4799999999975 5557777750 0 01 389999999999998876531
Q ss_pred hHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCC------------CCCCCCC---CC------------CCcchHH
Q psy11160 83 LDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTP------------TKTFGNG---KG------------RAADLKY 134 (598)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp------------~~~~~~~---~~------------~~~~~~~ 134 (598)
...++.. ....++++++|+.+++++||+||+++|.+ .+.+-.+ .. ..-.+..
T Consensus 52 ~~~~l~~~~~~~~I~~ttD~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i 131 (480)
T 1obb_A 52 AKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKY 131 (480)
T ss_dssp HHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHH
T ss_pred HHHHhccCCCCcEEEEECCHHHHhCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHH
Confidence 1122211 12357888999988999999999999752 1111000 00 1123467
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCchHHHHHH
Q psy11160 135 VEAAARMIAEIATDNKIVVEKSTVPVRAAESI 166 (598)
Q Consensus 135 ~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~ 166 (598)
++++++.|.++.+ +.++ +-.|-|.+..-++
T Consensus 132 ~~~i~~~i~~~~P-~A~i-i~~TNPvdi~t~~ 161 (480)
T 1obb_A 132 FVDIARKIEKLSP-KAWY-LQAANPIFEGTTL 161 (480)
T ss_dssp HHHHHHHHHHHCT-TCEE-EECSSCHHHHHHH
T ss_pred HHHHHHHHHHHCC-CeEE-EEeCCcHHHHHHH
Confidence 7888888888774 4544 3477777765333
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.8e-07 Score=93.13 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=74.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHH----cCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWN----SNKLPI 78 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~----~~~~~~ 78 (598)
.+||+|||+|.||.++|..|+. .|+ +++++|+++++++... ... ++
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~---------------------------~~~~~el~l~D~~~~k~~g~a~DL~~~~-~~ 60 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVL---------------------------QGIAQEIGIVDIFKDKTKGDAIDLEDAL-PF 60 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------HTCCSEEEEECSCHHHHHHHHHHHHTTG-GG
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCCCeEEEEeCChHHHHHHHhhHhhhh-hh
Confidence 4799999999999999999998 454 9999999999887433 221 11
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
. ...+.+++..+++++||+||++.+.|.++..++.+ -..+...+++..+.|.++.+ +.++++- |
T Consensus 61 ~-------------~~~~i~~~~~~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvv-t 125 (326)
T 3vku_A 61 T-------------SPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVA-A 125 (326)
T ss_dssp S-------------CCCEEEECCGGGGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEEC-S
T ss_pred c-------------CCcEEEECcHHHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEc-c
Confidence 0 12334444445899999999999988765443222 12344567777788887765 4444443 4
Q ss_pred CchHHHHHHH
Q psy11160 158 VPVRAAESIM 167 (598)
Q Consensus 158 v~~~~~~~~~ 167 (598)
-|....-.++
T Consensus 126 NPvdi~t~~~ 135 (326)
T 3vku_A 126 NPVDILTYAT 135 (326)
T ss_dssp SSHHHHHHHH
T ss_pred CchHHHHHHH
Confidence 5666554443
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-07 Score=93.43 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=75.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||+++++......|
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~g---------- 184 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIANA---------------------------MGMKVLAYDILDIREKAEKIN---------- 184 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCHHHHHHTT----------
T ss_pred CCEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEECCCcchhHHHhcC----------
Confidence 3689999999999999999998 799999999987764321222
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
... .++++.+++||+|++++|......+ ..+ +...+.++++.++|+.|+..+-..+
T Consensus 185 ----------~~~-~~l~ell~~aDvVvl~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~arg~~vd~~ 240 (313)
T 2ekl_A 185 ----------AKA-VSLEELLKNSDVISLHVTVSKDAKP-----IID--------YPQFELMKDNVIIVNTSRAVAVNGK 240 (313)
T ss_dssp ----------CEE-CCHHHHHHHCSEEEECCCCCTTSCC-----SBC--------HHHHHHSCTTEEEEESSCGGGBCHH
T ss_pred ----------cee-cCHHHHHhhCCEEEEeccCChHHHH-----hhC--------HHHHhcCCCCCEEEECCCCcccCHH
Confidence 222 3677889999999999986432211 111 3455678999999999998776665
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 241 aL~~ 244 (313)
T 2ekl_A 241 ALLD 244 (313)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-06 Score=89.55 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=83.5
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
||+|||+|.||.++|..++. .|+ +|+++|+++++++.... .+.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~---------------------------~~l~el~L~Di~~~~~~g~~~--------dl~~ 45 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMM---------------------------RGYDDLLLIARTPGKPQGEAL--------DLAH 45 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHH---------------------------HTCSCEEEECSSTTHHHHHHH--------HHHH
T ss_pred CEEEECcCHHHHHHHHHHHh---------------------------CCCCEEEEEcCChhhHHHHHH--------HHHH
Confidence 79999999999999999998 455 79999999888764321 0111
Q ss_pred HHh-hhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 86 VVK-KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
... .....+++.++|+ +++++||+||++.+.|.++..++.+ -..+...++++++.|.++. ++.++++- |-|.+..
T Consensus 46 ~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~ 122 (308)
T 2d4a_B 46 AAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVIT-TNPVDAM 122 (308)
T ss_dssp HHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHH
T ss_pred hhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-CCchHHH
Confidence 100 0112457777888 5899999999999988765432111 1223455777778888876 55555553 6688776
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
-.++.
T Consensus 123 t~~~~ 127 (308)
T 2d4a_B 123 TYVMY 127 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.7e-07 Score=93.25 Aligned_cols=99 Identities=13% Similarity=0.149 Sum_probs=66.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||+++++.
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~---------------------------~G~~V~~~dr~~~~~---------------- 207 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEA---------------------------FGMSVRYWNRSTLSG---------------- 207 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECSSCCTT----------------
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCcccc----------------
Confidence 3789999999999999999988 799999999975430
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.......++++++++||+|++++|.... .+..+ +...+.++++.++|+.|+..+-..
T Consensus 208 --------~~~~~~~sl~ell~~aDvVil~vP~t~~--------------t~~li~~~~l~~mk~gailIN~aRG~vvde 265 (340)
T 4dgs_A 208 --------VDWIAHQSPVDLARDSDVLAVCVAASAA--------------TQNIVDASLLQALGPEGIVVNVARGNVVDE 265 (340)
T ss_dssp --------SCCEECSSHHHHHHTCSEEEECC------------------------CHHHHHHTTTTCEEEECSCC-----
T ss_pred --------cCceecCCHHHHHhcCCEEEEeCCCCHH--------------HHHHhhHHHHhcCCCCCEEEECCCCcccCH
Confidence 0123456888899999999999974321 12222 566778999999999999988776
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 266 ~aL~~ 270 (340)
T 4dgs_A 266 DALIE 270 (340)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66655
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5.6e-07 Score=93.58 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=74.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC-CHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK-SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~-~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||.++|..+.. .|++|++||+ +++.......|
T Consensus 146 g~~vgIIG~G~IG~~~A~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~g--------- 189 (320)
T 1gdh_A 146 NKTLGIYGFGSIGQALAKRAQG---------------------------FDMDIDYFDTHRASSSDEASYQ--------- 189 (320)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECSSCCCHHHHHHHT---------
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCCCcChhhhhhcC---------
Confidence 3689999999999999999988 7899999999 76653221112
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.....++++++++||+|++++|......+ . + -+...+.++++.++|+.|+..+-..
T Consensus 190 -----------~~~~~~l~ell~~aDvVil~~p~~~~t~~-----~-----i---~~~~l~~mk~gailIn~arg~~vd~ 245 (320)
T 1gdh_A 190 -----------ATFHDSLDSLLSVSQFFSLNAPSTPETRY-----F-----F---NKATIKSLPQGAIVVNTARGDLVDN 245 (320)
T ss_dssp -----------CEECSSHHHHHHHCSEEEECCCCCTTTTT-----C-----B---SHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred -----------cEEcCCHHHHHhhCCEEEEeccCchHHHh-----h-----c---CHHHHhhCCCCcEEEECCCCcccCH
Confidence 23445788889999999999875432110 0 1 1345677899999999999766555
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 246 ~aL~~ 250 (320)
T 1gdh_A 246 ELVVA 250 (320)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54544
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.35 E-value=5.8e-07 Score=94.57 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=78.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||+++...+...+
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~----------- 205 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKP---------------------------FGCNLLYHDRLQMAPELEKE----------- 205 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG---------------------------GCCEEEEECSSCCCHHHHHH-----------
T ss_pred CCEEeEEEeCHHHHHHHHHHHH---------------------------CCCEEEEeCCCccCHHHHHh-----------
Confidence 3689999999999999999988 78999999997544333321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+.....++++.+++||+|++++|......+ .. -+...+.++++.++|+.|+.++-..+
T Consensus 206 --------~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vde~ 264 (351)
T 3jtm_A 206 --------TGAKFVEDLNEMLPKCDVIVINMPLTEKTRG-----MF--------NKELIGKLKKGVLIVNNARGAIMERQ 264 (351)
T ss_dssp --------HCCEECSCHHHHGGGCSEEEECSCCCTTTTT-----CB--------SHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred --------CCCeEcCCHHHHHhcCCEEEECCCCCHHHHH-----hh--------cHHHHhcCCCCCEEEECcCchhhCHH
Confidence 0234456788899999999999985322211 11 13456778999999999998887776
Q ss_pred HHHHH
Q psy11160 165 SIMNV 169 (598)
Q Consensus 165 ~~~~~ 169 (598)
.+...
T Consensus 265 aL~~a 269 (351)
T 3jtm_A 265 AVVDA 269 (351)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.2e-07 Score=92.49 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=74.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.||.++|..|+. .|+ +|+++|+++++++.... ++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~---------------------------~~~~~el~l~D~~~~k~~g~a~--------DL 45 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVAR---------------------------QDVAKEVVMVDIKDGMPQGKAL--------DM 45 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HTCSSEEEEECSSTTHHHHHHH--------HH
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCCCEEEEEeCchHHHHHHHH--------HH
Confidence 699999999999999999998 454 99999999988663221 01
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+..... ...++..+.++ +++++||+||++.+.|.++..++.+ -..+...+++..+.|.++. |+.++++- |-|..
T Consensus 46 ~~~~~~~~~~~~v~~~~~~-~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvd 122 (314)
T 3nep_X 46 RESSPIHGFDTRVTGTNDY-GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVV-ANPLD 122 (314)
T ss_dssp HHHHHHHTCCCEEEEESSS-GGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEEC-CSSHH
T ss_pred hccccccCCCcEEEECCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEec-CCchh
Confidence 1110000 11235545555 5899999999999998765432111 1223455666667777765 44554443 35666
Q ss_pred HHHHHH
Q psy11160 162 AAESIM 167 (598)
Q Consensus 162 ~~~~~~ 167 (598)
+.-.++
T Consensus 123 ~~t~~~ 128 (314)
T 3nep_X 123 VMTYVA 128 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.1e-07 Score=94.91 Aligned_cols=105 Identities=9% Similarity=0.053 Sum_probs=76.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||++.+.......
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~----------- 209 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKA---------------------------FGFNVLFYDPYLSDGVERAL----------- 209 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECTTSCTTHHHHH-----------
T ss_pred CCEEEEEeECHHHHHHHHHHHH---------------------------CCCEEEEECCCcchhhHhhc-----------
Confidence 3689999999999999999988 79999999986542111111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+.....++++.+++||+|++++|......+ ..+ +...+.++++.++|+.|+..+-..+
T Consensus 210 ---------g~~~~~~l~ell~~aDvV~l~~P~t~~t~~-----li~--------~~~l~~mk~gailIN~arg~~vd~~ 267 (347)
T 1mx3_A 210 ---------GLQRVSTLQDLLFHSDCVTLHCGLNEHNHH-----LIN--------DFTVKQMRQGAFLVNTARGGLVDEK 267 (347)
T ss_dssp ---------TCEECSSHHHHHHHCSEEEECCCCCTTCTT-----SBS--------HHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred ---------CCeecCCHHHHHhcCCEEEEcCCCCHHHHH-----HhH--------HHHHhcCCCCCEEEECCCChHHhHH
Confidence 123445788899999999999876432111 111 3455678999999999999887777
Q ss_pred HHHHH
Q psy11160 165 SIMNV 169 (598)
Q Consensus 165 ~~~~~ 169 (598)
.+...
T Consensus 268 aL~~a 272 (347)
T 1mx3_A 268 ALAQA 272 (347)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.8e-06 Score=87.94 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=80.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc---CCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS---NKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~---~~~~~~e~~ 82 (598)
|||+|||+|+||.+++..|+. ++...+++++|+++++++.... ...++.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~-------------------------~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~--- 52 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALAL-------------------------LGVAREVVLVDLDRKLAQAHAEDILHATPFA--- 52 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-------------------------TTCCSEEEEECSSHHHHHHHHHHHHTTGGGS---
T ss_pred CEEEEECCCHHHHHHHHHHHh-------------------------CCCCCEEEEEeCChhHHHHHHHHHHHhHhhc---
Confidence 699999999999999999998 1122599999999988774221 000100
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
...+++. ++ .+++++||+||++.+.|.++..++.+ ...+...+++..+.|.++. ++.++++- |-|.+
T Consensus 53 --------~~~~v~~-~~-~~a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~ 120 (310)
T 2xxj_A 53 --------HPVWVWA-GS-YGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVA-TNPVD 120 (310)
T ss_dssp --------CCCEEEE-CC-GGGGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-SSSHH
T ss_pred --------CCeEEEE-CC-HHHhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEe-cCchH
Confidence 0123443 34 56899999999999988765321000 0112456667777777775 55555553 88888
Q ss_pred HHHHHHH
Q psy11160 162 AAESIMN 168 (598)
Q Consensus 162 ~~~~~~~ 168 (598)
..-.++.
T Consensus 121 ~~t~~~~ 127 (310)
T 2xxj_A 121 VMTQVAY 127 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765554
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-07 Score=95.06 Aligned_cols=105 Identities=12% Similarity=0.171 Sum_probs=77.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||++++..+.+
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~---------------------------~G~~V~~~dr~~~~~~~~------------- 176 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASA---------------------------LGMHVIGVNTTGHPADHF------------- 176 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESSCCCCTTC-------------
T ss_pred CCeEEEECcCHHHHHHHHHHHh---------------------------CCCEEEEECCCcchhHhH-------------
Confidence 3689999999999999999998 799999999975432111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.......++++.+++||+|++++|......+ .. -+.....++++.++|+.|+.++-..+
T Consensus 177 --------~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~ 235 (324)
T 3evt_A 177 --------HETVAFTATADALATANFIVNALPLTPTTHH-----LF--------STELFQQTKQQPMLINIGRGPAVDTT 235 (324)
T ss_dssp --------SEEEEGGGCHHHHHHCSEEEECCCCCGGGTT-----CB--------SHHHHHTCCSCCEEEECSCGGGBCHH
T ss_pred --------hhccccCCHHHHHhhCCEEEEcCCCchHHHH-----hc--------CHHHHhcCCCCCEEEEcCCChhhhHH
Confidence 1122335678899999999999874322111 11 13456778999999999999888877
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+...|
T Consensus 236 aL~~aL 241 (324)
T 3evt_A 236 ALMTAL 241 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776633
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=90.20 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=74.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||+++++ +...+-
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~~---------------------------~G~~V~~~d~~~~~-~~~~~~---------- 183 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIANA---------------------------LGMNILLYDPYPNE-ERAKEV---------- 183 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCH-HHHHHT----------
T ss_pred CceEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEECCCCCh-hhHhhc----------
Confidence 3689999999999999999998 79999999998766 322211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+... .++++.+++||+|++++|......+ ..+ +...+.++++.++|+.|+..+-..+
T Consensus 184 ---------g~~~-~~l~ell~~aDvV~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lin~arg~~vd~~ 240 (307)
T 1wwk_A 184 ---------NGKF-VDLETLLKESDVVTIHVPLVESTYH-----LIN--------EERLKLMKKTAILINTSRGPVVDTN 240 (307)
T ss_dssp ---------TCEE-CCHHHHHHHCSEEEECCCCSTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred ---------Cccc-cCHHHHHhhCCEEEEecCCChHHhh-----hcC--------HHHHhcCCCCeEEEECCCCcccCHH
Confidence 1222 3677889999999999875432111 111 3455678999999999997765555
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 241 aL~~ 244 (307)
T 1wwk_A 241 ALVK 244 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.6e-07 Score=92.70 Aligned_cols=102 Identities=8% Similarity=0.130 Sum_probs=76.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. .|.+|++||+++...+... +
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~---------------------------~G~~V~~~dr~~~~~~~~~-g----------- 214 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARG---------------------------FGLAIHYHNRTRLSHALEE-G----------- 214 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHT---------------------------TTCEEEEECSSCCCHHHHT-T-----------
T ss_pred CEEEEEEeChhHHHHHHHHHH---------------------------CCCEEEEECCCCcchhhhc-C-----------
Confidence 689999999999999999988 7999999999753332211 1
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.....++++.+++||+|++++|......+ .. -+...+.++++.++|+.|..++-..+.
T Consensus 215 ---------~~~~~~l~ell~~sDvV~l~~Plt~~T~~-----li--------~~~~l~~mk~gailIN~aRG~~vde~a 272 (345)
T 4g2n_A 215 ---------AIYHDTLDSLLGASDIFLIAAPGRPELKG-----FL--------DHDRIAKIPEGAVVINISRGDLINDDA 272 (345)
T ss_dssp ---------CEECSSHHHHHHTCSEEEECSCCCGGGTT-----CB--------CHHHHHHSCTTEEEEECSCGGGBCHHH
T ss_pred ---------CeEeCCHHHHHhhCCEEEEecCCCHHHHH-----Hh--------CHHHHhhCCCCcEEEECCCCchhCHHH
Confidence 24456888899999999999985322111 11 134567789999999999988777666
Q ss_pred HHH
Q psy11160 166 IMN 168 (598)
Q Consensus 166 ~~~ 168 (598)
+..
T Consensus 273 L~~ 275 (345)
T 4g2n_A 273 LIE 275 (345)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=91.57 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=75.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||+++.+......|
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~g---------- 207 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQS---------------------------FGMKTIGYDPIISPEVSASFG---------- 207 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECSSSCHHHHHHTT----------
T ss_pred cCEEEEEeECHHHHHHHHHHHH---------------------------CCCEEEEECCCcchhhhhhcC----------
Confidence 3689999999999999999988 789999999986553211112
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
... .++++++++||+|++++|......+ ..+ +.+.+.++++.++|+.|+..+-..+
T Consensus 208 ----------~~~-~~l~ell~~aDvV~l~~P~t~~t~~-----li~--------~~~l~~mk~gailIN~arg~vvd~~ 263 (335)
T 2g76_A 208 ----------VQQ-LPLEEIWPLCDFITVHTPLLPSTTG-----LLN--------DNTFAQCKKGVRVVNCARGGIVDEG 263 (335)
T ss_dssp ----------CEE-CCHHHHGGGCSEEEECCCCCTTTTT-----SBC--------HHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred ----------cee-CCHHHHHhcCCEEEEecCCCHHHHH-----hhC--------HHHHhhCCCCcEEEECCCccccCHH
Confidence 222 3678889999999999876532211 111 3566788999999999998776655
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 264 aL~~ 267 (335)
T 2g76_A 264 ALLR 267 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=9e-07 Score=91.63 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=73.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||..++..|++. .|+ +|.+||+++++.+.+.+...
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~--------------------------~g~~~V~v~dr~~~~~~~l~~~~~------- 181 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQ--------------------------FSFKEVRIWNRTKENAEKFADTVQ------- 181 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--------------------------CCCSEEEEECSSHHHHHHHHHHSS-------
T ss_pred CcEEEEECCcHHHHHHHHHHHHh--------------------------CCCcEEEEEcCCHHHHHHHHHHhh-------
Confidence 47899999999999999999871 265 99999999999988764210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
..+..+.++++++++||+||+|+|... +- +. . +.++++++|+..||..|..
T Consensus 182 ---------~~~~~~~~~~e~v~~aDiVi~atp~~~----------~v---~~----~--~~l~~g~~vi~~g~~~p~~ 232 (312)
T 2i99_A 182 ---------GEVRVCSSVQEAVAGADVIITVTLATE----------PI---LF----G--EWVKPGAHINAVGASRPDW 232 (312)
T ss_dssp ---------SCCEECSSHHHHHTTCSEEEECCCCSS----------CC---BC----G--GGSCTTCEEEECCCCSTTC
T ss_pred ---------CCeEEeCCHHHHHhcCCEEEEEeCCCC----------cc---cC----H--HHcCCCcEEEeCCCCCCCc
Confidence 024567788889999999999986421 00 10 1 4678999999998888865
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-06 Score=87.47 Aligned_cols=126 Identities=19% Similarity=0.216 Sum_probs=81.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.++|..|+.+ +.--++.++|+++++.+-... ++.+
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~-------------------------~~~~el~L~Di~~~~~~G~a~--------DL~h 47 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN-------------------------LDVDEIALVDIAEDLAVGEAM--------DLAH 47 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-------------------------SCCSEEEEECSSHHHHHHHHH--------HHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhC-------------------------CCCCEEEEEeCCCCcchhhhh--------hhhc
Confidence 6999999999999999999871 122489999999877653211 0111
Q ss_pred HHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 86 VVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
..... ....+..++|++ ++++||+|||+...|.++..++.+ -..+.+.+++..+.|.++.++..++|+ |-|..+.
T Consensus 48 ~~~~~~~~~~i~~~~d~~-~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvv--sNPvd~~ 124 (294)
T 2x0j_A 48 AAAGIDKYPKIVGGADYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVV--TNPMDVM 124 (294)
T ss_dssp HHGGGTCCCEEEEESCGG-GGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEEC--SSSHHHH
T ss_pred ccccCCCCCeEecCCCHH-HhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEe--cCcchhh
Confidence 00000 113456677885 799999999999988877543221 122455667777778777665555554 5566655
Q ss_pred HHHH
Q psy11160 164 ESIM 167 (598)
Q Consensus 164 ~~~~ 167 (598)
-.++
T Consensus 125 t~i~ 128 (294)
T 2x0j_A 125 TYIM 128 (294)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4444
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.9e-07 Score=97.89 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=74.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..|.. .|++|++||++.........|
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~~a~~~g---------- 184 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAA---------------------------FGAYVVAYDPYVSPARAAQLG---------- 184 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECTTSCHHHHHHHT----------
T ss_pred CCEEEEEeeCHHHHHHHHHHHh---------------------------CCCEEEEECCCCChhHHHhcC----------
Confidence 3789999999999999999998 789999999976432211112
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.... ++++++++||+|++|+|..... +..+ +.+.+.+++++++++.|+..+-..
T Consensus 185 ----------~~~~-~l~e~~~~aDvV~l~~P~~~~t--------------~~~i~~~~~~~~k~g~ilin~arg~iv~~ 239 (529)
T 1ygy_A 185 ----------IELL-SLDDLLARADFISVHLPKTPET--------------AGLIDKEALAKTKPGVIIVNAARGGLVDE 239 (529)
T ss_dssp ----------CEEC-CHHHHHHHCSEEEECCCCSTTT--------------TTCBCHHHHTTSCTTEEEEECSCTTSBCH
T ss_pred ----------cEEc-CHHHHHhcCCEEEECCCCchHH--------------HHHhCHHHHhCCCCCCEEEECCCCchhhH
Confidence 2333 6788899999999998764221 1111 235677899999999999888776
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 240 ~aL~~ 244 (529)
T 1ygy_A 240 AALAD 244 (529)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=92.93 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=76.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||..+|..+.. .|.+ |++||+++...+...+
T Consensus 164 g~tvgIIG~G~IG~~vA~~l~~---------------------------~G~~~V~~~d~~~~~~~~~~~---------- 206 (364)
T 2j6i_A 164 GKTIATIGAGRIGYRVLERLVP---------------------------FNPKELLYYDYQALPKDAEEK---------- 206 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG---------------------------GCCSEEEEECSSCCCHHHHHH----------
T ss_pred CCEEEEECcCHHHHHHHHHHHh---------------------------CCCcEEEEECCCccchhHHHh----------
Confidence 3689999999999999999988 6887 9999998654443322
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.+.....++++.+++||+|++++|......+ ..+ +...+.++++.++|+.|+..+-..
T Consensus 207 ---------~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~-----li~--------~~~l~~mk~ga~lIn~arG~~vd~ 264 (364)
T 2j6i_A 207 ---------VGARRVENIEELVAQADIVTVNAPLHAGTKG-----LIN--------KELLSKFKKGAWLVNTARGAICVA 264 (364)
T ss_dssp ---------TTEEECSSHHHHHHTCSEEEECCCCSTTTTT-----CBC--------HHHHTTSCTTEEEEECSCGGGBCH
T ss_pred ---------cCcEecCCHHHHHhcCCEEEECCCCChHHHH-----HhC--------HHHHhhCCCCCEEEECCCCchhCH
Confidence 1234445788889999999999876432211 111 345577899999999999877666
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 265 ~aL~~ 269 (364)
T 2j6i_A 265 EDVAA 269 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-06 Score=93.97 Aligned_cols=105 Identities=10% Similarity=0.119 Sum_probs=75.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||+++...+....
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a---------------------------~G~~V~~~d~~~~~~~~~~~----------- 232 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAP---------------------------FDVHLHYTDRHRLPESVEKE----------- 232 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG---------------------------GTCEEEEECSSCCCHHHHHH-----------
T ss_pred CCEEEEEeECHHHHHHHHHHHh---------------------------CCCEEEEEcCCccchhhHhh-----------
Confidence 3689999999999999999988 68999999997543332221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+.....++++.+++||+|++++|......+ ..+ +...+.++++.++|+.|+..+-..+
T Consensus 233 --------~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~ 291 (393)
T 2nac_A 233 --------LNLTWHATREDMYPVCDVVTLNCPLHPETEH-----MIN--------DETLKLFKRGAYIVNTARGKLCDRD 291 (393)
T ss_dssp --------HTCEECSSHHHHGGGCSEEEECSCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred --------cCceecCCHHHHHhcCCEEEEecCCchHHHH-----Hhh--------HHHHhhCCCCCEEEECCCchHhhHH
Confidence 0133445788889999999999875322111 111 3456778999999999998776655
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 292 aL~~ 295 (393)
T 2nac_A 292 AVAR 295 (393)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=91.84 Aligned_cols=104 Identities=8% Similarity=0.104 Sum_probs=75.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||+++...+....
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~----------- 186 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQG---------------------------WGATLQYHEAKALDTQTEQR----------- 186 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTT---------------------------SCCEEEEECSSCCCHHHHHH-----------
T ss_pred CCEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEECCCCCcHhHHHh-----------
Confidence 3689999999999999999887 78999999998633322211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+... .++++++++||+|++++|......+ .. -+...+.++++.++|+.|+..+-..+
T Consensus 187 --------~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~-----li--------~~~~l~~mk~gailIN~arg~~vd~~ 244 (330)
T 4e5n_A 187 --------LGLRQ-VACSELFASSDFILLALPLNADTLH-----LV--------NAELLALVRPGALLVNPCRGSVVDEA 244 (330)
T ss_dssp --------HTEEE-CCHHHHHHHCSEEEECCCCSTTTTT-----CB--------CHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred --------cCcee-CCHHHHHhhCCEEEEcCCCCHHHHH-----Hh--------CHHHHhhCCCCcEEEECCCCchhCHH
Confidence 01333 3688899999999999985332211 11 13567788999999999998877766
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 245 aL~~ 248 (330)
T 4e5n_A 245 AVLA 248 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-07 Score=95.28 Aligned_cols=104 Identities=9% Similarity=0.145 Sum_probs=75.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||++++..+. +
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~---------------------------~G~~V~~~dr~~~~~~~------------~- 178 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQA---------------------------WGFPLRCWSRSRKSWPG------------V- 178 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEEESSCCCCTT------------C-
T ss_pred CCEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEEcCCchhhhh------------h-
Confidence 4789999999999999999988 79999999997543210 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.......++++.+++||+|++++|......+ .. -+...+.++++.++|+.|+.++-..+
T Consensus 179 --------~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~ 237 (315)
T 3pp8_A 179 --------ESYVGREELRAFLNQTRVLINLLPNTAQTVG-----II--------NSELLDQLPDGAYVLNLARGVHVQEA 237 (315)
T ss_dssp --------EEEESHHHHHHHHHTCSEEEECCCCCGGGTT-----CB--------SHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred --------hhhcccCCHHHHHhhCCEEEEecCCchhhhh-----hc--------cHHHHhhCCCCCEEEECCCChhhhHH
Confidence 0011124678889999999999874322111 11 13456778999999999998887776
Q ss_pred HHHHH
Q psy11160 165 SIMNV 169 (598)
Q Consensus 165 ~~~~~ 169 (598)
.+...
T Consensus 238 aL~~a 242 (315)
T 3pp8_A 238 DLLAA 242 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=89.57 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=76.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. .|.+|++||++.........|
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~---------------------------fG~~V~~~d~~~~~~~~~~~g---------- 218 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSG---------------------------FRARIRVFDPWLPRSMLEENG---------- 218 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTT---------------------------SCCEEEEECSSSCHHHHHHTT----------
T ss_pred CCEEEEecCCcccHHHHHhhhh---------------------------CCCEEEEECCCCCHHHHhhcC----------
Confidence 3689999999999999999877 789999999975332222222
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.. ..++++.+++||+|++++|...... .+. -+...+.++++.++|+.|+.++-..+
T Consensus 219 ----------~~-~~~l~ell~~aDvV~l~~Plt~~T~-----------~li--~~~~l~~mk~gailIN~aRG~~vde~ 274 (365)
T 4hy3_A 219 ----------VE-PASLEDVLTKSDFIFVVAAVTSENK-----------RFL--GAEAFSSMRRGAAFILLSRADVVDFD 274 (365)
T ss_dssp ----------CE-ECCHHHHHHSCSEEEECSCSSCC--------------CC--CHHHHHTSCTTCEEEECSCGGGSCHH
T ss_pred ----------ee-eCCHHHHHhcCCEEEEcCcCCHHHH-----------hhc--CHHHHhcCCCCcEEEECcCCchhCHH
Confidence 22 2478889999999999987543211 111 14566789999999999999887776
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+...|
T Consensus 275 aL~~aL 280 (365)
T 4hy3_A 275 ALMAAV 280 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666533
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.4e-07 Score=94.46 Aligned_cols=105 Identities=11% Similarity=0.112 Sum_probs=75.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||+++...+.+
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~---------------------------~G~~V~~~dr~~~~~~~~------------- 179 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKH---------------------------FGMKVLGVSRSGRERAGF------------- 179 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCCCTTC-------------
T ss_pred cceEEEEEECHHHHHHHHHHHh---------------------------CCCEEEEEcCChHHhhhh-------------
Confidence 3689999999999999999998 799999999975221100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.......++++++++||+|++++|......+ ..+ +.....++++.++|+.|+..+-..+
T Consensus 180 --------~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~ 238 (324)
T 3hg7_A 180 --------DQVYQLPALNKMLAQADVIVSVLPATRETHH-----LFT--------ASRFEHCKPGAILFNVGRGNAINEG 238 (324)
T ss_dssp --------SEEECGGGHHHHHHTCSEEEECCCCCSSSTT-----SBC--------TTTTTCSCTTCEEEECSCGGGBCHH
T ss_pred --------hcccccCCHHHHHhhCCEEEEeCCCCHHHHH-----HhH--------HHHHhcCCCCcEEEECCCchhhCHH
Confidence 1112235788899999999999985332211 111 2334568899999999999887777
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+...|
T Consensus 239 aL~~aL 244 (324)
T 3hg7_A 239 DLLTAL 244 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766633
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.2e-06 Score=89.84 Aligned_cols=103 Identities=11% Similarity=0.180 Sum_probs=76.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|.+|++||+++.. ...
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~--~~~------------ 186 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSA---------------------------MGAKVIAYDVAYNP--EFE------------ 186 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCG--GGT------------
T ss_pred CCeEEEEecCHHHHHHHHHHhh---------------------------CCCEEEEECCChhh--hhh------------
Confidence 3689999999999999999998 79999999998643 111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
...... ++++++++||+|++++|......+ ..+ +.....++++.++|+.|+..+-..+
T Consensus 187 --------~~~~~~-~l~ell~~aDvV~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRg~~vd~~ 244 (343)
T 2yq5_A 187 --------PFLTYT-DFDTVLKEADIVSLHTPLFPSTEN-----MIG--------EKQLKEMKKSAYLINCARGELVDTG 244 (343)
T ss_dssp --------TTCEEC-CHHHHHHHCSEEEECCCCCTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred --------cccccc-CHHHHHhcCCEEEEcCCCCHHHHH-----Hhh--------HHHHhhCCCCcEEEECCCChhhhHH
Confidence 112233 788899999999999985332211 111 3456778999999999999887777
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+...|
T Consensus 245 aL~~aL 250 (343)
T 2yq5_A 245 ALIKAL 250 (343)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=8e-07 Score=91.74 Aligned_cols=100 Identities=13% Similarity=0.234 Sum_probs=73.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||++++ +. +.
T Consensus 124 g~~vgIIG~G~IG~~~A~~l~~---------------------------~G~~V~~~dr~~~--~~---~~--------- 162 (303)
T 1qp8_A 124 GEKVAVLGLGEIGTRVGKILAA---------------------------LGAQVRGFSRTPK--EG---PW--------- 162 (303)
T ss_dssp TCEEEEESCSTHHHHHHHHHHH---------------------------TTCEEEEECSSCC--CS---SS---------
T ss_pred CCEEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEECCCcc--cc---Cc---------
Confidence 3689999999999999999998 7999999999764 11 10
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
....++++.+++||+|++++|......+ +. -+.+.+.++++.++|+.|+..+-..+
T Consensus 163 -----------~~~~~l~ell~~aDvV~l~~P~~~~t~~-----------~i--~~~~l~~mk~gailin~srg~~vd~~ 218 (303)
T 1qp8_A 163 -----------RFTNSLEEALREARAAVCALPLNKHTRG-----------LV--KYQHLALMAEDAVFVNVGRAEVLDRD 218 (303)
T ss_dssp -----------CCBSCSHHHHTTCSEEEECCCCSTTTTT-----------CB--CHHHHTTSCTTCEEEECSCGGGBCHH
T ss_pred -----------ccCCCHHHHHhhCCEEEEeCcCchHHHH-----------Hh--CHHHHhhCCCCCEEEECCCCcccCHH
Confidence 1124567789999999999876432211 11 13566789999999999998776666
Q ss_pred HHHHH
Q psy11160 165 SIMNV 169 (598)
Q Consensus 165 ~~~~~ 169 (598)
.+...
T Consensus 219 aL~~a 223 (303)
T 1qp8_A 219 GVLRI 223 (303)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.2e-06 Score=89.57 Aligned_cols=101 Identities=11% Similarity=0.174 Sum_probs=74.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||..+|..+.. .|++|++||+++++. +.+.
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~---------------------------~G~~V~~~d~~~~~~--~~~~----------- 186 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEG---------------------------FGAKVITYDIFRNPE--LEKK----------- 186 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCHH--HHHT-----------
T ss_pred CEEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEECCCcchh--HHhh-----------
Confidence 689999999999999999998 789999999987654 2221
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.....++++.+++||+|++++|...... .+. -+...+.++++.++|+.|+..+-..+.
T Consensus 187 ---------~~~~~~l~ell~~aDvV~l~~p~~~~t~-----------~li--~~~~l~~mk~ga~lIn~arg~~vd~~a 244 (333)
T 1j4a_A 187 ---------GYYVDSLDDLYKQADVISLHVPDVPANV-----------HMI--NDESIAKMKQDVVIVNVSRGPLVDTDA 244 (333)
T ss_dssp ---------TCBCSCHHHHHHHCSEEEECSCCCGGGT-----------TCB--SHHHHHHSCTTEEEEECSCGGGBCHHH
T ss_pred ---------CeecCCHHHHHhhCCEEEEcCCCcHHHH-----------HHH--hHHHHhhCCCCcEEEECCCCcccCHHH
Confidence 0122367788999999999987543211 110 034556789999999999987766666
Q ss_pred HHH
Q psy11160 166 IMN 168 (598)
Q Consensus 166 ~~~ 168 (598)
+..
T Consensus 245 L~~ 247 (333)
T 1j4a_A 245 VIR 247 (333)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-06 Score=87.21 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=71.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.||..+|..++. .|+ +|+++|++++......
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~---------------------------~g~~~ev~L~Di~~~~~g~a~---------- 56 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISA---------------------------KGIADRLVLLDLSEGTKGATM---------- 56 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------HTCCSEEEEECCC-----CHH----------
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------cCCCCEEEEEcCCcchHHHHH----------
Confidence 5799999999999999999998 566 9999999985211110
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
++.. ....+++.++|+ +++++||+||++++.+ .+..++.+ ...+...++++++.|.++. ++.++++ -|-|..
T Consensus 57 --dl~~-~~~~~i~~t~d~-~~l~~aD~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~sNP~~ 129 (303)
T 2i6t_A 57 --DLEI-FNLPNVEISKDL-SASAHSKVVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLV-ASQPVE 129 (303)
T ss_dssp --HHHH-HTCTTEEEESCG-GGGTTCSEEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEE-CSSSHH
T ss_pred --HHhh-hcCCCeEEeCCH-HHHCCCCEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-cCChHH
Confidence 1111 111357788898 6899999999998665 22111000 1223445677778888877 5665544 233554
Q ss_pred HH
Q psy11160 162 AA 163 (598)
Q Consensus 162 ~~ 163 (598)
..
T Consensus 130 ~~ 131 (303)
T 2i6t_A 130 IM 131 (303)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-06 Score=72.13 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=54.1
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++++|+|+|+|++|..++..|.. .| ++|+++|+++++.+.+.........
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~---------------------------~g~~~v~~~~r~~~~~~~~~~~~~~~~~-- 54 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKT---------------------------SSNYSVTVADHDLAALAVLNRMGVATKQ-- 54 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHH---------------------------CSSEEEEEEESCHHHHHHHHTTTCEEEE--
T ss_pred CcCeEEEECCCHHHHHHHHHHHh---------------------------CCCceEEEEeCCHHHHHHHHhCCCcEEE--
Confidence 45799999999999999999999 78 9999999999999887732111100
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..+.-..+..++++++|+||.++|
T Consensus 55 ----------~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 55 ----------VDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp ----------CCTTCHHHHHHHTTTCSEEEECSC
T ss_pred ----------ecCCCHHHHHHHHcCCCEEEECCC
Confidence 001111234456789999999975
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-06 Score=92.82 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=74.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||+++... .
T Consensus 145 gktlGiIGlG~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~----~----------- 182 (404)
T 1sc6_A 145 GKKLGIIGYGHIGTQLGILAES---------------------------LGMYVYFYDIENKLP----L----------- 182 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCCC----C-----------
T ss_pred CCEEEEEeECHHHHHHHHHHHH---------------------------CCCEEEEEcCCchhc----c-----------
Confidence 3689999999999999999988 799999999864210 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++.....++++.+++||+|++++|......+ ..+ +.....++++.++|+.|+..+-..+
T Consensus 183 --------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~-----li~--------~~~l~~mk~ga~lIN~aRg~~vd~~ 241 (404)
T 1sc6_A 183 --------GNATQVQHLSDLLNMSDVVSLHVPENPSTKN-----MMG--------AKEISLMKPGSLLINASRGTVVDIP 241 (404)
T ss_dssp --------TTCEECSCHHHHHHHCSEEEECCCSSTTTTT-----CBC--------HHHHHHSCTTEEEEECSCSSSBCHH
T ss_pred --------CCceecCCHHHHHhcCCEEEEccCCChHHHH-----Hhh--------HHHHhhcCCCeEEEECCCChHHhHH
Confidence 1234456788899999999999876432211 111 3455678999999999998876666
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 242 aL~~ 245 (404)
T 1sc6_A 242 ALAD 245 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-06 Score=91.79 Aligned_cols=100 Identities=10% Similarity=0.146 Sum_probs=73.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||..+|..+.. .|++|++||+++.. +.
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~---------------------------~G~~V~~yd~~~~~---------~~------- 193 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAES---------------------------LGMTVRYYDTSDKL---------QY------- 193 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECTTCCC---------CB-------
T ss_pred CEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEECCcchh---------cc-------
Confidence 689999999999999999988 79999999986210 00
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.......++++.+++||+|++++|......+ .. -+.....++++.++|+.|+..+-..+.
T Consensus 194 -------~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~-----li--------~~~~l~~mk~gailIN~aRG~vvd~~a 253 (416)
T 3k5p_A 194 -------GNVKPAASLDELLKTSDVVSLHVPSSKSTSK-----LI--------TEAKLRKMKKGAFLINNARGSDVDLEA 253 (416)
T ss_dssp -------TTBEECSSHHHHHHHCSEEEECCCC-----C-----CB--------CHHHHHHSCTTEEEEECSCTTSBCHHH
T ss_pred -------cCcEecCCHHHHHhhCCEEEEeCCCCHHHhh-----hc--------CHHHHhhCCCCcEEEECCCChhhhHHH
Confidence 1234457888999999999999976432111 11 134567789999999999998877766
Q ss_pred HHH
Q psy11160 166 IMN 168 (598)
Q Consensus 166 ~~~ 168 (598)
+..
T Consensus 254 L~~ 256 (416)
T 3k5p_A 254 LAK 256 (416)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-06 Score=87.81 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=62.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.|||+|||+|.||+.+|..|+. |++|++|++++++++.+++....+..++..
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~~----------------------------g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~ 53 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLSL----------------------------YHDVTVVTRRQEQAAAIQSEGIRLYKGGEE 53 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT----------------------------TSEEEEECSCHHHHHHHHHHCEEEEETTEE
T ss_pred CCEEEEECCCHHHHHHHHHHhc----------------------------CCceEEEECCHHHHHHHHhCCceEecCCCe
Confidence 4799999999999999999884 789999999999988887532222111110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCc
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNK 150 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 150 (598)
.......+ .++...+|+||+||+.. .+.++++.+.+. .+++
T Consensus 54 ------~~~~~~~~---~~~~~~~D~vilavK~~---------------~~~~~l~~l~~~-~~~~ 94 (307)
T 3ego_A 54 ------FRADCSAD---TSINSDFDLLVVTVKQH---------------QLQSVFSSLERI-GKTN 94 (307)
T ss_dssp ------EEECCEEE---SSCCSCCSEEEECCCGG---------------GHHHHHHHTTSS-CCCE
T ss_pred ------eccccccc---ccccCCCCEEEEEeCHH---------------HHHHHHHHhhcC-CCCe
Confidence 00111221 12467899999998643 256677777654 4555
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-05 Score=71.52 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=39.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+++|.|+|+|.+|..+|..|++ .|++|+++|+++++++.+.+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~---------------------------~g~~V~~id~~~~~~~~~~~ 47 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA---------------------------AGKKVLAVDKSKEKIELLED 47 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEECCHHHHHHHHH
Confidence 5689999999999999999999 89999999999999998875
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-05 Score=74.22 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=37.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.++|.|+|+|.+|..+|..|.. .|++|+++|+++++++.+.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~---------------------------~g~~V~vid~~~~~~~~~~ 59 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASS---------------------------SGHSVVVVDKNEYAFHRLN 59 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCGGGGGGSC
T ss_pred CCcEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHH
Confidence 4789999999999999999999 8999999999999887654
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=82.88 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=58.0
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
.+++||+|||+|.||..++..|... .+++|+ ++|+++++.+.+.+..
T Consensus 2 ~~~~rvgiiG~G~~g~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~~a~~~------ 49 (344)
T 3euw_A 2 SLTLRIALFGAGRIGHVHAANIAAN--------------------------PDLELVVIADPFIEGAQRLAEAN------ 49 (344)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHC--------------------------TTEEEEEEECSSHHHHHHHHHTT------
T ss_pred CCceEEEEECCcHHHHHHHHHHHhC--------------------------CCcEEEEEECCCHHHHHHHHHHc------
Confidence 3457999999999999999999871 467876 7899999988876421
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+....+|+++.++ ++|+|++|+|+..
T Consensus 50 ------------g~~~~~~~~~~l~~~~~D~V~i~tp~~~ 77 (344)
T 3euw_A 50 ------------GAEAVASPDEVFARDDIDGIVIGSPTST 77 (344)
T ss_dssp ------------TCEEESSHHHHTTCSCCCEEEECSCGGG
T ss_pred ------------CCceeCCHHHHhcCCCCCEEEEeCCchh
Confidence 2456789998888 8999999987653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-05 Score=70.64 Aligned_cols=73 Identities=15% Similarity=0.319 Sum_probs=53.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCC-C-CCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPI-Y-EPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~-~-e~~ 82 (598)
..+|.|+|+|.+|..+|..|.. .|++|+++|+++++++.+.+...+. . +..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~---------------------------~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~ 59 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA---------------------------SDIPLVVIETSRTRVDELRERGVRAVLGNAA 59 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESCHHHHHHHHHTTCEEEESCTT
T ss_pred CCCEEEECcCHHHHHHHHHHHH---------------------------CCCCEEEEECCHHHHHHHHHcCCCEEECCCC
Confidence 4689999999999999999999 8999999999999999887522211 1 111
Q ss_pred hHHHHhhhcCCceEEecCHHH-HhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKS-AIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~adviii~v~tp 118 (598)
-++. +.+ .+.++|++|+++|.+
T Consensus 60 ~~~~--------------l~~a~i~~ad~vi~~~~~~ 82 (140)
T 3fwz_A 60 NEEI--------------MQLAHLECAKWLILTIPNG 82 (140)
T ss_dssp SHHH--------------HHHTTGGGCSEEEECCSCH
T ss_pred CHHH--------------HHhcCcccCCEEEEECCCh
Confidence 1111 111 257899999997653
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-06 Score=77.21 Aligned_cols=71 Identities=18% Similarity=0.374 Sum_probs=57.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..++..|+. .|++|+++|+++++.+.+.+..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~---------------------------~g~~v~v~~r~~~~~~~~a~~~--------- 64 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSY---------------------------PQYKVTVAGRNIDHVRAFAEKY--------- 64 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCT---------------------------TTCEEEEEESCHHHHHHHHHHH---------
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEcCCHHHHHHHHHHh---------
Confidence 4689999999999999998888 7888999999999988765320
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
........+..++++++|+||.|+|.+
T Consensus 65 -------~~~~~~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 65 -------EYEYVLINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp -------TCEEEECSCHHHHHHTCSEEEECSCCS
T ss_pred -------CCceEeecCHHHHhcCCCEEEEeCCCC
Confidence 012345567888899999999998765
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.8e-06 Score=88.76 Aligned_cols=100 Identities=9% Similarity=0.148 Sum_probs=73.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||..+|..+.. .|++|++||+++... + ..
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~---------------------------~G~~V~~~d~~~~~~--~-~~----------- 184 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKG---------------------------FGAKVIAYDPYPMKG--D-HP----------- 184 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCSS--C-CT-----------
T ss_pred CEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCCcchh--h-Hh-----------
Confidence 689999999999999999998 799999999975321 0 00
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.... .++++.+++||+|++++|......+ ..+ +...+.++++.++|+.|+..+-..+.
T Consensus 185 --------~~~~-~~l~ell~~aDvV~~~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~srg~~vd~~a 242 (333)
T 1dxy_A 185 --------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTH-----IIN--------EAAFNLMKPGAIVINTARPNLIDTQA 242 (333)
T ss_dssp --------TCEE-CCHHHHHHHCSEEEECCCCCGGGTT-----SBC--------HHHHHHSCTTEEEEECSCTTSBCHHH
T ss_pred --------cccc-CCHHHHHhcCCEEEEcCCCchhHHH-----HhC--------HHHHhhCCCCcEEEECCCCcccCHHH
Confidence 0122 3678889999999999876432211 111 34567789999999999988777666
Q ss_pred HHH
Q psy11160 166 IMN 168 (598)
Q Consensus 166 ~~~ 168 (598)
+..
T Consensus 243 L~~ 245 (333)
T 1dxy_A 243 MLS 245 (333)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.3e-06 Score=88.69 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=75.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||++.+... .+
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a---------------------------~G~~V~~~d~~~~~~~---~~---------- 158 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEA---------------------------LGIRTLLCDPPRAARG---DE---------- 158 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECHHHHHTT---CC----------
T ss_pred CCEEEEEeECHHHHHHHHHHHH---------------------------CCCEEEEECCChHHhc---cC----------
Confidence 3689999999999999999998 7999999997543211 00
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCC----CCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTK----TFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
. ...++++++++||+|++++|.... ..+ ..+ +.....++++.++|+.|+.++
T Consensus 159 ----------~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~-----li~--------~~~l~~mk~gailIN~aRG~v 214 (381)
T 3oet_A 159 ----------G-DFRTLDELVQEADVLTFHTPLYKDGPYKTLH-----LAD--------ETLIRRLKPGAILINACRGPV 214 (381)
T ss_dssp ----------S-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTT-----SBC--------HHHHHHSCTTEEEEECSCGGG
T ss_pred ----------c-ccCCHHHHHhhCCEEEEcCcCCccccccchh-----hcC--------HHHHhcCCCCcEEEECCCCcc
Confidence 0 124678899999999999875422 111 111 345677899999999999988
Q ss_pred HHHHHHHHHH
Q psy11160 161 RAAESIMNVL 170 (598)
Q Consensus 161 ~~~~~~~~~l 170 (598)
-..+.+...|
T Consensus 215 vde~aL~~aL 224 (381)
T 3oet_A 215 VDNAALLARL 224 (381)
T ss_dssp BCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 7777776533
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.05 E-value=4.9e-06 Score=84.43 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=70.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..|++ .|++|+++|+++++.+.+.+..
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~---------------------------~g~~V~v~~r~~~~~~~l~~~~--------- 172 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVK---------------------------EGAKVFLWNRTKEKAIKLAQKF--------- 172 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHH---------------------------HTCEEEEECSSHHHHHHHTTTS---------
T ss_pred CCEEEEECchHHHHHHHHHHHH---------------------------cCCEEEEEECCHHHHHHHHHHc---------
Confidence 3689999999999999999999 6789999999999988876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
+....+++.++++++|+||.|+|.+..++. .. .+ . .+.++++++|++.++
T Consensus 173 ---------g~~~~~~~~~~~~~aDiVi~atp~~~~~~~------~~--~i----~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 173 ---------PLEVVNSPEEVIDKVQVIVNTTSVGLKDED------PE--IF----N--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp ---------CEEECSCGGGTGGGCSEEEECSSTTSSTTC------CC--SS----C--GGGCCTTSEEEESSS
T ss_pred ---------CCeeehhHHhhhcCCCEEEEeCCCCCCCCC------CC--CC----C--HHHcCCCCEEEEcCC
Confidence 234445677788999999999887642110 00 01 0 245678999998887
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.5e-06 Score=80.98 Aligned_cols=85 Identities=12% Similarity=0.145 Sum_probs=63.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|.||..++..|.+ .|++| .+||+++ +.+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~---------------------------~g~~lv~v~d~~~-~~~--------------- 37 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLER---------------------------NGFEIAAILDVRG-EHE--------------- 37 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEECSSC-CCT---------------
T ss_pred CEEEEECCCHHHHHHHHHHhc---------------------------CCCEEEEEEecCc-chh---------------
Confidence 589999999999999999988 88997 6899873 110
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
. ..+|+++.+ .++|+|++|+|... .. +.+...+..|+.|+.+||..+..
T Consensus 38 ---------~--~~~~~~~l~~~~~DvVv~~~~~~~---------------~~---~~~~~~l~~G~~vv~~~~~~~~~ 87 (236)
T 2dc1_A 38 ---------K--MVRGIDEFLQREMDVAVEAASQQA---------------VK---DYAEKILKAGIDLIVLSTGAFAD 87 (236)
T ss_dssp ---------T--EESSHHHHTTSCCSEEEECSCHHH---------------HH---HHHHHHHHTTCEEEESCGGGGGS
T ss_pred ---------h--hcCCHHHHhcCCCCEEEECCCHHH---------------HH---HHHHHHHHCCCcEEEECcccCCh
Confidence 0 456788777 68999999976431 12 22334566889999999876543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-05 Score=84.10 Aligned_cols=73 Identities=7% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+++||+|||+|.||..++..|.+ ...+++++ ++|+++++.+.+.+.
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~-------------------------~~~~~~lvav~d~~~~~~~~~~~~-------- 58 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEK-------------------------HADRAELIDVCDIDPAALKAAVER-------- 58 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHH-------------------------TTTTEEEEEEECSSHHHHHHHHHH--------
T ss_pred CcceEEEEcCcHHHHHHHHHHHh-------------------------CCCCeEEEEEEcCCHHHHHHHHHH--------
Confidence 35799999999999999999988 11367765 889999998877642
Q ss_pred hHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
-++...+|+++.++ ++|+|+||+|+..
T Consensus 59 ----------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 87 (354)
T 3q2i_A 59 ----------TGARGHASLTDMLAQTDADIVILTTPSGL 87 (354)
T ss_dssp ----------HCCEEESCHHHHHHHCCCSEEEECSCGGG
T ss_pred ----------cCCceeCCHHHHhcCCCCCEEEECCCcHH
Confidence 12467789998887 7899999987653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=73.83 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=38.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~~ 73 (598)
.++|.|+|+|.||..+|..|.+ . |++|+++|+++++++.+.+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~---------------------------~~g~~V~vid~~~~~~~~~~~ 81 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRA---------------------------RYGKISLGIEIREEAAQQHRS 81 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHH---------------------------HHCSCEEEEESCHHHHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHh---------------------------ccCCeEEEEECCHHHHHHHHH
Confidence 3589999999999999999999 8 9999999999999988774
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.9e-06 Score=87.18 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=74.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..+.. .|++|++||++.+.. ..+
T Consensus 116 g~tvGIIGlG~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~---~~g---------- 155 (380)
T 2o4c_A 116 ERTYGVVGAGQVGGRLVEVLRG---------------------------LGWKVLVCDPPRQAR---EPD---------- 155 (380)
T ss_dssp GCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECHHHHHH---STT----------
T ss_pred CCEEEEEeCCHHHHHHHHHHHH---------------------------CCCEEEEEcCChhhh---ccC----------
Confidence 3689999999999999999998 799999999866432 111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.. ..++++.+++||+|++++|.... + +. + ...+. -+.+.+.++++.++|+.|+..+-..+
T Consensus 156 ----------~~-~~~l~ell~~aDvV~l~~Plt~~--g--~~--~-T~~li--~~~~l~~mk~gailIN~sRG~vvd~~ 215 (380)
T 2o4c_A 156 ----------GE-FVSLERLLAEADVISLHTPLNRD--G--EH--P-TRHLL--DEPRLAALRPGTWLVNASRGAVVDNQ 215 (380)
T ss_dssp ----------SC-CCCHHHHHHHCSEEEECCCCCSS--S--SS--C-CTTSB--CHHHHHTSCTTEEEEECSCGGGBCHH
T ss_pred ----------cc-cCCHHHHHHhCCEEEEeccCccc--c--cc--c-hhhhc--CHHHHhhCCCCcEEEECCCCcccCHH
Confidence 01 24677889999999999875432 0 00 0 00111 13566789999999999998877766
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 216 aL~~ 219 (380)
T 2o4c_A 216 ALRR 219 (380)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.7e-06 Score=85.82 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=73.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||+++++. +. .
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~---------------------------~G~~V~~~d~~~~~~--~~-~---------- 185 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHG---------------------------MGATVIGEDVFEIKG--IE-D---------- 185 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCCS--CT-T----------
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCCccHH--HH-h----------
Confidence 3689999999999999999998 799999999875321 00 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.... .++++.+++||+|++++|......+ ..+ +...+.++++.++|+.|+..+-..+
T Consensus 186 ---------~~~~-~~l~ell~~aDvV~~~~p~t~~t~~-----li~--------~~~l~~mk~ga~lin~srg~~vd~~ 242 (331)
T 1xdw_A 186 ---------YCTQ-VSLDEVLEKSDIITIHAPYIKENGA-----VVT--------RDFLKKMKDGAILVNCARGQLVDTE 242 (331)
T ss_dssp ---------TCEE-CCHHHHHHHCSEEEECCCCCTTTCC-----SBC--------HHHHHTSCTTEEEEECSCGGGBCHH
T ss_pred ---------cccc-CCHHHHHhhCCEEEEecCCchHHHH-----HhC--------HHHHhhCCCCcEEEECCCcccccHH
Confidence 0122 3678889999999999875432211 111 3455678999999999998876666
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 243 aL~~ 246 (331)
T 1xdw_A 243 AVIE 246 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=83.93 Aligned_cols=72 Identities=10% Similarity=0.216 Sum_probs=55.0
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+++||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+..
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~--------------------------~~~~lvav~d~~~~~~~~~~~~~------- 50 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKS--------------------------EKLKLVTCYSRTEDKREKFGKRY------- 50 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTC--------------------------SSEEEEEEECSSHHHHHHHHHHH-------
T ss_pred CcceEEEEccCHHHHHHHHHHHhC--------------------------CCcEEEEEECCCHHHHHHHHHHc-------
Confidence 347999999999999999988771 477865 7899999988765310
Q ss_pred hHHHHhhhcCCceEEecCHHHHh--ccCcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAI--QKAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--~~adviii~v~tp~ 119 (598)
++...+|+++.+ .++|+|++|+|+..
T Consensus 51 -----------g~~~~~~~~~~l~~~~~D~V~i~tp~~~ 78 (354)
T 3db2_A 51 -----------NCAGDATMEALLAREDVEMVIITVPNDK 78 (354)
T ss_dssp -----------TCCCCSSHHHHHHCSSCCEEEECSCTTS
T ss_pred -----------CCCCcCCHHHHhcCCCCCEEEEeCChHH
Confidence 122357888888 56899999987764
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-06 Score=87.34 Aligned_cols=98 Identities=9% Similarity=0.130 Sum_probs=71.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|++||+++++.. +
T Consensus 144 g~~vgIIG~G~IG~~~A~~l~~---------------------------~G~~V~~~d~~~~~~~--------~------ 182 (311)
T 2cuk_A 144 GLTLGLVGMGRIGQAVAKRALA---------------------------FGMRVVYHARTPKPLP--------Y------ 182 (311)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCSSS--------S------
T ss_pred CCEEEEEEECHHHHHHHHHHHH---------------------------CCCEEEEECCCCcccc--------c------
Confidence 3689999999999999999998 7899999999754321 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
. ..++++.+++||+|++++|......+ . +. +...+.++++.++|+.|+..+-..+
T Consensus 183 -----------~-~~~l~ell~~aDvV~l~~p~~~~t~~-----l-----i~---~~~l~~mk~ga~lin~srg~~vd~~ 237 (311)
T 2cuk_A 183 -----------P-FLSLEELLKEADVVSLHTPLTPETHR-----L-----LN---RERLFAMKRGAILLNTARGALVDTE 237 (311)
T ss_dssp -----------C-BCCHHHHHHHCSEEEECCCCCTTTTT-----C-----BC---HHHHTTSCTTCEEEECSCGGGBCHH
T ss_pred -----------c-cCCHHHHHhhCCEEEEeCCCChHHHh-----h-----cC---HHHHhhCCCCcEEEECCCCCccCHH
Confidence 0 24577789999999999876432111 0 10 2345678999999999997776655
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 238 aL~~ 241 (311)
T 2cuk_A 238 ALVE 241 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.00 E-value=8e-06 Score=84.86 Aligned_cols=75 Identities=7% Similarity=0.062 Sum_probs=56.2
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~ 79 (598)
|..+++||+|||+|.||..++..|.+. .+++|+ ++|+++++.+.+.+..
T Consensus 1 M~m~~~~igiiG~G~~g~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~~~~~~---- 50 (330)
T 3e9m_A 1 MSLDKIRYGIMSTAQIVPRFVAGLRES--------------------------AQAEVRGIASRRLENAQKMAKEL---- 50 (330)
T ss_dssp --CCCEEEEECSCCTTHHHHHHHHHHS--------------------------SSEEEEEEBCSSSHHHHHHHHHT----
T ss_pred CCCCeEEEEEECchHHHHHHHHHHHhC--------------------------CCcEEEEEEeCCHHHHHHHHHHc----
Confidence 444567999999999999999999871 467776 6899999988776421
Q ss_pred CCChHHHHhhhcCCce-EEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 80 EPGLDEVVKKTRDVNL-FFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~-~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+. ...+|+++.++ ++|+|++|+|+..
T Consensus 51 --------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 79 (330)
T 3e9m_A 51 --------------AIPVAYGSYEELCKDETIDIIYIPTYNQG 79 (330)
T ss_dssp --------------TCCCCBSSHHHHHHCTTCSEEEECCCGGG
T ss_pred --------------CCCceeCCHHHHhcCCCCCEEEEcCCCHH
Confidence 11 34578888887 7899999987653
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-05 Score=80.05 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=76.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeC--CHHHHHHHHcCCCCCCC
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDK--SEERIRQWNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~--~~~~~~~~~~~~~~~~e 80 (598)
|||+|+| +|++|.+++..|+. .|+ ++.++|+ ++++++....
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~---------------------------~~~~~el~L~Di~~~~~~~~~~~~------- 46 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIAL---------------------------RDIADEVVFVDIPDKEDDTVGQAA------- 46 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCCSEEEEECCGGGHHHHHHHHH-------
T ss_pred CEEEEECCCChHHHHHHHHHHh---------------------------CCCCCEEEEEcCCCChhhHHHHHH-------
Confidence 5999999 99999999999988 443 7999999 8877653210
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.+.+... .....+.+.+..+++++||+||++.+.|..+...+.+ ...+...+++.++.+.++ .++.+|++ +|.|
T Consensus 47 -dl~~~~~--~~~~~~v~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv-~SNP 121 (303)
T 1o6z_A 47 -DTNHGIA--YDSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLT-TSNP 121 (303)
T ss_dssp -HHHHHHT--TTCCCEEEECCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEE-CCSS
T ss_pred -HHHHHHh--hCCCcEEEeCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEE-eCCh
Confidence 1111111 0112233323356899999999999877643211000 011234555556666655 35555555 7889
Q ss_pred hHHHHHHHH
Q psy11160 160 VRAAESIMN 168 (598)
Q Consensus 160 ~~~~~~~~~ 168 (598)
.+..-.++.
T Consensus 122 v~~~~~~~~ 130 (303)
T 1o6z_A 122 VDLLNRHLY 130 (303)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888755544
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.2e-05 Score=82.44 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=69.0
Q ss_pred CceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.||.. ++..|.+. .+++++ ++|+++++.+.+.+..
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~~a~~~------- 52 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKS--------------------------ERFEFVGAFTPNKVKREKICSDY------- 52 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSC--------------------------SSSEEEEEECSCHHHHHHHHHHH-------
T ss_pred cCcEEEEecCHHHHHHHHHHHHhC--------------------------CCeEEEEEECCCHHHHHHHHHHc-------
Confidence 479999999999996 78777761 567777 7999999998876410
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe--cCCch
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK--STVPV 160 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~--STv~~ 160 (598)
+....+|+++.++++|+|+||+|+... .+. +...+..++-|+.+ .+..+
T Consensus 53 -----------~~~~~~~~~~ll~~~D~V~i~tp~~~h---------------~~~---~~~al~~gk~vl~EKP~~~~~ 103 (308)
T 3uuw_A 53 -----------RIMPFDSIESLAKKCDCIFLHSSTETH---------------YEI---IKILLNLGVHVYVDKPLASTV 103 (308)
T ss_dssp -----------TCCBCSCHHHHHTTCSEEEECCCGGGH---------------HHH---HHHHHHTTCEEEECSSSSSSH
T ss_pred -----------CCCCcCCHHHHHhcCCEEEEeCCcHhH---------------HHH---HHHHHHCCCcEEEcCCCCCCH
Confidence 111257888888899999999876532 111 22233455555554 45566
Q ss_pred HHHHHHHH
Q psy11160 161 RAAESIMN 168 (598)
Q Consensus 161 ~~~~~~~~ 168 (598)
..++++..
T Consensus 104 ~~~~~l~~ 111 (308)
T 3uuw_A 104 SQGEELIE 111 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=80.43 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=55.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.||..++..|... .+++|+ ++|+++++.+.+.+.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~~~~~--------- 47 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGN--------------------------ADARLVAVADAFPAAAEAIAGA--------- 47 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC--------------------------TTEEEEEEECSSHHHHHHHHHH---------
T ss_pred ceEEEEECCCHHHHHHHHHHhhC--------------------------CCcEEEEEECCCHHHHHHHHHH---------
Confidence 47999999999999999999871 477877 699999998877642
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
.++. .+|+++.++ ++|+|++|+|+..
T Consensus 48 ---------~~~~-~~~~~~~l~~~~~D~V~i~tp~~~ 75 (331)
T 4hkt_A 48 ---------YGCE-VRTIDAIEAAADIDAVVICTPTDT 75 (331)
T ss_dssp ---------TTCE-ECCHHHHHHCTTCCEEEECSCGGG
T ss_pred ---------hCCC-cCCHHHHhcCCCCCEEEEeCCchh
Confidence 1234 678888887 7999999987653
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=81.85 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~ 79 (598)
|+.+..||+|||+|.||...+..|... .+++|+ ++|+++++.+...+-
T Consensus 1 M~m~~~~vgiiG~G~~g~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~a~~~----- 49 (359)
T 3e18_A 1 MSLKKYQLVIVGYGGMGSYHVTLASAA--------------------------DNLEVHGVFDILAEKREAAAQK----- 49 (359)
T ss_dssp --CCCEEEEEECCSHHHHHHHHHHHTS--------------------------TTEEEEEEECSSHHHHHHHHTT-----
T ss_pred CCCCcCcEEEECcCHHHHHHHHHHHhC--------------------------CCcEEEEEEcCCHHHHHHHHhc-----
Confidence 544457999999999999999888771 467876 579999998754321
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
++...+|+++.++ +.|+|+||+|+..
T Consensus 50 --------------g~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 50 --------------GLKIYESYEAVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp --------------TCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred --------------CCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 1234578888887 7899999987653
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.7e-05 Score=78.88 Aligned_cols=96 Identities=14% Similarity=0.251 Sum_probs=71.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. .|.+|+++|+++++.+.+.+- +
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~-------g-- 200 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAA---------------------------LGANVKVGARSSAHLARITEM-------G-- 200 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHHHT-------T--
T ss_pred CCEEEEEcccHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHC-------C--
Confidence 3689999999999999999998 789999999999887765431 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.......++++.+++||+|++++|...- + +...+.++++.++|+.+..+.++
T Consensus 201 --------~~~~~~~~l~~~l~~aDvVi~~~p~~~i----------~--------~~~~~~mk~g~~lin~a~g~~~~ 252 (300)
T 2rir_A 201 --------LVPFHTDELKEHVKDIDICINTIPSMIL----------N--------QTVLSSMTPKTLILDLASRPGGT 252 (300)
T ss_dssp --------CEEEEGGGHHHHSTTCSEEEECCSSCCB----------C--------HHHHTTSCTTCEEEECSSTTCSB
T ss_pred --------CeEEchhhHHHHhhCCCEEEECCChhhh----------C--------HHHHHhCCCCCEEEEEeCCCCCc
Confidence 0111124677788999999999875321 1 12345688999999999876654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0001 Score=71.55 Aligned_cols=128 Identities=12% Similarity=0.094 Sum_probs=78.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc--CCCCCC-CCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS--NKLPIY-EPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~--~~~~~~-e~~ 82 (598)
|||.|+|+|.+|..+|..|.+ .|++|+++|+++++++.+.+ +...+. +..
T Consensus 1 M~iiIiG~G~~G~~la~~L~~---------------------------~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~ 53 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLS---------------------------RKYGVVIINKDRELCEEFAKKLKATIIHGDGS 53 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHH---------------------------TTCCEEEEESCHHHHHHHHHHSSSEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHHHcCCeEEEcCCC
Confidence 589999999999999999999 89999999999999998763 211111 000
Q ss_pred hHHHHhhhcCCceEEecCHHHH-hccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSA-IQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
-. ..+.++ +.+||++|++++.+ .....+..+++.+.+..-++.. +-.+.
T Consensus 54 ~~--------------~~l~~a~i~~ad~vi~~~~~d---------------~~n~~~~~~a~~~~~~~~iia~-~~~~~ 103 (218)
T 3l4b_C 54 HK--------------EILRDAEVSKNDVVVILTPRD---------------EVNLFIAQLVMKDFGVKRVVSL-VNDPG 103 (218)
T ss_dssp SH--------------HHHHHHTCCTTCEEEECCSCH---------------HHHHHHHHHHHHTSCCCEEEEC-CCSGG
T ss_pred CH--------------HHHHhcCcccCCEEEEecCCc---------------HHHHHHHHHHHHHcCCCeEEEE-EeCcc
Confidence 00 112222 67899999997543 2233444555554444434333 33344
Q ss_pred HHHHHHHHHhhccCCcccccCCCCC--chHHHHHHHHHHHHhcCC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAAD--LKYVEAAARMIAEIATDN 204 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~d--l~~l~~A~~~Ia~~l~~~ 204 (598)
..+.+.. + ..| .++-+.+.+.+++.+..+
T Consensus 104 ~~~~l~~-~-------------G~d~vi~p~~~~~~~l~~~~~~~ 134 (218)
T 3l4b_C 104 NMEIFKK-M-------------GITTVLNLTTLITNTVEALIFPD 134 (218)
T ss_dssp GHHHHHH-H-------------TCEECCCHHHHHHHHHHHHHCTT
T ss_pred hHHHHHH-C-------------CCCEEECHHHHHHHHHHHHhccC
Confidence 4444422 1 233 455667777787776543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.7e-05 Score=77.80 Aligned_cols=96 Identities=10% Similarity=0.177 Sum_probs=70.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. .|.+|+++|+++++.+.+.+-.
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~~g--------- 198 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAA---------------------------LGAKVKVGARESDLLARIAEMG--------- 198 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHHHTT---------
T ss_pred CCEEEEEeeCHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHCC---------
Confidence 3689999999999999999998 7899999999998876554310
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.......++.+.++++|+|++++|... .+ . ...+.++++.++|+.+..+.++
T Consensus 199 --------~~~~~~~~l~~~l~~aDvVi~~~p~~~----------i~----~----~~l~~mk~~~~lin~ar~~~~~ 250 (293)
T 3d4o_A 199 --------MEPFHISKAAQELRDVDVCINTIPALV----------VT----A----NVLAEMPSHTFVIDLASKPGGT 250 (293)
T ss_dssp --------SEEEEGGGHHHHTTTCSEEEECCSSCC----------BC----H----HHHHHSCTTCEEEECSSTTCSB
T ss_pred --------CeecChhhHHHHhcCCCEEEECCChHH----------hC----H----HHHHhcCCCCEEEEecCCCCCC
Confidence 011112456778899999999986532 11 1 2334678999999998866554
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4e-05 Score=79.25 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=75.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH---HHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE---ERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~---~~~~~~~~~~~~~~e~ 81 (598)
|||+||| +|+||.++|..|+.+. ....+++++|+++ .....++.. +.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~------------------------~~~~el~L~Di~~~~~G~a~Dl~~~--~~--- 51 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL------------------------PSGSELSLYDIAPVTPGVAVDLSHI--PT--- 51 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS------------------------CTTEEEEEECSSTTHHHHHHHHHTS--CS---
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC------------------------CCCceEEEEecCCCchhHHHHhhCC--CC---
Confidence 6999999 8999999999998710 1236999999986 112223321 10
Q ss_pred ChHHHHhhhcCCceEE--ecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFF--STDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
...++. +++..+++++||+||++.+.|.++..++.+ -..+.+.+++..+.|.++.++ .++++- |-
T Consensus 52 ----------~~~v~~~~~~~~~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~-a~vlvv-tN 119 (312)
T 3hhp_A 52 ----------AVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPK-ACIGII-TN 119 (312)
T ss_dssp ----------SEEEEEECSSCCHHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEC-SS
T ss_pred ----------CceEEEecCCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEe-cC
Confidence 012332 124446899999999999988766432111 122455677777788887644 444443 56
Q ss_pred chHHHHHH
Q psy11160 159 PVRAAESI 166 (598)
Q Consensus 159 ~~~~~~~~ 166 (598)
|.++.-.+
T Consensus 120 Pvd~~t~~ 127 (312)
T 3hhp_A 120 PVNTTVAI 127 (312)
T ss_dssp CHHHHHHH
T ss_pred cchhHHHH
Confidence 77776544
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.9e-05 Score=67.84 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=37.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+++|.|+|+|.+|..++..|.. .|++|+++|+++++.+.+.+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~---------------------------~g~~v~~~d~~~~~~~~~~~ 47 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHR---------------------------MGHEVLAVDINEEKVNAYAS 47 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH---------------------------TTCCCEEEESCHHHHHTTTT
T ss_pred CCcEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHH
Confidence 4579999999999999999999 78999999999998876553
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=72.39 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=64.7
Q ss_pred CceEEEECC----ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 5 ISHICCIGA----GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~----G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
..+|+|||+ |.||..++..|.+ .|++|+.++.+.+.+
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~---------------------------~G~~V~~vnp~~~~i------------ 54 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLS---------------------------KGFEVLPVNPNYDEI------------ 54 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHH---------------------------TTCEEEEECTTCSEE------------
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHH---------------------------CCCEEEEeCCCCCeE------------
Confidence 368999999 9999999999999 799866666542111
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.+..+..++++..+.+|++++++|.+ .+.++++++.+ ...+.+++..||.
T Consensus 55 ------------~G~~~~~s~~el~~~vDlvii~vp~~---------------~v~~v~~~~~~-~g~~~i~~~~~~~ 104 (138)
T 1y81_A 55 ------------EGLKCYRSVRELPKDVDVIVFVVPPK---------------VGLQVAKEAVE-AGFKKLWFQPGAE 104 (138)
T ss_dssp ------------TTEECBSSGGGSCTTCCEEEECSCHH---------------HHHHHHHHHHH-TTCCEEEECTTSC
T ss_pred ------------CCeeecCCHHHhCCCCCEEEEEeCHH---------------HHHHHHHHHHH-cCCCEEEEcCccH
Confidence 13556677777777899999998732 46777777766 4556788887775
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.4e-05 Score=79.60 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=56.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.||..++..|..+ ..+++++ ++|+++++.+.+.+...
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~-------------------------~~~~~l~av~d~~~~~~~~~~~~~g------- 49 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNK-------------------------LSGAEIVAVTDVNQEAAQKVVEQYQ------- 49 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-------------------------CSSEEEEEEECSSHHHHHHHHHHTT-------
T ss_pred eEEEEEECccHHHHHHHHHHHhh-------------------------CCCcEEEEEEcCCHHHHHHHHHHhC-------
Confidence 36999999999999999999841 1567766 78999999888764210
Q ss_pred HHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~ 119 (598)
-.....+|+++.+++ +|+|++|+|+..
T Consensus 50 ---------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 78 (344)
T 3mz0_A 50 ---------LNATVYPNDDSLLADENVDAVLVTSWGPA 78 (344)
T ss_dssp ---------CCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred ---------CCCeeeCCHHHHhcCCCCCEEEECCCchh
Confidence 013567899988876 899999987653
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.2e-05 Score=80.59 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=69.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.||..++..|... .+++++ ++|+++++.+.+.+..
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~~~~~~-------- 47 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMI--------------------------DDAILYAISDVREDRLREMKEKL-------- 47 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGS--------------------------TTEEEEEEECSCHHHHHHHHHHH--------
T ss_pred eeEEEEEcCCHHHHHHHHHHHhC--------------------------CCcEEEEEECCCHHHHHHHHHHh--------
Confidence 36999999999999999888761 567776 6899999988765420
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCc-EEEEec-CCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNK-IVVEKS-TVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-ivv~~S-Tv~ 159 (598)
+.....+|+++.++ ++|+|++|+|+... .+ . +...+..++ +++.+. +..
T Consensus 48 ---------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--------------~~-~---~~~al~~gk~v~~EKP~~~~ 100 (344)
T 3ezy_A 48 ---------GVEKAYKDPHELIEDPNVDAVLVCSSTNTH--------------SE-L---VIACAKAKKHVFCEKPLSLN 100 (344)
T ss_dssp ---------TCSEEESSHHHHHHCTTCCEEEECSCGGGH--------------HH-H---HHHHHHTTCEEEEESCSCSC
T ss_pred ---------CCCceeCCHHHHhcCCCCCEEEEcCCCcch--------------HH-H---HHHHHhcCCeEEEECCCCCC
Confidence 11246788888887 79999999876431 11 1 222334455 445543 566
Q ss_pred hHHHHHHHH
Q psy11160 160 VRAAESIMN 168 (598)
Q Consensus 160 ~~~~~~~~~ 168 (598)
+..++++..
T Consensus 101 ~~e~~~l~~ 109 (344)
T 3ezy_A 101 LADVDRMIE 109 (344)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.2e-05 Score=77.73 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCceEEEECCChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+++||+|||+|.||..++..|. . ..++++ .++|+++++.+.+.+..
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~--------------------------~~~~~~vav~d~~~~~~~~~a~~~------ 54 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNK--------------------------IQGVKLVAACALDSNQLEWAKNEL------ 54 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHT--------------------------CSSEEEEEEECSCHHHHHHHHHTT------
T ss_pred CcceEEEEcCCHHHHHHHHHHHhc--------------------------CCCcEEEEEecCCHHHHHHHHHHh------
Confidence 3579999999999999999988 4 056775 57899999988765421
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
+.....+|+++.++ ++|+|++|+|+.
T Consensus 55 -----------g~~~~~~~~~~~l~~~~~D~V~i~tp~~ 82 (346)
T 3cea_A 55 -----------GVETTYTNYKDMIDTENIDAIFIVAPTP 82 (346)
T ss_dssp -----------CCSEEESCHHHHHTTSCCSEEEECSCGG
T ss_pred -----------CCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 01145678888886 699999998654
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=4.4e-05 Score=80.28 Aligned_cols=104 Identities=8% Similarity=0.021 Sum_probs=74.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..++..|... ....+|.+||+++++.+.+.+.... .++
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~-------------------------~~~~~V~V~~r~~~~a~~la~~~~~--~~g-- 179 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKH-------------------------LGIEEIVAYDTDPLATAKLIANLKE--YSG-- 179 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH-------------------------SCCCEEEEECSSHHHHHHHHHHHTT--CTT--
T ss_pred CCeEEEECCcHHHHHHHHHHHHh-------------------------CCCcEEEEEcCCHHHHHHHHHHHHh--ccC--
Confidence 46899999999999999888651 1357999999999999887642100 001
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.......++++++++||+||+|+|.+... +-+ . .+.+++++.|+..+|..|+.
T Consensus 180 --------~~~~~~~~~~eav~~aDiVi~aTps~~~~--------pvl---~------~~~l~~G~~V~~vgs~~p~~ 232 (350)
T 1x7d_A 180 --------LTIRRASSVAEAVKGVDIITTVTADKAYA--------TII---T------PDMLEPGMHLNAVGGDCPGK 232 (350)
T ss_dssp --------CEEEECSSHHHHHTTCSEEEECCCCSSEE--------EEE---C------GGGCCTTCEEEECSCCBTTB
T ss_pred --------ceEEEeCCHHHHHhcCCEEEEeccCCCCC--------cee---c------HHHcCCCCEEEECCCCCCCc
Confidence 12456688988999999999998765210 101 0 14578999999999988873
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.82 E-value=7e-05 Score=78.43 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=82.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH--HHH----HHHcCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE--RIR----QWNSNKLPI 78 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~----~~~~~~~~~ 78 (598)
-||+|+|+ |.+|.+++..|+. +.++|-. .-.++.++|+++. +++ .++....|.
T Consensus 25 vKVaViGAaG~IG~~la~~la~-------------------~~l~~~~-~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~ 84 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIAR-------------------GALLGPT-TPVELRLLDIEPALKALAGVEAELEDCAFPL 84 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHH-------------------TTTTCTT-CCEEEEEECCGGGHHHHHHHHHHHHHTTCTT
T ss_pred CEEEEECcCcHHHHHHHHHHHh-------------------ccccCCC-CccEEEEECCCCccccchhhhhhhhhcCccC
Confidence 39999996 9999999999998 1121111 1248999999763 222 233322221
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
......++++.+++++||+|||+-..|.++..++.+ -..+.+.+++..+.|.++..++.+|++- |
T Consensus 85 -------------~~~~~~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvv-s 150 (345)
T 4h7p_A 85 -------------LDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVV-G 150 (345)
T ss_dssp -------------EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-S
T ss_pred -------------CCcEEEcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEe-C
Confidence 134667888888999999999998888776543211 1234556677777788887787765442 3
Q ss_pred CchHHHHHH
Q psy11160 158 VPVRAAESI 166 (598)
Q Consensus 158 v~~~~~~~~ 166 (598)
-|..+.-.+
T Consensus 151 NPvd~~~~i 159 (345)
T 4h7p_A 151 NPANTNALI 159 (345)
T ss_dssp SSHHHHHHH
T ss_pred CCcchHHHH
Confidence 466555433
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.5e-05 Score=80.15 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=68.8
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
+|+|||+|.||.++|..|.. .|++|+++|+++++.+.+.+..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~---------------------------~g~~v~v~~r~~~~~~~l~~~~----------- 159 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALRE---------------------------AGLEVWVWNRTPQRALALAEEF----------- 159 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSHHHHHHHHHHH-----------
T ss_pred eEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHHh-----------
Confidence 89999999999999999999 7889999999999888765310
Q ss_pred HhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 87 VKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+.. ..++.++ +++|+||+|+|.+..... .. .+ . .+.++++++|++.++.|..+
T Consensus 160 -------~~~-~~~~~~~-~~~Divi~~tp~~~~~~~-----~~---~l----~--~~~l~~g~~viD~~~~p~~t 212 (263)
T 2d5c_A 160 -------GLR-AVPLEKA-REARLLVNATRVGLEDPS-----AS---PL----P--AELFPEEGAAVDLVYRPLWT 212 (263)
T ss_dssp -------TCE-ECCGGGG-GGCSEEEECSSTTTTCTT-----CC---SS----C--GGGSCSSSEEEESCCSSSSC
T ss_pred -------ccc-hhhHhhc-cCCCEEEEccCCCCCCCC-----CC---CC----C--HHHcCCCCEEEEeecCCccc
Confidence 012 3466667 899999999887642110 00 01 0 24567899999988875544
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.8e-05 Score=80.16 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=51.0
Q ss_pred CCCCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~ 78 (598)
|+.+++||+|||+|.||.. ++..|... .+++++ ++|+++++.+.+.+..
T Consensus 1 m~m~~~~vgiiG~G~~g~~~~~~~l~~~--------------------------~~~~lvav~d~~~~~~~~~~~~~--- 51 (319)
T 1tlt_A 1 MSLKKLRIGVVGLGGIAQKAWLPVLAAA--------------------------SDWTLQGAWSPTRAKALPICESW--- 51 (319)
T ss_dssp ----CEEEEEECCSTHHHHTHHHHHHSC--------------------------SSEEEEEEECSSCTTHHHHHHHH---
T ss_pred CCCCcceEEEECCCHHHHHHHHHHHHhC--------------------------CCeEEEEEECCCHHHHHHHHHHc---
Confidence 4445679999999999997 88877651 567876 8999998887665310
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+...++++++...++|+|++|+|+.
T Consensus 52 ---------------g~~~~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 52 ---------------RIPYADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp ---------------TCCBCSSHHHHHTTCSEEEECSCTT
T ss_pred ---------------CCCccCcHHHhhcCCCEEEEeCCch
Confidence 1113456664446799999998754
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.9e-05 Score=78.98 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=52.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+++||+|||+|.||..++..|.+. .++++ .++|+++++.+.+.+.
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~--------------------------~~~~~v~v~d~~~~~~~~~~~~-------- 54 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGL--------------------------PGAALVRLASSNPDNLALVPPG-------- 54 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHC--------------------------TTEEEEEEEESCHHHHTTCCTT--------
T ss_pred CcceEEEECCcHHHHHHHHHHHhC--------------------------CCcEEEEEEeCCHHHHHHHHhh--------
Confidence 357999999999999999999871 46665 5899999887643321
Q ss_pred hHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
....+|+++.++ ++|+|++|+|+.
T Consensus 55 ------------~~~~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 55 ------------CVIESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp ------------CEEESSTHHHHTCTTCCEEEEESCGG
T ss_pred ------------CcccCCHHHHhhCCCCCEEEEeCChH
Confidence 235678888885 799999998654
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.8e-05 Score=78.07 Aligned_cols=71 Identities=8% Similarity=0.176 Sum_probs=54.4
Q ss_pred CceEEEECCChhHH-HHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGG-PTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~-~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.||. .++..|... .+++|+ ++|+++++.+.+.+.
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~~a~~-------- 72 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAE--------------------------PLTEVTAIASRRWDRAKRFTER-------- 72 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHC--------------------------TTEEEEEEEESSHHHHHHHHHH--------
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhC--------------------------CCeEEEEEEcCCHHHHHHHHHH--------
Confidence 46999999999998 788888871 477876 789999998876642
Q ss_pred hHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
-++...+|+++.++ +.|+|+||+|+..
T Consensus 73 ----------~g~~~~~~~~~ll~~~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 73 ----------FGGEPVEGYPALLERDDVDAVYVPLPAVL 101 (350)
T ss_dssp ----------HCSEEEESHHHHHTCTTCSEEEECCCGGG
T ss_pred ----------cCCCCcCCHHHHhcCCCCCEEEECCCcHH
Confidence 02334588888886 5899999987653
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.1e-05 Score=80.24 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=52.1
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~ 79 (598)
|..+++||+|||+|.||..++..|... .+.+|+ ++|+++++.+.+.+..
T Consensus 1 M~m~~~rigiiG~G~ig~~~~~~l~~~--------------------------~~~~~~av~d~~~~~~~~~a~~~---- 50 (329)
T 3evn_A 1 MSLSKVRYGVVSTAKVAPRFIEGVRLA--------------------------GNGEVVAVSSRTLESAQAFANKY---- 50 (329)
T ss_dssp ----CEEEEEEBCCTTHHHHHHHHHHH--------------------------CSEEEEEEECSCSSTTCC---CC----
T ss_pred CCCCceEEEEEechHHHHHHHHHHHhC--------------------------CCcEEEEEEcCCHHHHHHHHHHc----
Confidence 444567999999999999999988871 456655 6799988776554321
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+.....+|+++.++ ++|+|+||+|+..
T Consensus 51 -------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 79 (329)
T 3evn_A 51 -------------HLPKAYDKLEDMLADESIDVIYVATINQD 79 (329)
T ss_dssp -------------CCSCEESCHHHHHTCTTCCEEEECSCGGG
T ss_pred -------------CCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence 00135688888887 7899999987653
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=77.55 Aligned_cols=101 Identities=21% Similarity=0.351 Sum_probs=66.9
Q ss_pred CCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+++||+|||+|.+|.. .+..+.. ..+++|+ ++|++++++....
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~--------------------------~~~~~l~av~d~~~~~~~~~~--------- 50 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRS--------------------------VPGLNLAFVASRDEEKVKRDL--------- 50 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHT--------------------------STTEEEEEEECSCHHHHHHHC---------
T ss_pred CcceEEEECCCHHHHHHHHHHHhh--------------------------CCCeEEEEEEcCCHHHHHhhC---------
Confidence 4579999999999997 6666665 0467775 7899998865211
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec--C
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS--T 157 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S--T 157 (598)
......+|+++.++ +.|+|+||+|+... . +.+...+..|+-|+.+. +
T Consensus 51 -----------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H--------------~----~~~~~al~aGk~Vl~EKPla 101 (364)
T 3e82_A 51 -----------PDVTVIASPEAAVQHPDVDLVVIASPNATH--------------A----PLARLALNAGKHVVVDKPFT 101 (364)
T ss_dssp -----------TTSEEESCHHHHHTCTTCSEEEECSCGGGH--------------H----HHHHHHHHTTCEEEECSCSC
T ss_pred -----------CCCcEECCHHHHhcCCCCCEEEEeCChHHH--------------H----HHHHHHHHCCCcEEEeCCCc
Confidence 12456789998887 78999999766532 1 22233445677677666 4
Q ss_pred CchHHHHHHHH
Q psy11160 158 VPVRAAESIMN 168 (598)
Q Consensus 158 v~~~~~~~~~~ 168 (598)
.....++++..
T Consensus 102 ~~~~e~~~l~~ 112 (364)
T 3e82_A 102 LDMQEARELIA 112 (364)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45555555543
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.74 E-value=6e-05 Score=79.21 Aligned_cols=75 Identities=11% Similarity=0.161 Sum_probs=55.2
Q ss_pred CCCCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~ 78 (598)
|+.+.+||+|||+|.+|.. ++..|... ++.+|+ ++|+++++.+.+.+..
T Consensus 1 M~M~~~rigiIG~G~~g~~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~~a~~~--- 51 (359)
T 3m2t_A 1 MSLSLIKVGLVGIGAQMQENLLPSLLQM--------------------------QDIRIVAACDSDLERARRVHRFI--- 51 (359)
T ss_dssp --CCCEEEEEECCSHHHHHTHHHHHHTC--------------------------TTEEEEEEECSSHHHHGGGGGTS---
T ss_pred CCCCcceEEEECCCHHHHHHHHHHHHhC--------------------------CCcEEEEEEcCCHHHHHHHHHhc---
Confidence 5444579999999999985 78888761 467876 7899999988776431
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTP 118 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp 118 (598)
......+|+++.+++ .|+|+||+|+.
T Consensus 52 --------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 79 (359)
T 3m2t_A 52 --------------SDIPVLDNVPAMLNQVPLDAVVMAGPPQ 79 (359)
T ss_dssp --------------CSCCEESSHHHHHHHSCCSEEEECSCHH
T ss_pred --------------CCCcccCCHHHHhcCCCCCEEEEcCCcH
Confidence 123456889888875 49999997654
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00016 Score=75.80 Aligned_cols=106 Identities=15% Similarity=0.243 Sum_probs=69.1
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+++||+|||+|.||..++..|... .++++ .++|+++++.+.+.+... +
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~--------------------------~~~~lv~v~d~~~~~~~~~a~~~~-~---- 53 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLA--------------------------PNATISGVASRSLEKAKAFATANN-Y---- 53 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHC--------------------------TTEEEEEEECSSHHHHHHHHHHTT-C----
T ss_pred CceEEEEECchHHHHHHHHHHhhC--------------------------CCcEEEEEEcCCHHHHHHHHHHhC-C----
Confidence 357999999999999999888871 45665 578999999887654210 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec--CC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS--TV 158 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S--Tv 158 (598)
.......+|+++.++ ++|+|++|+|+... .+.+...+..++-|+.+. +.
T Consensus 54 ---------~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h------------------~~~~~~al~aGk~V~~EKP~a~ 106 (362)
T 1ydw_A 54 ---------PESTKIHGSYESLLEDPEIDALYVPLPTSLH------------------VEWAIKAAEKGKHILLEKPVAM 106 (362)
T ss_dssp ---------CTTCEEESSHHHHHHCTTCCEEEECCCGGGH------------------HHHHHHHHTTTCEEEECSSCSS
T ss_pred ---------CCCCeeeCCHHHHhcCCCCCEEEEcCChHHH------------------HHHHHHHHHCCCeEEEecCCcC
Confidence 001356788888886 58999999865431 122334456677665554 34
Q ss_pred chHHHHHHH
Q psy11160 159 PVRAAESIM 167 (598)
Q Consensus 159 ~~~~~~~~~ 167 (598)
....++++.
T Consensus 107 ~~~e~~~l~ 115 (362)
T 1ydw_A 107 NVTEFDKIV 115 (362)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 444444444
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0001 Score=77.31 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=55.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.||..++..|..+ ..+++|+ ++|+++++.+.+.+...
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~-------------------------~~~~~lvav~d~~~~~~~~~a~~~g------- 70 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANT-------------------------VSGVEVVAVCDIVAGRAQAALDKYA------- 70 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-------------------------CTTEEEEEEECSSTTHHHHHHHHHT-------
T ss_pred eeeEEEECCcHHHHHHHHHHHhh-------------------------CCCcEEEEEEeCCHHHHHHHHHHhC-------
Confidence 36899999999999999999841 1567766 68999999887664200
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
......+|+++.++ +.|+|+||+|+..
T Consensus 71 ---------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 71 ---------IEAKDYNDYHDLINDKDVEVVIITASNEA 99 (357)
T ss_dssp ---------CCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred ---------CCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 01356788988887 4899999987653
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0002 Score=74.77 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=80.4
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-------eEEEEeCCH--HHHH----H
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-------QVTVVDKSE--ERIR----Q 70 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~v~~~d~~~--~~~~----~ 70 (598)
-+||+|+| +|.+|.++|..|+. .|. .+.++|+++ ++.+ .
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~---------------------------~~~~~e~~~~~l~L~Di~~~~~~~~g~a~D 55 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGN---------------------------GSVFGKDQPIILVLLDITPMMGVLDGVLME 55 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHT---------------------------TTTTCTTCCEEEEEECCGGGHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHh---------------------------CCCccccCCCEEEEEeCCCccccchhhHhh
Confidence 46999999 79999999999988 332 399999974 3333 2
Q ss_pred HHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCC
Q psy11160 71 WNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDN 149 (598)
Q Consensus 71 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 149 (598)
++....++. .....+++..+++++||+||++...|..+..++.+ -..+.+.+++..+.|.++.+++
T Consensus 56 L~~~~~~~~-------------~~~~~~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~ 122 (333)
T 5mdh_A 56 LQDCALPLL-------------KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122 (333)
T ss_dssp HHHTCCTTE-------------EEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHhhhhccc-------------CCEEEcCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333222221 23566777777999999999998777655432211 1234566777778888877666
Q ss_pred cEEEEecCCchHHHHHHHH
Q psy11160 150 KIVVEKSTVPVRAAESIMN 168 (598)
Q Consensus 150 ~ivv~~STv~~~~~~~~~~ 168 (598)
.++++ -|-|..+.-.++.
T Consensus 123 ~~viv-vsNPvd~~t~~~~ 140 (333)
T 5mdh_A 123 VKVIV-VGNPANTNCLTAS 140 (333)
T ss_dssp CEEEE-CSSSHHHHHHHHH
T ss_pred eEEEE-cCCchHHHHHHHH
Confidence 53333 3456666655544
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=75.43 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=51.7
Q ss_pred ceEEEECCChhHHHH-HHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPT-CSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.||..+ +..|.+ .+++++ ++|+++++.+.+.+...
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~---------------------------~~~~~vav~d~~~~~~~~~~~~~g------- 46 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA---------------------------TGGEVVSMMSTSAERGAAYATENG------- 46 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH---------------------------TTCEEEEEECSCHHHHHHHHHHTT-------
T ss_pred CeEEEEcccHHHHHhhhHHhhc---------------------------CCCeEEEEECCCHHHHHHHHHHcC-------
Confidence 489999999999998 778877 677765 78999999887654210
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
.....+|+++.++ ++|+|++|+|..
T Consensus 47 ----------~~~~~~~~~~~l~~~~~D~V~i~tp~~ 73 (332)
T 2glx_A 47 ----------IGKSVTSVEELVGDPDVDAVYVSTTNE 73 (332)
T ss_dssp ----------CSCCBSCHHHHHTCTTCCEEEECSCGG
T ss_pred ----------CCcccCCHHHHhcCCCCCEEEEeCChh
Confidence 0023467777776 599999998754
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.5e-05 Score=80.14 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=74.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||+|||+|.+|..+|..+.. .|.+|+++|+++++.+.+.+-...+.+-.+.+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~---------------------------lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~ 243 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARR---------------------------LGAVVSATDVRPAAKEQVASLGAKFIAVEDEE 243 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSTTHHHHHHHTTCEECCCCC--
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHHcCCceeeccccc
Confidence 689999999999999999988 78999999999999888775211111100000
Q ss_pred HHhhhcCCceEE-----------ecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 86 VVKKTRDVNLFF-----------STDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 86 ~~~~~~~~~~~~-----------~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
. +......... ..++.+++++||+||.|+..|... .+.+ +.++..+.++++.+||+
T Consensus 244 ~-~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~-------ap~L-----vt~emv~~Mk~GsVIVD 310 (405)
T 4dio_A 244 F-KAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRP-------APRL-----VTREMLDSMKPGSVVVD 310 (405)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSSC-------CCCC-----BCHHHHTTSCTTCEEEE
T ss_pred c-cccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCC-------CCEE-----ecHHHHhcCCCCCEEEE
Confidence 0 0000000001 125677899999999997655321 1111 12466678899999999
Q ss_pred ecCCchHH
Q psy11160 155 KSTVPVRA 162 (598)
Q Consensus 155 ~STv~~~~ 162 (598)
.|.-+.|.
T Consensus 311 vA~d~GG~ 318 (405)
T 4dio_A 311 LAVERGGN 318 (405)
T ss_dssp TTGGGTCS
T ss_pred EeCCCCCC
Confidence 87655444
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.1e-05 Score=79.72 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=73.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
.||+|||+|.+|..+|..+.. .|.+|+++|+++++.+.+.+ |...+ +...+
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~---------------------------lGa~V~v~D~~~~~l~~~~~lGa~~~-~l~~~ 236 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKR---------------------------LGAKTTGYDVRPEVAEQVRSVGAQWL-DLGID 236 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHH---------------------------HTCEEEEECSSGGGHHHHHHTTCEEC-CCC--
T ss_pred CEEEEECchHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHcCCeEE-ecccc
Confidence 689999999999999999888 68899999999998888775 22111 10000
Q ss_pred HHHhhhcCCce---------EEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 85 EVVKKTRDVNL---------FFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 85 ~~~~~~~~~~~---------~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
... ..... ....++.+++++||+||.++..|... .+.+ +.++..+.++++.+||+.
T Consensus 237 -~~~--~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~-------ap~L-----vt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 237 -AAG--EGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGRP-------APRL-----VTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSC-------CCCC-----BCHHHHHTSCTTCEEEET
T ss_pred -ccc--cccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCcc-------ccee-----ecHHHHhcCCCCcEEEEE
Confidence 000 00000 00235677899999999997555321 1111 124566788999999998
Q ss_pred cCCchHH
Q psy11160 156 STVPVRA 162 (598)
Q Consensus 156 STv~~~~ 162 (598)
|.-+.|.
T Consensus 302 A~d~GG~ 308 (381)
T 3p2y_A 302 AGETGGN 308 (381)
T ss_dssp TGGGTCS
T ss_pred eCCCCCc
Confidence 7655554
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00025 Score=77.58 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=69.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|.+|++||+++.+......
T Consensus 277 GktVgIIG~G~IG~~vA~~l~~---------------------------~G~~V~v~d~~~~~~~~a~~----------- 318 (494)
T 3d64_A 277 GKIAVVAGYGDVGKGCAQSLRG---------------------------LGATVWVTEIDPICALQAAM----------- 318 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECSCHHHHHHHHT-----------
T ss_pred CCEEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEEeCChHhHHHHHH-----------
Confidence 3689999999999999999988 78999999999987533221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.+... .++++++++||+|++++.|+. ..+ +...+.++++.++++.++..+
T Consensus 319 --------~G~~~-~~l~ell~~aDiVi~~~~t~~---------lI~--------~~~l~~MK~gAilINvgrg~v 368 (494)
T 3d64_A 319 --------EGYRV-VTMEYAADKADIFVTATGNYH---------VIN--------HDHMKAMRHNAIVCNIGHFDS 368 (494)
T ss_dssp --------TTCEE-CCHHHHTTTCSEEEECSSSSC---------SBC--------HHHHHHCCTTEEEEECSSSSC
T ss_pred --------cCCEe-CCHHHHHhcCCEEEECCCccc---------ccC--------HHHHhhCCCCcEEEEcCCCcc
Confidence 01222 368889999999999985432 111 245567899999999888654
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.63 E-value=8.3e-05 Score=76.78 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=49.9
Q ss_pred CceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.||.. ++..|... .+.+|+++|+++++.+.+.+... +
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~--------------------------~~~~l~v~d~~~~~~~~~a~~~g-~----- 49 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQW--------------------------PDIELVLCTRNPKVLGTLATRYR-V----- 49 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTS--------------------------TTEEEEEECSCHHHHHHHHHHTT-C-----
T ss_pred CcEEEEECCCHHHHHHHHHHHHhC--------------------------CCceEEEEeCCHHHHHHHHHHcC-C-----
Confidence 369999999999984 88888661 46788899999999987764210 0
Q ss_pred HHHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp 118 (598)
. ....+..+.+ .++|+|++|+|+.
T Consensus 50 ----------~-~~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 50 ----------S-ATCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp ----------C-CCCSSTTGGGGGCCSEEEECSCGG
T ss_pred ----------C-ccccCHHHHhhcCCCEEEEECCch
Confidence 0 0022333355 6899999998754
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00022 Score=77.73 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=69.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|.+|++||+++.+.......
T Consensus 257 GktVgIIG~G~IG~~vA~~l~~---------------------------~G~~Viv~d~~~~~~~~a~~~---------- 299 (479)
T 1v8b_A 257 GKIVVICGYGDVGKGCASSMKG---------------------------LGARVYITEIDPICAIQAVME---------- 299 (479)
T ss_dssp TSEEEEECCSHHHHHHHHHHHH---------------------------HTCEEEEECSCHHHHHHHHTT----------
T ss_pred CCEEEEEeeCHHHHHHHHHHHh---------------------------CcCEEEEEeCChhhHHHHHHc----------
Confidence 4689999999999999999988 689999999999876332211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
+... .++++++++||+|++++.+.. ..+ +...+.++++.++++.++..+
T Consensus 300 ---------g~~~-~~l~ell~~aDiVi~~~~t~~---------lI~--------~~~l~~MK~gailiNvgrg~~ 348 (479)
T 1v8b_A 300 ---------GFNV-VTLDEIVDKGDFFITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHFDD 348 (479)
T ss_dssp ---------TCEE-CCHHHHTTTCSEEEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSSTTT
T ss_pred ---------CCEe-cCHHHHHhcCCEEEECCChhh---------hcC--------HHHHhhcCCCcEEEEeCCCCc
Confidence 1222 468889999999999964432 111 234567899999999998766
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.4e-05 Score=70.01 Aligned_cols=86 Identities=9% Similarity=0.041 Sum_probs=62.3
Q ss_pred ceEEEECC----ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCC
Q psy11160 6 SHICCIGA----GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIY 79 (598)
Q Consensus 6 ~~I~viG~----G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~ 79 (598)
.+|+|||+ |.+|..++..|.+ .|++|+.++.+. +.+
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~---------------------------~G~~v~~vnp~~~g~~i----------- 55 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLD---------------------------QGYHVIPVSPKVAGKTL----------- 55 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHH---------------------------HTCCEEEECSSSTTSEE-----------
T ss_pred CEEEEECcCCCCCChHHHHHHHHHH---------------------------CCCEEEEeCCccccccc-----------
Confidence 57999999 8999999999998 788866666543 111
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.+..+..++++....+|++++++|.+ .+.++++++.+ ...+.+++..||.
T Consensus 56 -------------~G~~~~~sl~el~~~~Dlvii~vp~~---------------~v~~v~~~~~~-~g~~~i~i~~~~~ 105 (145)
T 2duw_A 56 -------------LGQQGYATLADVPEKVDMVDVFRNSE---------------AAWGVAQEAIA-IGAKTLWLQLGVI 105 (145)
T ss_dssp -------------TTEECCSSTTTCSSCCSEEECCSCST---------------HHHHHHHHHHH-HTCCEEECCTTCC
T ss_pred -------------CCeeccCCHHHcCCCCCEEEEEeCHH---------------HHHHHHHHHHH-cCCCEEEEcCChH
Confidence 13455566766667899999998742 46777777776 4455677776666
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00015 Score=75.45 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=54.1
Q ss_pred CCCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCC
Q psy11160 2 VQTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~ 79 (598)
.++|+||+|||+|.+|.. ++..+..- ++.+|+ ++|+++++.+.+.+..
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~--------------------------~~~~lvav~d~~~~~a~~~a~~~---- 69 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDA--------------------------ENCVVTAIASRDLTRAREMADRF---- 69 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHC--------------------------SSEEEEEEECSSHHHHHHHHHHH----
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhC--------------------------CCeEEEEEECCCHHHHHHHHHHc----
Confidence 456789999999999975 45566650 467766 6899999998876420
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+--+..+|+++.++ +.|+|+||+|++.
T Consensus 70 -------------g~~~~y~d~~ell~~~~iDaV~I~tP~~~ 98 (350)
T 4had_A 70 -------------SVPHAFGSYEEMLASDVIDAVYIPLPTSQ 98 (350)
T ss_dssp -------------TCSEEESSHHHHHHCSSCSEEEECSCGGG
T ss_pred -------------CCCeeeCCHHHHhcCCCCCEEEEeCCCch
Confidence 11246788998885 4799999987654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00027 Score=77.42 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=69.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++|+|||+|.||..+|..+.. .|.+|+++|+++.+.+...+-
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka---------------------------~Ga~Viv~d~~~~~~~~A~~~--------- 316 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKG---------------------------QGARVSVTEIDPINALQAMME--------- 316 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHT---------
T ss_pred CcCEEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHc---------
Confidence 34789999999999999999988 789999999999987665431
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
+.. ..+++++++.+|+||.+++++.- +. ....+.++++.++++.+...
T Consensus 317 ----------Ga~-~~~l~e~l~~aDvVi~atgt~~~--------------i~---~~~l~~mk~ggilvnvG~~~ 364 (494)
T 3ce6_A 317 ----------GFD-VVTVEEAIGDADIVVTATGNKDI--------------IM---LEHIKAMKDHAILGNIGHFD 364 (494)
T ss_dssp ----------TCE-ECCHHHHGGGCSEEEECSSSSCS--------------BC---HHHHHHSCTTCEEEECSSSG
T ss_pred ----------CCE-EecHHHHHhCCCEEEECCCCHHH--------------HH---HHHHHhcCCCcEEEEeCCCC
Confidence 122 23566788999999999866521 11 23456688999999877654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00022 Score=73.92 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-------eEEEEeCCH--HHHH--
Q psy11160 2 VQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-------QVTVVDKSE--ERIR-- 69 (598)
Q Consensus 2 ~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~v~~~d~~~--~~~~-- 69 (598)
|.+.|||.|+|+ |++|.+++..|.. .|+ +|+++|+++ ++.+
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~---------------------------~g~~~~~~~~ev~l~D~~~~~~~~~g~ 53 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAA---------------------------GEMLGKDQPVILQLLEIPQAMKALEGV 53 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHT---------------------------TTTTCTTCCEEEEEECCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHh---------------------------CCCCCCCCCCEEEEEeCCCchhhccch
Confidence 344579999997 9999999999988 564 899999974 3322
Q ss_pred --HHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCC-CCCCcchHHHHHHHHHHHHHc
Q psy11160 70 --QWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNG-KGRAADLKYVEAAARMIAEIA 146 (598)
Q Consensus 70 --~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 146 (598)
.+.....++ . ..++.+.+..++++++|+||.+...+..+.... .....+...+.++++.+.+..
T Consensus 54 ~~dl~~~~~~~------------~-~di~~~~~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~ 120 (327)
T 1y7t_A 54 VMELEDCAFPL------------L-AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120 (327)
T ss_dssp HHHHHTTTCTT------------E-EEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcccccc------------c-CCeEeccChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222211111 0 235566777788999999999986654321100 001123344555556666654
Q ss_pred CCC-cEEEEe
Q psy11160 147 TDN-KIVVEK 155 (598)
Q Consensus 147 ~~~-~ivv~~ 155 (598)
.++ .+++..
T Consensus 121 ~~~~~vvv~s 130 (327)
T 1y7t_A 121 KKDVKVLVVG 130 (327)
T ss_dssp CTTCEEEECS
T ss_pred CCCeEEEEeC
Confidence 244 444443
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00028 Score=73.13 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=67.4
Q ss_pred CceEEEECCChhHH-HHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGG-PTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~-~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.+|. .++..|.. .+++| .++|+++++.+.+.+..
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~---------------------------~~~~lvav~d~~~~~~~~~a~~~------- 49 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLID---------------------------AGAELAGVFESDSDNRAKFTSLF------- 49 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHH---------------------------TTCEEEEEECSCTTSCHHHHHHS-------
T ss_pred ccEEEEECCChHHHHHhhhhhcC---------------------------CCcEEEEEeCCCHHHHHHHHHhc-------
Confidence 46999999999996 67777766 67885 58899998887765421
Q ss_pred hHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCc-EEEEe-cCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNK-IVVEK-STV 158 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-ivv~~-STv 158 (598)
......+|+++.++ +.|+|+||+|+... .+ .+...+..|+ +++++ .+.
T Consensus 50 ----------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--------------~~----~~~~al~aGkhVl~EKP~a~ 101 (336)
T 2p2s_A 50 ----------PSVPFAASAEQLITDASIDLIACAVIPCDR--------------AE----LALRTLDAGKDFFTAKPPLT 101 (336)
T ss_dssp ----------TTCCBCSCHHHHHTCTTCCEEEECSCGGGH--------------HH----HHHHHHHTTCEEEECSSCCS
T ss_pred ----------CCCcccCCHHHHhhCCCCCEEEEeCChhhH--------------HH----HHHHHHHCCCcEEEeCCCCC
Confidence 01234678888876 68999999876532 11 2223344566 44544 455
Q ss_pred chHHHHHHHH
Q psy11160 159 PVRAAESIMN 168 (598)
Q Consensus 159 ~~~~~~~~~~ 168 (598)
.+..++++..
T Consensus 102 ~~~e~~~l~~ 111 (336)
T 2p2s_A 102 TLEQLDAVQR 111 (336)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5666666554
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00028 Score=74.55 Aligned_cols=126 Identities=11% Similarity=0.125 Sum_probs=75.4
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCH----HHHH----HHH
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSE----ERIR----QWN 72 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~----~~~~----~~~ 72 (598)
..+||+|+| +|.+|.++|..|+.+ .+ .+ -++.++|++. ++++ .|+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~-------------------~l-----~~e~~~l~L~d~d~~~~~~~~~G~amDL~ 86 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASG-------------------EV-----FGQDQPIALKLLGSERSFQALEGVAMELE 86 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-------------------TT-----TCTTCCEEEEEECCGGGHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHcC-------------------Cc-----CCCCceeEEEecCccchhhhhHHHHHhHH
Confidence 347999999 799999999999981 00 11 1377765533 2232 233
Q ss_pred cCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcE
Q psy11160 73 SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKI 151 (598)
Q Consensus 73 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~i 151 (598)
.+..|+. .+.+.+++..+++++||+||++-..|.++..++.+ -..+.+.+++..+.|.++..++.+
T Consensus 87 h~~~p~~-------------~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~i 153 (375)
T 7mdh_A 87 DSLYPLL-------------REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 153 (375)
T ss_dssp TTTCTTE-------------EEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhc-------------CCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 3322221 23455666667999999999998777665432111 122345566666677777556665
Q ss_pred EEEecCCchHHHHHHH
Q psy11160 152 VVEKSTVPVRAAESIM 167 (598)
Q Consensus 152 vv~~STv~~~~~~~~~ 167 (598)
|++-| -|..+.-.++
T Consensus 154 vlVvs-NPvD~~t~ia 168 (375)
T 7mdh_A 154 VLVVG-NPCNTNALIC 168 (375)
T ss_dssp EEECS-SSHHHHHHHH
T ss_pred EEEec-CchhHHHHHH
Confidence 55433 5666654443
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00046 Score=72.06 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=52.0
Q ss_pred CCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+++||+|||+|.+|.. .+..+... .+.+|+ ++|+++++.+. . .
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~--------------------------~~~~l~av~d~~~~~~~~---~-~----- 50 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGT--------------------------PGLELAGVSSSDASKVHA---D-W----- 50 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTS--------------------------TTEEEEEEECSCHHHHHT---T-C-----
T ss_pred CCceEEEECCCHHHHHHHHHHHhhC--------------------------CCcEEEEEECCCHHHHHh---h-C-----
Confidence 4579999999999997 67677650 467765 78999988761 1 0
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPT 119 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~ 119 (598)
.+....+|+++.+++ .|+|+||+|+..
T Consensus 51 -----------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 79 (352)
T 3kux_A 51 -----------PAIPVVSDPQMLFNDPSIDLIVIPTPNDT 79 (352)
T ss_dssp -----------SSCCEESCHHHHHHCSSCCEEEECSCTTT
T ss_pred -----------CCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence 123567889888875 899999987654
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00026 Score=73.38 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=71.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..++..|+. .+...+|.+||+++++.+.+.+.
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~-------------------------~~~~~~V~v~~r~~~~a~~la~~---------- 169 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRR-------------------------VFDIGEVKAYDVREKAAKKFVSY---------- 169 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-------------------------HSCCCEEEEECSSHHHHHHHHHH----------
T ss_pred CCEEEEEcCcHHHHHHHHHHHH-------------------------hCCccEEEEECCCHHHHHHHHHH----------
Confidence 4689999999999999999887 11357899999999999887642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+... ..... ..++++++ ++|+|++|+|.... -+ . .+.+++++.|+..++..|+.
T Consensus 170 --~~~~-~~~~~-~~~~~e~v-~aDvVi~aTp~~~p----------v~---~------~~~l~~G~~V~~ig~~~p~~ 223 (322)
T 1omo_A 170 --CEDR-GISAS-VQPAEEAS-RCDVLVTTTPSRKP----------VV---K------AEWVEEGTHINAIGADGPGK 223 (322)
T ss_dssp --HHHT-TCCEE-ECCHHHHT-SSSEEEECCCCSSC----------CB---C------GGGCCTTCEEEECSCCSTTC
T ss_pred --HHhc-CceEE-ECCHHHHh-CCCEEEEeeCCCCc----------ee---c------HHHcCCCeEEEECCCCCCCc
Confidence 0000 01245 67888899 99999999875321 01 0 13578999999998887764
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.52 E-value=8.9e-05 Score=77.33 Aligned_cols=103 Identities=12% Similarity=0.183 Sum_probs=65.7
Q ss_pred CceEEEECCChhHHHHHHH-HHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.||..+... +.. +..+++|+ ++|+++++.+...+-
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~-------------------------~~~~~~l~av~d~~~~~~~~~~~~-------- 48 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLN-------------------------RKDSWHVAHIFRRHAKPEEQAPIY-------- 48 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTT-------------------------CTTTEEEEEEECSSCCGGGGSGGG--------
T ss_pred ceEEEEEecCHHHHHHHHHHHHh-------------------------cCCCeEEEEEEcCCHhHHHHHHhc--------
Confidence 4799999999999864333 322 11577877 789987765322210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec--CC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS--TV 158 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S--Tv 158 (598)
.+....+|+++.+++ .|+|+||+|+... . +.+...+..|+-|+.+- +.
T Consensus 49 ----------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--------------~----~~~~~al~aGk~Vl~EKP~a~ 100 (345)
T 3f4l_A 49 ----------SHIHFTSDLDEVLNDPDVKLVVVCTHADSH--------------F----EYAKRALEAGKNVLVEKPFTP 100 (345)
T ss_dssp ----------TTCEEESCTHHHHTCTTEEEEEECSCGGGH--------------H----HHHHHHHHTTCEEEECSSSCS
T ss_pred ----------CCCceECCHHHHhcCCCCCEEEEcCChHHH--------------H----HHHHHHHHcCCcEEEeCCCCC
Confidence 234677889888876 8999999876532 1 22334455677777766 34
Q ss_pred chHHHHHHHH
Q psy11160 159 PVRAAESIMN 168 (598)
Q Consensus 159 ~~~~~~~~~~ 168 (598)
.+..++++..
T Consensus 101 ~~~e~~~l~~ 110 (345)
T 3f4l_A 101 TLAQAKELFA 110 (345)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555555544
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00058 Score=70.11 Aligned_cols=89 Identities=12% Similarity=0.261 Sum_probs=55.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.+|..++..|.+. .+++++ ++|+++++.+. .|. +
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~--------------------------~~~elvav~d~~~~~~~~--~g~-~------ 53 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREA--------------------------PDFEIAGIVRRNPAEVPF--ELQ-P------ 53 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC--------------------------TTEEEEEEECC---------CCT-T------
T ss_pred CCEEEEECChHHHHHHHHHHhcC--------------------------CCCEEEEEEcCCHHHHHH--cCC-C------
Confidence 46999999999999999988871 567887 68999887654 121 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.....++.+. .++|+||+|+|... -.+.+.+.+..++-|+.+++.
T Consensus 54 -----------~~~~~~l~~~-~~~DvViiatp~~~------------------h~~~~~~al~aG~~Vi~ekP~ 98 (304)
T 3bio_A 54 -----------FRVVSDIEQL-ESVDVALVCSPSRE------------------VERTALEILKKGICTADSFDI 98 (304)
T ss_dssp -----------SCEESSGGGS-SSCCEEEECSCHHH------------------HHHHHHHHHTTTCEEEECCCC
T ss_pred -----------cCCHHHHHhC-CCCCEEEECCCchh------------------hHHHHHHHHHcCCeEEECCCC
Confidence 1123444433 78999999976432 123334556678888877654
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00022 Score=73.98 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=53.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.+|..++..|.. .| +.+++ |.++|+++++.+.+.+..
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~-~~-----------------------~~~~~l~av~d~~~~~a~~~a~~~-------- 49 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQT-LP-----------------------RSEHQVVAVAARDLSRAKEFAQKH-------- 49 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTT-SC-----------------------TTTEEEEEEECSSHHHHHHHHHHH--------
T ss_pred ccEEEEECchHHHHHHHHHHHh-CC-----------------------CCCeEEEEEEcCCHHHHHHHHHHc--------
Confidence 4699999999999999888876 00 01245 456899999988876420
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+--+..+|+++.++ +.|+|+||+|+..
T Consensus 50 ---------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 78 (334)
T 3ohs_X 50 ---------DIPKAYGSYEELAKDPNVEVAYVGTQHPQ 78 (334)
T ss_dssp ---------TCSCEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred ---------CCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence 00135688888887 6899999987653
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0004 Score=72.80 Aligned_cols=73 Identities=10% Similarity=0.210 Sum_probs=51.8
Q ss_pred CCCCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~ 78 (598)
|..+++||+|||+|.+|.. .+..+.. . .+++|+ ++|+++++....-
T Consensus 1 M~m~~~rvgiiG~G~~g~~~~~~~l~~-------------------------~-~~~~l~av~d~~~~~~~~~~------ 48 (358)
T 3gdo_A 1 MSLDTIKVGILGYGLSGSVFHGPLLDV-------------------------L-DEYQISKIMTSRTEEVKRDF------ 48 (358)
T ss_dssp -CTTCEEEEEECCSHHHHHTTHHHHTT-------------------------C-TTEEEEEEECSCHHHHHHHC------
T ss_pred CCCCcceEEEEccCHHHHHHHHHHHhh-------------------------C-CCeEEEEEEcCCHHHHHhhC------
Confidence 4334579999999999997 5666655 0 467765 6799987743211
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
......+|+++.++ +.|+|+||+|+..
T Consensus 49 --------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 77 (358)
T 3gdo_A 49 --------------PDAEVVHELEEITNDPAIELVIVTTPSGL 77 (358)
T ss_dssp --------------TTSEEESSTHHHHTCTTCCEEEECSCTTT
T ss_pred --------------CCCceECCHHHHhcCCCCCEEEEcCCcHH
Confidence 12456788988887 6899999987754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00023 Score=65.01 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=35.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC-HHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS-EERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~-~~~~~~~~ 72 (598)
++|.|+|+|.+|..++..|.+ .|++|+++|++ +++.+.+.
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~---------------------------~g~~V~vid~~~~~~~~~~~ 44 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQ---------------------------RGQNVTVISNLPEDDIKQLE 44 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECCCHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEECCChHHHHHHH
Confidence 589999999999999999999 89999999998 56665554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00024 Score=76.33 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=54.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC--CCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY--EPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~--e~~ 82 (598)
.++|.|+|+|.+|..+|..|.. .|++|+++|.|+++++.+.+...++. ++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~---------------------------~g~~vvvId~d~~~v~~~~~~g~~vi~GDat 56 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS---------------------------SGVKMVVLDHDPDHIETLRKFGMKVFYGDAT 56 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECCHHHHHHHHHTTCCCEESCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEECCHHHHHHHHhCCCeEEEcCCC
Confidence 4789999999999999999999 89999999999999999875333322 111
Q ss_pred hHHHHhhhcCCceEEecCHHHH-hccCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSA-IQKAQLIFISVNT 117 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~adviii~v~t 117 (598)
-.+. +.++ +.+||+||++++.
T Consensus 57 ~~~~--------------L~~agi~~A~~viv~~~~ 78 (413)
T 3l9w_A 57 RMDL--------------LESAGAAKAEVLINAIDD 78 (413)
T ss_dssp CHHH--------------HHHTTTTTCSEEEECCSS
T ss_pred CHHH--------------HHhcCCCccCEEEECCCC
Confidence 1111 2222 6789999999754
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00043 Score=74.27 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=67.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|.++|..|.. .|.+|+++|+++.+.......
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka---------------------------~Ga~Viv~D~~p~~a~~A~~~---------- 253 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRG---------------------------FGARVVVTEVDPINALQAAME---------- 253 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHT----------
T ss_pred CCEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEECCChhhhHHHHHh----------
Confidence 3689999999999999999998 789999999999776544321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
+.. ..++++++++||+|+++.++..- .+ +...+.++++.+|++.+-..
T Consensus 254 ---------G~~-~~sL~eal~~ADVVilt~gt~~i---------I~--------~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 254 ---------GYQ-VLLVEDVVEEAHIFVTTTGNDDI---------IT--------SEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp ---------TCE-ECCHHHHTTTCSEEEECSSCSCS---------BC--------TTTGGGCCTTEEEEECSSSG
T ss_pred ---------CCe-ecCHHHHHhhCCEEEECCCCcCc---------cC--------HHHHhhcCCCcEEEEeCCCC
Confidence 122 24788899999999987654321 11 12345678999999877443
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=74.93 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=69.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..++..|... +...+|.+||++ +.+.+.+.
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~-------------------------~~~~~V~v~~r~--~a~~la~~---------- 163 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSAR-------------------------FALEAILVHDPY--ASPEILER---------- 163 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-------------------------SCCCEEEEECTT--CCHHHHHH----------
T ss_pred CcEEEEECccHHHHHHHHHHHHh-------------------------CCCcEEEEECCc--HHHHHHHH----------
Confidence 46899999999999999999871 135799999999 44444321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+....+...... ++++++++||+||.|+|.+. +-+ . .+.++++++|+..++..|+.
T Consensus 164 --l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~----------pvl---~------~~~l~~G~~V~~vGs~~p~~ 219 (313)
T 3hdj_A 164 --IGRRCGVPARMA-APADIAAQADIVVTATRSTT----------PLF---A------GQALRAGAFVGAIGSSLPHT 219 (313)
T ss_dssp --HHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS----------CSS---C------GGGCCTTCEEEECCCSSTTC
T ss_pred --HHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC----------ccc---C------HHHcCCCcEEEECCCCCCch
Confidence 000001234556 89999999999999976532 111 0 24678999999998887765
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00073 Score=69.69 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=74.4
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeC--CHHHHHH----HHcCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDK--SEERIRQ----WNSNKL 76 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~--~~~~~~~----~~~~~~ 76 (598)
|||+|+|+ |.+|.+++..|+. .| .++.++|+ ++++.+. +....
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~---------------------------~~~~~el~L~Di~~~~~~~~~~~~dl~~~~- 52 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAK---------------------------EPFMKDLVLIGREHSINKLEGLREDIYDAL- 52 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHT---------------------------CTTCCEEEEEECGGGHHHHHHHHHHHHHHH-
T ss_pred CEEEEECCCChhHHHHHHHHHh---------------------------CCCCCEEEEEcCCCchhhhHHHHHHHHHhH-
Confidence 59999999 9999999999988 44 47999999 8766543 22210
Q ss_pred CCCCCChHHHHhhhcCCceEEecC-HHHHhccCcEEEEecCCCCCCCCCCC-CCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 77 PIYEPGLDEVVKKTRDVNLFFSTD-IKSAIQKAQLIFISVNTPTKTFGNGK-GRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 77 ~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~adviii~v~tp~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
++.. ....++.++| ..+++++||+||++...|..+...+. ....+...+++.++.+.++. +.+|++
T Consensus 53 ~~~~----------~~~~i~~~~d~l~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv 120 (313)
T 1hye_A 53 AGTR----------SDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV 120 (313)
T ss_dssp TTSC----------CCCEEEEEETTCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE
T ss_pred HhcC----------CCeEEEeCCcchHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE
Confidence 1100 0123444443 46689999999999877654321100 01123445566666676665 444444
Q ss_pred ecCCchHHHHHHH
Q psy11160 155 KSTVPVRAAESIM 167 (598)
Q Consensus 155 ~STv~~~~~~~~~ 167 (598)
+|-|.+..-.++
T Consensus 121 -~SNPv~~~t~~~ 132 (313)
T 1hye_A 121 -ITNPVDVMTYKA 132 (313)
T ss_dssp -CSSSHHHHHHHH
T ss_pred -ecCcHHHHHHHH
Confidence 567777764444
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.37 E-value=9.8e-05 Score=77.77 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+.|||.|+|+|+||..+|..|++ .++|+++|++.++++.+++...++.-
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~----------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~--- 63 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD----------------------------EFDVYIGDVNNENLEKVKEFATPLKV--- 63 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT----------------------------TSEEEEEESCHHHHHHHTTTSEEEEC---
T ss_pred CccEEEEECCCHHHHHHHHHHhc----------------------------CCCeEEEEcCHHHHHHHhccCCcEEE---
Confidence 35899999999999999998876 47999999999999988754221100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
...-..++.+.++++|+||.|+|.
T Consensus 64 ----------d~~d~~~l~~~~~~~DvVi~~~p~ 87 (365)
T 3abi_A 64 ----------DASNFDKLVEVMKEFELVIGALPG 87 (365)
T ss_dssp ----------CTTCHHHHHHHHTTCSEEEECCCG
T ss_pred ----------ecCCHHHHHHHHhCCCEEEEecCC
Confidence 000012345678999999999864
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0026 Score=68.64 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=53.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||+|||+|.||...+..|.. . .+.+| .++|+++++.+.+.+.
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~-------------------------~-~~~~lvav~d~~~~~~~~~a~~--------- 64 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMAR-------------------------R-DDVEIVAFADPDPYMVGRAQEI--------- 64 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHT-------------------------C-TTEEEEEEECSCHHHHHHHHHH---------
T ss_pred CceEEEEecCHHHHHHHHHHHh-------------------------C-CCcEEEEEEeCCHHHHHHHHHH---------
Confidence 4699999999999998888876 1 46776 4789999998876531
Q ss_pred HHHHhhhcCCceEEec----CHHHHhc--cCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFST----DIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~----~~~~~~~--~adviii~v~tp~ 119 (598)
+.+.--......+ |+++.++ +.|+|+||+|+..
T Consensus 65 ---~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 103 (444)
T 2ixa_A 65 ---LKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEW 103 (444)
T ss_dssp ---HHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCCGGG
T ss_pred ---HHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCCcHH
Confidence 0000000124455 8888887 5899999987653
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00038 Score=71.36 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=70.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|.|||+|.+|.+++..|++ .|. +|++++|++++.+.+.+......
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~---------------------------~G~~~V~v~nR~~~ka~~la~~~~~~~---- 189 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLS---------------------------TAAERIDMANRTVEKAERLVREGDERR---- 189 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TTCSEEEEECSSHHHHHHHHHHSCSSS----
T ss_pred CCEEEEECcHHHHHHHHHHHHH---------------------------CCCCEEEEEeCCHHHHHHHHHHhhhcc----
Confidence 4689999999999999999999 787 99999999999988764210000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.......++.+++.++|+||.|+|.+..+.. ....+. ...++++.+|++.++.|..|
T Consensus 190 ---------~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~----~~~~i~---------~~~l~~~~~v~D~~y~P~~T 246 (297)
T 2egg_A 190 ---------SAYFSLAEAETRLAEYDIIINTTSVGMHPRV----EVQPLS---------LERLRPGVIVSDIIYNPLET 246 (297)
T ss_dssp ---------CCEECHHHHHHTGGGCSEEEECSCTTCSSCC----SCCSSC---------CTTCCTTCEEEECCCSSSSC
T ss_pred ---------CceeeHHHHHhhhccCCEEEECCCCCCCCCC----CCCCCC---------HHHcCCCCEEEEcCCCCCCC
Confidence 0011112455677899999999877643210 000000 12367899999999975544
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0005 Score=72.84 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=54.3
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+| .+|..++..|... .+.+++ ++|+++++.+.+.+.
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~~~a~~-------- 47 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHH--------------------------PDAQIVAACDPNEDVRERFGKE-------- 47 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHC--------------------------TTEEEEEEECSCHHHHHHHHHH--------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC--------------------------CCeEEEEEEeCCHHHHHHHHHH--------
Confidence 4799999999 9999999888871 466665 689999998876531
Q ss_pred hHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~ 119 (598)
-++...+|+++.+++ .|+|+||+|+..
T Consensus 48 ----------~g~~~~~~~~ell~~~~vD~V~i~tp~~~ 76 (387)
T 3moi_A 48 ----------YGIPVFATLAEMMQHVQMDAVYIASPHQF 76 (387)
T ss_dssp ----------HTCCEESSHHHHHHHSCCSEEEECSCGGG
T ss_pred ----------cCCCeECCHHHHHcCCCCCEEEEcCCcHH
Confidence 023356888888874 899999987643
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0021 Score=69.04 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=52.7
Q ss_pred CceEEEECCChhHHHHH--HHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTC--SVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.+ .+.+ ..|+...+.+ ++.+|+++|+++++++....
T Consensus 2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l----------------------~~~el~L~Di~~~~~~~~~~--------- 49 (417)
T 1up7_A 2 HMRIAVIGGGSS-YTPELVKGLLDISEDV----------------------RIDEVIFYDIDEEKQKIVVD--------- 49 (417)
T ss_dssp CCEEEEETTTCT-THHHHHHHHHHHTTTS----------------------CCCEEEEECSCHHHHHHHHH---------
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhcccCC----------------------CcCEEEEEeCCHHHHHHHHH---------
Confidence 479999999997 3322 2333300011 36799999999999775331
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
+...+.... .+++.++|+.+++++||+||++...+.
T Consensus 50 ~~~~~~~~~-~~v~~t~d~~~al~~AD~Viitagvg~ 85 (417)
T 1up7_A 50 FVKRLVKDR-FKVLISDTFEGAVVDAKYVIFQFRPGG 85 (417)
T ss_dssp HHHHHHTTS-SEEEECSSHHHHHTTCSEEEECCCTTH
T ss_pred HHHHHhhCC-eEEEEeCCHHHHhCCCCEEEEcCCCCC
Confidence 111111111 357778898889999999999986653
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0028 Score=69.13 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=54.4
Q ss_pred ceEEEECCChhHHHHHH--HHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCS--VIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.+|.+... .++. .+. +.+.+.+|+++|+++++++.... .+
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~-~~~--------------------l~~~~~ei~L~Di~~~rl~~~~~--------~~ 51 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQ-TDE--------------------LSREDTHIYLMDVHERRLNASYI--------LA 51 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-CTT--------------------TCSTTCEEEEECSCHHHHHHHHH--------HH
T ss_pred CEEEEECCCchhhHHHHHHHHHh-hHh--------------------cCCCCCEEEEECCCHHHHHHHHH--------HH
Confidence 69999999999876432 2443 111 11134589999999998875331 01
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecC
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..+.... .+.++..|+|+++|+++||+||+++.
T Consensus 52 ~~~~~~~~~~~~i~~t~d~~eAl~gAD~Vi~~~g 85 (477)
T 3u95_A 52 RKYVEELNSPVKVVKTESLDEAIEGADFIINTAY 85 (477)
T ss_dssp HHHHHHHTCCCEEEEESCHHHHHTTCSEEEECCC
T ss_pred HHHHHHcCCCeEEEEeCCHHHHhCCCCEEEECcc
Confidence 1122221 23468889999999999999999974
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00076 Score=71.42 Aligned_cols=100 Identities=20% Similarity=0.268 Sum_probs=68.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~ 83 (598)
..+|+|||+|.+|..+|..+.. .|.+|+++|+++++.+.+.+ ....+.
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~---------------------------~Ga~V~~~d~~~~~l~~~~~~~g~~~~---- 216 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANG---------------------------MGATVTVLDINIDKLRQLDAEFCGRIH---- 216 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHHTTTSSE----
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEeCCHHHHHHHHHhcCCeeE----
Confidence 3689999999999999999988 78899999999999887764 211100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
....-..++.+.++.+|+||.|++.|... .+.+ +.+...+.++++.++|+.|
T Consensus 217 ---------~~~~~~~~l~~~l~~aDvVi~~~~~p~~~-------t~~l-----i~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 217 ---------TRYSSAYELEGAVKRADLVIGAVLVPGAK-------APKL-----VSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp ---------EEECCHHHHHHHHHHCSEEEECCCCTTSC-------CCCC-----BCHHHHTTSCTTCEEEEGG
T ss_pred ---------eccCCHHHHHHHHcCCCEEEECCCcCCCC-------Ccce-----ecHHHHhcCCCCcEEEEEe
Confidence 00000123556778999999998776421 0111 1234456678899998876
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0004 Score=69.63 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=65.6
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+|+|||+|-+|.+++..|++ .|. +|++++|++++.+.+.+..
T Consensus 110 ~vliiGaGg~a~ai~~~L~~---------------------------~G~~~I~v~nR~~~ka~~la~~~---------- 152 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQ---------------------------MGVKDIWVVNRTIERAKALDFPV---------- 152 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHH---------------------------TTCCCEEEEESCHHHHHTCCSSC----------
T ss_pred eEEEECcHHHHHHHHHHHHH---------------------------cCCCEEEEEeCCHHHHHHHHHHc----------
Confidence 89999999999999999999 787 9999999999988765321
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+.....+..++++++|+||.|+|....++. ..+. ...++++++|++....
T Consensus 153 --------~~~~~~~~~~~~~~aDiVInatp~gm~p~~------~~i~---------~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 153 --------KIFSLDQLDEVVKKAKSLFNTTSVGMKGEE------LPVS---------DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp --------EEEEGGGHHHHHHTCSEEEECSSTTTTSCC------CSCC---------HHHHTTCSEEEECSSS
T ss_pred --------ccCCHHHHHhhhcCCCEEEECCCCCCCCCC------CCCC---------HHHhCcCCEEEEeeCC
Confidence 112234566778999999999875432210 1110 1234678888876655
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00067 Score=68.73 Aligned_cols=166 Identities=12% Similarity=0.105 Sum_probs=94.7
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~ 78 (598)
|-.+.|||+|+|+ |.||..++..+... .|++++ ++|+++++.. +...-
T Consensus 1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~--------------------------~~~elva~~d~~~~~~~----g~d~~ 50 (273)
T 1dih_A 1 MHDANIRVAIAGAGGRMGRQLIQAALAL--------------------------EGVQLGAALEREGSSLL----GSDAG 50 (273)
T ss_dssp -CCCBEEEEETTTTSHHHHHHHHHHHHS--------------------------TTEECCCEECCTTCTTC----SCCTT
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHHHhC--------------------------CCCEEEEEEecCchhhh----hhhHH
Confidence 4445689999999 99999999988761 678877 6787653321 10000
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
..-++. ..++..++|++++++++|+||-++ +|. ...+.+...+..+.-+|..+|
T Consensus 51 ~~~g~~-------~~~v~~~~dl~~~l~~~DvVIDft-~p~-----------------~~~~~~~~a~~~G~~vVigTt- 104 (273)
T 1dih_A 51 ELAGAG-------KTGVTVQSSLDAVKDDFDVFIDFT-RPE-----------------GTLNHLAFCRQHGKGMVIGTT- 104 (273)
T ss_dssp CSSSSS-------CCSCCEESCSTTTTTSCSEEEECS-CHH-----------------HHHHHHHHHHHTTCEEEECCC-
T ss_pred HHcCCC-------cCCceecCCHHHHhcCCCEEEEcC-ChH-----------------HHHHHHHHHHhCCCCEEEECC-
Confidence 000000 013445677877788999999564 231 122333344456666777666
Q ss_pred chHHHHHHHHHHhhccCCcccccCCCCCch----HHHHHHHHHHHHhcCC-ceEEEec------cccchhhhhHHHHHh
Q psy11160 159 PVRAAESIMNVLKANHKTNVQFQGRAADLK----YVEAAARMIAEIATDN-KIVVEKS------TVPVRAAESIMNVLK 226 (598)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~----~l~~A~~~Ia~~l~~~-~lvv~eS------TvP~gtt~~~~~~L~ 226 (598)
|.+.+-...+...++..+.. ..+++| .+-...+..++.+.++ ++-|+|+ -.|-||.-.+.+.+.
T Consensus 105 --G~~~e~~~~L~~~a~~~~vv--~a~N~siGvn~~~~l~~~aa~~~~~~~dieiiE~Hh~~K~DaPSGTA~~~ae~i~ 179 (273)
T 1dih_A 105 --GFDEAGKQAIRDAAADIAIV--FAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIA 179 (273)
T ss_dssp --CCCHHHHHHHHHHTTTSCEE--ECSCCCHHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHhcCCCCEE--EEecCcHHHHHHHHHHHHHHHhcCCCCCEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 22222233344444444422 123222 3566667777777644 7777776 368899877666553
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00048 Score=65.86 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=64.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||.|+|+ |++|..++..|++ .|++|++++|++++.+.+..+. .+..-++.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~~~~~~~~-~~~~~D~~ 52 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKN---------------------------RGHEVTAIVRNAGKITQTHKDI-NILQKDIF 52 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCSHHHHHHCSSS-EEEECCGG
T ss_pred CeEEEEcCCchhHHHHHHHHHh---------------------------CCCEEEEEEcCchhhhhccCCC-eEEecccc
Confidence 58999995 9999999999999 8999999999998887764221 11111110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
- .+. +++.++|+||.+.+.+... ...++.....+++...+ .....+|+.+|+.
T Consensus 53 ------------d-~~~-~~~~~~d~vi~~ag~~~~~------~~~~~~~~~~l~~a~~~-~~~~~~v~~SS~~ 105 (221)
T 3ew7_A 53 ------------D-LTL-SDLSDQNVVVDAYGISPDE------AEKHVTSLDHLISVLNG-TVSPRLLVVGGAA 105 (221)
T ss_dssp ------------G-CCH-HHHTTCSEEEECCCSSTTT------TTSHHHHHHHHHHHHCS-CCSSEEEEECCCC
T ss_pred ------------C-hhh-hhhcCCCEEEECCcCCccc------cchHHHHHHHHHHHHHh-cCCceEEEEecce
Confidence 0 011 5788999999998664321 12233333333332221 1234667776654
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00056 Score=72.72 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=53.3
Q ss_pred CceEEEECCCh---hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE--EEeCCHHHHHHHHcCCCCCC
Q psy11160 5 ISHICCIGAGY---VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT--VVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 5 ~~~I~viG~G~---vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~~d~~~~~~~~~~~~~~~~~ 79 (598)
..||+|||+|. ||...+..+... .+++++ ++|+++++.+.+.+...
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~--------------------------~~~~lva~v~d~~~~~a~~~a~~~g--- 62 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRD--------------------------NTFVLVAGAFDIDPIRGSAFGEQLG--- 62 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGG--------------------------GSEEEEEEECCSSHHHHHHHHHHTT---
T ss_pred cceEEEEcCCccchhHHHHHHHHhhC--------------------------CCeEEEEEEeCCCHHHHHHHHHHhC---
Confidence 36899999999 999988887761 347776 47999999988764210
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhcc-------CcEEEEecCCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQK-------AQLIFISVNTPT 119 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------adviii~v~tp~ 119 (598)
+ ...+..+|+++.+++ .|+|+||+|+..
T Consensus 63 ---~---------~~~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~ 97 (398)
T 3dty_A 63 ---V---------DSERCYADYLSMFEQEARRADGIQAVSIATPNGT 97 (398)
T ss_dssp ---C---------CGGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGG
T ss_pred ---C---------CcceeeCCHHHHHhcccccCCCCCEEEECCCcHH
Confidence 0 001345778877764 899999987654
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00054 Score=71.98 Aligned_cols=70 Identities=6% Similarity=0.046 Sum_probs=52.6
Q ss_pred CceEEEECCChhHH-HHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGG-PTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~-~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+.||+|||+|.+|. .++..+.. .+.+|+ ++|+++++.+.+.+..
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~---------------------------~~~~lvav~d~~~~~a~~~a~~~------- 71 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLR---------------------------AGARLAGFHEKDDALAAEFSAVY------- 71 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHH---------------------------TTCEEEEEECSCHHHHHHHHHHS-------
T ss_pred CcEEEEECcCHHHHHHHHHHhhc---------------------------CCcEEEEEEcCCHHHHHHHHHHc-------
Confidence 36899999999995 56666666 677754 6899999998876421
Q ss_pred hHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp 118 (598)
+.....+|+++.+++ .|+|+||+|+.
T Consensus 72 ----------~~~~~~~~~~~ll~~~~vD~V~I~tp~~ 99 (361)
T 3u3x_A 72 ----------ADARRIATAEEILEDENIGLIVSAAVSS 99 (361)
T ss_dssp ----------SSCCEESCHHHHHTCTTCCEEEECCCHH
T ss_pred ----------CCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 113467889888875 89999997654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=69.36 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=66.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++++|||+|.+|..+|..+.. .|.+|+++|+++.+.......
T Consensus 247 GKTVgVIG~G~IGr~vA~~lra---------------------------fGa~Viv~d~dp~~a~~A~~~---------- 289 (464)
T 3n58_A 247 GKVAVVCGYGDVGKGSAQSLAG---------------------------AGARVKVTEVDPICALQAAMD---------- 289 (464)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSHHHHHHHHHT----------
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEEeCCcchhhHHHhc----------
Confidence 3689999999999999999988 789999999998765443211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+... .+++++++.||+|+.+++++- ..+ +...+.++++.++++.+-.
T Consensus 290 ---------G~~v-v~LeElL~~ADIVv~atgt~~---------lI~--------~e~l~~MK~GAILINvGRg 336 (464)
T 3n58_A 290 ---------GFEV-VTLDDAASTADIVVTTTGNKD---------VIT--------IDHMRKMKDMCIVGNIGHF 336 (464)
T ss_dssp ---------TCEE-CCHHHHGGGCSEEEECCSSSS---------SBC--------HHHHHHSCTTEEEEECSSS
T ss_pred ---------Ccee-ccHHHHHhhCCEEEECCCCcc---------ccC--------HHHHhcCCCCeEEEEcCCC
Confidence 1222 467889999999998865431 111 2345678999999986554
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00036 Score=73.22 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=51.0
Q ss_pred CCCCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~ 78 (598)
|..+++||+|||+|.+|.. .+..+... .+.+|+ ++|++++++. +. .
T Consensus 1 M~~~~~rvgiiG~G~~g~~~~~~~l~~~--------------------------~~~~l~av~d~~~~~~~---~~-~-- 48 (362)
T 3fhl_A 1 MSLEIIKTGLAAFGMSGQVFHAPFISTN--------------------------PHFELYKIVERSKELSK---ER-Y-- 48 (362)
T ss_dssp --CCCEEEEESCCSHHHHHTTHHHHHHC--------------------------TTEEEEEEECSSCCGGG---TT-C--
T ss_pred CCCCceEEEEECCCHHHHHHHHHHHhhC--------------------------CCeEEEEEEcCCHHHHH---Hh-C--
Confidence 5555679999999999997 67677661 467765 6788876521 11 0
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPT 119 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~ 119 (598)
......+|+++.+++ .|+|+||+|+..
T Consensus 49 --------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 77 (362)
T 3fhl_A 49 --------------PQASIVRSFKELTEDPEIDLIVVNTPDNT 77 (362)
T ss_dssp --------------TTSEEESCSHHHHTCTTCCEEEECSCGGG
T ss_pred --------------CCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence 134567889888876 899999987653
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00054 Score=73.89 Aligned_cols=76 Identities=9% Similarity=0.081 Sum_probs=53.3
Q ss_pred CceEEEECCChhHH-HHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGG-PTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~-~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.||. .++..|... .++++ .++|+++++.+.+.+... +.
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~--------------------------~~~~lvav~d~~~~~~~~~a~~~g-~~--- 132 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGC--------------------------QHSRIEALVSGNAEKAKIVAAEYG-VD--- 132 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTC--------------------------SSEEEEEEECSCHHHHHHHHHHTT-CC---
T ss_pred ceEEEEECCcHHHHHHHHHHHhhC--------------------------CCcEEEEEEcCCHHHHHHHHHHhC-CC---
Confidence 46999999999997 888877660 35675 588999999887654210 00
Q ss_pred hHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
.......+|+++.++ ++|+|+||+|+..
T Consensus 133 ---------~~~~~~~~~~~~ll~~~~vD~V~iatp~~~ 162 (433)
T 1h6d_A 133 ---------PRKIYDYSNFDKIAKDPKIDAVYIILPNSL 162 (433)
T ss_dssp ---------GGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred ---------cccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence 011345677887776 6899999987643
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=68.53 Aligned_cols=74 Identities=5% Similarity=0.060 Sum_probs=54.7
Q ss_pred CCceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+..||+|||+| .+|...+..|.. .+.+.++ .++|+++++.+.+.+..
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~-------------------------~~~~~~lvav~d~~~~~~~~~a~~~------ 65 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKN-------------------------LSHLFEITAVTSRTRSHAEEFAKMV------ 65 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHT-------------------------TTTTEEEEEEECSSHHHHHHHHHHH------
T ss_pred CceeEEEEecCHHHHHHHHHHHHh-------------------------CCCceEEEEEEcCCHHHHHHHHHHh------
Confidence 35689999999 899999888877 1124665 57899999998766420
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+.....+|+++.++ +.|+|+||+|+..
T Consensus 66 -----------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 94 (340)
T 1zh8_A 66 -----------GNPAVFDSYEELLESGLVDAVDLTLPVEL 94 (340)
T ss_dssp -----------SSCEEESCHHHHHHSSCCSEEEECCCGGG
T ss_pred -----------CCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 11256788988886 5899999976643
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=69.71 Aligned_cols=40 Identities=8% Similarity=0.040 Sum_probs=36.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.++|.|+|+|.+|..+|..|.+ .|+ |+++|+++++++.+.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~---------------------------~g~-v~vid~~~~~~~~~~ 48 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRG---------------------------SEV-FVLAEDENVRKKVLR 48 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTT---------------------------SEE-EEEESCGGGHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHh---------------------------CCe-EEEEECCHHHHHHHh
Confidence 4789999999999999999988 789 999999999998876
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00018 Score=69.42 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=63.8
Q ss_pred CCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 2 VQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 2 ~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
|+++|+|.|.|+ |++|..++..|.+ .|++|+++++++++.+.+..+. .+.
T Consensus 1 M~~m~~ilItGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~-~~~- 51 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALN---------------------------RGFEVTAVVRHPEKIKIENEHL-KVK- 51 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHT---------------------------TTCEEEEECSCGGGCCCCCTTE-EEE-
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHH---------------------------CCCEEEEEEcCcccchhccCce-EEE-
Confidence 345689999995 9999999999999 8999999999977653221110 000
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
...+.-..+..++++++|+||.+.+...... .....++.....+++.+.+. ....+|..+|+
T Consensus 52 -----------~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~---~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~ 113 (227)
T 3dhn_A 52 -----------KADVSSLDEVCEVCKGADAVISAFNPGWNNP---DIYDETIKVYLTIIDGVKKA-GVNRFLMVGGA 113 (227)
T ss_dssp -----------CCCTTCHHHHHHHHTTCSEEEECCCC---------CCSHHHHHHHHHHHHHHHT-TCSEEEEECCS
T ss_pred -----------EecCCCHHHHHHHhcCCCEEEEeCcCCCCCh---hHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCh
Confidence 0111111234567889999999875432110 01222444455555544432 23355555544
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00062 Score=68.09 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=38.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+|||.|.|+|++|..++..|.+ .|++|+++++++++.+.+..
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~ 46 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAP---------------------------QGWRIIGTSRNPDQMEAIRA 46 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGG---------------------------GTCEEEEEESCGGGHHHHHH
T ss_pred cCcEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEEcChhhhhhHhh
Confidence 4799999999999999999999 79999999999988877654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00047 Score=74.42 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=54.6
Q ss_pred CceEEEECC----ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCC
Q psy11160 5 ISHICCIGA----GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 5 ~~~I~viG~----G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~ 79 (598)
.+||+|||+ |.+|..++..|.. ...+++| .++|+++++.+.+.+... +
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~-------------------------~~~~~~lvav~d~~~~~~~~~a~~~g-~- 72 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQ-------------------------LSSQFQITALYSPKIETSIATIQRLK-L- 72 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHH-------------------------TTTTEEEEEEECSSHHHHHHHHHHTT-C-
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHh-------------------------cCCCeEEEEEEeCCHHHHHHHHHHcC-C-
Confidence 468999999 9999999999988 1025675 578999999887664210 0
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
...+..+|+++.++ +.|+|+||+|+.
T Consensus 73 -------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 100 (438)
T 3btv_A 73 -------------SNATAFPTLESFASSSTIDMIVIAIQVA 100 (438)
T ss_dssp -------------TTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred -------------CcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence 11346788988886 589999997654
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0029 Score=66.65 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=68.3
Q ss_pred CCCCCceEEEEC-CChhHHH-HH----HHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC
Q psy11160 1 MVQTISHICCIG-AGYVGGP-TC----SVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN 74 (598)
Q Consensus 1 m~~~~~~I~viG-~G~vG~~-~a----~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~ 74 (598)
|..+.+||+||| +|.||.. .+ ..+.. .+++.+. +.. . ...++.++|+++++.+.+.+.
T Consensus 2 ~~~~~irigiiG~~G~~g~~~h~~~~~~~~~~-~~~~~l~--~~~--------~-----~~~~~av~~~~~~~a~~~a~~ 65 (383)
T 3oqb_A 2 LTTQRLGLIMNGVTGRMGLNQHLIRSIVAIRD-QGGVRLK--NGD--------R-----IMPDPILVGRSAEKVEALAKR 65 (383)
T ss_dssp -CCEEEEEEEESTTSTHHHHTTTTTTHHHHHH-HTSEECT--TSC--------E-----EEEEEEEECSSSHHHHHHHHH
T ss_pred CCCceeEEEEEeccchhhhhhhHHHHHHHHhh-cCceeec--CCc--------c-----cceeeEEEcCCHHHHHHHHHH
Confidence 334457999999 9999997 66 66665 1111100 000 0 012335999999999887642
Q ss_pred CCCCCCCChHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE
Q psy11160 75 KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152 (598)
Q Consensus 75 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv 152 (598)
. +--..++|+++.+++ .|+|+||+|+... .+.+...+..|+-|
T Consensus 66 ~-----------------~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h------------------~~~~~~al~~Gk~V 110 (383)
T 3oqb_A 66 F-----------------NIARWTTDLDAALADKNDTMFFDAATTQAR------------------PGLLTQAINAGKHV 110 (383)
T ss_dssp T-----------------TCCCEESCHHHHHHCSSCCEEEECSCSSSS------------------HHHHHHHHTTTCEE
T ss_pred h-----------------CCCcccCCHHHHhcCCCCCEEEECCCchHH------------------HHHHHHHHHCCCeE
Confidence 1 001356888888865 8999999876543 12333445667766
Q ss_pred EEecC--CchHHHHHHHH
Q psy11160 153 VEKST--VPVRAAESIMN 168 (598)
Q Consensus 153 v~~ST--v~~~~~~~~~~ 168 (598)
+.+-. .....++++..
T Consensus 111 ~~EKP~a~~~~~~~~l~~ 128 (383)
T 3oqb_A 111 YCEKPIATNFEEALEVVK 128 (383)
T ss_dssp EECSCSCSSHHHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHH
Confidence 66543 34444444443
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0026 Score=68.18 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=65.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|+|+|.+|..+|..+.. .|.+|+++|+++.+.......
T Consensus 220 GktV~ViG~G~IGk~vA~~Lra---------------------------~Ga~Viv~D~dp~ra~~A~~~---------- 262 (435)
T 3gvp_A 220 GKQVVVCGYGEVGKGCCAALKA---------------------------MGSIVYVTEIDPICALQACMD---------- 262 (435)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHT----------
T ss_pred CCEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEEeCChhhhHHHHHc----------
Confidence 3689999999999999999988 788999999999765543321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+.. ..+++++++.||+|++|..++. ..+ +...+.++++.+|++.+--
T Consensus 263 ---------G~~-v~~Leeal~~ADIVi~atgt~~---------lI~--------~e~l~~MK~gailINvgrg 309 (435)
T 3gvp_A 263 ---------GFR-LVKLNEVIRQVDIVITCTGNKN---------VVT--------REHLDRMKNSCIVCNMGHS 309 (435)
T ss_dssp ---------TCE-ECCHHHHTTTCSEEEECSSCSC---------SBC--------HHHHHHSCTTEEEEECSST
T ss_pred ---------CCE-eccHHHHHhcCCEEEECCCCcc---------cCC--------HHHHHhcCCCcEEEEecCC
Confidence 122 2467889999999999844331 111 2344568899999986654
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0013 Score=70.51 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=51.8
Q ss_pred ceEEEECCCh---hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE--EEeCCHHHHHHHHcCC-CCCC
Q psy11160 6 SHICCIGAGY---VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT--VVDKSEERIRQWNSNK-LPIY 79 (598)
Q Consensus 6 ~~I~viG~G~---vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~~d~~~~~~~~~~~~~-~~~~ 79 (598)
+||+|||+|. +|...+..+... .+++++ ++|+++++.+.+.+.. .+
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~--------------------------~~~~lva~v~d~~~~~a~~~a~~~g~~-- 89 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD--------------------------DHYELVAGALSSTPEKAEASGRELGLD-- 89 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT--------------------------SCEEEEEEECCSSHHHHHHHHHHHTCC--
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC--------------------------CCcEEEEEEeCCCHHHHHHHHHHcCCC--
Confidence 5899999998 999988887761 346775 5799999988776420 00
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhcc-------CcEEEEecCCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQK-------AQLIFISVNTPT 119 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------adviii~v~tp~ 119 (598)
..+..+|+++.+++ .|+|+||+|+..
T Consensus 90 --------------~~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~ 122 (417)
T 3v5n_A 90 --------------PSRVYSDFKEMAIREAKLKNGIEAVAIVTPNHV 122 (417)
T ss_dssp --------------GGGBCSCHHHHHHHHHHCTTCCSEEEECSCTTS
T ss_pred --------------cccccCCHHHHHhcccccCCCCcEEEECCCcHH
Confidence 01345778877765 899999987764
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00095 Score=72.60 Aligned_cols=43 Identities=33% Similarity=0.528 Sum_probs=39.8
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
..|||.|+|+|.+|..+|..|.. .||+|+++|.|+++++.+.+
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~---------------------------~~~~v~vId~d~~~~~~~~~ 44 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVG---------------------------ENNDITIVDKDGDRLRELQD 44 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCS---------------------------TTEEEEEEESCHHHHHHHHH
T ss_pred CcCEEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEECCHHHHHHHHH
Confidence 35899999999999999999998 89999999999999998874
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.002 Score=64.05 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=88.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|+||+|+|+|.||..++..+.. .++++++ +|++++. .
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~---------------------------~~~eLva~~d~~~~~-----~---------- 40 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEE---------------------------KGHEIVGVIENTPKA-----T---------- 40 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEECSSCC-----------------
T ss_pred ceEEEEECcCHHHHHHHHHHHh---------------------------CCCEEEEEEecCccc-----c----------
Confidence 5899999999999999999988 4447665 7887542 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.+...++|+++.+ ++|++|-.. +|. .+. +.+ + +..+.-+|+.||- .+
T Consensus 41 ---------~gv~v~~dl~~l~-~~DVvIDft-~p~--------------a~~---~~~-~-l~~g~~vVigTTG---~s 87 (243)
T 3qy9_A 41 ---------TPYQQYQHIADVK-GADVAIDFS-NPN--------------LLF---PLL-D-EDFHLPLVVATTG---EK 87 (243)
T ss_dssp ---------CCSCBCSCTTTCT-TCSEEEECS-CHH--------------HHH---HHH-T-SCCCCCEEECCCS---SH
T ss_pred ---------CCCceeCCHHHHh-CCCEEEEeC-ChH--------------HHH---HHH-H-HhcCCceEeCCCC---CC
Confidence 1223456666666 899987443 221 122 222 3 6667666666663 33
Q ss_pred HHHHHHHhhccCCcccccCCCCCch----HHHHHHHHHHHHhcCCceEEEec------cccchhhhhHHHHH
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLK----YVEAAARMIAEIATDNKIVVEKS------TVPVRAAESIMNVL 225 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~----~l~~A~~~Ia~~l~~~~lvv~eS------TvP~gtt~~~~~~L 225 (598)
++-...+.+.++..+.. ..|++| -+-...+..++.+.+-++-|+|. -.|-||.-.+.+.+
T Consensus 88 ~e~~~~l~~aa~~~~v~--~a~N~S~Gv~l~~~~~~~aa~~l~~~dieI~E~HH~~K~DaPSGTA~~la~~i 157 (243)
T 3qy9_A 88 EKLLNKLDELSQNMPVF--FSANMSYGVHALTKILAAAVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVI 157 (243)
T ss_dssp HHHHHHHHHHTTTSEEE--ECSSCCHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEE--EECCccHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCHHHHHHHHHH
Confidence 33333344455554443 233433 34455666677777667778776 35889988777766
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00018 Score=73.11 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=67.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+++.|+|+|-+|.+++..|++ .|. +|++++|++++.+.+....
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~---------------------------~G~~~v~v~~R~~~~a~~la~~~-------- 161 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYK---------------------------IVRPTLTVANRTMSRFNNWSLNI-------- 161 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHT---------------------------TCCSCCEEECSCGGGGTTCCSCC--------
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEeCCHHHHHHHHHhc--------
Confidence 3689999999999999999999 787 9999999998876654321
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
......++.+++.++|+||-|+|....++. ..+ + -...++++.+|++.++.|..|
T Consensus 162 ----------~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~----~~~----l------~~~~l~~~~~V~D~vY~P~~T 216 (277)
T 3don_A 162 ----------NKINLSHAESHLDEFDIIINTTPAGMNGNT----DSV----I------SLNRLASHTLVSDIVYNPYKT 216 (277)
T ss_dssp ----------EEECHHHHHHTGGGCSEEEECCC-----------CCS----S------CCTTCCSSCEEEESCCSSSSC
T ss_pred ----------ccccHhhHHHHhcCCCEEEECccCCCCCCC----cCC----C------CHHHcCCCCEEEEecCCCCCC
Confidence 111123455568899999999765432110 000 0 023467899999999987665
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00072 Score=72.10 Aligned_cols=80 Identities=11% Similarity=0.173 Sum_probs=54.3
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHh---CCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALK---CPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLP 77 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~ 77 (598)
|++..||+|||+|.+|...+..+.+- .|+. ..+.+|+ ++|+++++.+.+.+..
T Consensus 23 Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~---------------------~~~~elvav~d~~~~~a~~~a~~~-- 79 (412)
T 4gqa_A 23 MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDL---------------------PKRPHLYALADQDQAMAERHAAKL-- 79 (412)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHHHHHCTTS---------------------SSEEEEEEEECSSHHHHHHHHHHH--
T ss_pred ccccceEEEEcCcHHHHHHHHHHHhcccccccc---------------------CCCeEEEEEEcCCHHHHHHHHHHc--
Confidence 34456899999999999888888750 0000 0234555 6799999998876421
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+..++.+|+++.++ +.|+|+||+|+..
T Consensus 80 ---------------~~~~~y~d~~~ll~~~~vD~V~I~tp~~~ 108 (412)
T 4gqa_A 80 ---------------GAEKAYGDWRELVNDPQVDVVDITSPNHL 108 (412)
T ss_dssp ---------------TCSEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred ---------------CCCeEECCHHHHhcCCCCCEEEECCCcHH
Confidence 11256788998886 5799999977654
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00081 Score=73.50 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=54.6
Q ss_pred CceEEEECC----ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCC
Q psy11160 5 ISHICCIGA----GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 5 ~~~I~viG~----G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~ 79 (598)
++||+|||+ |.+|...+..|.. ...+++| .++|+++++.+.+.+... +
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~-------------------------~~~~~~lvav~d~~~~~a~~~a~~~g-~- 91 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQ-------------------------LSSQFQIVALYNPTLKSSLQTIEQLQ-L- 91 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHH-------------------------TTTTEEEEEEECSCHHHHHHHHHHTT-C-
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHh-------------------------cCCCeEEEEEEeCCHHHHHHHHHHcC-C-
Confidence 368999999 9999999999987 1025675 478999999887764210 0
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
...+..+|+++.++ +.|+|+||+|+.
T Consensus 92 -------------~~~~~~~d~~ell~~~~vD~V~I~tp~~ 119 (479)
T 2nvw_A 92 -------------KHATGFDSLESFAQYKDIDMIVVSVKVP 119 (479)
T ss_dssp -------------TTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred -------------CcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence 11346788988885 689999997654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00061 Score=71.88 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=65.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
++|+|+|+|.+|..+|..++. .|.+|+++|+++++.+.+.+ ....+.
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~---------------------------~Ga~V~~~d~~~~~~~~~~~~~g~~~~----- 214 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALG---------------------------MGAQVTILDVNHKRLQYLDDVFGGRVI----- 214 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHHTTTSEE-----
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHhcCceEE-----
Confidence 689999999999999999998 78999999999999887653 211100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
....-..+..+.++.+|+||.|++.+... .+. -+.+...+.++++.++|+.|....
T Consensus 215 --------~~~~~~~~l~~~~~~~DvVi~~~g~~~~~-------~~~-----li~~~~l~~mk~gg~iV~v~~~~g 270 (369)
T 2eez_A 215 --------TLTATEANIKKSVQHADLLIGAVLVPGAK-------APK-----LVTRDMLSLMKEGAVIVDVAVDQG 270 (369)
T ss_dssp --------EEECCHHHHHHHHHHCSEEEECCC--------------C-----CSCHHHHTTSCTTCEEEECC----
T ss_pred --------EecCCHHHHHHHHhCCCEEEECCCCCccc-------cch-----hHHHHHHHhhcCCCEEEEEecCCC
Confidence 00000123556778999999998765310 000 012344566788888888775443
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.004 Score=64.86 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=67.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++++|||+|.+|..+|..+.. -|.+|++||+....... ..
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~---------------------------fg~~v~~~d~~~~~~~~-~~------------ 181 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLA---------------------------FGMKVLCYDVVKREDLK-EK------------ 181 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCHHHH-HT------------
T ss_pred cEEEEECcchHHHHHHHhhcc---------------------------cCceeeecCCccchhhh-hc------------
Confidence 589999999999999999888 68999999986432211 11
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
+.. ..++++.+++||+|++++|--..+. +..+ +.....++++.++|+.|--..=..+.
T Consensus 182 --------~~~-~~~l~ell~~sDivslh~Plt~~T~-----~li~--------~~~l~~mk~~a~lIN~aRG~iVde~a 239 (334)
T 3kb6_A 182 --------GCV-YTSLDELLKESDVISLHVPYTKETH-----HMIN--------EERISLMKDGVYLINTARGKVVDTDA 239 (334)
T ss_dssp --------TCE-ECCHHHHHHHCSEEEECCCCCTTTT-----TCBC--------HHHHHHSCTTEEEEECSCGGGBCHHH
T ss_pred --------Cce-ecCHHHHHhhCCEEEEcCCCChhhc-----cCcC--------HHHHhhcCCCeEEEecCccccccHHH
Confidence 122 2467889999999999987433221 1223 23445789999999876554433333
Q ss_pred H
Q psy11160 166 I 166 (598)
Q Consensus 166 ~ 166 (598)
+
T Consensus 240 L 240 (334)
T 3kb6_A 240 L 240 (334)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.002 Score=61.77 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=52.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||.|.|+ |++|..++..|++ .|++|+++++++++.+.+......+..-++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~ 53 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARR---------------------------RGHEVLAVVRDPQKAADRLGATVATLVKEPL 53 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHTCTTSEEEECCGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHH---------------------------CCCEEEEEEecccccccccCCCceEEecccc
Confidence 58999998 9999999999999 8999999999999988764321111111110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+ .+. +++.++|+||-+....
T Consensus 54 d-------------~~~-~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 54 V-------------LTE-ADLDSVDAVVDALSVP 73 (224)
T ss_dssp G-------------CCH-HHHTTCSEEEECCCCC
T ss_pred c-------------ccH-hhcccCCEEEECCccC
Confidence 0 011 5788999999998653
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=70.41 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=65.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCC-CC--
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIY-EP-- 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~-e~-- 81 (598)
.+|+|||+|.+|..++..+.. .|.+|+++|+++++.+.+.+ |...+. +.
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~---------------------------~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~ 225 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANS---------------------------LGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE 225 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCGGGHHHHHHTTCEECCC----
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHHcCCEEEEecccc
Confidence 589999999999999999888 78899999999988877654 211110 00
Q ss_pred ------ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 82 ------GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 82 ------~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
|........... ....++.+.+..+|+||.++..|... .+.+ + .+...+.++++.+||+.
T Consensus 226 ~~~~~~g~~~~~~~~~~~--~~~~~l~e~~~~aDvVI~~~~~pg~~-------ap~l--i---~~~~l~~mk~g~vIVdv 291 (401)
T 1x13_A 226 EAGSGDGYAKVMSDAFIK--AEMELFAAQAKEVDIIVTTALIPGKP-------APKL--I---TREMVDSMKAGSVIVDL 291 (401)
T ss_dssp ----CCHHHHHHSHHHHH--HHHHHHHHHHHHCSEEEECCCCTTSC-------CCCC--B---CHHHHHTSCTTCEEEET
T ss_pred cccccccchhhccHHHHH--HHHHHHHHHhCCCCEEEECCccCCCC-------CCee--e---CHHHHhcCCCCcEEEEE
Confidence 000000000000 00012456778999999996444211 0110 1 12344567899999987
Q ss_pred cC
Q psy11160 156 ST 157 (598)
Q Consensus 156 ST 157 (598)
+.
T Consensus 292 a~ 293 (401)
T 1x13_A 292 AA 293 (401)
T ss_dssp TG
T ss_pred cC
Confidence 65
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.002 Score=61.91 Aligned_cols=101 Identities=11% Similarity=0.249 Sum_probs=62.7
Q ss_pred Cce-EEEEC-CChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHH-cC-CCCC
Q psy11160 5 ISH-ICCIG-AGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWN-SN-KLPI 78 (598)
Q Consensus 5 ~~~-I~viG-~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~-~~-~~~~ 78 (598)
||| |.|.| .|.+|..++..|+ + .|++|++++++++ +.+.+. .+ ....
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~~~ 56 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTY---------------------------TDMHITLYGRQLKTRIPPEIIDHERVTV 56 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHH---------------------------CCCEEEEEESSHHHHSCHHHHTSTTEEE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhc---------------------------CCceEEEEecCccccchhhccCCCceEE
Confidence 345 99999 5999999999999 7 8999999999998 777663 11 1000
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.. ..+.-..+..++++++|+||.+.+.. ++. .+.+++.+.+ ...+.+|..+|+.
T Consensus 57 ~~------------~D~~d~~~~~~~~~~~d~vv~~ag~~------------n~~-~~~~~~~~~~-~~~~~iv~iSs~~ 110 (221)
T 3r6d_A 57 IE------------GSFQNPGXLEQAVTNAEVVFVGAMES------------GSD-MASIVKALSR-XNIRRVIGVSMAG 110 (221)
T ss_dssp EE------------CCTTCHHHHHHHHTTCSEEEESCCCC------------HHH-HHHHHHHHHH-TTCCEEEEEEETT
T ss_pred EE------------CCCCCHHHHHHHHcCCCEEEEcCCCC------------Chh-HHHHHHHHHh-cCCCeEEEEeece
Confidence 00 01111123455778999999987532 222 3333333322 2335677666654
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.001 Score=68.77 Aligned_cols=89 Identities=13% Similarity=0.238 Sum_probs=59.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|||+|.||..++..+.+. .+.++ .++|+++++ .+ +
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~--------------------------~~~elvav~d~~~~~--~~--~--------- 43 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQ--------------------------PDMDLVGIFSRRATL--DT--K--------- 43 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTC--------------------------SSEEEEEEEESSSCC--SS--S---------
T ss_pred CCEEEEEeecHHHHHHHHHHhcC--------------------------CCCEEEEEEcCCHHH--hh--c---------
Confidence 46999999999999999888771 35664 578887544 11 1
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.++..++|+++.+.++|+||+|+|+... .+.+...+..++-|+.+++..
T Consensus 44 ---------~gv~~~~d~~~ll~~~DvViiatp~~~h------------------~~~~~~al~aG~~Vv~ekp~~ 92 (320)
T 1f06_A 44 ---------TPVFDVADVDKHADDVDVLFLCMGSATD------------------IPEQAPKFAQFACTVDTYDNH 92 (320)
T ss_dssp ---------SCEEEGGGGGGTTTTCSEEEECSCTTTH------------------HHHHHHHHTTTSEEECCCCCG
T ss_pred ---------CCCceeCCHHHHhcCCCEEEEcCCcHHH------------------HHHHHHHHHCCCEEEECCCCc
Confidence 0245567777666789999999865421 223344556677777766653
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0014 Score=69.35 Aligned_cols=106 Identities=10% Similarity=0.135 Sum_probs=69.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..||+|||+| +|...+..+++ ...+++++ ++|+++++.+.+.+.
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~-------------------------~~~~~elvav~~~~~~~a~~~a~~--------- 51 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQ-------------------------PPEGLELVGLLAQGSARSRELAHA--------- 51 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSS-------------------------CCTTEEEEEEECCSSHHHHHHHHH---------
T ss_pred CCEEEEEehH-HHHHHHHHHHh-------------------------CCCCeEEEEEECCCHHHHHHHHHH---------
Confidence 4689999999 59876666655 11357766 579999999887642
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
-++...+|+++.+++.|+++|++|++.... ...+.....+..|+-|+.+=.+.+..+
T Consensus 52 ---------~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~--------------~~~~~a~~al~aGkhVl~EKPl~~~ea 108 (372)
T 4gmf_A 52 ---------FGIPLYTSPEQITGMPDIACIVVRSTVAGG--------------AGTQLARHFLARGVHVIQEHPLHPDDI 108 (372)
T ss_dssp ---------TTCCEESSGGGCCSCCSEEEECCC--CTTS--------------HHHHHHHHHHHTTCEEEEESCCCHHHH
T ss_pred ---------hCCCEECCHHHHhcCCCEEEEECCCcccch--------------hHHHHHHHHHHcCCcEEEecCCCHHHH
Confidence 123456788888899999999998876421 111223334556776666666766666
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+++.+
T Consensus 109 ~~l~~ 113 (372)
T 4gmf_A 109 SSLQT 113 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.004 Score=62.96 Aligned_cols=162 Identities=13% Similarity=0.118 Sum_probs=93.9
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|+| +|+||..++..+... .++++++ +|++..... |.. .
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~--------------------------~~~eLv~~~d~~~~~~~----G~d-~---- 51 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAA--------------------------PDATLVGALDRTGSPQL----GQD-A---- 51 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHC--------------------------TTEEEEEEBCCTTCTTT----TSB-T----
T ss_pred ccEEEEECCCCHHHHHHHHHHHhC--------------------------CCCEEEEEEEecCcccc----ccc-H----
Confidence 57999999 899999999988871 5777776 687643211 110 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.++.. ...++..++|+++.++++|+||-+++ |. .+. +.+...+..+.-+|+.||-.
T Consensus 52 -gel~g--~~~gv~v~~dl~~ll~~~DVVIDfT~-p~--------------a~~---~~~~~al~~G~~vVigTTG~--- 107 (272)
T 4f3y_A 52 -GAFLG--KQTGVALTDDIERVCAEADYLIDFTL-PE--------------GTL---VHLDAALRHDVKLVIGTTGF--- 107 (272)
T ss_dssp -TTTTT--CCCSCBCBCCHHHHHHHCSEEEECSC-HH--------------HHH---HHHHHHHHHTCEEEECCCCC---
T ss_pred -HHHhC--CCCCceecCCHHHHhcCCCEEEEcCC-HH--------------HHH---HHHHHHHHcCCCEEEECCCC---
Confidence 00000 00135567888888899999998852 21 122 22333344566677666642
Q ss_pred HHHHHHHHhhccCCcccccCCCCCch----HHHHHHHHHHHHhcCC-ceEEEec------cccchhhhhHHHHHhh
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLK----YVEAAARMIAEIATDN-KIVVEKS------TVPVRAAESIMNVLKA 227 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~----~l~~A~~~Ia~~l~~~-~lvv~eS------TvP~gtt~~~~~~L~~ 227 (598)
+++-...+.+.++..+.. ..|++| -+-...+..++.+.++ ++-|+|. -.|-||.-.+.+.+.+
T Consensus 108 s~~~~~~L~~aa~~~~vv--~a~N~s~Gv~l~~~~~~~aa~~l~~~~diei~E~HH~~K~DaPSGTA~~la~~i~~ 181 (272)
T 4f3y_A 108 SEPQKAQLRAAGEKIALV--FSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHKVDAPSGTALMMGETIAA 181 (272)
T ss_dssp CHHHHHHHHHHTTTSEEE--ECSCCCHHHHHHHHHHHHHHHHTSSSCEEEEEEEECTTCCSSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCEE--EECCCCHHHHHHHHHHHHHHHhcCcCCCEEEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 222222344444443332 233433 3455566667777654 6777776 3688998777665543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0027 Score=61.69 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=54.7
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCC-CCCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKL-PIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~-~~~e~~ 82 (598)
.|+|.|.|+ |++|..++..|++ .|++|+++++++++.+.+..... .+..
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~---------------------------~G~~V~~~~R~~~~~~~~~~~~~~~~~~-- 71 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKN---------------------------KGHEPVAMVRNEEQGPELRERGASDIVV-- 71 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSGGGHHHHHHTTCSEEEE--
T ss_pred CCeEEEECCCChHHHHHHHHHHh---------------------------CCCeEEEEECChHHHHHHHhCCCceEEE--
Confidence 478999998 9999999999999 89999999999998887764221 1111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
..+. .+..+++.++|+||.+.+.
T Consensus 72 ----------~Dl~--~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 72 ----------ANLE--EDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp ----------CCTT--SCCGGGGTTCSEEEECCCC
T ss_pred ----------cccH--HHHHHHHcCCCEEEECCCC
Confidence 1111 4456678899999998764
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0052 Score=65.58 Aligned_cols=69 Identities=13% Similarity=0.258 Sum_probs=52.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc--CCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS--NKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~--~~~~~~e~ 81 (598)
.++|+|||+|.||..++..+.. .|. +|+++|+++++.+.+.+ |.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~---------------------------~G~~~V~v~~r~~~ra~~la~~~g~------ 213 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVD---------------------------RGVRAVLVANRTYERAVELARDLGG------ 213 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHH---------------------------HCCSEEEEECSSHHHHHHHHHHHTC------
T ss_pred CCEEEEEChHHHHHHHHHHHHH---------------------------CCCCEEEEEeCCHHHHHHHHHHcCC------
Confidence 4689999999999999999998 687 99999999998765542 21
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
......++.+.+.++|+||.|+|.+
T Consensus 214 ------------~~~~~~~l~~~l~~aDvVi~at~~~ 238 (404)
T 1gpj_A 214 ------------EAVRFDELVDHLARSDVVVSATAAP 238 (404)
T ss_dssp ------------EECCGGGHHHHHHTCSEEEECCSSS
T ss_pred ------------ceecHHhHHHHhcCCCEEEEccCCC
Confidence 0000135566788999999998655
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.017 Score=60.11 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=47.3
Q ss_pred CceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.+|.. .+..+.. ..+++|+ ++|++ +.+.+.+.
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~--------------------------~~~~~l~av~d~~--~~~~~a~~-------- 45 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMI--------------------------RETLEVKTIFDLH--VNEKAAAP-------- 45 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTT--------------------------CTTEEEEEEECTT--CCHHHHHH--------
T ss_pred eeEEEEEccCHHHHHHHHHHHhh--------------------------CCCeEEEEEECCC--HHHHHHHh--------
Confidence 469999999999984 5555554 0567775 67877 22332210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~ 119 (598)
. ...+....+|+++.+++ .|+|+||+|+..
T Consensus 46 ----~---~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (349)
T 3i23_A 46 ----F---KEKGVNFTADLNELLTDPEIELITICTPAHT 77 (349)
T ss_dssp ----H---HTTTCEEESCTHHHHSCTTCCEEEECSCGGG
T ss_pred ----h---CCCCCeEECCHHHHhcCCCCCEEEEeCCcHH
Confidence 0 00134677889888875 899999987653
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0069 Score=65.33 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=67.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHc---CC-CCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNS---NK-LPIY 79 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~---~~-~~~~ 79 (598)
..||+|||+|.||..++..+.. . .+.+| .++|+++++.+.+.+ |. .++.
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~-~-------------------------~~veLvAV~D~~~era~~~a~~~yG~~~~~~ 76 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVAR-M-------------------------QGIEVGALSARRLPNTFKAIRTAYGDEENAR 76 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTT-S-------------------------SSEEEEEEECSSTHHHHHHHHHHHSSSTTEE
T ss_pred ceEEEEECChHHHHHHHHHHhh-C-------------------------CCcEEEEEEeCCHHHHHHHHHHhcCCccccc
Confidence 4689999999999999888765 1 56654 467999999887653 31 1110
Q ss_pred C-CChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 80 E-PGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 80 e-~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
. ....++-.........+++|+++.++ +.|+|++|+|.|. ...+.+...+..|+-|+..
T Consensus 77 ~~~~~~~i~~a~~~g~~~v~~D~eeLL~d~dIDaVviaTp~p~-----------------~H~e~a~~AL~AGKHVv~~ 138 (446)
T 3upl_A 77 EATTESAMTRAIEAGKIAVTDDNDLILSNPLIDVIIDATGIPE-----------------VGAETGIAAIRNGKHLVMM 138 (446)
T ss_dssp ECSSHHHHHHHHHTTCEEEESCHHHHHTCTTCCEEEECSCCHH-----------------HHHHHHHHHHHTTCEEEEC
T ss_pred cccchhhhhhhhccCCceEECCHHHHhcCCCCCEEEEcCCChH-----------------HHHHHHHHHHHcCCcEEec
Confidence 0 01111111001134678899998887 4899999976541 1233444556677777643
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0032 Score=59.21 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=61.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+|.|.|+ |++|..++..|.+ .|++|+++++++++.+.+.. +++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~---------------------------~g~~V~~~~r~~~~~~~~~~-------~~~~ 49 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQ---------------------------AGYEVTVLVRDSSRLPSEGP-------RPAH 49 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCGGGSCSSSC-------CCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHH---------------------------CCCeEEEEEeChhhcccccC-------CceE
Confidence 78999998 9999999999999 89999999999765432110 0100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.....+.-..++.++++++|+||.+.+.....+ ....++......++...+. ..+.+|..+|.
T Consensus 50 -----~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~----~~~~n~~~~~~~~~~~~~~-~~~~~v~~Ss~ 112 (206)
T 1hdo_A 50 -----VVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLS----PTTVMSEGARNIVAAMKAH-GVDKVVACTSA 112 (206)
T ss_dssp -----EEESCTTSHHHHHHHHTTCSEEEECCCCTTCCS----CCCHHHHHHHHHHHHHHHH-TCCEEEEECCG
T ss_pred -----EEEecCCCHHHHHHHHcCCCEEEECccCCCCCC----ccchHHHHHHHHHHHHHHh-CCCeEEEEeee
Confidence 000001001234456788999999875432110 1122333444444444332 33455555554
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0076 Score=64.40 Aligned_cols=95 Identities=11% Similarity=0.139 Sum_probs=67.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH---HHHHcCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI---RQWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~---~~~~~~~~~~~e~ 81 (598)
.++|+|||.|.-|.+-|.+|.+ .|.+|++=-|..... ..|.+.
T Consensus 37 gK~IaVIGyGsQG~AqAlNLRD---------------------------SGv~V~Vglr~~s~~e~~~S~~~A------- 82 (491)
T 3ulk_A 37 GKKVVIVGCGAQGLNQGLNMRD---------------------------SGLDISYALRKEAIAEKRASWRKA------- 82 (491)
T ss_dssp TSEEEEESCSHHHHHHHHHHHH---------------------------TTCEEEEEECHHHHHTTCHHHHHH-------
T ss_pred CCEEEEeCCChHhHHHHhHHHh---------------------------cCCcEEEEeCCCCcccccchHHHH-------
Confidence 3689999999999999999999 899998865522110 111110
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
...+++. .++.++++.||+|++-+|... -..+.+.|.+++++|..+......
T Consensus 83 ---------~~~Gf~v-~~~~eA~~~ADvV~~L~PD~~---------------q~~vy~~I~p~lk~G~~L~faHGF 134 (491)
T 3ulk_A 83 ---------TENGFKV-GTYEELIPQADLVINLTPDKQ---------------HSDVVRTVQPLMKDGAALGYSHGF 134 (491)
T ss_dssp ---------HHTTCEE-EEHHHHGGGCSEEEECSCGGG---------------HHHHHHHHGGGSCTTCEEEESSCH
T ss_pred ---------HHCCCEe-cCHHHHHHhCCEEEEeCChhh---------------HHHHHHHHHhhCCCCCEEEecCcc
Confidence 0023443 357889999999999976532 234457799999999999876554
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=67.99 Aligned_cols=77 Identities=10% Similarity=0.124 Sum_probs=48.8
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
||+|||+|.+|...+..+.. .|++ .. ...+.+|+ ++|+++++.+.+.+..
T Consensus 27 rvgiIG~G~ig~~H~~a~~~-~~~~----~~--------------~~~~~~lvav~d~~~~~a~~~a~~~---------- 77 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNA-VKTV----FG--------------DVERPRLVHLAEANAGLAEARAGEF---------- 77 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTT-HHHH----HC--------------SSCCCEEEEEECC--TTHHHHHHHH----------
T ss_pred cEEEEcCCHHHHHHHHHHHh-hhhh----hc--------------cCCCcEEEEEECCCHHHHHHHHHHh----------
Confidence 79999999999877666543 0000 00 00345654 6799999988776420
Q ss_pred HHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+.-++.+|+++.++ +.|+|+||+|+..
T Consensus 78 -------g~~~~y~d~~ell~~~~iDaV~IatP~~~ 106 (393)
T 4fb5_A 78 -------GFEKATADWRALIADPEVDVVSVTTPNQF 106 (393)
T ss_dssp -------TCSEEESCHHHHHHCTTCCEEEECSCGGG
T ss_pred -------CCCeecCCHHHHhcCCCCcEEEECCChHH
Confidence 11246788998886 4799999987654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0037 Score=66.23 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=65.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|+|+|.+|..++..+.. .|.+|+++|+++++.+.+.+-......-...
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~---------------------------~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~ 224 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKR---------------------------LGAVVMATDVRAATKEQVESLGGKFITVDDE 224 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCSTTHHHHHHTTCEECCC---
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHcCCeEEeeccc
Confidence 3689999999999999998888 7889999999988877665411111000000
Q ss_pred HH-HhhhcCCce-EEe--------cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 85 EV-VKKTRDVNL-FFS--------TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 85 ~~-~~~~~~~~~-~~~--------~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
+. ..+..++.. ..+ ..+.+.++.+|+||.|++.|-.+ .+.+ + .+...+.++++.+||+
T Consensus 225 ~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~-------~~~l--i---~~~~l~~mk~g~vivd 292 (384)
T 1l7d_A 225 AMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP-------APVL--I---TEEMVTKMKPGSVIID 292 (384)
T ss_dssp --------------------CCHHHHHHHHHTTCSEEEECCCCTTSC-------CCCC--S---CHHHHTTSCTTCEEEE
T ss_pred ccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCC-------CCee--e---CHHHHhcCCCCCEEEE
Confidence 00 000000000 001 11556778999999998444211 0010 1 1233456788999988
Q ss_pred ecC
Q psy11160 155 KST 157 (598)
Q Consensus 155 ~ST 157 (598)
.+.
T Consensus 293 va~ 295 (384)
T 1l7d_A 293 LAV 295 (384)
T ss_dssp TTG
T ss_pred Eec
Confidence 764
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0026 Score=62.08 Aligned_cols=74 Identities=12% Similarity=0.239 Sum_probs=49.1
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+++|.|.| .|.+|..++..|++ .| ++|+++++++++.+.+... +
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~---------------------------~G~~~V~~~~R~~~~~~~~~~~-------~ 68 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLAD---------------------------KQTIKQTLFARQPAKIHKPYPT-------N 68 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTT---------------------------CTTEEEEEEESSGGGSCSSCCT-------T
T ss_pred ccEEEEEeCCcHHHHHHHHHHHh---------------------------CCCceEEEEEcChhhhcccccC-------C
Confidence 46799999 69999999999999 88 9999999998765432211 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
+. .....+.-..+..++++.+|+||.+.+.
T Consensus 69 ~~-----~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 69 SQ-----IIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp EE-----EEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred cE-----EEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 00 0000111112345567899999988753
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0066 Score=66.05 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=66.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+++|.|+|+|.+|.+++..|++ . |++|+++++++++.+.+.+. ..+.
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~---------------------------~~g~~V~v~~R~~~ka~~la~~-~~~~---- 70 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAA---------------------------NDDINVTVACRTLANAQALAKP-SGSK---- 70 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHT---------------------------STTEEEEEEESSHHHHHHHHGG-GTCE----
T ss_pred CCEEEEECChHHHHHHHHHHHh---------------------------CCCCeEEEEECCHHHHHHHHHh-cCCc----
Confidence 4689999999999999999998 5 78999999999999887642 0000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.....+.-..++.++++++|+||.|+|.... . .+. ...+..+..+++.+...|.++
T Consensus 71 ------~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~-----------~----~v~---~a~l~~g~~vvd~~~~~p~~~ 126 (467)
T 2axq_A 71 ------AISLDVTDDSALDKVLADNDVVISLIPYTFH-----------P----NVV---KSAIRTKTDVVTSSYISPALR 126 (467)
T ss_dssp ------EEECCTTCHHHHHHHHHTSSEEEECSCGGGH-----------H----HHH---HHHHHHTCEEEECSCCCHHHH
T ss_pred ------EEEEecCCHHHHHHHHcCCCEEEECCchhhh-----------H----HHH---HHHHhcCCEEEEeecCCHHHH
Confidence 0000000011344567899999999754211 0 111 122345677777777667654
Q ss_pred H
Q psy11160 164 E 164 (598)
Q Consensus 164 ~ 164 (598)
.
T Consensus 127 ~ 127 (467)
T 2axq_A 127 E 127 (467)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0055 Score=64.54 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=37.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.++|+|+|+|.||..+|..|.. .|.+|+++|+++++++.+.+
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~---------------------------~GakVvv~D~~~~~l~~~a~ 214 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNT---------------------------EGAKLVVTDVNKAAVSAAVA 214 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHH
T ss_pred cCEEEEECchHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHH
Confidence 3689999999999999999999 89999999999998887653
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0039 Score=63.11 Aligned_cols=112 Identities=12% Similarity=0.040 Sum_probs=63.8
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+|+|.|.| .|++|..++..|.+ .|++|+++++++...+ +. +.. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~-~~-~~~-~----- 46 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKN---------------------------DGNTPIILTRSIGNKA-IN-DYE-Y----- 46 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCCC-------CCE-E-----
T ss_pred CCEEEEECCCcHHHHHHHHHHHh---------------------------CCCEEEEEeCCCCccc-CC-ceE-E-----
Confidence 36899999 59999999999999 8999999999854443 32 110 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
....+. ..++.++++++|+||-+.......+ .......++.....+++...+ .....+|..+|+...|
T Consensus 47 -------~~~Dl~-~~~~~~~~~~~d~Vih~a~~~~~~~-~~~~~~~n~~~~~~ll~a~~~-~~~~r~v~~SS~~vyg 114 (311)
T 3m2p_A 47 -------RVSDYT-LEDLINQLNDVDAVVHLAATRGSQG-KISEFHDNEILTQNLYDACYE-NNISNIVYASTISAYS 114 (311)
T ss_dssp -------EECCCC-HHHHHHHTTTCSEEEECCCCCCSSS-CGGGTHHHHHHHHHHHHHHHH-TTCCEEEEEEEGGGCC
T ss_pred -------EEcccc-HHHHHHhhcCCCEEEEccccCCCCC-hHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEccHHHhC
Confidence 012233 4456667889999998875322110 001112233334444444433 2334566666654433
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0082 Score=64.98 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=64.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|.|+|+|.+|..++..|++ .|++|+++|+++++.+.+.+....+.
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~---------------------------~G~~V~v~~R~~~~a~~la~~~~~~~----- 50 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTD---------------------------SGIKVTVACRTLESAKKLSAGVQHST----- 50 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT---------------------------TTCEEEEEESSHHHHHHTTTTCTTEE-----
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CcCEEEEEECCHHHHHHHHHhcCCce-----
Confidence 4689999999999999999998 78999999999999887653210000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.....+.-..+..++++++|+||.|+|.... . .... ..+..++.++..+...+++.
T Consensus 51 -----~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~-----------~----~i~~---a~l~~g~~vvd~~~~~~~~~ 106 (450)
T 1ff9_A 51 -----PISLDVNDDAALDAEVAKHDLVISLIPYTFH-----------A----TVIK---SAIRQKKHVVTTSYVSPAMM 106 (450)
T ss_dssp -----EEECCTTCHHHHHHHHTTSSEEEECCC--CH-----------H----HHHH---HHHHHTCEEEESSCCCHHHH
T ss_pred -----EEEeecCCHHHHHHHHcCCcEEEECCccccc-----------h----HHHH---HHHhCCCeEEEeecccHHHH
Confidence 0000000011344567899999999764321 0 1111 12334667777776666654
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0061 Score=62.75 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=49.4
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+++||+|||+ |++|...+..+.. .+.+ |.++|+++++. .+.+. .
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~---------------------------~~~~lvav~d~~~~~~-~~~~~-~----- 47 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKD---------------------------TGNCLVSAYDINDSVG-IIDSI-S----- 47 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHH---------------------------TTCEEEEEECSSCCCG-GGGGT-C-----
T ss_pred CceEEEEECCCcHHHHHHHHHHHh---------------------------CCCEEEEEEcCCHHHH-HHHhh-C-----
Confidence 3579999999 7999999999988 4544 55678887652 12111 0
Q ss_pred ChHHHHhhhcCCceEEecCHHHHh-----------ccCcEEEEecCCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAI-----------QKAQLIFISVNTPT 119 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~adviii~v~tp~ 119 (598)
....+.+|+++.+ .+.|+|+||+|+..
T Consensus 48 -----------~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~ 85 (318)
T 3oa2_A 48 -----------PQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYL 85 (318)
T ss_dssp -----------TTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGGG
T ss_pred -----------CCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcHH
Confidence 1345677887665 46899999977654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.038 Score=56.03 Aligned_cols=165 Identities=16% Similarity=0.126 Sum_probs=102.6
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
.+.+|+|+|- |. ....+++.|.+.|++|.+++.. .+.... . +.....+..+.++++
T Consensus 4 ~~m~i~v~~~-------~~---~~~~~~~~L~~~g~~v~~~~~~--~~~~~~---------~---~~~~~~~~~~~~~~~ 59 (293)
T 3d4o_A 4 TGKHVVIIGG-------DA---RQLEIIRKLSTFDAKISLVGFD--QLDDGF---------I---GVTKMRIDEVDWNTV 59 (293)
T ss_dssp TTCEEEEECB-------CH---HHHHHHHHHHHTTCEEEEESCT--TCC--C---------T---TCEEECGGGCCGGGC
T ss_pred cCcEEEEECC-------CH---HHHHHHHHHHhCCCEEEEeccc--cccccc---------c---ccccccchHHHHhcC
Confidence 5678999873 22 3456678899999999886421 110000 0 113345566778899
Q ss_pred CEEEEEee-cc-----------chhhccHHHHHhccCCCcEEEecCCCCCh-hhhhhccceeeecc-------chhhhHH
Q psy11160 473 HAIVVCTE-WD-----------EFVTLDYKRIYEGMMKPAYIFDGRKILNH-DALLDIGFNVHTVI-------DLNEYQK 532 (598)
Q Consensus 473 dalii~t~-~~-----------~f~~ld~~~l~~~m~~~~iI~D~r~i~d~-~~~~~~G~~y~~v~-------~iN~~~~ 532 (598)
|++++... +. ....++.+. .+.+.+-++|+-+.+-.|. +.+.+.|+.+.... ...+..-
T Consensus 60 d~ii~~~~~~~~~~~i~~~~~~~~~~~~~~~-l~~~~~l~~i~~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~sva 138 (293)
T 3d4o_A 60 DAILLPISGTNEAGKVDTIFSNESIVLTEEM-IEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTA 138 (293)
T ss_dssp SEEECCTTCCCTTCBCCBSSCSCCCBCCHHH-HHTSCTTCEEEESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHH
T ss_pred CEEEeccccccCCceeecccccCCccchHHH-HHhCCCCCEEEecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHH
Confidence 98886310 00 001133333 3334444577755555554 66778888765443 2234455
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCC
Q psy11160 533 TRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKL 592 (598)
Q Consensus 533 ~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~ 592 (598)
++.+..++..++.++.+++|+|+|+.- -...+++.|...|++|.+|||..
T Consensus 139 e~a~~~~l~~~~~~l~g~~v~IiG~G~----------iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 139 EGTIMMAIQHTDFTIHGANVAVLGLGR----------VGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp HHHHHHHHHHCSSCSTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESSH
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEEECCH
Confidence 666666666666678999999999743 34788999999999999999864
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0092 Score=62.63 Aligned_cols=102 Identities=21% Similarity=0.319 Sum_probs=69.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
.+|.|+|+|.+|..++..++. .|.+|+++|+++++.+.+.+ +...+
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~---------------------------~Ga~V~v~dr~~~r~~~~~~~~~~~~------ 214 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVG---------------------------LGAQVQIFDINVERLSYLETLFGSRV------ 214 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHHHGGGS------
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEeCCHHHHHHHHHhhCcee------
Confidence 689999999999999999998 78899999999999887753 11000
Q ss_pred HHHhhhcCCceEE--ecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFF--STDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~--~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.... ..+..+.+.++|+||-|++.|... .+.+ ..+...+.++++.+|++-+..+.|
T Consensus 215 ---------~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~-------~~~l-----i~~~~~~~~~~g~~ivdv~~~~gg 272 (361)
T 1pjc_A 215 ---------ELLYSNSAEIETAVAEADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQGG 272 (361)
T ss_dssp ---------EEEECCHHHHHHHHHTCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTTCC
T ss_pred ---------EeeeCCHHHHHHHHcCCCEEEECCCcCCCC-------CCee-----cCHHHHhhCCCCCEEEEEecCCCC
Confidence 0000 123445678999999998765421 1110 012334567888899887765544
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0016 Score=62.61 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=63.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||.|.| .|++|..++..|++ .|++|+++++++++.+.+ .+ ..+..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~~~~-~~-~~~~~---- 47 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLST---------------------------TDYQIYAGARKVEQVPQY-NN-VKAVH---- 47 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTT---------------------------SSCEEEEEESSGGGSCCC-TT-EEEEE----
T ss_pred CeEEEECCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCccchhhc-CC-ceEEE----
Confidence 5899999 79999999999999 899999999998654322 00 00000
Q ss_pred HHHhhhcCCceEE-ecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFF-STDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
..+.- ..++.++++++|+||-+.+..... ....++......++...+. ..+.+|..+|.
T Consensus 48 --------~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~-----~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~ 107 (219)
T 3dqp_A 48 --------FDVDWTPEEMAKQLHGMDAIINVSGSGGKS-----LLKVDLYGAVKLMQAAEKA-EVKRFILLSTI 107 (219)
T ss_dssp --------CCTTSCHHHHHTTTTTCSEEEECCCCTTSS-----CCCCCCHHHHHHHHHHHHT-TCCEEEEECCT
T ss_pred --------ecccCCHHHHHHHHcCCCEEEECCcCCCCC-----cEeEeHHHHHHHHHHHHHh-CCCEEEEECcc
Confidence 01110 123445677899999998654321 1234555556555555432 33455555443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0021 Score=64.86 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=65.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+++.|||+|-+|.+++..|++ .|.+|++++|++++.+.+.+ .
T Consensus 119 k~vlvlGaGGaaraia~~L~~---------------------------~G~~v~V~nRt~~ka~~la~-~---------- 160 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKK---------------------------QGLQVSVLNRSSRGLDFFQR-L---------- 160 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCTTHHHHHH-H----------
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHH-C----------
Confidence 589999999999999999999 78999999999999887752 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+.... +++ .+.++|+||-|+|.....+. ..+. +.+...++++.+|++.++.| .|
T Consensus 161 --------~~~~~-~~~-~l~~~DiVInaTp~Gm~~~~-----~l~~-------~~l~~~l~~~~~v~D~vY~P-~T 214 (269)
T 3phh_A 161 --------GCDCF-MEP-PKSAFDLIINATSASLHNEL-----PLNK-------EVLKGYFKEGKLAYDLAYGF-LT 214 (269)
T ss_dssp --------TCEEE-SSC-CSSCCSEEEECCTTCCCCSC-----SSCH-------HHHHHHHHHCSEEEESCCSS-CC
T ss_pred --------CCeEe-cHH-HhccCCEEEEcccCCCCCCC-----CCCh-------HHHHhhCCCCCEEEEeCCCC-ch
Confidence 01111 122 13389999999776442210 0111 12333456789999999987 44
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0028 Score=64.38 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=68.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+++.|+|+|-+|.+++..|++ .|. +|++++|++++.+.+.+..
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~---------------------------~G~~~v~v~~R~~~~a~~la~~~-------- 170 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLD---------------------------QQPASITVTNRTFAKAEQLAELV-------- 170 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TCCSEEEEEESSHHHHHHHHHHH--------
T ss_pred CCEEEEECchHHHHHHHHHHHh---------------------------cCCCeEEEEECCHHHHHHHHHHh--------
Confidence 4689999999999999999999 785 9999999999988776421
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
... ..+... ++++...++|+||-|+|.....+ .+.+. ...++++.+|++.++.|..|.
T Consensus 171 ----~~~--~~~~~~-~~~~l~~~aDiIInaTp~gm~~~------~~~l~---------~~~l~~~~~V~DlvY~P~~T~ 228 (281)
T 3o8q_A 171 ----AAY--GEVKAQ-AFEQLKQSYDVIINSTSASLDGE------LPAID---------PVIFSSRSVCYDMMYGKGYTV 228 (281)
T ss_dssp ----GGG--SCEEEE-EGGGCCSCEEEEEECSCCCC----------CSCC---------GGGEEEEEEEEESCCCSSCCH
T ss_pred ----hcc--CCeeEe-eHHHhcCCCCEEEEcCcCCCCCC------CCCCC---------HHHhCcCCEEEEecCCCccCH
Confidence 000 112222 23333378999999977654211 01110 134678899999998875543
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.01 Score=61.94 Aligned_cols=96 Identities=9% Similarity=0.099 Sum_probs=70.3
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-...+++.|...|.+|.+|||.....+.. . +..+..++.++++.
T Consensus 171 l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---------~----g~~~~~~l~ell~~ 227 (345)
T 4g2n_A 171 LTGRRLGIFGM----------GRIGRAIATRARGFGLAIHYHNRTRLSHALE---------E----GAIYHDTLDSLLGA 227 (345)
T ss_dssp CTTCEEEEESC----------SHHHHHHHHHHHTTTCEEEEECSSCCCHHHH---------T----TCEECSSHHHHHHT
T ss_pred cCCCEEEEEEe----------ChhHHHHHHHHHHCCCEEEEECCCCcchhhh---------c----CCeEeCCHHHHHhh
Confidence 57899999998 3678899999999999999999975432221 1 22556789999999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC--CCCh
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK--ILNH 511 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~ 511 (598)
+|+|++++... +-++ ++- .....|++..+++|+.+ +.|.
T Consensus 228 sDvV~l~~Plt~~T~~li~~-~~l~~mk~gailIN~aRG~~vde 270 (345)
T 4g2n_A 228 SDIFLIAAPGRPELKGFLDH-DRIAKIPEGAVVINISRGDLIND 270 (345)
T ss_dssp CSEEEECSCCCGGGTTCBCH-HHHHHSCTTEEEEECSCGGGBCH
T ss_pred CCEEEEecCCCHHHHHHhCH-HHHhhCCCCcEEEECCCCchhCH
Confidence 99999999853 3333 343 44556877778988764 3454
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.011 Score=61.81 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=69.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-...+++.|...|.+|.+||+.....+..... ++....++.++++
T Consensus 161 ~l~gktvGIIG~----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-----------g~~~~~~l~ell~ 219 (351)
T 3jtm_A 161 DLEGKTIGTVGA----------GRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET-----------GAKFVEDLNEMLP 219 (351)
T ss_dssp CSTTCEEEEECC----------SHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHH-----------CCEECSCHHHHGG
T ss_pred cccCCEEeEEEe----------CHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhC-----------CCeEcCCHHHHHh
Confidence 357999999998 3578899999999999999999875333222211 2345578999999
Q ss_pred CCCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
.+|+|+++++.. +-+++=-......|++..+++|+.+
T Consensus 220 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 257 (351)
T 3jtm_A 220 KCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNAR 257 (351)
T ss_dssp GCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSC
T ss_pred cCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcC
Confidence 999999999853 4444322344556887778888765
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.026 Score=58.16 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=69.3
Q ss_pred CCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIYE 80 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~e 80 (598)
.++||.|||+|-.|.+ +|..|.+ .|++|+++|.++ ...+.+.+...
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~---------------------------~G~~V~~~D~~~~~~~~~~L~~~gi---- 51 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKE---------------------------AGFEVSGCDAKMYPPMSTQLEALGI---- 51 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHH---------------------------TTCEEEEEESSCCTTHHHHHHHTTC----
T ss_pred CCcEEEEEEECHHHHHHHHHHHHh---------------------------CCCEEEEEcCCCCcHHHHHHHhCCC----
Confidence 4679999999999996 8888888 899999999864 23444443111
Q ss_pred CChHHHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHH-------HHHHHHH-cCCCcE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAA-------ARMIAEI-ATDNKI 151 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~-------~~~i~~~-~~~~~i 151 (598)
.+..-.+++... .++|+||++-.-|.+ .+.+...++. .+.+... .+...+
T Consensus 52 -------------~v~~g~~~~~l~~~~~d~vV~Spgi~~~--------~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~ 110 (326)
T 3eag_A 52 -------------DVYEGFDAAQLDEFKADVYVIGNVAKRG--------MDVVEAILNLGLPYISGPQWLSENVLHHHWV 110 (326)
T ss_dssp -------------EEEESCCGGGGGSCCCSEEEECTTCCTT--------CHHHHHHHHTTCCEEEHHHHHHHHTGGGSEE
T ss_pred -------------EEECCCCHHHcCCCCCCEEEECCCcCCC--------CHHHHHHHHcCCcEEeHHHHHHHHHhcCCCE
Confidence 122223444333 479999988444432 2222222210 1223443 344578
Q ss_pred EEEecCCchHHHHHHHH
Q psy11160 152 VVEKSTVPVRAAESIMN 168 (598)
Q Consensus 152 vv~~STv~~~~~~~~~~ 168 (598)
|-+..|.--.||..+..
T Consensus 111 IaVTGTnGKTTTt~ll~ 127 (326)
T 3eag_A 111 LGVAGTHGKTTTASMLA 127 (326)
T ss_dssp EEEESSSCHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHH
Confidence 88888888877766554
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0036 Score=65.38 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=52.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
-+|+|||+|.+|...+..+.. .|++ +.+ . .+.+| .++|+++++.+.+.+..
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~-~~~~---------------~~~--~-~~~~l~av~d~~~~~a~~~a~~~--------- 58 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRS-APRF---------------FDL--P-LHPDLNVLCGRDAEAVRAAAGKL--------- 58 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHH-HHHH---------------SCC--S-SEEEEEEEECSSHHHHHHHHHHH---------
T ss_pred CcEEEEcCCHHHHHHHHHHHh-Cccc---------------ccc--c-cCceEEEEEcCCHHHHHHHHHHc---------
Confidence 379999999999988887765 1111 000 0 12354 46799999998876420
Q ss_pred HHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
+.-+..+|+++.++ +.|+|+||+|+..
T Consensus 59 --------g~~~~~~d~~~ll~~~~iDaV~I~tP~~~ 87 (390)
T 4h3v_A 59 --------GWSTTETDWRTLLERDDVQLVDVCTPGDS 87 (390)
T ss_dssp --------TCSEEESCHHHHTTCTTCSEEEECSCGGG
T ss_pred --------CCCcccCCHHHHhcCCCCCEEEEeCChHH
Confidence 11246788988885 4799999987654
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.005 Score=63.26 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=49.7
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+++||+|||+ |++|...+..+.. .+.+ |.++|+++++. .+.+. .
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~---------------------------~~~~lvav~d~~~~~~-~~~~~-~----- 47 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKE---------------------------VGGVLVASLDPATNVG-LVDSF-F----- 47 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHH---------------------------TTCEEEEEECSSCCCG-GGGGT-C-----
T ss_pred CceEEEEECCChHHHHHHHHHHHh---------------------------CCCEEEEEEcCCHHHH-HHHhh-C-----
Confidence 3579999999 7999999999988 4544 55688887762 11111 0
Q ss_pred ChHHHHhhhcCCceEEecCHHHHh----------ccCcEEEEecCCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAI----------QKAQLIFISVNTPT 119 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~adviii~v~tp~ 119 (598)
....+.+|+++.+ .+.|+|+||+|+..
T Consensus 48 -----------~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~ 84 (312)
T 3o9z_A 48 -----------PEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHL 84 (312)
T ss_dssp -----------TTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGG
T ss_pred -----------CCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchh
Confidence 1345677887766 57899999987654
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0026 Score=57.70 Aligned_cols=88 Identities=5% Similarity=-0.021 Sum_probs=59.9
Q ss_pred ceEEEECC----ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIGA----GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~----G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
.+|+|||+ |.+|..++..|.+ .||+ +|++|+.+... .+
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~---------------------------~G~~--v~~vnp~~~~~------~i--- 55 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLRE---------------------------QGYR--VLPVNPRFQGE------EL--- 55 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHH---------------------------TTCE--EEEECGGGTTS------EE---
T ss_pred CEEEEECCCCCCCChHHHHHHHHHH---------------------------CCCE--EEEeCCCcccC------cC---
Confidence 58999999 8999999999999 7887 66777664210 00
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.++.+..++.+.....|++++++|.+ .+.++++++.+..- ..+++..++.
T Consensus 56 -----------~G~~~~~sl~el~~~vDlavi~vp~~---------------~~~~v~~~~~~~gi-~~i~~~~g~~ 105 (140)
T 1iuk_A 56 -----------FGEEAVASLLDLKEPVDILDVFRPPS---------------ALMDHLPEVLALRP-GLVWLQSGIR 105 (140)
T ss_dssp -----------TTEECBSSGGGCCSCCSEEEECSCHH---------------HHTTTHHHHHHHCC-SCEEECTTCC
T ss_pred -----------CCEEecCCHHHCCCCCCEEEEEeCHH---------------HHHHHHHHHHHcCC-CEEEEcCCcC
Confidence 13556667776667899999998653 34555556655443 3566655554
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=58.89 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=55.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+++.|+|+|-+|.+++..|+. .|. +|++++|++++.+.+.+..
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~---------------------------~G~~~v~i~~R~~~~a~~la~~~-------- 171 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVT---------------------------HGVQKLQVADLDTSRAQALADVI-------- 171 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEECSSHHHHHHHHHHH--------
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEECCHHHHHHHHHHH--------
Confidence 3689999999999999999999 787 7999999999988775310
Q ss_pred HHHHhhhcCCceEEec--CHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFST--DIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~adviii~v~tp 118 (598)
. .......+...+ ++.+.++++|+||-|+|..
T Consensus 172 ~---~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~G 205 (283)
T 3jyo_A 172 N---NAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_dssp H---HHHTSCCEEEECSTTHHHHHHHSSEEEECSSTT
T ss_pred H---hhcCCceEEEcCHHHHHHHHhcCCEEEECCCCC
Confidence 0 000011233333 6777889999999997653
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0068 Score=62.48 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=46.7
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHH-HHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEER-IRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~-~~~~~~~~~~~ 78 (598)
|+ +..||+|||+|++|..++..+.++. ++.+ +.++|+++++ ...+.+..
T Consensus 1 M~-~~irVaIIG~G~iG~~~~~~l~~~~-------------------------~~~elvav~d~~~~~~~~~~a~~~--- 51 (312)
T 1nvm_B 1 MN-QKLKVAIIGSGNIGTDLMIKVLRNA-------------------------KYLEMGAMVGIDAASDGLARAQRM--- 51 (312)
T ss_dssp CC-SCEEEEEECCSHHHHHHHHHHHHHC-------------------------SSEEEEEEECSCTTCHHHHHHHHT---
T ss_pred CC-CCCEEEEEcCcHHHHHHHHHHHhhC-------------------------cCeEEEEEEeCChhhhHHHHHHHc---
Confidence 44 3579999999999999999886511 4555 4567998776 44443210
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHh-----ccCcEEEEecCC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAI-----QKAQLIFISVNT 117 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~adviii~v~t 117 (598)
+....++++++.+ .++|+||+|+|+
T Consensus 52 --------------g~~~~~~~~e~ll~~~~~~~iDvV~~atp~ 81 (312)
T 1nvm_B 52 --------------GVTTTYAGVEGLIKLPEFADIDFVFDATSA 81 (312)
T ss_dssp --------------TCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred --------------CCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence 0011234445443 458999999764
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=60.46 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=71.5
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
.+||+++||. .....+++.|.+.|++|.+||.-....+ .+. ..+...+.++.++++.+|
T Consensus 5 s~kIgfIGLG----------~MG~~mA~~L~~~G~~V~v~dr~~~~~~---~l~--------~~G~~~~~s~~e~~~~~d 63 (297)
T 4gbj_A 5 SEKIAFLGLG----------NLGTPIAEILLEAGYELVVWNRTASKAE---PLT--------KLGATVVENAIDAITPGG 63 (297)
T ss_dssp CCEEEEECCS----------TTHHHHHHHHHHTTCEEEEC-------C---TTT--------TTTCEECSSGGGGCCTTC
T ss_pred CCcEEEEecH----------HHHHHHHHHHHHCCCeEEEEeCCHHHHH---HHH--------HcCCeEeCCHHHHHhcCC
Confidence 3689999993 6789999999999999999997543211 111 113467899999999999
Q ss_pred EEEEEeeccch-hhccHHHHHhccCCCcEEEecCCCCCh------hhhhhcccee
Q psy11160 474 AIVVCTEWDEF-VTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNV 521 (598)
Q Consensus 474 alii~t~~~~f-~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y 521 (598)
+++++...+.- .+.-...+...+.+..+++|...+... +.+.+.|+.|
T Consensus 64 vvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ 118 (297)
T 4gbj_A 64 IVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHY 118 (297)
T ss_dssp EEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred ceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCce
Confidence 99999876542 222223455556677799999988632 3334556655
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0029 Score=65.77 Aligned_cols=85 Identities=9% Similarity=0.168 Sum_probs=51.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcC-CCCCCC--
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSN-KLPIYE-- 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~-~~~~~e-- 80 (598)
+.||+|+|+|++|..++..|.. . ++.+|+ +.|+++++...+.+. ..+.+-
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~-~-------------------------~~~elvav~d~~~~~~~~~~~~~g~~~~~~~ 55 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTK-Q-------------------------DDMELIGITKTKPDFEAYRAKELGIPVYAAS 55 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHT-C-------------------------TTEEEEEEEESSCSHHHHHHHHTTCCEEESS
T ss_pred CcEEEEEeEhHHHHHHHHHHhc-C-------------------------CCCEEEEEEcCCHHHHHHHHHhcCccccccc
Confidence 3699999999999999998887 1 345554 457776666554421 111110
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
++--..+.. ..+....++++.+.++|+|++|+|..
T Consensus 56 ~~~v~~~~~---~~~~v~~d~~~l~~~vDvV~~aTp~~ 90 (334)
T 2czc_A 56 EEFIPRFEK---EGFEVAGTLNDLLEKVDIIVDATPGG 90 (334)
T ss_dssp GGGHHHHHH---HTCCCSCBHHHHHTTCSEEEECCSTT
T ss_pred cccceeccC---CceEEcCcHHHhccCCCEEEECCCcc
Confidence 010000111 12345568888888999999997654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.048 Score=58.84 Aligned_cols=112 Identities=9% Similarity=0.096 Sum_probs=68.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH----HHHHHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE----RIRQWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~----~~~~~~~~~~~~~e 80 (598)
.+||.|||+|..|.+.|..|++ .|++|+++|.++. ..+.+.+...
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~---------------------------~G~~V~~~D~~~~~~~~~~~~L~~~gi---- 57 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAK---------------------------LGAIVTVNDGKPFDENPTAQSLLEEGI---- 57 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHH---------------------------TTCEEEEEESSCGGGCHHHHHHHHTTC----
T ss_pred CCEEEEEeeCHHHHHHHHHHHh---------------------------CCCEEEEEeCCcccCChHHHHHHhCCC----
Confidence 3689999999999999999999 8999999998542 3334432111
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhcc-CcEEEEecCCCCCCCCCCCCCCcchHHHHHH----H--HHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQK-AQLIFISVNTPTKTFGNGKGRAADLKYVEAA----A--RMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-adviii~v~tp~~~~~~~~~~~~~~~~~~~~----~--~~i~~~~~~~~ivv 153 (598)
.+..-.+..+.+.+ +|+||++..-|.+ .+.+...++. + -+++..+.+..+|-
T Consensus 58 -------------~~~~g~~~~~~~~~~~d~vv~spgi~~~--------~p~~~~a~~~gi~v~~~~e~~~~~~~~~~Ia 116 (451)
T 3lk7_A 58 -------------KVVCGSHPLELLDEDFCYMIKNPGIPYN--------NPMVKKALEKQIPVLTEVELAYLVSESQLIG 116 (451)
T ss_dssp -------------EEEESCCCGGGGGSCEEEEEECTTSCTT--------SHHHHHHHHTTCCEECHHHHHHHHCCSEEEE
T ss_pred -------------EEEECCChHHhhcCCCCEEEECCcCCCC--------ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEE
Confidence 12222233334466 8999998554432 2222222210 0 02222233557888
Q ss_pred EecCCchHHHHHHHH
Q psy11160 154 EKSTVPVRAAESIMN 168 (598)
Q Consensus 154 ~~STv~~~~~~~~~~ 168 (598)
+..|.--.||..+..
T Consensus 117 VTGTnGKTTTt~ml~ 131 (451)
T 3lk7_A 117 ITGSNGKTTTTTMIA 131 (451)
T ss_dssp EECSSCHHHHHHHHH
T ss_pred EECCCCHHHHHHHHH
Confidence 888887777666544
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0097 Score=54.14 Aligned_cols=82 Identities=7% Similarity=0.031 Sum_probs=56.2
Q ss_pred ceEEEECC----ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIGA----GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~----G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
.+|+|||+ |.+|..++..|.+ .|++ +|++|+.+ +. +
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~---------------------------~G~~--v~~Vnp~~-~~-------i--- 62 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLE---------------------------HGYD--VYPVNPKY-EE-------V--- 62 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHH---------------------------TTCE--EEEECTTC-SE-------E---
T ss_pred CEEEEEccCCCCCchHHHHHHHHHH---------------------------CCCE--EEEECCCC-Ce-------E---
Confidence 57999999 7999999999998 7887 55655542 10 0
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.++.+..++.+.....|++++++|.+ .+.++++++.+... ..+++.
T Consensus 63 -----------~G~~~y~sl~~l~~~vDlvvi~vp~~---------------~~~~vv~~~~~~gi-~~i~~~ 108 (144)
T 2d59_A 63 -----------LGRKCYPSVLDIPDKIEVVDLFVKPK---------------LTMEYVEQAIKKGA-KVVWFQ 108 (144)
T ss_dssp -----------TTEECBSSGGGCSSCCSEEEECSCHH---------------HHHHHHHHHHHHTC-SEEEEC
T ss_pred -----------CCeeccCCHHHcCCCCCEEEEEeCHH---------------HHHHHHHHHHHcCC-CEEEEC
Confidence 13555667776667899999998653 45666666665433 345443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0099 Score=62.28 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=68.9
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-...+++.|...|.+|.+|||....+.... .++.+..++.++++.
T Consensus 158 l~g~tvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~------------~g~~~~~~l~ell~~ 215 (352)
T 3gg9_A 158 LKGQTLGIFGY----------GKIGQLVAGYGRAFGMNVLVWGRENSKERARA------------DGFAVAESKDALFEQ 215 (352)
T ss_dssp CTTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH------------TTCEECSSHHHHHHH
T ss_pred CCCCEEEEEeE----------CHHHHHHHHHHHhCCCEEEEECCCCCHHHHHh------------cCceEeCCHHHHHhh
Confidence 57899999998 36778899999999999999999743221111 133566789999999
Q ss_pred CCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++... +-+++=-......|++..+++|+.+
T Consensus 216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 252 (352)
T 3gg9_A 216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSR 252 (352)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence 99999998754 3333322345567887779999874
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0023 Score=62.46 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=44.8
Q ss_pred CceEEEECCChhHHHHHHH--HHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSV--IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~--la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
..+|+|||+|.+|..++.. +.. .|++++ ++|.|++++...-.|
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~---------------------------~g~~iVg~~D~dp~k~g~~i~g------- 130 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKN---------------------------NNTKISMAFDINESKIGTEVGG------- 130 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC---------------------------------CCEEEEEESCTTTTTCEETT-------
T ss_pred CCEEEEEccCHHHHHHHHHHhccc---------------------------CCcEEEEEEeCCHHHHHhHhcC-------
Confidence 3689999999999999984 223 567655 579998876532221
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
-.+...+++++.+++.|++++|+|+
T Consensus 131 -----------v~V~~~~dl~eli~~~D~ViIAvPs 155 (215)
T 2vt3_A 131 -----------VPVYNLDDLEQHVKDESVAILTVPA 155 (215)
T ss_dssp -----------EEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred -----------CeeechhhHHHHHHhCCEEEEecCc
Confidence 1233456777777666999999764
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0096 Score=61.59 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=45.8
Q ss_pred CceEEEECCChhHH-HHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGG-PTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~-~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.+|. ..+..|... ++.+|+ ++|+++++
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~--------------------------~~~~lvav~d~~~~~--------------- 63 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKN--------------------------ANFKLVATASRHGTV--------------- 63 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHC--------------------------TTEEEEEEECSSCCC---------------
T ss_pred CceEEEEecCHHHHHHHHHHHHhC--------------------------CCeEEEEEEeCChhh---------------
Confidence 36999999999998 678888771 466654 57777431
Q ss_pred hHHHHhhhcCCceEEecCHHHHhcc---CcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp 118 (598)
.++...+|+++.+++ .|+|+||+|+.
T Consensus 64 ----------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~ 92 (330)
T 4ew6_A 64 ----------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQ 92 (330)
T ss_dssp ----------TTSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred ----------cCCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence 124467889888765 89999997643
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.018 Score=59.97 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=51.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHH-cCCCCCCCC-C
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWN-SNKLPIYEP-G 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~-~~~~~~~e~-~ 82 (598)
.||+|+|+|+||..++..|.. . ++.+|+ +.|+++++...+. +...+++.. .
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~-~-------------------------p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~ 55 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIK-Q-------------------------PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQ 55 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHT-C-------------------------TTEEEEEEECSSCSHHHHHHHHTTCCEECCGG
T ss_pred eEEEEEecCHHHHHHHHHHHc-C-------------------------CCCEEEEEEcCChHHHHHHHHhcCcceecCcC
Confidence 589999999999999998886 1 345554 3466644443332 222233221 2
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.++++.. .++..+.++++...++|+||.|+|..
T Consensus 56 ~~~~~~~---~~v~v~~~~e~l~~~vDvV~~aTp~~ 88 (340)
T 1b7g_O 56 SIKKFEE---SGIPVAGTVEDLIKTSDIVVDTTPNG 88 (340)
T ss_dssp GHHHHHT---TTCCCCCCHHHHHHHCSEEEECCSTT
T ss_pred HHHHhcc---cccccccCHhHhhcCCCEEEECCCCc
Confidence 3333321 23445567776667899999996543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.03 Score=56.87 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=36.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.++|.|.|+ |++|..++..|++ .|++|++++++.++.+.+.
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLE---------------------------HGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHH---------------------------CCCEEEEEeCCcccHHHHH
Confidence 468999998 9999999999999 8999999999988766543
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.016 Score=59.03 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=68.3
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-...+++.|...|.+|.+|||.....+ ......++.++++.
T Consensus 120 l~g~tvGIIGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~----------------~~~~~~~l~ell~~ 173 (290)
T 3gvx_A 120 LYGKALGILGY----------GGIGRRVAHLAKAFGMRVIAYTRSSVDQN----------------VDVISESPADLFRQ 173 (290)
T ss_dssp CTTCEEEEECC----------SHHHHHHHHHHHHHTCEEEEECSSCCCTT----------------CSEECSSHHHHHHH
T ss_pred eecchheeecc----------CchhHHHHHHHHhhCcEEEEEeccccccc----------------cccccCChHHHhhc
Confidence 57899999998 46788999999999999999999754221 12345688999999
Q ss_pred CCEEEEEeec-cchhhccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEW-DEFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~-~~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|+++++. ++.+.+=-....+.|++..+++|..+
T Consensus 174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aR 210 (290)
T 3gvx_A 174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVAR 210 (290)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSC
T ss_pred cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeeh
Confidence 9999999985 34444322455667887779998764
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.04 Score=60.22 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=69.4
Q ss_pred CCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHHcCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWNSNKLPIYE 80 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~~~~~~~~e 80 (598)
+.++||.|||+|-.|.+ +|..|.+ .|++|+++|..+. ..+.|.+...+
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~---------------------------~G~~V~~~D~~~~~~~~~l~~~gi~--- 69 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLAN---------------------------EGYQISGSDLAPNSVTQHLTALGAQ--- 69 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHH---------------------------TTCEEEEECSSCCHHHHHHHHTTCE---
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHh---------------------------CCCeEEEEECCCCHHHHHHHHCCCE---
Confidence 34579999999999996 8999999 8999999997643 23344432111
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHH-------HHHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAA-------ARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~ivv 153 (598)
+..-.+. +.+.++|+||++-.-|.+ .+.+...++. .+.+...++...+|.
T Consensus 70 --------------~~~g~~~-~~~~~~d~vV~Spgi~~~--------~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~Ia 126 (494)
T 4hv4_A 70 --------------IYFHHRP-ENVLDASVVVVSTAISAD--------NPEIVAAREARIPVIRRAEMLAELMRYRHGIA 126 (494)
T ss_dssp --------------EESSCCG-GGGTTCSEEEECTTSCTT--------CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEE
T ss_pred --------------EECCCCH-HHcCCCCEEEECCCCCCC--------CHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEE
Confidence 1111233 246789999988444431 2222222221 233455555556888
Q ss_pred EecCCchHHHHHHHH
Q psy11160 154 EKSTVPVRAAESIMN 168 (598)
Q Consensus 154 ~~STv~~~~~~~~~~ 168 (598)
+..|---.||-++..
T Consensus 127 VTGTnGKTTTt~ml~ 141 (494)
T 4hv4_A 127 VAGTHGKTTTTAMLS 141 (494)
T ss_dssp EECSSSHHHHHHHHH
T ss_pred EecCCChHHHHHHHH
Confidence 888888777766554
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.013 Score=59.66 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=49.4
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
++.+||+|+|+ |.+|...+..+.+ .|++ .++..|+.+. +.. +
T Consensus 5 ~~~~rVaViG~sG~~G~~~~~~l~~---------------------------~g~~-~V~~V~p~~~-----g~~-~--- 47 (288)
T 2nu8_A 5 DKNTKVICQGFTGSQGTFHSEQAIA---------------------------YGTK-MVGGVTPGKG-----GTT-H--- 47 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH---------------------------HTCE-EEEEECTTCT-----TCE-E---
T ss_pred CCCCEEEEECCCChHHHHHHHHHHH---------------------------CCCe-EEEEeCCCcc-----cce-e---
Confidence 45679999999 9999999999888 5677 4445555321 100 0
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
.++....+++++.+ ++|++++++|.+
T Consensus 48 -----------~G~~vy~sl~el~~~~~~D~viI~tP~~ 75 (288)
T 2nu8_A 48 -----------LGLPVFNTVREAVAATGATASVIYVPAP 75 (288)
T ss_dssp -----------TTEEEESSHHHHHHHHCCCEEEECCCGG
T ss_pred -----------CCeeccCCHHHHhhcCCCCEEEEecCHH
Confidence 24667788888887 899999998765
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0031 Score=65.25 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=46.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCH-HHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSE-ERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~-~~~~~~~~~~~~~~e~~ 82 (598)
++||+|||+|.+|...+..| . .+.+|+ ++|+++ ++.+.+.+-
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~---------------------------~~~~lvav~d~~~~~~~~~~~~~-------- 45 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-D---------------------------EECSITGIAPGVPEEDLSKLEKA-------- 45 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-C---------------------------TTEEEEEEECSSTTCCCHHHHHH--------
T ss_pred ceEEEEEccchhHHHHHHhc-C---------------------------CCcEEEEEecCCchhhHHHHHHH--------
Confidence 47999999998887555444 3 677776 478876 333333210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp 118 (598)
.++ ........+|+++.+++ .|+|+||+|+.
T Consensus 46 ----~~~-~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~ 78 (337)
T 3ip3_A 46 ----ISE-MNIKPKKYNNWWEMLEKEKPDILVINTVFS 78 (337)
T ss_dssp ----HHT-TTCCCEECSSHHHHHHHHCCSEEEECSSHH
T ss_pred ----HHH-cCCCCcccCCHHHHhcCCCCCEEEEeCCcc
Confidence 000 00113567888888864 89999997654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.018 Score=55.70 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=51.3
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC--CceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP--NIQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
++++|.|.| .|++|..++..|++ . |++|+++++++++.+.+..+. .+..
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~---------------------------~~~g~~V~~~~r~~~~~~~~~~~~-~~~~ 54 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKE---------------------------GSDKFVAKGLVRSAQGKEKIGGEA-DVFI 54 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHH---------------------------TTTTCEEEEEESCHHHHHHTTCCT-TEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHh---------------------------cCCCcEEEEEEcCCCchhhcCCCe-eEEE
Confidence 357899998 59999999999999 6 899999999998877652211 1111
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
-+ +.-..++.++++++|+||.+...
T Consensus 55 ~D------------~~d~~~~~~~~~~~d~vi~~a~~ 79 (253)
T 1xq6_A 55 GD------------ITDADSINPAFQGIDALVILTSA 79 (253)
T ss_dssp CC------------TTSHHHHHHHHTTCSEEEECCCC
T ss_pred ec------------CCCHHHHHHHHcCCCEEEEeccc
Confidence 11 11012345567889999988753
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0077 Score=60.62 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=51.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++.|+|+|-+|.+++..|++ .|.+|++++|++++.+.+.+..
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~---------------------------~G~~v~v~~R~~~~a~~l~~~~--------- 162 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQ---------------------------AQQNIVLANRTFSKTKELAERF--------- 162 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHH---------------------------TTCEEEEEESSHHHHHHHHHHH---------
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHHc---------
Confidence 3689999999999999999999 7899999999999988776310
Q ss_pred HHHhhhcCCceEEecCHHHHh-c-cCcEEEEecCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-Q-KAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~-~adviii~v~tp~ 119 (598)
.. . ..+.. .+++ .+ + ++|+||.++|.+.
T Consensus 163 ---~~-~-~~~~~-~~~~-~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 163 ---QP-Y-GNIQA-VSMD-SIPLQTYDLVINATSAGL 192 (272)
T ss_dssp ---GG-G-SCEEE-EEGG-GCCCSCCSEEEECCCC--
T ss_pred ---cc-c-CCeEE-eeHH-HhccCCCCEEEECCCCCC
Confidence 00 0 01222 2333 34 3 8999999987653
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.02 Score=62.27 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=65.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++++|+|+|.+|..+|..|+. .|.+|+++|+++++.......
T Consensus 265 GKtVvVtGaGgIG~aiA~~Laa---------------------------~GA~Viv~D~~~~~a~~Aa~~---------- 307 (488)
T 3ond_A 265 GKVAVVAGYGDVGKGCAAALKQ---------------------------AGARVIVTEIDPICALQATME---------- 307 (488)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHT----------
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHHh----------
Confidence 3689999999999999999999 799999999999887665431
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
... ..+.++++..+|+++.+.+++.- +. ....+.++++.+|++-+-
T Consensus 308 ---------g~d-v~~lee~~~~aDvVi~atG~~~v--------------l~---~e~l~~mk~gaiVvNaG~ 353 (488)
T 3ond_A 308 ---------GLQ-VLTLEDVVSEADIFVTTTGNKDI--------------IM---LDHMKKMKNNAIVCNIGH 353 (488)
T ss_dssp ---------TCE-ECCGGGTTTTCSEEEECSSCSCS--------------BC---HHHHTTSCTTEEEEESSS
T ss_pred ---------CCc-cCCHHHHHHhcCEEEeCCCChhh--------------hh---HHHHHhcCCCeEEEEcCC
Confidence 112 24566778899999988654321 11 123456788888887654
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.019 Score=59.51 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=67.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||.....+....+ ++.+ .++.++++.
T Consensus 143 l~g~tvGIIG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-----------g~~~-~~l~ell~~ 200 (330)
T 4e5n_A 143 LDNATVGFLGM----------GAIGLAMADRLQGWGATLQYHEAKALDTQTEQRL-----------GLRQ-VACSELFAS 200 (330)
T ss_dssp STTCEEEEECC----------SHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHH-----------TEEE-CCHHHHHHH
T ss_pred cCCCEEEEEee----------CHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhc-----------Ccee-CCHHHHHhh
Confidence 46899999998 3677889999999999999999986322222211 1233 478899999
Q ss_pred CCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|+++.... +.+++=-......|++..+++|+.+
T Consensus 201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ar 237 (330)
T 4e5n_A 201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237 (330)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCC
Confidence 99999998864 3333322445667887779998764
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.025 Score=59.57 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=66.7
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ ..-...+++.|...|.+|.+|||....+.... . ++. ..++.++++.
T Consensus 174 l~gktvGIIGl----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~--------~----g~~-~~~l~ell~~ 230 (365)
T 4hy3_A 174 IAGSEIGIVGF----------GDLGKALRRVLSGFRARIRVFDPWLPRSMLEE--------N----GVE-PASLEDVLTK 230 (365)
T ss_dssp SSSSEEEEECC----------SHHHHHHHHHHTTSCCEEEEECSSSCHHHHHH--------T----TCE-ECCHHHHHHS
T ss_pred cCCCEEEEecC----------CcccHHHHHhhhhCCCEEEEECCCCCHHHHhh--------c----Cee-eCCHHHHHhc
Confidence 57999999998 36778999999999999999999864432221 1 223 3588999999
Q ss_pred CCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++... +-+++=-....+.|++..+++|+.+
T Consensus 231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aR 267 (365)
T 4hy3_A 231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSR 267 (365)
T ss_dssp CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSC
T ss_pred CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcC
Confidence 99999987754 2333222344567887779999873
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.11 Score=52.76 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=98.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+++.+|+++|- |. .....++.|.+.|++|.++.. +.++.. ..+..+..+..+.+++
T Consensus 5 ~~~mki~v~~~-------~~---~~~~~~~~L~~~g~~v~~~~~--~~~~~~------------~~g~~~~~~~~~~~~~ 60 (300)
T 2rir_A 5 LTGLKIAVIGG-------DA---RQLEIIRKLTEQQADIYLVGF--DQLDHG------------FTGAVKCNIDEIPFQQ 60 (300)
T ss_dssp CCSCEEEEESB-------CH---HHHHHHHHHHHTTCEEEEESC--TTSSCC------------CTTEEECCGGGSCGGG
T ss_pred ccCCEEEEECC-------CH---HHHHHHHHHHhCCCEEEEEec--cccccc------------cccceeccchHHHHhc
Confidence 35678999974 22 455678999999999988742 111100 0122345556777889
Q ss_pred CCEEEEE---eec-----cch--hh--ccHHHHHhccCCCcEEEecCCCCC-hhhhhhccceeeeccchhhh---HHHHH
Q psy11160 472 THAIVVC---TEW-----DEF--VT--LDYKRIYEGMMKPAYIFDGRKILN-HDALLDIGFNVHTVIDLNEY---QKTRF 535 (598)
Q Consensus 472 adalii~---t~~-----~~f--~~--ld~~~l~~~m~~~~iI~D~r~i~d-~~~~~~~G~~y~~v~~iN~~---~~~~~ 535 (598)
+|++++. ... .-+ .. ++-+ +.+.+.+-++|+-+.+-.| .+.+.+.|+.+......|.. ++-..
T Consensus 61 ~d~ii~~~~~~~~~~~i~s~~a~~~~~~~~~-~l~~~~~l~~i~~g~~~~d~~~~~~~~gi~v~~~~~~~~v~~~r~~~~ 139 (300)
T 2rir_A 61 IDSIILPVSATTGEGVVSTVFSNEEVVLKQD-HLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAIYNSIPT 139 (300)
T ss_dssp CSEEECCSSCEETTTEECBSSCSSCEECCHH-HHHTSCTTCEEEESSCCHHHHHHHHHTTCCEEEGGGSHHHHHHHHHHH
T ss_pred CCEEEeccccccCCcccccccccCCccchHH-HHhhcCCCCEEEEecCCHHHHHHHHHCCCEEEeecCCCceEEEcCccH
Confidence 9998872 110 000 01 2333 3344555557875555556 66777888866544433311 11000
Q ss_pred HHHHH----HHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCC
Q psy11160 536 SEKII----SSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKL 592 (598)
Q Consensus 536 ~~~i~----~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~ 592 (598)
.+-.+ ...+.++.+++|+|+|+.- -...+++.|...|++|.+|||..
T Consensus 140 ~~g~~~~~~~~~~~~l~g~~v~IiG~G~----------iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 140 VEGTIMLAIQHTDYTIHGSQVAVLGLGR----------TGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp HHHHHHHHHHTCSSCSTTSEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESSH
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEEcccH----------HHHHHHHHHHHCCCEEEEEECCH
Confidence 11111 1234578899999999742 44788999999999999999864
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.006 Score=63.55 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.6
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
+||+|+|+|++|..++..|..
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~ 22 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQ 22 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHT
T ss_pred eEEEEEeECHHHHHHHHHHHc
Confidence 689999999999999999887
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0023 Score=64.00 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=32.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
+|+|.|.|+|++|..++..|.+ .|++|+++++++++
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTA---------------------------QGHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCccc
Confidence 4789999999999999999999 89999999998654
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.019 Score=58.36 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.9
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
++||+|||+|.+|...+..+..
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~ 28 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKD 28 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTS
T ss_pred cceEEEEEEcHHHHHHHHHHhc
Confidence 5799999999999988877754
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.031 Score=59.39 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=69.0
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-...+++.|...|.+|.+|||.....+....+ ++....++.++++
T Consensus 188 ~l~gktvGIIGl----------G~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~-----------G~~~~~~l~ell~ 246 (393)
T 2nac_A 188 DLEAMHVGTVAA----------GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-----------NLTWHATREDMYP 246 (393)
T ss_dssp CCTTCEEEEECC----------SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-----------TCEECSSHHHHGG
T ss_pred cCCCCEEEEEeE----------CHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhc-----------CceecCCHHHHHh
Confidence 357899999998 3678899999999999999999976433322211 2234467889999
Q ss_pred CCCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
.+|+|+++.... +.+++=-......|++..+++|..+
T Consensus 247 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 284 (393)
T 2nac_A 247 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTAR 284 (393)
T ss_dssp GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred cCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCC
Confidence 999999998864 3344321344567777778888765
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0088 Score=59.74 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=50.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|+|.|.|+ |++|..++..|++ . |++|+++++++++...+......+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~---------------------------~~g~~V~~~~R~~~~~~~~~~~~v~~~~--- 50 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIA---------------------------NHIDHFHIGVRNVEKVPDDWRGKVSVRQ--- 50 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHH---------------------------TTCTTEEEEESSGGGSCGGGBTTBEEEE---
T ss_pred CEEEEEcCCchHHHHHHHHHhh---------------------------CCCCcEEEEECCHHHHHHhhhCCCEEEE---
Confidence 58999995 9999999999988 5 89999999998876544322111100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
..+.-..++.++++++|+||.+.+.
T Consensus 51 ---------~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 51 ---------LDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp ---------CCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred ---------cCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 0111112345678899999988653
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.017 Score=58.01 Aligned_cols=99 Identities=10% Similarity=0.007 Sum_probs=64.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++.|+|+|-+|.++|..|++ .|.+|+++++++++.+.+.+...
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~---------------------------~G~~V~v~~R~~~~~~~la~~~~-------- 163 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLS---------------------------LDCAVTITNRTVSRAEELAKLFA-------- 163 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSHHHHHHHHHHTG--------
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------cCCEEEEEECCHHHHHHHHHHhh--------
Confidence 3689999999999999999999 78999999999999887763210
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
. . ..+.. .+.++.. ..+|+||.++|.+...+ .+++. ...++++.+|++.++.|.
T Consensus 164 ----~-~-~~~~~-~~~~~~~~~~~DivVn~t~~~~~~~------~~~i~---------~~~l~~~~~v~D~~y~p~ 218 (271)
T 1nyt_A 164 ----H-T-GSIQA-LSMDELEGHEFDLIINATSSGISGD------IPAIP---------SSLIHPGIYCYDMFYQKG 218 (271)
T ss_dssp ----G-G-SSEEE-CCSGGGTTCCCSEEEECCSCGGGTC------CCCCC---------GGGCCTTCEEEESCCCSS
T ss_pred ----c-c-CCeeE-ecHHHhccCCCCEEEECCCCCCCCC------CCCCC---------HHHcCCCCEEEEeccCCc
Confidence 0 0 01222 2332222 48999999987643210 01110 012457788888877754
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.021 Score=59.58 Aligned_cols=90 Identities=11% Similarity=0.213 Sum_probs=63.7
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-+..+++.|...|.+|.+|||...... ......++.++++
T Consensus 168 ~l~gktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~----------------~~~~~~sl~ell~ 221 (340)
T 4dgs_A 168 SPKGKRIGVLGL----------GQIGRALASRAEAFGMSVRYWNRSTLSGV----------------DWIAHQSPVDLAR 221 (340)
T ss_dssp CCTTCEEEEECC----------SHHHHHHHHHHHTTTCEEEEECSSCCTTS----------------CCEECSSHHHHHH
T ss_pred cccCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEEcCCccccc----------------CceecCCHHHHHh
Confidence 357999999998 36788999999999999999999654210 2245678999999
Q ss_pred CCCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
.+|+|++++... +-+. ++ ....+.|++..+++|..+
T Consensus 222 ~aDvVil~vP~t~~t~~li~-~~~l~~mk~gailIN~aR 259 (340)
T 4dgs_A 222 DSDVLAVCVAASAATQNIVD-ASLLQALGPEGIVVNVAR 259 (340)
T ss_dssp TCSEEEECC----------C-HHHHHHTTTTCEEEECSC
T ss_pred cCCEEEEeCCCCHHHHHHhh-HHHHhcCCCCCEEEECCC
Confidence 999999998743 2233 23 334556777778888754
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.03 Score=56.41 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=58.3
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||.| .||.++|..|.. .|..|+++++.
T Consensus 150 Gk~vvVvG~s~iVG~plA~lL~~---------------------------~gAtVtv~~~~------------------- 183 (276)
T 3ngx_A 150 ENTVTIVNRSPVVGRPLSMMLLN---------------------------RNYTVSVCHSK------------------- 183 (276)
T ss_dssp SCEEEEECCCTTTHHHHHHHHHH---------------------------TTCEEEEECTT-------------------
T ss_pred CCEEEEEcCChHHHHHHHHHHHH---------------------------CCCeEEEEeCC-------------------
Confidence 3689999997 599999999999 78999999742
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
|.++++.+++||+||.+++.|..- . ...++++.+|++-++-+
T Consensus 184 --------------t~~L~~~~~~ADIVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 184 --------------TKDIGSMTRSSKIVVVAVGRPGFL---------N-----------REMVTPGSVVIDVGINY 225 (276)
T ss_dssp --------------CSCHHHHHHHSSEEEECSSCTTCB---------C-----------GGGCCTTCEEEECCCEE
T ss_pred --------------cccHHHhhccCCEEEECCCCCccc---------c-----------HhhccCCcEEEEeccCc
Confidence 245677899999999999876310 0 12358999999877654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.019 Score=57.86 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=51.2
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC-----HHHHHHHH---cC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS-----EERIRQWN---SN 74 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~-----~~~~~~~~---~~ 74 (598)
.+|+|.|.|+ |++|..++..|.+ .|++|++++|+ +++.+.+. ..
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~~~~~~~~~~~~~~~ 55 (313)
T 1qyd_A 3 KKSRVLIVGGTGYIGKRIVNASIS---------------------------LGHPTYVLFRPEVVSNIDKVQMLLYFKQL 55 (313)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHH---------------------------TTCCEEEECCSCCSSCHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHh---------------------------CCCcEEEEECCCcccchhHHHHHHHHHhC
Confidence 3578999995 9999999999999 89999999998 55654432 11
Q ss_pred CCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 75 KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 75 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
...+.. ..+.-..++.++++++|+||.+.+.
T Consensus 56 ~~~~~~------------~D~~d~~~l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 56 GAKLIE------------ASLDDHQRLVDALKQVDVVISALAG 86 (313)
T ss_dssp TCEEEC------------CCSSCHHHHHHHHTTCSEEEECCCC
T ss_pred CeEEEe------------CCCCCHHHHHHHHhCCCEEEECCcc
Confidence 111110 1111112355678899999998754
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.095 Score=51.97 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=19.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
|||+|+|+ |.||..++..+..
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~ 22 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAA 22 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 58999997 9999999998876
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.016 Score=57.67 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~ 65 (598)
++|.|||+|-+|..+|..|+. .|. +++++|.+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~---------------------------~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLAS---------------------------AGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHH---------------------------cCCCeEEEEcCCC
Confidence 689999999999999999999 675 899999987
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.029 Score=58.62 Aligned_cols=95 Identities=12% Similarity=0.181 Sum_probs=69.0
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-+..+++.|...|.+|.+|||...... ...+ ++....++.++++
T Consensus 165 ~l~g~tvGIIG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-----------g~~~~~~l~ell~ 222 (347)
T 1mx3_A 165 RIRGETLGIIGL----------GRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERAL-----------GLQRVSTLQDLLF 222 (347)
T ss_dssp CCTTCEEEEECC----------SHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHH-----------TCEECSSHHHHHH
T ss_pred CCCCCEEEEEeE----------CHHHHHHHHHHHHCCCEEEEECCCcchhh-Hhhc-----------CCeecCCHHHHHh
Confidence 357899999998 36778899999999999999999765322 1111 1244567889999
Q ss_pred CCCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCCC
Q psy11160 471 NTHAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 471 ~adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~i 508 (598)
.+|+|++++... +.++ ++ ....+.|++..+++|..+.
T Consensus 223 ~aDvV~l~~P~t~~t~~li~-~~~l~~mk~gailIN~arg 261 (347)
T 1mx3_A 223 HSDCVTLHCGLNEHNHHLIN-DFTVKQMRQGAFLVNTARG 261 (347)
T ss_dssp HCSEEEECCCCCTTCTTSBS-HHHHTTSCTTEEEEECSCT
T ss_pred cCCEEEEcCCCCHHHHHHhH-HHHHhcCCCCCEEEECCCC
Confidence 999999998764 3444 34 3445677777788887663
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0088 Score=61.04 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=47.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+|+|.|.|+ |++|..++..|++ .|++|+++++++.+.+.+......+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~l~~~~~~~~~--- 62 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRA---------------------------AGHDLVLIHRPSSQIQRLAYLEPECRV--- 62 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEECTTSCGGGGGGGCCEEEE---
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEecChHhhhhhccCCeEEEE---
Confidence 468999995 9999999999999 899999999987654433221000000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..+.-..++.++++++|+||-+..
T Consensus 63 ---------~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 63 ---------AEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp ---------CCTTCHHHHHHHTTTCSEEEEC--
T ss_pred ---------ecCCCHHHHHHHHcCCCEEEECCc
Confidence 001101224456788999998875
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=95.70 E-value=0.035 Score=57.94 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=68.9
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHH-HcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLL-YEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~-~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
.+.+++|+|+|+ ..-+..+++.|. ..|.+|.+|||.....+....+ ++.+..++.+++
T Consensus 160 ~l~g~~vgIIG~----------G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~-----------g~~~~~~l~ell 218 (348)
T 2w2k_A 160 NPRGHVLGAVGL----------GAIQKEIARKAVHGLGMKLVYYDVAPADAETEKAL-----------GAERVDSLEELA 218 (348)
T ss_dssp CSTTCEEEEECC----------SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHH-----------TCEECSSHHHHH
T ss_pred CCCCCEEEEEEE----------CHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhc-----------CcEEeCCHHHHh
Confidence 467899999998 357789999999 9999999999976433222111 124445788889
Q ss_pred cCCCEEEEEeeccc-hhhccHHHHHhccCCCcEEEecCCC
Q psy11160 470 KNTHAIVVCTEWDE-FVTLDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 470 ~~adalii~t~~~~-f~~ld~~~l~~~m~~~~iI~D~r~i 508 (598)
+.+|+|++++.... .+++=-..+...|++..+++|..+.
T Consensus 219 ~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg 258 (348)
T 2w2k_A 219 RRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARG 258 (348)
T ss_dssp HHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred ccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 99999999998753 4443223444567776788887664
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0062 Score=62.90 Aligned_cols=68 Identities=10% Similarity=0.154 Sum_probs=49.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCC-C-CCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPI-Y-EPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~-~-e~~~ 83 (598)
++|.|+|+|.+|..++..|.+ .|+ |+++|+|+++++ +.+...+. + ++.-
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~---------------------------~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~ 166 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRG---------------------------SEV-FVLAEDENVRKK-VLRSGANFVHGDPTR 166 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGG---------------------------SCE-EEEESCGGGHHH-HHHTTCEEEESCTTS
T ss_pred CCEEEECCcHHHHHHHHHHHh---------------------------CCc-EEEEeCChhhhh-HHhCCcEEEEeCCCC
Confidence 589999999999999999988 789 999999999998 76422211 1 1111
Q ss_pred HHHHhhhcCCceEEecCHHHH-hccCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSA-IQKAQLIFISVN 116 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~adviii~v~ 116 (598)
++ .++++ +++||.++++++
T Consensus 167 ~~--------------~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 167 VS--------------DLEKANVRGARAVIVDLE 186 (336)
T ss_dssp HH--------------HHHHTCSTTEEEEEECCS
T ss_pred HH--------------HHHhcChhhccEEEEcCC
Confidence 11 12233 678999999864
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.038 Score=57.43 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=20.0
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
+.||+|+|+|++|..+++.|..
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~ 24 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFN 24 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH
T ss_pred ceEEEEEccCHHHHHHHHHHHc
Confidence 3699999999999999999877
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.035 Score=59.91 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=51.2
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~ 79 (598)
||+ ..+|+|||+|.||..++..|...- ..+.+++ +.+.+|+ ++|+++++.+.+..+
T Consensus 7 MMk-~irIgIIG~G~VG~~~~~~L~~~~-----~~l~~~~------------g~~i~lvaV~d~~~~~~~~~~~~----- 63 (444)
T 3mtj_A 7 GMK-PIHVGLLGLGTVGGGTLTVLRRNA-----EEITRRA------------GREIRVVRAAVRNLDKAEALAGG----- 63 (444)
T ss_dssp SCS-CEEEEEECCHHHHHHHHHHHHHTH-----HHHHHHH------------SSCEEEEEEECSCHHHHHHHHTT-----
T ss_pred hhC-cccEEEECCCHHHHHHHHHHHHhH-----HHHHHhc------------CCCEEEEEEEECCHHHhhhhccc-----
Confidence 443 358999999999999998876510 0011111 1345544 578998887665211
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNT 117 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~t 117 (598)
..+++|+++.++ +.|+|++|+|+
T Consensus 64 ---------------~~~~~d~~ell~d~diDvVve~tp~ 88 (444)
T 3mtj_A 64 ---------------LPLTTNPFDVVDDPEIDIVVELIGG 88 (444)
T ss_dssp ---------------CCEESCTHHHHTCTTCCEEEECCCS
T ss_pred ---------------CcccCCHHHHhcCCCCCEEEEcCCC
Confidence 235678888776 47999999775
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.021 Score=57.38 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=30.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|||.|.|+ |++|..++..|.+ .||+|+++.|++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~---------------------------~G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNA---------------------------RGHEVTLVSRKP 34 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCC
Confidence 69999998 9999999999999 899999999864
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=60.83 Aligned_cols=37 Identities=16% Similarity=0.437 Sum_probs=33.4
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
||++...|+|||.|.+|+++|..|++ .|++|+++|+.
T Consensus 2 ~m~~~~dVvVIG~Gi~Gls~A~~La~---------------------------~G~~V~vle~~ 38 (363)
T 1c0p_A 2 MMHSQKRVVVLGSGVIGLSSALILAR---------------------------KGYSVHILARD 38 (363)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESS
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEecc
Confidence 67777899999999999999999999 78999999874
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.025 Score=57.09 Aligned_cols=101 Identities=9% Similarity=0.031 Sum_probs=67.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+++.|+|+|-+|.+++..|++ .|. +|++++|++++.+.+.+....
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~---------------------------~G~~~v~i~~R~~~~a~~la~~~~~------ 166 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQ---------------------------AGPSELVIANRDMAKALALRNELDH------ 166 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHH---------------------------TCCSEEEEECSCHHHHHHHHHHHCC------
T ss_pred CCEEEEECccHHHHHHHHHHHH---------------------------cCCCEEEEEeCCHHHHHHHHHHhcc------
Confidence 3689999999999999999999 785 999999999999887642100
Q ss_pred HHHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.++.+. ++++.- .++|+||-|+|.....+ .+.+. ...++++.+|++....|..|
T Consensus 167 ---------~~~~~~-~~~~l~~~~~DivInaTp~gm~~~------~~~i~---------~~~l~~~~~V~DlvY~P~~T 221 (272)
T 3pwz_A 167 ---------SRLRIS-RYEALEGQSFDIVVNATSASLTAD------LPPLP---------ADVLGEAALAYELAYGKGLT 221 (272)
T ss_dssp ---------TTEEEE-CSGGGTTCCCSEEEECSSGGGGTC------CCCCC---------GGGGTTCSEEEESSCSCCSC
T ss_pred ---------CCeeEe-eHHHhcccCCCEEEECCCCCCCCC------CCCCC---------HHHhCcCCEEEEeecCCCCC
Confidence 012221 122111 68999999976543211 11110 12467889999988876554
Q ss_pred H
Q psy11160 163 A 163 (598)
Q Consensus 163 ~ 163 (598)
.
T Consensus 222 ~ 222 (272)
T 3pwz_A 222 P 222 (272)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.04 Score=57.95 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=68.3
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCe-EEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAK-LKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~-V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
.+.+++|+|+|+ ..-+..+++.|...|.+ |.+||+.....+....+ ++....++.+++
T Consensus 161 ~l~g~tvgIIG~----------G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~-----------g~~~~~~l~ell 219 (364)
T 2j6i_A 161 DIEGKTIATIGA----------GRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV-----------GARRVENIEELV 219 (364)
T ss_dssp CSTTCEEEEECC----------SHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT-----------TEEECSSHHHHH
T ss_pred cCCCCEEEEECc----------CHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc-----------CcEecCCHHHHH
Confidence 357999999998 36788999999999997 99999865433222211 234446788999
Q ss_pred cCCCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 470 KNTHAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 470 ~~adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+.+|+|++++... +.++ ++ ......|++..+++|..+
T Consensus 220 ~~aDvV~l~~P~t~~t~~li~-~~~l~~mk~ga~lIn~ar 258 (364)
T 2j6i_A 220 AQADIVTVNAPLHAGTKGLIN-KELLSKFKKGAWLVNTAR 258 (364)
T ss_dssp HTCSEEEECCCCSTTTTTCBC-HHHHTTSCTTEEEEECSC
T ss_pred hcCCEEEECCCCChHHHHHhC-HHHHhhCCCCCEEEECCC
Confidence 9999999999875 3333 33 344566777678888765
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.025 Score=57.88 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=71.9
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
+||+++|| ......+++.|.+.|++|.+||.-.... +.+.. . +...+.++.++++.+|+
T Consensus 4 ~kIgfIGl----------G~MG~~mA~~L~~~G~~v~v~dr~~~~~---~~l~~----~----Ga~~a~s~~e~~~~~dv 62 (300)
T 3obb_A 4 KQIAFIGL----------GHMGAPMATNLLKAGYLLNVFDLVQSAV---DGLVA----A----GASAARSARDAVQGADV 62 (300)
T ss_dssp CEEEEECC----------STTHHHHHHHHHHTTCEEEEECSSHHHH---HHHHH----T----TCEECSSHHHHHTTCSE
T ss_pred CEEEEeee----------hHHHHHHHHHHHhCCCeEEEEcCCHHHH---HHHHH----c----CCEEcCCHHHHHhcCCc
Confidence 58999998 3678899999999999999999753221 11211 1 34678999999999999
Q ss_pred EEEEeeccch-hhc--cHHHHHhccCCCcEEEecCCCCCh------hhhhhccceee
Q psy11160 475 IVVCTEWDEF-VTL--DYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNVH 522 (598)
Q Consensus 475 lii~t~~~~f-~~l--d~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y~ 522 (598)
++++...+.- ++. ....+...+.+..+|+|...+-.. +.+.+.|+.|-
T Consensus 63 v~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 63 VISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp EEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred eeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9998766541 111 011123334455699999988632 44456777663
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.011 Score=59.48 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=50.4
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC------HHHHHHHH---
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS------EERIRQWN--- 72 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~------~~~~~~~~--- 72 (598)
+++++|.|.|+ |++|..++..|.+ .|++|++++|+ +++.+.+.
T Consensus 2 ~~~~~ilVtGatG~iG~~l~~~L~~---------------------------~g~~V~~l~R~~~~~~~~~~~~~~~~l~ 54 (308)
T 1qyc_A 2 GSRSRILLIGATGYIGRHVAKASLD---------------------------LGHPTFLLVRESTASSNSEKAQLLESFK 54 (308)
T ss_dssp CCCCCEEEESTTSTTHHHHHHHHHH---------------------------TTCCEEEECCCCCTTTTHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHh---------------------------CCCCEEEEECCcccccCHHHHHHHHHHH
Confidence 33578999997 9999999999999 89999999997 44544332
Q ss_pred cCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 73 SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 73 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.....+.. ..+.-..++.++++++|+||.+.+.
T Consensus 55 ~~~v~~v~------------~D~~d~~~l~~~~~~~d~vi~~a~~ 87 (308)
T 1qyc_A 55 ASGANIVH------------GSIDDHASLVEAVKNVDVVISTVGS 87 (308)
T ss_dssp TTTCEEEC------------CCTTCHHHHHHHHHTCSEEEECCCG
T ss_pred hCCCEEEE------------eccCCHHHHHHHHcCCCEEEECCcc
Confidence 11111111 1111112345678899999998753
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.027 Score=60.05 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=36.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---ceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~v~~~d~~~~~~~~~~~ 73 (598)
+||+|+|+|++|..++..|++ .| .+|+++|++.++.+.+.+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~---------------------------~g~~~~~V~v~~r~~~~~~~la~ 45 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAM---------------------------NREVFSHITLASRTLSKCQEIAQ 45 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHT---------------------------CTTTCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCCceEEEEEECCHHHHHHHHH
Confidence 689999999999999999998 56 399999999999887653
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.043 Score=55.99 Aligned_cols=75 Identities=17% Similarity=0.326 Sum_probs=58.2
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+++|||.|. ||.++|..|.. .|..|+++++.
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~---------------------------~gAtVtv~hs~------------------- 198 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLW---------------------------NNATVTTCHSK------------------- 198 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHH---------------------------TTCEEEEECTT-------------------
T ss_pred CCEEEEECCCchHHHHHHHHHHh---------------------------CCCeEEEEECC-------------------
Confidence 36899999995 89999999999 78899999732
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
+.++.+.+++||+||.+++.|.-- . ...++++.+||+-++-+
T Consensus 199 --------------t~~L~~~~~~ADIVI~Avg~p~~I---------~-----------~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 199 --------------TAHLDEEVNKGDILVVATGQPEMV---------K-----------GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp --------------CSSHHHHHTTCSEEEECCCCTTCB---------C-----------GGGSCTTCEEEECCCBC
T ss_pred --------------cccHHHHhccCCEEEECCCCcccC---------C-----------HHHcCCCcEEEEccCCC
Confidence 346677899999999999887310 0 12357899999877754
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.026 Score=58.41 Aligned_cols=92 Identities=8% Similarity=0.118 Sum_probs=66.3
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-...+++.|...|.+|.+|||.....+. + . ......++.++++.
T Consensus 135 l~gktvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~---~--------~--~~~~~~~l~ell~~ 191 (324)
T 3evt_A 135 LTGQQLLIYGT----------GQIGQSLAAKASALGMHVIGVNTTGHPADH---F--------H--ETVAFTATADALAT 191 (324)
T ss_dssp STTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEEESSCCCCTT---C--------S--EEEEGGGCHHHHHH
T ss_pred ccCCeEEEECc----------CHHHHHHHHHHHhCCCEEEEECCCcchhHh---H--------h--hccccCCHHHHHhh
Confidence 57899999998 467889999999999999999986532211 0 0 11234678899999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++... +-++ ++ ....+.|++..+++|..+
T Consensus 192 aDvV~l~lPlt~~t~~li~-~~~l~~mk~gailIN~aR 228 (324)
T 3evt_A 192 ANFIVNALPLTPTTHHLFS-TELFQQTKQQPMLINIGR 228 (324)
T ss_dssp CSEEEECCCCCGGGTTCBS-HHHHHTCCSCCEEEECSC
T ss_pred CCEEEEcCCCchHHHHhcC-HHHHhcCCCCCEEEEcCC
Confidence 99999998753 3333 34 344556877778988764
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=95.46 E-value=0.017 Score=57.47 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=49.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC--CceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP--NIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|+|.|.|+ |++|..++..|.+ . |++|+++++++++.+.+......+..-+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~---------------------------~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D 53 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLK---------------------------KVPASQIIAIVRNVEKASTLADQGVEVRHGD 53 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTT---------------------------TSCGGGEEEEESCTTTTHHHHHTTCEEEECC
T ss_pred CeEEEEcCCchHHHHHHHHHHH---------------------------hCCCCeEEEEEcCHHHHhHHhhcCCeEEEec
Confidence 47899997 9999999999998 6 8999999999877665542211111000
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
+.-..++.++++++|+||.+...
T Consensus 54 ------------~~d~~~l~~~~~~~d~vi~~a~~ 76 (287)
T 2jl1_A 54 ------------YNQPESLQKAFAGVSKLLFISGP 76 (287)
T ss_dssp ------------TTCHHHHHHHTTTCSEEEECCCC
T ss_pred ------------cCCHHHHHHHHhcCCEEEEcCCC
Confidence 11112345567889999988653
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.046 Score=56.40 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=67.8
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCC-CCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDP-KVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+||| ....+.. ..+ ++.+..++.++++
T Consensus 144 l~g~~vgIIG~----------G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~-----------g~~~~~~l~ell~ 201 (320)
T 1gdh_A 144 LDNKTLGIYGF----------GSIGQALAKRAQGFDMDIDYFDTHRASSSDE-ASY-----------QATFHDSLDSLLS 201 (320)
T ss_dssp CTTCEEEEECC----------SHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-HHH-----------TCEECSSHHHHHH
T ss_pred CCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCCCcChhhh-hhc-----------CcEEcCCHHHHHh
Confidence 47899999998 36778899999999999999999 7654321 111 2244557889999
Q ss_pred CCCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
.+|+|++++... +.+++=-....+.|++..+++|...
T Consensus 202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~ar 239 (320)
T 1gdh_A 202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTAR 239 (320)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence 999999999864 3444211344566777778888765
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.012 Score=55.68 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
..|+|||+|..|+++|..|++ .|++|+++|++
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~---------------------------~G~~V~v~Ek~ 34 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTA---------------------------AGHQVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHH---------------------------CCCCEEEEECC
Confidence 469999999999999999999 89999999985
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.034 Score=57.97 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=66.4
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-...+++.|...|.+|.+|||....+ ... ...+. ++.++++.
T Consensus 146 l~gktvgIiGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-------------~~~~~-~l~ell~~ 200 (343)
T 2yq5_A 146 IYNLTVGLIGV----------GHIGSAVAEIFSAMGAKVIAYDVAYNPE-FEP-------------FLTYT-DFDTVLKE 200 (343)
T ss_dssp GGGSEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCGG-GTT-------------TCEEC-CHHHHHHH
T ss_pred cCCCeEEEEec----------CHHHHHHHHHHhhCCCEEEEECCChhhh-hhc-------------ccccc-CHHHHHhc
Confidence 46899999998 3677889999999999999999986532 110 12333 88999999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++... +-+. ++- .....|++..+++|..+
T Consensus 201 aDvV~l~~Plt~~t~~li~~-~~l~~mk~gailIN~aR 237 (343)
T 2yq5_A 201 ADIVSLHTPLFPSTENMIGE-KQLKEMKKSAYLINCAR 237 (343)
T ss_dssp CSEEEECCCCCTTTTTCBCH-HHHHHSCTTCEEEECSC
T ss_pred CCEEEEcCCCCHHHHHHhhH-HHHhhCCCCcEEEECCC
Confidence 99999999863 3233 343 34556877779998874
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.05 Score=56.35 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=60.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|+||+|||+|.||..++..|... ...+ +++ +.+.+|++ +|+++++.+. -.+
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~-----~~~l-~~~------------g~~~~lvaV~d~~~~~~~~----------id~ 53 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRK-----REEI-EKA------------IGEFKVTAVADSKSSISGD----------FSL 53 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-----HHHH-HHH------------HCCEEEEEEECSSCEEESS----------CCH
T ss_pred cEEEEEEeccHHHHHHHHHHHhh-----HHHH-Hhc------------CCCEEEEEEEeCChHhccc----------cCH
Confidence 47999999999999999999871 0111 111 02445544 4555332211 000
Q ss_pred HHHHhhhcCCceEEe--cCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFS--TDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.+.+...... ..++ .|+++.++ +.|+|++|+|+.... .+ +.+.+...+..++-||.++.-|
T Consensus 54 ~~~~~~~~~~-~~~~~~~d~~~ll~~~~iDvVv~~tp~~~h~-------------~~-a~~~~~~aL~aGkhVv~~NKkp 118 (327)
T 3do5_A 54 VEALRMKRET-GMLRDDAKAIEVVRSADYDVLIEASVTRVDG-------------GE-GVNYIREALKRGKHVVTSNKGP 118 (327)
T ss_dssp HHHHHHHHHH-SSCSBCCCHHHHHHHSCCSEEEECCCCC-----------------C-HHHHHHHHHTTTCEEEECCSHH
T ss_pred HHHHhhhccC-ccccCCCCHHHHhcCCCCCEEEECCCCcccc-------------hh-HHHHHHHHHHCCCeEEecCchh
Confidence 0100000000 0122 37777765 489999997765321 12 4455666788899888876644
Q ss_pred h
Q psy11160 160 V 160 (598)
Q Consensus 160 ~ 160 (598)
.
T Consensus 119 l 119 (327)
T 3do5_A 119 L 119 (327)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.021 Score=57.57 Aligned_cols=68 Identities=6% Similarity=0.101 Sum_probs=51.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+++.|||+|-+|.+++..|++ .|. +|++++|+.++.+.+.+..
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~---------------------------~G~~~i~v~nRt~~ka~~la~~~-------- 163 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKN---------------------------SGFEKLKIYARNVKTGQYLAALY-------- 163 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHH---------------------------TTCCCEEEECSCHHHHHHHHHHH--------
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEeCCHHHHHHHHHHc--------
Confidence 3589999999999999999999 786 8999999999988876320
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
+..+..+.. +.++|+||-|+|.+.
T Consensus 164 ----------~~~~~~~~~--~~~~DivInaTp~gm 187 (271)
T 1npy_A 164 ----------GYAYINSLE--NQQADILVNVTSIGM 187 (271)
T ss_dssp ----------TCEEESCCT--TCCCSEEEECSSTTC
T ss_pred ----------CCccchhhh--cccCCEEEECCCCCc
Confidence 011222222 468999999987654
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.057 Score=56.11 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=67.7
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-...+++.|...|.+|.+|||....+.... . ++.. .++.++++.
T Consensus 163 l~g~tvgIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~--------~----g~~~-~~l~ell~~ 219 (335)
T 2g76_A 163 LNGKTLGILGL----------GRIGREVATRMQSFGMKTIGYDPIISPEVSAS--------F----GVQQ-LPLEEIWPL 219 (335)
T ss_dssp CTTCEEEEECC----------SHHHHHHHHHHHTTTCEEEEECSSSCHHHHHH--------T----TCEE-CCHHHHGGG
T ss_pred CCcCEEEEEeE----------CHHHHHHHHHHHHCCCEEEEECCCcchhhhhh--------c----Ccee-CCHHHHHhc
Confidence 57899999998 35778899999999999999999866532211 1 1222 478899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++.... .++ ++ ....+.|++..+++|..+
T Consensus 220 aDvV~l~~P~t~~t~~li~-~~~l~~mk~gailIN~ar 256 (335)
T 2g76_A 220 CDFITVHTPLLPSTTGLLN-DNTFAQCKKGVRVVNCAR 256 (335)
T ss_dssp CSEEEECCCCCTTTTTSBC-HHHHTTSCTTEEEEECSC
T ss_pred CCEEEEecCCCHHHHHhhC-HHHHhhCCCCcEEEECCC
Confidence 999999988763 343 33 345567877778888665
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0094 Score=62.07 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|||+|||+|..|+.+|..|++ .|++|+++|+++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~---------------------------~G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK---------------------------HGIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHh---------------------------CCCCEEEEecCC
Confidence 799999999999999999999 788888888753
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.054 Score=54.92 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=68.7
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
..+|+|+|+. .-...++..|.+.|++|.+||+.....+.... .++....++.++++ +|
T Consensus 15 ~~~I~vIG~G----------~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~~~~~~~~~~~~-aD 72 (296)
T 3qha_A 15 QLKLGYIGLG----------NMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------AGATLADSVADVAA-AD 72 (296)
T ss_dssp CCCEEEECCS----------TTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------TTCEECSSHHHHTT-SS
T ss_pred CCeEEEECcC----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CCCEEcCCHHHHHh-CC
Confidence 4689999983 57789999999999999999986543221111 13467789999999 99
Q ss_pred EEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 474 AIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 474 alii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
+||+++..+..-+--+..+...+.+..+|+|...+.
T Consensus 73 vvi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~ 108 (296)
T 3qha_A 73 LIHITVLDDAQVREVVGELAGHAKPGTVIAIHSTIS 108 (296)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCCTTCEEEECSCCC
T ss_pred EEEEECCChHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 999999876432222356666666677999998875
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.03 Score=56.33 Aligned_cols=94 Identities=11% Similarity=0.167 Sum_probs=66.4
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
+||+|+|+. .....++..|.+.|.+|.+||+.....+.... .++....++.++++++|+
T Consensus 2 ~~i~iIG~G----------~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~~~~~~~~~~~~~aDv 60 (287)
T 3pef_A 2 QKFGFIGLG----------IMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------LGAERAATPCEVVESCPV 60 (287)
T ss_dssp CEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------TTCEECSSHHHHHHHCSE
T ss_pred CEEEEEeec----------HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CCCeecCCHHHHHhcCCE
Confidence 589999973 57788999999999999999986433221111 134677899999999999
Q ss_pred EEEEeeccc-hhhccH--HHHHhccCCCcEEEecCCCC
Q psy11160 475 IVVCTEWDE-FVTLDY--KRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 475 lii~t~~~~-f~~ld~--~~l~~~m~~~~iI~D~r~i~ 509 (598)
||+++..+. .++.-+ ..+...+.+..+|+|..++.
T Consensus 61 vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~ 98 (287)
T 3pef_A 61 TFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVD 98 (287)
T ss_dssp EEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred EEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCC
Confidence 999998653 322111 33444555667999997764
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.045 Score=55.83 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=56.9
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||.|. ||.++|..|.. .|..|+++++..
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~---------------------------~gAtVtv~~~~T------------------ 199 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMK---------------------------ENATVTIVHSGT------------------ 199 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHH---------------------------TTCEEEEECTTS------------------
T ss_pred CCEEEEECCCchHHHHHHHHHHH---------------------------CCCeEEEEeCCC------------------
Confidence 36899999876 89999999999 788999998621
Q ss_pred HHHHhhhcCCceEEecCHH--HHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIK--SAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.+++ +.+++||+||.+++.|..- . ...++++.+||+-++-+
T Consensus 200 ---------------~~l~l~~~~~~ADIVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi~~ 242 (300)
T 4a26_A 200 ---------------STEDMIDYLRTADIVIAAMGQPGYV---------K-----------GEWIKEGAAVVDVGTTP 242 (300)
T ss_dssp ---------------CHHHHHHHHHTCSEEEECSCCTTCB---------C-----------GGGSCTTCEEEECCCEE
T ss_pred ---------------CCchhhhhhccCCEEEECCCCCCCC---------c-----------HHhcCCCcEEEEEeccC
Confidence 1233 6789999999999876310 0 12358999999877654
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.05 Score=58.02 Aligned_cols=95 Identities=9% Similarity=0.132 Sum_probs=69.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|||+|+ ..-...+++.|...|.+|.+|||..... .+ ......++.++++
T Consensus 142 el~gktlGiIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~------------~~---~~~~~~~l~ell~ 196 (404)
T 1sc6_A 142 EARGKKLGIIGY----------GHIGTQLGILAESLGMYVYFYDIENKLP------------LG---NATQVQHLSDLLN 196 (404)
T ss_dssp CSTTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCCC------------CT---TCEECSCHHHHHH
T ss_pred ccCCCEEEEEeE----------CHHHHHHHHHHHHCCCEEEEEcCCchhc------------cC---CceecCCHHHHHh
Confidence 357999999998 3677889999999999999999964311 11 1245568999999
Q ss_pred CCCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC--CCCh
Q psy11160 471 NTHAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK--ILNH 511 (598)
Q Consensus 471 ~adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~ 511 (598)
.+|+|++++... +-++ ++ ....+.|++..+++|+.+ +.|.
T Consensus 197 ~aDvV~l~~P~t~~t~~li~-~~~l~~mk~ga~lIN~aRg~~vd~ 240 (404)
T 1sc6_A 197 MSDVVSLHVPENPSTKNMMG-AKEISLMKPGSLLINASRGTVVDI 240 (404)
T ss_dssp HCSEEEECCCSSTTTTTCBC-HHHHHHSCTTEEEEECSCSSSBCH
T ss_pred cCCEEEEccCCChHHHHHhh-HHHHhhcCCCeEEEECCCChHHhH
Confidence 999999998875 3333 34 334556877778888776 3454
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.024 Score=57.46 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=51.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+++.|+|+|-+|.+++..|++ .|. +|++++|+.++.+.+.+...
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~---------------------------~G~~~v~v~nRt~~ka~~La~~~~------- 167 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKD---------------------------NFAKDIYVVTRNPEKTSEIYGEFK------- 167 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHH---------------------------TTCSEEEEEESCHHHHHHHCTTSE-------
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------cCCCEEEEEeCCHHHHHHHHHhcC-------
Confidence 3689999999999999999999 787 99999999999988764310
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.....+..+ + ++|+||-|+|..
T Consensus 168 -----------~~~~~~l~~-l-~~DivInaTp~G 189 (282)
T 3fbt_A 168 -----------VISYDELSN-L-KGDVIINCTPKG 189 (282)
T ss_dssp -----------EEEHHHHTT-C-CCSEEEECSSTT
T ss_pred -----------cccHHHHHh-c-cCCEEEECCccC
Confidence 111122333 4 899999997654
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.054 Score=55.48 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=66.8
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||....+...+ . ++.. .++.+++++
T Consensus 140 l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~--------~----g~~~-~~l~ell~~ 196 (307)
T 1wwk_A 140 LEGKTIGIIGF----------GRIGYQVAKIANALGMNILLYDPYPNEERAKE--------V----NGKF-VDLETLLKE 196 (307)
T ss_dssp CTTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHH--------T----TCEE-CCHHHHHHH
T ss_pred cCCceEEEEcc----------CHHHHHHHHHHHHCCCEEEEECCCCChhhHhh--------c----Cccc-cCHHHHHhh
Confidence 47899999998 36788899999999999999999876532211 1 1233 378889999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++.... .++ ++ ......|++..+++|..+
T Consensus 197 aDvV~l~~p~~~~t~~li~-~~~l~~mk~ga~lin~ar 233 (307)
T 1wwk_A 197 SDVVTIHVPLVESTYHLIN-EERLKLMKKTAILINTSR 233 (307)
T ss_dssp CSEEEECCCCSTTTTTCBC-HHHHHHSCTTCEEEECSC
T ss_pred CCEEEEecCCChHHhhhcC-HHHHhcCCCCeEEEECCC
Confidence 999999988643 344 33 334456777778888765
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.048 Score=55.28 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=56.8
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||.|. ||.++|..|.. .|..|+++++.
T Consensus 159 gk~vvVIG~s~iVG~p~A~lL~~---------------------------~gAtVtv~hs~------------------- 192 (288)
T 1b0a_A 159 GLNAVVIGASNIVGRPMSMELLL---------------------------AGCTTTVTHRF------------------- 192 (288)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHT---------------------------TTCEEEEECSS-------------------
T ss_pred CCEEEEECCChHHHHHHHHHHHH---------------------------CCCeEEEEeCC-------------------
Confidence 36899999995 79999999998 78899998632
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||+||.+++.|.-- .. +.++++.+||+-++-
T Consensus 193 --------------t~~L~~~~~~ADIVI~Avg~p~lI-------~~-------------~~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 193 --------------TKNLRHHVENADLLIVAVGKPGFI-------PG-------------DWIKEGAIVIDVGIN 233 (288)
T ss_dssp --------------CSCHHHHHHHCSEEEECSCCTTCB-------CT-------------TTSCTTCEEEECCCE
T ss_pred --------------chhHHHHhccCCEEEECCCCcCcC-------CH-------------HHcCCCcEEEEccCC
Confidence 245677899999999999877311 00 124789999986654
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.052 Score=56.31 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=67.3
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-+..+++.|...|.+|.+|||....+.. ..+ ++.. .++.++++
T Consensus 143 ~l~g~~vgIIG~----------G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~-~~~-----------g~~~-~~l~e~l~ 199 (333)
T 2d0i_A 143 SLYGKKVGILGM----------GAIGKAIARRLIPFGVKLYYWSRHRKVNVE-KEL-----------KARY-MDIDELLE 199 (333)
T ss_dssp CSTTCEEEEECC----------SHHHHHHHHHHGGGTCEEEEECSSCCHHHH-HHH-----------TEEE-CCHHHHHH
T ss_pred CCCcCEEEEEcc----------CHHHHHHHHHHHHCCCEEEEECCCcchhhh-hhc-----------Ccee-cCHHHHHh
Confidence 357899999998 357788999999999999999998765221 111 1233 37788899
Q ss_pred CCCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
++|+|++++... +.+++=-..+...|++. +++|...
T Consensus 200 ~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~sr 236 (333)
T 2d0i_A 200 KSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGR 236 (333)
T ss_dssp HCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSC
T ss_pred hCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCC
Confidence 999999999887 55553223444567766 8888764
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.032 Score=58.00 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=20.5
Q ss_pred CCceEEEEC-CChhHHHHHHHHHH
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~ 26 (598)
.|+||+|+| .|++|..+...|..
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~ 26 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNR 26 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHH
T ss_pred CceEEEEECCCChHHHHHHHHHHh
Confidence 457999999 59999999999887
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.015 Score=60.30 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=32.9
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
||+...+|+|||.|.+|+++|..|++ .|++|+++|++
T Consensus 1 Mm~~~~dVvIIGgGi~Gl~~A~~La~---------------------------~G~~V~lle~~ 37 (382)
T 1y56_B 1 MLPEKSEIVVIGGGIVGVTIAHELAK---------------------------RGEEVTVIEKR 37 (382)
T ss_dssp -CCSBCSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSS
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeCC
Confidence 77767789999999999999999999 78899999986
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=61.70 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
++|+|.|.|+ |++|..++..|.+ .|++|+++++++..
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~ 65 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKH---------------------------EGHYVIASDWKKNE 65 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSCCS
T ss_pred cCCeEEEECCccHHHHHHHHHHHH---------------------------CCCeEEEEECCCcc
Confidence 4679999998 9999999999999 89999999997543
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.046 Score=56.71 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=66.8
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||...... +.....++.+++++
T Consensus 162 l~g~~vgIIG~----------G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g~~~~~~l~ell~~ 215 (333)
T 3ba1_A 162 FSGKRVGIIGL----------GRIGLAVAERAEAFDCPISYFSRSKKPNT----------------NYTYYGSVVELASN 215 (333)
T ss_dssp CTTCCEEEECC----------SHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------CSEEESCHHHHHHT
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEECCCchhcc----------------CceecCCHHHHHhc
Confidence 57899999998 36788999999999999999998653210 12345678899999
Q ss_pred CCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCCC
Q psy11160 472 THAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 472 adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~i 508 (598)
+|+|++++... +.+++=-....+.|++..+++|..+.
T Consensus 216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG 253 (333)
T 3ba1_A 216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRG 253 (333)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCG
T ss_pred CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 99999999874 44443213344567766788887653
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.078 Score=54.58 Aligned_cols=75 Identities=11% Similarity=0.208 Sum_probs=53.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC---HHHHHHHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS---EERIRQWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~---~~~~~~~~~~~~~~~e 80 (598)
.+++.|+|+|-+|.+++..|++ .|. +|++++|+ .++.+.+.+.
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~---------------------------~Ga~~V~i~nR~~~~~~~a~~la~~------ 200 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAAL---------------------------DGVKEISIFNRKDDFYANAEKTVEK------ 200 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEEECSSTTHHHHHHHHHH------
T ss_pred CCEEEEECCChHHHHHHHHHHH---------------------------CCCCEEEEEECCCchHHHHHHHHHH------
Confidence 3689999999999999999999 787 89999999 8888876531
Q ss_pred CChHHHHhhhcCCceEEe--c---CHHHHhccCcEEEEecCCC
Q psy11160 81 PGLDEVVKKTRDVNLFFS--T---DIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--~---~~~~~~~~adviii~v~tp 118 (598)
+.......+... . ++.+.+.++|+||-|+|..
T Consensus 201 ------~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~G 237 (315)
T 3tnl_A 201 ------INSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVG 237 (315)
T ss_dssp ------HHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTT
T ss_pred ------hhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCC
Confidence 000000112221 1 2345678999999997654
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.059 Score=55.75 Aligned_cols=94 Identities=13% Similarity=0.200 Sum_probs=66.2
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+. .-+..+++.|...|.+|.+||+.....+....+ ++... ++.+++++
T Consensus 153 l~g~~vgIIG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----------g~~~~-~l~e~l~~ 210 (330)
T 2gcg_A 153 LTQSTVGIIGLG----------RIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF-----------QAEFV-STPELAAQ 210 (330)
T ss_dssp CTTCEEEEECCS----------HHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT-----------TCEEC-CHHHHHHH
T ss_pred CCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcchhHHHhc-----------CceeC-CHHHHHhh
Confidence 468999999983 577889999999999999999865422211111 22444 78888999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCCC
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~i 508 (598)
+|+|++++.... .++ ++ ..+...|++..++++..+.
T Consensus 211 aDvVi~~vp~~~~t~~~i~-~~~~~~mk~gailIn~srg 248 (330)
T 2gcg_A 211 SDFIVVACSLTPATEGLCN-KDFFQKMKETAVFINISRG 248 (330)
T ss_dssp CSEEEECCCCCTTTTTCBS-HHHHHHSCTTCEEEECSCG
T ss_pred CCEEEEeCCCChHHHHhhC-HHHHhcCCCCcEEEECCCC
Confidence 999999998653 333 33 3445567766688887653
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.06 Score=57.56 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=67.3
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ ..-...+++.|...|.+|.+|||..... .+ ......++.++++.
T Consensus 154 l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~yd~~~~~~------------~~---~~~~~~sl~ell~~ 208 (416)
T 3k5p_A 154 VRGKTLGIVGY----------GNIGSQVGNLAESLGMTVRYYDTSDKLQ------------YG---NVKPAASLDELLKT 208 (416)
T ss_dssp STTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECTTCCCC------------BT---TBEECSSHHHHHHH
T ss_pred CCCCEEEEEee----------CHHHHHHHHHHHHCCCEEEEECCcchhc------------cc---CcEecCCHHHHHhh
Confidence 47899999998 3678899999999999999999853211 01 12456789999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHD 512 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~ 512 (598)
+|+|+++..... -++ ++- .....|++..+++|..+ +.|.+
T Consensus 209 aDvV~lhvPlt~~T~~li~~-~~l~~mk~gailIN~aRG~vvd~~ 252 (416)
T 3k5p_A 209 SDVVSLHVPSSKSTSKLITE-AKLRKMKKGAFLINNARGSDVDLE 252 (416)
T ss_dssp CSEEEECCCC-----CCBCH-HHHHHSCTTEEEEECSCTTSBCHH
T ss_pred CCEEEEeCCCCHHHhhhcCH-HHHhhCCCCcEEEECCCChhhhHH
Confidence 999999987643 233 343 34456877778999765 34543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.026 Score=58.41 Aligned_cols=97 Identities=18% Similarity=0.116 Sum_probs=67.4
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ ..-...+++.|...|.+|.+||+....... + . ......++.++++.
T Consensus 138 l~g~tvGIIGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~---~---------~-~~~~~~~l~ell~~ 194 (324)
T 3hg7_A 138 LKGRTLLILGT----------GSIGQHIAHTGKHFGMKVLGVSRSGRERAG---F---------D-QVYQLPALNKMLAQ 194 (324)
T ss_dssp STTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCCCTT---C---------S-EEECGGGHHHHHHT
T ss_pred cccceEEEEEE----------CHHHHHHHHHHHhCCCEEEEEcCChHHhhh---h---------h-cccccCCHHHHHhh
Confidence 47899999998 467889999999999999999986532210 0 0 11234678899999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC--CCChh
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK--ILNHD 512 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~ 512 (598)
+|+|++++... +-+. ++- .....|++..+++|+.+ +.|.+
T Consensus 195 aDvV~l~lPlt~~T~~li~~-~~l~~mk~gailIN~aRG~~vde~ 238 (324)
T 3hg7_A 195 ADVIVSVLPATRETHHLFTA-SRFEHCKPGAILFNVGRGNAINEG 238 (324)
T ss_dssp CSEEEECCCCCSSSTTSBCT-TTTTCSCTTCEEEECSCGGGBCHH
T ss_pred CCEEEEeCCCCHHHHHHhHH-HHHhcCCCCcEEEECCCchhhCHH
Confidence 99999998753 2232 232 33456777778888765 34543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.017 Score=57.33 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=47.7
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC--CceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP--NIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+|.|.|+ |++|..++..|.+ . |++|+++++++++.+.+......+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~---------------------------~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--- 50 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMK---------------------------TVPASQIVAIVRNPAKAQALAAQGITVRQ--- 50 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTT---------------------------TSCGGGEEEEESCTTTCHHHHHTTCEEEE---
T ss_pred CEEEEcCCchHHHHHHHHHHh---------------------------hCCCceEEEEEcChHhhhhhhcCCCeEEE---
Confidence 5889997 9999999999998 6 89999999988766554421111100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
..+.-..+..++++++|+||.+...
T Consensus 51 ---------~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 51 ---------ADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp ---------CCTTCHHHHHHHTTTCSEEEECC--
T ss_pred ---------cCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 0111112345577889999988653
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.054 Score=59.79 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=68.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+. .-...+++.|.+.|.+|.+|||....+.... + | +... ++.++++.
T Consensus 140 l~g~~vgIIG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-~-------g----~~~~-~l~e~~~~ 196 (529)
T 1ygy_A 140 IFGKTVGVVGLG----------RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-L-------G----IELL-SLDDLLAR 196 (529)
T ss_dssp CTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-H-------T----CEEC-CHHHHHHH
T ss_pred cCCCEEEEEeeC----------HHHHHHHHHHHhCCCEEEEECCCCChhHHHh-c-------C----cEEc-CHHHHHhc
Confidence 578999999983 5678899999999999999999875433221 1 1 2333 78889999
Q ss_pred CCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|+++++.. +.+++=-..+...|++..+++|...
T Consensus 197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~ar 233 (529)
T 1ygy_A 197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR 233 (529)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCC
Confidence 99999999877 5555322335566777779999765
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.048 Score=55.99 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=67.4
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
...+|+|+|+ ...+..++..|.+.|.+|.+||+.....+ .+. ..++....++.++++++
T Consensus 30 ~~~~I~iIG~----------G~mG~~~a~~l~~~G~~V~~~dr~~~~~~---~l~--------~~g~~~~~~~~e~~~~a 88 (320)
T 4dll_A 30 YARKITFLGT----------GSMGLPMARRLCEAGYALQVWNRTPARAA---SLA--------ALGATIHEQARAAARDA 88 (320)
T ss_dssp CCSEEEEECC----------TTTHHHHHHHHHHTTCEEEEECSCHHHHH---HHH--------TTTCEEESSHHHHHTTC
T ss_pred CCCEEEEECc----------cHHHHHHHHHHHhCCCeEEEEcCCHHHHH---HHH--------HCCCEeeCCHHHHHhcC
Confidence 4569999998 35788999999999999999998543211 111 01346778999999999
Q ss_pred CEEEEEeeccc-hhhccHH--HHHhccCCCcEEEecCCCC
Q psy11160 473 HAIVVCTEWDE-FVTLDYK--RIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 473 dalii~t~~~~-f~~ld~~--~l~~~m~~~~iI~D~r~i~ 509 (598)
|+||+++..+. .++. +. .+...+.+..+|+|.....
T Consensus 89 DvVi~~vp~~~~~~~v-~~~~~~~~~l~~~~~vi~~st~~ 127 (320)
T 4dll_A 89 DIVVSMLENGAVVQDV-LFAQGVAAAMKPGSLFLDMASIT 127 (320)
T ss_dssp SEEEECCSSHHHHHHH-HTTTCHHHHCCTTCEEEECSCCC
T ss_pred CEEEEECCCHHHHHHH-HcchhHHhhCCCCCEEEecCCCC
Confidence 99999998653 2221 11 3334456667999998875
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.015 Score=61.05 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCCceEEEEC-CChhHHHHHHHHHHhCCCCcc
Q psy11160 2 VQTISHICCIG-AGYVGGPTCSVIALKCPNIQV 33 (598)
Q Consensus 2 ~~~~~~I~viG-~G~vG~~~a~~la~~~~~~~~ 33 (598)
|.+++||+||| .||+|.-+...|.. .|.+.+
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~-hP~~el 35 (359)
T 4dpl_A 4 MRRTLKAAILGATGLVGIEYVRMLSN-HPYIKP 35 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTT-CSSEEE
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHh-CCCceE
Confidence 44557999999 59999999998876 344433
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.015 Score=61.05 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCCceEEEEC-CChhHHHHHHHHHHhCCCCcc
Q psy11160 2 VQTISHICCIG-AGYVGGPTCSVIALKCPNIQV 33 (598)
Q Consensus 2 ~~~~~~I~viG-~G~vG~~~a~~la~~~~~~~~ 33 (598)
|.+++||+||| .||+|.-+...|.. .|.+.+
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~-hP~~el 35 (359)
T 4dpk_A 4 MRRTLKAAILGATGLVGIEYVRMLSN-HPYIKP 35 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTT-CSSEEE
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHh-CCCceE
Confidence 44557999999 59999999998876 344433
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.037 Score=56.50 Aligned_cols=96 Identities=11% Similarity=0.190 Sum_probs=66.8
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
+-.+|+|+|+ ......++..|.+.|.+|.+||+.....+.... .++....++.++++++
T Consensus 20 ~m~~I~iIG~----------G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g~~~~~~~~~~~~~a 78 (310)
T 3doj_A 20 HMMEVGFLGL----------GIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------HGASVCESPAEVIKKC 78 (310)
T ss_dssp CSCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------TTCEECSSHHHHHHHC
T ss_pred cCCEEEEECc----------cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CCCeEcCCHHHHHHhC
Confidence 3468999998 357889999999999999999986432221111 1346678999999999
Q ss_pred CEEEEEeeccc-hhhccH--HHHHhccCCCcEEEecCCCC
Q psy11160 473 HAIVVCTEWDE-FVTLDY--KRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 473 dalii~t~~~~-f~~ld~--~~l~~~m~~~~iI~D~r~i~ 509 (598)
|+||+++..+. .++.-+ +.+...+.+..+|+|...+.
T Consensus 79 Dvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~ 118 (310)
T 3doj_A 79 KYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVD 118 (310)
T ss_dssp SEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred CEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCC
Confidence 99999997653 222110 23334455666999988764
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.08 Score=53.58 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=56.5
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||.|. +|.++|..|.. .|..|++.++.
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~---------------------------~gAtVtv~h~~------------------- 193 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLN---------------------------AGATVSVCHIK------------------- 193 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHH---------------------------TTCEEEEECTT-------------------
T ss_pred CCEEEEECCCchHHHHHHHHHHH---------------------------CCCeEEEEeCC-------------------
Confidence 36899999876 89999999999 78899998742
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++++.+++||+||.+++.|.- +. .+.++++.+|++-..-
T Consensus 194 --------------t~~L~~~~~~ADIVI~Avg~p~~--------------I~------~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 194 --------------TKDLSLYTRQADLIIVAAGCVNL--------------LR------SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp --------------CSCHHHHHTTCSEEEECSSCTTC--------------BC------GGGSCTTEEEEECCCE
T ss_pred --------------chhHHHHhhcCCEEEECCCCCCc--------------CC------HHHcCCCeEEEEeccC
Confidence 23566789999999999987631 00 1345889999886554
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.076 Score=55.02 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=67.2
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+. .-+..+++.|...|.+|.+|||....+ ....+ ++.+ .++.+++++
T Consensus 148 l~g~~vgIIG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~-----------g~~~-~~l~~~l~~ 204 (334)
T 2dbq_A 148 VYGKTIGIIGLG----------RIGQAIAKRAKGFNMRILYYSRTRKEE-VEREL-----------NAEF-KPLEDLLRE 204 (334)
T ss_dssp CTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHH-----------CCEE-CCHHHHHHH
T ss_pred CCCCEEEEEccC----------HHHHHHHHHHHhCCCEEEEECCCcchh-hHhhc-----------Cccc-CCHHHHHhh
Confidence 578999999983 577899999999999999999977652 22111 1233 478888999
Q ss_pred CCEEEEEeeccc-hhhccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWDE-FVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~~-f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++.... .+++=-..+...|++..+++|...
T Consensus 205 aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~sr 241 (334)
T 2dbq_A 205 SDFVVLAVPLTRETYHLINEERLKLMKKTAILINIAR 241 (334)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred CCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence 999999998765 444322344556776678888765
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.068 Score=54.88 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=66.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||....... .. . ++.. .++.++++.
T Consensus 140 l~g~~vgIIG~----------G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~-------~----g~~~-~~l~ell~~ 196 (313)
T 2ekl_A 140 LAGKTIGIVGF----------GRIGTKVGIIANAMGMKVLAYDILDIREKA-EK-------I----NAKA-VSLEELLKN 196 (313)
T ss_dssp CTTCEEEEESC----------SHHHHHHHHHHHHTTCEEEEECSSCCHHHH-HH-------T----TCEE-CCHHHHHHH
T ss_pred CCCCEEEEEee----------CHHHHHHHHHHHHCCCEEEEECCCcchhHH-Hh-------c----Ccee-cCHHHHHhh
Confidence 46899999998 367889999999999999999998765321 11 1 1233 478889999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++.... .++ ++ ....+.|++..+++|...
T Consensus 197 aDvVvl~~P~~~~t~~li~-~~~l~~mk~ga~lIn~ar 233 (313)
T 2ekl_A 197 SDVISLHVTVSKDAKPIID-YPQFELMKDNVIIVNTSR 233 (313)
T ss_dssp CSEEEECCCCCTTSCCSBC-HHHHHHSCTTEEEEESSC
T ss_pred CCEEEEeccCChHHHHhhC-HHHHhcCCCCCEEEECCC
Confidence 999999988644 333 23 334456777778888654
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.04 Score=55.46 Aligned_cols=94 Identities=10% Similarity=0.105 Sum_probs=65.6
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
+||+|+|+ ......++..|.+.|.+|.+||+.....+.... . +.....++.++++++|+
T Consensus 2 ~~I~iiG~----------G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-------~----g~~~~~~~~~~~~~adv 60 (287)
T 3pdu_A 2 TTYGFLGL----------GIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-------L----GARQASSPAEVCAACDI 60 (287)
T ss_dssp CCEEEECC----------STTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-------H----TCEECSCHHHHHHHCSE
T ss_pred CeEEEEcc----------CHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-------C----CCeecCCHHHHHHcCCE
Confidence 47999997 367889999999999999999986432221111 1 23667899999999999
Q ss_pred EEEEeecc-chhhccH--HHHHhccCCCcEEEecCCCC
Q psy11160 475 IVVCTEWD-EFVTLDY--KRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 475 lii~t~~~-~f~~ld~--~~l~~~m~~~~iI~D~r~i~ 509 (598)
+|+++..+ ..++.=+ +.+...+.+..+|+|.....
T Consensus 61 vi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~ 98 (287)
T 3pdu_A 61 TIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVD 98 (287)
T ss_dssp EEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCC
T ss_pred EEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCC
Confidence 99999876 3322110 23334455566899988764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.16 Score=52.70 Aligned_cols=41 Identities=27% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI 68 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~ 68 (598)
|..+.|+|.|.|+ |++|..++..|++ .|++|+++++++++.
T Consensus 1 M~~~~~~ilVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~ 42 (352)
T 1xgk_A 1 MAQQKKTIAVVGATGRQGASLIRVAAA---------------------------VGHHVRAQVHSLKGL 42 (352)
T ss_dssp --CCCCCEEEESTTSHHHHHHHHHHHH---------------------------TTCCEEEEESCSCSH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEEECCCChh
Confidence 4333578999995 9999999999999 899999999987654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=59.87 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=45.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.|+|.|.|+ |++|..++..|++ .|++|+++++++.. .+. .+..
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~---------------------------~G~~V~~~~r~~~~-----~~~-~~~~--- 62 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRT---------------------------QGRTVRGFDLRPSG-----TGG-EEVV--- 62 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHH---------------------------TTCCEEEEESSCCS-----SCC-SEEE---
T ss_pred CCEEEEECCCChHHHHHHHHHHh---------------------------CCCEEEEEeCCCCC-----CCc-cEEe---
Confidence 478999998 9999999999999 89999999998654 111 1100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..+.-..+..++++++|+||-+..
T Consensus 63 ---------~Dl~d~~~~~~~~~~~d~vih~A~ 86 (347)
T 4id9_A 63 ---------GSLEDGQALSDAIMGVSAVLHLGA 86 (347)
T ss_dssp ---------SCTTCHHHHHHHHTTCSEEEECCC
T ss_pred ---------cCcCCHHHHHHHHhCCCEEEECCc
Confidence 011111234556789999998864
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.032 Score=57.15 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=49.3
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC----HHHHHHHHcCCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS----EERIRQWNSNKLPI 78 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~----~~~~~~~~~~~~~~ 78 (598)
+.|+|.|.|+ |++|..++..|.+ .|++|++++++ .+.++.+.....+.
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~ 76 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLK---------------------------LNQVVIGLDNFSTGHQYNLDEVKTLVSTE 76 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEECCSSCCHHHHHHHHHTSCHH
T ss_pred CCCeEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCCCCchhhhhhhhhccccc
Confidence 3579999995 9999999999999 89999999994 44455444210000
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..+++. .....+.-..++.++++++|+||-+..
T Consensus 77 ~~~~~~-----~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 109 (351)
T 3ruf_A 77 QWSRFC-----FIEGDIRDLTTCEQVMKGVDHVLHQAA 109 (351)
T ss_dssp HHTTEE-----EEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred cCCceE-----EEEccCCCHHHHHHHhcCCCEEEECCc
Confidence 000000 000111111234556788999998874
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.091 Score=53.17 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=56.9
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||.|. +|.++|..|.. .|..|++..+.
T Consensus 161 Gk~vvVIG~s~iVG~p~A~lL~~---------------------------~gAtVtv~hs~------------------- 194 (285)
T 3l07_A 161 GAYAVVVGASNVVGKPVSQLLLN---------------------------AKATVTTCHRF------------------- 194 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHH---------------------------TTCEEEEECTT-------------------
T ss_pred CCEEEEECCCchhHHHHHHHHHH---------------------------CCCeEEEEeCC-------------------
Confidence 36899999876 89999999999 78899998642
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
|.++++.+++||+||.+++.|.- +. .+.++++.+|++-+.-+
T Consensus 195 --------------t~~L~~~~~~ADIVI~Avg~p~~--------------I~------~~~vk~GavVIDvgi~~ 236 (285)
T 3l07_A 195 --------------TTDLKSHTTKADILIVAVGKPNF--------------IT------ADMVKEGAVVIDVGINH 236 (285)
T ss_dssp --------------CSSHHHHHTTCSEEEECCCCTTC--------------BC------GGGSCTTCEEEECCCEE
T ss_pred --------------chhHHHhcccCCEEEECCCCCCC--------------CC------HHHcCCCcEEEEecccC
Confidence 23567789999999999987631 00 12458899999866543
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.017 Score=58.84 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=60.2
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+++||+|+| +|.||..++..+... +++++++ +|+++... .|..
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~--------------------------~~~eLvg~vd~~~~~~----~G~d----- 64 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRR--------------------------KDVELCAVLVRKGSSF----VDKD----- 64 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTC--------------------------SSEEEEEEBCCTTCTT----TTSB-----
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC--------------------------CCCEEEEEEecCCccc----cccc-----
Confidence 456999999 999999999988761 5677555 47753210 0100
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
..++.. ....++.+++|+++.+.++|++|-.+ .| ..+.+.+...+..+.-+|+.||-
T Consensus 65 -~gel~G-~~~~gv~v~~dl~~ll~~aDVvIDFT-~p-----------------~a~~~~~~~~l~~Gv~vViGTTG 121 (288)
T 3ijp_A 65 -ASILIG-SDFLGVRITDDPESAFSNTEGILDFS-QP-----------------QASVLYANYAAQKSLIHIIGTTG 121 (288)
T ss_dssp -GGGGTT-CSCCSCBCBSCHHHHTTSCSEEEECS-CH-----------------HHHHHHHHHHHHHTCEEEECCCC
T ss_pred -hHHhhc-cCcCCceeeCCHHHHhcCCCEEEEcC-CH-----------------HHHHHHHHHHHHcCCCEEEECCC
Confidence 000000 00124567789998899999988774 22 12233344445567777777775
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.073 Score=55.48 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=19.7
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
+||+|+|+|.+|..++..|..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~ 23 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSM 23 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999999887
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.01 Score=61.22 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=51.0
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||.|. ||.++|..|.. .|..|+++|++..+......... .
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~---------------------------~gAtVtv~nR~~~~l~~ra~~la---~--- 223 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLAN---------------------------DGATVYSVDVNNIQKFTRGESLK---L--- 223 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHT---------------------------TSCEEEEECSSEEEEEESCCCSS---C---
T ss_pred CCEEEEECCCcchHHHHHHHHHH---------------------------CCCEEEEEeCchHHHHhHHHHHh---h---
Confidence 36899999996 59999999998 78899999987444322111100 0
Q ss_pred HHHHhhhcCCceE-E--e--cCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLF-F--S--TDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~-~--~--~~~~~~~~~adviii~v~tp 118 (598)
. . ...+ . + .++.+.+.+||+||.+++.|
T Consensus 224 -----~-~-~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p 256 (320)
T 1edz_A 224 -----N-K-HHVEDLGEYSEDLLKKCSLDSDVVITGVPSE 256 (320)
T ss_dssp -----C-C-CEEEEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred -----h-c-ccccccccccHhHHHHHhccCCEEEECCCCC
Confidence 0 0 0111 1 2 57888999999999999876
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.085 Score=53.95 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=66.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||... +. . .....++.++++.
T Consensus 122 l~g~~vgIIG~----------G~IG~~~A~~l~~~G~~V~~~dr~~~-~~--~--------------~~~~~~l~ell~~ 174 (303)
T 1qp8_A 122 IQGEKVAVLGL----------GEIGTRVGKILAALGAQVRGFSRTPK-EG--P--------------WRFTNSLEEALRE 174 (303)
T ss_dssp CTTCEEEEESC----------STHHHHHHHHHHHTTCEEEEECSSCC-CS--S--------------SCCBSCSHHHHTT
T ss_pred CCCCEEEEEcc----------CHHHHHHHHHHHHCCCEEEEECCCcc-cc--C--------------cccCCCHHHHHhh
Confidence 46899999998 36788999999999999999998654 11 0 0123578889999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++.... .++ ++ ......|++..+++|..+
T Consensus 175 aDvV~l~~P~~~~t~~~i~-~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 175 ARAAVCALPLNKHTRGLVK-YQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp CSEEEECCCCSTTTTTCBC-HHHHTTSCTTCEEEECSC
T ss_pred CCEEEEeCcCchHHHHHhC-HHHHhhCCCCCEEEECCC
Confidence 999999998763 344 33 345567887779998876
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.028 Score=56.86 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=47.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHH---HHcCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQ---WNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~---~~~~~~~~~e 80 (598)
++|.|.|+ |++|..++..|.+ .|++|++++|++. +.+. +......+..
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~---------------------------~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~ 64 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLK---------------------------LGHPTYVFTRPNSSKTTLLDEFQSLGAIIVK 64 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHH---------------------------TTCCEEEEECTTCSCHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHH---------------------------CCCcEEEEECCCCchhhHHHHhhcCCCEEEE
Confidence 48999996 9999999999999 8999999999864 3222 2211111100
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..+.-..++.++++++|+||.+.+
T Consensus 65 ------------~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 65 ------------GELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp ------------CCTTCHHHHHHHHTTCSEEEECCC
T ss_pred ------------ecCCCHHHHHHHHcCCCEEEECCc
Confidence 001111234567889999998864
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.096 Score=53.01 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=56.9
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||.|. +|.++|..|.. .|..|++..+.
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~---------------------------~gAtVtv~hs~------------------- 194 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLL---------------------------GGCTVTVTHRF------------------- 194 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHH---------------------------TTCEEEEECTT-------------------
T ss_pred CCEEEEECCCchhHHHHHHHHHH---------------------------CCCeEEEEeCC-------------------
Confidence 36899999875 99999999999 78899998641
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
|.++++.+++||+||.+++.|.-- . .+.++++.+|++-+.-+
T Consensus 195 --------------T~~L~~~~~~ADIVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 195 --------------TRDLADHVSRADLVVVAAGKPGLV---------K-----------GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp --------------CSCHHHHHHTCSEEEECCCCTTCB---------C-----------GGGSCTTCEEEECCSCS
T ss_pred --------------CcCHHHHhccCCEEEECCCCCCCC---------C-----------HHHcCCCeEEEEecccc
Confidence 235667899999999999876310 0 13458999999866543
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.053 Score=55.12 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=49.2
Q ss_pred CCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 2 VQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 2 ~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
.++.+||+|+|+ |.+|..++..+.+ .|++ .++.+++.+. +.. +
T Consensus 4 ~~~~~~VaVvGasG~~G~~~~~~l~~---------------------------~g~~-~v~~VnP~~~-----g~~-i-- 47 (288)
T 1oi7_A 4 VNRETRVLVQGITGREGQFHTKQMLT---------------------------YGTK-IVAGVTPGKG-----GME-V-- 47 (288)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHH---------------------------HTCE-EEEEECTTCT-----TCE-E--
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHH---------------------------cCCe-EEEEECCCCC-----Cce-E--
Confidence 345679999999 9999999999888 5777 4455554321 100 0
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNT 117 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~t 117 (598)
.++....+++++.+ .+|++++++|.
T Consensus 48 ------------~G~~vy~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 48 ------------LGVPVYDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp ------------TTEEEESSHHHHHHHSCCSEEEECCCH
T ss_pred ------------CCEEeeCCHHHHhhcCCCCEEEEecCH
Confidence 24677788888887 89999999864
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=64.05 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.6
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
+|+|.|.| .|++|..++..|.+ .|++|+++++++.+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~---------------------------~G~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQT---------------------------GGHEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCCCC
Confidence 67999999 59999999999999 89999999998654
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.0093 Score=57.99 Aligned_cols=69 Identities=10% Similarity=0.218 Sum_probs=46.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.+|..++..+.. . .|++++ ++|.|++++...-.|
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~-------------------------~-~g~~iVg~~D~dp~k~g~~i~g--------- 124 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGF-------------------------G-ESFELRGFFDVDPEKVGRPVRG--------- 124 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCC-------------------------C-SSEEEEEEEESCTTTTTCEETT---------
T ss_pred CCEEEEECccHHHHHHHHhHhh-------------------------c-CCcEEEEEEeCCHHHHhhhhcC---------
Confidence 4689999999999998875332 2 256654 579988776432211
Q ss_pred HHHHhhhcCCceEEecCHHHHhc-cCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ-KAQLIFISVNT 117 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~adviii~v~t 117 (598)
-.+...+++.+.++ +.|++++|+|+
T Consensus 125 ---------v~V~~~~dl~ell~~~ID~ViIA~Ps 150 (211)
T 2dt5_A 125 ---------GVIEHVDLLPQRVPGRIEIALLTVPR 150 (211)
T ss_dssp ---------EEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred ---------CeeecHHhHHHHHHcCCCEEEEeCCc
Confidence 12334567777665 58999999765
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.07 Score=55.90 Aligned_cols=108 Identities=13% Similarity=0.180 Sum_probs=74.9
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
+..+|+|+|+. .....++..|.+.|++|.+||+.... .. .+.. .++....++.++++++
T Consensus 21 ~~mkIgiIGlG----------~mG~~~A~~L~~~G~~V~v~dr~~~~--~~-~l~~--------~g~~~~~s~~e~~~~a 79 (358)
T 4e21_A 21 QSMQIGMIGLG----------RMGADMVRRLRKGGHECVVYDLNVNA--VQ-ALER--------EGIAGARSIEEFCAKL 79 (358)
T ss_dssp -CCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHH--HH-HHHT--------TTCBCCSSHHHHHHHS
T ss_pred cCCEEEEECch----------HHHHHHHHHHHhCCCEEEEEeCCHHH--HH-HHHH--------CCCEEeCCHHHHHhcC
Confidence 46799999983 57789999999999999999985322 21 1110 1335677899999888
Q ss_pred ---CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh------hhhhhccceee
Q psy11160 473 ---HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNVH 522 (598)
Q Consensus 473 ---dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y~ 522 (598)
|+||+++......+ -+..+...+.+..+|+|..+.... +.+.+.|+.|.
T Consensus 80 ~~~DvVi~~vp~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 137 (358)
T 4e21_A 80 VKPRVVWLMVPAAVVDS-MLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYV 137 (358)
T ss_dssp CSSCEEEECSCGGGHHH-HHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEeCCHHHHHH-HHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEE
Confidence 99999998874333 235566666666799999998732 23334566553
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.02 Score=57.40 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=49.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH-------HHHHHHH---c
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE-------ERIRQWN---S 73 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~-------~~~~~~~---~ 73 (598)
+++|.|.|+ |++|..++..|.+ .|++|++++|++ ++.+.+. .
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~ 54 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIK---------------------------AGNPTYALVRKTITAANPETKEELIDNYQS 54 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHH---------------------------HTCCEEEEECCSCCSSCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHh---------------------------CCCcEEEEECCCcccCChHHHHHHHHHHHh
Confidence 468999997 9999999999999 789999999986 5554332 1
Q ss_pred CCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 74 NKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 74 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
....+.. ..+.-..++.++++++|+||.+.+.
T Consensus 55 ~~v~~v~------------~D~~d~~~l~~~~~~~d~vi~~a~~ 86 (307)
T 2gas_A 55 LGVILLE------------GDINDHETLVKAIKQVDIVICAAGR 86 (307)
T ss_dssp TTCEEEE------------CCTTCHHHHHHHHTTCSEEEECSSS
T ss_pred CCCEEEE------------eCCCCHHHHHHHHhCCCEEEECCcc
Confidence 1111100 0011112345678899999998753
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.097 Score=54.17 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~ 64 (598)
|||.|.| .|++|..++..|.+ .|+ +|+..|++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~---------------------------~g~~~v~~~d~~ 34 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTS---------------------------TTDHHIFEVHRQ 34 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------HCCCEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHh---------------------------CCCCEEEEECCC
Confidence 5899999 69999999999999 788 99999985
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.039 Score=56.81 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=67.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-...+++.|...|.+|.+||+.....+ . . . ...-..++.++++.
T Consensus 137 l~g~tvGIiG~----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~--~-~---------~-~~~~~~~l~ell~~ 193 (315)
T 3pp8_A 137 REEFSVGIMGA----------GVLGAKVAESLQAWGFPLRCWSRSRKSWP--G-V---------E-SYVGREELRAFLNQ 193 (315)
T ss_dssp STTCCEEEECC----------SHHHHHHHHHHHTTTCCEEEEESSCCCCT--T-C---------E-EEESHHHHHHHHHT
T ss_pred cCCCEEEEEee----------CHHHHHHHHHHHHCCCEEEEEcCCchhhh--h-h---------h-hhcccCCHHHHHhh
Confidence 47899999998 36788999999999999999998543211 0 0 0 01112578889999
Q ss_pred CCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCC--CCChh
Q psy11160 472 THAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRK--ILNHD 512 (598)
Q Consensus 472 adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~--i~d~~ 512 (598)
+|+|++++... +-+++=-......|++..+++|..+ +.|.+
T Consensus 194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~ 237 (315)
T 3pp8_A 194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEA 237 (315)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHH
Confidence 99999998744 3344322344567877778888765 34543
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.07 Score=54.35 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=62.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|+|+ |.+|..++..+.+ .|++ .++++++.+. +. .+
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~---------------------------~g~~-~V~~VnP~~~-----g~-~i----- 53 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLE---------------------------CGTK-IVGGVTPGKG-----GQ-NV----- 53 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHH---------------------------TTCC-EEEEECTTCT-----TC-EE-----
T ss_pred CCEEEEECCCCCHHHHHHHHHHh---------------------------CCCe-EEEEeCCCCC-----Cc-eE-----
Confidence 467889999 9999999999888 6777 5666665432 10 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.++....+++++.+ ++|++++++|.+ .+.+++++..+. .-..+|+..+.++..
T Consensus 54 ---------~G~~vy~sl~el~~~~~~Dv~ii~vp~~---------------~~~~~v~ea~~~-Gi~~vVi~t~G~~~~ 108 (294)
T 2yv1_A 54 ---------HGVPVFDTVKEAVKETDANASVIFVPAP---------------FAKDAVFEAIDA-GIELIVVITEHIPVH 108 (294)
T ss_dssp ---------TTEEEESSHHHHHHHHCCCEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHH
T ss_pred ---------CCEeeeCCHHHHhhcCCCCEEEEccCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHH
Confidence 24667788888887 899999998643 344555555442 222345544445544
Q ss_pred HHHHH
Q psy11160 162 AAESI 166 (598)
Q Consensus 162 ~~~~~ 166 (598)
..+++
T Consensus 109 ~~~~l 113 (294)
T 2yv1_A 109 DTMEF 113 (294)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.032 Score=55.97 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=49.3
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHH--HHHHcCCCCC
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERI--RQWNSNKLPI 78 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~--~~~~~~~~~~ 78 (598)
.+.++|.|.|+ |.+|..++..|.+ .| ++|+++++++++. +.+......+
T Consensus 3 ~~~~~ilVtGatG~iG~~l~~~L~~---------------------------~g~~~V~~~~R~~~~~~~~~l~~~~~~~ 55 (299)
T 2wm3_A 3 VDKKLVVVFGGTGAQGGSVARTLLE---------------------------DGTFKVRVVTRNPRKKAAKELRLQGAEV 55 (299)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHH---------------------------HCSSEEEEEESCTTSHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHh---------------------------cCCceEEEEEcCCCCHHHHHHHHCCCEE
Confidence 34578999998 9999999999998 67 9999999987653 2232211111
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
.. ..+.-..++.++++++|+||.+.+
T Consensus 56 ~~------------~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 56 VQ------------GDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp EE------------CCTTCHHHHHHHHTTCSEEEECCC
T ss_pred EE------------ecCCCHHHHHHHHhcCCEEEEeCC
Confidence 00 001111234567888999998864
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.094 Score=52.71 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=28.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.|+|.|.|+ |++|..++..|++ .|++|++++++...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~ 38 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQ---------------------------NNWHAVGCGFRRAR 38 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHT---------------------------TTCEEEEEC-----
T ss_pred CCeEEEECCCcHHHHHHHHHHHh---------------------------CCCeEEEEccCCCC
Confidence 368999997 9999999999999 89999999987644
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.028 Score=56.97 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=49.1
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH------HHHHHHH---c
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE------ERIRQWN---S 73 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~------~~~~~~~---~ 73 (598)
++|+|.|.|+ |++|..++..|.+ .|++|+++++++ ++.+.+. .
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~~~~~~~~~l~~~~~ 55 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLS---------------------------FSHPTFIYARPLTPDSTPSSVQLREEFRS 55 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHH---------------------------TTCCEEEEECCCCTTCCHHHHHHHHHHHH
T ss_pred cccEEEEEcCCchhHHHHHHHHHh---------------------------CCCcEEEEECCcccccChHHHHHHHHhhc
Confidence 3578999996 9999999999999 899999999985 4444332 1
Q ss_pred CCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 74 NKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 74 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
....+.. ..+.-..++.++++++|+||.+.+
T Consensus 56 ~~v~~v~------------~D~~d~~~l~~a~~~~d~vi~~a~ 86 (321)
T 3c1o_A 56 MGVTIIE------------GEMEEHEKMVSVLKQVDIVISALP 86 (321)
T ss_dssp TTCEEEE------------CCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCcEEEE------------ecCCCHHHHHHHHcCCCEEEECCC
Confidence 1111100 011111235567889999999864
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.083 Score=55.80 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=68.3
Q ss_pred cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 390 NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 390 ~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
..+.+++|||+|+ ..-...+++.|...|.+|.+|||..... . .+ ....++.+++
T Consensus 115 ~~l~gktvGIIGl----------G~IG~~vA~~l~a~G~~V~~~d~~~~~~---~---------~~----~~~~sl~ell 168 (381)
T 3oet_A 115 FSLRDRTIGIVGV----------GNVGSRLQTRLEALGIRTLLCDPPRAAR---G---------DE----GDFRTLDELV 168 (381)
T ss_dssp CCGGGCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECHHHHHT---T---------CC----SCBCCHHHHH
T ss_pred CccCCCEEEEEeE----------CHHHHHHHHHHHHCCCEEEEECCChHHh---c---------cC----cccCCHHHHH
Confidence 3578999999998 3678899999999999999999942111 0 01 1246788999
Q ss_pred cCCCEEEEEeeccc-----hhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 470 KNTHAIVVCTEWDE-----FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 470 ~~adalii~t~~~~-----f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
+.+|+|++++.... -++ ++-. ..+.|++..+++|+.+ +.|.+.
T Consensus 169 ~~aDiV~l~~Plt~~g~~~T~~li~~~-~l~~mk~gailIN~aRG~vvde~a 219 (381)
T 3oet_A 169 QEADVLTFHTPLYKDGPYKTLHLADET-LIRRLKPGAILINACRGPVVDNAA 219 (381)
T ss_dssp HHCSEEEECCCCCCSSTTCCTTSBCHH-HHHHSCTTEEEEECSCGGGBCHHH
T ss_pred hhCCEEEEcCcCCccccccchhhcCHH-HHhcCCCCcEEEECCCCcccCHHH
Confidence 99999999987542 122 4443 4456777778888765 455433
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.11 Score=53.15 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=68.7
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCC-eEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA-KLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~-~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
..+|+|+|+ ......++..|.+.|+ +|.+||+....+.. +.+.. .++....++.++++++
T Consensus 24 ~~~I~iIG~----------G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~-~~~~~--------~g~~~~~~~~e~~~~a 84 (312)
T 3qsg_A 24 AMKLGFIGF----------GEAASAIASGLRQAGAIDMAAYDAASAESWR-PRAEE--------LGVSCKASVAEVAGEC 84 (312)
T ss_dssp -CEEEEECC----------SHHHHHHHHHHHHHSCCEEEEECSSCHHHHH-HHHHH--------TTCEECSCHHHHHHHC
T ss_pred CCEEEEECc----------cHHHHHHHHHHHHCCCCeEEEEcCCCCHHHH-HHHHH--------CCCEEeCCHHHHHhcC
Confidence 468999997 3577899999999999 99999985311111 11110 1346678899999999
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
|+||+++.-+...+ -...+...+.+..+|+|...+.
T Consensus 85 DvVi~~vp~~~~~~-~~~~l~~~l~~~~ivvd~st~~ 120 (312)
T 3qsg_A 85 DVIFSLVTAQAALE-VAQQAGPHLCEGALYADFTSCS 120 (312)
T ss_dssp SEEEECSCTTTHHH-HHHHHGGGCCTTCEEEECCCCC
T ss_pred CEEEEecCchhHHH-HHHhhHhhcCCCCEEEEcCCCC
Confidence 99999998776544 2356666666667999988765
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.11 Score=54.02 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=70.1
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+. .-+..+++.|..-|.+|.+|||......... . ....++.++++.
T Consensus 139 l~g~tvGIiG~G----------~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-------------~-~~~~~l~ell~~ 194 (334)
T 3kb6_A 139 LNRLTLGVIGTG----------RIGSRVAMYGLAFGMKVLCYDVVKREDLKEK-------------G-CVYTSLDELLKE 194 (334)
T ss_dssp GGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHHHHT-------------T-CEECCHHHHHHH
T ss_pred ecCcEEEEECcc----------hHHHHHHHhhcccCceeeecCCccchhhhhc-------------C-ceecCHHHHHhh
Confidence 468999999983 5778899999999999999999765432111 1 234678999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|+++.+.-. -++ +|-+.+. .|++..+++-+.+ +.|.+.+
T Consensus 195 sDivslh~Plt~~T~~li~~~~l~-~mk~~a~lIN~aRG~iVde~aL 240 (334)
T 3kb6_A 195 SDVISLHVPYTKETHHMINEERIS-LMKDGVYLINTARGKVVDTDAL 240 (334)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHH-HSCTTEEEEECSCGGGBCHHHH
T ss_pred CCEEEEcCCCChhhccCcCHHHHh-hcCCCeEEEecCccccccHHHH
Confidence 999999887543 333 5655554 6777667776654 5666544
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.046 Score=57.11 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=22.6
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcc
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQV 33 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~ 33 (598)
+++||+|+| .|++|..+...|.. .|++++
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~-~p~~el 32 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAK-HPYLEL 32 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTT-CSSEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHh-CCCcEE
Confidence 357999999 79999999998876 344433
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.015 Score=60.33 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.2
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.+||+|||+|.||..++..+..
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~ 24 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLE 24 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH
T ss_pred eeEEEEEcCCHHHHHHHHHHHh
Confidence 4689999999999999999987
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.064 Score=54.54 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=29.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
|+|.|.| .|++|..++..|++ .|++|+++|++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~ 34 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALS---------------------------QGIDLIVFDNL 34 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEECC
T ss_pred cEEEEeCCCchhHHHHHHHHHh---------------------------CCCEEEEEeCC
Confidence 6899999 59999999999999 89999999974
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.26 Score=49.94 Aligned_cols=35 Identities=14% Similarity=0.366 Sum_probs=31.0
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.++|.|.| .|++|..++..|.+ .|++|+++.++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~---------------------------~G~~V~~~~r~~~ 44 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQ---------------------------KGYAVNTTVRDPD 44 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCTT
T ss_pred CCEEEEECCchHHHHHHHHHHHH---------------------------CCCEEEEEEcCcc
Confidence 36899999 69999999999999 8999999888764
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.099 Score=54.17 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=65.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||..... ..+ + ..+..++.++++.
T Consensus 144 l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~------------~~~~~~l~ell~~ 199 (333)
T 1j4a_A 144 VRDQVVGVVGT----------GHIGQVFMQIMEGFGAKVITYDIFRNPE-LEK-K------------GYYVDSLDDLYKQ 199 (333)
T ss_dssp GGGSEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH-T------------TCBCSCHHHHHHH
T ss_pred CCCCEEEEEcc----------CHHHHHHHHHHHHCCCEEEEECCCcchh-HHh-h------------CeecCCHHHHHhh
Confidence 36889999998 3577889999999999999999976543 211 1 1233478889999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++.... .++ ++ ....+.|++..+++|...
T Consensus 200 aDvV~l~~p~~~~t~~li~-~~~l~~mk~ga~lIn~ar 236 (333)
T 1j4a_A 200 ADVISLHVPDVPANVHMIN-DESIAKMKQDVVIVNVSR 236 (333)
T ss_dssp CSEEEECSCCCGGGTTCBS-HHHHHHSCTTEEEEECSC
T ss_pred CCEEEEcCCCcHHHHHHHh-HHHHhhCCCCcEEEECCC
Confidence 999999988643 333 33 334456776678887654
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.036 Score=56.21 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=32.5
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
||.+.++|+|||.|..|+..|..|++ .|++|+++|.++
T Consensus 1 m~~~~~~vvIIG~G~aGl~aA~~l~~---------------------------~g~~v~lie~~~ 38 (335)
T 2zbw_A 1 MAADHTDVLIVGAGPTGLFAGFYVGM---------------------------RGLSFRFVDPLP 38 (335)
T ss_dssp --CCEEEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESSS
T ss_pred CCCCcCcEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEeCCC
Confidence 66666789999999999999999999 789999999864
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.46 Score=48.42 Aligned_cols=98 Identities=9% Similarity=0.048 Sum_probs=62.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++|..||+|..|.+.. .+++. .|.+|+++|+|++.++..++.
T Consensus 122 ~g~rVLDIGcG~G~~ta~-~lA~~--------------------------~ga~V~gIDis~~~l~~Ar~~--------- 165 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGI-LLSHV--------------------------YGMRVNVVEIEPDIAELSRKV--------- 165 (298)
T ss_dssp TTCEEEEECCCSSCHHHH-HHHHT--------------------------TCCEEEEEESSHHHHHHHHHH---------
T ss_pred CcCEEEEECCCccHHHHH-HHHHc--------------------------cCCEEEEEECCHHHHHHHHHH---------
Confidence 457999999999765533 34551 578999999999999876642
Q ss_pred HHHHhh-hcCCceEE-ecCHHHH-hccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKK-TRDVNLFF-STDIKSA-IQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~-~~~~~~~~-~~~~~~~-~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+.+ .. .++++ ..|..+. -...|+|+++...+ ....+++.+.+.+++|-.++..+
T Consensus 166 ---~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~~---------------d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 166 ---IEGLGV-DGVNVITGDETVIDGLEFDVLMVAALAE---------------PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ---HHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTCS---------------CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ---HHhcCC-CCeEEEECchhhCCCCCcCEEEECCCcc---------------CHHHHHHHHHHHcCCCcEEEEEc
Confidence 000 01 23333 2333221 14579999874322 14567889999999988777654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.019 Score=59.43 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=48.5
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+|+|.|.| .|++|..++..|.+ . |++|+++++++++...+... ++
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~---------------------------~~g~~V~~~~r~~~~~~~~~~~------~~ 70 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILE---------------------------TTDWEVFGMDMQTDRLGDLVKH------ER 70 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHH---------------------------HSSCEEEEEESCCTTTGGGGGS------TT
T ss_pred CCEEEEECCCChHHHHHHHHHHh---------------------------CCCCEEEEEeCChhhhhhhccC------CC
Confidence 47899999 59999999999998 5 89999999987665443321 00
Q ss_pred hHHHHhhhcCCceE-EecCHHHHhccCcEEEEecC
Q psy11160 83 LDEVVKKTRDVNLF-FSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~~adviii~v~ 116 (598)
+. .+...+. -..++.++++++|+||-+..
T Consensus 71 v~-----~~~~Dl~~d~~~~~~~~~~~d~Vih~A~ 100 (372)
T 3slg_A 71 MH-----FFEGDITINKEWVEYHVKKCDVILPLVA 100 (372)
T ss_dssp EE-----EEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred eE-----EEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence 00 0000111 11223456778999998764
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.11 Score=53.96 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=68.8
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||..... ..+ ...+ .++.++++.
T Consensus 143 l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-------------~~~~-~~l~ell~~ 197 (333)
T 1dxy_A 143 LGQQTVGVMGT----------GHIGQVAIKLFKGFGAKVIAYDPYPMKG-DHP-------------DFDY-VSLEDLFKQ 197 (333)
T ss_dssp GGGSEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCSS-CCT-------------TCEE-CCHHHHHHH
T ss_pred CCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCCcchh-hHh-------------cccc-CCHHHHHhc
Confidence 46899999998 3678889999999999999999976432 110 1122 378899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|++++.... .++ ++ ....+.|++..+++|... +.|.+.+
T Consensus 198 aDvV~~~~P~~~~t~~li~-~~~l~~mk~ga~lIn~srg~~vd~~aL 243 (333)
T 1dxy_A 198 SDVIDLHVPGIEQNTHIIN-EAAFNLMKPGAIVINTARPNLIDTQAM 243 (333)
T ss_dssp CSEEEECCCCCGGGTTSBC-HHHHHHSCTTEEEEECSCTTSBCHHHH
T ss_pred CCEEEEcCCCchhHHHHhC-HHHHhhCCCCcEEEECCCCcccCHHHH
Confidence 999999987654 333 33 334556877778888765 3454433
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.039 Score=57.93 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~ 26 (598)
|..+.++|+|||.|..|+.+|..|++
T Consensus 1 M~~~~~~V~IVGaG~aGl~~A~~L~~ 26 (397)
T 2vou_A 1 MSPTTDRIAVVGGSISGLTAALMLRD 26 (397)
T ss_dssp -CCCCSEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHh
Confidence 44445789999999999999999999
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.056 Score=54.87 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=64.3
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEe-cCChhhhccCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSI-LDDPYDTVKNT 472 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~al~~a 472 (598)
..+|+|+|+. .....++..|.+.|.+|.+||+.....+. +.. .| ... ..++.++++++
T Consensus 7 ~~~I~iIG~G----------~mG~~~a~~l~~~G~~V~~~dr~~~~~~~---~~~----~g----~~~~~~~~~e~~~~a 65 (303)
T 3g0o_A 7 DFHVGIVGLG----------SMGMGAARSCLRAGLSTWGADLNPQACAN---LLA----EG----ACGAAASAREFAGVV 65 (303)
T ss_dssp CCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHH---HHH----TT----CSEEESSSTTTTTTC
T ss_pred CCeEEEECCC----------HHHHHHHHHHHHCCCeEEEEECCHHHHHH---HHH----cC----CccccCCHHHHHhcC
Confidence 4689999973 57788999999999999999985332111 110 12 233 67889999999
Q ss_pred CEEEEEeeccc-hhhccH--HHHHhccCCCcEEEecCCCC
Q psy11160 473 HAIVVCTEWDE-FVTLDY--KRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 473 dalii~t~~~~-f~~ld~--~~l~~~m~~~~iI~D~r~i~ 509 (598)
|+||+++..+. .+..=+ +.+...+++..+|+|..++.
T Consensus 66 Dvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~ 105 (303)
T 3g0o_A 66 DALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTIS 105 (303)
T ss_dssp SEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCC
T ss_pred CEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCC
Confidence 99999998753 222100 22334455566999998764
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.22 Score=51.16 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=53.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC---HHHHHHHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS---EERIRQWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~---~~~~~~~~~~~~~~~e 80 (598)
.+++.|+|+|-+|.+++..|++ .|. +|++++|+ .++.+.+.+.
T Consensus 148 gk~~lVlGAGGaaraia~~L~~---------------------------~G~~~v~v~nRt~~~~~~a~~la~~------ 194 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAI---------------------------EGIKEIKLFNRKDDFFEKAVAFAKR------ 194 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEEECSSTHHHHHHHHHHH------
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------cCCCEEEEEECCCchHHHHHHHHHH------
Confidence 3689999999999999999999 787 89999999 8888776531
Q ss_pred CChHHHHhhhcCCceEEe--cCH---HHHhccCcEEEEecCCCC
Q psy11160 81 PGLDEVVKKTRDVNLFFS--TDI---KSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--~~~---~~~~~~adviii~v~tp~ 119 (598)
+.......+... .+. .+.+.++|+||-|+|...
T Consensus 195 ------~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm 232 (312)
T 3t4e_A 195 ------VNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGM 232 (312)
T ss_dssp ------HHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTS
T ss_pred ------hhhccCcceEEechHhhhhhHhhccCceEEEECCcCCC
Confidence 110001112221 232 456789999999976543
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.023 Score=55.17 Aligned_cols=71 Identities=11% Similarity=0.258 Sum_probs=45.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHH-HHHH-HHcCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEE-RIRQ-WNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~-~~~~-~~~~~~~~~e~ 81 (598)
..+++|+|+|.+|..++..+.. ...|++++ ++|.|++ ++.. .-.| .|
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~-------------------------~~~g~~iVg~~D~dp~~kiG~~~i~G-vp---- 133 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFH-------------------------DRNKMQISMAFDLDSNDLVGKTTEDG-IP---- 133 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCC-------------------------TTSSEEEEEEEECTTSTTTTCBCTTC-CB----
T ss_pred CCEEEEECcCHHHHHHHHhhhc-------------------------ccCCeEEEEEEeCCchhccCceeECC-eE----
Confidence 4689999999999998765321 12577755 5799987 6532 1112 12
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
+....++++.++ +.|++++|+|..
T Consensus 134 -------------V~~~~dL~~~v~~~~Id~vIIAvPs~ 159 (212)
T 3keo_A 134 -------------VYGISTINDHLIDSDIETAILTVPST 159 (212)
T ss_dssp -------------EEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred -------------EeCHHHHHHHHHHcCCCEEEEecCch
Confidence 233456666665 489999998653
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.17 Score=55.16 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=68.3
Q ss_pred CCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYE 80 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e 80 (598)
+.+++|.|||+|-.|.+ +|..|.+ .|++|+++|..... .+.+.+....
T Consensus 17 ~~~~~v~viGiG~sG~s~~A~~l~~---------------------------~G~~V~~~D~~~~~~~~~l~~~gi~--- 66 (491)
T 2f00_A 17 RRVRHIHFVGIGGAGMGGIAEVLAN---------------------------EGYQISGSDLAPNPVTQQLMNLGAT--- 66 (491)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHH---------------------------TTCEEEEECSSCCHHHHHHHHTTCE---
T ss_pred ccCCEEEEEEcCHHHHHHHHHHHHh---------------------------CCCeEEEECCCCCHHHHHHHHCCCE---
Confidence 45678999999999997 8999988 89999999986432 2333321111
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHH-------HHHHHHHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKY-------VEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~ivv 153 (598)
+..-.+. +.++++|+||++-.-|.+ .+.+.. +....+.++..++...+|-
T Consensus 67 --------------~~~g~~~-~~~~~a~~vv~s~~i~~~--------~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~ 123 (491)
T 2f00_A 67 --------------IYFNHRP-ENVRDASVVVVSSAISAD--------NPEIVAAHEARIPVIRRAEMLAELMRFRHGIA 123 (491)
T ss_dssp --------------EESSCCG-GGGTTCSEEEECTTCCTT--------CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEE
T ss_pred --------------EECCCCH-HHcCCCCEEEECCCCCCC--------CHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEE
Confidence 1111122 246789998887433321 111111 0111233444455457888
Q ss_pred EecCCchHHHHHHHH
Q psy11160 154 EKSTVPVRAAESIMN 168 (598)
Q Consensus 154 ~~STv~~~~~~~~~~ 168 (598)
+..|---+||-.+..
T Consensus 124 VTGTnGKTTTt~ml~ 138 (491)
T 2f00_A 124 IAGTHGKTTTTAMVS 138 (491)
T ss_dssp EESSSCHHHHHHHHH
T ss_pred EECCCCHHHHHHHHH
Confidence 889988888766554
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.059 Score=54.87 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCCCCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|-.+.++|.|.| .|++|..++..|.+ .|++|++++++++
T Consensus 1 ~~~~~~~vlVTGatGfIG~~l~~~L~~---------------------------~G~~V~~~~r~~~ 40 (337)
T 2c29_D 1 MGSQSETVCVTGASGFIGSWLVMRLLE---------------------------RGYTVRATVRDPT 40 (337)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCTT
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHH---------------------------CCCEEEEEECCcc
Confidence 333457899998 79999999999999 8999999998876
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.25 Score=44.32 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=52.6
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
+.++|+|.|++-+++ +.+-.+++.|.+.|++|...+|... ++ . +.....++.++.+..
T Consensus 13 ~p~~IavIGaS~~~g------~~G~~~~~~L~~~G~~V~~vnp~~~--~i-----------~---G~~~~~s~~el~~~v 70 (138)
T 1y81_A 13 EFRKIALVGASKNPA------KYGNIILKDLLSKGFEVLPVNPNYD--EI-----------E---GLKCYRSVRELPKDV 70 (138)
T ss_dssp -CCEEEEETCCSCTT------SHHHHHHHHHHHTTCEEEEECTTCS--EE-----------T---TEECBSSGGGSCTTC
T ss_pred CCCeEEEEeecCCCC------CHHHHHHHHHHHCCCEEEEeCCCCC--eE-----------C---CeeecCCHHHhCCCC
Confidence 568999999987774 6889999999999999888899642 11 1 235556788888889
Q ss_pred CEEEEEeec
Q psy11160 473 HAIVVCTEW 481 (598)
Q Consensus 473 dalii~t~~ 481 (598)
|++++++.-
T Consensus 71 Dlvii~vp~ 79 (138)
T 1y81_A 71 DVIVFVVPP 79 (138)
T ss_dssp CEEEECSCH
T ss_pred CEEEEEeCH
Confidence 999999984
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.047 Score=56.96 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=20.0
Q ss_pred CCCCCceEEEEC-CChhHHHHHHHHHH
Q psy11160 1 MVQTISHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 1 m~~~~~~I~viG-~G~vG~~~a~~la~ 26 (598)
||+ ++||+|+| .|++|..+...|..
T Consensus 1 M~~-~~kV~IiGAtG~iG~~llr~L~~ 26 (345)
T 2ozp_A 1 MTG-KKTLSIVGASGYAGGEFLRLALS 26 (345)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHT
T ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHc
Confidence 443 47999999 69999999999987
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.06 Score=55.24 Aligned_cols=73 Identities=8% Similarity=0.164 Sum_probs=49.4
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH----HHHHHHH---cCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE----ERIRQWN---SNKLP 77 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~----~~~~~~~---~~~~~ 77 (598)
|+|.|.|+ |++|..++..|.+ .|++|++++|++ ++.+.+. .....
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~ 63 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLD---------------------------AHRPTYILARPGPRSPSKAKIFKALEDKGAI 63 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHH---------------------------TTCCEEEEECSSCCCHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCcHHHHHHHHHHHH---------------------------CCCCEEEEECCCCCChhHHHHHHHHHhCCcE
Confidence 68999998 9999999999999 789999999976 5555332 11111
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCC
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNT 117 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~t 117 (598)
+.. ..+.-..++.++++ ++|+||.+.+.
T Consensus 64 ~~~------------~Dl~d~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 64 IVY------------GLINEQEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp EEE------------CCTTCHHHHHHHHHHTTCCEEEECCCG
T ss_pred EEE------------eecCCHHHHHHHHhhCCCCEEEECCch
Confidence 111 11111123455677 89999998643
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.011 Score=57.31 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=31.1
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEER 67 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~ 67 (598)
++|.|.| .|.+|..++..|++ .|+ +|+++++++++
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~---------------------------~G~~~~V~~~~r~~~~ 56 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILE---------------------------QGLFSKVTLIGRRKLT 56 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHH---------------------------HTCCSEEEEEESSCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHc---------------------------CCCCCEEEEEEcCCCC
Confidence 6899999 59999999999999 788 99999998654
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.076 Score=53.60 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=65.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++.|+|+|-+|.++|..|++ .| +|++++++.++.+.+.+.. .
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~---------------------------~G-~V~v~~r~~~~~~~l~~~~--------~ 171 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAK---------------------------DN-NIIIANRTVEKAEALAKEI--------A 171 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTS---------------------------SS-EEEEECSSHHHHHHHHHHH--------H
T ss_pred CCEEEEECchHHHHHHHHHHHH---------------------------CC-CEEEEECCHHHHHHHHHHH--------h
Confidence 3689999999999999999999 89 9999999999887765310 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
..........+..+ +..+.+.++|++|.++|.+..... ....+ . -...++++.+|++.++.|.
T Consensus 172 ~~~~~~~~~~~d~~-~~~~~~~~~DilVn~ag~~~~~~~----~~~~~---~-----~~~~l~~~~~v~Dv~y~p~ 234 (287)
T 1nvt_A 172 EKLNKKFGEEVKFS-GLDVDLDGVDIIINATPIGMYPNI----DVEPI---V-----KAEKLREDMVVMDLIYNPL 234 (287)
T ss_dssp HHHTCCHHHHEEEE-CTTCCCTTCCEEEECSCTTCTTCC----SSCCS---S-----CSTTCCSSSEEEECCCSSS
T ss_pred hhcccccceeEEEe-eHHHhhCCCCEEEECCCCCCCCCC----CCCCC---C-----CHHHcCCCCEEEEeeeCCc
Confidence 00000000012222 224457789999999876542110 00000 0 0124567888888887554
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.14 Score=51.93 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=33.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQ 70 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~ 70 (598)
|+|.|.|+ |++|..++..|.+ . |++|+++++++++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~---------------------------~~g~~V~~~~r~~~~~~~ 40 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLR---------------------------EDHYEVYGLDIGSDAISR 40 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHH---------------------------STTCEEEEEESCCGGGGG
T ss_pred CeEEEECCCcHHHHHHHHHHHH---------------------------hCCCEEEEEeCCcchHHH
Confidence 58999997 9999999999999 6 8999999998766543
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.18 Score=54.69 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYE 80 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e 80 (598)
+.+++|.|||+|-.|.+ +|..|.+ .|++|+++|..... .+.+.+...
T Consensus 16 ~~~~~i~viG~G~sG~s~~A~~l~~---------------------------~G~~V~~~D~~~~~~~~~l~~~gi---- 64 (475)
T 1p3d_A 16 RRVQQIHFIGIGGAGMSGIAEILLN---------------------------EGYQISGSDIADGVVTQRLAQAGA---- 64 (475)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHH---------------------------HTCEEEEEESCCSHHHHHHHHTTC----
T ss_pred ccCCEEEEEeecHHHHHHHHHHHHh---------------------------CCCEEEEECCCCCHHHHHHHhCCC----
Confidence 44678999999999997 9999988 79999999986532 233332111
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCC---CCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN---GKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.+..-.+. +.++++|+||++-.-|.+.... .+.+-+-+.. .+.++..++...+|-+..|
T Consensus 65 -------------~~~~g~~~-~~~~~a~~vv~s~~i~~~~~~~~~a~~~~i~vl~~----~~~l~~~~~~~~vI~VTGT 126 (475)
T 1p3d_A 65 -------------KIYIGHAE-EHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQR----AQMLAEIMRFRHGIAVAGT 126 (475)
T ss_dssp -------------EEEESCCG-GGGTTCSEEEECTTSCTTCHHHHHHHHTTCCEEEH----HHHHHHHHHTSEEEEEESS
T ss_pred -------------EEECCCCH-HHcCCCCEEEECCCCCCCCHHHHHHHHcCCcEEEH----HHHHHHHhcCCCEEEEECC
Confidence 11111223 2467899988874333210000 0000011111 1233334444578888899
Q ss_pred CchHHHHHHHH
Q psy11160 158 VPVRAAESIMN 168 (598)
Q Consensus 158 v~~~~~~~~~~ 168 (598)
---+||-.+..
T Consensus 127 nGKTTTt~ml~ 137 (475)
T 1p3d_A 127 HGKTTTTAMIS 137 (475)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888866554
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.11 Score=54.45 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~ 26 (598)
+||+|+| .|++|..+...|..
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~ 38 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLAN 38 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHT
T ss_pred cEEEEECcCCHHHHHHHHHHHc
Confidence 6899999 89999999999987
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.64 E-value=0.25 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=19.7
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
+||+|+|+|++|..++..|..
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~ 24 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQ 24 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHT
T ss_pred eEEEEECcCHHHHHHHHHHhC
Confidence 699999999999999999887
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.15 Score=52.07 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=62.1
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+..++|+|+|+ |.+|..++..+.+ .|++ .++.+++.+. +. .+
T Consensus 11 ~~~~~vvV~Gasg~~G~~~~~~l~~---------------------------~g~~-~v~~VnP~~~-----g~-~i--- 53 (297)
T 2yv2_A 11 DSETRVLVQGITGREGSFHAKAMLE---------------------------YGTK-VVAGVTPGKG-----GS-EV--- 53 (297)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHH---------------------------HTCE-EEEEECTTCT-----TC-EE---
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHh---------------------------CCCc-EEEEeCCCCC-----Cc-eE---
Confidence 34567888898 9999999998888 5777 5566655422 10 00
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--c-CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--K-AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.++.+..+++++.+ . +|++++++|.+. +.+++++..+. .-..+|+..+.+
T Consensus 54 -----------~G~~vy~sl~el~~~~~~~DvaIi~vp~~~---------------~~~~v~ea~~~-Gi~~vVi~t~G~ 106 (297)
T 2yv2_A 54 -----------HGVPVYDSVKEALAEHPEINTSIVFVPAPF---------------APDAVYEAVDA-GIRLVVVITEGI 106 (297)
T ss_dssp -----------TTEEEESSHHHHHHHCTTCCEEEECCCGGG---------------HHHHHHHHHHT-TCSEEEECCCCC
T ss_pred -----------CCEeeeCCHHHHhhcCCCCCEEEEecCHHH---------------HHHHHHHHHHC-CCCEEEEECCCC
Confidence 24677788887776 4 999999986542 44455555443 222355555555
Q ss_pred chHHHHHH
Q psy11160 159 PVRAAESI 166 (598)
Q Consensus 159 ~~~~~~~~ 166 (598)
+....+++
T Consensus 107 ~~~~~~~l 114 (297)
T 2yv2_A 107 PVHDTMRF 114 (297)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 54333333
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.17 Score=51.96 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=64.4
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||...... +. ..++.++++.
T Consensus 142 l~g~~vgIIG~----------G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----------------~~-~~~l~ell~~ 193 (311)
T 2cuk_A 142 LQGLTLGLVGM----------GRIGQAVAKRALAFGMRVVYHARTPKPLP-----------------YP-FLSLEELLKE 193 (311)
T ss_dssp CTTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCSSS-----------------SC-BCCHHHHHHH
T ss_pred CCCCEEEEEEE----------CHHHHHHHHHHHHCCCEEEEECCCCcccc-----------------cc-cCCHHHHHhh
Confidence 46899999998 35778899999999999999999654221 11 2567889999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++... +.++ ++- .....|++..+++|..+
T Consensus 194 aDvV~l~~p~~~~t~~li~~-~~l~~mk~ga~lin~sr 230 (311)
T 2cuk_A 194 ADVVSLHTPLTPETHRLLNR-ERLFAMKRGAILLNTAR 230 (311)
T ss_dssp CSEEEECCCCCTTTTTCBCH-HHHTTSCTTCEEEECSC
T ss_pred CCEEEEeCCCChHHHhhcCH-HHHhhCCCCcEEEECCC
Confidence 99999998765 3333 333 34456777778888766
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.11 Score=54.39 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=24.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceecc
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVD 37 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~ 37 (598)
|.||+|||+ ||+|.-+...|.. .|.+++..+.
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~-hP~~el~~l~ 45 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKN-HPEAKITYLS 45 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHH-CTTEEEEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHc-CCCcEEEEEe
Confidence 468999975 9999999999998 4555544433
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.13 Score=52.60 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=31.1
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+|+|.|.|+ |++|..++..|++ .|++|+++++++
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~ 61 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLK---------------------------LDQKVVGLDNFA 61 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEECCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCC
Confidence 478999998 9999999999999 899999999864
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.058 Score=55.05 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=30.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
..+|+|||.|..|+++|..|++ .|++|+++|++
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~---------------------------~G~~V~vlE~~ 36 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAA---------------------------GGHEVLVAEAA 36 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEeCC
Confidence 4689999999999999999999 78999999875
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.051 Score=60.17 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=35.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
++|.|+|+|.+|..+|..|.+ .|++|+++|.|+++++.+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~---------------------------~g~~v~vid~d~~~~~~~ 387 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDR---------------------------KPVPFILIDRQESPVCND 387 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESSCCSSCCS
T ss_pred CCEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEECChHHHhhc
Confidence 689999999999999999999 899999999999887643
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.038 Score=58.75 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhC----CCCcceecccc
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKC----PNIQVTVVDKR 39 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~----~~~~~~~~~~~ 39 (598)
|.+++++|+|||+|..|++.|..|++.- |+++|+++|++
T Consensus 1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~ 43 (470)
T 3i6d_A 1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS 43 (470)
T ss_dssp ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSS
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECC
Confidence 5555678999999999999999999942 33555555554
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.1 Score=51.32 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=64.6
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChh-------h-----hhhhhhcccccccCCCc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPS-------Q-----IIQDLKELDPELLDHNA 458 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~-------~-----~~~~~~~~~~~~~~~~~ 458 (598)
.+..++|+|+|+ .+.+..++..|.+.|.+|.+||...... + .. .+.. ..+.
T Consensus 16 ~~~~~kIgiIG~----------G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~-- 78 (245)
T 3dtt_A 16 YFQGMKIAVLGT----------GTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFS-QWLP----EHPH-- 78 (245)
T ss_dssp ---CCEEEEECC----------SHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHH-HHGG----GSTT--
T ss_pred ccCCCeEEEECC----------CHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhh-HHHh----hcCc--
Confidence 457899999997 3678899999999999999999753320 0 11 1100 0111
Q ss_pred eEecCChhhhccCCCEEEEEeeccchhhccHHHH-HhccCCCcEEEecCCCC
Q psy11160 459 VSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRI-YEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 459 ~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l-~~~m~~~~iI~D~r~i~ 509 (598)
....++.++++++|+||+++......+. ...+ ...+ +..+|+|..|-+
T Consensus 79 -~~~~~~~e~~~~aDvVilavp~~~~~~~-~~~i~~~~l-~g~ivi~~s~~~ 127 (245)
T 3dtt_A 79 -VHLAAFADVAAGAELVVNATEGASSIAA-LTAAGAENL-AGKILVDIANPL 127 (245)
T ss_dssp -CEEEEHHHHHHHCSEEEECSCGGGHHHH-HHHHCHHHH-TTSEEEECCCCE
T ss_pred -eeccCHHHHHhcCCEEEEccCcHHHHHH-HHHhhhhhc-CCCEEEECCCCC
Confidence 2356788899999999999998765542 1233 2233 455999999744
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.11 Score=52.52 Aligned_cols=54 Identities=24% Similarity=0.435 Sum_probs=44.5
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC--CceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP--NIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
..++.|||.|. ||.++|..|.. . |..|++.++.
T Consensus 158 gk~vvVvG~s~iVG~p~A~lL~~---------------------------~g~~atVtv~h~~----------------- 193 (281)
T 2c2x_A 158 GAHVVVIGRGVTVGRPLGLLLTR---------------------------RSENATVTLCHTG----------------- 193 (281)
T ss_dssp TCEEEEECCCTTTHHHHHHHHTS---------------------------TTTCCEEEEECTT-----------------
T ss_pred CCEEEEECCCcHHHHHHHHHHhc---------------------------CCCCCEEEEEECc-----------------
Confidence 36899999996 69999999988 6 7889988532
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+.++.+.+++||+||.+++.|
T Consensus 194 ----------------t~~L~~~~~~ADIVI~Avg~p 214 (281)
T 2c2x_A 194 ----------------TRDLPALTRQADIVVAAVGVA 214 (281)
T ss_dssp ----------------CSCHHHHHTTCSEEEECSCCT
T ss_pred ----------------hhHHHHHHhhCCEEEECCCCC
Confidence 245677899999999999877
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.14 Score=52.92 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=64.7
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||..... ..+ .+.+ .++.++++.
T Consensus 144 l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-------------~~~~-~~l~ell~~ 198 (331)
T 1xdw_A 144 VRNCTVGVVGL----------GRIGRVAAQIFHGMGATVIGEDVFEIKG-IED-------------YCTQ-VSLDEVLEK 198 (331)
T ss_dssp GGGSEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCCS-CTT-------------TCEE-CCHHHHHHH
T ss_pred CCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCCccHH-HHh-------------cccc-CCHHHHHhh
Confidence 46899999998 3577889999999999999999976432 110 1122 378889999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|++++... +.++ ++ ....+.|++..+++|...
T Consensus 199 aDvV~~~~p~t~~t~~li~-~~~l~~mk~ga~lin~sr 235 (331)
T 1xdw_A 199 SDIITIHAPYIKENGAVVT-RDFLKKMKDGAILVNCAR 235 (331)
T ss_dssp CSEEEECCCCCTTTCCSBC-HHHHHTSCTTEEEEECSC
T ss_pred CCEEEEecCCchHHHHHhC-HHHHhhCCCCcEEEECCC
Confidence 99999987754 3333 33 334556777778888765
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.017 Score=59.09 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.7
Q ss_pred CCceEEEECC-ChhHHHHHHHHHH
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~ 26 (598)
++|+|.|.|+ |++|..++..|.+
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~ 46 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQ 46 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHH
T ss_pred CCCeEEEECCccHHHHHHHHHHHh
Confidence 4579999998 9999999999999
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.024 Score=58.03 Aligned_cols=37 Identities=30% Similarity=0.535 Sum_probs=30.7
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.||+|.|.| .|++|..++..|++ ++.|++|+++++++
T Consensus 3 ~m~~vlVTGatG~iG~~l~~~L~~-------------------------~~~g~~V~~~~r~~ 40 (348)
T 1oc2_A 3 QFKNIIVTGGAGFIGSNFVHYVYN-------------------------NHPDVHVTVLDKLT 40 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHH-------------------------HCTTCEEEEEECCC
T ss_pred cCcEEEEeCCccHHHHHHHHHHHH-------------------------hCCCCEEEEEeCCC
Confidence 357899999 59999999999998 11289999999864
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.43 Score=47.99 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=48.3
Q ss_pred CceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 93 VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 93 ~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.+++.++|..+|++++|++|+= ||+.. .-..+++.|.++++.|.||....|+||-..-.
T Consensus 127 aGVkVtsDD~EAvk~AEi~Ilf--tPfG~------------~t~~Iakkii~~lpEgAII~nTCTipp~~ly~ 185 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITW--LPKGN------------KQPDIIKKFADAIPEGAIVTHACTIPTTKFAK 185 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEEC--CTTCT------------THHHHHHHHGGGSCTTCEEEECSSSCHHHHHH
T ss_pred cCcEeecchHHHhcCCCEEEEe--cCCCC------------CcHHHHHHHHhhCcCCCEEecccCCCHHHHHH
Confidence 4788999999999999999988 45421 23567889999999999999999999866533
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.052 Score=57.00 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=30.7
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|.+...+|+|||+|..|+.+|..|++ .|++|+++|+++
T Consensus 1 M~~~~~dVvIIGgG~aGl~~A~~La~---------------------------~G~~V~v~E~~~ 38 (421)
T 3nix_A 1 MQREKVDVLVIGAGPAGTVAASLVNK---------------------------SGFKVKIVEKQK 38 (421)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEECSSC
T ss_pred CCCccCcEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEeCCC
Confidence 44444789999999999999999999 788888888763
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.23 Score=44.90 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=52.2
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
.++|+|+|++-+|+ +.+..+++.|.+.|++|...+|....+++ . +.....++.++.+..|
T Consensus 13 p~~IavIGas~~~g------~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------~---G~~~~~sl~el~~~~D 72 (145)
T 2duw_A 13 TRTIALVGASDKPD------RPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------L---GQQGYATLADVPEKVD 72 (145)
T ss_dssp CCCEEEESCCSCTT------SHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------T---TEECCSSTTTCSSCCS
T ss_pred CCEEEEECcCCCCC------ChHHHHHHHHHHCCCEEEEeCCccccccc-----------C---CeeccCCHHHcCCCCC
Confidence 57899999988775 68889999999999999999996521111 1 2344567777777899
Q ss_pred EEEEEeec
Q psy11160 474 AIVVCTEW 481 (598)
Q Consensus 474 alii~t~~ 481 (598)
++++++.-
T Consensus 73 lvii~vp~ 80 (145)
T 2duw_A 73 MVDVFRNS 80 (145)
T ss_dssp EEECCSCS
T ss_pred EEEEEeCH
Confidence 99999983
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.054 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=31.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
|||.|.|+ |++|..++..|++ .|++|++++++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~ 36 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVE---------------------------LGYEVVVVDNLSSG 36 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEECCCSSC
T ss_pred CEEEEECCCChHHHHHHHHHHh---------------------------CCCEEEEEeCCCCC
Confidence 58999998 9999999999999 89999999987654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.12 Score=53.89 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~ 26 (598)
+||+|+| .|++|..++..|..
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~ 30 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLAD 30 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT
T ss_pred ceEEEECcCCHHHHHHHHHHhc
Confidence 6999999 89999999998887
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.14 Score=52.97 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=64.6
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCCh-hhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEP-SQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
++++|+|+|+ .+.+-.++..|.+.|.+|.+||+.... .+.... . ++... ++.+++++
T Consensus 15 ~~~~I~IIG~----------G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~-------~----G~~~~-~~~e~~~~ 72 (338)
T 1np3_A 15 QGKKVAIIGY----------GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEA-------H----GLKVA-DVKTAVAA 72 (338)
T ss_dssp HTSCEEEECC----------SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH-------T----TCEEE-CHHHHHHT
T ss_pred cCCEEEEECc----------hHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHH-------C----CCEEc-cHHHHHhc
Confidence 5679999997 367788999999999999999986543 121111 1 22333 77888999
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i 508 (598)
+|+|++++......++=-..+...+++..+|+|..++
T Consensus 73 aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~~gv 109 (338)
T 1np3_A 73 ADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGF 109 (338)
T ss_dssp CSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEESCCH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 9999999987665332111444555555688888653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.28 Score=50.23 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=65.9
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCC--eEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhh-hc
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA--KLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYD-TV 469 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al 469 (598)
..++|+|+|+ ...+-.++..|.+.|. +|.+||+.....+.... .|.. .....++.+ ++
T Consensus 32 ~~~kI~IIG~----------G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~-------~G~~--~~~~~~~~~~~~ 92 (314)
T 3ggo_A 32 SMQNVLIVGV----------GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-------LGII--DEGTTSIAKVED 92 (314)
T ss_dssp SCSEEEEESC----------SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-------TTSC--SEEESCTTGGGG
T ss_pred CCCEEEEEee----------CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-------CCCc--chhcCCHHHHhh
Confidence 3479999997 3567789999999999 99999986432211111 1110 034567778 89
Q ss_pred cCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC
Q psy11160 470 KNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 470 ~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i 508 (598)
+++|+||+++.-....+. +..+...+.+..+|+|...+
T Consensus 93 ~~aDvVilavp~~~~~~v-l~~l~~~l~~~~iv~d~~Sv 130 (314)
T 3ggo_A 93 FSPDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSV 130 (314)
T ss_dssp GCCSEEEECSCGGGHHHH-HHHHHHHSCTTCEEEECCSC
T ss_pred ccCCEEEEeCCHHHHHHH-HHHHhhccCCCcEEEECCCC
Confidence 999999999987654432 34566656666799997665
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.67 Score=50.86 Aligned_cols=112 Identities=11% Similarity=0.040 Sum_probs=67.3
Q ss_pred CceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~e~ 81 (598)
.++|-|||.|-.|.+ +|..|.+ .|++|+++|... ...+.|.+...
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~---------------------------~G~~V~~sD~~~~~~~~~~L~~~gi----- 66 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARA---------------------------LGHTVTGSDANIYPPMSTQLEQAGV----- 66 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCCCTTHHHHHHHTTC-----
T ss_pred CCEEEEEEecHhhHHHHHHHHHh---------------------------CCCEEEEECCCCCcHHHHHHHHCCC-----
Confidence 478999999999997 6777787 899999999863 33444443111
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHH-------HHHHHHHc-CCCcEEE
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAA-------ARMIAEIA-TDNKIVV 153 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~-~~~~ivv 153 (598)
.+..-.+.+....++|+||++-.-|.+ .+.+...++. .+.+.+.+ +...+|.
T Consensus 67 ------------~~~~G~~~~~~~~~~d~vV~Spgi~~~--------~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIa 126 (524)
T 3hn7_A 67 ------------TIEEGYLIAHLQPAPDLVVVGNAMKRG--------MDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIA 126 (524)
T ss_dssp ------------EEEESCCGGGGCSCCSEEEECTTCCTT--------SHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEE
T ss_pred ------------EEECCCCHHHcCCCCCEEEECCCcCCC--------CHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEE
Confidence 122223333333579999988443431 2333222221 12234433 3457888
Q ss_pred EecCCchHHHHHHHH
Q psy11160 154 EKSTVPVRAAESIMN 168 (598)
Q Consensus 154 ~~STv~~~~~~~~~~ 168 (598)
+..|---.||-.+..
T Consensus 127 VTGTnGKTTTt~li~ 141 (524)
T 3hn7_A 127 VAGTHGKTTTTTMLA 141 (524)
T ss_dssp EECSSCHHHHHHHHH
T ss_pred EECCCCHHHHHHHHH
Confidence 888888877766544
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.064 Score=56.10 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCC-CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQT-ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~-~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
||.+ ..+|+|||.|..|+.+|..|++ .|++|+++|+++
T Consensus 1 ~M~~~~~dVvIVGaG~aGl~~A~~L~~---------------------------~G~~V~viE~~~ 39 (399)
T 2x3n_A 1 GMTDNHIDVLINGCGIGGAMLAYLLGR---------------------------QGHRVVVVEQAR 39 (399)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSC
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHh---------------------------CCCcEEEEeCCC
Confidence 4443 4689999999999999999999 778888888764
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.054 Score=58.42 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=29.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|++|+|||+|.-|++.|..|++ +|++|++++.+.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~---------------------------~G~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQA---------------------------AGIPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHH---------------------------TTCCEEEECCC-
T ss_pred CCCEEEECCcHHHHHHHHHHHH---------------------------CCCcEEEEccCC
Confidence 4689999999999999999999 788888888754
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.17 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.0
Q ss_pred CceEEEEC-CChhHHHHHHHHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~ 26 (598)
++||+||| .||+|.-+...|..
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~ 24 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEE 24 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHT
T ss_pred CcEEEEECCCChHHHHHHHHHhc
Confidence 47999999 69999999998887
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.19 Score=53.84 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=66.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+||.|||+|..|.+.|..|++ .|++|+++|.....- +..
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~---------------------------~G~~v~~~D~~~~~~-------------~~~ 44 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLA---------------------------RGVTPRVMDTRMTPP-------------GLD 44 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHT---------------------------TTCCCEEEESSSSCT-------------TGG
T ss_pred CCEEEEEeecHHHHHHHHHHHh---------------------------CCCEEEEEECCCCcc-------------hhH
Confidence 3689999999999999988888 899999999854210 000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~~ST 157 (598)
. +. ...++..-....+.+.++|+||++..-|.+ .+.+...++ -++.+.... +..+|-+..|
T Consensus 45 ~-l~--~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~--------~p~~~~a~~~~~~v~~~~~~~~~~~-~~~vI~VTGT 112 (439)
T 2x5o_A 45 K-LP--EAVERHTGSLNDEWLMAADLIVASPGIALA--------HPSLSAAADAGIEIVGDIELFCREA-QAPIVAITGS 112 (439)
T ss_dssp G-SC--TTSCEEESSCCHHHHHTCSEEEECTTSCTT--------CHHHHHHHHTTCEEECHHHHHHHHC-CSCEEEEECS
T ss_pred H-hh--CCCEEEECCCcHHHhccCCEEEeCCCCCCC--------CHHHHHHHHCCCcEEEHHHHHHHhc-CCCEEEEECC
Confidence 0 00 011222122224567789999988544321 122221110 011223333 4678888888
Q ss_pred CchHHHHHHHHHH
Q psy11160 158 VPVRAAESIMNVL 170 (598)
Q Consensus 158 v~~~~~~~~~~~l 170 (598)
---+||-.+...+
T Consensus 113 nGKTTT~~ml~~i 125 (439)
T 2x5o_A 113 NGKSTVTTLVGEM 125 (439)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8887776655433
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.18 Score=52.70 Aligned_cols=36 Identities=33% Similarity=0.387 Sum_probs=32.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.++|+|+|+|.||..+|..+.. .|.+|+++|+++++
T Consensus 175 GktV~I~G~GnVG~~~A~~l~~---------------------------~GakVvvsD~~~~~ 210 (355)
T 1c1d_A 175 GLTVLVQGLGAVGGSLASLAAE---------------------------AGAQLLVADTDTER 210 (355)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEEeCCccH
Confidence 3689999999999999999998 78999999999876
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.34 Score=47.26 Aligned_cols=69 Identities=14% Similarity=0.283 Sum_probs=46.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHH-cCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWN-SNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~-~~~~~~~e~~ 82 (598)
.++|.|||.|.||..-+..|.+ .|.+|++++.+.. .++.+. ++......
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~---------------------------~GA~VtVvap~~~~~l~~l~~~~~i~~i~-- 81 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQ---------------------------EGAAITVVAPTVSAEINEWEAKGQLRVKR-- 81 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGG---------------------------GCCCEEEECSSCCHHHHHHHHTTSCEEEC--
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEECCCCCHHHHHHHHcCCcEEEE--
Confidence 3689999999999999999999 7899999986532 244433 22111100
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
. ... .+.+.++|+||.++..
T Consensus 82 ----------~----~~~-~~dL~~adLVIaAT~d 101 (223)
T 3dfz_A 82 ----------K----KVG-EEDLLNVFFIVVATND 101 (223)
T ss_dssp ----------S----CCC-GGGSSSCSEEEECCCC
T ss_pred ----------C----CCC-HhHhCCCCEEEECCCC
Confidence 0 011 2357899999988543
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.077 Score=55.35 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=29.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
...|+|||.|.+|+++|..|++ .|++|+++|+..
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~---------------------------~G~~V~vlE~~~ 37 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAE---------------------------RGHRVLVLERHT 37 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeCCC
Confidence 4689999999999999999999 778888888753
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.074 Score=56.70 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
++|+|||.|..|+.+|..|++ .|++|+++|+.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~---------------------------~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQ---------------------------HDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHH---------------------------TTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHH---------------------------CCCeEEEEcCCC
Confidence 579999999999999999999 899999999864
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.095 Score=54.95 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=30.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|+|||+|..|+.+|..|++ .|++|+++|+++
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~---------------------------~G~~V~v~E~~~ 56 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQ---------------------------SGIDCDVYEAVK 56 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEeCCC
Confidence 3689999999999999999999 788888888764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=92.86 E-value=0.12 Score=54.11 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~ 26 (598)
++||+|+| .|++|..+...|.+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~ 31 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLG 31 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHc
Confidence 47999999 89999999999987
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.097 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.0
Q ss_pred CCceEEEECCChhHHHHHHHHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~ 26 (598)
+...|+|||.|..|++.|..|++
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~ 27 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLAR 27 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 34589999999999999999999
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.23 Score=50.87 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=67.4
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcC-CeEEEeCCCCC----hhhhhhhhhcccccccCCCceEecC-Chhh
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG-AKLKIYDPKVE----PSQIIQDLKELDPELLDHNAVSILD-DPYD 467 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G-~~V~~~DP~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 467 (598)
..+|+|+|+ ..-...++..|.+.| .+|.+||+... .++..+.+.. . +. .. ++.+
T Consensus 24 ~m~IgvIG~----------G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~-------~-g~--~~~s~~e 83 (317)
T 4ezb_A 24 MTTIAFIGF----------GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAE-------L-GV--EPLDDVA 83 (317)
T ss_dssp CCEEEEECC----------SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHH-------T-TC--EEESSGG
T ss_pred CCeEEEECc----------cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHH-------C-CC--CCCCHHH
Confidence 368999997 357789999999999 99999998541 0011111110 1 22 46 7889
Q ss_pred hccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 468 TVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 468 al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
+++++|+||+++.-+...+. ...+...+++..+|+|...+.
T Consensus 84 ~~~~aDvVi~avp~~~~~~~-~~~i~~~l~~~~ivv~~st~~ 124 (317)
T 4ezb_A 84 GIACADVVLSLVVGAATKAV-AASAAPHLSDEAVFIDLNSVG 124 (317)
T ss_dssp GGGGCSEEEECCCGGGHHHH-HHHHGGGCCTTCEEEECCSCC
T ss_pred HHhcCCEEEEecCCHHHHHH-HHHHHhhcCCCCEEEECCCCC
Confidence 99999999999988765442 356666666677999988764
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.14 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.+||+|||+|.||..++..|..
T Consensus 6 ~irvgIiG~G~VG~~~~~~l~~ 27 (331)
T 3c8m_A 6 TINLSIFGLGNVGLNLLRIIRS 27 (331)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH
T ss_pred EEeEEEEecCHHHHHHHHHHHh
Confidence 4689999999999999999877
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.066 Score=57.14 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
||....+|+|||.|..|+..|..|++ .|++|+++|+++.
T Consensus 23 M~~~~~dViIIGgG~AGl~aA~~La~---------------------------~G~~V~llEk~~~ 61 (417)
T 3v76_A 23 MVAEKQDVVIIGAGAAGMMCAIEAGK---------------------------RGRRVLVIDHARA 61 (417)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSSS
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHH---------------------------CCCcEEEEeCCCC
Confidence 44445689999999999999999999 8999999998764
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.76 E-value=1.7 Score=43.30 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=33.2
Q ss_pred eEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.+.|.| .|.+|..+|..|++ .|++|+++++++++.+.+.
T Consensus 30 ~~lVTGas~GIG~aia~~la~---------------------------~G~~V~~~~r~~~~~~~~~ 69 (283)
T 3v8b_A 30 VALITGAGSGIGRATALALAA---------------------------DGVTVGALGRTRTEVEEVA 69 (283)
T ss_dssp EEEEESCSSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHH
Confidence 455666 48999999999999 8999999999998877654
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.11 Score=47.87 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+|+|||.|..|..+|..|++ .|.+|+++++++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~---------------------------~g~~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLAR---------------------------AGLKVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHH---------------------------CCCcEEEEeCCC
Confidence 589999999999999999999 789999999875
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.71 E-value=4.7 Score=39.33 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=32.7
Q ss_pred eEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
++.|.| .|.+|..+|..|++ .|++|++.++++++.+.+.
T Consensus 12 ~vlVTGas~gIG~aia~~l~~---------------------------~G~~V~~~~r~~~~~~~~~ 51 (262)
T 3pk0_A 12 SVVVTGGTKGIGRGIATVFAR---------------------------AGANVAVAGRSTADIDACV 51 (262)
T ss_dssp EEEETTCSSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHH
Confidence 444555 58999999999999 8999999999998877654
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.37 Score=49.32 Aligned_cols=99 Identities=10% Similarity=0.186 Sum_probs=67.0
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcC----CeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG----AKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G----~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
..+|+|+|+ ...+..++..|.+.| .+|.+||+....+... .+.. . ++....++.+++
T Consensus 22 ~mkI~iIG~----------G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~-~l~~----~----G~~~~~~~~e~~ 82 (322)
T 2izz_A 22 SMSVGFIGA----------GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVS-ALRK----M----GVKLTPHNKETV 82 (322)
T ss_dssp CCCEEEESC----------SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHH-HHHH----H----TCEEESCHHHHH
T ss_pred CCEEEEECC----------CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHH-HHHH----c----CCEEeCChHHHh
Confidence 458999997 367888999999999 7999999865311111 1110 1 235667888899
Q ss_pred cCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChh
Q psy11160 470 KNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHD 512 (598)
Q Consensus 470 ~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~ 512 (598)
+++|+||+++......+. +..+...+.+..+|+|..+-++.+
T Consensus 83 ~~aDvVilav~~~~~~~v-l~~l~~~l~~~~ivvs~s~gi~~~ 124 (322)
T 2izz_A 83 QHSDVLFLAVKPHIIPFI-LDEIGADIEDRHIVVSCAAGVTIS 124 (322)
T ss_dssp HHCSEEEECSCGGGHHHH-HHHHGGGCCTTCEEEECCTTCCHH
T ss_pred ccCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEeCCCCCHH
Confidence 999999999985444332 234554454456899987765543
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.14 Score=54.16 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=22.2
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcc
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQV 33 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~ 33 (598)
++||+|+| .||+|.-+...|.. .|.+.+
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~-hp~~el 47 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSK-HPEFEI 47 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTT-CSSEEE
T ss_pred ccEEEEECCCChHHHHHHHHHHc-CCCceE
Confidence 36899999 59999999998887 344444
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.34 Score=51.93 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=70.3
Q ss_pred HHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCC
Q psy11160 385 YESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDD 464 (598)
Q Consensus 385 i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (598)
.+.....+.+++|+|+|+ ..-...+++.|...|++|.+|||.......... . ++. ..+
T Consensus 202 ~ratg~~L~GktVgIiG~----------G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~-------~----G~~-~~s 259 (436)
T 3h9u_A 202 KRATDVMIAGKTACVCGY----------GDVGKGCAAALRGFGARVVVTEVDPINALQAAM-------E----GYQ-VLL 259 (436)
T ss_dssp HHHHCCCCTTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-------T----TCE-ECC
T ss_pred HHhcCCcccCCEEEEEee----------CHHHHHHHHHHHHCCCEEEEECCChhhhHHHHH-------h----CCe-ecC
Confidence 333344578999999997 356788999999999999999995422111110 1 112 347
Q ss_pred hhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC---CChhhhhh
Q psy11160 465 PYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI---LNHDALLD 516 (598)
Q Consensus 465 ~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i---~d~~~~~~ 516 (598)
+.++++.+|++++.+....+ ++- ...+.|++..+|++.-+- +|.+.+..
T Consensus 260 L~eal~~ADVVilt~gt~~i--I~~-e~l~~MK~gAIVINvgRg~vEID~~~L~~ 311 (436)
T 3h9u_A 260 VEDVVEEAHIFVTTTGNDDI--ITS-EHFPRMRDDAIVCNIGHFDTEIQVAWLKA 311 (436)
T ss_dssp HHHHTTTCSEEEECSSCSCS--BCT-TTGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred HHHHHhhCCEEEECCCCcCc--cCH-HHHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence 89999999999987654433 222 224467777788887652 45555544
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.29 Score=51.54 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=59.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC----HHHH----HHHHcCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS----EERI----RQWNSNKL 76 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~----~~~~----~~~~~~~~ 76 (598)
.||.|+|+|.+|..+|..|.. .|. +|+++|++ .++. +.++
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~---------------------------~G~~~I~v~Dr~Gli~~~R~~~~L~~~k---- 241 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLD---------------------------LGVKNVVAVDRKGILNENDPETCLNEYH---- 241 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HTCCEEEEEETTEECCTTSGGGCSSHHH----
T ss_pred cEEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEECCCcccCCCcccccCHHH----
Confidence 589999999999999999998 566 89999997 5442 1111
Q ss_pred CCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 77 PIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 77 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+.+.+.... .....++.++++++|++|-+.. |. -. -+++.+.+.++.+|+..|
T Consensus 242 --------~~~A~~~~~-~~~~~~L~eav~~ADVlIG~Sa-p~-l~----------------t~emVk~Ma~~pIIfalS 294 (388)
T 1vl6_A 242 --------LEIARITNP-ERLSGDLETALEGADFFIGVSR-GN-IL----------------KPEWIKKMSRKPVIFALA 294 (388)
T ss_dssp --------HHHHHTSCT-TCCCSCHHHHHTTCSEEEECSC-SS-CS----------------CHHHHTTSCSSCEEEECC
T ss_pred --------HHHHHhhhc-cCchhhHHHHHccCCEEEEeCC-CC-cc----------------CHHHHHhcCCCCEEEEcC
Confidence 111111110 1124578899999999776653 42 11 123334456677877766
Q ss_pred C
Q psy11160 157 T 157 (598)
Q Consensus 157 T 157 (598)
-
T Consensus 295 N 295 (388)
T 1vl6_A 295 N 295 (388)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.29 Score=48.48 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=32.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~ 72 (598)
.+|.|||+|-+|.++|..|+. .|. +++++|.+.-....++
T Consensus 29 ~~VlvvG~GglG~~va~~La~---------------------------~Gvg~i~lvD~d~v~~sNL~ 69 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAG---------------------------AGVGTLVLADDDDVHLSNLQ 69 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHH---------------------------TTCSEEEEECCCBCCGGGTT
T ss_pred CcEEEEccCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCCcccccCC
Confidence 689999999999999999999 664 8899988753333333
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.46 E-value=0.22 Score=49.89 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=63.5
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
.+|+|+|+ ..-+..++..|.+.|.+|.+||+.....+ .+.. . ++....++.++++++|+
T Consensus 6 m~i~iiG~----------G~~G~~~a~~l~~~g~~V~~~~~~~~~~~---~~~~----~----g~~~~~~~~~~~~~~D~ 64 (299)
T 1vpd_A 6 MKVGFIGL----------GIMGKPMSKNLLKAGYSLVVSDRNPEAIA---DVIA----A----GAETASTAKAIAEQCDV 64 (299)
T ss_dssp CEEEEECC----------STTHHHHHHHHHHTTCEEEEECSCHHHHH---HHHH----T----TCEECSSHHHHHHHCSE
T ss_pred ceEEEECc----------hHHHHHHHHHHHhCCCEEEEEeCCHHHHH---HHHH----C----CCeecCCHHHHHhCCCE
Confidence 48999996 35678899999999999999998532211 1110 1 23566788888999999
Q ss_pred EEEEeeccc-hhhccH--HHHHhccCCCcEEEecCCCC
Q psy11160 475 IVVCTEWDE-FVTLDY--KRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 475 lii~t~~~~-f~~ld~--~~l~~~m~~~~iI~D~r~i~ 509 (598)
|++++..+. .+..-. +.+...+.+..+|+|..+..
T Consensus 65 vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~ 102 (299)
T 1vpd_A 65 IITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIA 102 (299)
T ss_dssp EEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred EEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCC
Confidence 999998654 222110 22334455556899988775
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.24 Score=51.30 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=24.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHh-CCCCcceecc
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALK-CPNIQVTVVD 37 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~-~~~~~~~~~~ 37 (598)
++||+|+| .|++|..+...|... +|++++..++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 57999999 999999999988872 1444443333
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.042 Score=58.92 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
||.+..+|+|||+|..|+.+|..|++ .|++|+++|+++.
T Consensus 2 mm~~~~dVvIVGaG~aGl~aA~~La~---------------------------~G~~V~vlE~~~~ 40 (453)
T 3atr_A 2 MKELKYDVLIIGGGFAGSSAAYQLSR---------------------------RGLKILLVDSKPW 40 (453)
T ss_dssp CEEEECSEEEECCSHHHHHHHHHHSS---------------------------SSCCEEEECSSCG
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHH---------------------------CCCCEEEEECCCC
Confidence 55545689999999999999999998 7888888887643
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.31 Score=53.00 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=69.7
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChh-hhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPS-QIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.++|+|+|+ .+....++..|.+.|.+|.+||...... .+.+. ..+ .++....++.++++
T Consensus 13 ~~~~~IgvIGl----------G~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~-------~~~-~gi~~~~s~~e~v~ 74 (480)
T 2zyd_A 13 MSKQQIGVVGM----------AVMGRNLALNIESRGYTVSIFNRSREKTEEVIAE-------NPG-KKLVPYYTVKEFVE 74 (480)
T ss_dssp --CBSEEEECC----------SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHH-------STT-SCEEECSSHHHHHH
T ss_pred cCCCeEEEEcc----------HHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhh-------CCC-CCeEEeCCHHHHHh
Confidence 35789999998 4678899999999999999999753321 11111 111 14566788888888
Q ss_pred C---CCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCCCCC
Q psy11160 471 N---THAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 471 ~---adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+ +|+||+++... ..++ -++.+...+.+..+|+|+.+...
T Consensus 75 ~l~~aDvVil~Vp~~~~v~~-vl~~l~~~l~~g~iIId~s~g~~ 117 (480)
T 2zyd_A 75 SLETPRRILLMVKAGAGTDA-AIDSLKPYLDKGDIIIDGGNTFF 117 (480)
T ss_dssp TBCSSCEEEECSCSSSHHHH-HHHHHGGGCCTTCEEEECSCCCH
T ss_pred CCCCCCEEEEECCCHHHHHH-HHHHHHhhcCCCCEEEECCCCCH
Confidence 7 99999999885 3443 22456666655569999999863
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.015 Score=57.43 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=46.5
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+++|.|.|+ |++|..++..|++ .|++|+++++++.+. +. .+.
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~--~~--------~~~ 44 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGT---------------------------LAHEVRLSDIVDLGA--AE--------AHE 44 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGG---------------------------TEEEEEECCSSCCCC--CC--------TTE
T ss_pred CceEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEEeCCCccc--cC--------CCc
Confidence 358999998 9999999999999 789999999976421 00 010
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
......+.-..+..++++++|+||-+...
T Consensus 45 -----~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 73 (267)
T 3ay3_A 45 -----EIVACDLADAQAVHDLVKDCDGIIHLGGV 73 (267)
T ss_dssp -----EECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred -----cEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence 00001111112345567889999988754
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.074 Score=54.65 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=29.2
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
-|+|||+|..|+.+|..|++ .|++|+++|+.+
T Consensus 6 DViIVGaGpaGl~~A~~La~---------------------------~G~~V~v~Er~~ 37 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAK---------------------------YGLKTLMIEKRP 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------CCCcEEEEeCCC
Confidence 49999999999999999999 899999999754
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.17 Score=55.90 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=61.2
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCCh-hhhccCCC
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDP-YDTVKNTH 473 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~al~~ad 473 (598)
.+|.|+|+ +--+..+++.|.+.|.+|.+-|...... . .+.. --.|+. +-...+ ..-++.||
T Consensus 349 ~~viIiG~----------G~~G~~la~~L~~~g~~v~vid~d~~~~--~-~~~~--~i~gD~---t~~~~L~~agi~~ad 410 (565)
T 4gx0_A 349 ELIFIIGH----------GRIGCAAAAFLDRKPVPFILIDRQESPV--C-NDHV--VVYGDA---TVGQTLRQAGIDRAS 410 (565)
T ss_dssp CCEEEECC----------SHHHHHHHHHHHHTTCCEEEEESSCCSS--C-CSSC--EEESCS---SSSTHHHHHTTTSCS
T ss_pred CCEEEECC----------CHHHHHHHHHHHHCCCCEEEEECChHHH--h-hcCC--EEEeCC---CCHHHHHhcCccccC
Confidence 78999997 3457889999999999999987643211 1 0100 001211 000011 12345799
Q ss_pred EEEEEeeccchhhccHHHHHhccCCC-cEEEecCCCCChhhhhhccce
Q psy11160 474 AIVVCTEWDEFVTLDYKRIYEGMMKP-AYIFDGRKILNHDALLDIGFN 520 (598)
Q Consensus 474 alii~t~~~~f~~ld~~~l~~~m~~~-~iI~D~r~i~d~~~~~~~G~~ 520 (598)
++|++|+.++ .++-...+...+..+ .+|.=.++--..+.++..|..
T Consensus 411 ~vi~~~~~d~-~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~~~G~d 457 (565)
T 4gx0_A 411 GIIVTTNDDS-TNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGAD 457 (565)
T ss_dssp EEEECCSCHH-HHHHHHHHHHHHCSSSEEEEEESSTTSHHHHHHHTCS
T ss_pred EEEEECCCch-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 9999999875 222223333333333 566656655556666666663
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.35 Score=52.86 Aligned_cols=100 Identities=9% Similarity=0.037 Sum_probs=69.3
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC--
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN-- 471 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-- 471 (598)
..+|+|+|+ .+....|+..|.+.|++|.+||......+....- . ..+ .++..+.++.+++++
T Consensus 10 ~~~IgvIGl----------G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~--~---~~~-~gi~~~~s~~e~v~~l~ 73 (497)
T 2p4q_A 10 SADFGLIGL----------AVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN--E---AKG-KSIIGATSIEDFISKLK 73 (497)
T ss_dssp CCSEEEECC----------SHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT--T---TTT-SSEECCSSHHHHHHTSC
T ss_pred CCCEEEEee----------HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc--c---ccC-CCeEEeCCHHHHHhcCC
Confidence 568999998 3678899999999999999999864322111100 0 000 145667888888877
Q ss_pred -CCEEEEEeecc-chhhccHHHHHhccCCCcEEEecCCCCC
Q psy11160 472 -THAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 472 -adalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+|+||+++..+ ..++ -++.+...+.+..+|+|+.+...
T Consensus 74 ~aDvVil~Vp~~~~v~~-vl~~l~~~l~~g~iIId~s~~~~ 113 (497)
T 2p4q_A 74 RPRKVMLLVKAGAPVDA-LINQIVPLLEKGDIIIDGGNSHF 113 (497)
T ss_dssp SSCEEEECCCSSHHHHH-HHHHHGGGCCTTCEEEECSCCCH
T ss_pred CCCEEEEEcCChHHHHH-HHHHHHHhCCCCCEEEECCCCCh
Confidence 99999999985 3333 22456666655569999998864
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.35 E-value=2.8 Score=41.33 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=34.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+++.|.|+ |.+|..+|..|++ .|++|++.++++++.+.+.
T Consensus 5 k~~lVTGas~GIG~aia~~la~---------------------------~G~~V~~~~r~~~~~~~~~ 45 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELGV---------------------------AGAKILLGARRQARIEAIA 45 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 45666665 7999999999999 8999999999998877654
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.24 Score=51.38 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.6
Q ss_pred CceEEEEC-CChhHHHHHHHHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~ 26 (598)
+|||+|+| .|++|..+...|.+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~ 28 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDE 28 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHh
Confidence 47999999 79999999998875
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.29 Score=51.76 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=31.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
+++|.|.|+ |++|..++..|+. .|++|++++++++
T Consensus 69 ~~~vlVTGatG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~ 104 (427)
T 4f6c_A 69 LGNTLLTGATGFLGAYLIEALQG---------------------------YSHRIYCFIRADN 104 (427)
T ss_dssp CEEEEEECTTSHHHHHHHHHHTT---------------------------TEEEEEEEEECSS
T ss_pred CCEEEEecCCcHHHHHHHHHHHc---------------------------CCCEEEEEECCCC
Confidence 468999996 9999999999987 8999999999877
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.17 Score=51.40 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
...+|+|+|+ ......+++.|.+.|++|.+||+.....+. +.. . +.....++.++++++
T Consensus 8 ~~~~IgiIG~----------G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~---~~~----~----g~~~~~~~~e~~~~a 66 (306)
T 3l6d_A 8 FEFDVSVIGL----------GAMGTIMAQVLLKQGKRVAIWNRSPGKAAA---LVA----A----GAHLCESVKAALSAS 66 (306)
T ss_dssp CSCSEEEECC----------SHHHHHHHHHHHHTTCCEEEECSSHHHHHH---HHH----H----TCEECSSHHHHHHHS
T ss_pred CCCeEEEECC----------CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHH----C----CCeecCCHHHHHhcC
Confidence 4578999997 357788999999999999999985432111 110 1 235678899999999
Q ss_pred CEEEEEeeccc-hhhc-cHHHHHhccCCCcEEEecCCCC
Q psy11160 473 HAIVVCTEWDE-FVTL-DYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 473 dalii~t~~~~-f~~l-d~~~l~~~m~~~~iI~D~r~i~ 509 (598)
|+||+++..+. .++. ..+.+.. +.+..+|+|...+.
T Consensus 67 DvVi~~vp~~~~~~~v~~~~~l~~-~~~g~ivid~st~~ 104 (306)
T 3l6d_A 67 PATIFVLLDNHATHEVLGMPGVAR-ALAHRTIVDYTTNA 104 (306)
T ss_dssp SEEEECCSSHHHHHHHHTSTTHHH-HTTTCEEEECCCCC
T ss_pred CEEEEEeCCHHHHHHHhcccchhh-ccCCCEEEECCCCC
Confidence 99999998664 3321 1002322 34556899998764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=92.31 E-value=3.9 Score=39.88 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=33.9
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
++|.|.| .|.+|..+|..|++ .|++|+++++++++.+.+.
T Consensus 30 k~vlITGas~gIG~~la~~l~~---------------------------~G~~V~~~~r~~~~~~~~~ 70 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGS---------------------------LGARVVLTARDVEKLRAVE 70 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 4566666 59999999999999 8999999999998877654
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.1 Score=55.18 Aligned_cols=95 Identities=11% Similarity=0.170 Sum_probs=65.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-+-.+++.|...|.+|.+|||..... . .+ .. ..++.++++
T Consensus 113 ~l~g~tvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~---~--------~g----~~-~~~l~ell~ 166 (380)
T 2o4c_A 113 DLAERTYGVVGA----------GQVGGRLVEVLRGLGWKVLVCDPPRQAR---E--------PD----GE-FVSLERLLA 166 (380)
T ss_dssp CGGGCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECHHHHHH---S--------TT----SC-CCCHHHHHH
T ss_pred ccCCCEEEEEeC----------CHHHHHHHHHHHHCCCEEEEEcCChhhh---c--------cC----cc-cCCHHHHHH
Confidence 357899999997 3577889999999999999999853211 0 11 11 357888999
Q ss_pred CCCEEEEEeeccc-----hhh-ccHHHHHhccCCCcEEEecCC--CCChh
Q psy11160 471 NTHAIVVCTEWDE-----FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHD 512 (598)
Q Consensus 471 ~adalii~t~~~~-----f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~ 512 (598)
.+|+|++++.... -++ ++ ....+.|++..+++|..+ +.|.+
T Consensus 167 ~aDvV~l~~Plt~~g~~~T~~li~-~~~l~~mk~gailIN~sRG~vvd~~ 215 (380)
T 2o4c_A 167 EADVISLHTPLNRDGEHPTRHLLD-EPRLAALRPGTWLVNASRGAVVDNQ 215 (380)
T ss_dssp HCSEEEECCCCCSSSSSCCTTSBC-HHHHHTSCTTEEEEECSCGGGBCHH
T ss_pred hCCEEEEeccCccccccchhhhcC-HHHHhhCCCCcEEEECCCCcccCHH
Confidence 9999999876543 222 34 344556777678888765 34543
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.074 Score=56.24 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=53.7
Q ss_pred ceEEEECCChhHHHH-HHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPT-CSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~ 83 (598)
||+..+|+|.+|... +..|.+ .|++|+..|+++..++.+|+ |...+...|.
T Consensus 1 mkavhfGaGniGRGfig~~l~~---------------------------~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~ 53 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLAD---------------------------AGIQLTFADVNQVVLDALNARHSYQVHVVGE 53 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHHSEEEEEEESS
T ss_pred CcEEEECCCccchhhHHHHHHH---------------------------cCCeEEEEeCCHHHHHHHhcCCCEEEEEccC
Confidence 689999999999555 555666 89999999999999999995 4333332232
Q ss_pred HHHHhhhcCCceEEe-c---CHHHHhccCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFS-T---DIKSAIQKAQLIFISVN 116 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~-~---~~~~~~~~adviii~v~ 116 (598)
++.... + .++++. + +.-+.+.++|+|..+++
T Consensus 54 ~~~~~~-v-~~v~ai~s~~~~~~~~i~~adlitT~vG 88 (382)
T 3h2z_A 54 TEQVDT-V-SGVNAVSSIGDDVVDLIAQVDLVTTAVG 88 (382)
T ss_dssp SEEEEE-E-ESCEEEETTSSHHHHHHTTCSEEEECCC
T ss_pred CcceEE-E-EEEEEEeCcHHHHHHHHcCCCEEEECCC
Confidence 211111 1 123331 1 23446789999888874
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.38 Score=47.43 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=68.6
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCe-EEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAK-LKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~-V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
.+.+|+|+|.. .-+..++..|.+.|.+ |.+||+.... ... +.. .. ++....++.+++++
T Consensus 9 ~~m~i~iiG~G----------~mG~~~a~~l~~~g~~~v~~~~~~~~~--~~~-~~~----~~---g~~~~~~~~~~~~~ 68 (266)
T 3d1l_A 9 EDTPIVLIGAG----------NLATNLAKALYRKGFRIVQVYSRTEES--ARE-LAQ----KV---EAEYTTDLAEVNPY 68 (266)
T ss_dssp GGCCEEEECCS----------HHHHHHHHHHHHHTCCEEEEECSSHHH--HHH-HHH----HT---TCEEESCGGGSCSC
T ss_pred CCCeEEEEcCC----------HHHHHHHHHHHHCCCeEEEEEeCCHHH--HHH-HHH----Hc---CCceeCCHHHHhcC
Confidence 34689999963 4667889999999999 8999985322 111 100 00 23456788888899
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhh
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALL 515 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~ 515 (598)
+|++|+++......++ +..+...+.+..+|+|..+.+..+.+.
T Consensus 69 ~Dvvi~av~~~~~~~v-~~~l~~~~~~~~ivv~~s~~~~~~~l~ 111 (266)
T 3d1l_A 69 AKLYIVSLKDSAFAEL-LQGIVEGKREEALMVHTAGSIPMNVWE 111 (266)
T ss_dssp CSEEEECCCHHHHHHH-HHHHHTTCCTTCEEEECCTTSCGGGST
T ss_pred CCEEEEecCHHHHHHH-HHHHHhhcCCCcEEEECCCCCchHHHH
Confidence 9999999988754332 234554454566999998877655443
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.12 Score=54.43 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=29.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
|+|+|||.|..|++.|..|++ .|++|++++.+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~---------------------------~G~~V~vlE~~ 32 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLAR---------------------------NGHEIIVLEKS 32 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHH---------------------------TTCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeCC
Confidence 589999999999999999999 78888888875
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.11 Score=56.73 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|.+...+|.|||.|..|+.+|..|++ .|++|+++|+++
T Consensus 1 M~~~~~dVlIVGaG~aGl~~A~~La~---------------------------~G~~v~viEr~~ 38 (535)
T 3ihg_A 1 MNDHEVDVLVVGAGLGGLSTAMFLAR---------------------------QGVRVLVVERRP 38 (535)
T ss_dssp CCCCSEEEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEECSSS
T ss_pred CCCccCcEEEECcCHHHHHHHHHHHH---------------------------CCCCEEEEeCCC
Confidence 55556789999999999999999999 788888888764
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.092 Score=52.90 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+.++|+|||.|..|+..|..|++ .|++|+++|+.+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~---------------------------~g~~v~vie~~~ 55 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLAR---------------------------AEIKPILYEGMM 55 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH---------------------------TTCCCEEECCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH---------------------------CCCCEEEEecCC
Confidence 35689999999999999999999 899999999854
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.038 Score=53.60 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=31.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
++|.|.|+ |.+|..++..|++ .|++|+++++++++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~ 37 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLAR---------------------------AGHTVIGIDRGQAD 37 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSSSS
T ss_pred cEEEEeCCCcHHHHHHHHHHHh---------------------------CCCEEEEEeCChhH
Confidence 47889987 9999999999999 89999999998654
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.13 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=20.6
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~ 26 (598)
||+ ..+|+|||.|..|+.+|..|++
T Consensus 1 M~~-~~dVvIVGaG~aGl~~A~~L~~ 25 (410)
T 3c96_A 1 MSE-PIDILIAGAGIGGLSCALALHQ 25 (410)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHH
T ss_pred CCC-CCeEEEECCCHHHHHHHHHHHh
Confidence 554 3689999999999999999999
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.15 Score=53.42 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=30.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+|+|||+|..|+.+|..|++ .|++|+++|+++
T Consensus 27 ~dV~IVGaG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~ 59 (398)
T 2xdo_A 27 KNVAIIGGGPVGLTMAKLLQQ---------------------------NGIDVSVYERDN 59 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEeCCC
Confidence 589999999999999999999 788999998864
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.13 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.5
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
..+|+|||.|..|+++|..|++
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~ 24 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAK 24 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 3589999999999999999999
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.33 Score=48.68 Aligned_cols=95 Identities=12% Similarity=0.116 Sum_probs=63.9
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
..+|+|+|+ ..-+..++..|.+.|.+|.+||+.... .. .+. ..++....++.++++++|
T Consensus 4 ~~~i~iiG~----------G~~G~~~a~~l~~~g~~V~~~~~~~~~--~~-~~~--------~~g~~~~~~~~~~~~~~D 62 (301)
T 3cky_A 4 SIKIGFIGL----------GAMGKPMAINLLKEGVTVYAFDLMEAN--VA-AVV--------AQGAQACENNQKVAAASD 62 (301)
T ss_dssp CCEEEEECC----------CTTHHHHHHHHHHTTCEEEEECSSHHH--HH-HHH--------TTTCEECSSHHHHHHHCS
T ss_pred CCEEEEECc----------cHHHHHHHHHHHHCCCeEEEEeCCHHH--HH-HHH--------HCCCeecCCHHHHHhCCC
Confidence 358999997 356788999999999999999985321 11 111 013456678888899999
Q ss_pred EEEEEeeccc-hhhccH--HHHHhccCCCcEEEecCCCC
Q psy11160 474 AIVVCTEWDE-FVTLDY--KRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 474 alii~t~~~~-f~~ld~--~~l~~~m~~~~iI~D~r~i~ 509 (598)
+|++++..+. .+..-. +.+...+.+..+|+|..+..
T Consensus 63 ~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 63 IIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp EEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred EEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 9999996544 222111 13334455556899988776
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.34 Score=49.52 Aligned_cols=92 Identities=17% Similarity=0.112 Sum_probs=60.1
Q ss_pred ceEEEE-CC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCI-GA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~vi-G~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+|+|| |+ |.+|...+..|.+ .|++ .++++|+.+. +. .+
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~---------------------------~G~~-~v~~VnP~~~-----g~-~i----- 54 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALE---------------------------YGTN-LVGGTTPGKG-----GK-TH----- 54 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHH---------------------------HTCE-EEEEECTTCT-----TC-EE-----
T ss_pred CcEEEEECCCCCHHHHHHHHHHH---------------------------CCCc-EEEEeCCCcC-----cc-eE-----
Confidence 467888 99 9999999999988 6888 5567666431 10 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.++....+++++.+ .+|++++++|.+ .+.+++++..+.- -..+|+..+-++..
T Consensus 55 ---------~G~~vy~sl~el~~~~~vD~avI~vP~~---------------~~~~~~~e~i~~G-i~~iv~~t~G~~~~ 109 (305)
T 2fp4_A 55 ---------LGLPVFNTVKEAKEQTGATASVIYVPPP---------------FAAAAINEAIDAE-VPLVVCITEGIPQQ 109 (305)
T ss_dssp ---------TTEEEESSHHHHHHHHCCCEEEECCCHH---------------HHHHHHHHHHHTT-CSEEEECCCCCCHH
T ss_pred ---------CCeeeechHHHhhhcCCCCEEEEecCHH---------------HHHHHHHHHHHCC-CCEEEEECCCCChH
Confidence 24667778888877 899999998654 3455555555432 23445554444443
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.099 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=20.1
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
|.|+|||.|.+|+++|..|++
T Consensus 1 mdVvIIGgGi~Gls~A~~La~ 21 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHE 21 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHH
Confidence 589999999999999999999
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=91.87 E-value=0.52 Score=51.33 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=74.9
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc---
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK--- 470 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--- 470 (598)
..+|+|+|+. .....++..|.+.|++|.+||+.....+..... . ..+. .+....++.++++
T Consensus 4 ~~kIgiIGlG----------~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---g--~~g~-~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 4 QADIALIGLA----------VMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN---E--AKGT-KVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CBSEEEECCS----------HHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT---T--TTTS-SCEECSSHHHHHHTBC
T ss_pred CCEEEEEChh----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc---c--cCCC-ceeccCCHHHHHhhcc
Confidence 4689999983 678899999999999999999865322111100 0 0011 2344678888776
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh------hhhhhccceeee
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNVHT 523 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y~~ 523 (598)
++|+|++++.....-+--++.+...+.+..+|+|+.+.... +.+.+.|+.|..
T Consensus 68 ~aDvVil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd 126 (484)
T 4gwg_A 68 KPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVG 126 (484)
T ss_dssp SSCEEEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhcccccc
Confidence 59999999998642221235667777777799999998732 233445665533
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=1.3 Score=45.35 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=35.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
..+|.|+|+|.+|+..+..+.. . .|.+|+++|+++++.+.+++
T Consensus 172 g~~vlv~GaG~vG~~a~qla~~-------------------------~-g~~~Vi~~~~~~~~~~~~~~ 214 (345)
T 3jv7_A 172 GSTAVVIGVGGLGHVGIQILRA-------------------------V-SAARVIAVDLDDDRLALARE 214 (345)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH-------------------------H-CCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHH-------------------------c-CCCEEEEEcCCHHHHHHHHH
Confidence 4689999999999887665555 1 27899999999999998775
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.76 E-value=0.43 Score=47.40 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=63.3
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCC--eEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc-C
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA--KLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK-N 471 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-~ 471 (598)
++|+|+|+ ..-+..++..|.+.|. +|.+||+.....+.... .|-. .....++.++++ +
T Consensus 2 ~~I~iIG~----------G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-------~g~~--~~~~~~~~~~~~~~ 62 (281)
T 2g5c_A 2 QNVLIVGV----------GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-------LGII--DEGTTSIAKVEDFS 62 (281)
T ss_dssp CEEEEESC----------SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-------TTSC--SEEESCGGGGGGTC
T ss_pred cEEEEEec----------CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-------CCCc--ccccCCHHHHhcCC
Confidence 47999997 3567889999999998 99999986432211111 1111 023457778889 9
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
+|+|++++......++ +..+...+.+..+|+|..+..
T Consensus 63 aDvVilavp~~~~~~v-~~~l~~~l~~~~iv~~~~~~~ 99 (281)
T 2g5c_A 63 PDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVK 99 (281)
T ss_dssp CSEEEECSCHHHHHHH-HHHHHHHSCTTCEEEECCSCC
T ss_pred CCEEEEcCCHHHHHHH-HHHHHhhCCCCcEEEECCCCc
Confidence 9999999987765432 234555565566888877653
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.71 E-value=4.9 Score=38.66 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=34.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+++.|.|+ |.+|..+|..|++ .|++|+++++++++.+.+.
T Consensus 10 k~vlITGas~giG~~~a~~l~~---------------------------~G~~V~~~~r~~~~~~~~~ 50 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAR---------------------------EGAAVVVADINAEAAEAVA 50 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHH
Confidence 45667776 8999999999999 8999999999998887655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 598 | ||||
| d1mv8a3 | 136 | c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, | 2e-22 | |
| d1mv8a3 | 136 | c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, | 2e-09 | |
| d1dlja1 | 98 | a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (U | 2e-13 | |
| d1dlja3 | 108 | c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UD | 3e-08 | |
| d1dlja3 | 108 | c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UD | 4e-07 | |
| d1mv8a1 | 98 | a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, | 6e-08 | |
| d1mv8a2 | 202 | c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse | 7e-08 | |
| d1dlja2 | 196 | c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD | 7e-06 | |
| d1dlja2 | 196 | c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD | 1e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 3e-05 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 3e-04 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 1e-04 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 0.003 |
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 91.4 bits (226), Expect = 2e-22
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 382 QQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQ 441
Q+ ++ L + + + +LG +FK T D RESP + + L+ +G +L+I+D VE ++
Sbjct: 2 QKAFD-LITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYAR 60
Query: 442 IIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501
+ KE + H + ++ D + V ++ +V+ + FV L K
Sbjct: 61 VHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNK-----TPSGKK 115
Query: 502 IFDGRKILNHDAL 514
+ D + H
Sbjct: 116 LVDLVGFMPHTTT 128
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 54.4 bits (130), Expect = 2e-09
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 538 KIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594
+ L + + + +LG +FK T D RESP + + L+ +G +L+I+D +
Sbjct: 2 QKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEY 58
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 64.3 bits (156), Expect = 2e-13
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFG 354
+E KL AN +LA R++ N L E+ + + + + D RIG + S G+G
Sbjct: 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYG 61
Query: 355 GSCFQKDILNLVYICECLNLP 375
G KD L+ +
Sbjct: 62 GYSLPKDTKQLLANYNNIPQT 82
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 49.5 bits (118), Expect = 3e-08
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELL 454
K + + K N+ + RES V L + K+ IY+P + +
Sbjct: 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSV------- 68
Query: 455 DHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYK 490
+++D + K + IV +E + K
Sbjct: 69 ------LVNDLENFKKQANIIVTNRYDNELQDVKNK 98
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 46.4 bits (110), Expect = 4e-07
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 536 SEKIISSLFNTVSD-KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594
+++II+ L S K + + K N+ + RES V L + K+ IY+P L
Sbjct: 1 AKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNK 60
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.6 bits (115), Expect = 6e-08
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 296 SSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGA--KFLQASVGF 353
+E+ K N + A +++ N + + +A G D EV + D ++ +++ F
Sbjct: 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAF 62
Query: 354 GGSCFQKDILNLVYICECLNLP 375
GGSC KD+ L Y L++
Sbjct: 63 GGSCLPKDVRALTYRASQLDVE 84
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 50.8 bits (120), Expect = 7e-08
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 28/112 (25%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I G GYVG ++ + +V VD S +
Sbjct: 3 ISIFGLGYVGAVCAGCLSARG---------------------------HEVIGVDVSSTK 35
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDV-NLFFSTDIKSAIQKAQLIFISVNTP 118
I N K PI EPGL+ ++++ R L +TD K A+ + + FI V TP
Sbjct: 36 IDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTP 87
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 31/167 (18%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I G+GYVG +++L+ +VT+VD +
Sbjct: 3 IAVAGSGYVGLSLGVLLSLQN----------------------------EVTIVDILPSK 34
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
+ + N+ PI + ++ K++ +++ + D K+A ++A+L+ I T T N +
Sbjct: 35 VDKINNGLSPIQDEYIEY-YLKSKQLSIKATLDSKAAYKEAELVII----ATPTNYNSRI 89
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANH 174
D ++VE + + + + ++ KST+P+ + + +
Sbjct: 90 NYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQTDR 135
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESI 221
AA ++ TN + D ++VE + + + + ++ KST+P+ +
Sbjct: 69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEM 127
Query: 222 MNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEE--TPEGYAAIESLSWV 279
+ + +PEFL E A+ D RI++ EE +P+ A E + +
Sbjct: 128 RQKFQTDRIIF-------SPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALL 180
Query: 280 YEHWIPRKHI 289
+ + ++
Sbjct: 181 LKSAAKKNNV 190
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 43.0 bits (100), Expect = 3e-05
Identities = 30/225 (13%), Positives = 61/225 (27%), Gaps = 58/225 (25%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+G G G + +ALK V D +R
Sbjct: 4 YAVLGLGNGGHAFAAYLALK---------------------------GQSVLAWDIDAQR 36
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I++ I + ++DI A++ A +I I V
Sbjct: 37 IKEIQDRGAII----AEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAI--------- 83
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+ + A IA ++ ++++ A E +L+ N V +
Sbjct: 84 ------HHASIAANIASYISEGQLIILNPGATGGALE-FRKILRENGAPEVTI----GET 132
Query: 188 KYVEAAARM-----IAEIATDNKIVVEKSTVPVRAAESIMNVLKA 227
+ R + A + + +P A + + +
Sbjct: 133 SSMLFTCRSERPGQVTVNAIKGAMDF--ACLPAAKAGWALEQIGS 175
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 10/99 (10%), Positives = 28/99 (28%), Gaps = 2/99 (2%)
Query: 189 YVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF--LSE 246
+ + A IA ++ ++++ A E + + + S
Sbjct: 84 HHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSER 143
Query: 247 GTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP 285
+T + + A+E + V ++
Sbjct: 144 PGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYVA 182
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 41.9 bits (98), Expect = 1e-04
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 35/144 (24%)
Query: 55 NIQVTVVDKSEER-IRQWNSNKLPIYEPGLDEVVKK-----------------TRDVNLF 96
V + + + + S P + EVVK DV L
Sbjct: 71 PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLK 130
Query: 97 FSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156
++D + A++ A ++ + + A+ + IV
Sbjct: 131 VTSDDREAVEGADIVITWLPKG--------------NKQPDIIKKFADAIPEGAIVTHAC 176
Query: 157 TVPVRAAESIMNVLKANHKTNVQF 180
T+P I L + ++
Sbjct: 177 TIPTTKFAKIFKDLG---REDLNI 197
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 37.3 bits (85), Expect = 0.003
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIA 50
M+ + + +G+G +G S + L V ++ + + A
Sbjct: 2 MMHSQKRVVVLGSGVIG--LSSALILARKGYSVHILARDLPEDVSSQTFA 49
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 598 | |||
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 100.0 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.94 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 99.84 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.83 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 99.78 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.77 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 99.72 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 99.69 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.67 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.62 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.59 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.55 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.48 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.48 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 99.47 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 99.42 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.38 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.33 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.29 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.21 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.17 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.15 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.11 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.02 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.01 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.87 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.85 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.84 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.83 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.73 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.59 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.59 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.58 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.54 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.54 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.54 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.52 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.51 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.51 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.45 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.44 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.39 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.33 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.33 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.3 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.26 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.21 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.1 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.08 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.03 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.02 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.99 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.97 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.91 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.89 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.89 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.87 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.82 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.79 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.77 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.64 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.59 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.58 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.54 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.46 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.45 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.44 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.44 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.44 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.41 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.4 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.38 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.3 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.26 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.25 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.24 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.23 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.21 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.21 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.09 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.08 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.04 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 96.76 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.76 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 96.54 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.53 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.51 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.47 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 96.44 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.36 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.28 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.26 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.21 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 96.21 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.19 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 96.16 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.11 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 95.99 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.9 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.9 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 95.87 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.86 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.82 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.78 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 95.75 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.7 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.69 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 95.69 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.69 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.66 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.65 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.63 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 95.61 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.58 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.5 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.49 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.38 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.33 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.22 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 95.22 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.21 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.19 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.09 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.09 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.07 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.0 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.99 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.98 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.94 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.87 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.87 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.86 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.86 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.8 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.79 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.76 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 94.75 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.64 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.62 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.59 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.58 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.58 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.55 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.52 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.49 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.48 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.43 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.4 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.37 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.37 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 94.34 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.31 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.31 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.24 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.19 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.12 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.07 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.03 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.94 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.81 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 93.76 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.75 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.71 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 93.66 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.66 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.63 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.55 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.44 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.39 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.35 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.29 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.26 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.25 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.21 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 93.2 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.11 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.05 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.05 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.98 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.92 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.83 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 92.59 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 92.56 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.52 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.51 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.4 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 92.38 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.27 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.12 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.05 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 91.92 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.58 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 91.47 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.38 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.34 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 91.19 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 91.15 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.0 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.98 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 90.85 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 90.7 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 90.65 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.65 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.53 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 90.51 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.43 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.31 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 90.29 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 90.12 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.11 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.95 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.85 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 89.78 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 89.64 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 89.59 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.56 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.27 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 89.24 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.05 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 88.55 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.46 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.4 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.39 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 88.37 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 88.24 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 88.18 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 88.01 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.0 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.99 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 87.88 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 87.85 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 87.64 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 87.6 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 87.54 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.46 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 87.23 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 87.22 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 87.17 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 87.06 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.86 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 86.83 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 86.82 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.5 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 86.38 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.17 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 86.01 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 85.76 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 85.75 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 85.65 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.55 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 85.45 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 84.99 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 84.95 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 84.91 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.85 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 84.66 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 84.65 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.25 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 84.14 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 84.13 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 83.82 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 83.68 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 83.65 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 83.63 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 83.44 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 83.4 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 83.12 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 83.08 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 82.72 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 82.72 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 82.69 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.61 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 82.56 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.52 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 82.5 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 82.5 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 82.43 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 82.43 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 82.05 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 81.84 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 81.83 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 81.72 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 81.7 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 81.59 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 81.56 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 81.46 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 81.43 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 81.35 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 81.33 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 81.3 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 81.3 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 80.93 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 80.83 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 80.79 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 80.78 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 80.77 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 80.7 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 80.61 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 80.59 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 80.55 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 80.52 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 80.47 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 80.39 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 80.2 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 80.18 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 80.01 |
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6.3e-32 Score=262.21 Aligned_cols=189 Identities=31% Similarity=0.428 Sum_probs=164.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+||||+++|.+||+ .||+|++||.|+++++.|++|..|++|+++.+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~---------------------------~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~ 53 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSA---------------------------RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEA 53 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHH
T ss_pred CEEEEECCCHhHHHHHHHHHh---------------------------CCCcEEEEeCCHHHHHHhcccCCcccchhhhh
Confidence 799999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcC---CCcEEEEecCCchH
Q psy11160 86 VVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIAT---DNKIVVEKSTVPVR 161 (598)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~ivv~~STv~~~ 161 (598)
.+.+.. ..++.+++|+.+++++||++|+|||||.+.+ ..+|..++.++.+.+.+.++ ++++||++||++||
T Consensus 54 ~l~~~~~~~~~~~~~~~~~~i~~~d~i~i~VpTP~~~~-----~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pG 128 (202)
T d1mv8a2 54 LLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKN-----GDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPG 128 (202)
T ss_dssp HHHHHHHTTCEEEESCHHHHHHTCSEEEECCCCCBCTT-----SSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTT
T ss_pred hhhhhhcccccccCCCHHHHHhhCCEEEEecCcccccc-----ccccchhhhhhhhhhhheeecccCCcceeeccccCCc
Confidence 887643 5789999999999999999999999998654 37888888888887776654 77899999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh--cccCCceeeEEE
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA--NHKTNVQFQILS 239 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~--~~~~g~~~~l~~ 239 (598)
|++++.. ++++. ..+.+.+|.+++
T Consensus 129 tt~~~~~------------------------------------------------------~~l~~~~~~~~~~~~~~~~ 154 (202)
T d1mv8a2 129 TVNNVVI------------------------------------------------------PLIEDCSGKKAGVDFGVGT 154 (202)
T ss_dssp HHHHTHH------------------------------------------------------HHHHHHHSCCBTTTBEEEE
T ss_pred chhhhhh------------------------------------------------------hhhhccccccccccccchh
Confidence 9987765 23333 123567899999
Q ss_pred CCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhccc
Q psy11160 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWI 284 (598)
Q Consensus 240 ~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~ 284 (598)
+|||+.+|.+++++.+|+|+++|+.+. ++.+.++.+|+.+.
T Consensus 155 ~PE~~~~G~a~~d~~~~~~iViG~~~~----~~~~~~~~ly~~i~ 195 (202)
T d1mv8a2 155 NPEFLRESTAIKDYDFPPMTVIGELDK----QTGDLLEEIYRELD 195 (202)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEESSH----HHHHHHHHHHTTSS
T ss_pred hhhhhcccchhhhhcCCCeEEEEeCCH----HHHHHHHHHHHhcC
Confidence 999999999999999999999998764 67888999999986
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.94 E-value=6.3e-27 Score=225.18 Aligned_cols=165 Identities=24% Similarity=0.354 Sum_probs=136.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+||||+++|..|+ .|++|++||+|+++++.+++|..|++|+++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a----------------------------~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~ 52 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS----------------------------LQNEVTIVDILPSKVDKINNGLSPIQDEYIEY 52 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT----------------------------TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHH
T ss_pred CEEEEECCChhHHHHHHHHH----------------------------CCCcEEEEECCHHHHHHHhhcccccchhhHHH
Confidence 79999999999999998775 48999999999999999999999999999999
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
+++.. ..+++++++...++.++|++++|||||.+... ...++..++++.+.+... +++.+++.+||+|||++++
T Consensus 53 ~~~~~-~~~~~~~~~~~~~~~~~~ii~v~vpt~~~~~~----~~~~~~~v~~~~~~~~~~-~~~~~iii~Stv~pgt~~~ 126 (196)
T d1dlja2 53 YLKSK-QLSIKATLDSKAAYKEAELVIIATPTNYNSRI----NYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITE 126 (196)
T ss_dssp HHHHS-CCCEEEESCHHHHHHHCSEEEECCCCCEETTT----TEECCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHH
T ss_pred Hhhhh-hhhhhccchhhhhhhccccccccCCccccccC----CCcceeEEeehhhhhhhc-ccceeEEeeeecCceeeee
Confidence 87763 34577888888889999999999999975431 345777777777776654 5677888888888888866
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
+.. .+ .++.++++|||++
T Consensus 127 ~~~-------------------------------------------------------~~-------~~~~~~~~PE~i~ 144 (196)
T d1dlja2 127 MRQ-------------------------------------------------------KF-------QTDRIIFSPEFLR 144 (196)
T ss_dssp HHH-------------------------------------------------------HT-------TCSCEEECCCCCC
T ss_pred eee-------------------------------------------------------cc-------chhhhccchhhcc
Confidence 543 11 2356899999999
Q ss_pred cCchhhhcCCCCEEEEccCCC
Q psy11160 246 EGTAMTDLFNADRILIGGEET 266 (598)
Q Consensus 246 ~G~a~~~~~~p~rv~vGg~~~ 266 (598)
+|.+++++.+|+|+++|+++.
T Consensus 145 ~G~ai~d~~~p~riv~G~~~~ 165 (196)
T d1dlja2 145 ESKALYDNLYPSRIIVSCEEN 165 (196)
T ss_dssp TTSTTHHHHSCSCEEEECCTT
T ss_pred hhhhHhhccCCCEEEEeCCHh
Confidence 999999999999999888764
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.84 E-value=3e-22 Score=181.63 Aligned_cols=120 Identities=23% Similarity=0.353 Sum_probs=91.1
Q ss_pred cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 390 NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 390 ~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
.++.++||+|||+||||||+|+|+||++.|++.|.+.|++|.+|||.++...+.+....+......+....+..++++++
T Consensus 9 ~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i 88 (136)
T d1mv8a3 9 TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVV 88 (136)
T ss_dssp TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHH
T ss_pred HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhh
Confidence 45678999999999999999999999999999999999999999998865433211000000000011124578999999
Q ss_pred cCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhh
Q psy11160 470 KNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDAL 514 (598)
Q Consensus 470 ~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~ 514 (598)
+++|++|++|.|++|+++. ..++++++|||+||+++..+.
T Consensus 89 ~~~D~ivi~t~h~~f~~l~-----~~~~~~~~I~D~~~~~~~~~~ 128 (136)
T d1mv8a3 89 ASSDVLVLGNGDELFVDLV-----NKTPSGKKLVDLVGFMPHTTT 128 (136)
T ss_dssp HHCSEEEECSCCGGGHHHH-----HSCCTTCEEEESSSCCSSSCC
T ss_pred hhceEEEEEeCCHHHHHHH-----HHhcCCCEEEECCCCCChhHh
Confidence 9999999999999998653 335556699999999987543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=1.9e-20 Score=174.20 Aligned_cols=158 Identities=19% Similarity=0.262 Sum_probs=128.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.+||..|++ +||+|++||+++++++.+.+.
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~---------------------------~G~~V~~~d~~~~~~~~~~~~----------- 42 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLK---------------------------AGYSLVVSDRNPEAIADVIAA----------- 42 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHT-----------
T ss_pred CEEEEEehhHHHHHHHHHHHH---------------------------CCCeEEEEeCCcchhHHHHHh-----------
Confidence 699999999999999999999 899999999999999988753
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+.....++.+++++||+||+|||++. .+++++ +.+.+.++++++||+.||+.|.+
T Consensus 43 --------~~~~~~~~~e~~~~~d~ii~~v~~~~--------------~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~ 100 (161)
T d1vpda2 43 --------GAETASTAKAIAEQCDVIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVLIDMSSIAPLA 100 (161)
T ss_dssp --------TCEECSSHHHHHHHCSEEEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHH
T ss_pred --------hhhhcccHHHHHhCCCeEEEEcCCHH--------------HHHHHHhCCcchhhccCCCCEEEECCCCCHHH
Confidence 24567889999999999999998763 456655 57889999999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++.. +.+ .++.++++|.
T Consensus 101 ~~~~~~~-------------------------------------------------------~~~-----~g~~~vdapv 120 (161)
T d1vpda2 101 SREISDA-------------------------------------------------------LKA-----KGVEMLDAPV 120 (161)
T ss_dssp HHHHHHH-------------------------------------------------------HHT-----TTCEEEECCE
T ss_pred HHHHHHH-------------------------------------------------------HHH-----cCCceecccc
Confidence 9877651 222 2357888998
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT 292 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~ 292 (598)
...+..+..+.+ .+++||+. +++++++++|+.++. ..+++|
T Consensus 121 ~gg~~~a~~g~l---~~~~gG~~-----~~~~~~~~il~~~~~-~i~~~G 161 (161)
T d1vpda2 121 SGGEPKAIDGTL---SVMVGGDK-----AIFDKYYDLMKAMAG-SVVHTG 161 (161)
T ss_dssp ESHHHHHHHTCE---EEEEESCH-----HHHHHHHHHHHTTEE-EEEEEE
T ss_pred cCChhHHhcCCe---EEEEcCCH-----HHHHHHHHHHHHhcC-ceEECC
Confidence 876655655544 48899975 689999999999973 455553
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.78 E-value=2.5e-19 Score=152.73 Aligned_cols=81 Identities=26% Similarity=0.505 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcccc--ccccccCccccccchhhhHHHHHHHHHHc
Q psy11160 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIG--AKFLQASVGFGGSCFQKDILNLVYICECL 372 (598)
Q Consensus 295 ~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~--~~~l~~~~gfgg~cl~KD~~~L~~~a~~~ 372 (598)
++||++|++.|+|++++|+|+||++.+|+++|+|..+|++++..++|++ ..++.||+||||+|||||+.+|.+.+++.
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~~pG~G~GG~ClpKD~~al~~~a~~~ 81 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQL 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccccCCcccCCccccchhHHHHHHHHHHc
Confidence 6899999999999999999999999999999999999999999999987 45778999999999999999999999999
Q ss_pred CCh
Q psy11160 373 NLP 375 (598)
Q Consensus 373 G~~ 375 (598)
|++
T Consensus 82 ~~~ 84 (98)
T d1mv8a1 82 DVE 84 (98)
T ss_dssp TCC
T ss_pred CCC
Confidence 986
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.77 E-value=1.6e-18 Score=161.21 Aligned_cols=159 Identities=17% Similarity=0.229 Sum_probs=126.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+||+|||+|.||.+||.+|++ +||+|.+||+++++.+.+...
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~---------------------------~g~~v~~~d~~~~~~~~~~~~---------- 43 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLK---------------------------AGYLLNVFDLVQSAVDGLVAA---------- 43 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEECSSHHHHHHHHHT----------
T ss_pred CCEEEEEEEHHHHHHHHHHHHH---------------------------CCCeEEEEECchhhhhhhhhh----------
Confidence 4689999999999999999999 899999999999999987742
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.....++.++++.+|+|++||+.+. .+++++ ..+.+.+.++++|++.||+.|.
T Consensus 44 ---------~~~~~~~~~e~~~~~diii~~v~~~~--------------~~~~v~~~~~~~~~~l~~g~iiid~st~~p~ 100 (162)
T d3cuma2 44 ---------GASAARSARDAVQGADVVISMLPASQ--------------HVEGLYLDDDGLLAHIAPGTLVLECSTIAPT 100 (162)
T ss_dssp ---------TCEECSSHHHHHTSCSEEEECCSCHH--------------HHHHHHHSTTCHHHHSCTTCEEEECSCCCHH
T ss_pred ---------hccccchhhhhccccCeeeecccchh--------------hHHHHHhccccccccCCCCCEEEECCCCCHH
Confidence 24556788889999999999997642 344444 4578889999999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+++++.. .+.+ .++.++++|
T Consensus 101 ~~~~~~~-------------------------------------------------------~~~~-----~gi~~~dap 120 (162)
T d3cuma2 101 SARKIHA-------------------------------------------------------AARE-----RGLAMLDAP 120 (162)
T ss_dssp HHHHHHH-------------------------------------------------------HHHH-----TTCEEEECC
T ss_pred HHHHHHH-------------------------------------------------------HHHH-----CCCcEEecc
Confidence 9977765 2333 235678899
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT 292 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~ 292 (598)
....+..+..+.+ .+++||+. +++++++++++.++. ..+++|
T Consensus 121 v~Gg~~~a~~G~l---~~~~gG~~-----~~~~~~~~il~~~~~-~v~~~G 162 (162)
T d3cuma2 121 VSGGTAGAAAGTL---TFMVGGDA-----EALEKARPLFEAMGR-NIFHAG 162 (162)
T ss_dssp EESCHHHHHHTCE---EEEEESCH-----HHHHHHHHHHHHHEE-EEEEEE
T ss_pred cccCccccccCCe---EEEecCCH-----HHHHHHHHHHHHHcC-ccEECc
Confidence 8887766666655 58899975 689999999999973 455553
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.72 E-value=1.1e-17 Score=142.44 Aligned_cols=79 Identities=30% Similarity=0.500 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCC
Q psy11160 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNL 374 (598)
Q Consensus 295 ~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~ 374 (598)
.+||++|++.|+|++++|+|+||+..+|+++|+|..++++++..++|++.+++.|+.||||+|||||+.+|.. ...|+
T Consensus 2 ~eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~~~~~pg~g~GG~ClpKD~~al~~--~~~~~ 79 (98)
T d1dlja1 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLLA--NYNNI 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHHH--HHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCCccccCCCCcccccCcccHHHHHH--HhcCC
Confidence 4799999999999999999999999999999999999999999999999889999999999999999999964 44455
Q ss_pred h
Q psy11160 375 P 375 (598)
Q Consensus 375 ~ 375 (598)
+
T Consensus 80 ~ 80 (98)
T d1dlja1 80 P 80 (98)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.69 E-value=2.2e-17 Score=143.23 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=77.3
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
.++|||||+||||||+|+||||++.|++.|.+.|++|.+|||++....... ...+..++.++++.+|
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~-------------~~~~~~~l~~~~~~sD 81 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESED-------------QSVLVNDLENFKKQAN 81 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTC-------------CSEECCCHHHHHHHCS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhcc-------------CCEEEeCHHHHHhhCC
Confidence 468999999999999999999999999999999999999999997543211 2356789999999999
Q ss_pred EEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh
Q psy11160 474 AIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH 511 (598)
Q Consensus 474 alii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~ 511 (598)
++|+.+.|.+|..+. .. | .+|++|.+
T Consensus 82 iII~~~~~~~~~~~~----------~K-v-~tr~if~~ 107 (108)
T d1dlja3 82 IIVTNRYDNELQDVK----------NK-V-YSRDIFGR 107 (108)
T ss_dssp EEECSSCCGGGGGGG----------GG-E-ECCCCSSC
T ss_pred EEEEcCCchHHHhcC----------cc-c-CCCCCCCC
Confidence 999999999887542 11 2 38999865
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.67 E-value=8.5e-17 Score=151.28 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=120.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.+|+|||+|.||.+||..|++ +||+|++||+++++++.+.+.......
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~~~~~~~~----- 50 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMND---------------------------HGFVVCAFNRTVSKVDDFLANEAKGTK----- 50 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSTHHHHHHHHTTTTTSS-----
T ss_pred CcEEEEeEhHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHhcccccc-----
Confidence 589999999999999999999 899999999999999998753211100
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
........++.+++.++|.++++++.+ +.+.++.+.+.+.++++++|++.||+.|.++++
T Consensus 51 ------~~~a~~~~~~~~~~~~~~~ii~~~~~~--------------~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~ 110 (176)
T d2pgda2 51 ------VLGAHSLEEMVSKLKKPRRIILLVKAG--------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMR 110 (176)
T ss_dssp ------CEECSSHHHHHHHBCSSCEEEECSCTT--------------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHH
T ss_pred ------ccchhhhhhhhhhhcccceEEEecCch--------------HHHHHHHHHHHhccccCcEEEecCcchhHHHHH
Confidence 001112234556778899999998654 367888999999999999999999999999987
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
++.. +.+ .++.++++|....
T Consensus 111 ~~~~-------------------------------------------------------~~~-----~g~~~ldapvsGg 130 (176)
T d2pgda2 111 RCRD-------------------------------------------------------LKD-----KGILFVGSGVSGG 130 (176)
T ss_dssp HHHH-------------------------------------------------------HHH-----TTCEEEEEEEESH
T ss_pred HHHH-------------------------------------------------------HHh-----cCCceeccccccC
Confidence 7652 222 1356778887766
Q ss_pred cCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC
Q psy11160 246 EGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP 285 (598)
Q Consensus 246 ~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~ 285 (598)
+..+..+. .+|+||+. +++++++++|+.++.
T Consensus 131 ~~~A~~G~----~~~~gG~~-----~~~~~~~~il~~~~~ 161 (176)
T d2pgda2 131 EDGARYGP----SLMPGGNK-----EAWPHIKAIFQGIAA 161 (176)
T ss_dssp HHHHHHCC----EEEEEECT-----TTHHHHHHHHHHHSC
T ss_pred cccccCCc----EEEcCCCH-----HHHHHHHHHHHHHhc
Confidence 55554442 37889987 478999999999974
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.62 E-value=3.2e-15 Score=138.51 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=82.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||+++|..|++ +||+|++||++++.++.+++...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~---------------------------~g~~V~~~d~~~~~~~~a~~~~~--------- 44 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRR---------------------------RGHYLIGVSRQQSTCEKAVERQL--------- 44 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHTTS---------
T ss_pred CEEEEEeecHHHHHHHHHHHH---------------------------CCCEEEEEECCchHHHHHHHhhc---------
Confidence 699999999999999999999 89999999999999988764211
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
-....++. +++++||+||+|||.. .++++++++.+.++++++|+..+|+.....+.
T Consensus 45 --------~~~~~~~~-~~~~~~DiIilavp~~---------------~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~ 100 (165)
T d2f1ka2 45 --------VDEAGQDL-SLLQTAKIIFLCTPIQ---------------LILPTLEKLIPHLSPTAIVTDVASVKTAIAEP 100 (165)
T ss_dssp --------CSEEESCG-GGGTTCSEEEECSCHH---------------HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHH
T ss_pred --------cceeeeec-ccccccccccccCcHh---------------hhhhhhhhhhhhcccccceeeccccchHHHHH
Confidence 01344454 5899999999998642 57889999999999999999999887666543
Q ss_pred H
Q psy11160 166 I 166 (598)
Q Consensus 166 ~ 166 (598)
+
T Consensus 101 ~ 101 (165)
T d2f1ka2 101 A 101 (165)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.59 E-value=1.3e-15 Score=142.95 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=117.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
|||+|||+|.||.+||..|++ +||+|++||+++++.+.+.+ +...-..
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~---------------------------~G~~V~~~dr~~~~~~~l~~~~~~~~~~---- 50 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAE---------------------------KGFKVAVFNRTYSKSEEFMKANASAPFA---- 50 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSHHHHHHHHHHTTTSTTG----
T ss_pred CEEEEEeehHHHHHHHHHHHH---------------------------CCCeEEEEECCHHHHHHHHHcCCccccc----
Confidence 799999999999999999999 89999999999999999864 3211110
Q ss_pred HHHhhhcCCceEEecCHH---HHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIK---SAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~---~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.......+.. ..+..++.++++++.. ..+..++..+...+.+++++++.||+.|.
T Consensus 51 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~iii~~st~~~~ 108 (178)
T d1pgja2 51 --------GNLKAFETMEAFAASLKKPRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFK 108 (178)
T ss_dssp --------GGEEECSCHHHHHHHBCSSCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHH
T ss_pred --------cchhhhhhhhHHHHhcccceEEEEeecCc--------------chhhhhhhhhhhhccccceecccCccchh
Confidence 1233333332 3456788888887533 25677888999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
++++++. .+.+ .++.++++|
T Consensus 109 ~~~~~~~-------------------------------------------------------~l~~-----~~~~~ldap 128 (178)
T d1pgja2 109 DQGRRAQ-------------------------------------------------------QLEA-----AGLRFLGMG 128 (178)
T ss_dssp HHHHHHH-------------------------------------------------------HHHT-----TTCEEEEEE
T ss_pred HHHHHHH-------------------------------------------------------HHhh-----cceeEeccc
Confidence 9977765 2222 235678888
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP 285 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~ 285 (598)
.+..+..+..+. .+|+||+. +++++++++|+.+++
T Consensus 129 v~g~~~~a~~g~----~~mvgG~~-----~~~~~v~pil~~~~~ 163 (178)
T d1pgja2 129 ISGGEEGARKGP----AFFPGGTL-----SVWEEIRPIVEAAAA 163 (178)
T ss_dssp EESHHHHHHHCC----EEEEEECH-----HHHHHHHHHHHHHSC
T ss_pred ccCCcchhcCCc----EEEeeCCH-----HHHHHHHHHHHHHhc
Confidence 876554444443 37899975 689999999999984
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=4.1e-15 Score=136.81 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=116.4
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
||+|||+|.||.+||.+|.+ .|+.| +|+++.++...+.+..
T Consensus 2 kIg~IGlG~MG~~ma~~L~~---------------------------~g~~~-~~~~~~~~~~~~~~~~----------- 42 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLAR---------------------------RFPTL-VWNRTFEKALRHQEEF----------- 42 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHT---------------------------TSCEE-EECSSTHHHHHHHHHH-----------
T ss_pred eEEEEeHHHHHHHHHHHHHh---------------------------CCCEE-EEeCCHHHHHHHHHHc-----------
Confidence 79999999999999999998 78766 5777777666554310
Q ss_pred HhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHHH
Q psy11160 87 VKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESI 166 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~ 166 (598)
.. .... .+.+.++|++|+++|.+ ..+......+.+.+.++.++++.||+.|.+++++
T Consensus 43 -------~~-~~~~-~~~~~~~~~~i~~~~~~--------------~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~ 99 (156)
T d2cvza2 43 -------GS-EAVP-LERVAEARVIFTCLPTT--------------REVYEVAEALYPYLREGTYWVDATSGEPEASRRL 99 (156)
T ss_dssp -------CC-EECC-GGGGGGCSEEEECCSSH--------------HHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHH
T ss_pred -------CC-cccc-cccccceeEEEecccch--------------hhhhhhhccccccccccccccccccCCHHHHHHH
Confidence 11 1223 34678899999998654 2577888899999999999999999999999887
Q ss_pred HHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCc
Q psy11160 167 MNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSE 246 (598)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~ 246 (598)
++ .+.+ .++.++++|....+
T Consensus 100 ~~-------------------------------------------------------~~~~-----~gi~~ldapVsGg~ 119 (156)
T d2cvza2 100 AE-------------------------------------------------------RLRE-----KGVTYLDAPVSGGT 119 (156)
T ss_dssp HH-------------------------------------------------------HHHT-----TTEEEEECCEESHH
T ss_pred HH-------------------------------------------------------HHHH-----cCCeEEeccccCch
Confidence 65 2332 23678899988776
Q ss_pred CchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec
Q psy11160 247 GTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT 292 (598)
Q Consensus 247 G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~ 292 (598)
-.+..+.+ .+|+||+. ++++++++++. +.. .++++|
T Consensus 120 ~~A~~G~L---~~~vgG~~-----~~~~~~~p~L~-~~~-~v~~~G 155 (156)
T d2cvza2 120 SGAEAGTL---TVMLGGPE-----EAVERVRPFLA-YAK-KVVHVG 155 (156)
T ss_dssp HHHHHTCE---EEEEESCH-----HHHHHHGGGCT-TEE-EEEEEE
T ss_pred hhhccCCE---EEEEeCCH-----HHHHHHHHHHH-hcC-cCEEeC
Confidence 66666666 48899986 68999999884 663 566665
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.48 E-value=4.4e-14 Score=134.19 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=83.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~ 82 (598)
.|+||+|||+|.||+++|..|++ +||+|++|+++++.++.+++ +..+.+.|+
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~---------------------------~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~ 58 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSK---------------------------KCREVCVWHMNEEEVRLVNEKRENVLFLKG 58 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHT---------------------------TEEEEEEECSCHHHHHHHHHHTBCTTTSTT
T ss_pred eeceEEEECCCHHHHHHHHHHHH---------------------------cCCeEEEEEecHHHHHHHhhcccccccccc
Confidence 34689999999999999999999 89999999999999999985 556667666
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-----cCCCcEEEEe
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-----ATDNKIVVEK 155 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~ivv~~ 155 (598)
+. .+.++++++|+++++++||+||++||+. .++++++++.+. .+++..++..
T Consensus 59 ~~------l~~~i~~t~~l~~a~~~ad~iiiavPs~---------------~~~~~~~~~~~~~~~~~~~~~~~ii~~ 115 (189)
T d1n1ea2 59 VQ------LASNITFTSDVEKAYNGAEIILFVIPTQ---------------FLRGFFEKSGGNLIAYAKEKQVPVLVC 115 (189)
T ss_dssp CB------CCTTEEEESCHHHHHTTCSCEEECSCHH---------------HHHHHHHHHCHHHHHHHHHHTCCEEEC
T ss_pred cc------cccccccchhhhhccCCCCEEEEcCcHH---------------HHHHHHHHHHhhhhhhhccCCcEEEEE
Confidence 42 2467999999999999999999999764 466777766543 3445555543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.48 E-value=7.7e-14 Score=130.26 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=89.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~~~ 84 (598)
+||+|||+|.||+.+|..|++ +||+|++||+++++++.+++. ..+.+.++..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~---------------------------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 54 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL---------------------------KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLA 54 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHHTSEEEESSSCC
T ss_pred CEEEEECccHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHcCCCchhhhhhh
Confidence 689999999999999999999 899999999999999999853 3333333321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
. .......++++.+++++||+||++||++ .+++++++|.+++.++++|+..++...++.
T Consensus 55 ~-----~~~~~~~~~~~~e~~~~aD~iii~v~~~---------------~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~ 113 (184)
T d1bg6a2 55 G-----TAHPDLLTSDIGLAVKDADVILIVVPAI---------------HHASIAANIASYISEGQLIILNPGATGGAL 113 (184)
T ss_dssp E-----EECCSEEESCHHHHHTTCSEEEECSCGG---------------GHHHHHHHHGGGCCTTCEEEESSCCSSHHH
T ss_pred h-----hhhhhhhhhhhHhHhcCCCEEEEEEchh---------------HHHHHHHHhhhccCCCCEEEEeCCCCccHH
Confidence 1 1134567889999999999999998765 368889999999999999988777666543
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.47 E-value=3.4e-14 Score=122.85 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=49.5
Q ss_pred HHHHHHhcCC-CCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCCCCc
Q psy11160 537 EKIISSLFNT-VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMSR 595 (598)
Q Consensus 537 ~~i~~~~~~~-~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~~~~ 595 (598)
+++.+.+... ...++||||||||||||||+|+||++.|++.|.+.|++|.+|||++...
T Consensus 2 k~ii~~l~~~~~~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~ 61 (108)
T d1dlja3 2 KQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL 61 (108)
T ss_dssp HHHHHHHTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCC
T ss_pred HHHHHHHHhccCCCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChh
Confidence 4555556322 2335899999999999999999999999999999999999999999753
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.42 E-value=5.6e-14 Score=126.36 Aligned_cols=56 Identities=29% Similarity=0.588 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCCC
Q psy11160 537 EKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLM 593 (598)
Q Consensus 537 ~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~~ 593 (598)
+++.+.+ +++.++||+|||+||||||||+|+||++.|++.|.++|++|.+|||++.
T Consensus 2 ~~~~~~i-~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~ 57 (136)
T d1mv8a3 2 QKAFDLI-TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVE 57 (136)
T ss_dssp HHHHHHH-TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred hHHHHHH-HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCC
Confidence 4555555 4578899999999999999999999999999999999999999999864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.38 E-value=2.3e-13 Score=124.26 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=76.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.+||..|++ +||+|++||+++.+...+...
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~---------------------------~g~~v~~~~~~~~~~~~~~~~----------- 42 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRS---------------------------RGVEVVTSLEGRSPSTIERAR----------- 42 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHH---------------------------TTCEEEECCTTCCHHHHHHHH-----------
T ss_pred CEEEEEcHHHHHHHHHHHHHH---------------------------CCCeEEEEcCchhHHHHHhhh-----------
Confidence 699999999999999999999 899999999887666554321
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
+.....++.+++++||+||+|||.+. ..+++..+.+.+ ++++++.||+.|.++++
T Consensus 43 --------~~~~~~~~~e~~~~~diIi~~v~~~~---------------~~~~~~~~~~~~--~~~~id~st~~p~~~~~ 97 (152)
T d1i36a2 43 --------TVGVTETSEEDVYSCPVVISAVTPGV---------------ALGAARRAGRHV--RGIYVDINNISPETVRM 97 (152)
T ss_dssp --------HHTCEECCHHHHHTSSEEEECSCGGG---------------HHHHHHHHHTTC--CSEEEECSCCCHHHHHH
T ss_pred --------cccccccHHHHHhhcCeEEEEecCch---------------HHHHHHhhcccC--CceeeccCcCCHHHHHH
Confidence 01123456789999999999997431 344555555544 67899999999999987
Q ss_pred HHH
Q psy11160 166 IMN 168 (598)
Q Consensus 166 ~~~ 168 (598)
++.
T Consensus 98 l~~ 100 (152)
T d1i36a2 98 ASS 100 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.33 E-value=1.4e-13 Score=134.97 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=87.5
Q ss_pred CCceEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhc-C----------------CceEEecCHHHHhccCcEEEEec
Q psy11160 54 PNIQVTVVDKSEER-IRQWNSNKLPIYEPGLDEVVKKTR-D----------------VNLFFSTDIKSAIQKAQLIFISV 115 (598)
Q Consensus 54 ~g~~v~~~d~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~-~----------------~~~~~~~~~~~~~~~adviii~v 115 (598)
.|++|++.|.|+++ ++.+++|..++++|++.+.+.+.. . .+++.++|+.+++++||+||+||
T Consensus 70 ~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~v 149 (242)
T d2b0ja2 70 EPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWL 149 (242)
T ss_dssp SSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECC
T ss_pred cCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEee
Confidence 89999999999877 588999999999999999886531 1 23688999999999999999999
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHHHHH
Q psy11160 116 NTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMN 168 (598)
Q Consensus 116 ~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~~~ 168 (598)
|.+. .+.+++++|.++++++++|++.||+++..++++..
T Consensus 150 P~~~--------------~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e 188 (242)
T d2b0ja2 150 PKGN--------------KQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188 (242)
T ss_dssp TTCT--------------THHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH
T ss_pred ecHH--------------HHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH
Confidence 8763 36788899999999999999999999999877765
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=1e-10 Score=107.93 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=80.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.||.++|..|.+ .| .+|++||+|++..+.+.+...
T Consensus 2 k~I~IIG~G~mG~sla~~L~~---------------------------~g~~~~I~~~D~~~~~~~~a~~~~~------- 47 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRR---------------------------SGFKGKIYGYDINPESISKAVDLGI------- 47 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHH---------------------------TTCCSEEEEECSCHHHHHHHHHTTS-------
T ss_pred CEEEEEccCHHHHHHHHHHHh---------------------------cCCCeEEEEEECChHHHHHHHHhhc-------
Confidence 579999999999999999998 55 489999999999988774311
Q ss_pred HHHHhhhcCCceEEecCHH-HHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIK-SAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
....+++.. ....++|+||+|+|.. .+.++++++.++++++++|++.+++-...
T Consensus 48 ----------~~~~~~~~~~~~~~~~dlIila~p~~---------------~~~~vl~~l~~~~~~~~ii~d~~s~k~~~ 102 (171)
T d2g5ca2 48 ----------IDEGTTSIAKVEDFSPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKL 102 (171)
T ss_dssp ----------CSEEESCGGGGGGTCCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEECCSCCTHH
T ss_pred ----------chhhhhhhhhhhccccccccccCCch---------------hhhhhhhhhhccccccccccccccccHHH
Confidence 012334433 2345899999997632 57888899999999999999999988777
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
.+.+..
T Consensus 103 ~~~~~~ 108 (171)
T d2g5ca2 103 VYDLEN 108 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.5e-10 Score=109.69 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=82.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCC--------
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKL-------- 76 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~-------- 76 (598)
+.||+|||+|.||..+|..++. +|++|++||++++.++...+...
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~---------------------------~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~ 56 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAA---------------------------TGHTVVLVDQTEDILAKSKKGIEESLRKVAK 56 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECcCHHHHHHHHHHHh---------------------------CCCcEEEEECChHHHHHHHhhHHHHHHHHHH
Confidence 4799999999999999999999 89999999999988775543210
Q ss_pred --CCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 77 --PIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 77 --~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
....+...+........++..++|+.+++++||+|+-|++.. ++.=++++++|.+..++++++.-
T Consensus 57 ~~~~~~~~~~~~~~~~~l~~i~~~~d~~~a~~~ad~ViEav~E~-------------l~~K~~v~~~l~~~~~~~~ilas 123 (192)
T d1f0ya2 57 KKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVEN-------------LKVKNELFKRLDKFAAEHTIFAS 123 (192)
T ss_dssp TTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEEECCCSC-------------HHHHHHHHHHHTTTSCTTCEEEE
T ss_pred hhhhccchhhHHHHHHHHhhccccchhHhhhcccceehhhcccc-------------hhHHHHHHHHHhhhcccCceeec
Confidence 000000000001111246889999999999999999998653 34456788999999999988754
Q ss_pred e-cCCch
Q psy11160 155 K-STVPV 160 (598)
Q Consensus 155 ~-STv~~ 160 (598)
. |+.++
T Consensus 124 nTS~l~i 130 (192)
T d1f0ya2 124 NTSSLQI 130 (192)
T ss_dssp CCSSSCH
T ss_pred cCccccc
Confidence 3 44443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.17 E-value=1.6e-11 Score=115.06 Aligned_cols=100 Identities=18% Similarity=0.299 Sum_probs=80.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC--CHHHHHHHHcCC-CCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK--SEERIRQWNSNK-LPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~--~~~~~~~~~~~~-~~~~e~~ 82 (598)
|||+|||+|.||.++|..|++ +|++|++|.+ +++.++.++++. .+.+.+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~---------------------------~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~ 53 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVD---------------------------NGNEVRIWGTEFDTEILKSISAGREHPRLGVK 53 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHH---------------------------HCCEEEEECCGGGHHHHHHHHTTCCBTTTTBC
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEEecccHHHHHHHhhhhhhhhhcch
Confidence 799999999999999999999 8999999987 677899998653 3333221
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
+ ....+.+++|..++++++|+||++||+. .++.+++++.+++++..+++.
T Consensus 54 ~-------~~~~i~~~~~~~~~~~~ad~Ii~avps~---------------~~~~~~~~l~~~l~~~~ii~~ 103 (180)
T d1txga2 54 L-------NGVEIFWPEQLEKCLENAEVVLLGVSTD---------------GVLPVMSRILPYLKDQYIVLI 103 (180)
T ss_dssp C-------CSEEEECGGGHHHHHTTCSEEEECSCGG---------------GHHHHHHHHTTTCCSCEEEEC
T ss_pred h-------ccccccccccHHHHHhccchhhcccchh---------------hhHHHHHhhccccccceeccc
Confidence 1 1235778899999999999999998753 478899999999987766654
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.15 E-value=1.2e-10 Score=105.52 Aligned_cols=91 Identities=15% Similarity=0.317 Sum_probs=74.9
Q ss_pred CCCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 3 QTISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 3 ~~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
..++||+||| +|.||.+||..|.+ +||+|++||++++..
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~---------------------------~G~~V~~~d~~~~~~------------- 46 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRA---------------------------SGYPISILDREDWAV------------- 46 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHT---------------------------TTCCEEEECTTCGGG-------------
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHH---------------------------cCCCcEecccccccc-------------
Confidence 3467999999 99999999999999 899999999864321
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.++.+.++|++++++|.. .+..++.++.+.+++++++++.||+.+.
T Consensus 47 -------------------~~~~~~~~~~v~~~~~~~---------------~~~~v~~~~~~~~~~~~iiiD~~Svk~~ 92 (152)
T d2pv7a2 47 -------------------AESILANADVVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKRE 92 (152)
T ss_dssp -------------------HHHHHTTCSEEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHH
T ss_pred -------------------cchhhhhccccccccchh---------------hheeeeecccccccCCceEEEecccCHH
Confidence 234578899999997543 3677888999999999999999999887
Q ss_pred HHHHHH
Q psy11160 162 AAESIM 167 (598)
Q Consensus 162 ~~~~~~ 167 (598)
..+.+.
T Consensus 93 ~~~~~~ 98 (152)
T d2pv7a2 93 PLAKML 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 775553
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.11 E-value=7.9e-10 Score=103.97 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=81.5
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC-----
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP----- 77 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~----- 77 (598)
+.++||+|||+|.||..+|..++. +|++|++||++++.+++..+....
T Consensus 2 ~~I~~vaViGaG~mG~~iA~~~a~---------------------------~G~~V~l~D~~~~~l~~~~~~i~~~l~~~ 54 (186)
T d1wdka3 2 KDVKQAAVLGAGIMGGGIAYQSAS---------------------------KGTPILMKDINEHGIEQGLAEAAKLLVGR 54 (186)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHH---------------------------TTCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHhhhhhhhhhhHHhh
Confidence 457899999999999999999999 899999999999987754321000
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe-c
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK-S 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~-S 156 (598)
.....+.+........++..+++++ ++.+||+||.|+|.. ++.=++++++|.+..++++|+... |
T Consensus 55 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~adlViEav~E~-------------l~~K~~lf~~l~~~~~~~~IiaSnTS 120 (186)
T d1wdka3 55 VDKGRMTPAKMAEVLNGIRPTLSYG-DFGNVDLVVEAVVEN-------------PKVKQAVLAEVENHVREDAILASNTS 120 (186)
T ss_dssp HTTTSSCHHHHHHHHHHEEEESSST-TGGGCSEEEECCCSC-------------HHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred hcccccchhhhhhhhceeecccccc-cccccceeeeeecch-------------HHHHHHHHHHHHhhcCCCeeEEeccc
Confidence 0000000100011113577888876 699999999998653 344567889999999999988543 3
Q ss_pred CCch
Q psy11160 157 TVPV 160 (598)
Q Consensus 157 Tv~~ 160 (598)
+.++
T Consensus 121 ~l~i 124 (186)
T d1wdka3 121 TISI 124 (186)
T ss_dssp SSCH
T ss_pred cccH
Confidence 3444
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=4.3e-11 Score=108.59 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=59.6
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVV 87 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~ 87 (598)
|+|||+|.||.+||..|.+ .++.+.+|+|++++.+.+.+..
T Consensus 2 IgfIG~G~mg~~l~~~L~~---------------------------~~~~~~v~~R~~~~~~~l~~~~------------ 42 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKD---------------------------RYEIGYILSRSIDRARNLAEVY------------ 42 (153)
T ss_dssp CEEESCCHHHHHHHHTTC-------------------------------CCCEECSSHHHHHHHHHHT------------
T ss_pred EEEEeCcHHHHHHHHHHHh---------------------------CCCEEEEEeCChhhhcchhhcc------------
Confidence 7999999999999998876 4455578999999999987521
Q ss_pred hhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 88 KKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
... ..+..++++++|+||+|||.+ .+.+++.++ ..++++|+..|+..+
T Consensus 43 ------~~~-~~~~~~~~~~~DiVil~v~d~---------------~i~~v~~~l---~~~~~ivi~~s~~~~ 90 (153)
T d2i76a2 43 ------GGK-AATLEKHPELNGVVFVIVPDR---------------YIKTVANHL---NLGDAVLVHCSGFLS 90 (153)
T ss_dssp ------CCC-CCSSCCCCC---CEEECSCTT---------------THHHHHTTT---CCSSCCEEECCSSSC
T ss_pred ------ccc-ccchhhhhccCcEEEEeccch---------------hhhHHHhhh---cccceeeeecccchh
Confidence 111 234556889999999999743 244444433 247889998887654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.01 E-value=2.3e-10 Score=104.15 Aligned_cols=93 Identities=13% Similarity=0.250 Sum_probs=70.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.+++..|.+ .|++|++|++++++.+.+.+.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~---------------------------~~~~i~v~~r~~~~~~~l~~~----------- 42 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQ---------------------------TPHELIISGSSLERSKEIAEQ----------- 42 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---------------------------SSCEEEEECSSHHHHHHHHHH-----------
T ss_pred CEEEEEeccHHHHHHHHHHHh---------------------------CCCeEEEEcChHHhHHhhccc-----------
Confidence 699999999999999999998 799999999999999987642
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-EecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV-EKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv-~~STv~~~~ 162 (598)
.++..+.++.+++++||+||+||+ |. .+. .+.+.++++++|+ ..+++...+
T Consensus 43 -------~g~~~~~~~~~~~~~~dvIilavk-p~--------------~~~----~vl~~l~~~~~iis~~agi~~~~ 94 (152)
T d2ahra2 43 -------LALPYAMSHQDLIDQVDLVILGIK-PQ--------------LFE----TVLKPLHFKQPIISMAAGISLQR 94 (152)
T ss_dssp -------HTCCBCSSHHHHHHTCSEEEECSC-GG--------------GHH----HHHTTSCCCSCEEECCTTCCHHH
T ss_pred -------cceeeechhhhhhhccceeeeecc-hH--------------hHH----HHhhhcccceeEecccccccHHH
Confidence 124456788899999999999994 42 133 3445667777766 224444433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.87 E-value=5.4e-09 Score=95.19 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=83.8
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~ 79 (598)
||++.+||+|||+|.||.++|..++. .+ .+++++|+++++++....
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~---------------------------~~~~el~L~D~~~~~~~g~a~------ 49 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCAL---------------------------RELADVVLYDVVKGMPEGKAL------ 49 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHH---------------------------HTCCEEEEECSSSSHHHHHHH------
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHh---------------------------CCCceEEEEEeccccchhHHH------
Confidence 78899999999999999999998888 34 389999999887765432
Q ss_pred CCChHHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCC--CCCC----cchHHHHHHHHHHHHHcCCCcEE
Q psy11160 80 EPGLDEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNG--KGRA----ADLKYVEAAARMIAEIATDNKIV 152 (598)
Q Consensus 80 e~~~~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~--~~~~----~~~~~~~~~~~~i~~~~~~~~iv 152 (598)
++....... .......++++++++++||+|+++.+.|..+...+ .+|. .+.+.+++.++.|.++.++..++
T Consensus 50 --Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aivi 127 (154)
T d1pzga1 50 --DLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127 (154)
T ss_dssp --HHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred --HHhhhccccCCeeEEeccCchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEE
Confidence 111111111 12346778888889999999999998776543210 0111 12345667777777766654444
Q ss_pred EEecCCchHHH
Q psy11160 153 VEKSTVPVRAA 163 (598)
Q Consensus 153 v~~STv~~~~~ 163 (598)
+ .|-|.+..
T Consensus 128 i--vsNPvd~l 136 (154)
T d1pzga1 128 V--VTNPLDCM 136 (154)
T ss_dssp E--CCSSHHHH
T ss_pred E--eCCcHHHH
Confidence 4 45566554
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.85 E-value=8.3e-09 Score=93.12 Aligned_cols=125 Identities=16% Similarity=0.247 Sum_probs=76.7
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
|.+.|||+|||+|+||.++|..|+. ++...+|+++|+++++.+....-
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~-------------------------~~~~~elvL~D~~~~~~~g~a~D------- 49 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQ-------------------------QGIAEEFVIVDVVKDRTKGDALD------- 49 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHH-------------------------HTCCSEEEEECSSHHHHHHHHHH-------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh-------------------------cCCCcEEEEeecccchhHHHHHH-------
Confidence 3456899999999999999999998 11236999999999877643210
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
+..... ........+.|++ ++++||+||++.+.|..++.++.+ ...+.+.+++..+.|.++.++. +++. .|-|.
T Consensus 50 -l~~a~~-~~~~~~~~~~d~~-~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~a-iviv-vtNPv 124 (146)
T d1ez4a1 50 -LEDAQA-FTAPKKIYSGEYS-DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDG-IFLV-AANPV 124 (146)
T ss_dssp -HHGGGG-GSCCCEEEECCGG-GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCS-EEEE-CSSSH
T ss_pred -Hhcccc-ccCCceEeeccHH-HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCc-EEEE-eCCcc
Confidence 000000 0123456678886 689999999999888766433211 1223556777778888766444 4443 34466
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
...
T Consensus 125 dv~ 127 (146)
T d1ez4a1 125 DIL 127 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=5.9e-10 Score=101.57 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=72.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||+.+|..|++ .||+|++|++++++.+.++......
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~---------------------------~G~~V~~~~r~~~~~~~~~~~~~~~------- 46 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK---------------------------QGHEVQGWLRVPQPYCSVNLVETDG------- 46 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCSEEEEEEECTTS-------
T ss_pred CEEEEECcCHHHHHHHHHHHH---------------------------CCCceEEEEcCHHHhhhhccccCCc-------
Confidence 799999999999999999999 8999999999887555433211000
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.........+..+.+..+|+||++|+.+ .++++++.+.+.+.++++|+....
T Consensus 47 -----~~~~~~~~~~~~~~~~~~D~iii~vka~---------------~~~~~~~~l~~~~~~~~~Iv~~qN 98 (167)
T d1ks9a2 47 -----SIFNESLTANDPDFLATSDLLLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIHN 98 (167)
T ss_dssp -----CEEEEEEEESCHHHHHTCSEEEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEECS
T ss_pred -----cccccccccchhhhhcccceEEEeeccc---------------chHHHHHhhccccCcccEEeeccC
Confidence 0011233444456889999999998764 367888999999988887775443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.83 E-value=1.2e-09 Score=99.16 Aligned_cols=65 Identities=8% Similarity=0.294 Sum_probs=54.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|.||.+|+..|.+ .| ++|.+||+++++.+.+++.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~---------------------------~~~~~i~v~~r~~~~~~~l~~~---------- 43 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVK---------------------------QGGYRIYIANRGAEKRERLEKE---------- 43 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HCSCEEEEECSSHHHHHHHHHH----------
T ss_pred CEEEEEcCcHHHHHHHHHHHH---------------------------CCCCcEEEEeCChhHHHHhhhh----------
Confidence 699999999999999999988 44 8999999999999988752
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
.++..+++.+ +++++|+||+||+
T Consensus 44 --------~~~~~~~~~~-~v~~~Div~lavk 66 (152)
T d1yqga2 44 --------LGVETSATLP-ELHSDDVLILAVK 66 (152)
T ss_dssp --------TCCEEESSCC-CCCTTSEEEECSC
T ss_pred --------cccccccccc-cccccceEEEecC
Confidence 1345666665 5788999999985
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.73 E-value=3.7e-08 Score=88.95 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=79.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..||+|||+|.||.++|..|+. ++..-+++++|+++++.+.... ++.
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~-------------------------~~l~~el~L~Di~~~~~~g~a~--------Dl~ 52 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMN-------------------------QGIADEIVLIDANESKAIGDAM--------DFN 52 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH-------------------------HTCCSEEEEECSSHHHHHHHHH--------HHH
T ss_pred CCeEEEECcCHHHHHHHHHHHh-------------------------cCCCceEEEEeeccccccchhc--------cHh
Confidence 4799999999999999999998 1123589999999988654221 011
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+............+.++ +++++||+|+++...|.++..++.+ -..+.+.+++..+.|.++.++..+++. |-|....
T Consensus 53 ~~~~~~~~~~~~~~~d~-~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivv--tNPvd~~ 129 (148)
T d1ldna1 53 HGKVFAPKPVDIWHGDY-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA--TNPVDIL 129 (148)
T ss_dssp HHTTSSSSCCEEEECCG-GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHH
T ss_pred hCccccCCCeEEEECCH-HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEe--cCccHHH
Confidence 10000011223345666 5899999999999888766543222 123356677777888888766555553 5566554
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.59 E-value=1e-07 Score=85.06 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=76.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.++|..++. ++...++.++|+++++.+....- +..
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~-------------------------~~l~~el~L~Di~~~~~~g~~~D--------l~~ 47 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLM-------------------------KGFAREMVLIDVDKKRAEGDALD--------LIH 47 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-------------------------HTCCSEEEEECSSHHHHHHHHHH--------HHH
T ss_pred CEEEEECcCHHHHHHHHHHHh-------------------------CCCCCEEEEEecccccccchhcc--------ccc
Confidence 699999999999999999888 11235899999999887643210 000
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.. .........+.+++ ++++||+|+++...|..+..++.+ -..+...+++..+.|.++.++..+++ -|-|.+..
T Consensus 48 ~~-~~~~~~~~~~~~~~-~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aiviv--vtNPvd~~ 122 (140)
T d1a5za1 48 GT-PFTRRANIYAGDYA-DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV--VTNPVDVL 122 (140)
T ss_dssp HG-GGSCCCEEEECCGG-GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE--CSSSHHHH
T ss_pred cc-cccccccccCCcHH-HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEE--eCCcHHHH
Confidence 00 00112223455654 799999999999887765432111 11234456666777777775554444 56677664
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.59 E-value=9.4e-08 Score=85.57 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=77.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+||+|||+|+||.++|..|+. .+ .++.++|+++++.+....-... ..
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~---------------------------~~l~dl~l~D~~~~~~~~~~~Dl~~-----~~ 49 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAA---------------------------KELGDIVLLDIVEGVPQGKALDLYE-----AS 49 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HTCSEEEEECSSSSHHHHHHHHHHT-----TH
T ss_pred CeEEEECCCHHHHHHHHHHHh---------------------------CCcceEEEEeeccccchhHHHHhhc-----cc
Confidence 599999999999999999988 33 3899999998876543210000 00
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
... ....+++.+.|++ ++++||+||++.+.|.++..++.+ ...+.+.+++....|.++.+++.+++ .|-|....
T Consensus 50 ~~~--~~~~~i~~~~d~~-~~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aiviv--vtNPvDv~ 124 (142)
T d1uxja1 50 PIE--GFDVRVTGTNNYA-DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM--VNNPLDAM 124 (142)
T ss_dssp HHH--TCCCCEEEESCGG-GGTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEE--CSSSHHHH
T ss_pred ccc--CCCCEEEecCcHH-HhcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEE--eCCchHHH
Confidence 000 0123567788887 689999999999988765443222 13345566777777777655554444 67777765
Q ss_pred HHHH
Q psy11160 164 ESIM 167 (598)
Q Consensus 164 ~~~~ 167 (598)
-.++
T Consensus 125 t~~~ 128 (142)
T d1uxja1 125 TYLA 128 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.58 E-value=9.6e-08 Score=85.63 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=78.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH----HHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ----WNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~----~~~~~~~~~e~ 81 (598)
.||+|||+|.||.++|..++. ++-..+++++|+++++.+. ++... ++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~-------------------------~~l~~ElvL~D~~~~~~~g~a~Dl~~a~-~~--- 52 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQ-------------------------RGIAREIVLEDIAKERVEAEVLDMQHGS-SF--- 52 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-------------------------TTCCSEEEEECSSHHHHHHHHHHHHHTG-GG---
T ss_pred CEEEEECCCHHHHHHHHHHHh-------------------------cCCCcEEEEEEeccccchhHHHHHHhcc-cc---
Confidence 589999999999999999998 1123499999999988764 23221 01
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
....++..+++++ ++++||+|+++...|.++..++.+ -..+.+.+++....|.++.++..+++ -|-|.
T Consensus 53 --------~~~~~i~~~~~~~-~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~iv--vtNPv 121 (143)
T d1llda1 53 --------YPTVSIDGSDDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML--ITNPV 121 (143)
T ss_dssp --------STTCEEEEESCGG-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE--CCSSH
T ss_pred --------CCCceeecCCCHH-HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEE--eCCch
Confidence 0113456677775 799999999999888765432111 12245566677777777765554444 45566
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
...
T Consensus 122 Dvm 124 (143)
T d1llda1 122 DIA 124 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.54 E-value=2.2e-07 Score=84.74 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=78.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHH----HHcCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQ----WNSNKLPI 78 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~----~~~~~~~~ 78 (598)
.+||+|||+|.||.++|..|+. .|+ ++.++|+++++.+. ++......
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~---------------------------~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~ 72 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILG---------------------------KSLADELALVDVLEDKLKGEMMDLQHGSLFL 72 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHH---------------------------TTCCSEEEEECSCHHHHHHHHHHHHHTGGGC
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------------------------cCCCcEEEEEEeccchhHHHHHHHhcccccc
Confidence 4699999999999999999999 454 89999999888753 22211100
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.......+.+++ .+++||+|+++.+.|..+..++.+ -..+...+++....|.+..+++.+++. |
T Consensus 73 ------------~~~~~~~~~d~~-~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivv--t 137 (160)
T d1i0za1 73 ------------QTPKIVADKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVV--S 137 (160)
T ss_dssp ------------CCSEEEECSSGG-GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC--S
T ss_pred ------------CCCeEEeccchh-hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe--C
Confidence 112344556664 799999999999888765432211 122345677777788887666665554 4
Q ss_pred CchHHH
Q psy11160 158 VPVRAA 163 (598)
Q Consensus 158 v~~~~~ 163 (598)
-|....
T Consensus 138 NPvDv~ 143 (160)
T d1i0za1 138 NPVDIL 143 (160)
T ss_dssp SSHHHH
T ss_pred CchHHH
Confidence 444443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.54 E-value=1.3e-07 Score=84.67 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=74.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.++|..++.+ +.--++.++|+++++.+.... ++.+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~-------------------------~~~~elvL~Di~~~~~~g~al--------Dl~~ 47 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN-------------------------LDVDEIALVDIAEDLAVGEAM--------DLAH 47 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-------------------------SCCSEEEEECSSHHHHHHHHH--------HHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhc-------------------------CcCceEEEEecccchhhHHHH--------HHhh
Confidence 7999999999999999999971 112489999999988654210 0111
Q ss_pred HHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 86 VVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
..... ...++..++|++ ++++||+|+++...|..++.++.+ -..+...+++..+.|.++. ++.++++ -|-|....
T Consensus 48 ~~~~~~~~~~i~~~~d~~-~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aiviv-vtNPvD~~ 124 (142)
T d1ojua1 48 AAAGIDKYPKIVGGADYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILV-VTNPMDVM 124 (142)
T ss_dssp HHHTTTCCCEEEEESCGG-GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEE-CSSSHHHH
T ss_pred hccccCCCCccccCCCHH-HhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEE-ecCChHHH
Confidence 11000 113467778885 899999999999888765432111 1112334444455555554 3444443 44466554
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.54 E-value=7.9e-08 Score=86.00 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=78.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.++|..++. ++...++.++|+++++.+....- +.+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~-------------------------~~l~~el~L~Di~~~~~~~~~~d--------~~~ 47 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAE-------------------------KQLARELVLLDVVEGIPQGKALD--------MYE 47 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-------------------------TTCCSEEEEECSSSSHHHHHHHH--------HHT
T ss_pred CEEEEECcCHHHHHHHHHHHh-------------------------CCCCceEEEeccccccchhhhhh--------hhc
Confidence 699999999999999999998 11225999999998876643210 000
Q ss_pred HHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 86 VVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.... .....+..+++++ ++++||+++++...|..+..++.+ -..+...+++..+.|.++.+ +.++++ -|-|.+..
T Consensus 48 ~~~~~~~~~~i~~~~~~~-~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aiviv-vtNPvd~~ 124 (142)
T d1guza1 48 SGPVGLFDTKVTGSNDYA-DTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIV-VSNPLDIM 124 (142)
T ss_dssp THHHHTCCCEEEEESCGG-GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEE-CCSSHHHH
T ss_pred ccchhcccceEEecCCHH-HhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEE-ecCChHHH
Confidence 0000 0123456667764 899999999999887765432111 12234456666677777764 444443 46677665
Q ss_pred HH
Q psy11160 164 ES 165 (598)
Q Consensus 164 ~~ 165 (598)
-.
T Consensus 125 ~~ 126 (142)
T d1guza1 125 TH 126 (142)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.52 E-value=4.8e-07 Score=79.81 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcccccc-------cc--ccCccccccchhhhHHH
Q psy11160 294 TWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAK-------FL--QASVGFGGSCFQKDILN 364 (598)
Q Consensus 294 ~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~~-------~l--~~~~gfgg~cl~KD~~~ 364 (598)
.++|+.+|+++|++.++++..+.|...+|++.|+|++.+++++...+-.++. ++ ++.|+|....+.||+.+
T Consensus 2 vG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~l 81 (133)
T d1vpda1 2 IGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLAN 81 (133)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999987532221 11 46789999999999999
Q ss_pred HHHHHHHcCCh
Q psy11160 365 LVYICECLNLP 375 (598)
Q Consensus 365 L~~~a~~~G~~ 375 (598)
..+.|++.|++
T Consensus 82 ~~~~a~~~~~~ 92 (133)
T d1vpda1 82 ALDTSHGVGAQ 92 (133)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999987
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.51 E-value=3.6e-07 Score=82.11 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=73.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+||+|||+|+||.++|..|+. ++-..+++++|+++++.+.... ++.+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~-------------------------~~~~~elvL~Di~~~~~~g~~~--------Dl~~ 48 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIA-------------------------QGVADDYVFIDANEAKVKADQI--------DFQD 48 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-------------------------HTCCSEEEEECSSHHHHHHHHH--------HHHH
T ss_pred CeEEEECcCHHHHHHHHHHHh-------------------------cCCCceEEEEecccchhhhHHH--------hhhc
Confidence 699999999999999999988 1123589999999998764321 1111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCC-CCCCC----cchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN-GKGRA----ADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~-~~~~~----~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
............+.|++ ++++||+||++.+.|....+. +.+|. .+.+.+++..+.|.++.++..+++ -|-|.
T Consensus 49 a~~~~~~~~~~~~~d~~-~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aiviv--vtNPv 125 (146)
T d1hyha1 49 AMANLEAHGNIVINDWA-ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV--ISNPV 125 (146)
T ss_dssp HGGGSSSCCEEEESCGG-GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEE--CSSSH
T ss_pred cccccCCccceeccCHH-HhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE--ecCcH
Confidence 11111112234566765 799999999998866522110 11121 234556677777776654444344 45566
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
...
T Consensus 126 D~~ 128 (146)
T d1hyha1 126 DVI 128 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=3e-07 Score=83.75 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=77.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH----HHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ----WNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~----~~~~~~~~~e~ 81 (598)
+||+|||+|.||.++|..|+. ++...++.++|+++++.+. ++......
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~-------------------------~~l~~elvL~D~~~~~a~g~alDl~~~~~~~--- 71 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILL-------------------------KGLADELALVDADTDKLRGEALDLQHGSLFL--- 71 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-------------------------TTSCSEEEEECSCHHHHHHHHHHHHHTTTTC---
T ss_pred CeEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEeCCchhhhccHHHHhCcchhc---
Confidence 689999999999999999998 1223489999999887653 33221110
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.......+.|++ ++++||+|+++.+.|..++.++.+ -..+.+.+++....|.+..+++.+++. |-|.
T Consensus 72 ---------~~~~~~~~~d~~-~~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivv--tNPv 139 (159)
T d2ldxa1 72 ---------STPKIVFGKDYN-VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVV--TNPV 139 (159)
T ss_dssp ---------SCCEEEEESSGG-GGTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEEC--SSSH
T ss_pred ---------CCCeEEeccchh-hhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEe--CCcH
Confidence 012345566775 789999999999888876544322 223455666666667776555554443 3455
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
...
T Consensus 140 Dv~ 142 (159)
T d2ldxa1 140 DIL 142 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.44 E-value=2.5e-07 Score=82.92 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=77.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCC-CCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKL-PIYEP 81 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~-~~~e~ 81 (598)
+||+|||+ |.||.++|..|+. .| -+++++|+++.+.+.+--... .+.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~---------------------------~~~~~elvLiDi~~~~~~a~Dl~~~~~~~-- 51 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKN---------------------------SPLVSRLTLYDIAHTPGVAADLSHIETRA-- 51 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHT---------------------------CTTCSEEEEEESSSHHHHHHHHTTSSSSC--
T ss_pred CeEEEECCCChHHHHHHHHHHh---------------------------CCccceEEEEeccccchhhHHHhhhhhhc--
Confidence 58999995 9999999999998 34 489999998776554331111 010
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.........+..+++++||+||++...|.++..++.+ -..+.+.+++..+.|.++.++..+++ .|-|.
T Consensus 52 ---------~~~~~~~~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiiv--vtNPv 120 (144)
T d1mlda1 52 ---------TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI--ISNPV 120 (144)
T ss_dssp ---------EEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE--CSSCH
T ss_pred ---------CCCeEEcCCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEE--ecCch
Confidence 0011223456667899999999999888776543222 23346677778888888855544555 35555
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
.+.
T Consensus 121 D~~ 123 (144)
T d1mlda1 121 NST 123 (144)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.39 E-value=8.1e-07 Score=79.62 Aligned_cols=123 Identities=24% Similarity=0.368 Sum_probs=75.4
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHH--HHHHHHcCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEE--RIRQWNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~--~~~~~~~~~~~~~e 80 (598)
|||+|||+ |.||.++|..++. .| .++.++|+++. +.+.+..
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~---------------------------~~l~~el~L~D~~~~~~~~~g~a~------- 46 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAK---------------------------EPFMKDLVLIGREHSINKLEGLRE------- 46 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHT---------------------------CTTCCEEEEEECGGGHHHHHHHHH-------
T ss_pred CEEEEECCCChHHHHHHHHHHh---------------------------CCcccccccccchhhhHhhhcccc-------
Confidence 69999995 9999999999988 45 49999999853 3332211
Q ss_pred CChHHHHhhhc-CCceE--EecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 81 PGLDEVVKKTR-DVNLF--FSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 81 ~~~~~~~~~~~-~~~~~--~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
++.+...... ..+.+ .+.++ +++++||+||++.+.|.+++.++.+ -..+.+.+++..+.|.++. ++.++|+
T Consensus 47 -Dl~~~~~~~~~~~~~~~~~~~d~-~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~-~~~iivV-- 121 (145)
T d1hyea1 47 -DIYDALAGTRSDANIYVESDENL-RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVI-- 121 (145)
T ss_dssp -HHHHHHTTSCCCCEEEEEETTCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEC--
T ss_pred -cchhcccccccCCccccCCcchH-HHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC-CCeEEEE--
Confidence 0111111000 12233 23355 4899999999999888766542111 1223455677777887775 4555554
Q ss_pred CCchHHHHHHH
Q psy11160 157 TVPVRAAESIM 167 (598)
Q Consensus 157 Tv~~~~~~~~~ 167 (598)
|-|....-.++
T Consensus 122 tNPvD~mt~~~ 132 (145)
T d1hyea1 122 TNPVDVMTYKA 132 (145)
T ss_dssp SSSHHHHHHHH
T ss_pred cCchHHHHHHH
Confidence 67776554433
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.33 E-value=1.7e-06 Score=76.26 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccccc--------------ccc--ccCccccccc
Q psy11160 294 TWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGA--------------KFL--QASVGFGGSC 357 (598)
Q Consensus 294 ~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~--------------~~l--~~~~gfgg~c 357 (598)
.+++..+|+++|.+....+..+.|+..++++.|+|++.++++++..+--++ .+. ++.++|....
T Consensus 2 ~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l 81 (134)
T d3cuma1 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQL 81 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHH
Confidence 478999999999999999999999999999999999999999997652111 111 4677899999
Q ss_pred hhhhHHHHHHHHHHcCCh
Q psy11160 358 FQKDILNLVYICECLNLP 375 (598)
Q Consensus 358 l~KD~~~L~~~a~~~G~~ 375 (598)
+.||++...+.+++.|++
T Consensus 82 ~~KDl~l~~~~a~~~g~~ 99 (134)
T d3cuma1 82 MAKDLGLAQEAAQASASS 99 (134)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999987
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=1.2e-06 Score=77.11 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcccccc--------cc--ccCccccccchhhhHH
Q psy11160 294 TWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAK--------FL--QASVGFGGSCFQKDIL 363 (598)
Q Consensus 294 ~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~~--------~l--~~~~gfgg~cl~KD~~ 363 (598)
.++|+.+|+++|++...++..+.|...++++.|+|+..++++++.++--++. .. ++.++|....+.||++
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~ 80 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG 80 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence 3679999999999999999999999999999999999999999876532211 11 4667899999999999
Q ss_pred HHHHHHHHcCCh
Q psy11160 364 NLVYICECLNLP 375 (598)
Q Consensus 364 ~L~~~a~~~G~~ 375 (598)
+..+.|++.|++
T Consensus 81 l~~~~a~~~g~~ 92 (132)
T d2cvza1 81 IAMGVLDGEKAP 92 (132)
T ss_dssp HHHHHHTTTCCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999987
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.30 E-value=5.5e-07 Score=80.46 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=67.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH----HHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ----WNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~----~~~~~~~~~e~ 81 (598)
+||+|||+|.||.++|..++. ++...++.++|+++++.+. ++.. .++.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~-------------------------~~l~~el~L~D~~~~~~~g~a~Dl~~~-~~~~-- 53 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMAL-------------------------RQTANELVLIDVFKEKAIGEAMDINHG-LPFM-- 53 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-------------------------TTCSSEEEEECCC---CCHHHHHHTTS-CCCT--
T ss_pred CeEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEeccCCccceeeeeeccC-cccC--
Confidence 599999999999999999998 1123489999999886432 2221 1111
Q ss_pred ChHHHHhhhcCCceE-EecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 82 GLDEVVKKTRDVNLF-FSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.... .+.++ +++++||+|+++...+..+..++.+ -..+...+++..+.|.++.++..+++ -|-|
T Consensus 54 -----------~~~~~~~~~~-~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~iv--vtNP 119 (142)
T d1y6ja1 54 -----------GQMSLYAGDY-SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV--VSNP 119 (142)
T ss_dssp -----------TCEEEC--CG-GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEE--CSSS
T ss_pred -----------CCeeEeeCcH-HHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEE--ecCh
Confidence 1122 23455 4799999999998777654332111 11234556666677777665554444 4667
Q ss_pred hHHHHH
Q psy11160 160 VRAAES 165 (598)
Q Consensus 160 ~~~~~~ 165 (598)
....-.
T Consensus 120 vdv~t~ 125 (142)
T d1y6ja1 120 VDIITY 125 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665433
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=1.6e-06 Score=77.60 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=75.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH---HHHcCCCCCCCC
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR---QWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~---~~~~~~~~~~e~ 81 (598)
|||+||| .|.||.++|..|+.+ .+.+.++.++|+.+.... .++....+..
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~------------------------~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~-- 54 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQ------------------------LPSGSELSLYDIAPVTPGVAVDLSHIPTAVK-- 54 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------------------------SCTTCEEEEECSSTTHHHHHHHHHTSCSSCE--
T ss_pred CEEEEEcCCChHHHHHHHHHHhC------------------------CCCCcEEEEecccccchhHHHHHHCCccccC--
Confidence 6999999 599999999988751 013579999998753211 2332211110
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
......++++ +++++||+||++...|.++..++.+ -..+.+.+++..+.|.++.++..+++. |-|.
T Consensus 55 ----------~~~~~~~~~~-~~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivv--tNPv 121 (145)
T d2cmda1 55 ----------IKGFSGEDAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII--TNPV 121 (145)
T ss_dssp ----------EEEECSSCCH-HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSSH
T ss_pred ----------CcEEEcCCCc-cccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEc--cCCc
Confidence 0111123455 4899999999999888776543322 223456778888888888866655554 4555
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
.+.
T Consensus 122 D~m 124 (145)
T d2cmda1 122 NTT 124 (145)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.21 E-value=2.2e-06 Score=77.09 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=76.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||+|||+|.||.++|..++. .+ -++.++|+++++.+....- +
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~---------------------------~~l~el~L~Di~~~~~~g~a~D--------l 47 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQ---------------------------KNLGDVVLFDIVKNMPHGKALD--------T 47 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECSSSSHHHHHHHH--------H
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEeccCCcceeeecc--------h
Confidence 4699999999999999988877 23 3899999998876654311 0
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCc-----chHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAA-----DLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~-----~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
....... .......+.+++ ++++||+|+++...|..+..++.. ... +...+++..+.|.++.+ +.++++ -
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~-~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aiviv-v 124 (150)
T d1t2da1 48 SHTNVMAYSNCKVSGSNTYD-DLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIV-V 124 (150)
T ss_dssp HTHHHHHTCCCCEEEECCGG-GGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-C
T ss_pred hhhccccCCCcEEEeccccc-ccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEE-e
Confidence 0000000 123455556664 789999999999877655332111 122 34466667777777764 444443 5
Q ss_pred CCchHHH
Q psy11160 157 TVPVRAA 163 (598)
Q Consensus 157 Tv~~~~~ 163 (598)
|-|.+..
T Consensus 125 tNPvD~~ 131 (150)
T d1t2da1 125 TNPVDVM 131 (150)
T ss_dssp SSSHHHH
T ss_pred cCchHHH
Confidence 6666654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.10 E-value=3.8e-06 Score=75.75 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=80.6
Q ss_pred CCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEE--eCCHHHHHHHHc--CCC
Q psy11160 2 VQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV--DKSEERIRQWNS--NKL 76 (598)
Q Consensus 2 ~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~--d~~~~~~~~~~~--~~~ 76 (598)
|++-+||+|||+ |.||.++|..|+.+ .+++.. ..+...++ +.+.++.+.+.. ...
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~-------------------~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 60 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAG-------------------EMLGKD-QPVILQLLEIPQAMKALEGVVMELEDC 60 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTT-------------------TTTCTT-CCEEEEEECCGGGHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhc-------------------cccccc-cchhHhHhccccchhhHcCchhhhhcc
Confidence 455679999997 99999999999981 111110 12333333 445555554321 000
Q ss_pred CCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 77 PIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 77 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.. ........+++..+++++||+||++-..|.++..++.+ ...+...+++....|.++.+++.+|++-
T Consensus 61 ~~-----------~~~~~~~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivv 129 (154)
T d1y7ta1 61 AF-----------PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVV 129 (154)
T ss_dssp TC-----------TTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred cc-----------ccccccccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 00 00134667777778999999999998877765432111 1224567777788888888877766554
Q ss_pred cCCchHHHHHHH
Q psy11160 156 STVPVRAAESIM 167 (598)
Q Consensus 156 STv~~~~~~~~~ 167 (598)
|. |....-.++
T Consensus 130 sN-PvDv~t~~a 140 (154)
T d1y7ta1 130 GN-PANTNALIA 140 (154)
T ss_dssp SS-SHHHHHHHH
T ss_pred cC-cHHHHHHHH
Confidence 43 666654443
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=8.8e-06 Score=74.64 Aligned_cols=126 Identities=21% Similarity=0.230 Sum_probs=77.6
Q ss_pred CceEEEECCChhHHHHHHH--HHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSV--IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~--la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.|||+|||+|.+|.+++.. ++. .+. + .+.+++++|+++++++....-
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~-~~~--------------------l--~~~eivL~Did~~~~~~~~~~-------- 50 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCK-TPG--------------------L--SGSTVTLMDIDEERLDAILTI-------- 50 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHT-CGG--------------------G--TTCEEEEECSCHHHHHHHHHH--------
T ss_pred CcEEEEECCCHHHhHHHHHHHHHh-ccc--------------------c--CCCEEEEEeCCchHHHHHHHH--------
Confidence 4799999999999876542 333 000 1 456999999999998753310
Q ss_pred hHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCC------------------CCCC-----CC----CCcchHH
Q psy11160 83 LDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKT------------------FGNG-----KG----RAADLKY 134 (598)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~------------------~~~~-----~~----~~~~~~~ 134 (598)
+...... ....++..++|+.+++++||+|++++..+..+ .++. .+ ...+...
T Consensus 51 ~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i 130 (171)
T d1obba1 51 AKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKY 130 (171)
T ss_dssp HHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHH
T ss_pred HHHHHHhcCCCeEEEEeCChhhcccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHH
Confidence 1111111 11346888999999999999999987543211 0000 00 0125567
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 135 VEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 135 ~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
++++++.|.++.++ .++++ -|-|.+..
T Consensus 131 ~~~i~~~i~~~~p~-a~~i~-~TNPvdv~ 157 (171)
T d1obba1 131 FVDIARKIEKLSPK-AWYLQ-AANPIFEG 157 (171)
T ss_dssp HHHHHHHHHHHCTT-CEEEE-CSSCHHHH
T ss_pred HHHHHHHHHHHCcC-eEEEE-ECChHHHH
Confidence 78888888887754 44333 45565553
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.03 E-value=1.2e-05 Score=70.01 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=38.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
|||.|+|+|.+|..+|..|.+ .|++|+++|.|+++++.+..
T Consensus 1 M~IvI~G~G~~G~~la~~L~~---------------------------~g~~v~vid~d~~~~~~~~~ 41 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSE---------------------------KGHDIVLIDIDKDICKKASA 41 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCCcceecCChhhhhhhhh
Confidence 799999999999999999999 89999999999999998864
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.02 E-value=1.8e-05 Score=68.77 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=63.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+++.|+|+|.+|..+|..|.+ .|++|+++|.|+++++.+.+...+..-
T Consensus 1 k~~iIiG~G~~G~~la~~L~~---------------------------~g~~vvvid~d~~~~~~~~~~~~~~~~----- 48 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHR---------------------------MGHEVLAVDINEEKVNAYASYATHAVI----- 48 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHH---------------------------TTCCCEEEESCHHHHHHTTTTCSEEEE-----
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEecCcHHHHHHHHHhCCccee-----
Confidence 378999999999999999999 899999999999999998743221100
Q ss_pred HHhhhcCCceEEecCHHHH-hccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 86 VVKKTRDVNLFFSTDIKSA-IQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
+..+-...+.++ +.+||.+|++++... .....+..+.+..+...+++-
T Consensus 49 -------gd~~~~~~l~~a~i~~a~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 49 -------ANATEENELLSLGIRNFEYVIVAIGANI--------------QASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp -------CCTTCTTHHHHHTGGGCSEEEECCCSCH--------------HHHHHHHHHHHHTTCSEEEEE
T ss_pred -------eecccchhhhccCCccccEEEEEcCchH--------------HhHHHHHHHHHHcCCCcEEee
Confidence 000001112333 789999999975432 123334455566655555543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.99 E-value=2.2e-06 Score=77.55 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=53.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|.|||+|.||.++|..|++ +||+|+++|+|.++++.+.+.........
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~---------------------------~g~~V~v~dr~~~~a~~l~~~~~~~~~~~-- 52 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTD---------------------------SGIKVTVACRTLESAKKLSAGVQHSTPIS-- 52 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT---------------------------TTCEEEEEESCHHHHHHHHTTCTTEEEEE--
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEECChHHHHHHHhccccccccc--
Confidence 3689999999999999999999 89999999999999999986432110000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..........+.+...|+++.++|
T Consensus 53 --------~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 53 --------LDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp --------CCTTCHHHHHHHHTTSSEEEECSC
T ss_pred --------ccccchhhhHhhhhccceeEeecc
Confidence 000011223456788899888754
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.97 E-value=3.4e-05 Score=70.34 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=57.8
Q ss_pred CCceEEEECCChhHHHHHH-HHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCS-VIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+..||+|||+|.+|.+.+. .+....+.+ ++-+++++|+++++++.... .
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l----------------------~~~eivL~Did~~~~~~~~~--------~ 51 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEF----------------------PIRKLKLYDNDKERQDRIAG--------A 51 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTS----------------------CEEEEEEECSCHHHHHHHHH--------H
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhc----------------------CCCEEEEEcCChhHHHHHHH--------H
Confidence 4679999999999987543 333311111 34599999999999874331 0
Q ss_pred hHHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 83 LDEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
++...... .+.++..++|..+++++||+||++...+.
T Consensus 52 ~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvitag~~~ 89 (167)
T d1u8xx1 52 CDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGK 89 (167)
T ss_dssp HHHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCTTH
T ss_pred HHHHHHHhCCCcceEecCChhhccCCCCEEEECCCcCC
Confidence 11111111 23467889999999999999999987654
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.91 E-value=3.2e-05 Score=71.01 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=82.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH--HHHHHH----cCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE--RIRQWN----SNKLP 77 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~~~~----~~~~~ 77 (598)
..||+|+|+ |.+|.+++..|+. ..+.|.. ...++.++|+++. .++.+. ..-.+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~-------------------g~v~g~~-~~i~L~L~di~~~~~~l~g~~mdl~d~a~~ 83 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLAS-------------------GEVFGQD-QPIALKLLGSERSFQALEGVAMELEDSLYP 83 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH-------------------TTTTCTT-CCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred CcEEEEECCCcHHHHHHHHHHHc-------------------CcccCCC-ceEEEEEecCccccchhcchhhhhcccccc
Confidence 358999996 9999999999998 1121111 2247777887653 333222 11111
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
. ......+++..++++++|+||++-..|.++..++.+ ...+...+++..+.|.++.+++.+|+.-|
T Consensus 84 ~-------------~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 84 L-------------LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp T-------------EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred c-------------ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 0 134667888888999999999998888766543211 12234567777788888888777665544
Q ss_pred CCchHHHHHHHH
Q psy11160 157 TVPVRAAESIMN 168 (598)
Q Consensus 157 Tv~~~~~~~~~~ 168 (598)
. |..+.-.++.
T Consensus 151 N-Pvd~~t~ia~ 161 (175)
T d7mdha1 151 N-PCNTNALICL 161 (175)
T ss_dssp S-SHHHHHHHHH
T ss_pred C-cHHHHHHHHH
Confidence 4 7766655543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.89 E-value=3.5e-05 Score=69.13 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=79.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH--HHHHHH----cCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE--RIRQWN----SNKLP 77 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~~~~----~~~~~ 77 (598)
-+||+|||+ |.+|.++|..|+. +.+.+.. .-.++..+|+++. +.+.+. ....+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~-------------------~~~~~~~-~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~ 62 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGN-------------------GSVFGKD-QPIILVLLDITPMMGVLDGVLMELQDCALP 62 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHT-------------------TTTTCTT-CCEEEEEECCGGGHHHHHHHHHHHHHTCCT
T ss_pred ceEEEEECCCCHHHHHHHHHHHH-------------------HHhcCCC-CccEEEEecCccchhhhhhhhhhhcccccc
Confidence 479999995 9999999999987 1111110 1247888887653 333321 11111
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.......+++..++++++|+||++-..|..+..++.+ ...+...+++....|.++.++..++++ -
T Consensus 63 -------------~~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iiv-v 128 (154)
T d5mdha1 63 -------------LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIV-V 128 (154)
T ss_dssp -------------TEEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-C
T ss_pred -------------cccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEE-e
Confidence 0134566778888999999999999888776544322 233346677777778777776664443 2
Q ss_pred CCchHHHHHH
Q psy11160 157 TVPVRAAESI 166 (598)
Q Consensus 157 Tv~~~~~~~~ 166 (598)
|-|....-.+
T Consensus 129 sNPvD~mt~v 138 (154)
T d5mdha1 129 GNPANTNCLT 138 (154)
T ss_dssp SSSHHHHHHH
T ss_pred cCcHHHHHHH
Confidence 4466555333
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.89 E-value=2.6e-05 Score=69.27 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=70.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC--HHHHH----HHHcCCCCC
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS--EERIR----QWNSNKLPI 78 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~--~~~~~----~~~~~~~~~ 78 (598)
+||+||| .|.+|.++|..++. ++..-++.++|++ +++.+ .++... ++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~-------------------------~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~-~~ 54 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIAL-------------------------RDIADEVVFVDIPDKEDDTVGQAADTNHGI-AY 54 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-------------------------TTCCSEEEEECCGGGHHHHHHHHHHHHHHH-TT
T ss_pred CeEEEECCCCcHHHHHHHHHHh-------------------------CCCCCEEEEEecCCcccccceeecchhhcc-cc
Confidence 5899999 69999999999998 1122489999975 33332 122110 00
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.....+ .+.+++ ++++||+|+++...|.++..++.+ -..+.+.+++..+.|.++.+++.+++. |
T Consensus 55 -----------~~~~~i-~~~~~~-~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivv--t 119 (142)
T d1o6za1 55 -----------DSNTRV-RQGGYE-DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTT--S 119 (142)
T ss_dssp -----------TCCCEE-EECCGG-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEC--C
T ss_pred -----------cCCceE-eeCCHH-HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEe--c
Confidence 001222 345665 689999999998877765432111 112345666667777776655555554 4
Q ss_pred CchHH
Q psy11160 158 VPVRA 162 (598)
Q Consensus 158 v~~~~ 162 (598)
-|...
T Consensus 120 NPvDv 124 (142)
T d1o6za1 120 NPVDL 124 (142)
T ss_dssp SSHHH
T ss_pred ChHHH
Confidence 45543
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.87 E-value=0.00011 Score=66.33 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=55.8
Q ss_pred ceEEEECCChhHHHHHHH-HHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|.+|.+.+.. ++.+-..+ ++.++.++|+++++.+....
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~----------------------~~~el~L~Did~~k~~~~~d----------- 47 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDV----------------------RIDEVIFYDIDEEKQKIVVD----------- 47 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTS----------------------CCCEEEEECSCHHHHHHHHH-----------
T ss_pred CEEEEECCCHHHHHHHHHHHHhccccc----------------------CccEEEEEecCcHHHHHHHH-----------
Confidence 699999999999888854 33310000 35699999999999875331
Q ss_pred HHHhhh--cCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 85 EVVKKT--RDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
+.... .......+++..+++++||+||++...+.
T Consensus 48 -~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~~~~ 83 (162)
T d1up7a1 48 -FVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGG 83 (162)
T ss_dssp -HHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCTTH
T ss_pred -HHHhhhccCceEEEecCcccccCCCCEEEEecccCC
Confidence 11111 12356778888899999999999986653
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.82 E-value=4.8e-06 Score=78.28 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=55.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHhc---CCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCC
Q psy11160 180 FQGRAADLKYVEAAARMIAEIAT---DNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNA 256 (598)
Q Consensus 180 ~~~~~~dl~~l~~A~~~Ia~~l~---~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p 256 (598)
...+.+|+++++++.+.+...++ ++.+||++||||||||+ +++.+.++. -.....|..++..++|
T Consensus 89 ~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~---~~~~~~l~~---------~~~~~~~~~~~~~~~P 156 (202)
T d1mv8a2 89 KKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVN---NVVIPLIED---------CSGKKAGVDFGVGTNP 156 (202)
T ss_dssp CTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHH---HTHHHHHHH---------HHSCCBTTTBEEEECC
T ss_pred cccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchh---hhhhhhhhc---------cccccccccccchhhh
Confidence 45678999999999999887766 67899999999999998 455553321 1122456678889999
Q ss_pred CEEEEcc
Q psy11160 257 DRILIGG 263 (598)
Q Consensus 257 ~rv~vGg 263 (598)
||+..|.
T Consensus 157 E~~~~G~ 163 (202)
T d1mv8a2 157 EFLREST 163 (202)
T ss_dssp CCCCTTS
T ss_pred hhhcccc
Confidence 9998873
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.79 E-value=1.1e-05 Score=73.01 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=38.5
Q ss_pred ceEEEE-CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCI-GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~vi-G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
|||+|| |+|.||..+|..|++ +||+|++|+|++++++.+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~---------------------------~G~~V~l~~R~~e~~~~l~~ 42 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLAT---------------------------LGHEIVVGSRREEKAEAKAA 42 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHT---------------------------TTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHH
Confidence 699999 899999999999999 89999999999999988774
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.77 E-value=6e-05 Score=68.02 Aligned_cols=72 Identities=13% Similarity=0.235 Sum_probs=56.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|.|||+|-||..++..|.. .|. +++++.|+.++.+.+.+..
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~---------------------------~g~~~i~v~nRt~~ka~~l~~~~-------- 68 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVD---------------------------RGVRAVLVANRTYERAVELARDL-------- 68 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHH---------------------------HCCSEEEEECSSHHHHHHHHHHH--------
T ss_pred cCeEEEECCCHHHHHHHHHHHh---------------------------cCCcEEEEEcCcHHHHHHHHHhh--------
Confidence 4689999999999999999999 675 7999999999998877421
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
+.......+..+.+.++|+||.|++.|.
T Consensus 69 --------~~~~~~~~~~~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 69 --------GGEAVRFDELVDHLARSDVVVSATAAPH 96 (159)
T ss_dssp --------TCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred --------hcccccchhHHHHhccCCEEEEecCCCC
Confidence 0111122456678999999999987663
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.64 E-value=6e-05 Score=70.24 Aligned_cols=95 Identities=9% Similarity=0.077 Sum_probs=67.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|.+||+....-..-.
T Consensus 50 ktvgIiG~G~IG~~va~~l~~---------------------------fg~~v~~~d~~~~~~~~~~------------- 89 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKA---------------------------FGFNVLFYDPYLSDGVERA------------- 89 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECTTSCTTHHHH-------------
T ss_pred ceEEEeccccccccceeeeec---------------------------cccceeeccCcccccchhh-------------
Confidence 689999999999999999988 6899999998533211111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.+.....++++.++.||+|++++|-...+.+ ..+ +.....++++.++|+.|--..
T Consensus 90 -------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~sRG~i 144 (193)
T d1mx3a1 90 -------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH-----LIN--------DFTVKQMRQGAFLVNTARGGL 144 (193)
T ss_dssp -------HTCEECSSHHHHHHHCSEEEECCCCCTTCTT-----SBS--------HHHHTTSCTTEEEEECSCTTS
T ss_pred -------hccccccchhhccccCCEEEEeecccccchh-----hhh--------HHHHhccCCCCeEEecCCceE
Confidence 1244567888899999999999875433221 222 234567899999998665433
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.59 E-value=5.8e-05 Score=68.45 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=75.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||.|||+|.+|+.-+..... .|-+|+++|+++++.+++++-
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~---------------------------lGA~V~~~D~~~~~l~~l~~~----------- 74 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVG---------------------------LGAQVQIFDINVERLSYLETL----------- 74 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHH-----------
T ss_pred cEEEEECCChHHHHHHHHHhh---------------------------CCCEEEEEeCcHHHHHHHHHh-----------
Confidence 589999999999999988888 799999999999999988742
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
..............+++.+++||+||-++--|-.+ .|-+ +.+...+.++++.+||+-|.=.-|.
T Consensus 75 -~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~-------aP~l-----It~~mv~~Mk~GSVIVDvaidqGG~ 138 (168)
T d1pjca1 75 -FGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQGGC 138 (168)
T ss_dssp -HGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTTCCS
T ss_pred -hcccceeehhhhhhHHHhhccCcEEEEeeecCCcc-------cCee-----ecHHHHhhcCCCcEEEEeecCCCCc
Confidence 11100000111123567899999999998766432 2222 2356677899999999977655443
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.58 E-value=8.6e-05 Score=68.43 Aligned_cols=90 Identities=13% Similarity=0.229 Sum_probs=65.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|++||+++. ++
T Consensus 43 k~vgIiG~G~IG~~va~~l~~---------------------------~g~~v~~~d~~~~------~~----------- 78 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAA---------------------------LGAQVRGFSRTPK------EG----------- 78 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHH---------------------------TTCEEEEECSSCC------CS-----------
T ss_pred ceEEEeccccccccceeeeec---------------------------ccccccccccccc------cc-----------
Confidence 689999999999999999988 7899999998632 11
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
......++++.+++||+|++++|-...+. ...+ +...+.++++.++|+.|-...
T Consensus 79 --------~~~~~~~l~ell~~sDiv~~~~pl~~~t~-----~li~--------~~~l~~mk~~ailIN~~RG~i 132 (181)
T d1qp8a1 79 --------PWRFTNSLEEALREARAAVCALPLNKHTR-----GLVK--------YQHLALMAEDAVFVNVGRAEV 132 (181)
T ss_dssp --------SSCCBSCSHHHHTTCSEEEECCCCSTTTT-----TCBC--------HHHHTTSCTTCEEEECSCGGG
T ss_pred --------ceeeeechhhhhhccchhhcccccccccc-----cccc--------cceeeeccccceEEecccccc
Confidence 01223567889999999999986432211 1222 355677899999998775433
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.54 E-value=4.3e-05 Score=69.69 Aligned_cols=125 Identities=15% Similarity=0.192 Sum_probs=72.0
Q ss_pred ceEEEECCChhHHH--HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHHHHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGP--TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~--~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~~~~~~~~~e~ 81 (598)
|||+|||+|.+|.+ ++..+.. -+.+ +.-+++++|+++++ .+.+..-
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~-~~~~----------------------~~~eI~L~Di~e~~~~~~~~d~~------- 51 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKR-YHEL----------------------PVGELWLVDIPEGKEKLEIVGAL------- 51 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHT-TTTC----------------------CEEEEEEECCGGGHHHHHHHHHH-------
T ss_pred cEEEEECCChhhHHHHHHHHHHh-cccc----------------------CCCEEEEEcCCccHHHHHHHHHH-------
Confidence 79999999988754 4444444 0000 23599999998855 3332210
Q ss_pred ChHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC---------------------CCcchHHHHHHH
Q psy11160 82 GLDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG---------------------RAADLKYVEAAA 139 (598)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~---------------------~~~~~~~~~~~~ 139 (598)
....... ....+...++|..+++++||+||++.+.+..+..++.+ ...++..+++++
T Consensus 52 -~~~~~~~~~~~~~~~~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~ 130 (169)
T d1s6ya1 52 -AKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDII 130 (169)
T ss_dssp -HHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhcCCCceeeecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHH
Confidence 0000111 12346778999999999999999998765321100000 012445577788
Q ss_pred HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 140 RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 140 ~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+.|.++. |+.++++ -|-|....
T Consensus 131 ~~i~~~~-pda~~i~-vtNPvdv~ 152 (169)
T d1s6ya1 131 RDMEELC-PDAWLIN-FTNPAGMV 152 (169)
T ss_dssp HHHHHHC-TTCEEEE-CSSSHHHH
T ss_pred HHHhhcC-CCeEEEE-eCChHHHH
Confidence 8888876 4454444 45565543
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.46 E-value=0.00038 Score=63.52 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=64.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+||+|||+|.+|...+..+... .+++|+ ++|+++++.+.+.+...
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~--------------------------~~~~i~ai~d~~~~~~~~~~~~~~-------- 47 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA--------------------------PNATISGVASRSLEKAKAFATANN-------- 47 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC--------------------------TTEEEEEEECSSHHHHHHHHHHTT--------
T ss_pred eEEEEEcCCHHHHHHHHHHHhC--------------------------CCCEEEEEEeCCccccccchhccc--------
Confidence 6899999999999988888761 467777 56999999887653210
Q ss_pred HHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.....++.+|+++.++ +.|+|+||+|+... .+.+...+..++-|+.+-.+
T Consensus 48 ------~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h------------------~~~~~~~l~~g~~v~~EKP~ 99 (184)
T d1ydwa1 48 ------YPESTKIHGSYESLLEDPEIDALYVPLPTSLH------------------VEWAIKAAEKGKHILLEKPV 99 (184)
T ss_dssp ------CCTTCEEESSHHHHHHCTTCCEEEECCCGGGH------------------HHHHHHHHTTTCEEEECSSC
T ss_pred ------cccceeecCcHHHhhhccccceeeecccchhh------------------cchhhhhhhccceeeccccc
Confidence 0123457788988774 57899999765431 23344456667766665544
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.45 E-value=0.00015 Score=67.65 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=64.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|.+||+....... ..+
T Consensus 44 k~vgIiG~G~IG~~va~~l~~---------------------------fg~~V~~~d~~~~~~~~-~~~----------- 84 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEG---------------------------FGAKVITYDIFRNPELE-KKG----------- 84 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCHHHH-HTT-----------
T ss_pred CeEEEecccccchhHHHhHhh---------------------------hcccccccCcccccccc-cce-----------
Confidence 689999999999999999988 68999999976443221 111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
. ...++++.+++||+|++++|--..+. +..+ +.....++++.++|+.|--.
T Consensus 85 ---------~-~~~~l~~~l~~sDii~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ 135 (197)
T d1j4aa1 85 ---------Y-YVDSLDDLYKQADVISLHVPDVPANV-----HMIN--------DESIAKMKQDVVIVNVSRGP 135 (197)
T ss_dssp ---------C-BCSCHHHHHHHCSEEEECSCCCGGGT-----TCBS--------HHHHHHSCTTEEEEECSCGG
T ss_pred ---------e-eeccccccccccccccccCCcccccc-----cccc--------HHHHhhhCCccEEEecCchh
Confidence 1 12467788999999999987432221 1222 23446789999999865443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=8.2e-05 Score=66.93 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=49.3
Q ss_pred ceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.+|.. ....+.. ..+++++ ++|+++++.+.+.+..
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~--------------------------~~~~~i~~v~d~~~~~~~~~~~~~-------- 47 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAA--------------------------ASDWTLQGAWSPTRAKALPICESW-------- 47 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHS--------------------------CSSEEEEEEECSSCTTHHHHHHHH--------
T ss_pred CEEEEEcCCHHHHHHHHHHHHh--------------------------CCCcEEEEEEechhHhhhhhhhcc--------
Confidence 68999999999986 4555554 0466765 6799988887765320
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+....+++++.+++.|+|+||+|+.
T Consensus 48 ----------~~~~~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 48 ----------RIPYADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp ----------TCCBCSSHHHHHTTCSEEEECSCTT
T ss_pred ----------cccccccchhhhhhcccccccccch
Confidence 1234567777788999999997654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.44 E-value=0.00014 Score=67.19 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=68.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. -|.+|.+||+....-.....
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~---------------------------fg~~v~~~d~~~~~~~~~~~----------- 85 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAP---------------------------FDVHLHYTDRHRLPESVEKE----------- 85 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG---------------------------GTCEEEEECSSCCCHHHHHH-----------
T ss_pred ccceeeccccccchhhhhhhhc---------------------------cCceEEEEeecccccccccc-----------
Confidence 3689999999999999999887 68899999985322221111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.+.....++.+.+++||+|++++|-...+.+ ..+ +...+.++++.++|+.|--..
T Consensus 86 --------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lIN~aRG~i 140 (188)
T d2naca1 86 --------LNLTWHATREDMYPVCDVVTLNCPLHPETEH-----MIN--------DETLKLFKRGAYIVNTARGKL 140 (188)
T ss_dssp --------HTCEECSSHHHHGGGCSEEEECSCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGG
T ss_pred --------ccccccCCHHHHHHhccchhhcccccccchh-----hhH--------HHHHHhCCCCCEEEecCchhh
Confidence 1234567788899999999999875433221 222 345567899999998665433
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=7.8e-05 Score=69.31 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=53.8
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.++||+|+| .|++|..++..|.+ +||+|++++|++++..........+..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~---------------------------~g~~V~~~~R~~~~~~~~~~~~~~~~~-- 52 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQ---------------------------AGYEVTVLVRDSSRLPSEGPRPAHVVV-- 52 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCGGGSCSSSCCCSEEEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---------------------------CcCEEEEEEcChhhccccccccccccc--
Confidence 357999999 59999999999999 899999999998886543321111111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
..+.-..++.++++++|+||.+++..
T Consensus 53 ----------gD~~d~~~l~~al~~~d~vi~~~g~~ 78 (205)
T d1hdoa_ 53 ----------GDVLQAADVDKTVAGQDAVIVLLGTR 78 (205)
T ss_dssp ----------SCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred ----------ccccchhhHHHHhcCCCEEEEEeccC
Confidence 11111234567899999999998654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.41 E-value=0.00019 Score=66.66 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=67.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|.+||+..........
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~---------------------------fg~~v~~~d~~~~~~~~~~~------------ 88 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQG---------------------------FDMDIDYFDTHRASSSDEAS------------ 88 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECSSCCCHHHHHH------------
T ss_pred cceEEeecccchHHHHHHHHh---------------------------hccccccccccccccchhhc------------
Confidence 689999999999999998887 68999999986432222111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.......++++.++.||+|++++|-...+.+ ..+ +.....++++.++|+.|--..
T Consensus 89 -------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~sRG~i 143 (191)
T d1gdha1 89 -------YQATFHDSLDSLLSVSQFFSLNAPSTPETRY-----FFN--------KATIKSLPQGAIVVNTARGDL 143 (191)
T ss_dssp -------HTCEECSSHHHHHHHCSEEEECCCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGG
T ss_pred -------ccccccCCHHHHHhhCCeEEecCCCCchHhh-----eec--------HHHhhCcCCccEEEecCCccc
Confidence 0123456788899999999999875432211 222 345567899999998665443
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.40 E-value=0.00015 Score=65.79 Aligned_cols=85 Identities=14% Similarity=0.252 Sum_probs=56.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||+|||+|+||...+..+.. . .+++++ ++|++++...
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~-~-------------------------~~~elvav~~~~~~~~~-------------- 42 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAK-Q-------------------------PDMDLVGIFSRRATLDT-------------- 42 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTT-C-------------------------SSEEEEEEEESSSCCSS--------------
T ss_pred cceEEEECChHHHHHHHHHHHh-C-------------------------CCcEEEEEEeccccccc--------------
Confidence 3689999999999998888876 1 456655 4566533210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
........+..+...+.|+|++|+|+... .+.+.+.+..|+-||.+
T Consensus 43 --------~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h------------------~~~a~~aL~aG~~vv~~ 88 (170)
T d1f06a1 43 --------KTPVFDVADVDKHADDVDVLFLCMGSATD------------------IPEQAPKFAQFACTVDT 88 (170)
T ss_dssp --------SSCEEEGGGGGGTTTTCSEEEECSCTTTH------------------HHHHHHHHTTTSEEECC
T ss_pred --------ccccccchhhhhhccccceEEEeCCCccc------------------HHHHHHHHHCCCcEEEe
Confidence 02345566777778899999999766531 22344556778766643
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=0.00031 Score=64.73 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=66.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++++|+|+|.+|..+|..+.. -|.+|++||+..........+
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~~---------------------------fg~~v~~~d~~~~~~~~~~~~---------- 86 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIAA---------------------------FGAYVVAYDPYVSPARAAQLG---------- 86 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECTTSCHHHHHHHT----------
T ss_pred ceeeeeccccchhHHHHHHhhh---------------------------ccceEEeecCCCChhHHhhcC----------
Confidence 3689999999999999998877 688999999865443332221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.. ..+.++.+++||+|++++|-...+.+ ..+ +.....++++.++|+.|--.
T Consensus 87 ----------~~-~~~l~ell~~sDiv~~~~Plt~~T~~-----lin--------~~~l~~mk~~a~lIN~sRG~ 137 (184)
T d1ygya1 87 ----------IE-LLSLDDLLARADFISVHLPKTPETAG-----LID--------KEALAKTKPGVIIVNAARGG 137 (184)
T ss_dssp ----------CE-ECCHHHHHHHCSEEEECCCCSTTTTT-----CBC--------HHHHTTSCTTEEEEECSCTT
T ss_pred ----------ce-eccHHHHHhhCCEEEEcCCCCchhhh-----hhh--------HHHHhhhCCCceEEEecchh
Confidence 22 24678899999999999875332211 222 34556789999999865443
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.30 E-value=0.00015 Score=65.33 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=49.6
Q ss_pred ceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+||+|||+|.+|.. ....+.. ..+.+++++|.++++.+.+.+...
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~--------------------------~~~~~~~~~d~~~~~~~~~~~~~~-------- 47 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQ--------------------------WPDIELVLCTRNPKVLGTLATRYR-------- 47 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTT--------------------------STTEEEEEECSCHHHHHHHHHHTT--------
T ss_pred eEEEEEcCCHHHHHHHHHHHHh--------------------------CCCcEEEEEECCHHHHHHHHHhcc--------
Confidence 69999999999976 4445554 156788999999999998875311
Q ss_pred HHHhhhcCCceEEecCHHHHhc-cCcEEEEecCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ-KAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~adviii~v~tp~ 119 (598)
.....+|+++.++ +.|+|+||+|...
T Consensus 48 ---------~~~~~~~~~~ll~~~iD~V~I~tp~~~ 74 (167)
T d1xeaa1 48 ---------VSATCTDYRDVLQYGVDAVMIHAATDV 74 (167)
T ss_dssp ---------CCCCCSSTTGGGGGCCSEEEECSCGGG
T ss_pred ---------cccccccHHHhcccccceecccccccc
Confidence 0112355555554 6799999976543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00031 Score=64.88 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=66.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. -|.+|.+||+.... ..
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~---------------------------fg~~v~~~d~~~~~---------~~------ 81 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAES---------------------------LGMYVYFYDIENKL---------PL------ 81 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCC---------CC------
T ss_pred ceEEEEeecccchhhhhhhccc---------------------------ccceEeeccccccc---------hh------
Confidence 3689999999999999998887 68999999974211 00
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.......++++.++.||+|++++|-...+. ...| +...+.++++.++|+.|--..
T Consensus 82 --------~~~~~~~~l~ell~~sDii~i~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~aRG~l 136 (188)
T d1sc6a1 82 --------GNATQVQHLSDLLNMSDVVSLHVPENPSTK-----NMMG--------AKEISLMKPGSLLINASRGTV 136 (188)
T ss_dssp --------TTCEECSCHHHHHHHCSEEEECCCSSTTTT-----TCBC--------HHHHHHSCTTEEEEECSCSSS
T ss_pred --------hhhhhhhhHHHHHhhccceeecccCCcchh-----hhcc--------HHHHhhCCCCCEEEEcCcHHh
Confidence 112334578889999999999987443221 1222 345667899999998665433
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00062 Score=61.27 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=63.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH-HHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ-WNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-~~~~~~~~~e~~~~ 84 (598)
++++|+|.|.+|..+|..+.. .|-+|+++|++|-+.-+ .-.|
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg---------------------------~G~~V~v~e~dp~~al~A~~dG---------- 67 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRG---------------------------FGARVIITEIDPINALQAAMEG---------- 67 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHHTT----------
T ss_pred CEEEEeccccccHHHHHHHHh---------------------------CCCeeEeeecccchhHHhhcCc----------
Confidence 689999999999999999999 79999999999855332 2222
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.+ ....++++..+|+++.++++.- ..+ .+-.+.++++.|+.+.+
T Consensus 68 ----------~~-v~~~~~a~~~adivvtaTGn~~---------vI~--------~eh~~~MKdgaIL~N~G 111 (163)
T d1li4a1 68 ----------YE-VTTMDEACQEGNIFVTTTGCID---------IIL--------GRHFEQMKDDAIVCNIG 111 (163)
T ss_dssp ----------CE-ECCHHHHTTTCSEEEECSSCSC---------SBC--------HHHHTTCCTTEEEEECS
T ss_pred ----------eE-eeehhhhhhhccEEEecCCCcc---------chh--------HHHHHhccCCeEEEEec
Confidence 22 3457789999999998876532 111 23345788999998643
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.24 E-value=0.00037 Score=64.95 Aligned_cols=98 Identities=9% Similarity=0.150 Sum_probs=67.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|++||+.... +. +
T Consensus 46 ktvgIiG~G~IG~~va~~l~~---------------------------fg~~v~~~d~~~~~------~~----~----- 83 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKG---------------------------FGAKVIAYDPYPMK------GD----H----- 83 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCS------SC----C-----
T ss_pred eeeeeeecccccccccccccc---------------------------cceeeeccCCccch------hh----h-----
Confidence 689999999999999999988 68999999985221 10 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.... ..++++.++.||+|++++|....+.+ ..| +.....++++.++|+.|--..=..+.
T Consensus 84 -------~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~aRG~vvde~a 142 (199)
T d1dxya1 84 -------PDFD-YVSLEDLFKQSDVIDLHVPGIEQNTH-----IIN--------EAAFNLMKPGAIVINTARPNLIDTQA 142 (199)
T ss_dssp -------TTCE-ECCHHHHHHHCSEEEECCCCCGGGTT-----SBC--------HHHHHHSCTTEEEEECSCTTSBCHHH
T ss_pred -------cchh-HHHHHHHHHhcccceeeecccccccc-----ccc--------HHHhhccCCceEEEecccHhhhhhHH
Confidence 1122 24678889999999999875433221 222 34556789999999876544433333
Q ss_pred H
Q psy11160 166 I 166 (598)
Q Consensus 166 ~ 166 (598)
+
T Consensus 143 L 143 (199)
T d1dxya1 143 M 143 (199)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.23 E-value=0.00047 Score=62.87 Aligned_cols=71 Identities=7% Similarity=0.109 Sum_probs=50.0
Q ss_pred ceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.||+|||+|.+|.. ....+.. ....++|+ ++|+++++.+.+.+..
T Consensus 4 irigiIG~G~~g~~~h~~~l~~-------------------------~~~~~~i~~v~d~~~~~~~~~~~~~-------- 50 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKN-------------------------LSHLFEITAVTSRTRSHAEEFAKMV-------- 50 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHT-------------------------TTTTEEEEEEECSSHHHHHHHHHHH--------
T ss_pred cEEEEEcCCHHHHHHHHHHHHh-------------------------CCCCeEEEEEEeccHhhhhhhhccc--------
Confidence 68999999999986 4556655 00235666 6799999988776421
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
+.....+|+++.++ +.|+|+||+|+.
T Consensus 51 ---------~~~~~~~~~~ell~~~~id~v~I~tp~~ 78 (181)
T d1zh8a1 51 ---------GNPAVFDSYEELLESGLVDAVDLTLPVE 78 (181)
T ss_dssp ---------SSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred ---------cccceeeeeeccccccccceeecccccc
Confidence 12345688888876 478999997654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00016 Score=58.84 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=48.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH--HHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE--RIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~~~~~~~~~~~e~~ 82 (598)
.+||+|+|+|..|.++|..|+. .|.+|+++|.+.. ..+.++.+
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~---------------------------~g~~v~~~D~~~~~~~~~~~~~~-------- 49 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLA---------------------------RGVTPRVMDTRMTPPGLDKLPEA-------- 49 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHH---------------------------TTCCCEEEESSSSCTTGGGSCTT--------
T ss_pred CCEEEEEeECHHHHHHHHHHHH---------------------------CCCEEEEeeCCcCchhHHHHhhc--------
Confidence 3689999999999999999999 8999999998532 11111111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
....+.......+.++|+||++-.-|.
T Consensus 50 ----------~~~~~~~~~~~~~~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 50 ----------VERHTGSLNDEWLMAADLIVASPGIAL 76 (93)
T ss_dssp ----------SCEEESBCCHHHHHHCSEEEECTTSCT
T ss_pred ----------cceeecccchhhhccCCEEEECCCCCC
Confidence 123333333456889999999855443
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.21 E-value=0.00016 Score=67.96 Aligned_cols=37 Identities=16% Similarity=0.437 Sum_probs=34.9
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
||++.+||+|||+|..|+++|..|++ +|++|+++|++
T Consensus 2 ~~~~~~kVvVIGaGiaGl~~A~~L~~---------------------------~G~~V~vier~ 38 (268)
T d1c0pa1 2 MMHSQKRVVVLGSGVIGLSSALILAR---------------------------KGYSVHILARD 38 (268)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESS
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHH---------------------------CCCCEEEEeCC
Confidence 78888999999999999999999999 89999999984
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.09 E-value=0.00049 Score=63.03 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=72.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCC-CCCC--CC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKL-PIYE--PG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~-~~~e--~~ 82 (598)
-||.|||+|.+|+.-+..... -|-+|+++|+++++.+++++-.. .+.. ..
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~---------------------------lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~ 82 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKR---------------------------LGAVVMATDVRAATKEQVESLGGKFITVDDEA 82 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCSTTHHHHHHTTCEECCC----
T ss_pred cEEEEEcCcHHHHHHHHHHHH---------------------------cCCEEEEEeccHHHHHHHHHhhcceEEEeccc
Confidence 489999999999988877666 78999999999999999885321 1110 00
Q ss_pred hHHHHh-----hhcCCce--EEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 83 LDEVVK-----KTRDVNL--FFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 83 ~~~~~~-----~~~~~~~--~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
...... +...... .....+.+.+++||+||.++-.|-.+ .|-+ +-+...+.+++|.+||+-
T Consensus 83 ~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~-------aP~l-----it~~mv~~Mk~GSVIVDv 150 (183)
T d1l7da1 83 MKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP-------APVL-----ITEEMVTKMKPGSVIIDL 150 (183)
T ss_dssp -------------------CCHHHHHHHHHTTCSEEEECCCCTTSC-------CCCC-----SCHHHHTTSCTTCEEEET
T ss_pred cccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcc-------ccee-----ehHHHHHhcCCCcEEEEE
Confidence 000000 0000000 00112345688999999998777432 2322 235677889999999997
Q ss_pred cCCchH
Q psy11160 156 STVPVR 161 (598)
Q Consensus 156 STv~~~ 161 (598)
|.-.-|
T Consensus 151 aidqGG 156 (183)
T d1l7da1 151 AVEAGG 156 (183)
T ss_dssp TGGGTC
T ss_pred eecCCC
Confidence 664443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.08 E-value=0.00098 Score=54.65 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=49.7
Q ss_pred CCCCCceEEEECCChhH-HHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH-HHHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYVG-GPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE-ERIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG-~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~-~~~~~~~~~~~~~ 78 (598)
||.+.+||=|||.|-.| +++|..|.+ .|++|+|+|... ...+.+.+...
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~---------------------------~G~~VsGSD~~~~~~~~~L~~~Gi-- 54 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLN---------------------------EGYQISGSDIADGVVTQRLAQAGA-- 54 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHH---------------------------HTCEEEEEESCCSHHHHHHHHTTC--
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHh---------------------------CCCEEEEEeCCCChhhhHHHHCCC--
Confidence 46778999999999999 556888888 899999999863 33344432211
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.+..-.+ .+-+.++|+||++-.-|
T Consensus 55 ---------------~v~~g~~-~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 55 ---------------KIYIGHA-EEHIEGASVVVVSSAIK 78 (96)
T ss_dssp ---------------EEEESCC-GGGGTTCSEEEECTTSC
T ss_pred ---------------eEEECCc-cccCCCCCEEEECCCcC
Confidence 1222222 33578899998885444
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.04 E-value=0.0014 Score=58.59 Aligned_cols=101 Identities=11% Similarity=0.200 Sum_probs=56.4
Q ss_pred CCCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHH--HHHHHHcCCCC
Q psy11160 2 VQTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEE--RIRQWNSNKLP 77 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~--~~~~~~~~~~~ 77 (598)
|++.+||+|||+|.+|.. +...|.. . +..+++. .+++++ .+....+...+
T Consensus 1 M~kkirvaIIGaG~ig~~~~~~~l~~-~-------------------------~~~el~avas~~~~~~~~~~a~~~~i~ 54 (157)
T d1nvmb1 1 MNQKLKVAIIGSGNIGTDLMIKVLRN-A-------------------------KYLEMGAMVGIDAASDGLARAQRMGVT 54 (157)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHHH-C-------------------------SSEEEEEEECSCTTCHHHHHHHHTTCC
T ss_pred CCCCcEEEEEcCcHHHHHHHHHHHhh-C-------------------------CcceEEEEEecchhccchhhhhhcCCc
Confidence 344579999999999986 4555544 1 3456655 477754 22333332233
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
....+++++++. + ...+.|+||+++|... .++ -....+.++.|++|++.|.
T Consensus 55 ~~~~~~d~l~~~-----------~--~~~~iDiVf~ATpag~--------------h~~--~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 55 TTYAGVEGLIKL-----------P--EFADIDFVFDATSASA--------------HVQ--NEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp EESSHHHHHHHS-----------G--GGGGEEEEEECSCHHH--------------HHH--HHHHHHHHCTTCEEEECST
T ss_pred ccccceeeeeec-----------c--cccccCEEEEcCCchh--------------HHH--hHHHHHHHHcCCEEEEccc
Confidence 322223222210 1 1357899999965321 111 1223445688999999886
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=96.76 E-value=0.0025 Score=59.90 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=50.6
Q ss_pred ceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
-+|+|||+|.+|.. ....+.. ..+.+|+ ++|+++++.+.+.+... +.
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~--------------------------~~~~~ivav~d~~~~~a~~~~~~~~-i~---- 82 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAG--------------------------CQHSRIEALVSGNAEKAKIVAAEYG-VD---- 82 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTT--------------------------CSSEEEEEEECSCHHHHHHHHHHTT-CC----
T ss_pred EEEEEEcCcHHHHHHHHHHHHh--------------------------CCCceEEEEecCCHHHHHHHHHhhc-cc----
Confidence 48999999999975 4444443 1467777 78999999988764210 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
.......+|+++.++ +.|+|+||+|...
T Consensus 83 --------~~~~~~~~d~~ell~~~~iD~V~I~tp~~~ 112 (221)
T d1h6da1 83 --------PRKIYDYSNFDKIAKDPKIDAVYIILPNSL 112 (221)
T ss_dssp --------GGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred --------cccccccCchhhhcccccceeeeeccchhh
Confidence 023455677887775 5789999976543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.76 E-value=0.0027 Score=58.62 Aligned_cols=98 Identities=12% Similarity=0.203 Sum_probs=70.6
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|||+|+ ..-+-.+++.|..-|.+|.+|||....+.... . .+....++.+.++
T Consensus 46 eL~gktvgIiG~----------G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-~-----------~~~~~~~l~~ll~ 103 (193)
T d1mx3a1 46 RIRGETLGIIGL----------GRVGQAVALRAKAFGFNVLFYDPYLSDGVERA-L-----------GLQRVSTLQDLLF 103 (193)
T ss_dssp CCTTCEEEEECC----------SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH-H-----------TCEECSSHHHHHH
T ss_pred eeeCceEEEecc----------ccccccceeeeeccccceeeccCcccccchhh-h-----------ccccccchhhccc
Confidence 478999999998 36778999999999999999999876543221 1 2355678999999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCCh
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNH 511 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~ 511 (598)
.+|+|+++.+... -+. ++.+. .+.|++..+++.+.+ ++|.
T Consensus 104 ~sD~i~~~~plt~~T~~li~~~~-l~~mk~~a~lIN~sRG~ivde 147 (193)
T d1mx3a1 104 HSDCVTLHCGLNEHNHHLINDFT-VKQMRQGAFLVNTARGGLVDE 147 (193)
T ss_dssp HCSEEEECCCCCTTCTTSBSHHH-HTTSCTTEEEEECSCTTSBCH
T ss_pred cCCEEEEeecccccchhhhhHHH-HhccCCCCeEEecCCceEEcH
Confidence 9999999887543 222 35444 446777667766543 3444
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=96.54 E-value=0.012 Score=53.58 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=68.3
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ .+-+..+++.|...|.+|.+|||........... .+....++.+.++
T Consensus 41 ~l~~~~vgiiG~----------G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-----------~~~~~~~l~~~l~ 99 (188)
T d2naca1 41 DLEAMHVGTVAA----------GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-----------NLTWHATREDMYP 99 (188)
T ss_dssp CCTTCEEEEECC----------SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-----------TCEECSSHHHHGG
T ss_pred eccccceeeccc----------cccchhhhhhhhccCceEEEEeeccccccccccc-----------cccccCCHHHHHH
Confidence 468999999997 3567899999999999999999976555443322 2356788999999
Q ss_pred CCCEEEEEeeccch-hh-ccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDEF-VT-LDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~f-~~-ld~~~l~~~m~~~~iI~D~r 506 (598)
.+|+++++.+..+- ++ ++.+.+ +.|++..+++-+.
T Consensus 100 ~sD~v~~~~plt~~T~~li~~~~l-~~mk~ga~lIN~a 136 (188)
T d2naca1 100 VCDVVTLNCPLHPETEHMINDETL-KLFKRGAYIVNTA 136 (188)
T ss_dssp GCSEEEECSCCCTTTTTCBSHHHH-TTSCTTEEEEECS
T ss_pred hccchhhcccccccchhhhHHHHH-HhCCCCCEEEecC
Confidence 99999998776542 22 455544 4566655665544
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.53 E-value=0.0041 Score=55.54 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=64.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
-+++.|+|.|++|...|..+.. .|-+|+++++||-+.-+..-
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg---------------------------~Ga~V~V~E~DPi~alqA~m----------- 64 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKG---------------------------LGARVYITEIDPICAIQAVM----------- 64 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHH---------------------------HTCEEEEECSCHHHHHHHHT-----------
T ss_pred CCEEEEecccccchhHHHHHHh---------------------------CCCEEEEEecCchhhHHHHh-----------
Confidence 3689999999999999999998 78999999999955433221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.+.+ ..+.+++++.+|++|.+++... -.+ .+-.+.++++.||.+..
T Consensus 65 --------dGf~-v~~~~~a~~~aDi~vTaTGn~~---------vI~--------~~h~~~MKdgaIl~N~G 110 (163)
T d1v8ba1 65 --------EGFN-VVTLDEIVDKGDFFITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIG 110 (163)
T ss_dssp --------TTCE-ECCHHHHTTTCSEEEECCSSSS---------SBC--------HHHHTTCCTTCEEEECS
T ss_pred --------cCCc-cCchhHccccCcEEEEcCCCCc---------ccc--------HHHHHHhhCCeEEEecc
Confidence 1233 3567889999999999976532 011 23345688999998644
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.51 E-value=0.0054 Score=55.92 Aligned_cols=94 Identities=15% Similarity=0.267 Sum_probs=67.8
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+-.+++.|...|.+|.+|||...+. ...+..++.++++.
T Consensus 40 l~gk~vgIiG~----------G~IG~~va~~l~~~g~~v~~~d~~~~~~-----------------~~~~~~~l~ell~~ 92 (181)
T d1qp8a1 40 IQGEKVAVLGL----------GEIGTRVGKILAALGAQVRGFSRTPKEG-----------------PWRFTNSLEEALRE 92 (181)
T ss_dssp CTTCEEEEESC----------STHHHHHHHHHHHTTCEEEEECSSCCCS-----------------SSCCBSCSHHHHTT
T ss_pred ccCceEEEecc----------ccccccceeeeecccccccccccccccc-----------------ceeeeechhhhhhc
Confidence 57899999998 4678899999999999999999975421 11345688999999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
+|+|+++.+-. +-++ +|.+. .+.|++..+++...+ ++|.+.
T Consensus 93 sDiv~~~~pl~~~t~~li~~~~-l~~mk~~ailIN~~RG~ivd~~a 137 (181)
T d1qp8a1 93 ARAAVCALPLNKHTRGLVKYQH-LALMAEDAVFVNVGRAEVLDRDG 137 (181)
T ss_dssp CSEEEECCCCSTTTTTCBCHHH-HTTSCTTCEEEECSCGGGBCHHH
T ss_pred cchhhcccccccccccccccce-eeeccccceEEeccccccccchh
Confidence 99999977543 3333 45444 456777777777653 455433
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.47 E-value=0.0018 Score=54.79 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=30.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
..+|+|||.|++|.-+|..|+. .|.+|++++++
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~---------------------------~g~~Vtlv~~~ 54 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKR---------------------------LGIDSYIFARG 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEECSS
T ss_pred CCEEEEECCchHHHHHHHHHHh---------------------------ccccceeeehh
Confidence 4689999999999999999999 79999999984
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.44 E-value=0.0062 Score=54.91 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=68.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~~~~~~~~e~~~~ 84 (598)
++|+|||.|.-|.+-|.+|.+ .|.+|++==+... ..+...+
T Consensus 17 k~IaViGYGsQG~AhAlNLrD---------------------------SG~~V~VGLr~gs~s~~~A~~----------- 58 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKD---------------------------SGVDVTVGLRSGSATVAKAEA----------- 58 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECCTTCHHHHHHHH-----------
T ss_pred CEEEEEeeCcHhHHHHhhhhh---------------------------cCCCEEEEcCCCCccHHHHhh-----------
Confidence 689999999999999999999 8999888655432 2222221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv~~ 160 (598)
.++. ..+.+++++.||+|++-+|+. .-.++. +.|.+++++++.+........
T Consensus 59 --------~Gf~-v~~~~eA~~~aDiim~L~PD~---------------~q~~vy~~~I~p~lk~g~~L~FaHGfnI 111 (182)
T d1np3a2 59 --------HGLK-VADVKTAVAAADVVMILTPDE---------------FQGRLYKEEIEPNLKKGATLAFAHGFSI 111 (182)
T ss_dssp --------TTCE-EECHHHHHHTCSEEEECSCHH---------------HHHHHHHHHTGGGCCTTCEEEESCCHHH
T ss_pred --------hccc-cccHHHHhhhcCeeeeecchH---------------HHHHHHHHhhhhhcCCCcEEEEeccceE
Confidence 1233 356788999999999997642 223455 479999999999988766543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.014 Score=51.87 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=62.1
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc-CCCCCC--
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS-NKLPIY-- 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~-~~~~~~-- 79 (598)
...+|.|+|+|.+|+..+..+.. .|. +|+++|+++++.+..++ |-....
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~---------------------------~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~ 78 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKA---------------------------MGAAQVVVTDLSATRLSKAKEIGADLVLQI 78 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCccHHHHHHHHHH---------------------------cCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence 34689999999999988877777 676 89999999999998775 321111
Q ss_pred -CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 80 -EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 80 -e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
+....+..+.. + ...=..+|++|-|++.+ ..++...+.++++-.++.-+.
T Consensus 79 ~~~~~~~~~~~~-------~---~~~g~g~Dvvid~~G~~------------------~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 79 SKESPQEIARKV-------E---GQLGCKPEVTIECTGAE------------------ASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SSCCHHHHHHHH-------H---HHHTSCCSEEEECSCCH------------------HHHHHHHHHSCTTCEEEECSC
T ss_pred cccccccccccc-------c---ccCCCCceEEEeccCCc------------------hhHHHHHHHhcCCCEEEEEec
Confidence 11111111000 0 00013589999998654 234555667777776666554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.28 E-value=0.0043 Score=55.11 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=66.0
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAI 475 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adal 475 (598)
||+|+|+ ......+++.|.+.|++|.+||..... . +.+.. . ....+.++.++++++|++
T Consensus 2 kIgiIGl----------G~MG~~~A~~L~~~G~~V~~~d~~~~~--~-~~~~~----~----~~~~~~~~~e~~~~~d~i 60 (161)
T d1vpda2 2 KVGFIGL----------GIMGKPMSKNLLKAGYSLVVSDRNPEA--I-ADVIA----A----GAETASTAKAIAEQCDVI 60 (161)
T ss_dssp EEEEECC----------STTHHHHHHHHHHTTCEEEEECSCHHH--H-HHHHH----T----TCEECSSHHHHHHHCSEE
T ss_pred EEEEEeh----------hHHHHHHHHHHHHCCCeEEEEeCCcch--h-HHHHH----h----hhhhcccHHHHHhCCCeE
Confidence 7999998 367899999999999999999975322 2 11211 1 336778999999999999
Q ss_pred EEEeeccc-hhhcc--HHHHHhccCCCcEEEecCCCCC
Q psy11160 476 VVCTEWDE-FVTLD--YKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 476 ii~t~~~~-f~~ld--~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+++...+. .++.- .+.+...+.+..+|+|...+..
T Consensus 61 i~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p 98 (161)
T d1vpda2 61 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAP 98 (161)
T ss_dssp EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCH
T ss_pred EEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCH
Confidence 99986543 22221 1234445556679999988753
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.26 E-value=0.0054 Score=61.43 Aligned_cols=77 Identities=10% Similarity=0.084 Sum_probs=58.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+...+..+..-+ .-.+|.+|++++++.+++.+.... ++|
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~-------------------------~i~~V~v~~r~~~~~~~~~~~l~~--~~g-- 178 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHL-------------------------GIEEIVAYDTDPLATAKLIANLKE--YSG-- 178 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHS-------------------------CCCEEEEECSSHHHHHHHHHHHTT--CTT--
T ss_pred CceEEEEcccHHHHHHHHHHhhhc-------------------------ceeeeEEEecChHHHHHHHHhhhh--ccC--
Confidence 368999999999999998887611 235899999999998887642110 111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
-.+..+.++++++++||+|+.|+.++
T Consensus 179 --------~~v~~~~s~~eav~~ADIi~t~Tas~ 204 (340)
T d1x7da_ 179 --------LTIRRASSVAEAVKGVDIITTVTADK 204 (340)
T ss_dssp --------CEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred --------CCceecCCHHHHHhcCCceeeccccC
Confidence 24677899999999999999997655
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.21 E-value=0.0066 Score=56.09 Aligned_cols=91 Identities=19% Similarity=0.142 Sum_probs=65.6
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|||+|+ .+-+..+++.|..-|.+|.+|||......... . ....++.+.++
T Consensus 40 el~gk~vgIiG~----------G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~-------------~-~~~~~l~~~l~ 95 (197)
T d1j4aa1 40 EVRDQVVGVVGT----------GHIGQVFMQIMEGFGAKVITYDIFRNPELEKK-------------G-YYVDSLDDLYK 95 (197)
T ss_dssp CGGGSEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHT-------------T-CBCSCHHHHHH
T ss_pred cccCCeEEEecc----------cccchhHHHhHhhhcccccccCcccccccccc-------------e-eeecccccccc
Confidence 467899999998 46788999999999999999999876443211 1 23467889999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r 506 (598)
.+|+|+++.+..+ -++ ++.+.+ +.|++..+++.+.
T Consensus 96 ~sDii~~~~plt~~T~~li~~~~l-~~mk~~a~lIN~s 132 (197)
T d1j4aa1 96 QADVISLHVPDVPANVHMINDESI-AKMKQDVVIVNVS 132 (197)
T ss_dssp HCSEEEECSCCCGGGTTCBSHHHH-HHSCTTEEEEECS
T ss_pred ccccccccCCccccccccccHHHH-hhhCCccEEEecC
Confidence 9999999876533 222 455554 4577666666553
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.21 E-value=0.0027 Score=59.30 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=63.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHH-cCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWN-SNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~-~~~~~~~e~~ 82 (598)
++||+|||.|.-|.+-|.+|.+- ++|.. .|.+|++ ...+....+... .|..+
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDS-------G~~~~--------------sgv~V~VGLr~gs~S~~kA~~dGf~v----- 97 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDS-------LTEAK--------------SDVVVKIGLRKGSNSFAEARAAGFSE----- 97 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHH-------HHHTT--------------CCCEEEEEECTTCSCHHHHHHTTCCG-----
T ss_pred CCEEEEEEeccHHHHHHHhChhh-------ccccc--------------CCceEEEEeCCCChhHHHHHHcCCcc-----
Confidence 46899999999999999999990 00000 2344544 332222222222 23110
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.+. ...+..++++.||+|++.+|.. .-.++.++|.+++++++.+...-..
T Consensus 98 ----------~~~-~v~~v~EAv~~ADiVmiLlPDe---------------~Q~~vy~~I~p~Lk~G~~L~FaHGF 147 (226)
T d1qmga2 98 ----------ENG-TLGDMWETISGSDLVLLLISDS---------------AQADNYEKVFSHMKPNSILGLSHGF 147 (226)
T ss_dssp ----------GGT-CEEEHHHHHHTCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEESSSH
T ss_pred ----------CCC-cccCHHHHHhhCCEEEEecchH---------------HHHHHHHHHHHhcCCCceeeecchh
Confidence 011 1234678999999999997643 2345667899999999998875444
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.19 E-value=0.051 Score=47.82 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|.+|+..+..+.. .|.+|+++|+++++.+.+++
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~---------------------------~Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKA---------------------------YGAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEcccccchhhHhhHhh---------------------------hcccccccchHHHHHHHHHH
Confidence 34689999999999998877766 78899999999999988764
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=96.16 E-value=0.0098 Score=54.56 Aligned_cols=94 Identities=10% Similarity=0.090 Sum_probs=66.4
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-+..+++.|..-|.+|.+|||........... .....+++.++++
T Consensus 44 ~l~g~tvgIiG~----------G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-----------~~~~~~~l~~ll~ 102 (191)
T d1gdha1 44 KLDNKTLGIYGF----------GSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY-----------QATFHDSLDSLLS 102 (191)
T ss_dssp CCTTCEEEEECC----------SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH-----------TCEECSSHHHHHH
T ss_pred eecccceEEeec----------ccchHHHHHHHHhhccccccccccccccchhhcc-----------cccccCCHHHHHh
Confidence 457899999998 3567889999999999999999977644322211 2245678899999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r 506 (598)
.+|+|+++.+... -++ +|-+. .+.|++..+++.+.
T Consensus 103 ~sD~v~l~~plt~~T~~li~~~~-l~~mk~~a~lIN~s 139 (191)
T d1gdha1 103 VSQFFSLNAPSTPETRYFFNKAT-IKSLPQGAIVVNTA 139 (191)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHH-HTTSCTTEEEEECS
T ss_pred hCCeEEecCCCCchHhheecHHH-hhCcCCccEEEecC
Confidence 9999999887643 233 45443 44576666665544
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0061 Score=48.99 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=47.3
Q ss_pred ceEEEECCChhHH-HHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH-HHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGG-PTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE-ERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~-~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~-~~~~~~~~~~~~~~e~~~ 83 (598)
|||=|||.|-.|. ++|..|.+ .|++|++.|+.+ +..++|++...+++
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~---------------------------~G~~VsGSD~~~~~~t~~L~~~Gi~i~---- 50 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFS---------------------------NGNDVYGSNIEETERTAYLRKLGIPIF---- 50 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEECSSCCHHHHHHHHTTCCEE----
T ss_pred cEEEEEeECHHHHHHHHHHHHh---------------------------CCCeEEEEeCCCChhHHHHHHCCCeEE----
Confidence 7899999999998 67888888 899999999875 45556664323321
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.-.+ .+-+.++|+||.+-.-|
T Consensus 51 -------------~gh~-~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 51 -------------VPHS-ADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp -------------SSCC-TTSCCCCSEEEECTTCC
T ss_pred -------------eeec-ccccCCCCEEEEecCcC
Confidence 1112 22357899988884434
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.90 E-value=0.013 Score=52.94 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=23.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcce
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVT 34 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~ 34 (598)
|+||+|+|+ ||+|.-+...|++ .|++++.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~-HP~~ei~ 30 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKN-HPEAKIT 30 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHH-CTTEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHh-CCCceEE
Confidence 479999997 9999999999987 5555443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.90 E-value=0.0025 Score=59.93 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+.+||+|||+|..|+.+|..|++ +|++|+++|+++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~---------------------------~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRD---------------------------AGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHH---------------------------CCCCEEEEeCCC
Confidence 45799999999999999999999 789999998754
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=95.87 E-value=0.01 Score=54.83 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=69.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-+..+++.|..-|.+|.+|||........ .+. ..+..+.++
T Consensus 42 ~l~~ktvgIiG~----------G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~--------------~~~-~~~l~~l~~ 96 (199)
T d1dxya1 42 ELGQQTVGVMGT----------GHIGQVAIKLFKGFGAKVIAYDPYPMKGDHP--------------DFD-YVSLEDLFK 96 (199)
T ss_dssp CGGGSEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCSSCCT--------------TCE-ECCHHHHHH
T ss_pred cccceeeeeeec----------ccccccccccccccceeeeccCCccchhhhc--------------chh-HHHHHHHHH
Confidence 467899999998 3677899999999999999999976432110 122 357889999
Q ss_pred CCCEEEEEeeccch-hh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWDEF-VT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~~f-~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|.++++....+- ++ +|-+.+ +.|++..+++-+.+ +.|.+.+
T Consensus 97 ~~D~v~~~~plt~~T~~li~~~~l-~~mk~~a~lIN~aRG~vvde~aL 143 (199)
T d1dxya1 97 QSDVIDLHVPGIEQNTHIINEAAF-NLMKPGAIVINTARPNLIDTQAM 143 (199)
T ss_dssp HCSEEEECCCCCGGGTTSBCHHHH-HHSCTTEEEEECSCTTSBCHHHH
T ss_pred hcccceeeecccccccccccHHHh-hccCCceEEEecccHhhhhhHHH
Confidence 99999998876542 22 465554 56777767776554 5665544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.86 E-value=0.012 Score=52.88 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=35.3
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|.+|+..+..+.. .|. +|+++|++++|.+..++
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~---------------------------~Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKL---------------------------RGAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHT---------------------------TTCSCEEEECCCHHHHHHHHH
T ss_pred CCCEEEEEcCCcchhhhhhhhhc---------------------------ccccccccccchhhhHHHHHh
Confidence 44689999999999887766665 674 79999999999887764
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.82 E-value=0.02 Score=47.44 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=30.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|.|||.|.+|..-|..|.+ .|.+|++++...
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~---------------------------~ga~v~v~~~~~ 45 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLE---------------------------AGARLTVNALTF 45 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeccC
Confidence 4689999999999999999999 899999998643
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.01 Score=53.03 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=53.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|.|+|+|-.+.+++..|++ .|.+|++++|+.++.+.+.+.....
T Consensus 18 ~k~vlIlGaGGaarai~~al~~---------------------------~g~~i~I~nRt~~ka~~l~~~~~~~------ 64 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLS---------------------------LDCAVTITNRTVSRAEELAKLFAHT------ 64 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSHHHHHHHHHHTGGG------
T ss_pred CCEEEEECCcHHHHHHHHHhcc---------------------------cceEEEeccchHHHHHHHHHHHhhc------
Confidence 4689999999999999999999 6789999999999998876421100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
..+...........++|+||-|+|...
T Consensus 65 --------~~~~~~~~~~~~~~~~dliIN~Tp~G~ 91 (170)
T d1nyta1 65 --------GSIQALSMDELEGHEFDLIINATSSGI 91 (170)
T ss_dssp --------SSEEECCSGGGTTCCCSEEEECCSCGG
T ss_pred --------ccccccccccccccccceeecccccCc
Confidence 123333322223567999999976543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.75 E-value=0.0092 Score=52.21 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=25.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHH-hCCCCcceec
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL-KCPNIQVTVV 36 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~-~~~~~~~~~~ 36 (598)
|||+|||+ ||+|.-+...|.+ .+|.+....+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~ 35 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLL 35 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEE
Confidence 79999998 9999999999985 3566655444
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.70 E-value=0.003 Score=59.25 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=30.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
|+|+|||.|.-|++.|..|++ .|++|++++.+
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~---------------------------~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRS---------------------------RGTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHT---------------------------TTCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEecC
Confidence 689999999999999999999 89999999974
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.69 E-value=0.03 Score=50.19 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=35.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
..+|.|+|+|.+|...+..+.. .|. +|+++|+++++.+.+++
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~---------------------------~Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARS---------------------------LGAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTBSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCccchhheecccc---------------------------ccccccccccccccccccccc
Confidence 4689999999999887766666 676 89999999999998775
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0069 Score=53.23 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
.||+|+|+ |+||.-+...|.+
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~ 23 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVE 23 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH
T ss_pred cEEEEECCccHHHHHHHHHHHh
Confidence 58999998 9999999976654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.69 E-value=0.012 Score=54.35 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=37.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.+|+|-|+|.||..+|..|.+ .|.+|+++|.+++++.....
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~---------------------------~Gakvvv~d~d~~~~~~~~~ 68 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAE---------------------------AGAQLLVADTDTERVAHAVA 68 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEecchHHHHHHHHh
Confidence 689999999999999999999 89999999999999987664
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.03 Score=48.70 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=33.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR 69 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~ 69 (598)
..+|.|+|+|.+|..++..|.+ .|++|+++|.++++..
T Consensus 3 knHiII~G~g~~g~~l~~~L~~---------------------------~~~~v~vId~d~~~~~ 40 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQ---------------------------RGQNVTVISNLPEDDI 40 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEECCCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------cCCCEEEEeccchhHH
Confidence 3589999999999999999999 7999999999986543
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.65 E-value=0.019 Score=50.80 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=70.4
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
++|+|+|+ ......+++.|.+.|++|.+||-.... . +.+.. .....+.++.++++.+|.
T Consensus 2 ~kIg~IGl----------G~MG~~iA~~L~~~g~~v~~~d~~~~~--~-~~~~~--------~~~~~~~~~~e~~~~~di 60 (162)
T d3cuma2 2 KQIAFIGL----------GHMGAPMATNLLKAGYLLNVFDLVQSA--V-DGLVA--------AGASAARSARDAVQGADV 60 (162)
T ss_dssp CEEEEECC----------STTHHHHHHHHHHTTCEEEEECSSHHH--H-HHHHH--------TTCEECSSHHHHHTSCSE
T ss_pred CEEEEEEE----------HHHHHHHHHHHHHCCCeEEEEECchhh--h-hhhhh--------hhccccchhhhhccccCe
Confidence 47999998 357788999999999999999964322 1 11110 133667899999999999
Q ss_pred EEEEeeccch-hhc--cHHHHHhccCCCcEEEecCCCCCh------hhhhhccceee
Q psy11160 475 IVVCTEWDEF-VTL--DYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNVH 522 (598)
Q Consensus 475 lii~t~~~~f-~~l--d~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y~ 522 (598)
++++...+.- +++ ....+.....+..+|+|...+... +.+++.|+.|-
T Consensus 61 ii~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~ 117 (162)
T d3cuma2 61 VISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML 117 (162)
T ss_dssp EEECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred eeecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEE
Confidence 9999887641 111 011123334455699999988642 33445555553
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.63 E-value=0.028 Score=50.85 Aligned_cols=82 Identities=12% Similarity=0.236 Sum_probs=49.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEE-eCCHHHH-HHHHcCCCCCC--CC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV-DKSEERI-RQWNSNKLPIY--EP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-d~~~~~~-~~~~~~~~~~~--e~ 81 (598)
-||+|.|.|.+|..+++.+.+ . ..++|+++ |+++... ..+.....+.+ +.
T Consensus 2 IKVaINGfGRIGR~v~Ral~~-~-------------------------~dievVaInd~~~~~~~~~~~~~~~~~~~~~~ 55 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIK-Q-------------------------PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQ 55 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHT-C-------------------------TTEEEEEEECSSCSHHHHHHHHTTCCEECCGG
T ss_pred eEEEEECCCHHHHHHHHHHHh-C-------------------------CCCEEEEEECCCCcHHHHHhcccCcceeccCc
Confidence 589999999999999999987 1 44666664 4433222 22222222222 11
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
+.. .+. ..++....+..+..+++|+||-|+|.
T Consensus 56 ~~~-~~~---~~~i~v~g~~~~~~~~vDiViecTG~ 87 (178)
T d1b7go1 56 SIK-KFE---ESGIPVAGTVEDLIKTSDIVVDTTPN 87 (178)
T ss_dssp GHH-HHH---TTTCCCCCCHHHHHHHCSEEEECCST
T ss_pred cce-ecc---ccceecCCchhhhhhcCCEEEECCCC
Confidence 111 111 13345556777788899999999764
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=95.61 E-value=0.019 Score=50.43 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
|||+|||+ ||+|.-+...|..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~ 22 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVE 22 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHh
Confidence 69999987 9999999976654
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.58 E-value=0.024 Score=51.45 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=64.9
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ ..-+..+++.|..-|.+|.+|||...++..... .+. ..+..++++
T Consensus 41 ~l~~k~vgiiG~----------G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~------------~~~-~~~l~ell~ 97 (184)
T d1ygya1 41 EIFGKTVGVVGL----------GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL------------GIE-LLSLDDLLA 97 (184)
T ss_dssp CCTTCEEEEECC----------SHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH------------TCE-ECCHHHHHH
T ss_pred cccceeeeeccc----------cchhHHHHHHhhhccceEEeecCCCChhHHhhc------------Cce-eccHHHHHh
Confidence 367899999997 356788999999999999999999876543321 112 357889999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r 506 (598)
.+|+|+++.+... -++ +|.+. .+.|++..+++.+.
T Consensus 98 ~sDiv~~~~Plt~~T~~lin~~~-l~~mk~~a~lIN~s 134 (184)
T d1ygya1 98 RADFISVHLPKTPETAGLIDKEA-LAKTKPGVIIVNAA 134 (184)
T ss_dssp HCSEEEECCCCSTTTTTCBCHHH-HTTSCTTEEEEECS
T ss_pred hCCEEEEcCCCCchhhhhhhHHH-HhhhCCCceEEEec
Confidence 9999999877543 223 34444 34566655665543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.50 E-value=0.011 Score=52.85 Aligned_cols=68 Identities=6% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+.++|.|+|+|-++.+++..|.+ .|. +|++++|+.++.+.+.+..
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~---------------------------~g~~~I~I~nR~~~ka~~L~~~~------- 61 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKN---------------------------SGFEKLKIYARNVKTGQYLAALY------- 61 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHH---------------------------TTCCCEEEECSCHHHHHHHHHHH-------
T ss_pred CCCeEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEecccHHHHHHHHHhh-------
Confidence 34689999999999999999999 674 8999999999998876420
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+........ ..++|+||-|+|-.
T Consensus 62 -----------~~~~~~~~~--~~~~DliINaTpiG 84 (167)
T d1npya1 62 -----------GYAYINSLE--NQQADILVNVTSIG 84 (167)
T ss_dssp -----------TCEEESCCT--TCCCSEEEECSSTT
T ss_pred -----------hhhhhhccc--ccchhhheeccccC
Confidence 011122221 35799999997643
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.49 E-value=0.016 Score=51.09 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=63.0
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAI 475 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adal 475 (598)
||+|+|+. ...-.+++.|.+.|++|..||+.-...+...+ .+. +....+..++++++|++
T Consensus 2 kI~iIG~G----------~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-------~~~---~~~~~~~~~~~~~~DiI 61 (165)
T d2f1ka2 2 KIGVVGLG----------LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-------RQL---VDEAGQDLSLLQTAKII 61 (165)
T ss_dssp EEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-------TTS---CSEEESCGGGGTTCSEE
T ss_pred EEEEEeec----------HHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-------hhc---cceeeeecccccccccc
Confidence 78999973 45567899999999999999986322111111 110 11234556889999999
Q ss_pred EEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 476 VVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 476 ii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
|++++...+.+ -++.+...+.+..+|+|..++.
T Consensus 62 ilavp~~~~~~-vl~~l~~~l~~~~iv~~~~s~~ 94 (165)
T d2f1ka2 62 FLCTPIQLILP-TLEKLIPHLSPTAIVTDVASVK 94 (165)
T ss_dssp EECSCHHHHHH-HHHHHGGGSCTTCEEEECCSCC
T ss_pred cccCcHhhhhh-hhhhhhhhcccccceeeccccc
Confidence 99998766544 2356666666667898887663
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.38 E-value=0.008 Score=54.05 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=52.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|.|+|+|-++.+++..|.+ .+.+|++++|+.++.+.+.+....
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~---------------------------~~~~i~I~nR~~~~a~~l~~~~~~------- 63 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQ---------------------------AQQNIVLANRTFSKTKELAERFQP------- 63 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHH---------------------------TTCEEEEEESSHHHHHHHHHHHGG-------
T ss_pred CCEEEEECCcHHHHHHHHHHcc---------------------------cCceeeeccchHHHHHHHHHHHhh-------
Confidence 3589999999999999999988 567999999999999987642110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
..++.........+.++|++|-|+|..
T Consensus 64 -------~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 64 -------YGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp -------GSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred -------ccccchhhhccccccccceeeeccccc
Confidence 012333332222467899999997653
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.33 E-value=0.0058 Score=55.82 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=44.2
Q ss_pred CCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEc
Q psy11160 183 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIG 262 (598)
Q Consensus 183 ~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vG 262 (598)
...|+++++++.+.+... +++.+++++||+|||||++ +. ......+..++|||+..|
T Consensus 90 ~~~~~~~v~~~~~~~~~~-~~~~~iii~Stv~pgt~~~----~~------------------~~~~~~~~~~~PE~i~~G 146 (196)
T d1dlja2 90 NYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITE----MR------------------QKFQTDRIIFSPEFLRES 146 (196)
T ss_dssp TEECCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHH----HH------------------HHTTCSCEEECCCCCCTT
T ss_pred CCcceeEEeehhhhhhhc-ccceeEEeeeecCceeeee----ee------------------eccchhhhccchhhcchh
Confidence 456899999999888765 6789999999999999862 11 122344567899999887
Q ss_pred c
Q psy11160 263 G 263 (598)
Q Consensus 263 g 263 (598)
.
T Consensus 147 ~ 147 (196)
T d1dlja2 147 K 147 (196)
T ss_dssp S
T ss_pred h
Confidence 5
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.22 E-value=0.018 Score=56.94 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=66.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+...+..+..- .+-.+|.+|++++++.+.+.+.
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~-------------------------~~i~~i~v~~r~~e~~~~~~~~---------- 169 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRV-------------------------FDIGEVKAYDVREKAAKKFVSY---------- 169 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-------------------------SCCCEEEEECSSHHHHHHHHHH----------
T ss_pred ccEEEEecCcccHHHHHHHHHHH-------------------------hhhhhcccccCCHHHHHHHHHH----------
Confidence 36799999999999999988871 1335899999999998877531
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.. .......+..+++.+||+|+.|++... |-+. .+.++++..|..-++-.|+
T Consensus 170 --~~~---~~~~~~~~~~~a~~~aDiV~taT~s~~----------P~~~---------~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 170 --CED---RGISASVQPAEEASRCDVLVTTTPSRK----------PVVK---------AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp --HHH---TTCCEEECCHHHHTSSSEEEECCCCSS----------CCBC---------GGGCCTTCEEEECSCCSTT
T ss_pred --HHh---cCCccccchhhhhccccEEEEeccCcc----------cccc---------hhhcCCCCeEeecCCcccc
Confidence 110 123344566778999999999975432 1110 1357788887765554443
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=95.22 E-value=0.018 Score=54.23 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=47.7
Q ss_pred CceEEEECCChhHHHH----HHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPT----CSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~----a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~ 79 (598)
.+||+|||+|.+|.-+ ...+.. ...+++|+ ++|+++++.+.+.+... +
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~-------------------------~~~~~~ivav~d~~~~~~~~~~~~~~-~- 68 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQ-------------------------LSSQFQIVALYNPTLKSSLQTIEQLQ-L- 68 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHH-------------------------TTTTEEEEEEECSCHHHHHHHHHHTT-C-
T ss_pred CeEEEEEecCccccHHHHHHHHHHHh-------------------------cCCCeEEEEEEcCCHHHHHHHHHhcc-c-
Confidence 3689999999755433 334443 11467877 68999999887654210 0
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
...+...++++.++ +.|+|++|+|++
T Consensus 69 -------------~~~~~~~~~~~l~~~~~iD~V~i~tp~~ 96 (237)
T d2nvwa1 69 -------------KHATGFDSLESFAQYKDIDMIVVSVKVP 96 (237)
T ss_dssp -------------TTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred -------------ccceeecchhhcccccccceeeccCCCc
Confidence 12345678887775 467899997654
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.027 Score=51.18 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=67.5
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+. .-+..+++.|..-|.+|.+|||....... ......+..+.++
T Consensus 41 ~l~~~~vgiiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------~~~~~~~l~ell~ 95 (188)
T d1sc6a1 41 EARGKKLGIIGYG----------HIGTQLGILAESLGMYVYFYDIENKLPLG---------------NATQVQHLSDLLN 95 (188)
T ss_dssp CSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCCCCT---------------TCEECSCHHHHHH
T ss_pred cccceEEEEeecc----------cchhhhhhhcccccceEeeccccccchhh---------------hhhhhhhHHHHHh
Confidence 4678999999984 56788999999999999999997542211 1244568889999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
.+|+++++.+... -+. +|-+.+ +.|++..+++-+.+ ++|.+.
T Consensus 96 ~sDii~i~~plt~~T~~li~~~~l-~~mk~~a~lIN~aRG~lvde~a 141 (188)
T d1sc6a1 96 MSDVVSLHVPENPSTKNMMGAKEI-SLMKPGSLLINASRGTVVDIPA 141 (188)
T ss_dssp HCSEEEECCCSSTTTTTCBCHHHH-HHSCTTEEEEECSCSSSBCHHH
T ss_pred hccceeecccCCcchhhhccHHHH-hhCCCCCEEEEcCcHHhhhhHH
Confidence 9999999876543 223 455444 45666666665543 455543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0075 Score=54.82 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=33.1
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
+..||+|||.|..|+..|..|++ .||+|++||++++-
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~---------------------------~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAA---------------------------RGHQVTLFDAHSEI 78 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEEESSSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHh---------------------------hccceEEEeccCcc
Confidence 45789999999999999999999 89999999997543
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.09 E-value=0.011 Score=49.92 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=31.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
..+|+|||.|++|.-+|..|++ .|.+|+++++++.
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~---------------------------~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATART---------------------------AGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESSSS
T ss_pred CCeEEEECcchhHHHHHHHhhc---------------------------ccceEEEEeeccc
Confidence 4689999999999999999999 7899999998653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.09 E-value=0.0088 Score=53.61 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=31.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~ 67 (598)
..||+|||.|..|+..|..|++ .|+ +|+++++++.-
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~---------------------------~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLAR---------------------------LGYSDITIFEKQEYV 40 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH---------------------------TTCCCEEEEESSSSC
T ss_pred CCEEEEECChHHHHHHHHHHHH---------------------------CCCCeEEEEEecCcc
Confidence 3689999999999999999999 888 59999987543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.07 E-value=0.0099 Score=49.64 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=30.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+|+|||.|++|.-+|..|+. .|.+|+++++.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~---------------------------~G~~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYAN---------------------------FGTKVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESSS
T ss_pred CeEEEECCCccceeeeeeecc---------------------------cccEEEEEEecc
Confidence 689999999999999999999 899999999864
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.00 E-value=0.0087 Score=55.84 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
+||+|||+|.-|+..|..|++ .|++|+++|.+
T Consensus 2 KkV~IIGaG~aGL~aA~~La~---------------------------~G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKI---------------------------HGLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHT---------------------------TSCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHh---------------------------CCCCEEEEeCC
Confidence 589999999999999999999 89999999875
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.99 E-value=0.038 Score=48.88 Aligned_cols=104 Identities=15% Similarity=0.086 Sum_probs=66.4
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccc---c-ccCCCceEecCChhhhc
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDP---E-LLDHNAVSILDDPYDTV 469 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~al 469 (598)
++||+|+|. .+.+..++..|.+.|++|.+||......+.......... . ...........++.+++
T Consensus 1 sk~iaIiGa----------G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 70 (184)
T d1bg6a2 1 SKTYAVLGL----------GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV 70 (184)
T ss_dssp CCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred CCEEEEECc----------cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence 479999997 478899999999999999999986432221111100000 0 00001223457788999
Q ss_pred cCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC
Q psy11160 470 KNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 470 ~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i 508 (598)
+++|.+|+++......+ -.+.+...+.+..+|+...+.
T Consensus 71 ~~aD~iii~v~~~~~~~-~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 71 KDADVILIVVPAIHHAS-IAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp TTCSEEEECSCGGGHHH-HHHHHGGGCCTTCEEEESSCC
T ss_pred cCCCEEEEEEchhHHHH-HHHHhhhccCCCCEEEEeCCC
Confidence 99999999997665433 334566666666677665554
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.98 E-value=0.031 Score=50.29 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=22.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcc
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQV 33 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~ 33 (598)
|+||+|+|+ ||+|.-+...|.. .|++.+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~-HP~~ei 29 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNR-HPHMTI 29 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH-CTTEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHh-CCCCce
Confidence 579999995 9999999999998 455443
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.94 E-value=0.011 Score=58.21 Aligned_cols=39 Identities=31% Similarity=0.327 Sum_probs=32.1
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|..++||+|||+|.-|+.+|..|++ .+.+++|++++++.
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~-------------------------~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLA-------------------------EKAFDQVTLFERRG 39 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHT-------------------------TTCCSEEEEECSSS
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHH-------------------------hCCCCCEEEEECCC
Confidence 5567899999999999999999987 11347999999864
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.87 E-value=0.056 Score=52.99 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=37.3
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+..++|.|.|. |++|+.++..|.+ +|++|++..|+..+.+.+.
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~---------------------------~G~~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLE---------------------------HGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHH
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHH---------------------------CcCEEEEEeCCchhHHHHH
Confidence 34578999975 9999999999999 8999999999988877665
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.87 E-value=0.0093 Score=54.07 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=29.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~ 64 (598)
+||+|||+|..|++.|..|++ +|+ +|++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~---------------------------~G~~~V~vlE~~ 33 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSE---------------------------AGITDLLILEAT 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHH---------------------------TTCCCEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHh---------------------------CCCCcEEEEECC
Confidence 489999999999999999999 785 79999875
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.014 Score=49.32 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=31.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
-.+++|||.|++|.-+|..|++ .|.+|+++++++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~---------------------------lG~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSR---------------------------LGSKVTVVEFQP 56 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSS
T ss_pred CCeEEEECCCchHHHHHHHHHh---------------------------hCcceeEEEecc
Confidence 3689999999999999999999 899999999854
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.86 E-value=0.011 Score=58.21 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.+||+|||+|.-|++.|..|++ .|++|++++.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k---------------------------~G~~V~viEk~ 34 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAE---------------------------KGHQVHIIDQR 34 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT---------------------------TTCEEEEEESS
T ss_pred CCEEEEECCcHHHHHHHHHHHh---------------------------CCCCEEEEECC
Confidence 4799999999999999999999 78999999975
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.012 Score=49.22 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.||.|||.|++|.-+|..|++ .|.+|+++++.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~---------------------------~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVING---------------------------LGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhc---------------------------cccEEEEEeecc
Confidence 589999999999999999999 799999999864
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.79 E-value=0.15 Score=44.77 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=76.8
Q ss_pred HHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCC-eEEEeCCCCChh-hhhhhhhcccccccCCCceE
Q psy11160 383 QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA-KLKIYDPKVEPS-QIIQDLKELDPELLDHNAVS 460 (598)
Q Consensus 383 ~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~-~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~ 460 (598)
++.+..+..+++++|+|+|. ...+..+++.|...|+ ++.++..-.... ++.+.+ +.+ ..
T Consensus 13 ~la~~~~~~l~~~~ilviGa----------G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~-------~~~--~~ 73 (159)
T d1gpja2 13 ELAERELGSLHDKTVLVVGA----------GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-------GGE--AV 73 (159)
T ss_dssp HHHHHHHSCCTTCEEEEESC----------CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-------TCE--EC
T ss_pred HHHHHHhCCcccCeEEEECC----------CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh-------hcc--cc
Confidence 44555566789999999996 2467889999999998 599998754322 222222 211 12
Q ss_pred ecCChhhhccCCCEEEEEeeccchhhccHHHHHhcc-----CCCcEEEecCC--CCChhhhhhccceeeeccch
Q psy11160 461 ILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM-----MKPAYIFDGRK--ILNHDALLDIGFNVHTVIDL 527 (598)
Q Consensus 461 ~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m-----~~~~iI~D~r~--i~d~~~~~~~G~~y~~v~~i 527 (598)
-..+..+++..+|+||.+|.-+++- ++.+.+...+ .+|.+|+|.-- -.|+.-.+..|+.+..+-.+
T Consensus 74 ~~~~~~~~l~~~Divi~atss~~~i-i~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~~v~l~~ld~l 146 (159)
T d1gpja2 74 RFDELVDHLARSDVVVSATAAPHPV-IHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDL 146 (159)
T ss_dssp CGGGHHHHHHTCSEEEECCSSSSCC-BCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEEEEHHHH
T ss_pred cchhHHHHhccCCEEEEecCCCCcc-ccHhhhHHHHHhcccCCCeEEEeecCCCCcChhhhccCCeEEEeHHHH
Confidence 2356777889999999999866542 2333333222 35679999731 23443333455555554433
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.76 E-value=0.011 Score=56.56 Aligned_cols=34 Identities=38% Similarity=0.496 Sum_probs=30.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
-.||+|||+|..|++.|..|++ .|++|+++|.++
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~---------------------------~G~~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAG---------------------------AGHQVTVLEASE 63 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHH---------------------------HTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEeCCC
Confidence 3589999999999999999999 899999999753
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.75 E-value=0.0049 Score=55.24 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.9
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++|+|||+|++|...+..|..
T Consensus 7 k~kv~iIG~G~~g~~h~~~l~~ 28 (172)
T d1lc0a1 7 KFGVVVVGVGRAGSVRLRDLKD 28 (172)
T ss_dssp SEEEEEECCSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCHHHHHHHHHHHh
Confidence 4789999999999988877765
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.64 E-value=0.016 Score=49.66 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=31.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
...+|+|||.|++|.-+|..|++ .|++|+++++++
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~---------------------------~g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIK---------------------------ANMHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHh---------------------------hCcceeeeeecc
Confidence 34789999999999999999999 789999999864
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.62 E-value=0.034 Score=52.79 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+.+||.|+|. |++|..++..|.+ .||+|++++|++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~---------------------------~G~~V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASIS---------------------------LGHPTYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHH---------------------------TTCCEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEEECCC
Confidence 5689999995 9999999999999 899999999863
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.015 Score=54.74 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
++..||+|||+|.-|++.|..|++ +|++|++++.+
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~---------------------------~G~~V~VlEa~ 37 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQS---------------------------FGMDVTLLEAR 37 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHH---------------------------TTCEEEEECSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEeCC
Confidence 455789999999999999999999 78888888764
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.58 E-value=0.0088 Score=57.24 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=31.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.+|+|||+|..|+.+|..|++ .|++|+++|++++.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~---------------------------~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHK---------------------------AGIDNVILERQTPD 37 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHH---------------------------HTCCEEEECSSCHH
T ss_pred CCEEEECcCHHHHHHHHHHHH---------------------------CCCCEEEEeCCCCC
Confidence 379999999999999999999 89999999998643
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.58 E-value=0.018 Score=48.67 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=31.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|+|||.|++|.-+|..|++ .|++|+++++++
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~---------------------------~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAK---------------------------AGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHhhc---------------------------cceEEEEEEecC
Confidence 4689999999999999999999 899999998864
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.55 E-value=0.056 Score=48.42 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=23.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceecc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVD 37 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~ 37 (598)
|.+|+|-|.|.+|..+.+.+.. .|++++..||
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~-~~di~vvaIn 32 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQ-QDDMKVIGVS 32 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHT-SSSEEEEEEE
T ss_pred CeEEEEEcCcHHHHHHHHHHHh-CCCceEEEEe
Confidence 4689999999999999998876 3444433333
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.52 E-value=0.014 Score=55.19 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=29.3
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.|.|||.|.+|+++|..|++ .|++|+++|++
T Consensus 6 DvvIIGaGi~Gls~A~~La~---------------------------~G~~V~vlE~~ 36 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAK---------------------------ENKNTALFESG 36 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------CCCcEEEEeCC
Confidence 49999999999999999999 89999999975
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.49 E-value=0.067 Score=47.52 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=35.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|.+|...+..+.. .|. .|++.|.++++.+..++
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~---------------------------~g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKV---------------------------CGASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHH---------------------------HTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCHHHhhhhhcccc---------------------------cccceeeeeccHHHHHHHHHH
Confidence 34689999999999999977766 454 67788999999998775
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.48 E-value=0.022 Score=51.56 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=25.1
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHHhCCCCccee
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIALKCPNIQVTV 35 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~ 35 (598)
.+..||+|+|+ ||+|.-+...|+. .|++++..
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~-HP~~ei~~ 35 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLAN-HPQFRIKV 35 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTT-CSSEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHh-CCCceEEE
Confidence 34579999997 9999999999997 45555433
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.43 E-value=0.015 Score=49.04 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+|+|||.|++|.-+|..|++ .|++|+++++++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~---------------------------~g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAE---------------------------AGYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHH---------------------------TTCEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHhhc---------------------------ccceEEEEeccc
Confidence 589999999999999999999 899999999864
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.40 E-value=0.014 Score=54.72 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.2
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
++|+|||+|..|+.+|..|++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~ 22 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQ 22 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHh
Confidence 589999999999999999999
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.069 Score=47.54 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=56.5
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||-+. ||.|+|..|.. .|..|+.++..
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~---------------------------~gatVt~~h~~------------------- 70 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLL---------------------------AGCTTTVTHRF------------------- 70 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHT---------------------------TTCEEEEECSS-------------------
T ss_pred cceEEEEeccccccHHHHHHHHH---------------------------hhccccccccc-------------------
Confidence 36899999977 99999999998 78899988642
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||++|.+++.|-.- . ...++++.+|++-.+.
T Consensus 71 --------------t~~l~~~~~~ADivI~a~G~p~~i---------~-----------~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 71 --------------TKNLRHHVENADLLIVAVGKPGFI---------P-----------GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp --------------CSCHHHHHHHCSEEEECSCCTTCB---------C-----------TTTSCTTCEEEECCCE
T ss_pred --------------cchhHHHHhhhhHhhhhccCcccc---------c-----------ccccCCCcEEEecCce
Confidence 234556788999999999876421 0 1246889999986654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.37 E-value=0.0027 Score=58.78 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.8
Q ss_pred ceEEEECCChhHHHHHHHHHHh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALK 27 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~ 27 (598)
|||+|||+|.+|+++|..|+++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 6999999999999999999993
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.34 E-value=0.014 Score=53.90 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=30.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
+||+|||.|.-|++.|..|++ ++.|++|++||..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~-------------------------~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLK-------------------------HHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-------------------------HCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHh-------------------------cCCCCeEEEEeCCCC
Confidence 699999999999999999987 225789999998753
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.31 E-value=0.018 Score=52.25 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=50.1
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce--EEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ--VTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
.+++|.|.| .|++|..++..|.+ .|++ |+...+++++...+..+...+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~---------------------------~g~~v~v~~~~R~~~~~~~~~~~~~~~~- 53 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKE---------------------------GSDKFVAKGLVRSAQGKEKIGGEADVFI- 53 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHH---------------------------TTTTCEEEEEESCHHHHHHTTCCTTEEE-
T ss_pred CCCEEEEECCccHHHHHHHHHHHH---------------------------CCCcEEEEEEcCCHHHHHhccCCcEEEE-
Confidence 368999999 59999999999999 6765 5556788988776654321111
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
-+ +.-..+..++++++|.||.+...
T Consensus 54 ~d------------~~~~~~~~~~~~~~d~vi~~a~~ 78 (252)
T d2q46a1 54 GD------------ITDADSINPAFQGIDALVILTSA 78 (252)
T ss_dssp CC------------TTSHHHHHHHHTTCSEEEECCCC
T ss_pred ee------------eccccccccccccceeeEEEEee
Confidence 00 00112345578899999888643
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.018 Score=51.85 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
++.--|+|||+|.-|+..|..|++ +|++|++++++
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~---------------------------~G~~V~vlE~~ 37 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSV---------------------------DGKKVLHIDKQ 37 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSS
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH---------------------------CCCCEEEEcCC
Confidence 334468999999999999999999 88999999986
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.24 E-value=0.047 Score=46.06 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=46.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCC--CCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPI--YEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~--~e~~~ 83 (598)
+||.|+|.|.+|..++..|. |++|+++|.++++.+.+.....++ .++.-
T Consensus 1 kHivI~G~g~~g~~l~~~L~-----------------------------~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~ 51 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR-----------------------------GSEVFVLAEDENVRKKVLRSGANFVHGDPTR 51 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC-----------------------------GGGEEEEESCTTHHHHHHHTTCEEEESCTTS
T ss_pred CEEEEECCCHHHHHHHHHHc-----------------------------CCCCEEEEcchHHHHHHHhcCccccccccCC
Confidence 47999999999999988764 467889999999999887432221 12222
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
++.+.+ .-+.+|+.++++.+
T Consensus 52 ~~~L~~-------------a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 52 VSDLEK-------------ANVRGARAVIVNLE 71 (129)
T ss_dssp HHHHHH-------------TTCTTCSEEEECCS
T ss_pred HHHHHH-------------hhhhcCcEEEEecc
Confidence 222211 12678999998854
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.19 E-value=0.027 Score=47.48 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=29.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.+++|||.|++|.-+|..|++ .|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~---------------------------lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAG---------------------------IGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhh---------------------------cCCeEEEEEec
Confidence 589999999999999999999 79999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.12 E-value=0.096 Score=45.65 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=36.3
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|.+|+..+..+.. .|.+|++++.++++.+.+++
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~---------------------------~g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKA---------------------------MGLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEeecccchhhhhHHHhc---------------------------CCCeEeccCCCHHHhhhhhh
Confidence 34689999999999877666555 78899999999999998875
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.11 Score=46.38 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=56.5
Q ss_pred ceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|+|||-+. ||.|+|..|+. .|..|+.++..
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~---------------------------~gatVt~~~~~-------------------- 72 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLW---------------------------NNATVTTCHSK-------------------- 72 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHH---------------------------TTCEEEEECTT--------------------
T ss_pred ceEEEEecCCccchHHHHHHHh---------------------------ccCceEEEecc--------------------
Confidence 6899999965 99999999999 78899998752
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||++|.+++.|-.-. ...++++.+|++-.+.
T Consensus 73 -------------t~~l~~~~~~aDivi~a~G~~~~i~--------------------~~~vk~g~iviDvgi~ 113 (170)
T d1a4ia1 73 -------------TAHLDEEVNKGDILVVATGQPEMVK--------------------GEWIKPGAIVIDCGIN 113 (170)
T ss_dssp -------------CSSHHHHHTTCSEEEECCCCTTCBC--------------------GGGSCTTCEEEECCCB
T ss_pred -------------cccHHHHHhhccchhhccccccccc--------------------cccccCCCeEeccCcc
Confidence 2344556889999999998774211 1357899999987654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.026 Score=47.64 Aligned_cols=33 Identities=12% Similarity=0.351 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+++|||.|++|.-+|..|+. .|.+|+++++++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~---------------------------~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSA---------------------------LGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhc---------------------------CCcEEEEEeecc
Confidence 589999999999999999999 899999999853
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.94 E-value=0.031 Score=46.77 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=30.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.+|+|||.|++|+-+|..|++ .|.+|+++.++
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~---------------------------~G~~Vtiv~~~ 54 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWAR---------------------------LGAEVTVLEAM 54 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESS
T ss_pred CeEEEECCChHHHHHHHHHHH---------------------------cCCceEEEEee
Confidence 689999999999999999999 89999999875
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.81 E-value=0.022 Score=54.70 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~ 64 (598)
.+|.|||+|.+|+++|..|++ .|+ +|+++|++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~---------------------------~G~~~V~liE~~ 34 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVT---------------------------RGWNNITVLDQG 34 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHH---------------------------TTCCCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHH---------------------------cCCCcEEEEeCC
Confidence 589999999999999999999 785 79999985
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=93.76 E-value=0.12 Score=46.42 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=51.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|.|.| .|.+|..+|..|++ .|.+|++++|+.++.+.+.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~---------------------------~G~~V~~~~r~~~~~~~~~~~---------- 66 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAG---------------------------EGAEVVLCGRKLDKAQAAADS---------- 66 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHHHH----------
T ss_pred CEEEEECCCHHHHHHHHHHHHh---------------------------hccchhhcccchHHHHHHHHH----------
Confidence 5778888 69999999999999 899999999999998876531
Q ss_pred HHHhhhcCCce----EEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNL----FFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~----~~~~~~~~~~~~adviii~v~t 117 (598)
+.......-. ....+.++++.++|++|-+.+.
T Consensus 67 -~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 67 -VNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAI 102 (191)
T ss_dssp -HHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCCT
T ss_pred -HHhccchhhhhhhcccHHHHHHHhcCcCeeeecCcc
Confidence 0000000001 1113455678899998887653
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.75 E-value=0.074 Score=47.33 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=65.5
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhh-hhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQ-IIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
.++|+|+|| ......+++.|.+.|++|.+||.-....+ +.+.. .............++.+++..+
T Consensus 2 ~~nIg~IGl----------G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~ 67 (176)
T d2pgda2 2 QADIALIGL----------AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE----AKGTKVLGAHSLEEMVSKLKKP 67 (176)
T ss_dssp CBSEEEECC----------SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT----TTTSSCEECSSHHHHHHHBCSS
T ss_pred CCcEEEEeE----------hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhc----cccccccchhhhhhhhhhhccc
Confidence 468999998 36788999999999999999997543221 11100 0000000112345667788889
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCC
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d 510 (598)
|.++++..+.+--.--.+.+...+.+..+|+|...+-.
T Consensus 68 ~~ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~ 105 (176)
T d2pgda2 68 RRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEY 105 (176)
T ss_dssp CEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred ceEEEecCchHHHHHHHHHHHhccccCcEEEecCcchh
Confidence 99998887765221123456666666679999987653
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.66 E-value=0.027 Score=50.44 Aligned_cols=79 Identities=10% Similarity=0.118 Sum_probs=52.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|.|+|+|-++.+++..|++ .| +|++++|+.++.+.+.+...........
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~---------------------------~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~ 69 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAK---------------------------DN-NIIIANRTVEKAEALAKEIAEKLNKKFG 69 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTS---------------------------SS-EEEEECSSHHHHHHHHHHHHHHHTCCHH
T ss_pred CCEEEEECCcHHHHHHHHHHcc---------------------------cc-ceeeehhhhhHHHHHHHHHHHhhchhhh
Confidence 3689999999999999888876 56 9999999999998875310000000000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTK 120 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~ 120 (598)
..+. ..++.....++|++|.|+|.+..
T Consensus 70 --------~~~~-~~~~~~~~~~~dliIn~tp~g~~ 96 (177)
T d1nvta1 70 --------EEVK-FSGLDVDLDGVDIIINATPIGMY 96 (177)
T ss_dssp --------HHEE-EECTTCCCTTCCEEEECSCTTCT
T ss_pred --------hhhh-hhhhhhccchhhhhccCCccccc
Confidence 0122 23444456789999999876543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.66 E-value=0.069 Score=47.82 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=23.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceecc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVD 37 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~ 37 (598)
.+||+|.|.|.+|..+...+.. .|++++..||
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~-~~dieiVaIN 33 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTK-QDDMELIGIT 33 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHT-CTTEEEEEEE
T ss_pred cEEEEEECCCHHHHHHHHHHHh-CCCceEEEEe
Confidence 4699999999999999998876 3444433333
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.63 E-value=0.023 Score=47.23 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+++|||.|++|.-+|..|++ .|++|+++++.+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~---------------------------~g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRK---------------------------LGAQVSVVEARE 54 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHH---------------------------HTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHhh---------------------------cccceEEEeeec
Confidence 689999999999999999999 789999998863
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.55 E-value=0.064 Score=46.97 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=36.5
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+...+|.|+|+|.+|+..+..+.. .|.+|+++|+++++.+..++
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~---------------------------~G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARA---------------------------MGLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeeccccHHHHHHHHHH---------------------------cCCccceecchhhHHHhhhc
Confidence 345689999999999887766666 78999999999999987654
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.44 E-value=0.025 Score=49.23 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=33.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEe--CCHHHHHHHHcC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVD--KSEERIRQWNSN 74 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d--~~~~~~~~~~~~ 74 (598)
++|.|||.|.+|..-|..|.+ .|-+|+++. .+++......++
T Consensus 14 krvLViGgG~va~~ka~~Ll~---------------------------~GA~VtVvap~~~~~l~~~~~~~ 57 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMP---------------------------TGCKLTLVSPDLHKSIIPKFGKF 57 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGG---------------------------GTCEEEEEEEEECTTHHHHHCGG
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCCCHHHHHHHHhc
Confidence 689999999999999999999 789999995 345444433333
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.39 E-value=0.02 Score=48.38 Aligned_cols=33 Identities=36% Similarity=0.469 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+++|||.|++|+-+|..|+. .|.+|+++.+++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~---------------------------~G~~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGR---------------------------IGSEVTVVEFAS 58 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHH---------------------------HTCEEEEECSSS
T ss_pred CeEEEEccchHHHHHHHHHHh---------------------------cCCeEEEEEEcc
Confidence 589999999999999999999 799999998864
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.35 E-value=0.037 Score=49.89 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=20.3
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
|||+|||.|+.|..+|..|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~ 21 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLN 21 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHh
Confidence 699999999999999999998
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.29 E-value=0.09 Score=45.51 Aligned_cols=90 Identities=14% Similarity=0.132 Sum_probs=61.6
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAI 475 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adal 475 (598)
||+|+|+ ......+++.|.+.|++|.+||..-......... ......++.++++++|++
T Consensus 2 kIgiIG~----------G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~e~~~~~diI 60 (152)
T d1i36a2 2 RVGFIGF----------GEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR-----------TVGVTETSEEDVYSCPVV 60 (152)
T ss_dssp EEEEESC----------SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----------HHTCEECCHHHHHTSSEE
T ss_pred EEEEEcH----------HHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh-----------cccccccHHHHHhhcCeE
Confidence 7999997 3678899999999999999999765544322110 123457789999999999
Q ss_pred EEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 476 VVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 476 ii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
++++..+...+. ...+... ...+++|...+.
T Consensus 61 i~~v~~~~~~~~-~~~~~~~--~~~~~id~st~~ 91 (152)
T d1i36a2 61 ISAVTPGVALGA-ARRAGRH--VRGIYVDINNIS 91 (152)
T ss_dssp EECSCGGGHHHH-HHHHHTT--CCSEEEECSCCC
T ss_pred EEEecCchHHHH-HHhhccc--CCceeeccCcCC
Confidence 999987764332 1122222 134788876653
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.26 E-value=0.035 Score=51.66 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
+..+|+|||.|.-|+..|..|++ .|++|++++.+.+-
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~---------------------------~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLME---------------------------SGYTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSSST
T ss_pred CCceEEEEcccHHHHHHHHHHHH---------------------------hccceeeEeecccc
Confidence 34789999999999999999999 89999999987543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.082 Score=46.51 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=35.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|.+|+..+..+.. .|.+++++|.++++.+.+++
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~---------------------------~Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHA---------------------------MGAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEEESSGGGHHHHHH
T ss_pred CCCEEEEeccchHHHHHHHHhhc---------------------------ccccchhhccchhHHHHHhc
Confidence 34689999999999887766666 78899999999998876654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.21 E-value=0.036 Score=46.05 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=30.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
-++|+|||.|++|.-+|..|+. .|.+|+++++++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~---------------------------~g~~vt~i~~~~ 55 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNA---------------------------TGRRTVMLVRTE 55 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------cchhheEeeccc
Confidence 3689999999999999999999 789999999864
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.11 Score=46.41 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=49.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|.|+|+|-+|.+++..|++ .| .++++++|++++.+++..- .
T Consensus 19 k~vlIlGaGGaarai~~al~~---------------------------~g~~~i~i~nR~~~~~~~~~~l---------~ 62 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAI---------------------------EGLKEIKLFNRRDEFFDKALAF---------A 62 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEEECSSTTHHHHHHH---------H
T ss_pred CEEEEECCcHHHHHHHHHHhh---------------------------cCCceEeeeccchHHHHHHHHH---------H
Confidence 689999999999999999999 45 4899999987766553320 0
Q ss_pred HHHhhhcCCceEEe-----cCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFS-----TDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~-----~~~~~~~~~adviii~v~tp 118 (598)
+-+..........+ .+..+.+.++|+||-|+|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~Tp~G 101 (182)
T d1vi2a1 63 QRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVG 101 (182)
T ss_dssp HHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTT
T ss_pred HHHHhhcCcceEeeecccccchhhhhcccceeccccCCc
Confidence 00111001111111 12344578999999997654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.026 Score=54.84 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=29.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
|..|.|||+|..|+++|..|++ .|++|++++.+
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~---------------------------~g~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKK---------------------------LNKKVLVIEKR 33 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGG---------------------------GTCCEEEECSS
T ss_pred CccEEEECCcHHHHHHHHHHHh---------------------------CCCcEEEEECC
Confidence 3579999999999999999998 78888888874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.05 E-value=0.13 Score=46.77 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=34.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|.+|+..+..... .| ..|+++|.+++|.+..++
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~---------------------------~ga~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARL---------------------------LGAAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHh---------------------------hcccceeeecccchhhHhhhh
Confidence 34689999999999777666555 34 489999999999998775
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.05 E-value=0.067 Score=50.20 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=38.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.++|+|-|.|.||..+|..|.+ .|..|++.|.+...++.+..
T Consensus 39 g~~v~IqG~GnVG~~~a~~L~~---------------------------~Gakvv~~d~~~~~~~~~~~ 80 (230)
T d1leha1 39 GLAVSVQGLGNVAKALCKKLNT---------------------------EGAKLVVTDVNKAAVSAAVA 80 (230)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEeecccHHHHHHHHH
Confidence 3689999999999999999999 89999999999999887653
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.07 Score=42.41 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=48.2
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++++|||+|+|+. -..+.+++.|.+.|++|.++|.....+... .++ .+. .+.+.......+.
T Consensus 2 ~~~~K~v~ViGlG----------~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~-~~~-----~~~--~~~~~~~~~~~~~ 63 (93)
T d2jfga1 2 DYQGKNVVIIGLG----------LTGLSCVDFFLARGVTPRVMDTRMTPPGLD-KLP-----EAV--ERHTGSLNDEWLM 63 (93)
T ss_dssp CCTTCCEEEECCS----------HHHHHHHHHHHHTTCCCEEEESSSSCTTGG-GSC-----TTS--CEEESBCCHHHHH
T ss_pred CcCCCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEeeCCcCchhHH-HHh-----hcc--ceeecccchhhhc
Confidence 4689999999983 246788999999999999999866543221 111 111 1222223345567
Q ss_pred CCCEEEEEeecc
Q psy11160 471 NTHAIVVCTEWD 482 (598)
Q Consensus 471 ~adalii~t~~~ 482 (598)
++|.+|+....+
T Consensus 64 ~~d~vi~SPGi~ 75 (93)
T d2jfga1 64 AADLIVASPGIA 75 (93)
T ss_dssp HCSEEEECTTSC
T ss_pred cCCEEEECCCCC
Confidence 788888876554
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.92 E-value=0.22 Score=48.45 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR 69 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~ 69 (598)
|+.++|.|+|+ |++|..++..|.+ .||+|+++.|++.+..
T Consensus 1 ~~kktIlVtGatG~iG~~lv~~Ll~---------------------------~G~~V~~l~R~~~~~~ 41 (350)
T d1xgka_ 1 QQKKTIAVVGATGRQGASLIRVAAA---------------------------VGHHVRAQVHSLKGLI 41 (350)
T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHH---------------------------TTCCEEEEESCSCSHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHh---------------------------CCCeEEEEECCcchhh
Confidence 45678999995 9999999999999 8999999998765543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.83 E-value=0.04 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.6
Q ss_pred ceEEEECCChhHHHHHHHHHHh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALK 27 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~ 27 (598)
+||.|||.|+.|..+|..|.+.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~ 24 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLA 24 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CcEEEECccHHHHHHHHHHHHc
Confidence 6999999999999999999984
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=92.59 E-value=0.16 Score=44.10 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=62.6
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAI 475 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adal 475 (598)
||+++|+ ......+++.|.+.|+.+.++|..-........ ++ . ..+..+.+.++|.+
T Consensus 2 kIg~IGl----------G~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~--------~~----~-~~~~~~~~~~~~~~ 58 (156)
T d2cvza2 2 KVAFIGL----------GAMGYPMAGHLARRFPTLVWNRTFEKALRHQEE--------FG----S-EAVPLERVAEARVI 58 (156)
T ss_dssp CEEEECC----------STTHHHHHHHHHTTSCEEEECSSTHHHHHHHHH--------HC----C-EECCGGGGGGCSEE
T ss_pred eEEEEeH----------HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHH--------cC----C-cccccccccceeEE
Confidence 7999998 368899999999999988877764333222221 11 1 23445777788988
Q ss_pred EEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 476 VVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 476 ii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
+++...++--..-...+...+.+..+++|...+-
T Consensus 59 i~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~ 92 (156)
T d2cvza2 59 FTCLPTTREVYEVAEALYPYLREGTYWVDATSGE 92 (156)
T ss_dssp EECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred EecccchhhhhhhhccccccccccccccccccCC
Confidence 8887776533333456777777778999988764
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.56 E-value=0.15 Score=44.18 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=62.8
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChh-hhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPS-QIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
||+|+|. ...+-.|++.|.+.|.++.+|++..... ++.+.+ ++....++.++++.+|+
T Consensus 2 kIg~IG~----------G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-----------g~~~~~~~~~~~~~~dv 60 (152)
T d2ahra2 2 KIGIIGV----------GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------ALPYAMSHQDLIDQVDL 60 (152)
T ss_dssp EEEEECC----------SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------TCCBCSSHHHHHHTCSE
T ss_pred EEEEEec----------cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-----------ceeeechhhhhhhccce
Confidence 6899886 3577889999999999999999754322 122211 23566789999999999
Q ss_pred EEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhh
Q psy11160 475 IVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALL 515 (598)
Q Consensus 475 lii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~ 515 (598)
|++++....+. .+.+.+.+..+|++.-.-+..+.++
T Consensus 61 Iilavkp~~~~-----~vl~~l~~~~~iis~~agi~~~~l~ 96 (152)
T d2ahra2 61 VILGIKPQLFE-----TVLKPLHFKQPIISMAAGISLQRLA 96 (152)
T ss_dssp EEECSCGGGHH-----HHHTTSCCCSCEEECCTTCCHHHHH
T ss_pred eeeecchHhHH-----HHhhhcccceeEecccccccHHHHH
Confidence 99999765443 3334444455666655544443333
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.15 Score=50.15 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=27.6
Q ss_pred ceEE-EEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHIC-CIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~-viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+||+ |.| .|++|..++..|.+ .|++|+++|+..
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~---------------------------~g~~V~~~~r~~ 35 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLE---------------------------KGYEVHGIKRRA 35 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEECC--
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---------------------------CcCEEEEEECCC
Confidence 3666 667 79999999999999 899999999843
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.51 E-value=0.044 Score=51.78 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=28.7
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
-|+|||.|.+|+++|..|++ +|++|+++|+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~---------------------------~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAK---------------------------QGVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------CCCcEEEEeCC
Confidence 48999999999999999999 89999999973
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.046 Score=52.29 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=27.9
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
|+|||+|..|++.|..|++ .|++|++++.+
T Consensus 2 ViVIGaG~aGL~aA~~L~~---------------------------~G~~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHD---------------------------SGLNVVVLEAR 31 (383)
T ss_dssp EEEECCBHHHHHHHHHHHH---------------------------TTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEecC
Confidence 7999999999999999999 88999999874
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.38 E-value=0.065 Score=52.72 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=31.6
Q ss_pred CCCCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 2 VQTISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 2 ~~~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
|.+.|||.|.| .|++|..++..|.+ .||+|+++|+.
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~---------------------------~g~~V~~~d~~ 48 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKH---------------------------EGHYVIASDWK 48 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHH---------------------------CcCEEEEEeCC
Confidence 34568999997 69999999999999 89999999964
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.27 E-value=0.18 Score=41.23 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=53.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecC--Chhhh
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILD--DPYDT 468 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a 468 (598)
++++++|+|+|.. .-+..-++.|.+.|++|.+++|...++.... .. .+ .+.+.. ...+.
T Consensus 9 ~l~~k~vlVvG~G----------~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~-~~-----~~---~i~~~~~~~~~~d 69 (113)
T d1pjqa1 9 QLRDRDCLIVGGG----------DVAERKARLLLEAGARLTVNALTFIPQFTVW-AN-----EG---MLTLVEGPFDETL 69 (113)
T ss_dssp CCBTCEEEEECCS----------HHHHHHHHHHHHTTBEEEEEESSCCHHHHHH-HT-----TT---SCEEEESSCCGGG
T ss_pred EeCCCEEEEECCC----------HHHHHHHHHHHHCCCeEEEEeccCChHHHHH-Hh-----cC---CceeeccCCCHHH
Confidence 4689999999973 4678899999999999999999887653321 10 11 122222 22346
Q ss_pred ccCCCEEEEEeeccchh
Q psy11160 469 VKNTHAIVVCTEWDEFV 485 (598)
Q Consensus 469 l~~adalii~t~~~~f~ 485 (598)
+++++.++++|..++..
T Consensus 70 l~~~~lv~~at~d~~~n 86 (113)
T d1pjqa1 70 LDSCWLAIAATDDDTVN 86 (113)
T ss_dssp GTTCSEEEECCSCHHHH
T ss_pred hCCCcEEeecCCCHHHH
Confidence 78899999999987753
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.12 E-value=0.061 Score=45.42 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=30.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++.|||.|++|.-+|..|+. .|.+|+++++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~---------------------------~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYST---------------------------LGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHH---------------------------HTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhc---------------------------CCCEEEEEEeec
Confidence 689999999999999999999 799999998853
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.05 E-value=0.065 Score=47.26 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=35.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|.+|+..+..+.. .|.+|+++|+++++.+..++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~---------------------------~G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKA---------------------------MGAETYVISRSSRKREDAMK 69 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------HTCEEEEEESSSTTHHHHHH
T ss_pred CCCEEEEECCCCcchhHHHHhhh---------------------------ccccccccccchhHHHHhhc
Confidence 34689999999999887665555 68899999999999987764
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.92 E-value=0.013 Score=47.92 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHH
Q psy11160 329 VSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESL 388 (598)
Q Consensus 329 ~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~ 388 (598)
-+|++|.+.|..+ ...++| .|++..+|++.|++ +.++++.+
T Consensus 3 eAE~~K~~~N~fl------a~kIsf--------~Ne~~~lc~~~g~d-----~~~v~~~~ 43 (98)
T d1dlja1 3 EAEAVKLFANTYL------ALRVAY--------FNELDTYAESRKLN-----SHMIIQGI 43 (98)
T ss_dssp HHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHTTCC-----HHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHhhcc-----HHHHHHHH
Confidence 3689999987654 456788 99999999999998 34555554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.58 E-value=0.39 Score=42.12 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=37.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|-+|+..+..++. .| ..|++.|++++|.+...+
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~---------------------------~g~~~Vi~~~~~~~k~~~a~~ 71 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKA---------------------------AGAARIIGVDINKDKFAKAKE 71 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHH---------------------------cCCceEEeecCcHHHHHHHHH
Confidence 34679999999999999988888 45 699999999999998775
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=91.47 E-value=0.058 Score=50.53 Aligned_cols=37 Identities=30% Similarity=0.268 Sum_probs=32.5
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
++...|.|||+|..|+..|..+++ .|++|+++|+++.
T Consensus 2 ~~~~DViIIGaG~aGl~aA~~la~---------------------------~G~~V~vlEk~~~ 38 (253)
T d2gqfa1 2 SQYSENIIIGAGAAGLFCAAQLAK---------------------------LGKSVTVFDNGKK 38 (253)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSSS
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH---------------------------CCCcEEEEecCCC
Confidence 334579999999999999999999 8999999999754
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.38 E-value=0.058 Score=50.58 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=29.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
|||.|.|+ |++|..++..|.. .||+|+++|++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~---------------------------~g~~Vi~~~r~ 34 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKG---------------------------KNVEVIPTDVQ 34 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTT---------------------------SSEEEEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEeech
Confidence 79999997 9999999999998 89999999985
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.34 E-value=0.22 Score=43.70 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=35.8
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~ 73 (598)
....|.|+|+|.+|+..+..+.. .| ..|+++|+++++.+.+++
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~---------------------------~g~~~vv~~~~~~~k~~~~~~ 75 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKV---------------------------MTPATVIALDVKEEKLKLAER 75 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------HCCCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHh---------------------------hcCcccccccchhHHHHHHhh
Confidence 34679999999999998877766 34 688999999999998875
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=91.19 E-value=0.061 Score=52.30 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=31.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
-.|+|||+|.-|+.+|..|.+ .|++|+++|++++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~---------------------------~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRE---------------------------LGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHh---------------------------CCCCEEEEEcCCC
Confidence 369999999999999999999 8999999998754
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=91.15 E-value=0.079 Score=48.93 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=30.2
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.|.|||+|..|+..|..|++ .|++|+++|+++.
T Consensus 4 DViIIGaG~aGl~aA~~la~---------------------------~G~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAE---------------------------EGANVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------CCCcEEEEeCCCC
Confidence 58999999999999999999 8999999998643
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.00 E-value=0.055 Score=49.54 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=34.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP 77 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~ 77 (598)
.||+|||+|.-|++.|..|++. |.++. ..|++|++||.++.-=-.+..+..|
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~---------------G~~~~-----~~~~~V~v~E~~~~~GG~~~~gi~p 54 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKA---------------ADTTE-----DLDMAVDMLEMLPTPWGLVRSGVAP 54 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH---------------HHHST-----TCCEEEEEEESSSSCSTHHHHTSCT
T ss_pred cEEEEECcCHHHHHHHHHHHHc---------------CCccc-----cCCCceEEEecCCCCCCeeeeccCc
Confidence 4899999999999999999981 00011 1347899999875432233344434
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.98 E-value=0.059 Score=52.13 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.0
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
--|.|||+|.+|+.+|..|++
T Consensus 8 yDV~IvGaG~aGl~lA~~La~ 28 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSE 28 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHh
Confidence 359999999999999999984
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=90.85 E-value=0.091 Score=49.15 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+.+||.|+|+ |++|..++..|.+ .||+|++++|++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~---------------------------~G~~V~~l~R~~ 37 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLD---------------------------LGHPTFLLVRES 37 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHH---------------------------TTCCEEEECCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---------------------------CCCeEEEEECCC
Confidence 4579999997 9999999999999 899999999863
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.70 E-value=0.62 Score=43.52 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=34.0
Q ss_pred eEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
||++| |.+-+|..+|..|++ .|++|+++|+++++++++.
T Consensus 3 KValITGas~GIG~aia~~la~---------------------------~Ga~V~i~~r~~~~l~~~~ 43 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGK---------------------------EGLRVFVCARGEEGLRTTL 43 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 77777 557799999999999 8999999999999888755
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.65 E-value=0.081 Score=46.26 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
-||+|||+ ||+|.-+...|++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~ 23 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEE 23 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHT
T ss_pred CEEEEECCCcHHHHHHHHHHHc
Confidence 38999999 9999999998887
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.65 E-value=0.14 Score=42.30 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=30.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
..||+|+|.|-.|.-||....+ -|++|+++|.+++
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~---------------------------lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQR---------------------------LGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHT---------------------------TTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCCC
Confidence 3689999999999999998777 8999999998643
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.53 E-value=2.5 Score=39.07 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=32.2
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.+.|.|. +-+|..+|..|++ .|++|++.|+++++.+...
T Consensus 7 ~~lITGas~GIG~aia~~la~---------------------------~Ga~V~i~~r~~~~~~~~~ 46 (251)
T d1vl8a_ 7 VALVTGGSRGLGFGIAQGLAE---------------------------AGCSVVVASRNLEEASEAA 46 (251)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 3445555 6799999999999 8999999999998877644
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=90.51 E-value=0.29 Score=41.95 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCeEEEEe-ccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 394 DKHIAILG-FAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 394 ~~~V~ilG-lafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
-+||+|+| +. ...-.+++.|.+.|++|.+||..... ...+.++++
T Consensus 9 ~~kI~iIGg~G----------~mG~~la~~L~~~G~~V~~~d~~~~~------------------------~~~~~~~~~ 54 (152)
T d2pv7a2 9 IHKIVIVGGYG----------KLGGLFARYLRASGYPISILDREDWA------------------------VAESILANA 54 (152)
T ss_dssp CCCEEEETTTS----------HHHHHHHHHHHTTTCCEEEECTTCGG------------------------GHHHHHTTC
T ss_pred CCeEEEEcCCC----------HHHHHHHHHHHHcCCCcEeccccccc------------------------ccchhhhhc
Confidence 47999999 73 46778999999999999999975321 233556788
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i 508 (598)
|.++++++=..... -...+...+.+..+|+|...+
T Consensus 55 ~~v~~~~~~~~~~~-v~~~~~~~~~~~~iiiD~~Sv 89 (152)
T d2pv7a2 55 DVVIVSVPINLTLE-TIERLKPYLTENMLLADLTSV 89 (152)
T ss_dssp SEEEECSCGGGHHH-HHHHHGGGCCTTSEEEECCSC
T ss_pred cccccccchhhhee-eeecccccccCCceEEEeccc
Confidence 98888887665443 234556666667799998765
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.43 E-value=0.79 Score=42.76 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=56.6
Q ss_pred ceEEEE-CC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCI-GA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~vi-G~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||++| |. +-+|..+|..|++ .|++|++.|+++++++.+.+.
T Consensus 1 KKValITGas~GIG~aia~~la~---------------------------~Ga~V~~~~r~~~~l~~~~~~--------- 44 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVK---------------------------DGFAVAIADYNDATAKAVASE--------- 44 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHH---------
T ss_pred CCEEEEcCCccHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHH---------
Confidence 477766 54 6799999999999 899999999999988765531
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+.+ ...+++.+. .+. .|.+.+++.++.+.+...+=.++|...
T Consensus 45 -----------------i~~--~g~~~~~~~--~Dv----------~~~~~v~~~~~~~~~~~g~iDilVnnA 86 (255)
T d1gega_ 45 -----------------INQ--AGGHAVAVK--VDV----------SDRDQVFAAVEQARKTLGGFDVIVNNA 86 (255)
T ss_dssp -----------------HHH--TTCCEEEEE--CCT----------TSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred -----------------HHh--cCCcEEEEE--eeC----------CCHHHHHHHHHHHHHHhCCccEEEecc
Confidence 010 112333333 232 244577888888877776656676543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.31 E-value=0.28 Score=42.77 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=35.5
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~ 73 (598)
..+|.|+|+ |.+|...+..+.. .| .+|+++|+++++.+.+++
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~---------------------------~g~~~V~~~~~~~~~~~~~~~ 71 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKA---------------------------VSGATIIGVDVREEAVEAAKR 71 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHH---------------------------HTCCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEEeccccceeeeeecccc---------------------------cccccccccccchhhHHHHHH
Confidence 458999995 9999988877777 45 599999999999998875
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=90.29 E-value=0.18 Score=48.78 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=31.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQ 70 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~ 70 (598)
|||.|.|+ |++|..++..|.+ .| ++|+++|+.......
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~---------------------------~g~~~V~~ld~~~~~~~~ 40 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLR---------------------------EDHYEVYGLDIGSDAISR 40 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHH---------------------------STTCEEEEEESCCGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHH---------------------------CCCCEEEEEeCCCcchhh
Confidence 68999976 9999999999988 67 589999987554443
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.12 E-value=0.14 Score=42.20 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=28.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.+|+|||.|++|.-+|..|.. |...|.+|+++++.
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~------------------------l~~~~~~Vtli~~~ 55 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNA------------------------YKPKDGQVTLCYRG 55 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHH------------------------HCCTTCEEEEEESS
T ss_pred CeEEEECCcHHHHHHHHHhhh------------------------cccCCcEEEEEecc
Confidence 589999999999999988876 12256789999874
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=2.2 Score=39.49 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=32.9
Q ss_pred eEEEE-CC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI-GA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi-G~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| |. +-+|..+|..|++ .|.+|++.|+++++.++..
T Consensus 4 KvalITGas~GIG~aia~~la~---------------------------~Ga~V~i~~r~~~~~~~~~ 44 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLL---------------------------KGAKVALVDWNLEAGVQCK 44 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 45555 55 7799999999999 8999999999999887655
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.95 E-value=0.15 Score=41.89 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=29.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.+|+|||.|++|.-+|..|+. |+..|.+|++++++
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~------------------------~~~~g~~Vtli~~~ 53 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNA------------------------YKARGGQVDLAYRG 53 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHH------------------------HSCTTCEEEEEESS
T ss_pred CeEEEECCChHHHHHHHHhHh------------------------hcccccccceeccc
Confidence 689999999999999998876 12257899999875
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=89.85 E-value=0.14 Score=49.88 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=28.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK 63 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 63 (598)
|||.|+|. |++|..++..|.+ .|++|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~---------------------------~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQ---------------------------NGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHH---------------------------CcCEEEEEEC
Confidence 68999975 9999999999999 8999999986
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.78 E-value=0.097 Score=45.30 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.1
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
+||+|||.|+.|.-+|..|++
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~ 21 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ 21 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT
T ss_pred CeEEEECCcHHHHHHHHHHHc
Confidence 489999999999999998865
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.64 E-value=0.35 Score=42.93 Aligned_cols=103 Identities=11% Similarity=0.169 Sum_probs=66.8
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhccc----ccccCCCceEecCChhhhccC
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELD----PELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~al~~ 471 (598)
+|+|+|. .+-+..++..|...|.+|.+|......+.+..--.... +.......+....|..+++++
T Consensus 2 kI~ViGa----------G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 71 (180)
T d1txga2 2 IVSILGA----------GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN 71 (180)
T ss_dssp EEEEESC----------CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT
T ss_pred EEEEECC----------CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhc
Confidence 6889886 46778899999999999999854333222111000000 001112245667888999999
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
+|++|+++....+++. ++++.....+..+|+-++++.
T Consensus 72 ad~Ii~avps~~~~~~-~~~l~~~l~~~~ii~~tkg~~ 108 (180)
T d1txga2 72 AEVVLLGVSTDGVLPV-MSRILPYLKDQYIVLISKGLI 108 (180)
T ss_dssp CSEEEECSCGGGHHHH-HHHHTTTCCSCEEEECCCSEE
T ss_pred cchhhcccchhhhHHH-HHhhccccccceecccccCcc
Confidence 9999999998777653 455665555566777667664
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=89.59 E-value=0.18 Score=44.44 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.0
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHH
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~ 26 (598)
+..+||+|+|+ |.||..++..+..
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~ 26 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALA 26 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHh
Confidence 35689999995 9999999998877
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=89.56 E-value=3.2 Score=38.45 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=34.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+++.|.| .+-+|..+|..|++ .|++|++.++++++++.+.
T Consensus 7 K~alITGas~GIG~aia~~la~---------------------------~G~~V~i~~r~~~~l~~~~ 47 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAG---------------------------LGARVYTCSRNEKELDECL 47 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 4566777 57799999999999 8999999999998877654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.27 E-value=0.23 Score=44.08 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=36.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~ 73 (598)
...|.|+|+|-+|+..+..+.. .| .+|+++|++++|.+..++
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~---------------------------~G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKS---------------------------AGASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEECSCGGGHHHHHH
T ss_pred CCEEEEECCCchhHHHHHHHHH---------------------------cCCceEEEecCcHHHHHHHHh
Confidence 4579999999999999988888 66 589999999999987664
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=89.24 E-value=0.64 Score=43.77 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=60.9
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++|.=+|||.-. ++..+++ .|.+|+++|+|++.++..+++..
T Consensus 120 ~g~~VLDiGcGsG~--l~i~aa~---------------------------~g~~V~gvDis~~av~~A~~na~------- 163 (254)
T d2nxca1 120 PGDKVLDLGTGSGV--LAIAAEK---------------------------LGGKALGVDIDPMVLPQAEANAK------- 163 (254)
T ss_dssp TTCEEEEETCTTSH--HHHHHHH---------------------------TTCEEEEEESCGGGHHHHHHHHH-------
T ss_pred ccCEEEEcccchhH--HHHHHHh---------------------------cCCEEEEEECChHHHHHHHHHHH-------
Confidence 44689999999743 3445677 68899999999999987664210
Q ss_pred HHHHhhhcCCceEEecCHHHHh--ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAI--QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
...... -....+..+.+ ...|+|+.... ...+.+.++.+.+.++|+-.++.
T Consensus 164 ----~n~~~~-~~~~~d~~~~~~~~~fD~V~ani~---------------~~~l~~l~~~~~~~LkpGG~lil 216 (254)
T d2nxca1 164 ----RNGVRP-RFLEGSLEAALPFGPFDLLVANLY---------------AELHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp ----HTTCCC-EEEESCHHHHGGGCCEEEEEEECC---------------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----HcCCce-eEEeccccccccccccchhhhccc---------------cccHHHHHHHHHHhcCCCcEEEE
Confidence 000011 23345554444 35688765431 12466777889999999877765
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.05 E-value=1.5 Score=40.76 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=33.6
Q ss_pred eEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| |.+-+|..+|..|++ .|++|+++++++++++++.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~---------------------------~G~~Vv~~~r~~~~l~~~~ 51 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQ---------------------------QGLKVVGCARTVGNIEELA 51 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 55555 558899999999999 8999999999999988765
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=2.5 Score=38.98 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=56.8
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.+.|.|+ +-+|..+|..|++ .|.+|+++|+++++++.+.+.
T Consensus 9 v~lITGas~GIG~~ia~~la~---------------------------~G~~V~l~~r~~~~l~~~~~~----------- 50 (244)
T d1yb1a_ 9 IVLITGAGHGIGRLTAYEFAK---------------------------LKSKLVLWDINKHGLEETAAK----------- 50 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHH-----------
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHH-----------
Confidence 3444466 4599999999999 899999999999998876531
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+.+ ....+.++. ++. .|.+.+++.++.+.+....-.++|...-+
T Consensus 51 ---------------~~~--~~~~~~~~~--~Dv----------s~~~~v~~~~~~i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 51 ---------------CKG--LGAKVHTFV--VDC----------SNREDIYSSAKKVKAEIGDVSILVNNAGV 94 (244)
T ss_dssp ---------------HHH--TTCCEEEEE--CCT----------TCHHHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred ---------------HHh--cCCcEEEEE--eeC----------CCHHHHHHHHHHHHHHcCCCceeEeeccc
Confidence 110 123344333 232 24456788888887777666676665444
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=1.6 Score=38.44 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=57.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++++++|.|+|=+ +--..+|+..|.++|++|...+-.. .++.+.++
T Consensus 36 ~l~Gk~vvVIGrS---------~iVGrPLa~lL~~~gatVt~~~~~t-------------------------~~l~~~~~ 81 (170)
T d1a4ia1 36 PIAGRHAVVVGRS---------KIVGAPMHDLLLWNNATVTTCHSKT-------------------------AHLDEEVN 81 (170)
T ss_dssp CCTTCEEEEECCC---------TTTHHHHHHHHHHTTCEEEEECTTC-------------------------SSHHHHHT
T ss_pred ccccceEEEEecC---------CccchHHHHHHHhccCceEEEeccc-------------------------ccHHHHHh
Confidence 4689999999942 2346789999999999999977532 34566788
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r 506 (598)
.||++|.++..+++-..+| .++..+|+|.-
T Consensus 82 ~aDivi~a~G~~~~i~~~~------vk~g~iviDvg 111 (170)
T d1a4ia1 82 KGDILVVATGQPEMVKGEW------IKPGAIVIDCG 111 (170)
T ss_dssp TCSEEEECCCCTTCBCGGG------SCTTCEEEECC
T ss_pred hccchhhcccccccccccc------ccCCCeEeccC
Confidence 9999999999999865443 23445899985
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.40 E-value=5.1 Score=36.51 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=33.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+++.|.|. +-+|..+|..|++ .|++|++.++|.+++++..+
T Consensus 6 K~alItGas~GIG~aia~~l~~---------------------------~G~~V~~~~r~~~~~~~~~~ 47 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAR---------------------------EGASLVAVDREERLLAEAVA 47 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHH
Confidence 34555566 5699999999999 89999999999998876553
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.39 E-value=0.13 Score=44.98 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=21.2
Q ss_pred CCceEEEECCChhHHHHHHHHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~ 26 (598)
...+|.|||.|+.|.-+|..|++
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~ 24 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRA 24 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHH
Confidence 34689999999999999999999
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.37 E-value=0.73 Score=39.84 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=59.7
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCC--eEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA--KLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
++|+|+|+. .-.-.+++.|.+.|. +|..||+.....+..... +.- ..............+
T Consensus 2 k~I~IIG~G----------~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~-------~~~-~~~~~~~~~~~~~~~ 63 (171)
T d2g5ca2 2 QNVLIVGVG----------FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-------GII-DEGTTSIAKVEDFSP 63 (171)
T ss_dssp CEEEEESCS----------HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-------TSC-SEEESCGGGGGGTCC
T ss_pred CEEEEEccC----------HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh-------hcc-hhhhhhhhhhhcccc
Confidence 479999873 456678999999985 688899864322221111 100 112222233344578
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
|.++++++-..+.+. +..+...+.+..+|+|...+-
T Consensus 64 dlIila~p~~~~~~v-l~~l~~~~~~~~ii~d~~s~k 99 (171)
T d2g5ca2 64 DFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVK 99 (171)
T ss_dssp SEEEECSCHHHHHHH-HHHHHHHSCTTCEEEECCSCC
T ss_pred ccccccCCchhhhhh-hhhhhcccccccccccccccc
Confidence 999999987665442 245666666667999988764
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.24 E-value=2.1 Score=37.33 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=64.4
Q ss_pred HHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecC
Q psy11160 384 LYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILD 463 (598)
Q Consensus 384 ~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (598)
+.+...-.+.+|+|+|+|... -...+++.|...|++|.+||+.. ...++... .| ....
T Consensus 14 ~~r~t~~~l~Gk~v~V~GyG~----------iG~g~A~~~rg~G~~V~v~e~dp-~~al~A~~------dG-----~~v~ 71 (163)
T d1li4a1 14 IKRATDVMIAGKVAVVAGYGD----------VGKGCAQALRGFGARVIITEIDP-INALQAAM------EG-----YEVT 71 (163)
T ss_dssp HHHHHCCCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCH-HHHHHHHH------TT-----CEEC
T ss_pred HHHHhCceecCCEEEEecccc----------ccHHHHHHHHhCCCeeEeeeccc-chhHHhhc------Cc-----eEee
Confidence 334333357899999999753 46788999999999999999853 22232211 11 2345
Q ss_pred ChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEe
Q psy11160 464 DPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFD 504 (598)
Q Consensus 464 ~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D 504 (598)
...+++..+|.+|.+|..+.- ++.+.+. .|+...++.-
T Consensus 72 ~~~~a~~~adivvtaTGn~~v--I~~eh~~-~MKdgaIL~N 109 (163)
T d1li4a1 72 TMDEACQEGNIFVTTTGCIDI--ILGRHFE-QMKDDAIVCN 109 (163)
T ss_dssp CHHHHTTTCSEEEECSSCSCS--BCHHHHT-TCCTTEEEEE
T ss_pred ehhhhhhhccEEEecCCCccc--hhHHHHH-hccCCeEEEE
Confidence 688999999999999986542 4555543 5666644443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=88.18 E-value=1.8 Score=40.37 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=55.4
Q ss_pred eEEEE-CC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 7 HICCI-GA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 7 ~I~vi-G~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+++| |. +-+|..+|..|++ .|++|++.|+++++++...+.
T Consensus 5 K~alITGas~GIG~aia~~la~---------------------------~Ga~V~i~~r~~~~l~~~~~~---------- 47 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAA---------------------------EGAKLSLVDVSSEGLEASKAA---------- 47 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHH----------
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHH----------
Confidence 44444 55 5799999999999 899999999999988765421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
..+.-.+..++.+. .+. .|.+.+++.++.+.+...+=.++|...
T Consensus 48 ----------------~~~~~~~~~~~~~~--~Dv----------t~~~~v~~~~~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 48 ----------------VLETAPDAEVLTTV--ADV----------SDEAQVEAYVTATTERFGRIDGFFNNA 91 (258)
T ss_dssp ----------------HHHHCTTCCEEEEE--CCT----------TSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred ----------------HHhhCCCCeEEEEe--ccC----------CCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 01111233444333 232 244567777777777766666777643
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.01 E-value=0.17 Score=42.83 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=57.1
Q ss_pred ceEEEECC----ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 6 SHICCIGA----GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG~----G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
++|+|||+ |.+|..+...|.+ .| ++|+.+....+.+
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~---------------------------~~~g~v~pVnP~~~~i------------ 49 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKE---------------------------YKKGKVYPVNIKEEEV------------ 49 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTT---------------------------CCSSEEEEECSSCSEE------------
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHH---------------------------cCCCcEEEeccCcccc------------
Confidence 68999997 8888888888766 33 5788776542211
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.+..+..++.+.-...|++++++|.. .+.+++++..+.-.+ .+++..|-
T Consensus 50 ------------~G~~~y~sl~dlp~~vDlvvi~vp~~---------------~~~~~~~~~~~~g~~-~~vi~s~G 98 (129)
T d2csua1 50 ------------QGVKAYKSVKDIPDEIDLAIIVVPKR---------------FVKDTLIQCGEKGVK-GVVIITAG 98 (129)
T ss_dssp ------------TTEECBSSTTSCSSCCSEEEECSCHH---------------HHHHHHHHHHHHTCC-EEEECCCS
T ss_pred ------------CCeEeecchhhcCCCCceEEEecChH---------------HhHHHHHHHHHcCCC-EEEEeccc
Confidence 23566677776556789999998643 467777777765543 45555443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.00 E-value=0.8 Score=37.90 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=58.8
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhccccc--ccCCCceEecCChhhh-ccC
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPE--LLDHNAVSILDDPYDT-VKN 471 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a-l~~ 471 (598)
|++.|+|+ +.-+..+++.|.+.|.+|.+.|+-. +.+.+ +...+.. +|+. +-...+.++ +++
T Consensus 1 k~~iIiG~----------G~~G~~la~~L~~~g~~vvvid~d~--~~~~~-~~~~~~~~~~gd~---~~~~~l~~a~i~~ 64 (134)
T d2hmva1 1 KQFAVIGL----------GRFGGSIVKELHRMGHEVLAVDINE--EKVNA-YASYATHAVIANA---TEENELLSLGIRN 64 (134)
T ss_dssp CCEEEECC----------SHHHHHHHHHHHHTTCCCEEEESCH--HHHHH-TTTTCSEEEECCT---TCTTHHHHHTGGG
T ss_pred CEEEEECC----------CHHHHHHHHHHHHCCCeEEEecCcH--HHHHH-HHHhCCcceeeec---ccchhhhccCCcc
Confidence 57888887 3567899999999999999999843 32221 2111111 1211 111222233 678
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccc
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGF 519 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~ 519 (598)
+|++|+++..+.=..+-...+.+....+.+|.=..+.-..+.++..|.
T Consensus 65 a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Ga 112 (134)
T d2hmva1 65 FEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGA 112 (134)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTC
T ss_pred ccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCC
Confidence 999999887653222222223333333445544444434455555554
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.99 E-value=0.14 Score=48.48 Aligned_cols=33 Identities=30% Similarity=0.566 Sum_probs=28.6
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
-|+|||+|.-|+..|..||++ .|++|+++|+.+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~--------------------------~G~~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKN--------------------------PNVQVAIIEQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTS--------------------------TTSCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHc--------------------------cCCeEEEEecCC
Confidence 499999999999999999871 489999999764
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.88 E-value=0.67 Score=38.18 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=55.6
Q ss_pred ceEEEECC----ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIGA----GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~----G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
++|+|||+ |..|..+...|.+ .||+|+.+..+.+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~---------------------------~g~~V~pVnP~~~~i------------- 41 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLS---------------------------KGFEVLPVNPNYDEI------------- 41 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHH---------------------------TTCEEEEECTTCSEE-------------
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHH---------------------------CCCEEEEEccccccc-------------
Confidence 57999995 6789999999998 789888776432211
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.++.+..++.+.-...|++++++|.. .+.+++++..+.-. ..+++.
T Consensus 42 -----------~G~~~y~sl~~lp~~~D~vvi~vp~~---------------~~~~~l~~~~~~g~-k~v~~~ 87 (116)
T d1y81a1 42 -----------EGLKCYRSVRELPKDVDVIVFVVPPK---------------VGLQVAKEAVEAGF-KKLWFQ 87 (116)
T ss_dssp -----------TTEECBSSGGGSCTTCCEEEECSCHH---------------HHHHHHHHHHHTTC-CEEEEC
T ss_pred -----------cCccccccchhccccceEEEEEeCHH---------------HHHHHHHHHHhcCC-ceEEec
Confidence 24566677776556779999997542 46666666665432 344443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.85 E-value=1.1 Score=41.66 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=34.1
Q ss_pred ceEEEE-CC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCI-GA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~vi-G~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.||++| |. +-+|..+|..|++ .|++|+++|+++++++.+.
T Consensus 10 nKvalITGas~GIG~a~a~~la~---------------------------~Ga~V~~~~r~~~~l~~~~ 51 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAK---------------------------SVSHVICISRTQKSCDSVV 51 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTT---------------------------TSSEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHH---------------------------cCCEEEEEECCHHHHHHHH
Confidence 467766 55 6899999999999 8999999999999887655
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=87.64 E-value=0.16 Score=39.26 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=29.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
+++|+|+|.|-.|.=|+..-.. -|++|.++|.+
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~---------------------------LG~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEP---------------------------LGIAVWPVGLD 33 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGG---------------------------GTEEEEEECTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHH---------------------------cCCEEEEEcCC
Confidence 3689999999999999988777 79999999975
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=87.60 E-value=0.27 Score=43.44 Aligned_cols=43 Identities=14% Similarity=0.069 Sum_probs=36.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~ 73 (598)
.-.+|.|+|+|-+|+..+..+.. .| .+|++.|++++|.+..++
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~---------------------------~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKA---------------------------AGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------HTCSEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCCchhHHHHHHHHH---------------------------cCCceeeccCChHHHHHHHHH
Confidence 34689999999999999988877 56 589999999999987764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=87.54 E-value=1.3 Score=41.23 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=32.7
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.+.|.|. +-+|..+|..|++ .|++|++.|+++++++.+.
T Consensus 7 ~alITGas~GIG~aia~~la~---------------------------~Ga~V~~~~r~~~~l~~~~ 46 (260)
T d1zema1 7 VCLVTGAGGNIGLATALRLAE---------------------------EGTAIALLDMNREALEKAE 46 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 3445565 6799999999999 8999999999999887755
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=87.46 E-value=1.8 Score=40.33 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.6
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.+.|.|. +-+|..+|..|++ .|++|++.|+++++++.+.
T Consensus 10 ~alITGas~GIG~aia~~la~---------------------------~Ga~V~~~~r~~~~l~~~~ 49 (259)
T d2ae2a_ 10 TALVTGGSRGIGYGIVEELAS---------------------------LGASVYTCSRNQKELNDCL 49 (259)
T ss_dssp EEEEESCSSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 3445565 5799999999999 8999999999999987654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=87.23 E-value=0.29 Score=47.35 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=32.5
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI 68 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~ 68 (598)
.+||.|.| .|++|..++..|.+ .|++|.++|++....
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~---------------------------~g~~V~~~~r~~~~~ 45 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQT---------------------------MGATVKGYSLTAPTV 45 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSCSSS
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCCCcc
Confidence 37999998 69999999999999 899999999975543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=87.22 E-value=0.48 Score=41.58 Aligned_cols=100 Identities=7% Similarity=0.129 Sum_probs=59.6
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhh-hhhhhhcccccccCCCceEecC---ChhhhccC
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQ-IIQDLKELDPELLDHNAVSILD---DPYDTVKN 471 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~al~~ 471 (598)
||+|+|+. .....+++.|.+.|++|.+||+.....+ +.+.. ......+...... +....+..
T Consensus 3 kIGvIGlG----------~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 68 (178)
T d1pgja2 3 DVGVVGLG----------VMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN----ASAPFAGNLKAFETMEAFAASLKK 68 (178)
T ss_dssp SEEEECCS----------HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT----TTSTTGGGEEECSCHHHHHHHBCS
T ss_pred EEEEEeeh----------HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC----CccccccchhhhhhhhHHHHhccc
Confidence 69999983 5678999999999999999998543221 11110 0000000111122 23334556
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
++.+.++........-.+..+...+.+..+++|...+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~ 106 (178)
T d1pgja2 69 PRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (178)
T ss_dssp SCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred ceEEEEeecCcchhhhhhhhhhhhccccceecccCccc
Confidence 77777777766554444455555666666888888764
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.17 E-value=0.055 Score=50.14 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=45.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
++|.|.|+ |++|..++..|.+ .| ++|++++|++..... +.
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~---------------------------~g~~~~v~~~~R~~~~~~~----------~~ 57 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILE---------------------------QGLFSKVTLIGRRKLTFDE----------EA 57 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHH---------------------------HTCCSEEEEEESSCCCCCS----------GG
T ss_pred CEEEEECCCcHHHHHHHHHHHh---------------------------CCCCCEEEEEecChhhhcc----------cc
Confidence 57999975 9999999999988 45 489999986432111 00
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.. .+.. ....+.-..++.++++++|++|.|+.+.
T Consensus 58 ~~-~i~~-~~~D~~~~~~~~~~~~~~d~vi~~~~~~ 91 (232)
T d2bkaa1 58 YK-NVNQ-EVVDFEKLDDYASAFQGHDVGFCCLGTT 91 (232)
T ss_dssp GG-GCEE-EECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred cc-eeee-eeeccccccccccccccccccccccccc
Confidence 00 0000 0000111134566788999999987553
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=87.06 E-value=0.26 Score=44.37 Aligned_cols=79 Identities=5% Similarity=0.021 Sum_probs=56.6
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhh------cccccccCCCceEecCChhhh
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLK------ELDPELLDHNAVSILDDPYDT 468 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a 468 (598)
+||+|+|- .+-+..++..|.+.|.+|.+|+.. ++.+. .+. .|.+++--...+....++.++
T Consensus 8 ~KI~ViGa----------G~wGtAlA~~La~~g~~V~l~~r~--~~~~~-~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a 74 (189)
T d1n1ea2 8 NKAVVFGS----------GAFGTALAMVLSKKCREVCVWHMN--EEEVR-LVNEKRENVLFLKGVQLASNITFTSDVEKA 74 (189)
T ss_dssp EEEEEECC----------SHHHHHHHHHHHTTEEEEEEECSC--HHHHH-HHHHHTBCTTTSTTCBCCTTEEEESCHHHH
T ss_pred ceEEEECC----------CHHHHHHHHHHHHcCCeEEEEEec--HHHHH-HHhhcccccccccccccccccccchhhhhc
Confidence 58999996 467889999999999999999863 22221 110 111211112367888999999
Q ss_pred ccCCCEEEEEeeccchhh
Q psy11160 469 VKNTHAIVVCTEWDEFVT 486 (598)
Q Consensus 469 l~~adalii~t~~~~f~~ 486 (598)
++++|.+|++++...+++
T Consensus 75 ~~~ad~iiiavPs~~~~~ 92 (189)
T d1n1ea2 75 YNGAEIILFVIPTQFLRG 92 (189)
T ss_dssp HTTCSCEEECSCHHHHHH
T ss_pred cCCCCEEEEcCcHHHHHH
Confidence 999999999999887655
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=86.86 E-value=1.4 Score=38.76 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEec
Q psy11160 383 QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSIL 462 (598)
Q Consensus 383 ~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (598)
++++...-.+.+++|.|.|=+ +--..+++..|.++|++|.+.+-..
T Consensus 26 ~lL~~y~i~l~GK~v~VIGrS---------~~VG~Pla~lL~~~gatVt~~h~~t------------------------- 71 (166)
T d1b0aa1 26 TLLERYNIDTFGLNAVVIGAS---------NIVGRPMSMELLLAGCTTTVTHRFT------------------------- 71 (166)
T ss_dssp HHHHHTTCCCTTCEEEEECCC---------TTTHHHHHHHHHTTTCEEEEECSSC-------------------------
T ss_pred HHHHHcCcccccceEEEEecc---------ccccHHHHHHHHHhhcccccccccc-------------------------
Confidence 344443335689999999942 2356789999999999999876422
Q ss_pred CChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC
Q psy11160 463 DDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 463 ~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r 506 (598)
.++.+.++.||++|.++..+.+-..|| .++..+++|.-
T Consensus 72 ~~l~~~~~~ADivI~a~G~p~~i~~~~------vk~g~vvIDvG 109 (166)
T d1b0aa1 72 KNLRHHVENADLLIVAVGKPGFIPGDW------IKEGAIVIDVG 109 (166)
T ss_dssp SCHHHHHHHCSEEEECSCCTTCBCTTT------SCTTCEEEECC
T ss_pred chhHHHHhhhhHhhhhccCcccccccc------cCCCcEEEecC
Confidence 345667789999999999998755443 23445888864
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.83 E-value=0.026 Score=45.90 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=33.5
Q ss_pred CHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q psy11160 328 DVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLF 389 (598)
Q Consensus 328 d~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~ 389 (598)
+.+|++|.+.|.++ ...++| +|++..+|++.|++ |.++++.+.
T Consensus 2 e~AEl~K~~~N~~~------a~kIsf--------~Nel~~lc~~~g~d-----~~~v~~~~~ 44 (98)
T d1mv8a1 2 EVAEMIKYTCNVWH------AAKVTF--------ANEIGNIAKAVGVD-----GREVMDVIC 44 (98)
T ss_dssp HHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHTTSC-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHhhhh-----HHHHHHHHh
Confidence 46799999988654 455788 99999999999998 456666553
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.82 E-value=0.38 Score=41.25 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=30.6
Q ss_pred ceEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH
Q psy11160 6 SHICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ 70 (598)
Q Consensus 6 ~~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~ 70 (598)
..+.|+ |.||+|+.+|..|++ .|.+|+++++++.-...
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~---------------------------~G~~Vtlv~~~~~~~~~ 79 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLAT---------------------------AGHEVTIVSGVHLANYM 79 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHH---------------------------TTCEEEEEESSCTTTHH
T ss_pred CceEEEecCCChHHHHHHHHHHH---------------------------cCCeEEEEecCCccccc
Confidence 345554 999999999999999 89999999987544333
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.50 E-value=0.74 Score=40.73 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=46.2
Q ss_pred ceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCC-CCCCCCh
Q psy11160 6 SHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKL-PIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~-~~~e~~~ 83 (598)
++++|||-+ .||.|||..|+. .|..|+..+.+... .+.++.. .+...+
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~---------------------------~gaTVt~~~~~~~~--~~~~~~~~~~~~~~- 79 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLAN---------------------------DGATVYSVDVNNIQ--KFTRGESLKLNKHH- 79 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHT---------------------------TSCEEEEECSSEEE--EEESCCCSSCCCCE-
T ss_pred CEEEEECCccccHHHHHHHHHH---------------------------CCCEEEEecccccc--ccccccceeeeeec-
Confidence 689999976 579999999999 78888888764211 0111100 000000
Q ss_pred HHHHhhhcCCceEE-e-cCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFF-S-TDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~-~-~~~~~~~~~adviii~v~tp~ 119 (598)
...+.. + ..+++....||++|.++|.|.
T Consensus 80 --------~~~~~~~~~~~lk~~~~~aDIvIsavG~p~ 109 (171)
T d1edza1 80 --------VEDLGEYSEDLLKKCSLDSDVVITGVPSEN 109 (171)
T ss_dssp --------EEEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred --------cccccccchhHHhhccccCCEEEEccCCCc
Confidence 001111 1 225667789999999998764
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.38 E-value=0.18 Score=44.97 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=29.9
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK 63 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 63 (598)
....+|+|||.|..|+..|..+++ .|.+|+++|.
T Consensus 3 ~~~~~VvIIGgGpaGl~aA~~~ar---------------------------~g~~v~vie~ 36 (192)
T d1vdca1 3 THNTRLCIVGSGPAAHTAAIYAAR---------------------------AELKPLLFEG 36 (192)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHH---------------------------TTCCCEEECC
T ss_pred cccceEEEECCCHHHHHHHHHHHH---------------------------cCCcEEEEEe
Confidence 345789999999999999999998 7899999985
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.17 E-value=0.28 Score=44.08 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=28.7
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
-|+|||+|.-|+..|..+++ .|.+|++++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~---------------------------~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAM---------------------------YGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEecc
Confidence 48999999999999999999 89999999975
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=86.01 E-value=0.71 Score=44.81 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=66.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.|||+|--|.+. .+.+ +....+|+++++|++.++..++-. .
T Consensus 78 pk~VLiiG~G~G~~~~--~ll~-------------------------~~~~~~v~~VEiD~~Vi~~a~~~f--------~ 122 (312)
T d1uira_ 78 PKRVLIVGGGEGATLR--EVLK-------------------------HPTVEKAVMVDIDGELVEVAKRHM--------P 122 (312)
T ss_dssp CCEEEEEECTTSHHHH--HHTT-------------------------STTCCEEEEEESCHHHHHHHHHHC--------H
T ss_pred cceEEEeCCCchHHHH--HHHh-------------------------cCCcceEEEecCCHHHHHHHHhcC--------c
Confidence 3689999999655443 3333 113468999999999998655321 0
Q ss_pred HHHhhh-cCCceEE-ecCHHHHh----ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKT-RDVNLFF-STDIKSAI----QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~-~~~~~~~-~~~~~~~~----~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
..-... .+.+++. ..|..+.+ +.-|+||+..+.|...++ .+.--+-++.++.+.+.++++-+++.-++.
T Consensus 123 ~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~-----~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 123 EWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDN-----PARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp HHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTC-----GGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCcccccc-----hhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 000000 0123332 34544444 346999998866653211 111112356778889999998888776554
Q ss_pred c
Q psy11160 159 P 159 (598)
Q Consensus 159 ~ 159 (598)
+
T Consensus 198 ~ 198 (312)
T d1uira_ 198 I 198 (312)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=85.76 E-value=0.25 Score=47.06 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=28.7
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
-|+|||.|..|+..|..+++ .|.+|+++++.
T Consensus 18 DVlVIG~G~aGl~aA~~la~---------------------------~G~~V~lvEK~ 48 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATD---------------------------SGAKVILIEKE 48 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------CCCcEEEEecC
Confidence 48999999999999999999 88999999975
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=85.75 E-value=0.37 Score=40.66 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
|||+|+|+ |.||..++..+.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~ 22 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSE 22 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhc
Confidence 69999996 9999999988877
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=85.65 E-value=0.65 Score=39.39 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=50.9
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
+.++|+|.|.+=++ ++++-.+.+.|.+.|+++..+-|....+++. +.....++.+.-...
T Consensus 12 ~pksIAVVGaS~~~------~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~--------------g~~~~~~l~~i~~~i 71 (136)
T d1iuka_ 12 QAKTIAVLGAHKDP------SRPAHYVPRYLREQGYRVLPVNPRFQGEELF--------------GEEAVASLLDLKEPV 71 (136)
T ss_dssp HCCEEEEETCCSST------TSHHHHHHHHHHHTTCEEEEECGGGTTSEET--------------TEECBSSGGGCCSCC
T ss_pred CCCeEEEEeecCCC------CCchHHHHHHHhcCCCCceEEEeccccceee--------------ceecccchhhccCCC
Confidence 36799999997555 4799999999999999999999865433322 223445666555667
Q ss_pred CEEEEEeec
Q psy11160 473 HAIVVCTEW 481 (598)
Q Consensus 473 dalii~t~~ 481 (598)
|.+++++.-
T Consensus 72 D~v~v~~p~ 80 (136)
T d1iuka_ 72 DILDVFRPP 80 (136)
T ss_dssp SEEEECSCH
T ss_pred ceEEEeccH
Confidence 999998863
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.55 E-value=4 Score=37.58 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=33.4
Q ss_pred eEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| |.+-+|..+|..|++ .|++|++.|+++++.+.+.
T Consensus 7 K~alVTGas~GIG~aia~~la~---------------------------~Ga~V~~~~r~~~~~~~~~ 47 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVE---------------------------EGAKVMITGRHSDVGEKAA 47 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 56666 467799999999999 8999999999999887665
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.45 E-value=0.35 Score=47.80 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=31.4
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ 70 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~ 70 (598)
|||.|.|. |++|..++..|.+ .||+|+++|--..+...
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~---------------------------~g~~V~~iDnl~~~~~~ 40 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSK---------------------------KNYEVCIVDNLVRRLFD 40 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEECCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHH---------------------------CcCEEEEEecCCccccc
Confidence 79999975 9999999999999 89999999954434333
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.99 E-value=0.3 Score=44.80 Aligned_cols=40 Identities=18% Similarity=0.010 Sum_probs=34.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
..+|..+|||. | ..+..||+ .|++|+++|.|++.++.+.+
T Consensus 46 ~~rvLd~GCG~-G-~~a~~LA~---------------------------~G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 46 GLRVFFPLCGK-A-VEMKWFAD---------------------------RGHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp SCEEEETTCTT-C-THHHHHHH---------------------------TTCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEeCCCC-c-HHHHHHHh---------------------------CCCcEEEEeCCHHHHHHHHH
Confidence 46899999998 3 56778899 89999999999999988764
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.95 E-value=0.52 Score=43.90 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=36.4
Q ss_pred ceEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
-|+++| |.+-+|..+|..|++ .|++|++.|+++++++.+.+
T Consensus 6 gK~alITGas~GIG~aia~~la~---------------------------~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAR---------------------------EGAKVIATDINESKLQELEK 48 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHGGGGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHH---------------------------cCCEEEEEeCCHHHHHHHHh
Confidence 477777 779999999999999 89999999999999887664
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.91 E-value=1.2 Score=36.58 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=48.9
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
|+|+|.|.+=+| ++++-.+.+.|++.|++|..-.|.... + .| +....++.+.=+..|+
T Consensus 2 KsIAVvGaS~~~------~k~g~~v~~~L~~~g~~V~pVnP~~~~--i-----------~G---~~~y~sl~~lp~~~D~ 59 (116)
T d1y81a1 2 RKIALVGASKNP------AKYGNIILKDLLSKGFEVLPVNPNYDE--I-----------EG---LKCYRSVRELPKDVDV 59 (116)
T ss_dssp CEEEEETCCSCT------TSHHHHHHHHHHHTTCEEEEECTTCSE--E-----------TT---EECBSSGGGSCTTCCE
T ss_pred cEEEEEcccCCC------CCcHHHHHHHHHHCCCEEEEEcccccc--c-----------cC---ccccccchhccccceE
Confidence 689999986554 589999999999999998888886431 1 22 2334556555566799
Q ss_pred EEEEeeccc
Q psy11160 475 IVVCTEWDE 483 (598)
Q Consensus 475 lii~t~~~~ 483 (598)
+++++..+.
T Consensus 60 vvi~vp~~~ 68 (116)
T d1y81a1 60 IVFVVPPKV 68 (116)
T ss_dssp EEECSCHHH
T ss_pred EEEEeCHHH
Confidence 999887543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.85 E-value=0.58 Score=41.26 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=36.3
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|-+|+..+..+.. .|. .|++.|++++|.+..++
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~---------------------------~Ga~~Vi~~d~~~~r~~~a~~ 71 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKI---------------------------AGASRIIAIDINGEKFPKAKA 71 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------------------------TTCSEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHH---------------------------hCCceeeeeccchHHHHHHHH
Confidence 34689999999999999888777 675 79999999999887765
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=84.66 E-value=0.39 Score=46.33 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=29.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK 63 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 63 (598)
.--++|||.|.-|+.+|..|++ +|++|++++.
T Consensus 4 ~yDviIVGsG~aG~v~A~~La~---------------------------~G~kVlvLEa 35 (379)
T d2f5va1 4 KYDVVIVGSGPIGCTYARELVG---------------------------AGYKVAMFDI 35 (379)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH---------------------------TTCEEEEECS
T ss_pred cccEEEECcCHHHHHHHHHHhh---------------------------CCCeEEEEec
Confidence 3468999999999999999999 8999999985
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=84.65 E-value=0.35 Score=45.00 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=34.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSN 74 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~ 74 (598)
.||.|||+|-+|+.+|..|+. .|. +++++|-|.=....+++.
T Consensus 31 ~~VliiG~GglGs~va~~La~---------------------------~Gvg~i~lvD~D~Ve~sNL~RQ 73 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLAS---------------------------AGVGNLTLLDFDTVSLSNLQRQ 73 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------------------------HTCSEEEEECCCBCCGGGGGTC
T ss_pred CCEEEECCCHHHHHHHHHHHH---------------------------cCCCeEEEECCcccchhhhhhh
Confidence 689999999999999999999 564 899999875555556554
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.25 E-value=2.5 Score=39.19 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=34.0
Q ss_pred eEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| |.+-+|..+|..|++ .|++|++.++++++++++.
T Consensus 12 K~alITGas~GIG~aia~~la~---------------------------~Ga~V~~~~r~~~~~~~~~ 52 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFAT---------------------------AGASVVVSDINADAANHVV 52 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHT---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 66666 567899999999999 8999999999999887755
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.14 E-value=0.85 Score=42.28 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=33.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+++.|.|. +-+|..+|..|++ .|++|++.|+++++++.+.+
T Consensus 6 K~~lITGas~GIG~aia~~l~~---------------------------~G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAK---------------------------EGARLVACDIEEGPLREAAE 47 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHH
Confidence 34445564 6799999999999 89999999999999887664
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.13 E-value=0.34 Score=43.73 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
++.--|+|||.|.-|+..|..+++ .|.+|+++|..
T Consensus 3 ~~~yDviVIG~GpAGl~aA~~aa~---------------------------~G~kV~lie~~ 37 (233)
T d1v59a1 3 NKSHDVVIIGGGPAGYVAAIKAAQ---------------------------LGFNTACVEKR 37 (233)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESS
T ss_pred CcccCEEEECCCHHHHHHHHHHHH---------------------------CCCcEEEEEec
Confidence 334469999999999999999999 89999999975
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.82 E-value=0.7 Score=43.80 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=58.5
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++|.=+|+|.-.++++..-+- . ++-+|+.+|++++.++..+++.
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~v-------------------------g-p~G~V~~~d~~~~~~~~Ar~n~-------- 141 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAV-------------------------G-PAGQVISYEQRADHAEHARRNV-------- 141 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH-------------------------C-TTSEEEEECSCHHHHHHHHHHH--------
T ss_pred CCCEEEecCcCCcHHHHHHHHhh-------------------------C-CCcEEEEecCCHHHHHHHHHhh--------
Confidence 34688888887666555433332 0 2338999999999998776421
Q ss_pred HHHHhhhcCCceEE-ecCHHHH---hccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFF-STDIKSA---IQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~---~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
..... ....+..+ ..|..+. -...|.||+-+|.|.. +++.+.+.++++-.++.-+
T Consensus 142 ~~~~~-~~~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~~-----------------~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 142 SGCYG-QPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWE-----------------VLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp HHHHT-SCCTTEEEECSCGGGCCCCTTCEEEEEEESSCGGG-----------------GHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc-CCCceEEEEecccccccccCCCcceEEEecCCHHH-----------------HHHHHHhccCCCCEEEEEe
Confidence 01000 00122322 2233221 1357999999988852 4566777888887665433
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.68 E-value=0.49 Score=45.69 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=27.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK 63 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 63 (598)
.||.|.|+ |++|..++..|.+ .|++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~---------------------------~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLE---------------------------AGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHH---------------------------TTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHH---------------------------CcCEEEEEEC
Confidence 48988875 9999999999999 8999999985
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.65 E-value=1.5 Score=37.51 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=47.8
Q ss_pred cCCCeEEEEeccccCCCCcccCC-hHHHHHHHHHHcCCeEEEe-CCCC-Ch-hhhhhhhhcccccccCCCceEecCChhh
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRES-PAIHVCRTLLYEGAKLKIY-DPKV-EP-SQIIQDLKELDPELLDHNAVSILDDPYD 467 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~S-p~l~li~~L~~~G~~V~~~-DP~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (598)
+++.||++.| |+++| -+--++..|.+.|.++.+. -|.. .+ ..... ..+. .+.+..|+.+
T Consensus 1 l~gl~i~~vG--------D~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~--------~~~~-~~~~~~d~~e 63 (153)
T d1pg5a2 1 IDGLVFALLG--------DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILD--------ELNY-PVKEVENPFE 63 (153)
T ss_dssp STTCEEEEEE--------CCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHT--------TCCS-CEEEESCGGG
T ss_pred CCCCEEEEEC--------CCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcc--------cCCC-eEEEEeCHHH
Confidence 3688999998 88998 4777888888889986553 3322 11 11111 1122 5788899999
Q ss_pred hccCCCEEEEE
Q psy11160 468 TVKNTHAIVVC 478 (598)
Q Consensus 468 al~~adalii~ 478 (598)
+++++|+|...
T Consensus 64 ai~~aDvvy~~ 74 (153)
T d1pg5a2 64 VINEVDVLYVT 74 (153)
T ss_dssp TGGGCSEEEEE
T ss_pred HhhcCCeEEEe
Confidence 99999976654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=83.63 E-value=0.88 Score=43.06 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=34.2
Q ss_pred eEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| |.|-+|..+|..|++ .|++|++.|++.++.+...
T Consensus 26 K~alITGas~GIG~aiA~~la~---------------------------~Ga~Vii~~r~~~~l~~~~ 66 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSS---------------------------LGAQCVIASRKMDVLKATA 66 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------cCCEEEEEECCHHHHHHHH
Confidence 67766 689999999999999 8999999999998877644
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=83.44 E-value=0.43 Score=46.43 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=28.1
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK 63 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 63 (598)
-|.|||.|+-|+.+|..|++ +|++|+++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLae---------------------------aG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGE---------------------------AGVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHH---------------------------CcCeEEEEec
Confidence 37899999999999999999 8999999986
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=83.40 E-value=1 Score=38.99 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=52.4
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCC-C-ChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK-V-EPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
++|.+|+++| |+++--+.-++..+...|+++.+.-|. + ................++ .+.+..|+.+++
T Consensus 1 l~g~ki~~vG--------D~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~--~i~~~~d~~~ai 70 (161)
T d1vlva2 1 LKGVKVVFMG--------DTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDG--SVSFTSNLEEAL 70 (161)
T ss_dssp STTCEEEEES--------CTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCC--EEEEESCHHHHH
T ss_pred CCCCEEEEEc--------CCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCC--ceEEEecHHHhh
Confidence 4688999998 566656777888888899999998883 2 222211110000001122 577889999999
Q ss_pred cCCCEEEEEeecc
Q psy11160 470 KNTHAIVVCTEWD 482 (598)
Q Consensus 470 ~~adalii~t~~~ 482 (598)
+++|+|.. +.|.
T Consensus 71 ~~aDviyt-~~~q 82 (161)
T d1vlva2 71 AGADVVYT-DVWA 82 (161)
T ss_dssp TTCSEEEE-CCCC
T ss_pred hhhhheec-ccee
Confidence 99998775 5554
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=83.12 E-value=0.41 Score=42.86 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=28.4
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
-|.|||.|..|+..|..+++ .|.+|+++|.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~---------------------------~G~kV~vie~~ 35 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQ---------------------------LGFKTTCIEKR 35 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHH---------------------------HTCCEEEEECS
T ss_pred CEEEECCCHHHHHHHHHHHH---------------------------CCCcEEEEEec
Confidence 58999999999999999999 78999999874
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.08 E-value=2 Score=40.58 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=67.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
-.+|.|||+|--+.+... +.. ..-+|+++|+|++.++..++- .+.. .+..
T Consensus 73 p~~vLiiG~G~G~~~~~~-l~~---------------------------~~~~v~~VEiD~~Vi~~a~~~-f~~~-~~~~ 122 (276)
T d1mjfa_ 73 PKRVLVIGGGDGGTVREV-LQH---------------------------DVDEVIMVEIDEDVIMVSKDL-IKID-NGLL 122 (276)
T ss_dssp CCEEEEEECTTSHHHHHH-TTS---------------------------CCSEEEEEESCHHHHHHHHHH-TCTT-TTHH
T ss_pred CceEEEecCCchHHHHHH-HHh---------------------------CCceEEEecCCHHHHHHHHHh-hhhc-cchh
Confidence 368999999987665432 222 345899999999999876531 1111 1111
Q ss_pred HHHhhhcCCceEEe-cCHHHHh---ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFS-TDIKSAI---QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~---~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
+......+.+++.. .|..+-+ +.-|+||+-.+.|.... ..+ +-.+.++.+.+.++++-+++.-+..+.
T Consensus 123 ~~~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~-------~~L-~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 123 EAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPA-------KVL-FSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp HHHHTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC------------T-TSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred hhhhccCCCCceEEEChHHHHHhccCCCCEEEEeCCCCCCCc-------ccc-cCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 11111112333332 3433222 45699999887664211 111 235677888999999888777665544
Q ss_pred H
Q psy11160 161 R 161 (598)
Q Consensus 161 ~ 161 (598)
-
T Consensus 195 ~ 195 (276)
T d1mjfa_ 195 L 195 (276)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.72 E-value=0.62 Score=44.51 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=28.4
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK 63 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 63 (598)
+||.|.|. |++|..++..|.+ .|++|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~---------------------------~g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMM---------------------------DGHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHH---------------------------CcCEEEEEeC
Confidence 58999975 9999999999999 8999999986
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=82.72 E-value=2 Score=36.92 Aligned_cols=72 Identities=13% Similarity=0.232 Sum_probs=48.8
Q ss_pred CceEEEECC--ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC-----HHHHHHHHcCCCC
Q psy11160 5 ISHICCIGA--GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS-----EERIRQWNSNKLP 77 (598)
Q Consensus 5 ~~~I~viG~--G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~-----~~~~~~~~~~~~~ 77 (598)
..||++||= ..|-.++...++. -|.++++.... ++..+....
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~---------------------------~g~~i~~~~P~~~~~~~~~~~~~~~---- 51 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAK---------------------------MGMNFVACGPEELKPRSDVFKRCQE---- 51 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH---------------------------TTCEEEEESCGGGCCCHHHHHHHHH----
T ss_pred CCEEEEEcCCccHHHHHHHHHHHH---------------------------cCCEEEEecchhhhhhhhHHHHHHH----
Confidence 368999994 4688888888888 57888876542 222222110
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
........+..++|++++++++|+|....-
T Consensus 52 ---------~~~~~~~~i~~~~d~~~ai~~aDviyt~~~ 81 (161)
T d1vlva2 52 ---------IVKETDGSVSFTSNLEEALAGADVVYTDVW 81 (161)
T ss_dssp ---------HHHHHCCEEEEESCHHHHHTTCSEEEECCC
T ss_pred ---------HHhhcCCceEEEecHHHhhhhhhheeccce
Confidence 001112468899999999999999987653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.69 E-value=3.8 Score=36.01 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=57.9
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
...+|.=||||.-. ++..|++ .|.+|+++|.|++.++..++...
T Consensus 37 ~~~~ILDiGcG~G~--~~~~la~---------------------------~~~~v~giD~S~~~i~~ak~~~~------- 80 (226)
T d1ve3a1 37 KRGKVLDLACGVGG--FSFLLED---------------------------YGFEVVGVDISEDMIRKAREYAK------- 80 (226)
T ss_dssp SCCEEEEETCTTSH--HHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHHHH-------
T ss_pred CCCEEEEECCCcch--hhhhHhh---------------------------hhcccccccccccchhhhhhhhc-------
Confidence 34689999999854 4457788 78999999999998876653100
Q ss_pred HHHHhhhcCCceEEecCHHHH-h--ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSA-I--QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~--~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.... .......|..+. . ...|+|+.. .. .. -........+++.|.+.++||-.+++
T Consensus 81 ----~~~~-~~~~~~~d~~~l~~~~~~fD~I~~~-~~-l~--------~~~~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 81 ----SRES-NVEFIVGDARKLSFEDKTFDYVIFI-DS-IV--------HFEPLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp ----HTTC-CCEEEECCTTSCCSCTTCEEEEEEE-SC-GG--------GCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cccc-cccccccccccccccCcCceEEEEe-cc-hh--------hCChhHHHHHHHHHHHHcCcCcEEEE
Confidence 0000 001122222211 1 235775544 22 11 11123466789999999998765443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.61 E-value=0.82 Score=39.70 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=36.5
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+|-+|+..+..++. . .+.+|+++|++++|.+..++
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~-------------------------~-g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHS-------------------------A-GAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-------------------------T-TCSEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEEecCCccchHHHHHHH-------------------------H-hhchheeecchHHHHHHHHH
Confidence 34689999999999998888887 1 34689999999999987774
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=82.56 E-value=0.47 Score=43.10 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=29.1
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
-|.|||.|.-|++.|..+++ .|++|++++.++
T Consensus 8 DviIIG~GPaGlsaA~~aa~---------------------------~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAAD---------------------------EGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------------------------TTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEeccC
Confidence 58999999999999999999 899999998753
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.52 E-value=0.87 Score=42.22 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=34.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+++.|.|. +-+|..+|..|++ .|++|++.|+++++++.+.+
T Consensus 8 K~~lITGas~GIG~aia~~la~---------------------------~G~~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHA---------------------------TGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------cCCEEEEEECCHHHHHHHHH
Confidence 45556665 7799999999999 89999999999999887763
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.50 E-value=0.87 Score=42.34 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=33.4
Q ss_pred eEEEE-CC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 7 HICCI-GA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 7 ~I~vi-G~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
|+++| |. +-+|..+|..|++ .|++|++.|+++++++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~---------------------------~G~~V~~~~r~~~~~~~~~~ 48 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVA---------------------------EGAKVVFGDILDEEGKAMAA 48 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHH
Confidence 45555 55 7799999999999 89999999999998887653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=82.50 E-value=2.9 Score=36.63 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=57.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.+|.=|||| .|. .+..|++ .|++|+++|.|++.++.+++... +.++
T Consensus 32 grvLDiGcG-~G~-~~~~la~---------------------------~g~~v~gvD~s~~~l~~a~~~~~---~~~~-- 77 (198)
T d2i6ga1 32 GRTLDLGCG-NGR-NSLYLAA---------------------------NGYDVTAWDKNPASMANLERIKA---AEGL-- 77 (198)
T ss_dssp CEEEEETCT-TSH-HHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHHHH---HTTC--
T ss_pred CcEEEECCC-CCH-HHHHHHH---------------------------HhhhhccccCcHHHHHHHHHHhh---hccc--
Confidence 478999999 444 4557788 79999999999998887653100 0011
Q ss_pred HHhhhcCCceEE-ecCHHHH-h-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 86 VVKKTRDVNLFF-STDIKSA-I-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~~-~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.++.+ ..|..+. . ..-|+|+.. .+-. ..+-......++.+.+.++++-+++..
T Consensus 78 -------~~~~~~~~d~~~~~~~~~fD~I~~~-~~~~---------~~~~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 78 -------DNLQTDLVDLNTLTFDGEYDFILST-VVMM---------FLEAQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp -------TTEEEEECCTTTCCCCCCEEEEEEE-SCGG---------GSCTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -------cchhhhheecccccccccccEEEEe-eeee---------cCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11222 1222211 1 234776643 2211 111135677888999999988766654
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=82.43 E-value=0.88 Score=42.20 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=33.4
Q ss_pred eEEEE-C-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI-G-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi-G-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| | .+-+|..+|..|++ .|++|++.|+++++++.+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~---------------------------~G~~Vv~~~r~~~~l~~~~ 45 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAA---------------------------RGAKVIGTATSENGAQAIS 45 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------cCCEEEEEeCCHHHHHHHH
Confidence 55666 5 57799999999999 8999999999999888765
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.43 E-value=2.5 Score=40.16 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=57.2
Q ss_pred eEEE-EC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 7 HICC-IG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 7 ~I~v-iG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+++ .| .+-+|..+|..|++ .|++|++.|+++++++...+.
T Consensus 13 KvalITGas~GIG~aia~~la~---------------------------~Ga~Vvi~~r~~~~l~~~~~e---------- 55 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLE---------------------------LGSNVVIASRKLERLKSAADE---------- 55 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHHH----------
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHH----------
Confidence 4444 45 46799999999999 899999999999988765421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
+... .. ......++.+. .+. .|.+.+++.++.+.+...+=.++|....
T Consensus 56 -l~~~-----------~~-~~~~~~~~~~~--~Dv----------s~~~~v~~~~~~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 56 -LQAN-----------LP-PTKQARVIPIQ--CNI----------RNEEEVNNLVKSTLDTFGKINFLVNNGG 103 (297)
T ss_dssp -HHHT-----------SC-TTCCCCEEEEE--CCT----------TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred -HHhh-----------hc-cccCceEEEEe--ccC----------CCHHHHHHHHHHHHHHhCCeEEEEeecc
Confidence 0000 00 01234454444 333 2445788888888777766667776543
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=82.05 E-value=1.1 Score=42.38 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=33.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+.+.|-|. +-+|..+|..|++ .|++|++.|+++++++++.
T Consensus 6 K~alITGas~GIG~aia~~la~---------------------------~Ga~V~i~~r~~~~l~~~~ 46 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVA---------------------------EGAKVAVLDKSAERLAELE 46 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 34555555 7999999999999 8999999999999887765
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=81.84 E-value=0.41 Score=45.92 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=29.3
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
-|.|||.|.-|+..|..+++ .|++|+++++.+
T Consensus 25 DVvVIG~G~aGl~aA~~la~---------------------------~G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARD---------------------------AGAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHT---------------------------TTCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHH---------------------------CCCcEEEEeCCC
Confidence 58999999999999999999 899999999753
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.83 E-value=1.2 Score=41.60 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=32.8
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
++.|.|. +-+|..+|..|++ .|++|++.|+++++++.+.
T Consensus 7 ~alVTGas~GIG~aia~~la~---------------------------~Ga~V~~~~r~~~~l~~~~ 46 (256)
T d1k2wa_ 7 TALITGSARGIGRAFAEAYVR---------------------------EGARVAIADINLEAARATA 46 (256)
T ss_dssp EEEEETCSSHHHHHHHHHHHH---------------------------TTEEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 3444455 8899999999999 8999999999999887765
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.72 E-value=0.52 Score=43.52 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=28.4
Q ss_pred ceEEEE-C-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCI-G-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~vi-G-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|||++| | .+-+|..+|..|++ .|++|++.|++++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~---------------------------~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEA---------------------------AGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECChH
Confidence 566655 5 57799999999999 8999999998743
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.70 E-value=0.95 Score=42.35 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=35.0
Q ss_pred ceEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
-|+++| |.+-+|..+|..|++ .|++|++.|+++++++.+.
T Consensus 5 gKvalVTGas~GIG~aia~~la~---------------------------~Ga~V~~~~r~~~~l~~~~ 46 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAR---------------------------EGAKVTITGRHAERLEETR 46 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 467777 668999999999999 8999999999999888765
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=81.59 E-value=0.39 Score=42.41 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=28.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
..+|+|||.|..|+..|..+++ .|.+|+++++.
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar---------------------------~g~~v~iie~~ 37 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAAR---------------------------ANLQPVLITGM 37 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT---------------------------TTCCCEEECCS
T ss_pred CCcEEEECCCHHHHHHHHHHHH---------------------------cCCceEEEEee
Confidence 4579999999999999988888 78889998864
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.56 E-value=0.62 Score=39.23 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=19.6
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
..+|+|||.|++|.-+|..|+.
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~ 58 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGR 58 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 3589999999999999999975
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.46 E-value=1 Score=42.01 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=33.8
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.+.|.|. +-+|..+|..|++ .|++|++.|+++++++.+.+
T Consensus 8 ~alITGas~GIG~aia~~la~---------------------------~Ga~V~i~~r~~~~~~~~~~ 48 (250)
T d1ydea1 8 VVVVTGGGRGIGAGIVRAFVN---------------------------SGARVVICDKDESGGRALEQ 48 (250)
T ss_dssp EEEEETCSSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHH
Confidence 4455554 8899999999999 89999999999999887663
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.43 E-value=1.4 Score=38.16 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=34.9
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
...+|.|+|+ |.+|......... .|.+|++.+.++++.+.+++
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~---------------------------~G~~vi~~~~~~~~~~~~~~ 71 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARA---------------------------YGLKILGTAGTEEGQKIVLQ 71 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHH---------------------------TTCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEeccccccccccccccc---------------------------cCcccccccccccccccccc
Confidence 4468999995 9999877766655 78999999999998877653
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=81.35 E-value=3.9 Score=37.70 Aligned_cols=83 Identities=8% Similarity=0.124 Sum_probs=53.7
Q ss_pred eEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC-HHHHHHHHcCCCCCCCCCh
Q psy11160 7 HICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS-EERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 7 ~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~-~~~~~~~~~~~~~~~e~~~ 83 (598)
|+++| |.+-+|..+|..|++ .|++|++.+++ .+.++.+.+.
T Consensus 5 K~alITGas~GIG~aiA~~la~---------------------------~Ga~V~~~~r~~~~~~~~~~~~--------- 48 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAA---------------------------QGADIVLNGFGDAAEIEKVRAG--------- 48 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHH---------------------------TTCEEEEECCSCHHHHHHHHHH---------
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCcHHHHHHHHHH---------
Confidence 56666 557799999999999 89999999996 5666654421
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
+. .-....++++. .+. .|.+.+++.++.+.+...+=.++|..
T Consensus 49 -----------------~~-~~~g~~~~~~~--~Dv----------~~~~~v~~~~~~~~~~~G~iDiLVnn 90 (260)
T d1x1ta1 49 -----------------LA-AQHGVKVLYDG--ADL----------SKGEAVRGLVDNAVRQMGRIDILVNN 90 (260)
T ss_dssp -----------------HH-HHHTSCEEEEC--CCT----------TSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred -----------------HH-HhcCCcEEEEE--CCC----------CCHHHHHHHHHHHHHHhCCCcEEEee
Confidence 00 01123444433 333 24456788888877776665666654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=81.33 E-value=0.21 Score=43.87 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=20.3
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
..+|.|||.|+.|..+|..|++
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~ 24 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQ 24 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHH
T ss_pred CCCEEEECccHHHHHHHHHHHh
Confidence 3579999999999999999998
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=81.30 E-value=0.58 Score=40.67 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=34.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
..++|-.+|||.-- .+..||+ .|++|+++|+|+.-++..++
T Consensus 20 ~~~rvLd~GCG~G~--~a~~la~---------------------------~G~~V~gvD~S~~~i~~a~~ 60 (201)
T d1pjza_ 20 PGARVLVPLCGKSQ--DMSWLSG---------------------------QGYHVVGAELSEAAVERYFT 60 (201)
T ss_dssp TTCEEEETTTCCSH--HHHHHHH---------------------------HCCEEEEEEECHHHHHHHHH
T ss_pred CCCEEEEecCcCCH--HHHHHHH---------------------------cCCceEeecccHHHHHHHHH
Confidence 35789999999864 5568888 79999999999999998774
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=81.30 E-value=0.58 Score=40.56 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=26.9
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK 63 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 63 (598)
.|+|||.|..|+..|..+++ .|.+|+++++
T Consensus 3 DViIIGgGpaGl~AAi~aar---------------------------~G~~v~iie~ 32 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSAR---------------------------KGIRTGLMGE 32 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHT---------------------------TTCCEEEECS
T ss_pred cEEEECcCHHHHHHHHHHHH---------------------------cCCeEEEEEE
Confidence 48999999999999999888 7889999985
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=80.93 E-value=1 Score=42.15 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=33.2
Q ss_pred eEEEE-C-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI-G-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi-G-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| | .+-+|..+|..|++ .|.+|++.|+++++++++.
T Consensus 7 KvalITGas~GIG~aia~~la~---------------------------~Ga~V~i~~r~~~~~~~~~ 47 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVR---------------------------YGAKVVIADIADDHGQKVC 47 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 55555 4 57799999999999 8999999999999888765
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=80.83 E-value=1.7 Score=40.72 Aligned_cols=77 Identities=10% Similarity=0.214 Sum_probs=54.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..||++|| ++ |....+.+ .|.++.++|+++. .|
T Consensus 122 g~kV~vIG--~~--P~v~~l~~---------------------------~~~~~~VlE~~p~------~g---------- 154 (251)
T d2h1qa1 122 GKKVGVVG--HF--PHLESLLE---------------------------PICDLSILEWSPE------EG---------- 154 (251)
T ss_dssp TSEEEEES--CC--TTHHHHHT---------------------------TTSEEEEEESSCC------TT----------
T ss_pred CCEEEEEe--cc--hhHHHHHh---------------------------cCCcEEEEeCCCC------CC----------
Confidence 36899997 45 66666766 6889999999752 11
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
....+..++.+.+||++|++=- ..+...++.|.++.++...||+
T Consensus 155 ----------d~p~~~~~~lLp~aD~viiTGs----------------TlvN~Tl~~LL~~~~~a~~vvl 198 (251)
T d2h1qa1 155 ----------DYPLPASEFILPECDYVYITCA----------------SVVDKTLPRLLELSRNARRITL 198 (251)
T ss_dssp ----------CEEGGGHHHHGGGCSEEEEETH----------------HHHHTCHHHHHHHTTTSSEEEE
T ss_pred ----------CCCchHHHHhhhcCCEEEEEec----------------hhhcCCHHHHHHhCCcCCEEEE
Confidence 1223445678999999999831 2455678889999988865544
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.79 E-value=1.9 Score=37.34 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=50.9
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCC--ChhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKV--EPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
++|.+|+++| |.++ -+--++..|...|+++.+.-|.. .++++...........+ ..+.+..|+.+++
T Consensus 2 l~gl~Ia~VG--------D~~n-v~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~ea~ 70 (163)
T d1pvva2 2 IKGVKVVYVG--------DGNN-VAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESG--GSFELLHDPVKAV 70 (163)
T ss_dssp CTTCEEEEES--------CCCH-HHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT--CEEEEESCHHHHT
T ss_pred cCCCEEEEEC--------CCcH-HHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhccc--ceEEEecCHHHHh
Confidence 5789999998 3333 44667788888899999987742 22222111100000011 1467889999999
Q ss_pred cCCCEEEEEeeccch
Q psy11160 470 KNTHAIVVCTEWDEF 484 (598)
Q Consensus 470 ~~adalii~t~~~~f 484 (598)
+++|++. .+.|...
T Consensus 71 ~~adviy-~~~~~~~ 84 (163)
T d1pvva2 71 KDADVIY-TDVWASM 84 (163)
T ss_dssp TTCSEEE-ECCCCCS
T ss_pred hhccEEe-ecceeec
Confidence 9999665 5666543
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=80.78 E-value=0.52 Score=42.42 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=29.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
..|.|||.|..|+..|..+++ .|.+|++++.+
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~---------------------------~G~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQ---------------------------LGIPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHH---------------------------HTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHH---------------------------CCCcEEEEecC
Confidence 469999999999999999999 78999999875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.77 E-value=1.1 Score=42.20 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=33.0
Q ss_pred eEEEE-C-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI-G-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi-G-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| | .+-+|..+|..|++ .|.+|++.|+++++++.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~---------------------------~Ga~V~l~~r~~~~l~~~~ 46 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQ---------------------------EGANVTITGRSSERLEETR 46 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 45555 4 57799999999999 8999999999999887755
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.70 E-value=2.5 Score=38.21 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=59.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.+|.=||||. |.. +..|++ .|.+|+++|.|++-++..++...
T Consensus 43 ~~iLDiGcGt-G~~-~~~l~~---------------------------~~~~v~gvD~s~~mi~~a~~~~~--------- 84 (251)
T d1wzna1 43 RRVLDLACGT-GIP-TLELAE---------------------------RGYEVVGLDLHEEMLRVARRKAK--------- 84 (251)
T ss_dssp CEEEEETCTT-CHH-HHHHHH---------------------------TTCEEEEEESCHHHHHHHHHHHH---------
T ss_pred CEEEEeCCCC-Ccc-chhhcc---------------------------cceEEEEEeeccccccccccccc---------
Confidence 5799999997 433 456888 78999999999998887664200
Q ss_pred HHhhhcCCceE-EecCHHHH-h-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 86 VVKKTRDVNLF-FSTDIKSA-I-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 86 ~~~~~~~~~~~-~~~~~~~~-~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
. ...++. ...|..+. . ...|+|+++-.+-. ..+......+++.+.+.+++|-++++
T Consensus 85 ---~-~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~---------~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 85 ---E-RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM---------YFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp ---H-TTCCCEEEESCGGGCCCCSCEEEEEECSSGGG---------GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---c-ccccchheehhhhhcccccccchHhhhhhhhh---------cCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 0 000111 22222211 1 24577665421111 12334567889999999998876654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.61 E-value=2.1 Score=40.71 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=63.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
-.+|.|||+|--|.+-. +.+ +....+|+++|+|++.++..++-. +
T Consensus 79 pk~vLiiGgG~G~~~~~--~l~-------------------------~~~~~~v~~vEiD~~Vv~~a~~~~-~------- 123 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLRE--VVK-------------------------HPSVESVVQCEIDEDVIQVSKKFL-P------- 123 (285)
T ss_dssp CCEEEEEECTTSHHHHH--HTT-------------------------CTTCCEEEEEESCHHHHHHHHHHC-H-------
T ss_pred cCeEEEeCCCchHHHHH--HHH-------------------------cCCcceeeeccCCHHHHHHHHhhc-h-------
Confidence 36899999998765443 333 003469999999999998776411 0
Q ss_pred HHHhhhcCCceE-EecCHHHHhc----cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 85 EVVKKTRDVNLF-FSTDIKSAIQ----KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~----~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.......+.+++ ...|..+-++ .-|+||+....|... +.--+-++..+.+.+.++++-+++.-+..+
T Consensus 124 ~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 124 GMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGP--------AESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp HHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-------------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred hhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCc--------ccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 000000112333 2345444454 349999998665421 222244567788999999988887765443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.59 E-value=0.65 Score=42.87 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=32.3
Q ss_pred eEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| |.+-+|..+|..|++ .|++|++.|+++++.+...
T Consensus 6 KvalITGas~GIG~aia~~la~---------------------------~G~~V~~~~r~~~~~~~~~ 46 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVG---------------------------QGASAVLLDLPNSGGEAQA 46 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEECTTSSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEeCChHHHHHHH
Confidence 56655 557799999999999 8999999999987776654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.55 E-value=2.1 Score=36.26 Aligned_cols=68 Identities=24% Similarity=0.238 Sum_probs=50.7
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
+.++|+|+|.+-++ ++++..+++.|.+.|++|..-.|... + ..|. ....++.+.-..-
T Consensus 18 ~~ksIAVVGaS~~~------~~~g~~v~~~L~~~g~~v~pVnP~~~--~-----------i~G~---~~~~sl~dlp~~i 75 (139)
T d2d59a1 18 RYKKIALVGASPKP------ERDANIVMKYLLEHGYDVYPVNPKYE--E-----------VLGR---KCYPSVLDIPDKI 75 (139)
T ss_dssp HCCEEEEETCCSCT------TSHHHHHHHHHHHTTCEEEEECTTCS--E-----------ETTE---ECBSSGGGCSSCC
T ss_pred cCCeEEEEeecCCC------CCchHHHHHHHHHCCCEEEEECCccc--c-----------cCCC---cccccccccCccc
Confidence 46899999986554 58999999999999999998888643 1 2222 3345666666678
Q ss_pred CEEEEEeecc
Q psy11160 473 HAIVVCTEWD 482 (598)
Q Consensus 473 dalii~t~~~ 482 (598)
|++++++.-.
T Consensus 76 D~v~i~vp~~ 85 (139)
T d2d59a1 76 EVVDLFVKPK 85 (139)
T ss_dssp SEEEECSCHH
T ss_pred eEEEEEeCHH
Confidence 9998887754
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=80.52 E-value=5 Score=36.59 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=56.2
Q ss_pred ceEEEE-CC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-------EEEEeCCHHHHHHHHcCCC
Q psy11160 6 SHICCI-GA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-------VTVVDKSEERIRQWNSNKL 76 (598)
Q Consensus 6 ~~I~vi-G~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------v~~~d~~~~~~~~~~~~~~ 76 (598)
++|++| |+ +-+|..+|..|++ .|++ |+++++++++++.+.+.
T Consensus 1 K~VvlITGas~GIG~aia~~la~---------------------------~G~~~~~~~~~v~~~~r~~~~l~~~~~~-- 51 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFAR---------------------------AARHHPDFEPVLVLSSRTAADLEKISLE-- 51 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH---------------------------HTTTCTTCCEEEEEEESCHHHHHHHHHH--
T ss_pred CCEEEEccCCCHHHHHHHHHHHH---------------------------hCccccccCcEEEEEeCCHHHHHHHHHH--
Confidence 366555 65 6799999999999 6765 99999999998876531
Q ss_pred CCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 77 PIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 77 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
..+ ....+.++. .+. .|.+.+++.++.+.+...+=.++|...
T Consensus 52 ------------------------~~~--~g~~~~~~~--~Dv----------t~~~~v~~~~~~~~~~~g~iDilvnnA 93 (240)
T d2bd0a1 52 ------------------------CRA--EGALTDTIT--ADI----------SDMADVRRLTTHIVERYGHIDCLVNNA 93 (240)
T ss_dssp ------------------------HHT--TTCEEEEEE--CCT----------TSHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred ------------------------HHh--cCCcEEEEE--ecC----------CCHHHHHHHHHHHHHHcCCcceeeccc
Confidence 000 122333333 232 244578888888887776666777654
Q ss_pred CC
Q psy11160 157 TV 158 (598)
Q Consensus 157 Tv 158 (598)
.+
T Consensus 94 g~ 95 (240)
T d2bd0a1 94 GV 95 (240)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.47 E-value=2.5 Score=39.45 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=35.6
Q ss_pred CceEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 5 ISHICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 5 ~~~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.++|++| |.+-+|..+|..|++. .|..|++.+|++++.+...
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~--------------------------~g~~Vi~~~r~~~~~~~~~ 45 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRL--------------------------FSGDVVLTARDVTRGQAAV 45 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHH--------------------------SSSEEEEEESSHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHh--------------------------CCCEEEEEECCHHHHHHHH
Confidence 3689988 7789999999999971 4899999999999987654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=80.39 E-value=8.1 Score=35.21 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=27.6
Q ss_pred eEEEE-CC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 7 HICCI-GA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 7 ~I~vi-G~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+++| |. +-+|..+|..|++ .|++|++.|++++
T Consensus 6 KvalVTGas~GIG~aia~~la~---------------------------~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAV---------------------------EGADIAIADLVPA 40 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH---------------------------TTCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCch
Confidence 55555 54 6799999999999 8999999999754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=80.20 E-value=1.1 Score=41.82 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=33.7
Q ss_pred eEEEE-C-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 7 HICCI-G-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 7 ~I~vi-G-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
|+++| | .+-+|..+|..|++ .|++|++.|+++++++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~---------------------------~Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLG---------------------------EGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHH---------------------------TTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHH
Confidence 56666 5 56799999999999 89999999999998887653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.18 E-value=1.2 Score=42.06 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=32.5
Q ss_pred eEEEE--CCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 7 HICCI--GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 7 ~I~vi--G~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+++| |.+-+|..+|..|++ .|.+|++.|+++++++.+.
T Consensus 5 K~alITGas~GIG~aia~~la~---------------------------~Ga~V~~~~r~~~~l~~~~ 45 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAK---------------------------EGAQVTITGRNEDRLEETK 45 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHH---------------------------TTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHH
Confidence 44555 447799999999999 8999999999999887655
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=80.01 E-value=2.7 Score=39.71 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=66.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC----CCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK----LPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~~~~e 80 (598)
..+|.|||.|--+.+- .+.+ +....+|+++|+|++.++..++-. ....+
T Consensus 76 p~~vLiiGgG~G~~~~--~~l~-------------------------~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d 128 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIR--EILK-------------------------HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDD 128 (274)
T ss_dssp CCEEEEESCTTCHHHH--HHTT-------------------------CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTS
T ss_pred cceEEecCCCCcHHHH--HHHh-------------------------cCCcceEEEecCCHHHHHHHHHhChhhcccccC
Confidence 3689999999766543 3333 002359999999999998765411 01111
Q ss_pred CChHHHHhhhcCCceEE-ecCHHHHhc----cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 81 PGLDEVVKKTRDVNLFF-STDIKSAIQ----KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~----~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.++.. ..|..+-++ .-|+||+..+.|.... ..+ +-++..+.+.+.++++-+++.-
T Consensus 129 ------------~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~-------~~L-~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 129 ------------PRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPA-------VNL-FTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp ------------TTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCC-------CCC-STTHHHHHHHHHEEEEEEEEEE
T ss_pred ------------CCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcc-------hhh-ccHHHHHHHHhhcCCCceEEEe
Confidence 22322 234333343 3599999987664321 111 2456677888899999888877
Q ss_pred cCCchH
Q psy11160 156 STVPVR 161 (598)
Q Consensus 156 STv~~~ 161 (598)
+..+..
T Consensus 189 ~~s~~~ 194 (274)
T d1iy9a_ 189 TDNPWF 194 (274)
T ss_dssp CCCTTT
T ss_pred cCCccc
Confidence 665543
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