Psyllid ID: psy11203

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MASKLLRSTSKSLLARQSLPPCILAHQSALCRSSSSAVSTTTESSSAAKFTPTHTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGSI
ccHHHHHHHccHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcc
ccHHHHccccHHHHHHccccccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccHcccHHcccHHHEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHccccccHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccc
MASKLLRSTSKSllarqslppcilahqsalcrssssavstttesssaakftpthtvpssntnrpdwnraVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLvgsnhpllKTAKSLLYNGRNNMQAWGLIVLLISKAaghlnvdemeEDKAAGVLHSQRALAEVTEMIRTSHLVHKgivnitpglysepvvlndmtfgNKIALLSGDYLLSNSCSELAALRNQHLVELMSGavrdlteseflgrrdlqnnplppqflttktspddsnqimesldelpmtpaladwttrnvlsagsllgksckgtLKLAGQDAELQEQGYQFGKHLALAWQACldlepftsnyapgtifnltsapvmfhleQEKSDELLNEINKgtesvtnidykKVYNIvskgpgmrlTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGSI
MASKLLRSTSKSLLARQSLPPCILAHQSALCRSSSSAVSTTtesssaakftpthtvpssntnrpdwNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEflgrrdlqnnplppqflttktspddSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKgtesvtnidykKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGSI
MaskllrstsksllarQSLPPCILAHQSALCRssssavstttesssaaKFTPTHTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGSI
*********************CIL***********************************************EAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEME*DKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLT*******************************************ALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQ*****LLNEINKGTESVTNIDYKKVYNIVSK*********************LQVF********LSNIIV*****
*********************************************************************************SFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQ*LTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEI*********IDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGSI
**********KSLLARQSLPPCILAHQ********************************NTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMR************AMKVLQVFKESDARTALSNIIVAMGSI
*****LRSTSKSLLARQSLPPCILAHQSALCRSSSSAVS*************************DWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGSI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASKLLRSTSKSLLARQSLPPCILAHQSALCRSSSSAVSTTTESSSAAKFTPTHTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query438 2.2.26 [Sep-21-2011]
Q33DR3401 Decaprenyl-diphosphate sy yes N/A 0.787 0.860 0.423 1e-74
Q5U2R1401 Decaprenyl-diphosphate sy yes N/A 0.785 0.857 0.422 1e-74
Q86YH6399 Decaprenyl-diphosphate sy yes N/A 0.785 0.862 0.415 1e-73
Q6CBH3452 Probable hexaprenyl pyrop yes N/A 0.842 0.816 0.245 8e-29
Q7S565449 Probable hexaprenyl pyrop N/A N/A 0.769 0.750 0.274 2e-23
P72580323 Prenyl transferase OS=Syn N/A N/A 0.648 0.879 0.267 1e-22
Q653T6430 Solanesyl-diphosphate syn yes N/A 0.696 0.709 0.257 2e-22
P18900473 Hexaprenyl pyrophosphate yes N/A 0.611 0.566 0.281 1e-21
Q75HZ9403 Solanesyl-diphosphate syn no N/A 0.714 0.776 0.253 1e-21
Q5HZ00422 Solanesyl diphosphate syn yes N/A 0.678 0.703 0.250 2e-21
>sp|Q33DR3|DLP1_MOUSE Decaprenyl-diphosphate synthase subunit 2 OS=Mus musculus GN=Pdss2 PE=1 SV=2 Back     alignment and function desciption
 Score =  281 bits (718), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 231/373 (61%), Gaps = 28/373 (7%)

Query: 66  WNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNN 125
           WN+ VSEAEKIVGYP SF+SLR LLSDE++N+A+ +RKLVG+ HPLL TA++L+++ R+N
Sbjct: 50  WNQVVSEAEKIVGYPASFMSLRCLLSDELSNIAMQVRKLVGTGHPLLTTARALVHDSRHN 109

Query: 126 MQAWGLIVLLISKAAG--HLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNI 183
           +Q  GL+VLLISKAAG    N      D  +GV   QR+LAE+TE+I T+ LVH+GIVN+
Sbjct: 110 LQLRGLVVLLISKAAGPSTRNAACQNYDMVSGVYSCQRSLAEITELIHTALLVHRGIVNL 169

Query: 184 TPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEF 243
           +  L S    L DM FGNKIA+LSGD+LL+N+C+ LA L+N  +VEL+S A+ DL    +
Sbjct: 170 SE-LQSSDGPLKDMQFGNKIAILSGDFLLANACNGLALLQNTKVVELLSSALMDLVHGVY 228

Query: 244 LGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSC 303
                 Q N    +     + PDD                ++ W  +  LS  +LL KSC
Sbjct: 229 ------QENSASTK---ENSIPDD--------------IGISTWKEQTFLSHCALLAKSC 265

Query: 304 KGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNYAPGT-IFNLTSAPVMFHLE 362
           +  ++LA  DA +Q+  +Q+GKH+A++ +   DL+PF  + A  +  FNL SAPV+ H E
Sbjct: 266 QAAMELAKHDAAVQDMAFQYGKHMAMSHKINADLQPFIKDKASDSKTFNLNSAPVVLHQE 325

Query: 363 QEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKES 422
               D  + +I +  E   +++Y K+   +  G G+     L + H  +A++ L+ F  S
Sbjct: 326 FLGRDLWIKQIGEAQEK-GSLNYSKLRETIKAGKGVTSAIDLCRYHGNKALEALESFPPS 384

Query: 423 DARTALSNIIVAM 435
           +AR+AL NI+ A+
Sbjct: 385 EARSALENIVFAV 397
Supplies decaprenyl diphosphate, the precursor for the side chain of the isoprenoid quinones ubiquinone-10.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 1
>sp|Q5U2R1|DLP1_RAT Decaprenyl-diphosphate synthase subunit 2 OS=Rattus norvegicus GN=Pdss2 PE=2 SV=1 Back     alignment and function description
>sp|Q86YH6|DLP1_HUMAN Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2 PE=1 SV=2 Back     alignment and function description
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1 PE=3 SV=1 Back     alignment and function description
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1 Back     alignment and function description
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=preA PE=3 SV=2 Back     alignment and function description
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SPS1 PE=1 SV=1 Back     alignment and function description
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1 SV=1 Back     alignment and function description
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SPS2 PE=1 SV=2 Back     alignment and function description
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
193636675424 PREDICTED: decaprenyl-diphosphate syntha 0.913 0.943 0.722 1e-167
345480024403 PREDICTED: decaprenyl-diphosphate syntha 0.885 0.962 0.684 1e-157
383863097377 PREDICTED: decaprenyl-diphosphate syntha 0.821 0.954 0.728 1e-156
350410629415 PREDICTED: decaprenyl-diphosphate syntha 0.821 0.867 0.718 1e-154
340719562415 PREDICTED: decaprenyl-diphosphate syntha 0.821 0.867 0.713 1e-153
380015327415 PREDICTED: decaprenyl-diphosphate syntha 0.821 0.867 0.710 1e-152
242012483383 hexaprenyl pyrophosphate synthetase, put 0.828 0.947 0.706 1e-150
328709466429 PREDICTED: decaprenyl-diphosphate syntha 0.847 0.864 0.646 1e-139
91084147413 PREDICTED: similar to candidate tumor su 0.826 0.876 0.679 1e-137
170062031449 decaprenyl-diphosphate synthase subunit 0.837 0.817 0.642 1e-132
>gi|193636675|ref|XP_001945782.1| PREDICTED: decaprenyl-diphosphate synthase subunit 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 300/415 (72%), Positives = 341/415 (82%), Gaps = 15/415 (3%)

Query: 30  LCRSSSSAVSTTTESSSAAKFTPTHTVPSSNTNRPDWNRAVSEAEKIVGYPTSFLSLRWL 89
           + ++S+SAV        A+  T  H   + N  +PDWNRAVSEAEKIVGYPTSFLSLRWL
Sbjct: 15  ISKNSASAV-VCYRRPYASSATAVH---NGNQQKPDWNRAVSEAEKIVGYPTSFLSLRWL 70

Query: 90  LSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEME 149
           LSDEIANVALHLRKLVGSNHPLLKTAK LLYNGRNNMQAWGLIVLLISKAAGHLNVDEME
Sbjct: 71  LSDEIANVALHLRKLVGSNHPLLKTAKGLLYNGRNNMQAWGLIVLLISKAAGHLNVDEME 130

Query: 150 EDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGD 209
           EDKAAGVLHSQRALAEVTEMIRTSHLVH G+VNI PGLY EPV+LNDM FGNKIALLSGD
Sbjct: 131 EDKAAGVLHSQRALAEVTEMIRTSHLVHNGLVNIYPGLYPEPVILNDMAFGNKIALLSGD 190

Query: 210 YLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQF------LTTKT 263
           YLLSNSC+ELA+LRNQ LVEL+S A+RDL+E+EF+GRRD QNNPLP  F        +K 
Sbjct: 191 YLLSNSCAELASLRNQDLVELISSALRDLSEAEFVGRRDSQNNPLPSPFEPLNRHFNSKL 250

Query: 264 SPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQF 323
            P +  +  +SL  +P+TPAL DWT RNVLSAGSLLGKSC+GTL LAG   ELQ+QG+ F
Sbjct: 251 -PLNPLEPSDSLGNMPLTPALQDWTKRNVLSAGSLLGKSCQGTLALAGHGVELQKQGFLF 309

Query: 324 GKHLALAWQACLDLEPFTSN--YAPGTIFNLTSAPVMFHLEQEKSDELLNEINKGTESVT 381
           GKHL+LAWQA LDLEPF S   Y+ G  FNLTSAPVMFHLE + S  L  EI+KG  SV 
Sbjct: 310 GKHLSLAWQAYLDLEPFMSGSPYSLGISFNLTSAPVMFHLEHDPS--LFEEIDKGVNSVQ 367

Query: 382 NIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMG 436
           ++DY K+++IV KGPG+  TKQLQK+HS++AM+VL+VF+ESDARTALSNIIVAMG
Sbjct: 368 DVDYAKIHSIVMKGPGIDYTKQLQKEHSRKAMEVLEVFEESDARTALSNIIVAMG 422

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345480024|ref|XP_001605067.2| PREDICTED: decaprenyl-diphosphate synthase subunit 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383863097|ref|XP_003707019.1| PREDICTED: decaprenyl-diphosphate synthase subunit 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350410629|ref|XP_003489096.1| PREDICTED: decaprenyl-diphosphate synthase subunit 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340719562|ref|XP_003398219.1| PREDICTED: decaprenyl-diphosphate synthase subunit 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380015327|ref|XP_003691655.1| PREDICTED: decaprenyl-diphosphate synthase subunit 2-like [Apis florea] Back     alignment and taxonomy information
>gi|242012483|ref|XP_002426962.1| hexaprenyl pyrophosphate synthetase, putative [Pediculus humanus corporis] gi|212511191|gb|EEB14224.1| hexaprenyl pyrophosphate synthetase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328709466|ref|XP_001946662.2| PREDICTED: decaprenyl-diphosphate synthase subunit 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|91084147|ref|XP_970126.1| PREDICTED: similar to candidate tumor suppressor protein [Tribolium castaneum] gi|270008055|gb|EFA04503.1| hypothetical protein TcasGA2_TC014811 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|170062031|ref|XP_001866492.1| decaprenyl-diphosphate synthase subunit 2 [Culex quinquefasciatus] gi|167880063|gb|EDS43446.1| decaprenyl-diphosphate synthase subunit 2 [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
FB|FBgn0037044448 CG10585 [Drosophila melanogast 0.865 0.845 0.595 4.5e-114
ZFIN|ZDB-GENE-040718-43370 pdss2 "prenyl (decaprenyl) dip 0.413 0.489 0.543 2.5e-73
UNIPROTKB|J9NVK1400 PDSS2 "Uncharacterized protein 0.404 0.442 0.561 2.5e-73
UNIPROTKB|A6QR05395 PDSS2 "PDSS2 protein" [Bos tau 0.420 0.465 0.534 2.5e-73
RGD|1359372401 Pdss2 "prenyl (decaprenyl) dip 0.447 0.488 0.52 4.7e-72
UNIPROTKB|Q5U2R1401 Pdss2 "Decaprenyl-diphosphate 0.447 0.488 0.52 4.7e-72
MGI|MGI:1918615401 Pdss2 "prenyl (solanesyl) diph 0.447 0.488 0.52 1.2e-71
UNIPROTKB|Q86YH6399 PDSS2 "Decaprenyl-diphosphate 0.420 0.461 0.529 3.3e-71
UNIPROTKB|F1NMS4359 PDSS2 "Uncharacterized protein 0.397 0.484 0.568 5.4e-67
UNIPROTKB|B4DKU5297 PDSS2 "Decaprenyl-diphosphate 0.420 0.619 0.529 3e-46
FB|FBgn0037044 CG10585 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 236/396 (59%), Positives = 288/396 (72%)

Query:    54 HTVPSSNTNRP--DWNRAVSEAEKIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPL 111
             H  P   T  P  DWNRAVSEAE+IVGYPTSFLSLRWLLSDEIANVALHLRKLVGS HPL
Sbjct:    53 HASPQVTTPPPRHDWNRAVSEAERIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSAHPL 112

Query:   112 LKTAKSLLYNGRNNMQAWGLIVLLISKAAGHL-NVDEMEEDKAAGVLHSQRALAEVTEMI 170
             +KTAK LLYNG+N MQAWGLIVLL+SKAAGH  +V ++E+DK+AGVLHSQRALAEVTEMI
Sbjct:   113 MKTAKHLLYNGKNTMQAWGLIVLLVSKAAGHAPSVPDVEQDKSAGVLHSQRALAEVTEMI 172

Query:   171 RTSHLVHKGIVNITPGLYSEPVV--LNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLV 228
             R SHLVH  +VN+     +   V   +DM+FGNKI LL+GDYLL +S +ELA LRNQ +V
Sbjct:   173 RISHLVHNSVVNLQSSTQAGQDVDTYDDMSFGNKIGLLTGDYLLGHSSAELANLRNQEVV 232

Query:   229 ELMSGAVRDLTESEFLGRRDLQNNPLP--P-QFLTTKTSPD-DSNQIMESLDELPMTPAL 284
             EL+S AVRD +ESEF+G RD QNNPLP  P  F     S   D N+  + +  +P+   L
Sbjct:   233 ELISSAVRDFSESEFIGERDEQNNPLPYKPGTFQRPSLSVGVDFNE-HDVMTPMPIAQVL 291

Query:   285 A----DWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPF 340
                  +W  RN+L+AGSLLGKSC+ +LKLAGQ  ELQ   Y+FGKHLALAWQACLD EPF
Sbjct:   292 GNPEEEWECRNILNAGSLLGKSCQASLKLAGQSEELQRHAYRFGKHLALAWQACLDAEPF 351

Query:   341 TSNYAPGTI-FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMR 399
                  P  + F+L SAPV+FHLE +    + +++  G +SV NIDY K++  +  GP + 
Sbjct:   352 QCPQLPLDVTFSLVSAPVLFHLEHDPG--MYSQLEAGKQSVDNIDYDKIHKAILAGPALA 409

Query:   400 LTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAM 435
              TK+LQ++H+  A+ VLQ F  +DAR AL NII+AM
Sbjct:   410 KTKELQRKHTAAALAVLQHFPATDARQALENIILAM 445
GO:0000010 "trans-hexaprenyltranstransferase activity" evidence=ISS
ZFIN|ZDB-GENE-040718-43 pdss2 "prenyl (decaprenyl) diphosphate synthase, subunit 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9NVK1 PDSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6QR05 PDSS2 "PDSS2 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1359372 Pdss2 "prenyl (decaprenyl) diphosphate synthase, subunit 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U2R1 Pdss2 "Decaprenyl-diphosphate synthase subunit 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1918615 Pdss2 "prenyl (solanesyl) diphosphate synthase, subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q86YH6 PDSS2 "Decaprenyl-diphosphate synthase subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMS4 PDSS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKU5 PDSS2 "Decaprenyl-diphosphate synthase subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q33DR3DLP1_MOUSE2, ., 5, ., 1, ., 9, 10.42350.78760.8603yesN/A
Q5U2R1DLP1_RAT2, ., 5, ., 1, ., 9, 10.42240.78530.8578yesN/A
Q6CBH3COQ1_YARLI2, ., 5, ., 1, ., -0.24510.84240.8163yesN/A
Q86YH6DLP1_HUMAN2, ., 5, ., 1, ., 9, 10.41550.78530.8621yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
TIGR02749322 TIGR02749, prenyl_cyano, solanesyl diphosphate syn 7e-36
CHL00151323 CHL00151, preA, prenyl transferase; Reviewed 2e-31
PLN02857416 PLN02857, PLN02857, octaprenyl-diphosphate synthas 3e-26
PLN02890422 PLN02890, PLN02890, geranyl diphosphate synthase 6e-26
COG0142322 COG0142, IspA, Geranylgeranyl pyrophosphate syntha 7e-10
cd00685259 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat 2e-08
TIGR02748319 TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn 8e-08
cd00867236 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S 3e-07
pfam00348260 pfam00348, polyprenyl_synt, Polyprenyl synthetase 4e-05
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-04
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase Back     alignment and domain information 
 Score =  134 bits (338), Expect = 7e-36
 Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 60/363 (16%)

Query: 81  TSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYN--GRNNMQAWGLIVLLISK 138
            S  SL   + D++  +  +L+ LVG+ HP+L  A   L++  G+    A   IVLL+S+
Sbjct: 1   ASATSLFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAGGKRLRPA---IVLLVSR 57

Query: 139 AAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMT 198
           A       E +E          R LAE+TEMI T+ LVH  +++ +        V +   
Sbjct: 58  ATA-----EQQELTP-----RHRRLAEITEMIHTASLVHDDVIDESDTRRGIETVHSL-- 105

Query: 199 FGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQF 258
           FG ++A+L+GD+L + +   LA L N  +V+L+S  + D  E E                
Sbjct: 106 FGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGE---------------- 149

Query: 259 LTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQE 318
                       I + L++     +L D+  ++     SL+  S K    L+   +++  
Sbjct: 150 ------------IKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVAN 197

Query: 319 QGYQFGKHLALAWQACLDLEPFTSNYA-----PGTIF---NLTSAPVMFHLEQEKS-DEL 369
             Y++GKHL LA+Q   D+  FT +        G+     NLT APV+F LE+E    EL
Sbjct: 198 DLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLT-APVLFALEEEPKLSEL 256

Query: 370 LNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALS 429
           +       E     D ++  ++V K  G++  ++L K+ +Q A++ L     S  R AL 
Sbjct: 257 IER-----EFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSPPREALK 311

Query: 430 NII 432
            ++
Sbjct: 312 ELV 314

Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 322
>gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase Back     alignment and domain information
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II Back     alignment and domain information
>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 438
PLN02890422 geranyl diphosphate synthase 100.0
PLN02857416 octaprenyl-diphosphate synthase 100.0
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 100.0
KOG0776|consensus384 100.0
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 100.0
PRK10888323 octaprenyl diphosphate synthase; Provisional 100.0
CHL00151323 preA prenyl transferase; Reviewed 100.0
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 100.0
PRK10581299 geranyltranstransferase; Provisional 100.0
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 100.0
PF00348260 polyprenyl_synt: Polyprenyl synthetase; InterPro: 100.0
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 100.0
KOG0777|consensus322 100.0
KOG0711|consensus347 99.93
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.91
PF07307212 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE 97.88
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 96.01
TIGR01559336 squal_synth farnesyl-diphosphate farnesyltransfera 95.71
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 95.7
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 94.4
PLN02632334 phytoene synthase 94.14
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 92.97
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 91.51
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-65  Score=522.69  Aligned_cols=319  Identities=26%  Similarity=0.407  Sum_probs=281.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCC--CCcchHHHHHHHHHHHhCCCCcchhhHH-----hhhc
Q psy11203         83 FLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGR--NNMQAWGLIVLLISKAAGHLNVDEMEED-----KAAG  155 (438)
Q Consensus        83 ~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~g--kklr~RplLvLL~s~a~g~~~~~~~~~~-----~~~~  155 (438)
                      ...++.++.++++.|+..|++.+.+..|.+..+..|++..|  || |+||+|++++++++|... ++..++     ...+
T Consensus        81 ~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GK-rlRP~LvLL~a~a~g~~~-~~~~~~~~~~~~~~~  158 (422)
T PLN02890         81 QLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGK-RFRPTVLLLMATALNVPL-PESTEGGVLDIVASE  158 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCc-cHhHHHHHHHHHHcCCCc-ccccccccchhhccc
Confidence            45567789999999999999999999999999988877554  55 999999999999988641 100000     0012


Q ss_pred             chHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Q psy11203        156 VLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAV  235 (438)
Q Consensus       156 i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i  235 (438)
                      +.++++.+|+++||||+||||||||||+++ +|||+ ||+|.+|||++|||+||||+++|+..+++.+++++++.+++++
T Consensus       159 ~~~~~~~~AaavEliH~ASLVHDDIiD~s~-~RRG~-pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~  236 (422)
T PLN02890        159 LRTRQQNIAEITEMIHVASLLHDDVLDDAD-TRRGV-GSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAV  236 (422)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHcccccCCC-CcCCC-cChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            346789999999999999999999999999 99999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH
Q psy11203        236 RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAE  315 (438)
Q Consensus       236 ~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~  315 (438)
                      .++++||++|+.+..+.                            +.++++|++++++|||+||+.||++||+++|++++
T Consensus       237 ~~l~~Gq~ld~~~~~~~----------------------------~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~  288 (422)
T PLN02890        237 EHLVTGETMQITSSREQ----------------------------RRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAE  288 (422)
T ss_pred             HHHHHHHHHHHHhccCC----------------------------CCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHH
Confidence            99999999999875432                            25889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhccCccHHHHHHHHcCCCCCCHHHHHHH
Q psy11203        316 LQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQEKSDELLNEINKGTESVTNIDYKKV  388 (438)
Q Consensus       316 ~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~~~~~~l~~~l~~~~~~~~~~d~~~i  388 (438)
                      ..+.+++||++||+||||+||++||++++     +.|.|  +||+|+|++++++..+  ++.+++.+..  .++++++++
T Consensus       289 ~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~--~l~~~l~~~~--~~~~~v~~~  364 (422)
T PLN02890        289 VAVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFP--QLREVVDRGF--DNPANVDIA  364 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHhcCH--HHHHHHhccc--CCHHHHHHH
Confidence            99999999999999999999999999984     34666  4999999999998766  6777776654  467899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCch------HHHHHHHHHHHHhh
Q psy11203        389 YNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD------ARTALSNIIVAMGS  437 (438)
Q Consensus       389 ~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~------ar~~L~~l~~~v~~  437 (438)
                      +++|.++||+++|++++++|.++|++.|+.||+++      +|+.|..+++++.+
T Consensus       365 ~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~  419 (422)
T PLN02890        365 LEYLGKSRGIQRTRELAREHANLAAAAIESLPETDDEDVLTSRRALIDLTERVIT  419 (422)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999987      79999999998864

>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>KOG0776|consensus Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK10581 geranyltranstransferase; Provisional Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>KOG0777|consensus Back     alignment and domain information
>KOG0711|consensus Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
3apz_A348 Apo Form Of Arabidopsis MediumLONG-Chain Length Pre 3e-22
3aq0_A348 Ligand-Bound Form Of Arabidopsis MediumLONG-Chain L 7e-22
3rmg_A334 Crystal Structure Of Geranylgeranyl Pyrophosphate S 1e-04
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase Length = 348 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 166/351 (47%), Gaps = 54/351 (15%)
Query: 89  LLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEM 148
           L++DE++ ++  LR++V +  P L +A    +      + +   +LL+   A  + V E 
Sbjct: 13  LVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEA 72
Query: 149 EEDKAAGVLHS-----QRALAEVTEMIRTSHLVHKGIVN---ITPGLYSEPVVLNDMTFG 200
              ++  ++ S     QR +AE+TEMI  + L+H  +++      G+ S  VV+     G
Sbjct: 73  LIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVM-----G 127
Query: 201 NKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLT 260
           NK+++L+GD+LLS +C  LAAL+N  +V L++ AV  L                      
Sbjct: 128 NKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLV--------------------- 166
Query: 261 TKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQG 320
                  + + ME         ++  +  +      SL+  SCK    L GQ AE+    
Sbjct: 167 -------TGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLA 219
Query: 321 YQFGKHLALAWQACLDLEPFTSNYA---PGTIFNL----TSAPVMFHLEQ-EKSDELLNE 372
           +++G++L LA+Q   D+  FT   A    G++ ++     +AP++F +E+  +  E++++
Sbjct: 220 FEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQ 279
Query: 373 INKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD 423
           + K      N+D    Y  + K  G++  ++L  +H+  A   +    E+D
Sbjct: 280 VEKDPR---NVDIALEY--LGKSKGIQRARELAMEHANLAAAAIGSLPETD 325
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase (Surface Polar Residue Mutant) Length = 348 Back     alignment and structure
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Bacteroides Thetaiotaomicron Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 5e-33
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 2e-20
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 2e-20
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 4e-20
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 1e-19
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 1e-18
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 7e-16
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 6e-11
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 9e-11
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 9e-11
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 3e-10
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 3e-10
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 3e-08
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 4e-08
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 2e-07
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 4e-06
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 1e-04
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 Back     alignment and structure
 Score =  126 bits (319), Expect = 5e-33
 Identities = 89/374 (23%), Positives = 162/374 (43%), Gaps = 78/374 (20%)

Query: 89  LLSDEIANVALHLRKLVGSNHPLL-KTAKSLLYNGRNNMQAWGLIVLLISKAAG----HL 143
           L++DE++ ++  LR++V +  P L   A+     G    Q    I+LL++ A        
Sbjct: 13  LVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEA 72

Query: 144 NVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVH------------KGIVNITPGLYSEP 191
            + E  +   + +   QR +AE+TEMI  + L+H             G +N         
Sbjct: 73  LIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLN--------- 123

Query: 192 VVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQN 251
                +  GNK+++L+GD+LLS +C  LAAL+N  +V L++ AV  L   E +       
Sbjct: 124 -----VVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETM------- 171

Query: 252 NPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAG 311
                + +T+ T    S               +  +  +      SL+  SCK    L G
Sbjct: 172 -----E-ITSSTEQRYS---------------MDYYMQKTYYKTASLISNSCKAVAVLTG 210

Query: 312 QDAELQEQGYQFGKHLALAWQACLDLEPFTSNYA-----PGTIF---NLTSAPVMFHLEQ 363
           Q AE+    +++G++L LA+Q   D+  FT   A       +      +T AP++F +E+
Sbjct: 211 QTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVIT-APILFAMEE 269

Query: 364 EKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD 423
               +L   +++  +   N+D       + K  G++  ++L  +H+  A   +    E+D
Sbjct: 270 --FPQLREVVDQVEKDPRNVD--IALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETD 325

Query: 424 ------ARTALSNI 431
                 +R AL ++
Sbjct: 326 NEDVKRSRRALIDL 339
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 100.0
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 100.0
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 100.0
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 100.0
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 100.0
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 100.0
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 100.0
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 100.0
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 100.0
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 100.0
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 100.0
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 100.0
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 100.0
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 100.0
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 100.0
4f62_A317 Geranyltranstransferase; enzyme function initiativ 100.0
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 100.0
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 100.0
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 100.0
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 100.0
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 100.0
3lsn_A304 Geranyltranstransferase; structural genomics, prot 100.0
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 100.0
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 100.0
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 100.0
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
3mav_A395 Farnesyl pyrophosphate synthase; PV092040, structu 100.0
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 100.0
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 100.0
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 100.0
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 100.0
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 100.0
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 100.0
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 100.0
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 100.0
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 100.0
2q58_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 100.0
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 100.0
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 94.72
3vj8_A343 Squalene synthase; farnesyl-diphosphate farnesyltr 91.48
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 90.68
3aqb_A147 Component A of hexaprenyl diphosphate synthase; pr 87.68
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 85.36
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 84.38
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
Probab=100.00  E-value=8.2e-68  Score=533.73  Aligned_cols=316  Identities=19%  Similarity=0.238  Sum_probs=264.6

Q ss_pred             hcCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhc
Q psy11203         76 IVGYPTSFLSLRWLLSDEIANVALHLRKLVGSNHPLLKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAG  155 (438)
Q Consensus        76 ~v~~p~s~~~l~~ll~~el~~v~~~l~~~l~s~~p~l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~  155 (438)
                      +-..|++|.++++.+++++++|+..|++.+++++|.+.++..|+...||| |+||+||+++++++|+..           
T Consensus        17 ~~~~~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~gGK-rlRp~l~ll~~~~~g~~~-----------   84 (345)
T 3oyr_A           17 LPRKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGK-RLRPLMTVAAARLAGADN-----------   84 (345)
T ss_dssp             ---CCCCSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCC-CHHHHHHHHHHHHTTCCS-----------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCH-----------
Confidence            33447899999999999999999999999999999999997776654444 999999999999998762           


Q ss_pred             chHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCCCCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Q psy11203        156 VLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAV  235 (438)
Q Consensus       156 i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i  235 (438)
                        +.++++|+++||||+||||||||||+++ +|||+ ||+|.+|||++|||+||||+++||+.+++.+++++++.+++++
T Consensus        85 --~~~~~~A~aiEliH~asLiHDDi~D~s~-~RRG~-pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~  160 (345)
T 3oyr_A           85 --DHFQKLAAAVEFIHTATLLHDDVVDGSQ-LRRGK-VAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARAS  160 (345)
T ss_dssp             --STHHHHHHHHHHHHHHHHHTTTTC-----------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHCcccCCCC-CCCCC-ccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence              5678899999999999999999999999 99999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhhhhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH
Q psy11203        236 RDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAE  315 (438)
Q Consensus       236 ~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~  315 (438)
                      .+|++||++|+.+..+.                            +.++++|++++++|||+||+.||++|++++|++++
T Consensus       161 ~~~~~GQ~~dl~~~~~~----------------------------~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~  212 (345)
T 3oyr_A          161 RVIAEGEVLQLMRSHDL----------------------------NLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVA  212 (345)
T ss_dssp             HHHHHHHHHHHHTSSCS----------------------------SCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHcCCCC----------------------------CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999876442                            25889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCC--CCCChHHHHHHhcc-Ccc--HHHHHHHHcCCCCCCHHHH
Q psy11203        316 LQEQGYQFGKHLALAWQACLDLEPFTSNY-----APGTI--FNLTSAPVMFHLEQ-EKS--DELLNEINKGTESVTNIDY  385 (438)
Q Consensus       316 ~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~g~d--~gk~TlPvl~al~~-~~~--~~l~~~l~~~~~~~~~~d~  385 (438)
                      .++.+++||++||+||||+||++||++++     +.|.|  +||.|+|++|+++. ++.  +.+.+.+.+..  .+++++
T Consensus       213 ~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~--~~~~~~  290 (345)
T 3oyr_A          213 KSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRRE--QTEADF  290 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHHSCSHHHHHHHHHCC------CCSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCC--CCHHHH
Confidence            99999999999999999999999999984     34667  49999999999987 441  13334443322  456889


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q psy11203        386 KKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESDARTALSNIIVAMGS  437 (438)
Q Consensus       386 ~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~ar~~L~~l~~~v~~  437 (438)
                      ++++++|+++|++++|++++++|.++|++.|+.||++++|+.|.++++++++
T Consensus       291 ~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~  342 (345)
T 3oyr_A          291 RRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALEELADFAVS  342 (345)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999874
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 438
d2q80a1291 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s 5e-06
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Geranylgeranyl pyrophosphate synthetase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 42/315 (13%), Positives = 80/315 (25%), Gaps = 56/315 (17%)

Query: 129 WGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLY 188
              +    +            EDK          + EVTEM+  + L+   I + +    
Sbjct: 23  RTKLSQAFNHWLKV------PEDKLQ-------IIIEVTEMLHNASLLIDDIEDNSKLRR 69

Query: 189 SEPVVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRD 248
             PV  +     + I   +  Y L           +   +                    
Sbjct: 70  GFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL------------EL 117

Query: 249 LQNNPLPPQFLTTKTSPDDSNQIMESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLK 308
            Q   L   +    T P +       L +      LA                       
Sbjct: 118 HQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVG--------------------- 156

Query: 309 LAGQDAELQEQGYQFGKHLALAWQACLDLEPFT--------SNYAPGTIFNLTSAPVMFH 360
           L    ++ +E        L L +Q   D             S     T    +   +   
Sbjct: 157 LMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 216

Query: 361 LEQEKSDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFK 420
             + +S ++ N + + TE++     K   + +        T+   K+   +A K +    
Sbjct: 217 WSRPESTQVQNILRQRTENIDIK--KYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARG 274

Query: 421 ESDARTALSNIIVAM 435
            +    AL   +  M
Sbjct: 275 GNPELVALVKHLSKM 289

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 100.0
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1v4ea_280 Octoprenyl-diphosphate synthase {Thermotoga mariti 100.0
d1rqja_299 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1rtra_290 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 94.26
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Geranylgeranyl pyrophosphate synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-57  Score=445.60  Aligned_cols=271  Identities=15%  Similarity=0.088  Sum_probs=238.4

Q ss_pred             HHHHHHHHHcCCCCcchHHHHHHHHHHHhCCCCcchhhHHhhhcchHHHHHHHHHHHHHHHHHhhhhCccCCCCCCCCCC
Q psy11203        112 LKTAKSLLYNGRNNMQAWGLIVLLISKAAGHLNVDEMEEDKAAGVLHSQRALAEVTEMIRTSHLVHKGIVNITPGLYSEP  191 (438)
Q Consensus       112 l~~a~~~~~~~gkklr~RplLvLL~s~a~g~~~~~~~~~~~~~~i~~~~~~lA~avElIHtAsLIHDDIiD~s~~~RRG~  191 (438)
                      +.++.+|++..||| |+||.|++++++++|.+             .+....+|+++||||+||||||||||+++ +|||+
T Consensus         7 l~e~~~y~~~~gGK-r~Rp~l~~~~~~~~~~~-------------~~~~~~~a~aiEllH~asLihDDi~D~~~-~RRg~   71 (291)
T d2q80a1           7 LLEPYKYLLQLPGK-QVRTKLSQAFNHWLKVP-------------EDKLQIIIEVTEMLHNASLLIDDIEDNSK-LRRGF   71 (291)
T ss_dssp             HTHHHHHHTTSSCH-HHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCS-EETTE
T ss_pred             HHHHHHHHHhCCCc-hHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHHHHHHHhcccccCcc-cccCC
Confidence            44566777754444 99999999999999876             25778899999999999999999999999 99999


Q ss_pred             CCchhhhcChHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCCCCCCCCchhh
Q psy11203        192 VVLNDMTFGNKIALLSGDYLLSNSCSELAALRNQHLVELMSGAVRDLTESEFLGRRDLQNNPLPPQFLTTKTSPDDSNQI  271 (438)
Q Consensus       192 ~pt~~~~fGn~~AVLaGD~Lla~A~~~La~l~~~~v~~~~s~~i~~l~~Ge~lql~~~~~~~~~~~~~~~~~~~~~y~~~  271 (438)
                       ||+|.+||+++||++||||++.|++.++++.++.+++.+++++.++++||.+|+.+..+..                  
T Consensus        72 -pt~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~------------------  132 (291)
T d2q80a1          72 -PVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYT------------------  132 (291)
T ss_dssp             -ECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------
T ss_pred             -CccccccchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhHhccccccccccccc------------------
Confidence             9999999999999999999999999999999999999999999999999999998754432                  


Q ss_pred             hhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CC
Q psy11203        272 MESLDELPMTPALADWTTRNVLSAGSLLGKSCKGTLKLAGQDAELQEQGYQFGKHLALAWQACLDLEPFTSNY-----AP  346 (438)
Q Consensus       272 ~~~~~~~~~~~t~e~yl~~i~~KTasL~~~sc~~gailag~~~~~~~~l~~fG~~LGiAFQi~DDllD~~~d~-----~~  346 (438)
                               ..++++|+.++.+|||+||++||++|++++|+++    .+++||+++|+||||+||++||++++     |.
T Consensus       133 ---------~~s~~~y~~ii~~KT~~Lf~~~~~~ga~~~~~~~----~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~  199 (291)
T d2q80a1         133 ---------CPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSF  199 (291)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CT
T ss_pred             ---------cCCHHHHHHHHHhccchhhHhhhhhhhhhcccch----hhHHHHHHHHHHHHHHHHhhhhccchhhccccc
Confidence                     1478999999999999999999999999999874    47899999999999999999999974     34


Q ss_pred             CCC--CCCChHHHHHHhccCc-cHHHHHHHHcCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhccCCch
Q psy11203        347 GTI--FNLTSAPVMFHLEQEK-SDELLNEINKGTESVTNIDYKKVYNIVSKGPGMRLTKQLQKQHSQQAMKVLQVFKESD  423 (438)
Q Consensus       347 g~d--~gk~TlPvl~al~~~~-~~~l~~~l~~~~~~~~~~d~~~i~~~v~~sg~ie~a~~~~~~~~~kA~~~L~~lp~s~  423 (438)
                      |.|  +||.|+|++++++..+ .+++.+++.+..  .+..++++++++|+++|++++|++++++|.++|++.|+.+|+++
T Consensus       200 g~Dl~~gK~Tlpvi~al~~~~~~~~l~~il~~~~--~~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~~l~~~~  277 (291)
T d2q80a1         200 CEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT--ENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP  277 (291)
T ss_dssp             THHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTC--CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             cchhccCCCcHHHHHHHHhcccHHHHHHHHhccc--CCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            667  4999999999998755 346777776654  46788899999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q psy11203        424 ARTALSNI  431 (438)
Q Consensus       424 ar~~L~~l  431 (438)
                      .+.+|.+.
T Consensus       278 ~~~~L~~~  285 (291)
T d2q80a1         278 ELVALVKH  285 (291)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665443
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure