Psyllid ID: psy11239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Protein Sequence
MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISKKRTASREYT
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHcccEEEEEcHHHHHHccHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccEEEEEccHHHHHccHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHcccccccccEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccHHHHHHHHHHHccccEEEEEEHHHccccEcHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccEEEEEEEHHHHHccHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHccccHHEEEEccccHHHHHcccHHHHHHHHHHHccccEEEEEEHHHccccEcHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccEEEEEEEHHHHHccHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHccccEEEEEEEEccccccccHHHccc
Coil and Loop (DISEMBL)
mewfdlfynpkkgrptpiyycknisniLKGSKIFLkredlnftgahkMNNSIAQSLLAKFLKKKRIicetgagmhgvstATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILnshyligtasgphpyptiVRDFQSIIGYEIHQQLNFNFYNKKYILACVgggsnalgrptpiyycknisniLKGSKIFLkredlnftgahkMNNSIAQSLLAKFLKKKRIicetgagmhgvstATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILnshyligtasgphpyptiVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIesggiskkrtasreyt
Flexible Loop (DISEMBL)
mewfdlfynpkkgrptpiyYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVaiesggiskkrtasreyt
Low Complexity Region (SEG)
MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISKKRTASREYT
Disordered region (IsUnstruct)
**WFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIE***************
Disordered Region (DISOPRED)
MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISKK********
Disordered Region (DISEMBL)
MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGI***********
Disordered Region (DISPRO)
MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGIS**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISKKRTASREYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	410	2.2.26 [Sep-21-2011]
B2V8W5	414	Tryptophan synthase beta	yes	N/A	0.495	0.490	0.555	9e-64
O28672	397	Tryptophan synthase beta	yes	N/A	0.492	0.508	0.543	7e-63
Q8R9M9	391	Tryptophan synthase beta	yes	N/A	0.495	0.519	0.560	1e-62
B0K8T6	391	Tryptophan synthase beta	yes	N/A	0.495	0.519	0.555	1e-62
B0K2T9	391	Tryptophan synthase beta	yes	N/A	0.495	0.519	0.550	3e-62
Q1H0M1	400	Tryptophan synthase beta	yes	N/A	0.497	0.51	0.524	2e-61
P16706	403	Tryptophan synthase beta	no	N/A	0.497	0.506	0.533	2e-61
Q6FEF1	403	Tryptophan synthase beta	yes	N/A	0.497	0.506	0.533	2e-61
O66923	397	Tryptophan synthase beta	yes	N/A	0.524	0.541	0.486	4e-61
A6TM76	400	Tryptophan synthase beta	yes	N/A	0.497	0.51	0.538	5e-61

>sp|B2V8W5|TRPB_SULSY Tryptophan synthase beta chain OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=trpB PE=3 SV=1

 Score =  244 bits (623), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 155/207 (74%), Gaps = 4/207 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+Y+   +++++ G+KI+LKREDL  TGAHK+NN++ Q LL K + KKRII ETGA
Sbjct: 57  GRPTPLYFASRLTDVVGGAKIYLKREDLLHTGAHKINNTLGQVLLTKKIGKKRIIAETGA 116

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGVSTAT+  L  LE  IY+GE D +RQ +NV ++KLLG  V +V+ G+  LK+A+NE
Sbjct: 117 GQHGVSTATAASLFGLECTIYMGEEDAERQALNVFRMKLLGAEVKIVKAGSRTLKDAVNE 176

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           A++DW  N+  +HY+IG+A GPHP+P IVRDFQS+IG E+ QQ L         I+ACVG
Sbjct: 177 ALRDWVTNVKTTHYIIGSALGPHPFPMIVRDFQSVIGEEVKQQILEIEGKLPDVIVACVG 236

Query: 373 GGSNALGIFYTFI-NSNFKLVAIESGG 398
           GGSNA+GIFY FI ++  +LV +E+GG
Sbjct: 237 GGSNAIGIFYPFIEDTQVRLVGVEAGG 263

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.
Sulfurihydrogenibium sp. (strain YO3AOP1) (taxid: 436114)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0

>sp|O28672|TRPB1_ARCFU Tryptophan synthase beta chain 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=trpB1 PE=3 SV=1

 Score =  241 bits (615), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 112/206 (54%), Positives = 155/206 (75%), Gaps = 4/206 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+Y+ +N+S  L G KI+LKREDL   GAHK+NN+I Q+LLAKF+ KKR+I ETGA
Sbjct: 61  GRPTPLYFAENLSREL-GVKIYLKREDLLHGGAHKINNTIGQALLAKFMGKKRVIAETGA 119

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGV+TA +  LL LE+ IY+G  DY+RQ +NV +++LLG  V  V+ G+  LK+A+NE
Sbjct: 120 GQHGVATAMAAALLGLEAEIYMGAEDYERQKMNVFRMELLGAKVTAVESGSRTLKDAINE 179

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           A++DW  +  ++HYLIG+  GPHP+PTIVRDFQ++IG E  +Q +         I+ACVG
Sbjct: 180 ALRDWVESFEHTHYLIGSVVGPHPFPTIVRDFQAVIGKEARRQIIEAEGGMPDAIIACVG 239

Query: 373 GGSNALGIFYTFINSNFKLVAIESGG 398
           GGSNA+GIF+ F+N + +L+ +E+GG
Sbjct: 240 GGSNAMGIFHPFLNDDVRLIGVEAGG 265

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q8R9M9|TRPB_THETN Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=trpB PE=3 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 149/207 (71%), Gaps = 4/207 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+YY +N++  L G+KI+LKREDLN TGAHK+NN + Q LLAK + KKRII ETGA
Sbjct: 50  GRPTPLYYAENLTKRLGGAKIYLKREDLNHTGAHKINNVLGQVLLAKRMGKKRIIAETGA 109

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNE 313
           G HGV+TAT+  +  +E  I++GE D KRQ +NV ++KLLG  V  V  G   LK+A+NE
Sbjct: 110 GQHGVATATAAAMFGMECEIFMGEEDIKRQALNVFRMKLLGAKVTAVTSGTRTLKDAVNE 169

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           AI+DW  NI  + Y+IG+  GPHPYPT+VRDFQ +IG E  +Q L        Y++ACVG
Sbjct: 170 AIRDWVTNIETTFYVIGSVVGPHPYPTMVRDFQRVIGDETKEQILEKEGRLPDYVVACVG 229

Query: 373 GGSNALGIFYTFI-NSNFKLVAIESGG 398
           GGSNA+GIFY FI +   KLV +E+ G
Sbjct: 230 GGSNAMGIFYPFIEDKGVKLVGVEAAG 256

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|B0K8T6|TRPB_THEP3 Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpB PE=3 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 151/207 (72%), Gaps = 4/207 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+YY +N++  L G+KI+LKREDLN TGAHK+NN + Q LLAK + KKR+I ETGA
Sbjct: 50  GRPTPLYYAENLTKRLGGAKIYLKREDLNHTGAHKINNVLGQILLAKRMNKKRVIAETGA 109

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNE 313
           G HGV+TAT+  +  +E  I++GE D KRQ++NV ++KLLG  V  V  G   LK+A+NE
Sbjct: 110 GQHGVATATAAAMFGMECEIFMGEEDIKRQSLNVFRMKLLGAKVTPVTTGTKTLKDAVNE 169

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           AI+DW  NI N+ Y+IG+  GPHPYPT+VRDFQ +IG E  +Q L        Y++ACVG
Sbjct: 170 AIRDWVTNIDNTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVG 229

Query: 373 GGSNALGIFYTFI-NSNFKLVAIESGG 398
           GGSNA+GIFY FI +   KL+ +E+ G
Sbjct: 230 GGSNAMGIFYPFIEDKEVKLIGVEAAG 256

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|B0K2T9|TRPB_THEPX Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1

 Score =  239 bits (610), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/207 (55%), Positives = 152/207 (73%), Gaps = 4/207 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+YY +N++  L G+KI+LKREDLN TGAHK+NN + Q LLAK + KKR+I ETGA
Sbjct: 50  GRPTPLYYAENLTKKLGGAKIYLKREDLNHTGAHKINNVLGQILLAKRMNKKRVIAETGA 109

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ--YGNLKEAMNE 313
           G HGV+TAT+  +  +E  I++GE D KRQ++NV ++KLLG  V  V+   G LK+A+NE
Sbjct: 110 GQHGVATATAAAMFGMECEIFMGEEDIKRQSLNVFRMKLLGAKVTPVKSGTGTLKDAVNE 169

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           AI+DW  NI ++ Y+IG+  GPHPYPT+VRDFQ +IG E  +Q L        Y++ACVG
Sbjct: 170 AIRDWVTNINDTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVG 229

Query: 373 GGSNALGIFYTFI-NSNFKLVAIESGG 398
           GGSNA+GIFY FI +   KL+ +E+ G
Sbjct: 230 GGSNAMGIFYPFIEDKEVKLIGVEAAG 256

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q1H0M1|TRPB_METFK Tryptophan synthase beta chain OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=trpB PE=3 SV=1

 Score =  237 bits (604), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 151/208 (72%), Gaps = 4/208 (1%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
           +GRP+P+YY + ++    G++I+LKREDLN TGAHK+NN+I Q+LLAK + K R+I ETG
Sbjct: 57  VGRPSPVYYAERLTQKAGGARIYLKREDLNHTGAHKVNNTIGQALLAKRMGKPRVIAETG 116

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312
           AG HGV+TAT    L LE ++Y+G  D KRQ  NV ++KLLG TV  V+ G+  LK+A+N
Sbjct: 117 AGQHGVATATIAARLGLECVVYMGAEDVKRQAPNVFRMKLLGATVVPVESGSKTLKDALN 176

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLN-FNFYNKKYILACV 371
           EA++DW  NI N+ Y+IGT +GPHPYP +VRDFQ++IG E  QQ+          ++ACV
Sbjct: 177 EAMRDWVTNISNTFYIIGTVAGPHPYPMMVRDFQAVIGTEAKQQMQELIGRQPDAVIACV 236

Query: 372 GGGSNALGIFYTFIN-SNFKLVAIESGG 398
           GGGSNA+GIFY +I+    +L+ +E+ G
Sbjct: 237 GGGSNAMGIFYPYIDVEGVRLIGVEAAG 264

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P16706|TRPB_ACICA Tryptophan synthase beta chain OS=Acinetobacter calcoaceticus GN=trpB PE=3 SV=2

 Score =  236 bits (603), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 153/208 (73%), Gaps = 4/208 (1%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
           +GRP+P+YY +  S  L G++I+LKREDLN TG+HK+NN+I Q+LLAK   KKRII ETG
Sbjct: 58  VGRPSPLYYAERWSKKLGGAQIYLKREDLNHTGSHKVNNTIGQALLAKLSGKKRIIAETG 117

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312
           AG HGV+TAT    L LE ++++G  D KRQ +NV +++LLG TV  VQ G+  LK+AMN
Sbjct: 118 AGQHGVATATIAARLGLECVVFMGAEDVKRQAMNVYRMRLLGATVIPVQSGSKTLKDAMN 177

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN-KKYILACV 371
           EA++DW  N+ +++Y+IGT +GPHPYP +VRDFQSIIG E  +Q+          ++ACV
Sbjct: 178 EAMRDWVTNVDSTYYVIGTVAGPHPYPQLVRDFQSIIGREARRQIQEQAGRLPDALVACV 237

Query: 372 GGGSNALGIFYTFINS-NFKLVAIESGG 398
           GGGSNA+G+FY F+N  + K+  +E+ G
Sbjct: 238 GGGSNAIGLFYPFLNDQDVKMYGVEAAG 265

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Acinetobacter calcoaceticus (taxid: 471)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q6FEF1|TRPB_ACIAD Tryptophan synthase beta chain OS=Acinetobacter sp. (strain ADP1) GN=trpB PE=3 SV=1

 Score =  236 bits (603), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 153/208 (73%), Gaps = 4/208 (1%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
           +GRP+P+YY +  S  L G++I+LKREDLN TG+HK+NN+I Q+LLAK   KKRII ETG
Sbjct: 58  VGRPSPLYYAERWSKKLGGAQIYLKREDLNHTGSHKVNNTIGQALLAKLSGKKRIIAETG 117

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312
           AG HGV+TAT    L LE ++++G  D KRQ +NV +++LLG TV  VQ G+  LK+AMN
Sbjct: 118 AGQHGVATATIAARLGLECVVFMGAEDVKRQAMNVYRMRLLGATVIPVQSGSKTLKDAMN 177

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN-KKYILACV 371
           EA++DW  N+ +++Y+IGT +GPHPYP +VRDFQSIIG E  +Q+          ++ACV
Sbjct: 178 EAMRDWVTNVDSTYYVIGTVAGPHPYPQLVRDFQSIIGREARRQIQEQAGRLPDALVACV 237

Query: 372 GGGSNALGIFYTFINS-NFKLVAIESGG 398
           GGGSNA+G+FY F+N  + K+  +E+ G
Sbjct: 238 GGGSNAIGLFYPFLNDQDVKMYGVEAAG 265

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|O66923|TRPB1_AQUAE Tryptophan synthase beta chain 1 OS=Aquifex aeolicus (strain VF5) GN=trpB1 PE=3 SV=1

 Score =  235 bits (600), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/230 (48%), Positives = 160/230 (69%), Gaps = 15/230 (6%)

Query: 173 QLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN 232
           Q   ++Y ++Y            GRPTP+Y+ + ++  + G+KI+LKREDL  TGAHK+N
Sbjct: 44  QKELDYYLREYA-----------GRPTPLYFAEKLTKYVGGAKIYLKREDLLHTGAHKIN 92

Query: 233 NSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKI 292
           N+I Q LL K + KKR+I ETGAG HGV+TAT+  L  LE ++Y+GE D +RQ +NV ++
Sbjct: 93  NTIGQCLLTKRMGKKRVIAETGAGQHGVATATASALFGLECVVYMGEEDAERQALNVFRM 152

Query: 293 KLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG 350
           KLLG  V +V+ G+  LK+A+NEA++DW  N+ ++HY+IG+  GPHP+P IVRDFQS+IG
Sbjct: 153 KLLGAKVEIVKSGSRTLKDAINEALRDWVTNVESTHYVIGSVVGPHPFPMIVRDFQSVIG 212

Query: 351 YEIHQQ-LNFNFYNKKYILACVGGGSNALGIFYTFI-NSNFKLVAIESGG 398
            E  +Q L         I+ACVGGGSNA+GIFY F+ +   +L+ +E+GG
Sbjct: 213 RETKEQILQKEGRLPDAIVACVGGGSNAMGIFYPFVEDKGVQLIGVEAGG 262

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|A6TM76|TRPB_ALKMQ Tryptophan synthase beta chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpB PE=3 SV=1

 Score =  235 bits (599), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 150/208 (72%), Gaps = 4/208 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+YY +N++  L G KI+LKREDLN TGAHK+NN I Q LLA+ +KKKRII ETGA
Sbjct: 56  GRPTPLYYAENLTKKLGGGKIYLKREDLNHTGAHKINNVIGQVLLARKMKKKRIIAETGA 115

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNE 313
           G HGV+TAT C + +LE ++Y+G  D +RQ +NV K+++LG  V  V  G   LK+A NE
Sbjct: 116 GQHGVATATICAMFDLECVVYMGAEDIERQALNVFKMEMLGAEVVSVTSGTATLKDATNE 175

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           AI+DW  N+ +++Y+IG+  GPHPYPT+VRDFQ IIG E+ +Q L        Y++ACVG
Sbjct: 176 AIRDWVANVKDTYYVIGSVVGPHPYPTMVRDFQRIIGDEVKEQILEKEGRLPNYLVACVG 235

Query: 373 GGSNALGIFYTFI-NSNFKLVAIESGGI 399
           GGSNA+G+FY F  +    L  +E+ G+
Sbjct: 236 GGSNAMGLFYPFYEDEAVALYGVEAAGL 263

The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
269926356	409	tryptophan synthase subunit beta [Thermo	0.490	0.491	0.539	4e-62
237756832	414	tryptophan synthase, beta subunit [Sulfu	0.495	0.490	0.560	6e-62
188996691	414	tryptophan synthase subunit beta [Sulfur	0.495	0.490	0.555	6e-62
307069576	392	putative tryptophan synthase subunit bet	0.531	0.556	0.559	6e-62
430376850	400	tryptophan synthase subunit beta [Moraxe	0.504	0.517	0.545	7e-62
410668946	414	tryptophan synthase subunit beta TrpB [T	0.524	0.519	0.484	8e-62
253999255	400	tryptophan synthase subunit beta [Methyl	0.5	0.512	0.535	2e-61
225848666	415	tryptophan synthase subunit beta [Sulfur	0.495	0.489	0.560	2e-61
374993317	409	tryptophan synthase subunit beta [Desulf	0.497	0.498	0.552	2e-61
253996352	400	tryptophan synthase subunit beta [Methyl	0.497	0.51	0.538	4e-61

>gi|269926356|ref|YP_003322979.1| tryptophan synthase subunit beta [Thermobaculum terrenum ATCC BAA-798] gi|269790016|gb|ACZ42157.1| tryptophan synthase, beta subunit [Thermobaculum terrenum ATCC BAA-798]

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 115/213 (53%), Positives = 158/213 (74%), Gaps = 12/213 (5%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
           +GRPTP+Y+ K +S IL G++I+LKREDL  TGAHK+NN++ Q+LLA+ + K+RII ETG
Sbjct: 66  VGRPTPLYHAKRLSEILGGAQIYLKREDLAHTGAHKINNALGQALLARKMGKRRIIAETG 125

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMN 312
           AG HGV+TAT C +L L+ ++Y+G  D +RQ +NV +++LLG TV  V+ G   LK+A+N
Sbjct: 126 AGQHGVATATVCAMLGLDCVVYMGSEDVERQKLNVYRMELLGATVVPVESGTRTLKDAIN 185

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-----KYI 367
           EAI+DW  N+  + YLIG+  GPHPYP IVRDFQS+IG E  +Q    F +K       I
Sbjct: 186 EAIRDWVTNVRETFYLIGSVVGPHPYPMIVRDFQSVIGKESREQ----FLSKVGRLPDII 241

Query: 368 LACVGGGSNALGIFYTFI-NSNFKLVAIESGGI 399
           +ACVGGGSN++GIFY FI + + KLV +E+GG+
Sbjct: 242 VACVGGGSNSMGIFYPFIEDKDVKLVGVEAGGL 274

Source: Thermobaculum terrenum ATCC BAA-798

Species: Thermobaculum terrenum

Genus: Thermobaculum

Superkingdom: Bacteria

>gi|237756832|ref|ZP_04585316.1| tryptophan synthase, beta subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691007|gb|EEP60131.1| tryptophan synthase, beta subunit [Sulfurihydrogenibium yellowstonense SS-5]

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 155/207 (74%), Gaps = 4/207 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+Y+   ++N++ G+KI+LKREDL  TGAHK+NN++ Q LL K + KKRII ETGA
Sbjct: 57  GRPTPLYFASRLTNVVGGAKIYLKREDLLHTGAHKINNTLGQVLLTKKIGKKRIIAETGA 116

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGVSTAT+  L  LE  IY+GE D +RQ++NV ++KLLG  V +V+ G+  LK+A+NE
Sbjct: 117 GQHGVSTATAASLFGLECAIYMGEEDAERQSLNVFRMKLLGAEVKIVKAGSRTLKDAVNE 176

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           A++DW  N+  +HY+IG+A GPHP+P IVRDFQS+IG E+ QQ L         I+ACVG
Sbjct: 177 ALRDWVTNVKTTHYIIGSALGPHPFPMIVRDFQSVIGEEVKQQILEIEGKLPDVIVACVG 236

Query: 373 GGSNALGIFYTFI-NSNFKLVAIESGG 398
           GGSNA+GIFY FI +   +LV +E+GG
Sbjct: 237 GGSNAIGIFYPFIEDVQVRLVGVEAGG 263

Source: Sulfurihydrogenibium yellowstonense SS-5

Species: Sulfurihydrogenibium yellowstonense

Genus: Sulfurihydrogenibium

Family: Hydrogenothermaceae

Order: Aquificales

Class: Aquificae

Phylum: Aquificae

Superkingdom: Bacteria

>gi|188996691|ref|YP_001930942.1| tryptophan synthase subunit beta [Sulfurihydrogenibium sp. YO3AOP1] gi|226707945|sp|B2V8W5.1|TRPB_SULSY RecName: Full=Tryptophan synthase beta chain gi|188931758|gb|ACD66388.1| tryptophan synthase, beta subunit [Sulfurihydrogenibium sp. YO3AOP1]

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 155/207 (74%), Gaps = 4/207 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+Y+   +++++ G+KI+LKREDL  TGAHK+NN++ Q LL K + KKRII ETGA
Sbjct: 57  GRPTPLYFASRLTDVVGGAKIYLKREDLLHTGAHKINNTLGQVLLTKKIGKKRIIAETGA 116

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGVSTAT+  L  LE  IY+GE D +RQ +NV ++KLLG  V +V+ G+  LK+A+NE
Sbjct: 117 GQHGVSTATAASLFGLECTIYMGEEDAERQALNVFRMKLLGAEVKIVKAGSRTLKDAVNE 176

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           A++DW  N+  +HY+IG+A GPHP+P IVRDFQS+IG E+ QQ L         I+ACVG
Sbjct: 177 ALRDWVTNVKTTHYIIGSALGPHPFPMIVRDFQSVIGEEVKQQILEIEGKLPDVIVACVG 236

Query: 373 GGSNALGIFYTFI-NSNFKLVAIESGG 398
           GGSNA+GIFY FI ++  +LV +E+GG
Sbjct: 237 GGSNAIGIFYPFIEDTQVRLVGVEAGG 263

Source: Sulfurihydrogenibium sp. YO3AOP1

Species: Sulfurihydrogenibium sp. YO3AOP1

Genus: Sulfurihydrogenibium

Family: Hydrogenothermaceae

Order: Aquificales

Class: Aquificae

Phylum: Aquificae

Superkingdom: Bacteria

>gi|307069576|ref|YP_003878053.1| putative tryptophan synthase subunit beta [Candidatus Zinderia insecticola CARI] gi|306482836|gb|ADM89707.1| putative tryptophan synthase, beta subunit [Candidatus Zinderia insecticola CARI]

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 164/227 (72%), Gaps = 9/227 (3%)

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
           FNF NK Y         N +GRPT IY+ K ++  LKG+KIF KREDLN TGAHK+NN I
Sbjct: 42  FNFINKYYKEL-----KNFIGRPTSIYFAKRLTKFLKGAKIFFKREDLNHTGAHKINNVI 96

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
            Q++LAK + KKRII ETGAG HG++T+T C    ++  IY+GEND KRQ+ NVKK+KLL
Sbjct: 97  GQAILAKIMNKKRIIAETGAGQHGLATSTICAKFGIKCTIYMGENDIKRQSENVKKMKLL 156

Query: 296 GGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
           G  +  V+ G   LK+A+NEA+KDW  N+ N+ Y+IGT +GPHPYP IVRDFQSIIGYE 
Sbjct: 157 GSKIISVKTGTKTLKDALNEAMKDWIKNVKNTFYIIGTIAGPHPYPMIVRDFQSIIGYES 216

Query: 354 HQQLNFNFYN-KKYILACVGGGSNALGIFYTFI-NSNFKLVAIESGG 398
             Q+  N  N  KYI+A +GGGSN++GIFY++I  +N KL+ +E+ G
Sbjct: 217 ILQIFENKINIPKYIIASIGGGSNSIGIFYSYIKKNNIKLIGVEAAG 263

Source: Candidatus Zinderia insecticola CARI

Species: Candidatus Zinderia insecticola

Genus: Candidatus Zinderia

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|430376850|ref|ZP_19430983.1| tryptophan synthase subunit beta [Moraxella macacae 0408225] gi|429539987|gb|ELA08016.1| tryptophan synthase subunit beta [Moraxella macacae 0408225]

 Score =  244 bits (622), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 115/211 (54%), Positives = 156/211 (73%), Gaps = 4/211 (1%)

Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N +GRPTP+Y+ K ++N   G+KI+LKREDLN TGAHK+NN+I Q+LLAK + KKRII E
Sbjct: 56  NYVGRPTPLYFAKRLTNETNGAKIYLKREDLNHTGAHKVNNTIGQALLAKLVGKKRIIAE 115

Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV+TAT    L LE ++Y+G +D +RQ +NV ++KLLG TV  V  G+  LK+A
Sbjct: 116 TGAGQHGVATATIAARLGLECVVYMGADDVERQKMNVYRMKLLGATVVSVTSGSRTLKDA 175

Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIH-QQLNFNFYNKKYILA 369
           MNEA++DW  N+  ++Y+IGT +GPHPYP +VRDFQ+IIG E   Q +         ++A
Sbjct: 176 MNEAMRDWVTNVDTTYYVIGTVAGPHPYPLLVRDFQAIIGREARLQHVELEGKLPDALVA 235

Query: 370 CVGGGSNALGIFYTFINS-NFKLVAIESGGI 399
           CVGGGSNALG+FY F+N  + K+  +E+GG+
Sbjct: 236 CVGGGSNALGLFYEFLNDKSVKMYGVEAGGL 266

Source: Moraxella macacae 0408225

Species: Moraxella macacae

Genus: Moraxella

Family: Moraxellaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|410668946|ref|YP_006921317.1| tryptophan synthase subunit beta TrpB [Thermacetogenium phaeum DSM 12270] gi|409106693|gb|AFV12818.1| tryptophan synthase beta subunit TrpB [Thermacetogenium phaeum DSM 12270]

 Score =  244 bits (622), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 159/229 (69%), Gaps = 14/229 (6%)

Query: 173 QLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN 232
           Q   N+Y K Y+           GRPTP+Y+ + ++  L G+KI+LKREDLN TGAHK+N
Sbjct: 43  QEELNYYLKDYV-----------GRPTPLYFAERLTRYLGGAKIYLKREDLNHTGAHKIN 91

Query: 233 NSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKI 292
           N++ Q LLA+ + KKR+I ETGAG HGV+TAT+  +  LE  +Y+G  D KRQ +NV ++
Sbjct: 92  NTMGQILLARRMGKKRVIAETGAGQHGVATATAAAMFGLECAVYMGAEDIKRQELNVYRM 151

Query: 293 KLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG 350
           +LLG  V  V  G+  LK+AMNEAI+DW  N+ N++YL+G+  GPHPYP +VR+FQS+IG
Sbjct: 152 RLLGAVVVPVTAGSRTLKDAMNEAIRDWVTNVENTYYLLGSVGGPHPYPVMVRNFQSVIG 211

Query: 351 YEIHQQ-LNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGG 398
            E+ +Q L        +++ACVGGGSNA+G+FY F++   +L+ +E+ G
Sbjct: 212 REVKEQVLAAEGRLPDFLVACVGGGSNAMGLFYPFLDDQVQLIGVEAAG 260

Source: Thermacetogenium phaeum DSM 12270

Species: Thermacetogenium phaeum

Genus: Thermacetogenium

Family: Thermoanaerobacteraceae

Order: Thermoanaerobacterales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|253999255|ref|YP_003051318.1| tryptophan synthase subunit beta [Methylovorus glucosetrophus SIP3-4] gi|313201344|ref|YP_004040002.1| tryptophan synthase subunit beta [Methylovorus sp. MP688] gi|253985934|gb|ACT50791.1| tryptophan synthase, beta subunit [Methylovorus glucosetrophus SIP3-4] gi|312440660|gb|ADQ84766.1| tryptophan synthase, beta subunit [Methylovorus sp. MP688]

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 153/209 (73%), Gaps = 4/209 (1%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
           +GRP+PIYY K  S  + G++I+LKREDLN TGAHK+NN++ Q+LLAK + K R+I ETG
Sbjct: 57  VGRPSPIYYAKRWSERVGGARIYLKREDLNHTGAHKVNNTVGQALLAKRMGKPRVIAETG 116

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312
           AG HGV+TAT    + LE ++Y+G  D KRQ  NV ++KLLG TV  V+ G+  LK+A+N
Sbjct: 117 AGQHGVATATIAARMGLECVVYMGSEDVKRQAPNVYRMKLLGATVVPVESGSKTLKDALN 176

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNF-YNKKYILACV 371
           EA++DW  NI N+ Y+IGT +GPHPYP +VRDFQ++IG E  QQ+          ++ACV
Sbjct: 177 EAMRDWVTNISNTFYIIGTVAGPHPYPMMVRDFQAVIGVEAKQQMQEMIGRQPDAVVACV 236

Query: 372 GGGSNALGIFYTFIN-SNFKLVAIESGGI 399
           GGGSNA+GIFY +IN  N +L+ +E+ G+
Sbjct: 237 GGGSNAMGIFYPYINEENVRLIGVEAAGL 265

Source: Methylovorus glucosetrophus SIP3-4

Species: Methylovorus glucosotrophus

Genus: Methylovorus

Family: Methylophilaceae

Order: Methylophilales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|225848666|ref|YP_002728829.1| tryptophan synthase subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225643977|gb|ACN99027.1| tryptophan synthase, beta subunit [Sulfurihydrogenibium azorense Az-Fu1]

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 152/207 (73%), Gaps = 4/207 (1%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+Y+   ++ ++ G+KI+LKREDL  TGAHK+NN++ Q LL K L KKRII ETGA
Sbjct: 58  GRPTPLYFASRLTQVVGGAKIYLKREDLLHTGAHKINNTLGQVLLTKRLGKKRIIAETGA 117

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGVSTAT+  L  LE  IY+GE D +RQ +NV ++KLLG  V +V+ G+  LK+A+NE
Sbjct: 118 GQHGVSTATAAALFGLECTIYMGEEDAERQALNVFRMKLLGAKVEIVKSGSRTLKDAVNE 177

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           A++DW  N+  +HY+IG+A GPHP+P IVRDFQS+IG E+  Q L         I+ACVG
Sbjct: 178 ALRDWVTNVRTTHYIIGSALGPHPFPMIVRDFQSVIGEEVKNQILEIEGKLPDVIVACVG 237

Query: 373 GGSNALGIFYTFI-NSNFKLVAIESGG 398
           GGSNA+GIFY FI +   KLV +E+GG
Sbjct: 238 GGSNAIGIFYPFIEDEEVKLVGVEAGG 264

Source: Sulfurihydrogenibium azorense Az-Fu1

Species: Sulfurihydrogenibium azorense

Genus: Sulfurihydrogenibium

Family: Hydrogenothermaceae

Order: Aquificales

Class: Aquificae

Phylum: Aquificae

Superkingdom: Bacteria

>gi|374993317|ref|YP_004968816.1| tryptophan synthase subunit beta [Desulfosporosinus orientis DSM 765] gi|357211683|gb|AET66301.1| tryptophan synthase, beta subunit [Desulfosporosinus orientis DSM 765]

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/208 (55%), Positives = 156/208 (75%), Gaps = 4/208 (1%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
           +GRP+  Y  K ++  L G++I+LKREDLN TGAHK+NN++ Q LLAK + KKR+I ETG
Sbjct: 64  VGRPSLFYEAKRLAERLGGARIYLKREDLNHTGAHKINNTLGQVLLAKRMGKKRVIAETG 123

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312
           AG HGV+TAT+C L  L  ++Y+GE D +RQN+NV ++KLLG  V  V +G+  LK+A+N
Sbjct: 124 AGQHGVATATACALFALPCVVYMGEEDVRRQNLNVLRMKLLGAEVRTVTHGSCTLKDAIN 183

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACV 371
           EA++DW  N+  + Y  GTA+GPHPYPTIVRDFQ++IG E  +Q LN      + I+ACV
Sbjct: 184 EALRDWVTNVEETFYCFGTAAGPHPYPTIVRDFQTVIGEETREQALNEVGKLPEAIIACV 243

Query: 372 GGGSNALGIFYTFIN-SNFKLVAIESGG 398
           GGGSNA+GIF+ FIN SN +L+ +E+GG
Sbjct: 244 GGGSNAIGIFHPFINDSNVRLIGVEAGG 271

Source: Desulfosporosinus orientis DSM 765

Species: Desulfosporosinus orientis

Genus: Desulfosporosinus

Family: Peptococcaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|253996352|ref|YP_003048416.1| tryptophan synthase subunit beta [Methylotenera mobilis JLW8] gi|253983031|gb|ACT47889.1| tryptophan synthase, beta subunit [Methylotenera mobilis JLW8]

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 154/208 (74%), Gaps = 4/208 (1%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
           +GRP+PIY+ K +S+ + G++I+LKREDLN TGAHK+NN+I Q+LLAK + K R+I ETG
Sbjct: 57  VGRPSPIYHAKRLSDQVGGAQIYLKREDLNHTGAHKINNTIGQALLAKRMGKPRVIAETG 116

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312
           AG HGV+TAT    L LE ++Y+G  D KRQ  NV ++KLLG TV  V+ G+  LK+A+N
Sbjct: 117 AGQHGVATATIAARLGLECVVYMGSEDVKRQAPNVYRMKLLGATVVPVESGSKTLKDALN 176

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACV 371
           EA++DW  NI N+ Y+IGT +GPHPYP +VRDFQ++IG E  +Q L         ++ACV
Sbjct: 177 EAMRDWVTNIHNTFYIIGTVAGPHPYPMMVRDFQAVIGIEAKEQMLEMAGRQPDAVVACV 236

Query: 372 GGGSNALGIFYTFIN-SNFKLVAIESGG 398
           GGGSNA+GIFY +I+  N +L+ +E+ G
Sbjct: 237 GGGSNAMGIFYPYIDVPNVRLIGVEAAG 264

Source: Methylotenera mobilis JLW8

Species: Methylotenera mobilis

Genus: Methylotenera

Family: Methylophilaceae

Order: Methylophilales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
TIGR_CMR|CJE_0397	392	CJE_0397 "tryptophan synthase,	0.492	0.515	0.552	1.1e-53
TIGR_CMR|CHY_1582	402	CHY_1582 "tryptophan synthase,	0.497	0.507	0.492	1.3e-52
TIGR_CMR|BA_1253	397	BA_1253 "tryptophan synthase,	0.497	0.513	0.485	2.1e-52
TIGR_CMR|DET_1487	399	DET_1487 "tryptophan synthase,	0.504	0.518	0.509	3.5e-52
TIGR_CMR|CBU_1155	600	CBU_1155 "N-(5'phosphoribosyl)	0.495	0.338	0.526	4.4e-52
UNIPROTKB|P66984	422	trpB "Tryptophan synthase beta	0.504	0.490	0.502	5.6e-52
TAIR|locus:2160190	470	TSB1 "tryptophan synthase beta	0.497	0.434	0.488	4e-51
TIGR_CMR|SPO_0808	416	SPO_0808 "tryptophan synthase,	0.504	0.497	0.464	5.1e-51
TIGR_CMR|CPS_3526	420	CPS_3526 "tryptophan synthase,	0.480	0.469	0.518	1.3e-50
TAIR|locus:2005543	475	TSB2 "tryptophan synthase beta	0.497	0.429	0.478	2.2e-50

TIGR_CMR|CJE_0397 CJE_0397 "tryptophan synthase, beta subunit" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 116/210 (55%), Positives = 151/210 (71%)

Query:   195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
             +GRPTP+Y+ +N+S   +  +I+LKREDLN TGAHK+NN+IAQ+LLAK + KK+II ETG
Sbjct:    50 VGRPTPLYFARNLSKKYQ-HEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKKIIAETG 108

Query:   255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMN 312
             AG HG++TAT+  LL LE  IY+G  D +RQ +NV K++LLG  ++ VQ G   LKEA  
Sbjct:   109 AGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGLKTLKEATT 168

Query:   313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILAC 370
              AI+ W  +I N  Y++G+A GP+PYP +V  FQSIIG E   QL     NKK  YI+A 
Sbjct:   169 AAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQK--LNKKVDYIIAA 226

Query:   371 VGGGSNALGIFYTFI-NSNFKLVAIESGGI 399
             VGGGSNA GIFY FI + N KL+ IE+GG+
Sbjct:   227 VGGGSNAAGIFYDFIKDENVKLIGIEAGGL 256

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004834 "tryptophan synthase activity" evidence=ISS

TIGR_CMR|CHY_1582 CHY_1582 "tryptophan synthase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 102/207 (49%), Positives = 148/207 (71%)

Query:   196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
             GRPTP+Y+ +++S  + G+KI+LKREDL  TGAHK+NN+I Q LLA+ + KK+++ ETGA
Sbjct:    60 GRPTPLYFAESLSRYVGGAKIYLKREDLAHTGAHKINNTIGQVLLARRMGKKKVVAETGA 119

Query:   256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
             G HGV+TAT+     LE  I++G  D +RQ +NV +++LLG  V  V  G+  LK+AMNE
Sbjct:   120 GQHGVATATAAAKFGLECTIFMGAEDVRRQELNVYRMRLLGAQVESVTSGSRTLKDAMNE 179

Query:   314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN-KKYILACVG 372
             AI+ W  ++ +++Y++G+  GPHPYPTIVRDFQ +IG E   Q+          I+ACVG
Sbjct:   180 AIRYWVTHVRDTYYVLGSVGGPHPYPTIVRDFQKVIGEETKAQILAQEGRLPDLIVACVG 239

Query:   373 GGSNALGIFYTFINSNFKLVAIESGGI 399
             GGSNA+G+FY F+  + +LV +E+ G+
Sbjct:   240 GGSNAIGMFYPFLEEDVRLVGVEAAGL 266

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004834 "tryptophan synthase activity" evidence=ISS

TIGR_CMR|BA_1253 BA_1253 "tryptophan synthase, beta subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 101/208 (48%), Positives = 151/208 (72%)

Query:   195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
             +GR TP+Y+ +N++    G+KI+LKREDLN TGAHK+NN+I Q+LLA  + KK+++ ETG
Sbjct:    56 VGRETPLYFAENMTEYCGGAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETG 115

Query:   255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312
             AG HGV+TAT C LL LE +I++GE D +RQ +NV +++LLG  V  V  G+  LK+A+N
Sbjct:   116 AGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELLGAKVESVAAGSGTLKDAVN 175

Query:   313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLN-FNFYNKKYILACV 371
             EA++ W +++ ++HY++G+  GPHP+P IVRDFQS+IG E  +Q         + ++AC+
Sbjct:   176 EALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACI 235

Query:   372 GGGSNALGIFYTFINSN-FKLVAIESGG 398
             GGGSNA+G+FY F++     L  +E+ G
Sbjct:   236 GGGSNAMGMFYPFVHDEEVALYGVEAAG 263

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004834 "tryptophan synthase activity" evidence=ISS

TIGR_CMR|DET_1487 DET_1487 "tryptophan synthase, beta subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 108/212 (50%), Positives = 150/212 (70%)

Query:   192 SNAL-GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRII 250
             SN   GRPTP+Y  + ++  L G++I+LKREDL  TGAHK+NN++ Q LLA  + KKR+I
Sbjct:    53 SNTFSGRPTPLYLAERLTEHLGGARIYLKREDLAHTGAHKINNALGQGLLALHMGKKRVI 112

Query:   251 CETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LK 308
              ETGAG HGV+TA  C +L LE I+Y+GE+D KRQ +NV ++KL+G  V  V  G+  LK
Sbjct:   113 AETGAGQHGVATAAVCAMLGLECIVYMGEDDIKRQALNVFRMKLMGTEVRSVSSGSRTLK 172

Query:   309 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIH-QQLNFNFYNKKYI 367
             +A+NEA++DW +N   ++Y+IG+  GP PYP +VRDFQ++IG E   Q L         I
Sbjct:   173 DAINEAMRDWVSNPETTYYIIGSVVGPRPYPAMVRDFQAVIGQETKAQSLRQLGGLPDCI 232

Query:   368 LACVGGGSNALGIFYTFI-NSNFKLVAIESGG 398
             +ACVGGGSNA+GIFY FI + + +L+ +E+ G
Sbjct:   233 VACVGGGSNAMGIFYDFIPDQSVRLIGVEAAG 264

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004834 "tryptophan synthase activity" evidence=ISS

TIGR_CMR|CBU_1155 CBU_1155 "N-(5'phosphoribosyl)anthranilate isomerase/tryptophan synthase, beta subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 109/207 (52%), Positives = 147/207 (71%)

Query:   196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
             GRPTP+   K +S+ ++G +IFLKREDL  TGAHK+NNS+ Q LLAK LKK RII ETGA
Sbjct:   261 GRPTPLTEAKRLSDFIQGPRIFLKREDLLHTGAHKINNSLGQCLLAKKLKKTRIIAETGA 320

Query:   256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
             G HGV++AT+C   +L   IY+G  D KRQ  NV+++KLLG  V  V  G+  LK+A+NE
Sbjct:   321 GQHGVASATACAYFDLRCDIYMGAEDMKRQAPNVERMKLLGANVIPVLAGSQTLKDAVNE 380

Query:   314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK-YILACVG 372
             A++DWS +  N+HY +G+A GPHP+P +V  FQS+IG E   Q++     +   I+ACVG
Sbjct:   381 ALRDWSASYENTHYCLGSALGPHPFPEMVALFQSVIGKEAKTQVHEQTGKQPDAIIACVG 440

Query:   373 GGSNALGIFYTFINS-NFKLVAIESGG 398
             GGSNA+GIF  FI+    +L+ +E+GG
Sbjct:   441 GGSNAIGIFSAFIDDPTVRLIGVEAGG 467

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004640 "phosphoribosylanthranilate isomerase activity" evidence=ISS

GO:0004834 "tryptophan synthase activity" evidence=ISS

GO:0006568 "tryptophan metabolic process" evidence=ISS

UNIPROTKB|P66984 trpB "Tryptophan synthase beta chain" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 106/211 (50%), Positives = 146/211 (69%)

Query:   192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 251
             +N  GRP+P+Y    +S     ++IFLKREDLN TG+HK+NN + Q+LLA+ + K R+I 
Sbjct:    75 ANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIA 134

Query:   252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKE 309
             ETGAG HGV+TAT+C LL L+ +IY+G  D  RQ +NV +++LLG  V  VQ G+  LK+
Sbjct:   135 ETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKD 194

Query:   310 AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN-KKYIL 368
             A+NEA +DW  N  N++Y  GTA+GPHP+PT+VRDFQ IIG E   Q+          ++
Sbjct:   195 AINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVV 254

Query:   369 ACVGGGSNALGIFYTFINS-NFKLVAIESGG 398
             ACVGGGSNA+GIF+ F++    +LV  E+ G
Sbjct:   255 ACVGGGSNAIGIFHAFLDDPGVRLVGFEAAG 285

GO:0000162 "tryptophan biosynthetic process" evidence=IDA

GO:0004834 "tryptophan synthase activity" evidence=IDA

GO:0040007 "growth" evidence=IMP

TAIR|locus:2160190 TSB1 "tryptophan synthase beta-subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 104/213 (48%), Positives = 149/213 (69%)

Query:   195 LGRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI 249
             +GR +P+Y+ + ++   +     G  I+LKREDLN TGAHK+NN++AQ+LLAK L KKRI
Sbjct:   125 VGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRI 184

Query:   250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--L 307
             I ETGAG HGV+TAT C    LE IIY+G  D +RQ +NV +++LLG  V  V  G   L
Sbjct:   185 IAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATL 244

Query:   308 KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYI 367
             K+A +EAI+DW  N+  +HY++G+ +GPHPYP +VRDF ++IG E  +Q    +  K  +
Sbjct:   245 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDV 304

Query:   368 L-ACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
             L ACVGGGSNA+G+F+ F+N +  +++ +E+ G
Sbjct:   305 LVACVGGGSNAMGLFHEFVNDTEVRMIGVEAAG 337

GO:0003824 "catalytic activity" evidence=IEA

GO:0004834 "tryptophan synthase activity" evidence=IEA;IMP;IDA

GO:0006568 "tryptophan metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000162 "tryptophan biosynthetic process" evidence=TAS

GO:0009684 "indoleacetic acid biosynthetic process" evidence=TAS

GO:0006979 "response to oxidative stress" evidence=IEP

TIGR_CMR|SPO_0808 SPO_0808 "tryptophan synthase, beta subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 98/211 (46%), Positives = 150/211 (71%)

Query:   192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 251
             +N +GRP+P+Y+ + ++  L G+K+++KR++LN TGAHK+NN + Q +LA+ + K RII 
Sbjct:    60 TNYVGRPSPLYFAERLTEHLGGAKVYMKRDELNHTGAHKINNVLGQIILARRMGKTRIIA 119

Query:   252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKE 309
             ETGAG HGV+TAT C    L+ ++Y+G +D +RQ  NV +++LLG  V  V  G   LK+
Sbjct:   120 ETGAGQHGVATATVCAKFGLKCVVYMGAHDVRRQAPNVFRMRLLGAEVIPVTSGRGTLKD 179

Query:   310 AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL-NFNFYNKKYIL 368
             AMN+A++DW  N+ ++ Y IGT +GPHPYP +VRDFQSIIG E  +Q+          I+
Sbjct:   180 AMNDALRDWVTNVRDTFYCIGTVAGPHPYPAMVRDFQSIIGKEAKEQMMKAEGRLPDTII 239

Query:   369 ACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
             A +GGGSNA+G+FY F++ ++  ++ +E+GG
Sbjct:   240 AAIGGGSNAMGLFYPFLDDTSVNIIGVEAGG 270

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004834 "tryptophan synthase activity" evidence=ISS

TIGR_CMR|CPS_3526 CPS_3526 "tryptophan synthase, beta subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 110/212 (51%), Positives = 149/212 (70%)

Query:   196 GRPTPIYYCKNI-SNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
             GRPTP+  C+NI  N L  +KI+LKREDL   GAHK N  + Q+LLAK + K  II ETG
Sbjct:    67 GRPTPLTCCRNIVKNPL--AKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETG 124

Query:   255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312
             AG HGV+TA +C LL L+  +Y+G  D +RQ  NV +++L+G  V  V  G+  LK+A+N
Sbjct:   125 AGQHGVATAIACSLLGLKCKVYMGAVDCQRQQPNVFRMELMGAEVIPVTAGSGTLKDAVN 184

Query:   313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK-----YI 367
             EA++DWS N  N+HYL+GTA+GPHP+PTIVR+FQ +IG E   Q    FY+++     Y+
Sbjct:   185 EALRDWSANYENAHYLLGTAAGPHPFPTIVREFQKMIGEEAKAQ----FYDEEGRLPDYV 240

Query:   368 LACVGGGSNALGIFYTFINSN-FKLVAIESGG 398
             +ACVGGGSNA+G+F+ FI     KL+ +E+GG
Sbjct:   241 IACVGGGSNAIGMFHDFIKEEGVKLIGVEAGG 272

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004834 "tryptophan synthase activity" evidence=ISS

TAIR|locus:2005543 TSB2 "tryptophan synthase beta-subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 102/213 (47%), Positives = 149/213 (69%)

Query:   195 LGRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI 249
             +GR +P+Y+ + ++   +     G  I+LKREDLN TGAHK+NN++AQ+LLAK L KKRI
Sbjct:   130 VGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRI 189

Query:   250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--L 307
             I ETGAG HGV+TAT C    L+ IIY+G  D +RQ +NV +++LLG  V  V  G   L
Sbjct:   190 IAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATL 249

Query:   308 KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYI 367
             K+A +EAI+DW  N+  +HY++G+ +GPHPYP +VRDF ++IG E  +Q    +  K  +
Sbjct:   250 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDV 309

Query:   368 L-ACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
             L ACVGGGSNA+G+F+ F++ +  +++ +E+ G
Sbjct:   310 LVACVGGGSNAMGLFHEFVDDTEVRMIGVEAAG 342

GO:0003824 "catalytic activity" evidence=IEA

GO:0004834 "tryptophan synthase activity" evidence=IEA;ISS;IMP

GO:0006568 "tryptophan metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0000162 "tryptophan biosynthetic process" evidence=TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O28672	TRPB1_ARCFU	4, ., 2, ., 1, ., 2, 0	0.5436	0.4926	0.5088	yes	N/A
B1YLS4	TRPB_EXIS2	4, ., 2, ., 1, ., 2, 0	0.5023	0.5048	0.5187	yes	N/A
Q9V1G8	TRPB1_PYRAB	4, ., 2, ., 1, ., 2, 0	0.5314	0.4951	0.5231	yes	N/A
Q822W3	TRPB2_CHLCV	4, ., 2, ., 1, ., 2, 0	0.5285	0.5048	0.5294	yes	N/A
O68905	TRPB_MYCIT	4, ., 2, ., 1, ., 2, 0	0.5165	0.5024	0.4893	yes	N/A
Q8F149	TRPB_LEPIN	4, ., 2, ., 1, ., 2, 0	0.5093	0.5024	0.5188	yes	N/A
Q2Y7R4	TRPB_NITMU	4, ., 2, ., 1, ., 2, 0	0.5024	0.4975	0.5125	yes	N/A
B2V8W5	TRPB_SULSY	4, ., 2, ., 1, ., 2, 0	0.5555	0.4951	0.4903	yes	N/A
A1VRR7	TRPB_POLNA	4, ., 2, ., 1, ., 2, 0	0.5045	0.5170	0.4884	yes	N/A
Q47HQ5	TRPB_DECAR	4, ., 2, ., 1, ., 2, 0	0.5288	0.4975	0.5112	yes	N/A
B0K8T6	TRPB_THEP3	4, ., 2, ., 1, ., 2, 0	0.5555	0.4951	0.5191	yes	N/A
Q9YGB0	TRPB1_PYRKO	4, ., 2, ., 1, ., 2, 0	0.5263	0.5024	0.5295	yes	N/A
A5N7P0	TRPB_CLOK5	4, ., 2, ., 1, ., 2, 0	0.5192	0.4975	0.5151	yes	N/A
A1AXS9	TRPB_RUTMC	4, ., 2, ., 1, ., 2, 0	0.5288	0.4975	0.5087	yes	N/A
A5CVH4	TRPB_VESOH	4, ., 2, ., 1, ., 2, 0	0.5362	0.4951	0.5062	yes	N/A
Q8R9M9	TRPB_THETN	4, ., 2, ., 1, ., 2, 0	0.5603	0.4951	0.5191	yes	N/A
B2FNZ1	TRPB_STRMK	4, ., 2, ., 1, ., 2, 0	0.5048	0.4975	0.5037	yes	N/A
Q1H0M1	TRPB_METFK	4, ., 2, ., 1, ., 2, 0	0.5240	0.4975	0.51	yes	N/A
Q8U093	TRPB1_PYRFU	4, ., 2, ., 1, ., 2, 0	0.5507	0.4951	0.5231	yes	N/A
Q72U05	TRPB_LEPIC	4, ., 2, ., 1, ., 2, 0	0.5093	0.5024	0.5188	yes	N/A
Q60179	TRPB_METJA	4, ., 2, ., 1, ., 2, 0	0.5169	0.4951	0.5024	yes	N/A
A6LU96	TRPB_CLOB8	4, ., 2, ., 1, ., 2, 0	0.5314	0.4951	0.5191	yes	N/A
P50909	TRPB1_THEMA	4, ., 2, ., 1, ., 2, 0	0.5436	0.4926	0.5192	yes	N/A
B9E151	TRPB_CLOK1	4, ., 2, ., 1, ., 2, 0	0.5192	0.4975	0.5151	yes	N/A
B0K2T9	TRPB_THEPX	4, ., 2, ., 1, ., 2, 0	0.5507	0.4951	0.5191	yes	N/A
A2SHS4	TRPB_METPP	4, ., 2, ., 1, ., 2, 0	0.5048	0.4975	0.4951	yes	N/A
B1J4B1	TRPB_PSEPW	4, ., 2, ., 1, ., 2, 0	0.5144	0.4975	0.5037	yes	N/A
Q1IH20	TRPB_PSEE4	4, ., 2, ., 1, ., 2, 0	0.5096	0.4975	0.5037	yes	N/A
Q6FEF1	TRPB_ACIAD	4, ., 2, ., 1, ., 2, 0	0.5336	0.4975	0.5062	yes	N/A
A6TM76	TRPB_ALKMQ	4, ., 2, ., 1, ., 2, 0	0.5384	0.4975	0.51	yes	N/A
P66984	TRPB_MYCTU	4, ., 2, ., 1, ., 2, 0	0.5023	0.5048	0.4905	yes	N/A
Q126M1	TRPB_POLSJ	4, ., 2, ., 1, ., 2, 0	0.5215	0.4975	0.4563	yes	N/A
B4SQU8	TRPB_STRM5	4, ., 2, ., 1, ., 2, 0	0.5048	0.4975	0.5037	yes	N/A
Q0AGX5	TRPB_NITEC	4, ., 2, ., 1, ., 2, 0	0.5048	0.4975	0.5112	yes	N/A
Q82WI2	TRPB_NITEU	4, ., 2, ., 1, ., 2, 0	0.5144	0.4975	0.5138	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.20	LOW CONFIDENCE prediction!
3rd Layer	4.2.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	410
PRK04346	397	PRK04346, PRK04346, tryptophan synthase subunit be	1e-108
COG0133	396	COG0133, TrpB, Tryptophan synthase beta chain [Ami	1e-102
PRK04346	397	PRK04346, PRK04346, tryptophan synthase subunit be	1e-100
cd06446	365	cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr	9e-99
PRK13028	402	PRK13028, PRK13028, tryptophan synthase subunit be	4e-95
COG0133	396	COG0133, TrpB, Tryptophan synthase beta chain [Ami	2e-93
TIGR00263	385	TIGR00263, trpB, tryptophan synthase, beta subunit	5e-92
cd06446	365	cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr	5e-90
PRK13028	402	PRK13028, PRK13028, tryptophan synthase subunit be	2e-89
TIGR00263	385	TIGR00263, trpB, tryptophan synthase, beta subunit	5e-84
PRK13803	610	PRK13803, PRK13803, bifunctional phosphoribosylant	2e-82
PLN02618	410	PLN02618, PLN02618, tryptophan synthase, beta chai	9e-81
PRK13803	610	PRK13803, PRK13803, bifunctional phosphoribosylant	5e-75
PLN02618	410	PLN02618, PLN02618, tryptophan synthase, beta chai	8e-75
PRK13802	695	PRK13802, PRK13802, bifunctional indole-3-glycerol	1e-66
PRK13802	695	PRK13802, PRK13802, bifunctional indole-3-glycerol	8e-64
cd00640	244	cd00640, Trp-synth-beta_II, Tryptophan synthase be	3e-39
cd00640	244	cd00640, Trp-synth-beta_II, Tryptophan synthase be	3e-35
COG1350	432	COG1350, COG1350, Predicted alternative tryptophan	3e-27
TIGR01415	419	TIGR01415, trpB_rel, pyridoxal-phosphate dependent	3e-26
pfam00291	295	pfam00291, PALP, Pyridoxal-phosphate dependent enz	5e-25
TIGR01415	419	TIGR01415, trpB_rel, pyridoxal-phosphate dependent	1e-24
COG1350	432	COG1350, COG1350, Predicted alternative tryptophan	3e-24
pfam00291	295	pfam00291, PALP, Pyridoxal-phosphate dependent enz	2e-23
PRK12391	427	PRK12391, PRK12391, tryptophan synthase subunit be	3e-22
PRK12391	427	PRK12391, PRK12391, tryptophan synthase subunit be	9e-19
COG1171	347	COG1171, IlvA, Threonine dehydratase [Amino acid t	2e-16
COG1171	347	COG1171, IlvA, Threonine dehydratase [Amino acid t	5e-16
cd01562	304	cd01562, Thr-dehyd, Threonine dehydratase: The fir	3e-10
cd01562	304	cd01562, Thr-dehyd, Threonine dehydratase: The fir	1e-09
cd01563	324	cd01563, Thr-synth_1, Threonine synthase is a pyri	1e-09
cd01563	324	cd01563, Thr-synth_1, Threonine synthase is a pyri	2e-08
TIGR02079	409	TIGR02079, THD1, threonine dehydratase	7e-06
TIGR02079	409	TIGR02079, THD1, threonine dehydratase	8e-05
TIGR01124	499	TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b	2e-04
PRK06381	319	PRK06381, PRK06381, threonine synthase; Validated	3e-04
TIGR01124	499	TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b	5e-04
PRK08198	404	PRK08198, PRK08198, threonine dehydratase; Provisi	0.001
PRK08198	404	PRK08198, PRK08198, threonine dehydratase; Provisi	0.001
COG0498	411	COG0498, ThrC, Threonine synthase [Amino acid tran	0.001
PLN02550	591	PLN02550, PLN02550, threonine dehydratase	0.001
PRK08639	420	PRK08639, PRK08639, threonine dehydratase; Validat	0.002
PRK08639	420	PRK08639, PRK08639, threonine dehydratase; Validat	0.002
PRK09224	504	PRK09224, PRK09224, threonine dehydratase; Reviewe	0.002
PRK06608	338	PRK06608, PRK06608, threonine dehydratase; Provisi	0.002
PRK06608	338	PRK06608, PRK06608, threonine dehydratase; Provisi	0.002
cd06449	307	cd06449, ACCD, Aminocyclopropane-1-carboxylate dea	0.003
PLN02550	591	PLN02550, PLN02550, threonine dehydratase	0.004

>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated

 Score =  323 bits (831), Expect = e-108
 Identities = 115/228 (50%), Positives = 160/228 (70%), Gaps = 17/228 (7%)

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
            ++  K Y+           GRPTP+Y+ + +S  L G+KI+LKREDLN TGAHK+NN +
Sbjct: 47  LDYLLKNYV-----------GRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVL 95

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
            Q+LLAK + KKRII ETGAG HGV+TAT+  LL LE +IY+G  D +RQ +NV ++KLL
Sbjct: 96  GQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLL 155

Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
           G  V  V  G+  LK+A+NEA++DW  N+ ++HYLIG+ +GPHPYPT+VRDFQS+IG E 
Sbjct: 156 GAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEA 215

Query: 354 HQQLNFNFYNK--KYILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
             Q+      +    ++ACVGGGSNA+GIF+ FI+  + +L+ +E+ G
Sbjct: 216 KAQIL-EKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAG 262

Length = 397

>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism]

 Score =  307 bits (788), Expect = e-102
 Identities = 113/228 (49%), Positives = 159/228 (69%), Gaps = 18/228 (7%)

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
            ++  K Y            GRPTP+Y+ + ++  L G+KI+LKREDLN TGAHK+NN++
Sbjct: 45  LDYLLKDYA-----------GRPTPLYFAERLTEHL-GAKIYLKREDLNHTGAHKINNAL 92

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
            Q+LLAK + K RII ETGAG HGV+TAT+  L  LE +IY+G  D +RQ +NV +++LL
Sbjct: 93  GQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLL 152

Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
           G  V  V  G+  LK+A+NEA++DW  N+ ++HYLIG+A+GPHPYPTIVRDFQS+IG E 
Sbjct: 153 GAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEA 212

Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFINS-NFKLVAIESGG 398
             Q+      +    ++ACVGGGSNA+GIF+ FI+  + +L+ +E+ G
Sbjct: 213 KAQI-LEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAG 259

Length = 396

>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated

 Score =  303 bits (779), Expect = e-100
 Identities = 106/188 (56%), Positives = 141/188 (75%), Gaps = 5/188 (2%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+Y+ + +S  L G+KI+LKREDLN TGAHK+NN + Q+LLAK + KKRII ETGA
Sbjct: 56  GRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGA 115

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV+TAT+  LL LE +IY+G  D +RQ +NV ++KLLG  V  V  G+  LK+A+NE
Sbjct: 116 GQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNE 175

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK--KYILACV 188
           A++DW  N+ ++HYLIG+ +GPHPYPT+VRDFQS+IG E   Q+      +    ++ACV
Sbjct: 176 ALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQIL-EKEGRLPDAVVACV 234

Query: 189 GGGSNALG 196
           GGGSNA+G
Sbjct: 235 GGGSNAIG 242

Length = 397

>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

 Score =  298 bits (765), Expect = 9e-99
 Identities = 114/214 (53%), Positives = 155/214 (72%), Gaps = 4/214 (1%)

Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           + +GRPTP+Y  K +S  L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + KKR+I E
Sbjct: 29  DYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAE 88

Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV+TAT+C L  LE  IY+G  D +RQ +NV +++LLG  V  V  G+  LK+A
Sbjct: 89  TGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDA 148

Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
           ++EAI+DW  N+ ++HYL+G+  GPHPYP +VRDFQS+IG E  +Q L         ++A
Sbjct: 149 ISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIA 208

Query: 370 CVGGGSNALGIFYTFINS-NFKLVAIESGGISKK 402
           CVGGGSNA G+FY FIN  + KL+ +E+GG   +
Sbjct: 209 CVGGGSNAAGLFYPFINDKDVKLIGVEAGGCGLE 242

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. Length = 365

>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional

 Score =  290 bits (745), Expect = 4e-95
 Identities = 107/211 (50%), Positives = 145/211 (68%), Gaps = 12/211 (5%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+Y+ K +S  L G++I+LKREDLN TGAHK+NN + Q+LLAK + KKR+I ETGA
Sbjct: 60  GRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGA 119

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGV+TAT+  L  LE  IY+GE D +RQ+ NV ++KLLG  V  V  G   LKEA++ 
Sbjct: 120 GQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDS 179

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-----KYIL 368
           A +D+  +  N+HY IG+  GPHP+P +VRDFQS+IG E  +Q    F          ++
Sbjct: 180 AFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQ----FLEMTGRLPDAVV 235

Query: 369 ACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           ACVGGGSNA+G+F  F++  + +LV +E  G
Sbjct: 236 ACVGGGSNAIGLFSAFLDDESVRLVGVEPAG 266

Length = 402

>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism]

 Score =  285 bits (732), Expect = 2e-93
 Identities = 104/188 (55%), Positives = 141/188 (75%), Gaps = 6/188 (3%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+Y+ + ++  L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + K RII ETGA
Sbjct: 54  GRPTPLYFAERLTEHL-GAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGA 112

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV+TAT+  L  LE +IY+G  D +RQ +NV +++LLG  V  V  G+  LK+A+NE
Sbjct: 113 GQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINE 172

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
           A++DW  N+ ++HYLIG+A+GPHPYPTIVRDFQS+IG E   Q+      +    ++ACV
Sbjct: 173 ALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQI-LEKEGRLPDAVVACV 231

Query: 189 GGGSNALG 196
           GGGSNA+G
Sbjct: 232 GGGSNAIG 239

Length = 396

>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit

 Score =  281 bits (722), Expect = 5e-92
 Identities = 112/222 (50%), Positives = 159/222 (71%), Gaps = 6/222 (2%)

Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 251
            N  GRPTP+ +  N++  L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + KKRII 
Sbjct: 44  RNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIA 103

Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKE 309
           ETGAG HGV+TAT+  LL L+  +Y+G  D +RQ  NV +++LLG  V  V  G+  LK+
Sbjct: 104 ETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKD 163

Query: 310 AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYIL 368
           A+NEA++DW  ++ ++HY++G+A GPHP+PT+VRDFQS+IG E  +Q L         ++
Sbjct: 164 AVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVI 223

Query: 369 ACVGGGSNALGIFYTFI-NSNFKLVAIESG--GISKKRTASR 407
           ACVGGGSNA+GIFY FI + + +L+ +E+G  GI   + A+ 
Sbjct: 224 ACVGGGSNAIGIFYAFIDDPSVQLIGVEAGGLGIDTDKHAAT 265

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model [Amino acid biosynthesis, Aromatic amino acid family]. Length = 385

>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

 Score =  275 bits (707), Expect = 5e-90
 Identities = 104/187 (55%), Positives = 137/187 (73%), Gaps = 3/187 (1%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+Y  K +S  L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + KKR+I ETGA
Sbjct: 32  GRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAETGA 91

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV+TAT+C L  LE  IY+G  D +RQ +NV +++LLG  V  V  G+  LK+A++E
Sbjct: 92  GQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISE 151

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 189
           AI+DW  N+ ++HYL+G+  GPHPYP +VRDFQS+IG E  +Q L         ++ACVG
Sbjct: 152 AIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVG 211

Query: 190 GGSNALG 196
           GGSNA G
Sbjct: 212 GGSNAAG 218

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. Length = 365

>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional

 Score =  275 bits (706), Expect = 2e-89
 Identities = 101/191 (52%), Positives = 133/191 (69%), Gaps = 11/191 (5%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+Y+ K +S  L G++I+LKREDLN TGAHK+NN + Q+LLAK + KKR+I ETGA
Sbjct: 60  GRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGA 119

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV+TAT+  L  LE  IY+GE D +RQ+ NV ++KLLG  V  V  G   LKEA++ 
Sbjct: 120 GQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDS 179

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-----KYIL 185
           A +D+  +  N+HY IG+  GPHP+P +VRDFQS+IG E  +Q    F          ++
Sbjct: 180 AFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQ----FLEMTGRLPDAVV 235

Query: 186 ACVGGGSNALG 196
           ACVGGGSNA+G
Sbjct: 236 ACVGGGSNAIG 246

Length = 402

>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit

 Score =  261 bits (669), Expect = 5e-84
 Identities = 100/187 (53%), Positives = 139/187 (74%), Gaps = 3/187 (1%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+ +  N++  L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + KKRII ETGA
Sbjct: 48  GRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGA 107

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV+TAT+  LL L+  +Y+G  D +RQ  NV +++LLG  V  V  G+  LK+A+NE
Sbjct: 108 GQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNE 167

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 189
           A++DW  ++ ++HY++G+A GPHP+PT+VRDFQS+IG E  +Q L         ++ACVG
Sbjct: 168 ALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVG 227

Query: 190 GGSNALG 196
           GGSNA+G
Sbjct: 228 GGSNAIG 234

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model [Amino acid biosynthesis, Aromatic amino acid family]. Length = 385

>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

 Score =  263 bits (675), Expect = 2e-82
 Identities = 114/222 (51%), Positives = 159/222 (71%), Gaps = 11/222 (4%)

Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPTP+   K +S+I  G++I+LKREDLN TG+HK+NN++ Q+LLAK + K RII E
Sbjct: 266 NYAGRPTPLTEAKRLSDIY-GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAE 324

Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV+TAT+C L  L+  I++GE D KRQ +NV+++KLLG  V  V  G+  LK+A
Sbjct: 325 TGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDA 384

Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL---NFNFYNKKYI 367
           +NEAI+DW  ++ ++HYLIG+A GPHPYP +V  FQS+IG E  +QL        +   I
Sbjct: 385 VNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPD--AI 442

Query: 368 LACVGGGSNALGIFYTFIN-SNFKLVAIESG--GISKKRTAS 406
           +ACVGGGSNA+GIFY F++  + KL+ +E+G  G++    A+
Sbjct: 443 IACVGGGSNAIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAA 484

Length = 610

>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain

 Score =  253 bits (649), Expect = 9e-81
 Identities = 107/213 (50%), Positives = 150/213 (70%), Gaps = 9/213 (4%)

Query: 195 LGRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI 249
           +GR TP+Y+ + ++   K     G +I+LKREDLN TGAHK+NN++AQ+LLAK L KKRI
Sbjct: 63  VGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRI 122

Query: 250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NL 307
           I ETGAG HGV+TAT C    LE I+Y+G  D +RQ +NV +++LLG  V  V  G   L
Sbjct: 123 IAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATL 182

Query: 308 KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYI 367
           K+A +EAI+DW  N+  +HY++G+ +GPHPYP +VRDF S+IG E  +Q    +  K  +
Sbjct: 183 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDV 242

Query: 368 L-ACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           L ACVGGGSNA+G+F+ FI+  + +L+ +E+ G
Sbjct: 243 LVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAG 275

Length = 410

>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

 Score =  244 bits (624), Expect = 5e-75
 Identities = 103/189 (54%), Positives = 139/189 (73%), Gaps = 8/189 (4%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+   K +S+I  G++I+LKREDLN TG+HK+NN++ Q+LLAK + K RII ETGA
Sbjct: 269 GRPTPLTEAKRLSDIY-GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGA 327

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV+TAT+C L  L+  I++GE D KRQ +NV+++KLLG  V  V  G+  LK+A+NE
Sbjct: 328 GQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNE 387

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL---NFNFYNKKYILAC 187
           AI+DW  ++ ++HYLIG+A GPHPYP +V  FQS+IG E  +QL        +   I+AC
Sbjct: 388 AIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPD--AIIAC 445

Query: 188 VGGGSNALG 196
           VGGGSNA+G
Sbjct: 446 VGGGSNAIG 454

Length = 610

>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain

 Score =  238 bits (609), Expect = 8e-75
 Identities = 101/192 (52%), Positives = 135/192 (70%), Gaps = 8/192 (4%)

Query: 13  GRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRII 67
           GR TP+Y+ + ++   K     G +I+LKREDLN TGAHK+NN++AQ+LLAK L KKRII
Sbjct: 64  GRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRII 123

Query: 68  CETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLK 125
            ETGAG HGV+TAT C    LE I+Y+G  D +RQ +NV +++LLG  V  V  G   LK
Sbjct: 124 AETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLK 183

Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
           +A +EAI+DW  N+  +HY++G+ +GPHPYP +VRDF S+IG E  +Q    +  K  +L
Sbjct: 184 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVL 243

Query: 186 -ACVGGGSNALG 196
            ACVGGGSNA+G
Sbjct: 244 VACVGGGSNAMG 255

Length = 410

>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

 Score =  224 bits (571), Expect = 1e-66
 Identities = 106/240 (44%), Positives = 154/240 (64%), Gaps = 23/240 (9%)

Query: 169 EIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILK-----GSKIFLKREDL 223
           E H++L     N++Y+           GRP+P+      +  +K      +++FLKREDL
Sbjct: 310 EFHKELAT--LNQRYV-----------GRPSPLTEAPRFAERVKEKTGLDARVFLKREDL 356

Query: 224 NFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYK 283
           N TGAHK+NN++ Q+LL K + K R+I ETGAG HGV+TAT C +L L+  IY+G+ D +
Sbjct: 357 NHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDAR 416

Query: 284 RQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 341
           RQ +NV ++++LG  V  V  G+  LK+A+NEA++DW  N+ ++HYL+GT +GPHP+P +
Sbjct: 417 RQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAM 476

Query: 342 VRDFQSIIGYEIHQQLN--FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGG 398
           VRDFQ IIG E  QQL   +   +   I ACVGGGSNA+G+   F++     L   E+GG
Sbjct: 477 VRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLDDERVNLYGYEAGG 536

Length = 695

>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

 Score =  216 bits (552), Expect = 8e-64
 Identities = 96/193 (49%), Positives = 135/193 (69%), Gaps = 9/193 (4%)

Query: 13  GRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRII 67
           GRP+P+      +  +K      +++FLKREDLN TGAHK+NN++ Q+LL K + K R+I
Sbjct: 324 GRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVI 383

Query: 68  CETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LK 125
            ETGAG HGV+TAT C +L L+  IY+G+ D +RQ +NV ++++LG  V  V  G+  LK
Sbjct: 384 AETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILK 443

Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLN--FNFYNKKY 183
           +A+NEA++DW  N+ ++HYL+GT +GPHP+P +VRDFQ IIG E  QQL   +   +   
Sbjct: 444 DAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDA 503

Query: 184 ILACVGGGSNALG 196
           I ACVGGGSNA+G
Sbjct: 504 ICACVGGGSNAIG 516

Length = 695

>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

 Score =  140 bits (355), Expect = 3e-39
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 22/208 (10%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK---FLKKKRIICETGA 255
           TP+   K +S +  G+ I+LK E LN TG+ K   ++   LLA+    L K  II  TG 
Sbjct: 1   TPLVRLKRLSKLG-GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTG- 58

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 315
           G  G++ A +   L L+  I + E         V +++ LG  V LV  G+  +A+  A 
Sbjct: 59  GNTGIALAAAAARLGLKCTIVMPEGA---SPEKVAQMRALGAEVVLVP-GDFDDAIALAK 114

Query: 316 KDWSNNILNSHYLIGTASGPHPY-PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
           +    +   ++Y+       + +        Q  IG EI +QL         ++  VGGG
Sbjct: 115 ELAEED-PGAYYV-------NQFDNPANIAGQGTIGLEILEQLGGQ--KPDAVVVPVGGG 164

Query: 375 SNALGIFYTF--INSNFKLVAIESGGIS 400
            N  GI      +  N K++ +E   ++
Sbjct: 165 GNIAGIARALKELLPNVKVIGVEPEVVT 192

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244

>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

 Score =  129 bits (328), Expect = 3e-35
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 20/185 (10%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK---FLKKKRIICETGA 72
           TP+   K +S +  G+ I+LK E LN TG+ K   ++   LLA+    L K  II  TG 
Sbjct: 1   TPLVRLKRLSKLG-GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTG- 58

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
           G  G++ A +   L L+  I + E         V +++ LG  V LV  G+  +A+  A 
Sbjct: 59  GNTGIALAAAAARLGLKCTIVMPEGA---SPEKVAQMRALGAEVVLVP-GDFDDAIALAK 114

Query: 133 KDWSNNILNSHYLIGTASGPHPY-PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
           +    +   ++Y+       + +        Q  IG EI +QL         ++  VGGG
Sbjct: 115 ELAEED-PGAYYV-------NQFDNPANIAGQGTIGLEILEQLGGQ--KPDAVVVPVGGG 164

Query: 192 SNALG 196
            N  G
Sbjct: 165 GNIAG 169

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244

>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

 Score =  112 bits (281), Expect = 3e-27
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 31/230 (13%)

Query: 196 GRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
           GRPTP+   KN+   L   ++I+ K E +  TG+HK+N ++AQ+  AK    KR+  ETG
Sbjct: 76  GRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETG 135

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY-----LVQYGN--L 307
           AG  G + + +  L  L++ +++    Y ++      ++L G  V      L ++G   L
Sbjct: 136 AGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKIL 195

Query: 308 KE----------AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357
           KE          A++EAI+    N  N+ Y +G+          V   Q++IG E  +QL
Sbjct: 196 KEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVL------NHVLLHQTVIGLEAKKQL 248

Query: 358 NFNFYNKKYILACVGGGSNALGIFYTFIN------SNFKLVAIESGGISK 401
                +   I+ CVGGGSN  G+ Y FI          + +A+E     K
Sbjct: 249 EQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPK 298

Length = 432

>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like enzyme

 Score =  109 bits (273), Expect = 3e-26
 Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 31/226 (13%)

Query: 195 LGRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICET 253
           +GRPTP+   K +  +L   ++I+ K E ++ TG+HK+N +IAQ+  AK    KR++ ET
Sbjct: 65  IGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTET 124

Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTV-------------Y 300
           GAG  G + + +  L  LE  +++    + ++      ++L G  V              
Sbjct: 125 GAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREV 184

Query: 301 LVQY----GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ 356
           L +     G+L  A++EAI+   ++  ++ Y +G+          V   Q++IG E  +Q
Sbjct: 185 LKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLNH------VLLHQTVIGLEAKKQ 237

Query: 357 LNFNFYNKKYILACVGGGSNALGIFYTFI------NSNFKLVAIES 396
           +     +   I+ CVGGGSN  G+ + F+        + + +A E 
Sbjct: 238 MEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEP 283

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found [Unknown function, Enzymes of unknown specificity]. Length = 419

>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme

 Score =  103 bits (258), Expect = 5e-25
 Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 15/206 (7%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
              PTP+    +      G++++LK E LN TG+ K     A  LL + L++   + E  
Sbjct: 4   GIGPTPLVRLPSPLL---GARVYLKLESLNPTGSFKDR--GAAYLLLRALERGATVVEAS 58

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 314
           +G  G + A +   L L+  I + E         +  ++ LG  V LV      +   E 
Sbjct: 59  SGNTGRALAAAAARLGLKVTIVVPEGASP---GKLLLMRALGAEVILVVSEGDYDDALEL 115

Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
            ++ +  +       G           V      IG EI +QL     +   ++  VGGG
Sbjct: 116 AEEAAELL---AAYDGPIPLGQYNNPNVIAGYKTIGLEILEQLGQG--DPDAVVVPVGGG 170

Query: 375 SNALGI--FYTFINSNFKLVAIESGG 398
             A GI      +    +++ +E  G
Sbjct: 171 GLAAGIARGLKELGPGIRVIGVEPEG 196

Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295

>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like enzyme

 Score =  104 bits (260), Expect = 1e-24
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 25/206 (12%)

Query: 13  GRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 71
           GRPTP+   K +  +L   ++I+ K E ++ TG+HK+N +IAQ+  AK    KR++ ETG
Sbjct: 66  GRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETG 125

Query: 72  AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTV-------------YL 118
           AG  G + + +  L  LE  +++    + ++      ++L G  V              L
Sbjct: 126 AGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVL 185

Query: 119 VQY----GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 174
            +     G+L  A++EAI+   ++  ++ Y +G+          V   Q++IG E  +Q+
Sbjct: 186 KEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLNH------VLLHQTVIGLEAKKQM 238

Query: 175 NFNFYNKKYILACVGGGSNALGRPTP 200
                +   I+ CVGGGSN  G   P
Sbjct: 239 EEAGEDPDVIIGCVGGGSNFAGLAFP 264

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found [Unknown function, Enzymes of unknown specificity]. Length = 419

>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

 Score =  103 bits (259), Expect = 3e-24
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 30/222 (13%)

Query: 13  GRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 71
           GRPTP+   KN+   L   ++I+ K E +  TG+HK+N ++AQ+  AK    KR+  ETG
Sbjct: 76  GRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETG 135

Query: 72  AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY-----LVQYGN--L 124
           AG  G + + +  L  L++ +++    Y ++      ++L G  V      L ++G   L
Sbjct: 136 AGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKIL 195

Query: 125 KE----------AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 174
           KE          A++EAI+    N  N+ Y +G+          V   Q++IG E  +QL
Sbjct: 196 KEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVL------NHVLLHQTVIGLEAKKQL 248

Query: 175 NFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKI 216
                +   I+ CVGGGSN  G   P      I + L+G K 
Sbjct: 249 EQAGEDPDVIIGCVGGGSNFAGLTYPF-----IGDKLRGKKE 285

Length = 432

>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme

 Score = 98.6 bits (246), Expect = 2e-23
 Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 13/183 (7%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 73
            PTP+    +      G++++LK E LN TG+ K     A  LL + L++   + E  +G
Sbjct: 6   GPTPLVRLPSPLL---GARVYLKLESLNPTGSFKDR--GAAYLLLRALERGATVVEASSG 60

Query: 74  MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIK 133
             G + A +   L L+  I + E         +  ++ LG  V LV      +   E  +
Sbjct: 61  NTGRALAAAAARLGLKVTIVVPEGASP---GKLLLMRALGAEVILVVSEGDYDDALELAE 117

Query: 134 DWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSN 193
           + +  +       G           V      IG EI +QL     +   ++  VGGG  
Sbjct: 118 EAAELL---AAYDGPIPLGQYNNPNVIAGYKTIGLEILEQLGQG--DPDAVVVPVGGGGL 172

Query: 194 ALG 196
           A G
Sbjct: 173 AAG 175

Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295

>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed

 Score = 97.6 bits (244), Expect = 3e-22
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 47/235 (20%)

Query: 194 ALGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRI 249
            L RPTP+   + +   L   +KI+ K E ++ TG+HK N ++AQ   A + KK   KR+
Sbjct: 73  RLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQ---AYYNKKEGIKRL 129

Query: 250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYK----RQNINVKKIKLLGGTVY----- 300
             ETGAG  G + A +C L  LE  +++    Y+    R+++    ++  G  V      
Sbjct: 130 TTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSL----METYGAEVIPSPSD 185

Query: 301 LVQYGN--LKE----------AMNEAIKDWSNNILNSHYLIGTASG-PHPYPTIVRDFQS 347
           L + G   L E          A++EA++D +    ++ Y +G  S   H     V   Q+
Sbjct: 186 LTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRP-DTKYALG--SVLNH-----VLLHQT 237

Query: 348 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFI------NSNFKLVAIES 396
           +IG E  +QL         ++ CVGGGSN  G+ + F+        + + +A+E 
Sbjct: 238 VIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEP 292

Length = 427

>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed

 Score = 87.2 bits (217), Expect = 9e-19
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 41/207 (19%)

Query: 13  GRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIIC 68
            RPTP+   + +   L   +KI+ K E ++ TG+HK N ++AQ   A + KK   KR+  
Sbjct: 75  WRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQ---AYYNKKEGIKRLTT 131

Query: 69  ETGAGMHGVSTATSCCLLNLESIIYIGENDYK----RQNINVKKIKLLGGTVY-----LV 119
           ETGAG  G + A +C L  LE  +++    Y+    R+++    ++  G  V      L 
Sbjct: 132 ETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSL----METYGAEVIPSPSDLT 187

Query: 120 QYGN--LKE----------AMNEAIKDWSNNILNSHYLIGTASG-PHPYPTIVRDFQSII 166
           + G   L E          A++EA++D +    ++ Y +G  S   H     V   Q++I
Sbjct: 188 EAGRKILAEDPDHPGSLGIAISEAVEDAAKRP-DTKYALG--SVLNH-----VLLHQTVI 239

Query: 167 GYEIHQQLNFNFYNKKYILACVGGGSN 193
           G E  +QL         ++ CVGGGSN
Sbjct: 240 GLEAKKQLELAGEYPDVVIGCVGGGSN 266

Length = 427

>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism]

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 27/190 (14%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
            PTP+    ++S  L G++I+LKRE+L   G+ K+    N ++ SL  +  +   +I  +
Sbjct: 24  NPTPLQRSPSLSERL-GAEIYLKRENLQPVGSFKIRGAYNKLS-SLSEEEERAAGVIAAS 81

Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMN 312
            AG H    A +   L +++ I + E   K   I V   +  G  V  + +G N  +A  
Sbjct: 82  -AGNHAQGVAYAAKRLGIKATIVMPETTPK---IKVDATRGYGAEV--ILHGDNFDDAYA 135

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILAC 370
            A +      L     +       P+  P ++   Q  I  EI +QL         +   
Sbjct: 136 AAEELAEEEGL---TFV------PPFDDPDVIAG-QGTIALEILEQLPDLP---DAVFVP 182

Query: 371 VGGGSNALGI 380
           VGGG    GI
Sbjct: 183 VGGGGLISGI 192

Length = 347

>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism]

 Score = 78.4 bits (194), Expect = 5e-16
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 27/185 (14%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
            PTP+    ++S  L G++I+LKRE+L   G+ K+    N ++ SL  +  +   +I  +
Sbjct: 24  NPTPLQRSPSLSERL-GAEIYLKRENLQPVGSFKIRGAYNKLS-SLSEEEERAAGVIAAS 81

Query: 71  GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMN 129
            AG H    A +   L +++ I + E   K   I V   +  G  V  + +G N  +A  
Sbjct: 82  -AGNHAQGVAYAAKRLGIKATIVMPETTPK---IKVDATRGYGAEV--ILHGDNFDDAYA 135

Query: 130 EAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILAC 187
            A +      L     +       P+  P ++   Q  I  EI +QL         +   
Sbjct: 136 AAEELAEEEGL---TFV------PPFDDPDVIAG-QGTIALEILEQLPDLP---DAVFVP 182

Query: 188 VGGGS 192
           VGGG 
Sbjct: 183 VGGGG 187

Length = 347

>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 35/212 (16%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
           R TP+     +S +L G++++LK E+L  TG+ K+    N +    L++  + K ++  +
Sbjct: 16  RRTPLLTSPTLSELL-GAEVYLKCENLQKTGSFKIRGAYNKLLS--LSEEERAKGVVAAS 72

Query: 254 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYGN-LKEA 310
            AG H    A +  LL + + I + E     K         +  G  V  V YG    EA
Sbjct: 73  -AGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDA-----TRAYGAEV--VLYGEDFDEA 124

Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
             +A +      L     I      HP+  P ++   Q  IG EI +Q+     +   + 
Sbjct: 125 EAKARELAEEEGL---TFI------HPFDDPDVIAG-QGTIGLEILEQVP----DLDAVF 170

Query: 369 ACVGGGSNALGIFYTF--INSNFKLVAIESGG 398
             VGGG    GI      ++ N K++ +E  G
Sbjct: 171 VPVGGGGLIAGIATAVKALSPNTKVIGVEPEG 202

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304

>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

 Score = 59.0 bits (144), Expect = 1e-09
 Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 33/187 (17%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
           R TP+     +S +L G++++LK E+L  TG+ K+    N +    L++  + K ++  +
Sbjct: 16  RRTPLLTSPTLSELL-GAEVYLKCENLQKTGSFKIRGAYNKLLS--LSEEERAKGVVAAS 72

Query: 71  GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYGN-LKEA 127
            AG H    A +  LL + + I + E     K         +  G  V  V YG    EA
Sbjct: 73  -AGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDA-----TRAYGAEV--VLYGEDFDEA 124

Query: 128 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
             +A +      L     I      HP+  P ++   Q  IG EI +Q+     +   + 
Sbjct: 125 EAKARELAEEEGL---TFI------HPFDDPDVIAG-QGTIGLEILEQVP----DLDAVF 170

Query: 186 ACVGGGS 192
             VGGG 
Sbjct: 171 VPVGGGG 177

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304

>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 42/217 (19%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 255
           TP+     +   L G  +++K E LN TG+ K   M  ++++   AK L  K + C +  
Sbjct: 23  TPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSK---AKELGVKAVACAS-T 78

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN----LKEAM 311
           G    S A       ++ ++++     K     + +    G TV  V+ GN    L+   
Sbjct: 79  GNTSASLAAYAARAGIKCVVFLPAG--KALG-KLAQALAYGATVLAVE-GNFDDALRLVR 134

Query: 312 NEAIKDW--SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 369
             A ++W   +N LN + L G  +               I +EI +QL +      Y++ 
Sbjct: 135 ELAEENWIYLSNSLNPYRLEGQKT---------------IAFEIAEQLGWE--VPDYVVV 177

Query: 370 CVGGGSNALGIFYTF--------INSNFKLVAIESGG 398
            VG G N   I+  F        I+   ++V +++ G
Sbjct: 178 PVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEG 214

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324

>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 34/190 (17%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 72
           TP+     +   L G  +++K E LN TG+ K   M  ++++   AK L  K + C +  
Sbjct: 23  TPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSK---AKELGVKAVACAS-T 78

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN----LKEAM 128
           G    S A       ++ ++++     K     + +    G TV  V+ GN    L+   
Sbjct: 79  GNTSASLAAYAARAGIKCVVFLPAG--KALG-KLAQALAYGATVLAVE-GNFDDALRLVR 134

Query: 129 NEAIKDW--SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 186
             A ++W   +N LN + L G  +               I +EI +QL +      Y++ 
Sbjct: 135 ELAEENWIYLSNSLNPYRLEGQKT---------------IAFEIAEQLGWE--VPDYVVV 177

Query: 187 CVGGGSNALG 196
            VG G N   
Sbjct: 178 PVGNGGNITA 187

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324

>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 29/211 (13%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
             TP+   + +S    G+ I+LKREDL    ++K+    N + Q  L+     K ++C +
Sbjct: 15  PHTPLQLNERLSEKY-GANIYLKREDLQPVRSYKIRGAYNFLKQ--LSDAQLAKGVVCAS 71

Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGN-LKEAM 311
            AG H    A +C  L +   +++     K++   + ++K+ GG  + ++  G+   +  
Sbjct: 72  -AGNHAQGFAYACRHLGVHGTVFMPATTPKQK---IDRVKIFGGEFIEIILVGDTFDQCA 127

Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 369
             A +   +   +    I       P+  P I+   Q  +  EI  QL        Y++ 
Sbjct: 128 AAAREHVED---HGGTFI------PPFDDPRIIEG-QGTVAAEILDQLP---EKPDYVVV 174

Query: 370 CVGGG--SNALGIFYTFINSNFKLVAIESGG 398
            VGGG   + L  +    +   K++ +E  G
Sbjct: 175 PVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409

>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
             TP+   + +S    G+ I+LKREDL    ++K+    N + Q  L+     K ++C +
Sbjct: 15  PHTPLQLNERLSEKY-GANIYLKREDLQPVRSYKIRGAYNFLKQ--LSDAQLAKGVVCAS 71

Query: 71  GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGN-LKEAM 128
            AG H    A +C  L +   +++     K++   + ++K+ GG  + ++  G+   +  
Sbjct: 72  -AGNHAQGFAYACRHLGVHGTVFMPATTPKQK---IDRVKIFGGEFIEIILVGDTFDQCA 127

Query: 129 NEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 186
             A +   +   +    I       P+  P I+   Q  +  EI  QL        Y++ 
Sbjct: 128 AAAREHVED---HGGTFI------PPFDDPRIIEG-QGTVAAEILDQLP---EKPDYVVV 174

Query: 187 CVGGGSNALGRPTPIYYCKNISNIL 211
            VGGG    G  T +      + I+
Sbjct: 175 PVGGGGLISGLTTYLAGTSPKTKII 199

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409

>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 24/186 (12%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 255
           TP+     +S  L G++I +KREDL    + K+    N +AQ  L+   K + +I  + A
Sbjct: 18  TPLQKAAKLSERL-GNRILIKREDLQPVFSFKLRGAYNKMAQ--LSPEQKARGVIAAS-A 73

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEA 314
           G H    A S   L L+++I + E       I V  ++  GG V L  +G N  +A  +A
Sbjct: 74  GNHAQGVAFSAARLGLKALIVMPETTPD---IKVDAVRGFGGEVVL--HGANFDDAKAKA 128

Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
           I+      L       T   P   P ++   Q  +  EI +Q+         +   VGGG
Sbjct: 129 IELSQEKGL-------TFIHPFDDPLVIAG-QGTLALEILRQVANPLD---AVFVPVGGG 177

Query: 375 SNALGI 380
             A G+
Sbjct: 178 GLAAGV 183

This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499

>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 14/187 (7%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMH 258
           TP+   + +   L   KI+LK E  N TG  K   + A    A  L    I   T  G +
Sbjct: 16  TPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITVGT-CGNY 74

Query: 259 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDW 318
           G S A    L  L+++I+I  + Y   N  VK+++  G  +  V  G  +EA+ E  + +
Sbjct: 75  GASIAYFARLYGLKAVIFIPRS-YS--NSRVKEMEKYGAEIIYVD-GKYEEAV-ERSRKF 129

Query: 319 SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNAL 378
           +    N  Y    A+       +  +  S I YEI++ L         +   VG G+   
Sbjct: 130 AKE--NGIY---DANPGSVNSVVDIEAYSAIAYEIYEALGDVPD---AVAVPVGNGTTLA 181

Query: 379 GIFYTFI 385
           GI++ F 
Sbjct: 182 GIYHGFR 188

Length = 319

>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 24/185 (12%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 72
           TP+     +S  L G++I +KREDL    + K+    N +AQ  L+   K + +I  + A
Sbjct: 18  TPLQKAAKLSERL-GNRILIKREDLQPVFSFKLRGAYNKMAQ--LSPEQKARGVIAAS-A 73

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEA 131
           G H    A S   L L+++I + E       I V  ++  GG V L  +G N  +A  +A
Sbjct: 74  GNHAQGVAFSAARLGLKALIVMPETTPD---IKVDAVRGFGGEVVL--HGANFDDAKAKA 128

Query: 132 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
           I+      L       T   P   P ++   Q  +  EI +Q+         +   VGGG
Sbjct: 129 IELSQEKGL-------TFIHPFDDPLVIAG-QGTLALEILRQVANPLD---AVFVPVGGG 177

Query: 192 SNALG 196
             A G
Sbjct: 178 GLAAG 182

This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499

>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional

 Score = 40.5 bits (96), Expect = 0.001
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 43/191 (22%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
           R TP+ Y + +S +  G++++LK E+L  TG+ K+    N IA   L++  + + ++  +
Sbjct: 21  RRTPLEYSRTLSELT-GAEVYLKCENLQRTGSFKIRGAYNKIAS--LSEEERARGVVAAS 77

Query: 71  GAGMH--GVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYLVQYGN-LK 125
            AG H  GV+ A S  LL +++ I + E     K     VK  +  G  V L  +G+   
Sbjct: 78  -AGNHAQGVAYAAS--LLGIKATIVMPETAPLSK-----VKATRSYGAEVVL--HGDVYD 127

Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 180
           EA+ +A +            +   +G    HP+  P ++   Q  IG EI + L     +
Sbjct: 128 EALAKAQE------------LAEETGATFVHPFDDPDVIAG-QGTIGLEILEDLP----D 170

Query: 181 KKYILACVGGG 191
              ++  +GGG
Sbjct: 171 VDTVVVPIGGG 181

Length = 404

>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional

 Score = 40.5 bits (96), Expect = 0.001
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 43/191 (22%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
           R TP+ Y + +S +  G++++LK E+L  TG+ K+    N IA   L++  + + ++  +
Sbjct: 21  RRTPLEYSRTLSELT-GAEVYLKCENLQRTGSFKIRGAYNKIAS--LSEEERARGVVAAS 77

Query: 254 GAGMH--GVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYLVQYGN-LK 308
            AG H  GV+ A S  LL +++ I + E     K     VK  +  G  V L  +G+   
Sbjct: 78  -AGNHAQGVAYAAS--LLGIKATIVMPETAPLSK-----VKATRSYGAEVVL--HGDVYD 127

Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 363
           EA+ +A +            +   +G    HP+  P ++   Q  IG EI + L     +
Sbjct: 128 EALAKAQE------------LAEETGATFVHPFDDPDVIAG-QGTIGLEILEDLP----D 170

Query: 364 KKYILACVGGG 374
              ++  +GGG
Sbjct: 171 VDTVVVPIGGG 181

Length = 404

>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 52/230 (22%), Positives = 80/230 (34%), Gaps = 51/230 (22%)

Query: 16  TPIYYCKNISNILK--GSKIFLKREDLNFTGAHK-MNNSIAQSLLAKFLKKKRIIC---- 68
           TP+Y    ++  L      +++K    N TG+ K    ++  SL  +    K I+C    
Sbjct: 77  TPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELG-AKTILCASSG 135

Query: 69  ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKL-----LGGTVYLVQYGN 123
            TGA     +         L+  +   +         V   KL     LG  V  V  GN
Sbjct: 136 NTGASAAAYAARA-----GLKVFVLYPKG-------KVSPGKLAQMLTLGAHVIAVD-GN 182

Query: 124 LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY 183
             +A  E +K+      N   L+   +  +PY     + Q    +EI +QL +      +
Sbjct: 183 FDDA-QELVKE----AANREGLLSAVNSINPY---RLEGQKTYAFEIAEQLGWK--APDH 232

Query: 184 ILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNN 233
           ++  VG G N L              I KG K  L         A  MN 
Sbjct: 233 VVVPVGNGGNLLA-------------IYKGFKEGLPIG--KIDKAPNMNG 267

Length = 411

>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 24/202 (11%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGA 255
           +P+   K +S  L G K+ LKREDL    + K+    A +++AK  K    K +IC + A
Sbjct: 110 SPLQLAKKLSERL-GVKVLLKREDLQPVFSFKLRG--AYNMMAKLPKEQLDKGVICSS-A 165

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 315
           G H    A S   L  +++I +         I  + ++ LG TV LV   +  EA   A 
Sbjct: 166 GNHAQGVALSAQRLGCDAVIAM---PVTTPEIKWQSVERLGATVVLVG-DSYDEAQAYAK 221

Query: 316 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 375
           +              T   P  +P ++   Q  +G EI +Q     +    I   VGGG 
Sbjct: 222 QRALEEGR-------TFIPPFDHPDVIAG-QGTVGMEIVRQHQGPLHA---IFVPVGGGG 270

Query: 376 NALGI--FYTFINSNFKLVAIE 395
              GI  +   +    K++ +E
Sbjct: 271 LIAGIAAYVKRVRPEVKIIGVE 292

Length = 591

>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 43/199 (21%)

Query: 198 PTPIYYCKNISNILKGSKIFLKREDLN------FTGAHKMNNSIAQSLLAKFLKKKRIIC 251
            TP+     +S    G+ ++LKREDL         GA+   N+I+Q  L+       ++C
Sbjct: 25  ETPLQRNDYLSEKY-GANVYLKREDLQPVRSYKLRGAY---NAISQ--LSDEELAAGVVC 78

Query: 252 ETGAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGN-- 306
            + AG H  GV  A +C  L +  +I++      +Q I+  +++  GG  V +V  G+  
Sbjct: 79  AS-AGNHAQGV--AYACRHLGIPGVIFMPVTT-PQQKID--QVRFFGGEFVEIVLVGDTF 132

Query: 307 ---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNF 361
                 A   A +            I       P+  P ++   Q  +  EI +QL    
Sbjct: 133 DDSAAAAQEYAEE-------TGATFI------PPFDDPDVIAG-QGTVAVEILEQLE-KE 177

Query: 362 YNKKYILACVGGGSNALGI 380
            +  Y+   VGGG    G+
Sbjct: 178 GSPDYVFVPVGGGGLISGV 196

Length = 420

>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 43/193 (22%)

Query: 15  PTPIYYCKNISNILKGSKIFLKREDLN------FTGAHKMNNSIAQSLLAKFLKKKRIIC 68
            TP+     +S    G+ ++LKREDL         GA+   N+I+Q  L+       ++C
Sbjct: 25  ETPLQRNDYLSEKY-GANVYLKREDLQPVRSYKLRGAY---NAISQ--LSDEELAAGVVC 78

Query: 69  ETGAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGN-- 123
            + AG H  GV  A +C  L +  +I++      +Q I+  +++  GG  V +V  G+  
Sbjct: 79  AS-AGNHAQGV--AYACRHLGIPGVIFMPVTT-PQQKID--QVRFFGGEFVEIVLVGDTF 132

Query: 124 ---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNF 178
                 A   A +            I       P+  P ++   Q  +  EI +QL    
Sbjct: 133 DDSAAAAQEYAEE-------TGATFI------PPFDDPDVIAG-QGTVAVEILEQLE-KE 177

Query: 179 YNKKYILACVGGG 191
            +  Y+   VGGG
Sbjct: 178 GSPDYVFVPVGGG 190

Length = 420

>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed

 Score = 39.7 bits (94), Expect = 0.002
 Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 42/195 (21%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLN--FT----GAHKMNNSIAQSLLAKFLKKKRIICE 252
           TP+     +S  L G+++ LKREDL   F+    GA+   N +AQ  L +    + +I  
Sbjct: 21  TPLEKAPKLSARL-GNQVLLKREDLQPVFSFKLRGAY---NKMAQ--LTEEQLARGVITA 74

Query: 253 TGAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKE 309
           + AG H  GV  A S   L ++++I +         I V  ++  GG V L  +G +  E
Sbjct: 75  S-AGNHAQGV--ALSAARLGIKAVIVMPVTTPD---IKVDAVRAFGGEVVL--HGDSFDE 126

Query: 310 AMNEAIKDWSNNILNSHYL--IGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 365
           A   AI+     +     L  I      HP+  P ++   Q  I  EI QQ         
Sbjct: 127 AYAHAIE-----LAEEEGLTFI------HPFDDPDVIAG-QGTIAMEILQQHPHPLD--- 171

Query: 366 YILACVGGGSNALGI 380
            +   VGGG    G+
Sbjct: 172 AVFVPVGGGGLIAGV 186

Length = 504

>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 41/188 (21%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHK----MNNSIAQSLLAKFLKKKRIICETG 71
           TPI + ++++ +L G +IF K E L  TGA K    +N+ +   L  +     +I+  + 
Sbjct: 24  TPIVHSESLNEML-GHEIFFKVESLQKTGAFKVRGVLNHLLE--LKEQGKLPDKIVAYS- 79

Query: 72  AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY--LVQYGNLKEAMN 129
            G HG + A +  L  +++ IY+          N  K+K      Y   V   N ++   
Sbjct: 80  TGNHGQAVAYASKLFGIKTRIYLPL--------NTSKVKQQAALYYGGEVILTNTRQEAE 131

Query: 130 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG------YEIHQQLNFNFYNKKY 183
           E  K+         Y I      HP      D  S I       YE  QQL F   +   
Sbjct: 132 EKAKEDEE---QGFYYI------HPS-----DSDSTIAGAGTLCYEALQQLGF---SPDA 174

Query: 184 ILACVGGG 191
           I A  GGG
Sbjct: 175 IFASCGGG 182

Length = 338

>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 41/188 (21%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK----MNNSIAQSLLAKFLKKKRIICETG 254
           TPI + ++++ +L G +IF K E L  TGA K    +N+ +   L  +     +I+  + 
Sbjct: 24  TPIVHSESLNEML-GHEIFFKVESLQKTGAFKVRGVLNHLLE--LKEQGKLPDKIVAYS- 79

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY--LVQYGNLKEAMN 312
            G HG + A +  L  +++ IY+          N  K+K      Y   V   N ++   
Sbjct: 80  TGNHGQAVAYASKLFGIKTRIYLPL--------NTSKVKQQAALYYGGEVILTNTRQEAE 131

Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG------YEIHQQLNFNFYNKKY 366
           E  K+         Y I      HP      D  S I       YE  QQL F   +   
Sbjct: 132 EKAKEDEE---QGFYYI------HPS-----DSDSTIAGAGTLCYEALQQLGF---SPDA 174

Query: 367 ILACVGGG 374
           I A  GGG
Sbjct: 175 IFASCGGG 182

Length = 338

>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 39/232 (16%)

Query: 199 TPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIA--QSLLAKFLKKKRIICETGA 255
           TPI Y   +S  L G  +I+ KR+D N +G     N I   + LL   L K      T  
Sbjct: 1   TPIQYLPRLSEHLGGKVEIYAKRDDCN-SGLAFGGNKIRKLEYLLPDALAKGADTLVTVG 59

Query: 256 GMHG----VSTATSC-----CLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG- 305
           G+         A +      C+L  E+ +   +  Y R   N+   +++G  V LV  G 
Sbjct: 60  GIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDR-VGNILLSRIMGADVRLVSAGF 118

Query: 306 --NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG--------YEIHQ 355
              ++++  EA ++              A G  PY       +  +G         EI Q
Sbjct: 119 DIGIRKSFEEAAEEV------------EAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQ 166

Query: 356 QLNFNFYNKKYILACVGGGSNALGIF--YTFINSNFKLVAIESGGISKKRTA 405
           Q     +    I+ C   GS   G+      +    +++ I++    +K  A
Sbjct: 167 QEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKA 218

Length = 307

>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGA 72
           +P+   K +S  L G K+ LKREDL    + K+    A +++AK  K    K +IC + A
Sbjct: 110 SPLQLAKKLSERL-GVKVLLKREDLQPVFSFKLRG--AYNMMAKLPKEQLDKGVICSS-A 165

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119
           G H    A S   L  +++I +         I  + ++ LG TV LV
Sbjct: 166 GNHAQGVALSAQRLGCDAVIAM---PVTTPEIKWQSVERLGATVVLV 209

Length = 591

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	410
PRK04346	397	tryptophan synthase subunit beta; Validated	100.0
PRK13028	402	tryptophan synthase subunit beta; Provisional	100.0
PLN02618	410	tryptophan synthase, beta chain	100.0
PRK04346	397	tryptophan synthase subunit beta; Validated	100.0
COG0133	396	TrpB Tryptophan synthase beta chain [Amino acid tr	100.0
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	100.0
PLN02618	410	tryptophan synthase, beta chain	100.0
PRK13028	402	tryptophan synthase subunit beta; Provisional	100.0
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	100.0
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	100.0
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	100.0
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	100.0
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	100.0
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	100.0
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	100.0
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	100.0
PRK11761	296	cysM cysteine synthase B; Provisional	100.0
PRK08526	403	threonine dehydratase; Provisional	100.0
PLN03013	429	cysteine synthase	100.0
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	100.0
PRK12483	521	threonine dehydratase; Reviewed	100.0
KOG1250|consensus	457		100.0
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	100.0
PLN02565	322	cysteine synthase	100.0
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	100.0
COG0133	396	TrpB Tryptophan synthase beta chain [Amino acid tr	100.0
PRK07476	322	eutB threonine dehydratase; Provisional	100.0
PLN02970	328	serine racemase	100.0
PRK08198	404	threonine dehydratase; Provisional	100.0
PRK06382	406	threonine dehydratase; Provisional	100.0
PLN02550	591	threonine dehydratase	100.0
PRK06110	322	hypothetical protein; Provisional	100.0
PRK08638	333	threonine dehydratase; Validated	100.0
PRK11761	296	cysM cysteine synthase B; Provisional	100.0
PRK08526	403	threonine dehydratase; Provisional	100.0
TIGR01136	299	cysKM cysteine synthases. This model discriminates	100.0
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	100.0
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	100.0
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	100.0
TIGR02079	409	THD1 threonine dehydratase. This model represents	100.0
PLN02565	322	cysteine synthase	100.0
PRK08639	420	threonine dehydratase; Validated	100.0
PRK08813	349	threonine dehydratase; Provisional	100.0
PLN02550	591	threonine dehydratase	100.0
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	100.0
PRK07476	322	eutB threonine dehydratase; Provisional	100.0
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	100.0
PRK08638	333	threonine dehydratase; Validated	100.0
PRK08197	394	threonine synthase; Validated	100.0
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	100.0
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	100.0
PLN02970	328	serine racemase	100.0
PRK07048	321	serine/threonine dehydratase; Validated	100.0
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	100.0
PLN00011	323	cysteine synthase	100.0
PLN03013	429	cysteine synthase	100.0
PRK07591	421	threonine synthase; Validated	100.0
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	100.0
PRK12483	521	threonine dehydratase; Reviewed	100.0
PRK08198	404	threonine dehydratase; Provisional	100.0
PRK06352	351	threonine synthase; Validated	100.0
PRK06381	319	threonine synthase; Validated	100.0
PRK10717	330	cysteine synthase A; Provisional	100.0
PRK09224	504	threonine dehydratase; Reviewed	100.0
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	100.0
PRK06381	319	threonine synthase; Validated	100.0
PRK06382	406	threonine dehydratase; Provisional	100.0
PRK06815	317	hypothetical protein; Provisional	100.0
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	100.0
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	100.0
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	100.0
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	100.0
PLN02356	423	phosphateglycerate kinase	100.0
PRK07334	403	threonine dehydratase; Provisional	100.0
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	100.0
PRK06110	322	hypothetical protein; Provisional	100.0
PLN02356	423	phosphateglycerate kinase	100.0
PRK07591	421	threonine synthase; Validated	100.0
PRK08246	310	threonine dehydratase; Provisional	100.0
PRK07048	321	serine/threonine dehydratase; Validated	100.0
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	100.0
PRK08197	394	threonine synthase; Validated	100.0
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	100.0
PRK08813	349	threonine dehydratase; Provisional	100.0
PRK09224	504	threonine dehydratase; Reviewed	100.0
PRK06608	338	threonine dehydratase; Provisional	100.0
PRK08639	420	threonine dehydratase; Validated	100.0
PRK08246	310	threonine dehydratase; Provisional	100.0
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	100.0
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	100.0
PRK10717	330	cysteine synthase A; Provisional	100.0
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	100.0
PRK12391	427	tryptophan synthase subunit beta; Reviewed	100.0
PRK12391	427	tryptophan synthase subunit beta; Reviewed	100.0
PRK07409	353	threonine synthase; Validated	100.0
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	100.0
PRK02991	441	D-serine dehydratase; Provisional	100.0
PLN02569	484	threonine synthase	100.0
TIGR01136	299	cysKM cysteine synthases. This model discriminates	100.0
KOG1250|consensus	457		100.0
PRK07334	403	threonine dehydratase; Provisional	100.0
PRK06260	397	threonine synthase; Validated	100.0
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	100.0
PRK06815	317	hypothetical protein; Provisional	100.0
TIGR02079	409	THD1 threonine dehydratase. This model represents	100.0
PRK06260	397	threonine synthase; Validated	100.0
PRK06721	352	threonine synthase; Reviewed	100.0
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	100.0
PRK06450	338	threonine synthase; Validated	100.0
PLN00011	323	cysteine synthase	100.0
PRK06608	338	threonine dehydratase; Provisional	100.0
PRK06352	351	threonine synthase; Validated	100.0
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	100.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	100.0
PRK02991	441	D-serine dehydratase; Provisional	100.0
KOG1252|consensus	362		100.0
PRK05638	442	threonine synthase; Validated	100.0
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	100.0
PLN02569	484	threonine synthase	100.0
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	100.0
PRK08329	347	threonine synthase; Validated	100.0
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	100.0
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	100.0
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	100.0
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	100.0
PRK07409	353	threonine synthase; Validated	100.0
PRK05638	442	threonine synthase; Validated	100.0
PRK06450	338	threonine synthase; Validated	100.0
PRK06721	352	threonine synthase; Reviewed	100.0
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	100.0
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	100.0
PRK08329	347	threonine synthase; Validated	100.0
KOG1251|consensus	323		100.0
KOG1395|consensus	477		100.0
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	100.0
KOG1251|consensus	323		100.0
KOG1252|consensus	362		100.0
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	100.0
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	100.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	100.0
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	100.0
KOG1395|consensus	477		100.0
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	100.0
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
PRK03910	331	D-cysteine desulfhydrase; Validated	100.0
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	100.0
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	99.98
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	99.97
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	99.97
KOG1481|consensus	391		99.97
TIGR03844	398	cysteate_syn cysteate synthase. Members of this fa	99.97
TIGR03844	398	cysteate_syn cysteate synthase. Members of this fa	99.97
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	99.97
PRK03910	331	D-cysteine desulfhydrase; Validated	99.97
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	99.97
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	99.97
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	99.96
KOG1481|consensus	391		99.96
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	99.96
COG1350	432	Predicted alternative tryptophan synthase beta-sub	99.96
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	99.96
COG0498	411	ThrC Threonine synthase [Amino acid transport and	99.95
COG0498	411	ThrC Threonine synthase [Amino acid transport and	99.94
COG1350	432	Predicted alternative tryptophan synthase beta-sub	99.93
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	99.91
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	99.83
PRK09225	462	threonine synthase; Validated	99.8
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	99.78
PRK09225	462	threonine synthase; Validated	99.73
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	99.7
COG3048	443	DsdA D-serine dehydratase [Amino acid transport an	99.53
COG3048	443	DsdA D-serine dehydratase [Amino acid transport an	99.36
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.06
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.66
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	89.87
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	86.19
cd06533	171	Glyco_transf_WecG_TagA The glycosyltransferase Wec	82.93
PRK12831	464	putative oxidoreductase; Provisional	82.38
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	81.75

>PRK04346 tryptophan synthase subunit beta; Validated

Probab=100.00  E-value=6.7e-43  Score=345.89  Aligned_cols=210  Identities=54%  Similarity=0.915  Sum_probs=189.0

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|.+|||+.+++|++.+++.+||+|+|++|||||||+|+++.+++.+++.|++++|+|+|+||||+|+|++|+++|++|+
T Consensus        55 ~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~  134 (397)
T PRK04346         55 VGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECV  134 (397)
T ss_pred             cCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEE
Confidence            57899999999999888779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      ||||+.+.++++.|+.+|+.+||+|+.|+.+.  ++++++++.+.+.++..+.+|++++..|||||+.++.+||+|+|.|
T Consensus       135 I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~E  214 (397)
T PRK04346        135 IYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEE  214 (397)
T ss_pred             EEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHH
Confidence            99998766777789999999999999998653  8888888888765543457899999999999998889999999999


Q ss_pred             HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCc
Q psy11239        353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRT  404 (410)
Q Consensus       353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~  404 (410)
                      |++|+. ..+..||+||+|||+||+++|++.+|++. ++|||||||.|+.+.++
T Consensus       215 i~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~  268 (397)
T PRK04346        215 AKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAGKGLETG  268 (397)
T ss_pred             HHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhhCCCCeEEEEecCCCccccc
Confidence            999997 34668999999999999999999988754 89999999999866544

>PRK13028 tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=4.8e-41  Score=333.19  Aligned_cols=204  Identities=52%  Similarity=0.861  Sum_probs=184.1

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|.+|||+++++|++.+++.+||+|+|++|||||||+|.++.+++.+++.|++++|+|+|+||||+|+|++|+++|++|+
T Consensus        59 ~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~  138 (402)
T PRK13028         59 VGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECE  138 (402)
T ss_pred             CCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEE
Confidence            57899999999999888678999999999999999999999999999999998899889999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      ||||+.+++++..|+++|+++||+|+.++.+  .++++++++.+.+.++.++.+|++++..|||||+.++..|++|+|.|
T Consensus       139 I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~E  218 (402)
T PRK13028        139 IYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEE  218 (402)
T ss_pred             EEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHH
Confidence            9999877777778999999999999999864  39999999877655443357899999999999988888999999999


Q ss_pred             HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhc-CCCeEEEEccCC
Q psy11239        353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFIN-SNFKLVAIESGG  398 (410)
Q Consensus       353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~-~~~~vigVe~~g  398 (410)
                      |.+|+. ..+..||+||+|||+||+++|++.+|++ +++|||||||.|
T Consensus       219 i~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~~~~v~iigVE~~G  266 (402)
T PRK13028        219 AREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLDDESVRLVGVEPAG  266 (402)
T ss_pred             HHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHhCCCceEEEEecCC
Confidence            999986 3456799999999999999999999985 489999999999

>PLN02618 tryptophan synthase, beta chain

Probab=100.00  E-value=8.1e-41  Score=331.58  Aligned_cols=210  Identities=50%  Similarity=0.887  Sum_probs=184.7

Q ss_pred             eecccccccccccccccc-----CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHc
Q psy11239        195 LGRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLL  269 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~-----~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~  269 (410)
                      .|.+|||+.+++|++.++     +.+||+|+|++|||||||+|.++.+++.+++.+++++|+++|+||||+|+|++|+++
T Consensus        63 vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~  142 (410)
T PLN02618         63 VGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARF  142 (410)
T ss_pred             cCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc
Confidence            468999999999998774     589999999999999999999999999999999999999889999999999999999


Q ss_pred             CCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhh
Q psy11239        270 NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQS  347 (410)
Q Consensus       270 G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  347 (410)
                      |++|+||||+.+.+++..|+.+|+.+||+|+.++.++  +++++.++.+.+.++.++.+|++++..|||||+.++..+++
T Consensus       143 Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~  222 (410)
T PLN02618        143 GLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHS  222 (410)
T ss_pred             CCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhH
Confidence            9999999998666667789999999999999997643  88998777765554434578999999999999877889999


Q ss_pred             hHHHHHHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCc
Q psy11239        348 IIGYEIHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRT  404 (410)
Q Consensus       348 t~g~Ei~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~  404 (410)
                      |+|.||.+|+. ..+..||+||+|||+||+++|++.+|++. ++|||||||+|+.+..+
T Consensus       223 tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~~~~v~ligVEa~G~~~~~~  281 (410)
T PLN02618        223 VIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSG  281 (410)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHhCCCceEEEEEeCCCccccc
Confidence            99999999984 44567999999999999999999999754 89999999999855433

>PRK04346 tryptophan synthase subunit beta; Validated

Probab=100.00  E-value=2.3e-41  Score=334.99  Aligned_cols=210  Identities=51%  Similarity=0.836  Sum_probs=183.2

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~   81 (410)
                      ++++++++.+.++||||+++++|++.+|+.+||+|+|++|||||||+|+++.+++.+++++++++|+++|+||||+|+|+
T Consensus        45 ~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~  124 (397)
T PRK04346         45 AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATAT  124 (397)
T ss_pred             HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHH
Confidence            56788899999999999999999999888999999999999999999999999999999998889998899999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV  159 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  159 (410)
                      +|+++|++|+||||+.+.+++..|..+|+.|||+|+.|+.+  ++++++.++.+.+..+..+.+|++++..++|||+..+
T Consensus       125 ~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v  204 (397)
T PRK04346        125 AAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMV  204 (397)
T ss_pred             HHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHH
Confidence            99999999999999965444457889999999999999865  5888888888876665556789999988999997656


Q ss_pred             cccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        160 RDFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       160 ~~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      .+||+|++.||.+|+.. .+..||+||+|||+||+++|+..+|.+       .+.++|+.
T Consensus       205 ~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-------~~~v~iig  257 (397)
T PRK04346        205 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-------DESVRLIG  257 (397)
T ss_pred             HHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-------CCCCeEEE
Confidence            78999999999999742 245799999999999999999888854       13567774

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-40  Score=304.93  Aligned_cols=212  Identities=52%  Similarity=0.903  Sum_probs=203.1

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      +|.+|||...++|+++. +.+||+||||+|+||++|+..++.++++|++.|++++|.|.+.|.||.|.|.+|+++|++|+
T Consensus        53 ~GRptpLy~a~~Lt~~~-gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~  131 (396)
T COG0133          53 AGRPTPLYFAERLTEHL-GAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECV  131 (396)
T ss_pred             CCCCChhHHHHHHHHhh-CceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceE
Confidence            68999999999999998 59999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      |||-..+.+||+.|+.+|+.+||+|+.|.+|+  ++|++++|++.|..+-...+|++++..+|||||.++...|+.+|.|
T Consensus       132 iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E  211 (396)
T COG0133         132 IYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEE  211 (396)
T ss_pred             EEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHH
Confidence            99998899999999999999999999999888  9999999999999988889999999999999999999999999999


Q ss_pred             HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCccCC
Q psy11239        353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRTASR  407 (410)
Q Consensus       353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~~~~  407 (410)
                      ..+|+. ..|..||+||.|||+|+++.|++..|.+. ++++||||+.|..+.+++++
T Consensus       212 ~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~Ha  268 (396)
T COG0133         212 AKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHA  268 (396)
T ss_pred             HHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCCCCceEEEeccCcCccCCCccc
Confidence            999987 45789999999999999999999988875 99999999999999988875

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=9.8e-39  Score=332.92  Aligned_cols=211  Identities=47%  Similarity=0.838  Sum_probs=183.5

Q ss_pred             eecccccccccccccc----cc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHc
Q psy11239        195 LGRPTPIYYCKNISNI----LK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLL  269 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~----~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~  269 (410)
                      .|.+|||+++++|++.    .+ +.+||+|+|++|||||||+|.++.+++.+++.|++++|+|+|+||||+|+|++|+++
T Consensus       323 iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~  402 (695)
T PRK13802        323 VGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAML  402 (695)
T ss_pred             CCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHc
Confidence            5789999999988643    44 479999999999999999999999999999999988888999999999999999999


Q ss_pred             CCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhh
Q psy11239        270 NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQS  347 (410)
Q Consensus       270 G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  347 (410)
                      |++|+||||+.+..++..|+.+|+.+||+|+.++.++  ++++++++.+.+.++..+.+|+++++.|+|||+.++.+|++
T Consensus       403 Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~  482 (695)
T PRK13802        403 GLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQK  482 (695)
T ss_pred             CCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHH
Confidence            9999999998655556789999999999999997544  78888777665554323467889999999999888889999


Q ss_pred             hHHHHHHHhhhh-cC-CCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCcc
Q psy11239        348 IIGYEIHQQLNF-NF-YNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRTA  405 (410)
Q Consensus       348 t~g~Ei~~q~~~-~~-~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~~  405 (410)
                      |+|.||++|+.+ .| ..||+||+|||+||+++|++.+|++. ++|||||||.++....|.
T Consensus       483 tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~~~~vkligVE~~g~g~~~g~  543 (695)
T PRK13802        483 IIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLDDERVNLYGYEAGGNGPESGK  543 (695)
T ss_pred             HHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHhCCCceEEEEEecCCCccccc
Confidence            999999999963 23 27999999999999999999999764 899999999998766553

>PLN02618 tryptophan synthase, beta chain

Probab=100.00  E-value=4.9e-40  Score=325.96  Aligned_cols=210  Identities=47%  Similarity=0.778  Sum_probs=180.2

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccC-----CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHG   76 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~-----~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g   76 (410)
                      ++++++++.+.+++|||+++++|++.+|     +.+||+|+|++|||||||+|+++.+++++++++++++|+++|+||||
T Consensus        53 ~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG  132 (410)
T PLN02618         53 EELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHG  132 (410)
T ss_pred             HHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHH
Confidence            5677888888989999999999999874     68999999999999999999999998889999988899987899999


Q ss_pred             HHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC--CCHHHHHHHHHHHHhhcccCCcccccccccCcc
Q psy11239         77 VSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY--GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHP  154 (410)
Q Consensus        77 ~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  154 (410)
                      +|+|++|+++|++|+||||+.+.+++..|..+|+.|||+|+.|+.  +++++++.++.+.+.++..+.+|++++..++||
T Consensus       133 ~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P  212 (410)
T PLN02618        133 VATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP  212 (410)
T ss_pred             HHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCC
Confidence            999999999999999999997554456789999999999999964  368898877776665554567899999999999


Q ss_pred             ccccccccchhHHHHHHHhh-hhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        155 YPTIVRDFQSIIGYEIHQQL-NFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       155 ~~~~~~~g~~ti~~EI~~q~-~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |+.++.++++|+|.||.+|. +..+..||+||+|||+||+++|+..+|..       .+.++|+.
T Consensus       213 ~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-------~~~v~lig  270 (410)
T PLN02618        213 YPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-------DEDVRLIG  270 (410)
T ss_pred             CHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-------CCCceEEE
Confidence            97667899999999998886 22234799999999999999999888853       13577774

>PRK13028 tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=5.5e-40  Score=325.61  Aligned_cols=210  Identities=48%  Similarity=0.732  Sum_probs=181.5

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~   81 (410)
                      ++++++++.+..+||||+++++|++.+|+.+||+|+|++|||||||+|+++.+++.+++++++.+|+++||||||+|+|+
T Consensus        49 ~~~~~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~  128 (402)
T PRK13028         49 AELRYLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATAT  128 (402)
T ss_pred             HHHHHHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHH
Confidence            56788899999999999999999999878899999999999999999999999999999998888988889999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV  159 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  159 (410)
                      +|+++|++|+||||+.+++++..|..+|+.|||+|+.|+.+  +++++++++.+.+.++..+.+|++++..++|||..++
T Consensus       129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v  208 (402)
T PRK13028        129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV  208 (402)
T ss_pred             HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence            99999999999999976655457899999999999999853  5899999887766555456788888888899996555


Q ss_pred             cccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        160 RDFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       160 ~~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      .++|+|++.||.+|+.. .+..||+||+|||+||+++|+..+|.+.       +.++|+.
T Consensus       209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~~-------~~v~iig  261 (402)
T PRK13028        209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLDD-------ESVRLVG  261 (402)
T ss_pred             HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHhC-------CCceEEE
Confidence            68999999999999632 2346999999999999999999988641       2566764

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-39  Score=309.62  Aligned_cols=187  Identities=26%  Similarity=0.340  Sum_probs=166.6

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-H-cCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-F-LKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      ..|||..++.|++.. +.+||+|+|++|++||||.|++++.+.... + +...++| ++|+||||+++|++|+++|++++
T Consensus        24 ~~TPL~~s~~Ls~~~-g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gVi-aaSaGNHaQGvA~aa~~lGi~a~  101 (347)
T COG1171          24 NPTPLQRSPSLSERL-GAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVI-AASAGNHAQGVAYAAKRLGIKAT  101 (347)
T ss_pred             cCCCcccchhhHHhh-CceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceE-EecCCcHHHHHHHHHHHhCCCEE
Confidence            589999999999986 899999999999999999999999987654 3 3445555 49999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  353 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei  353 (410)
                      ||||..++.   .|++.+|.|||||+.+. .+|+++...+.++++++  +..|+       |||++. +++||+|++.||
T Consensus       102 IvMP~~tp~---~Kv~a~r~~GaeVil~g-~~~dda~~~a~~~a~~~--G~~~i-------~pfD~p~viAGQGTi~lEi  168 (347)
T COG1171         102 IVMPETTPK---IKVDATRGYGAEVILHG-DNFDDAYAAAEELAEEE--GLTFV-------PPFDDPDVIAGQGTIALEI  168 (347)
T ss_pred             EEecCCCcH---HHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHHc--CCEEe-------CCCCCcceeecccHHHHHH
Confidence            999986654   88999999999999973 33999999999999988  67888       999777 999999999999


Q ss_pred             HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCc
Q psy11239        354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISK  401 (410)
Q Consensus       354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~  401 (410)
                      ++|++   ..||+||+|+|+||+++|++.+++..  ++|||||||++++.
T Consensus       169 leq~~---~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~  215 (347)
T COG1171         169 LEQLP---DLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPS  215 (347)
T ss_pred             HHhcc---ccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChH
Confidence            99996   33799999999999999999999865  89999999999874

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=100.00  E-value=1.3e-38  Score=317.00  Aligned_cols=207  Identities=52%  Similarity=0.913  Sum_probs=175.7

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|.+|||+++++|++..++.+||+|+|++|||||||+|.+..++..+++.|.+++|+++|+||||+++|++|+++|++|+
T Consensus        47 ~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~  126 (385)
T TIGR00263        47 AGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCE  126 (385)
T ss_pred             CCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEE
Confidence            45799999999998887558999999999999999999999999999888888888889999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      ||||+.+.++++.|+++|+.+||+|+.++.+  .+++++.++.+.+.++.++.+|+.+++.|++||++++..|++|+|.|
T Consensus       127 Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~E  206 (385)
T TIGR00263       127 VYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEE  206 (385)
T ss_pred             EEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHH
Confidence            9999754454457889999999999999743  27777666665543332346788788888899987788999999999


Q ss_pred             HHHhhhhc-CCCCCEEEEccCchhHHHHHHHHHhc-CCCeEEEEccCCCCc
Q psy11239        353 IHQQLNFN-FYNKKYILACVGGGSNALGIFYTFIN-SNFKLVAIESGGISK  401 (410)
Q Consensus       353 i~~q~~~~-~~~~d~iv~~vGtGg~~~Gi~~~~~~-~~~~vigVe~~g~~~  401 (410)
                      |++|+.+. +..||+||+|+|+||+++|++.++.. +++|||||||+++..
T Consensus       207 i~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~~~~~~iigVe~~gs~~  257 (385)
T TIGR00263       207 AKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFIDDPSVQLIGVEAGGLGI  257 (385)
T ss_pred             HHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhhCCCCeEEEEEeCCCcc
Confidence            99998632 34699999999999999999987754 499999999999743

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-39  Score=301.14  Aligned_cols=245  Identities=20%  Similarity=0.168  Sum_probs=187.6

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc---CCceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~---~~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ...+|||++++++.... +++||+|+|++||+||.|||.++.++..+++.+   ++.+|+|+||||+|+++|+.|+.+|+
T Consensus         8 ~iG~TPlvrL~~~~~~~-~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy   86 (300)
T COG0031           8 LIGNTPLVRLNRLSPGT-GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGY   86 (300)
T ss_pred             HhCCCCcEeecccCCCC-CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC
Confidence            45799999999998774 789999999999999999998887777777655   56799999999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeC--CCHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY--GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS  164 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~  164 (410)
                      |+++|||+..+   ++|+++|++|||+|+.++.  +.+..+.+++.+++++.+ +..+      +.+||+||.  .+|+.
T Consensus        87 ~~iivmP~~~S---~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p-~~~~------~~~Qf~NpaN~~aH~~  156 (300)
T COG0031          87 RLIIVMPETMS---QERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIP-GYAV------WLNQFENPANPEAHYE  156 (300)
T ss_pred             cEEEEeCCCCC---HHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCC-CceE------chhhcCCCccHHHHHh
Confidence            99999999888   5999999999999999985  338889999999988763 2222      355666663  58999


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCC-----chhhHH-------
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFT-----GAHKMN-------  232 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt-----gS~K~R-------  232 (410)
                      |++.||++|.+  + .+|+||+++|||||++|+      ...|++..|.++++.-.-...+.     |++|++       
T Consensus       157 tT~~EI~~~~~--g-~~d~fVagvGTGGTitGv------ar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~i  227 (300)
T COG0031         157 TTGPEIWQQTD--G-KVDAFVAGVGTGGTITGV------ARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFV  227 (300)
T ss_pred             hhHHHHHHHhC--C-CCCEEEEeCCcchhHHHH------HHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcC
Confidence            99999999954  3 499999999999999999      66777777778887654332211     244443       


Q ss_pred             ------------------HHHHHHH-HHHHcCCCceEEecCchHHHHHHHHHHHHcC--CcEEEEEcC
Q psy11239        233 ------------------NSIAQSL-LAKFLKKKRIICETGAGMHGVSTATSCCLLN--LESIIYIGE  279 (410)
Q Consensus       233 ------------------~a~~~~~-~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G--~~~~vv~p~  279 (410)
                                        .++.+.. ++++   .++++..|||-.-.+.-..|++++  -..+++.|+
T Consensus       228 p~~~~~~~iD~v~~V~d~~A~~~~r~La~~---eGilvG~SsGA~~~aa~~~a~~~~~g~~IVti~pD  292 (300)
T COG0031         228 PENLDLDLIDEVIRVSDEEAIATARRLARE---EGLLVGISSGAALAAALKLAKELPAGKTIVTILPD  292 (300)
T ss_pred             CcccccccCceEEEECHHHHHHHHHHHHHH---hCeeecccHHHHHHHHHHHHHhcCCCCeEEEEECC
Confidence                              2222222 2222   456677888855555556677774  455556664

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=2.5e-38  Score=330.65  Aligned_cols=206  Identities=54%  Similarity=0.934  Sum_probs=182.9

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|.+|||+++++|++.. +.+||+|+|++|||||||+|.++.+++.+++.+.+++|+++|+||||+|+|++|+++|++|+
T Consensus       268 ~grpTPL~~~~~Ls~~~-G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~  346 (610)
T PRK13803        268 AGRPTPLTEAKRLSDIY-GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCT  346 (610)
T ss_pred             CCCCCcceeHHHHHHhh-CCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEE
Confidence            57899999999998877 68999999999999999999999999999999998899889999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      ||||+.+.+++..|+.+|+.+||+|+.++.+.  ++++++++.+.+..+.++.+|++++..|+|||+.++..|++|+|.|
T Consensus       347 I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~E  426 (610)
T PRK13803        347 IFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEE  426 (610)
T ss_pred             EEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHH
Confidence            99998766666789999999999999997543  8888888777663332357888888888999988888899999999


Q ss_pred             HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCc
Q psy11239        353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISK  401 (410)
Q Consensus       353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~  401 (410)
                      |++|+. ..+..||+||+|+||||+++|++.+|++. ++|||||||.++.+
T Consensus       427 i~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~~~~v~iigVE~~g~~~  477 (610)
T PRK13803        427 AKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLDDPSVKLIGVEAGGKGV  477 (610)
T ss_pred             HHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhhCCCceEEEEecCCCCc
Confidence            999996 34567999999999999999999999754 89999999999754

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-38  Score=303.56  Aligned_cols=252  Identities=22%  Similarity=0.245  Sum_probs=189.0

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-H-hcCCceEEEeCccHHHHHHHHHHHHcCCc
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-F-LKKKRIICETGAGMHGVSTATSCCLLNLE   89 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~-~~~~~~v~~~ssGN~g~a~A~~a~~~G~~   89 (410)
                      ...+|||++++.|++.+ +.+||+|+|++||+||||.|++...+.... + +.+.++|+ +|+||||+++|++|+++|+|
T Consensus        22 ~~~~TPL~~s~~Ls~~~-g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gVia-aSaGNHaQGvA~aa~~lGi~   99 (347)
T COG1171          22 VVNPTPLQRSPSLSERL-GAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIA-ASAGNHAQGVAYAAKRLGIK   99 (347)
T ss_pred             cccCCCcccchhhHHhh-CceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceEE-ecCCcHHHHHHHHHHHhCCC
Confidence            66799999999999996 899999999999999999998865544322 3 34555666 59999999999999999999


Q ss_pred             EEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHH
Q psy11239         90 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGY  168 (410)
Q Consensus        90 ~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~  168 (410)
                      ++||||..+|   ..|.+.+|.|||||+++. .+|+++.+.+.++++++         +..+.+|||+| +++||+|++.
T Consensus       100 a~IvMP~~tp---~~Kv~a~r~~GaeVil~g-~~~dda~~~a~~~a~~~---------G~~~i~pfD~p~viAGQGTi~l  166 (347)
T COG1171         100 ATIVMPETTP---KIKVDATRGYGAEVILHG-DNFDDAYAAAEELAEEE---------GLTFVPPFDDPDVIAGQGTIAL  166 (347)
T ss_pred             EEEEecCCCc---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHHc---------CCEEeCCCCCcceeecccHHHH
Confidence            9999999999   489999999999999997 67999999999999887         34568999988 6999999999


Q ss_pred             HHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCc
Q psy11239        169 EIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKR  248 (410)
Q Consensus       169 EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~  248 (410)
                      ||++|+..   .||+|+||+|+||+++|+.+-+..      ..|.++|+    ...|.++.-...       +.+.|...
T Consensus       167 Eileq~~~---~~d~v~vpvGGGGLisGia~~~k~------~~p~~~vI----GVEp~~a~~~~~-------Sl~~G~~~  226 (347)
T COG1171         167 EILEQLPD---LPDAVFVPVGGGGLISGIATALKA------LSPEIKVI----GVEPEGAPSMYA-------SLKAGKIV  226 (347)
T ss_pred             HHHHhccc---cCCEEEEecCccHHHHHHHHHHHH------hCCCCeEE----EEeeCCChHHHH-------HHHcCCce
Confidence            99999752   379999999999999999665532      23467777    445544432222       22334322


Q ss_pred             eEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc
Q psy11239        249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSN  320 (410)
Q Consensus       249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~  320 (410)
                       ++....++.+-++|.             .  .+.  ......++.+--+++.|+    ++.+..+...+-+
T Consensus       227 -~~~~~~~tiaDG~av-------------~--~~g--~~tf~i~~~~vd~~v~V~----e~ei~~am~~l~~  276 (347)
T COG1171         227 -VVLPDVGTIADGLAV-------------K--RPG--DLTFEILRELVDDIVLVD----EDEICAAMRDLFE  276 (347)
T ss_pred             -eecCCCCcccccccc-------------C--CCC--HHHHHHHHHcCCcEEEEC----HHHHHHHHHHHHh
Confidence             222335555444431             1  111  245668888888888885    4444445554443

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=8e-38  Score=294.20  Aligned_cols=195  Identities=22%  Similarity=0.185  Sum_probs=171.4

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++.++.... +++||+|+|.+||+||.|||.+++++..|++.|.   +.+|+|+||||+|++||++|+.+|++++
T Consensus        11 ~TPlvrL~~~~~~~-~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~i   89 (300)
T COG0031          11 NTPLVRLNRLSPGT-GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLI   89 (300)
T ss_pred             CCCcEeecccCCCC-CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEE
Confidence            79999999887665 6899999999999999999999999999998774   6789999999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeC-CC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQY-GN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~-g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      +|||+..+.   .++++|++|||+|+.++. +. +..+++++.+++++. ++.+++++|+.||    .+..+|+.|+|.|
T Consensus        90 ivmP~~~S~---er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~-p~~~~~~~Qf~Np----aN~~aH~~tT~~E  161 (300)
T COG0031          90 IVMPETMSQ---ERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEI-PGYAVWLNQFENP----ANPEAHYETTGPE  161 (300)
T ss_pred             EEeCCCCCH---HHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhC-CCceEchhhcCCC----ccHHHHHhhhHHH
Confidence            999986544   788999999999999986 33 888999999888876 3346665566642    2357899999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT  404 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~  404 (410)
                      |++|+.   ..+|+||+++|||||++|++++||+.  ++|+++|||++|.++++
T Consensus       162 I~~~~~---g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~  212 (300)
T COG0031         162 IWQQTD---GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSG  212 (300)
T ss_pred             HHHHhC---CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCC
Confidence            999996   45999999999999999999999965  89999999999999874

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=100.00  E-value=1.6e-37  Score=307.66  Aligned_cols=208  Identities=54%  Similarity=0.933  Sum_probs=174.7

Q ss_pred             eccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      +.+|||++++++...+++.+||+|+|++||+||||+|.++.++..+.+.|.+.+|+++|+||||+++|++|+.+|++|+|
T Consensus        32 ~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~i  111 (365)
T cd06446          32 GRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAETGAGQHGVATATACALFGLECEI  111 (365)
T ss_pred             CCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEE
Confidence            46999999999987776789999999999999999999999999899999988888789999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      |||+.++++++.|+.+|+.+||+|+.++..  .+++++.++.+...++.++.+|++++..+++||+.++.+|++|+|.||
T Consensus       112 vvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI  191 (365)
T cd06446         112 YMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEA  191 (365)
T ss_pred             EEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHH
Confidence            999754433447888999999999999742  367776666655444322356766666556888777899999999999


Q ss_pred             HHhhhhc-CCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCC
Q psy11239        354 HQQLNFN-FYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKR  403 (410)
Q Consensus       354 ~~q~~~~-~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~  403 (410)
                      ++|+++. +..||+||+|+|||||++|++.+++.. ++|||||||++++.+.
T Consensus       192 ~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~~~~~vigVep~gs~~~~  243 (365)
T cd06446         192 KKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEAGGCGLET  243 (365)
T ss_pred             HHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhCCCceEEEEcCCCCcccc
Confidence            9999733 257999999999999999999988654 9999999999988764

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=2.9e-38  Score=329.36  Aligned_cols=202  Identities=47%  Similarity=0.785  Sum_probs=174.8

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccc----cC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNI----LK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHG   76 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~----~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g   76 (410)
                      ++|+++++.|.++||||+++++|++.    +| +.+||+|+|++|||||||||+++.+++.+++.++..+|+++||||||
T Consensus       313 ~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG  392 (695)
T PRK13802        313 KELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHG  392 (695)
T ss_pred             HHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHH
Confidence            56788899999999999999998753    55 48999999999999999999999999999999988889888999999


Q ss_pred             HHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCcc
Q psy11239         77 VSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHP  154 (410)
Q Consensus        77 ~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  154 (410)
                      +|+|++|+++|++|+||||+.+.++++.|..+|+.|||+|+.++.+  +++++++++.+.+.++..+.+|++++..++||
T Consensus       393 ~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P  472 (695)
T PRK13802        393 VATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHP  472 (695)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCC
Confidence            9999999999999999999976555578999999999999999854  47888877777655543456788899888999


Q ss_pred             ccccccccchhHHHHHHHhhhhc-C-CCccEEEEecCCCCceeeccccccc
Q psy11239        155 YPTIVRDFQSIIGYEIHQQLNFN-F-YNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       155 ~~~~~~~g~~ti~~EI~~q~~~~-~-~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      |+.++.+||+|+|+||++|+... + ..||+||+|||+||+++|+..+|..
T Consensus       473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~  523 (695)
T PRK13802        473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD  523 (695)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh
Confidence            96656799999999999997421 2 2699999999999999999999854

>PRK11761 cysM cysteine synthase B; Provisional

Probab=100.00  E-value=4.3e-37  Score=296.35  Aligned_cols=191  Identities=16%  Similarity=0.171  Sum_probs=161.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++|.... +.+||+|+|++|||||||+|++.+++..+.+.|.   +..|+++|+||||+++|++|+.+|++|+
T Consensus        12 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~   90 (296)
T PRK11761         12 NTPLVKLQRLPPDR-GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMK   90 (296)
T ss_pred             CCceEeccccccCC-CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEE
Confidence            89999999888766 6899999999999999999999999999988775   2345669999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHccCCCceEEecCCCCCCCCh--hHHHhhhhhHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP--TIVRDFQSIIGY  351 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~t~g~  351 (410)
                      ||||+..++   .|+++|+.+||+|+.++.. +++++.+.+.++.++.  +.+|+       +||+  ++...||+|+|.
T Consensus        91 i~~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~--~~~~~-------~~~~n~~~~~~~~~t~~~  158 (296)
T PRK11761         91 LIMPENMSQ---ERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG--EGKVL-------DQFANPDNPLAHYETTGP  158 (296)
T ss_pred             EEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc--CCEec-------CCCCChhhHHHHhhchHH
Confidence            999986543   7899999999999999753 4888877777776664  44544       5553  235668999999


Q ss_pred             HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239        352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT  404 (410)
Q Consensus       352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~  404 (410)
                      ||++|++   ..+|+||+|+||||+++|++++|++.  ++|||||||++++...|
T Consensus       159 Ei~eq~~---~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g  210 (296)
T PRK11761        159 EIWRQTE---GRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG  210 (296)
T ss_pred             HHHHhcC---CCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC
Confidence            9999995   36899999999999999999999974  89999999998766543

>PRK08526 threonine dehydratase; Provisional

Probab=100.00  E-value=2.2e-37  Score=309.27  Aligned_cols=187  Identities=26%  Similarity=0.373  Sum_probs=163.8

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHc-CCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL-KKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~-g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..||++++++|+... +++||+|+|++|||||||+|++.+.+..+.+. +.+++ +++|+||||+++|++|+++|++|+|
T Consensus        19 ~~TPl~~~~~Ls~~~-g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gV-V~aSaGNhg~avA~aa~~~Gi~~~I   96 (403)
T PRK08526         19 NKTPFAYAPFLSKIS-GAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGV-IAASAGNHAQGVAISAKKFGIKAVI   96 (403)
T ss_pred             CCCCccchHHHHHHh-CCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEE-EEECccHHHHHHHHHHHHcCCCEEE
Confidence            489999999998877 68999999999999999999999998766543 34555 4599999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+..+.   .|+..++.|||+|+.++ ++++++...+.+.+++.  +.+|+       |||++. +.+||+|+|.||+
T Consensus        97 vmP~~~p~---~k~~~~r~~GA~Vv~~g-~~~~~a~~~a~~~a~~~--g~~~v-------~p~~~~~~i~G~gtia~EI~  163 (403)
T PRK08526         97 VMPEATPL---LKVSGTKALGAEVILKG-DNYDEAYAFALEYAKEN--NLTFI-------HPFEDEEVMAGQGTIALEML  163 (403)
T ss_pred             EEcCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEee-------CCCCCHHHHhhhHHHHHHHH
Confidence            99986544   77889999999999985 45999999999988776  46666       788554 7899999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +|++    .+|+||+|+|+||+++|++.+++..  ++|||||||++++.+
T Consensus       164 eq~~----~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~  209 (403)
T PRK08526        164 DEIS----DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAM  209 (403)
T ss_pred             HhcC----CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChH
Confidence            9995    6999999999999999999999864  999999999999864

>PLN03013 cysteine synthase

Probab=100.00  E-value=6.7e-37  Score=303.70  Aligned_cols=190  Identities=15%  Similarity=0.131  Sum_probs=162.4

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---C-ceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~-~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||++++.+.+.. +++||+|+|.+||+||||||.+.+++..+++.|.   + ..|+++|+||||+++|++|+.+|+++
T Consensus       123 ~TPLv~l~~l~~~~-g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~  201 (429)
T PLN03013        123 KTPMVYLNSIAKGC-VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRL  201 (429)
T ss_pred             CCCeEECccccccc-CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCE
Confidence            79999999887665 6799999999999999999999999999988775   2 45678999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCCh--hHHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP--TIVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~t~g  350 (410)
                      +||||+..++   .++.+|+.+||+|+.++... ++++.+.+.++++++  ..+|++      +||+  .++..||+|+|
T Consensus       202 ~VvvP~~~s~---~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~--~g~~~~------~qy~Np~n~~ah~~ttg  270 (429)
T PLN03013        202 ILTMPASMSM---ERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNT--PDAYML------QQFDNPANPKIHYETTG  270 (429)
T ss_pred             EEEECCCCcH---HHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhc--CCeEeC------CCCCCHHHHHHHHHHHH
Confidence            9999986554   88999999999999996443 677888888887764  234554      5552  23557999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      .||++|++   ..||+||+|+||||+++|+++++++.  ++|||||||++++.+
T Consensus       271 ~EI~eq~~---~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l  321 (429)
T PLN03013        271 PEIWDDTK---GKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDIL  321 (429)
T ss_pred             HHHHHhcC---CCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchh
Confidence            99999994   47999999999999999999999974  889999999999765

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=100.00  E-value=1.1e-37  Score=310.29  Aligned_cols=209  Identities=47%  Similarity=0.775  Sum_probs=169.4

Q ss_pred             hhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHH
Q psy11239          3 WFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATS   82 (410)
Q Consensus         3 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~   82 (410)
                      ++.+.+.++..++|||+++++|++.+|+.+||+|+|++|||||||||.++.++..+++++.+++|+++||||||+|+|++
T Consensus        38 ~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~  117 (385)
T TIGR00263        38 ELNELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATA  117 (385)
T ss_pred             HHHHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHH
Confidence            35566777777899999999999988668999999999999999999988888888888877788888899999999999


Q ss_pred             HHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCcccccccc
Q psy11239         83 CCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR  160 (410)
Q Consensus        83 a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  160 (410)
                      |+++|++|+||||+.+.+..+.|+.+|+.|||+|+.++.+  .++++++++.+.+.+...+.+|+.++..+++||...+.
T Consensus       118 a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~  197 (385)
T TIGR00263       118 AALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVR  197 (385)
T ss_pred             HHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHH
Confidence            9999999999999863333336888999999999999743  47787766665544333355777777777789954456


Q ss_pred             ccchhHHHHHHHhhhhc-CCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        161 DFQSIIGYEIHQQLNFN-FYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       161 ~g~~ti~~EI~~q~~~~-~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      +|++|++.||++|+... +..||+||+|+|+||+++|+..++.+.       +.++|+.
T Consensus       198 ~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~~-------~~~~iig  249 (385)
T TIGR00263       198 DFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFIDD-------PSVQLIG  249 (385)
T ss_pred             HHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhhC-------CCCeEEE
Confidence            99999999999997432 335899999999999999998877541       3567774

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>PRK12483 threonine dehydratase; Reviewed

Probab=100.00  E-value=4.2e-37  Score=313.96  Aligned_cols=188  Identities=23%  Similarity=0.303  Sum_probs=164.6

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+. +...+++| ++|+||||+++|++|+.+|++|+|
T Consensus        36 ~~TPL~~~~~Ls~~~-g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV-~aSaGNha~gvA~aA~~lGi~~~I  113 (521)
T PRK12483         36 RETPLQRAPNLSARL-GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVI-TASAGNHAQGVALAAARLGVKAVI  113 (521)
T ss_pred             CCCCeeEchhhhHhh-CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEE-EECCCHHHHHHHHHHHHhCCCEEE
Confidence            489999999999887 689999999999999999999999887544 34445555 599999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+..+.   .|+..++.+||+|+.+. ++++++.+.+.+..+++  +.+|+       |||++. +++|++|+|.||+
T Consensus       114 vmP~~tp~---~Kv~~~r~~GAeVil~g-~~~d~a~~~A~~la~e~--g~~~v-------~pfdd~~viaGqgTig~EI~  180 (521)
T PRK12483        114 VMPRTTPQ---LKVDGVRAHGGEVVLHG-ESFPDALAHALKLAEEE--GLTFV-------PPFDDPDVIAGQGTVAMEIL  180 (521)
T ss_pred             EECCCCCH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCeee-------CCCCChHHHHHHHHHHHHHH
Confidence            99987654   78999999999999984 45999999999998876  56676       888655 7889999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +|++   ..||+||+|+|+||+++|++.+++..  ++|||||||++++..
T Consensus       181 eQ~~---~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~  227 (521)
T PRK12483        181 RQHP---GPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCL  227 (521)
T ss_pred             HHhC---CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchh
Confidence            9995   36999999999999999999999864  999999999998754

>KOG1250|consensus

Probab=100.00  E-value=1.9e-37  Score=294.06  Aligned_cols=188  Identities=26%  Similarity=0.329  Sum_probs=167.9

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcC-CCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK-KKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g-~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..||+.++..|+... +.++|+|+|+++|+||||.|++.+++....+++ +.+++ ++|+||||.|+|++|+++|++++|
T Consensus        65 ~~TPl~~s~~lS~~~-g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gVi-asSaGNha~a~Ayaa~~LgipaTI  142 (457)
T KOG1250|consen   65 VETPLLKSVALSKKA-GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVI-ASSAGNHAQAAAYAARKLGIPATI  142 (457)
T ss_pred             ecccchhhhhhhhhc-CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceE-EecCccHHHHHHHHHHhcCCceEE
Confidence            479999988899888 899999999999999999999999987555444 55655 499999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  353 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei  353 (410)
                      |||..++.   .+++.++.+||+|+..  |. ++++...|.+.++++  +..|+       |||++. +++|++|++.||
T Consensus       143 VmP~~tp~---~kiq~~~nlGA~Vil~--G~~~deAk~~a~~lAke~--gl~yI-------~pfDhP~I~aGqgTig~EI  208 (457)
T KOG1250|consen  143 VMPVATPL---MKIQRCRNLGATVILS--GEDWDEAKAFAKRLAKEN--GLTYI-------PPFDHPDIWAGQGTIGLEI  208 (457)
T ss_pred             EecCCChH---HHHHHHhccCCEEEEe--cccHHHHHHHHHHHHHhc--Cceec-------CCCCCchhhcCcchHHHHH
Confidence            99986655   7899999999999986  55 999999999999998  67888       899887 999999999999


Q ss_pred             HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239        354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR  403 (410)
Q Consensus       354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~  403 (410)
                      .+|++   .++++||||||+||+++||+.++++.  +++|||||++++..|.
T Consensus       209 l~ql~---~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~  257 (457)
T KOG1250|consen  209 LEQLK---EPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFN  257 (457)
T ss_pred             HHhhc---CCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHH
Confidence            99996   45669999999999999999999975  9999999999998763

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=100.00  E-value=3.9e-37  Score=307.39  Aligned_cols=186  Identities=25%  Similarity=0.367  Sum_probs=163.3

Q ss_pred             ccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEc
Q psy11239        199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIG  278 (410)
Q Consensus       199 tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p  278 (410)
                      |||+++++|++.. +.+||+|+|++|||||||+|++.+++..+.+.+....|+++|+||||+++|++|+++|++|+||||
T Consensus         1 TPl~~~~~ls~~~-g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p   79 (380)
T TIGR01127         1 TPLIYSTTLSDIT-GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMP   79 (380)
T ss_pred             CCceehHHHHHHh-CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            7999999998877 689999999999999999999999998888766644566799999999999999999999999999


Q ss_pred             CCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHhh
Q psy11239        279 ENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQL  357 (410)
Q Consensus       279 ~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q~  357 (410)
                      +..+.   .|+++++.+||+|+.++ ++++++.+.+.++.++.  +.+|+       |||++. +.+|++|+|.||++|+
T Consensus        80 ~~~~~---~k~~~~~~~GA~V~~~~-~~~~~a~~~a~~~~~~~--~~~~~-------~~~~~~~~~~g~~t~~~Ei~~q~  146 (380)
T TIGR01127        80 ESAPP---SKVKATKSYGAEVILHG-DDYDEAYAFATSLAEEE--GRVFV-------HPFDDEFVMAGQGTIGLEIMEDI  146 (380)
T ss_pred             CCCcH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEec-------CCCCChhhhhhhHHHHHHHHHhC
Confidence            86554   78999999999999984 45999999998887765  45665       677443 6799999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +    .||+||+|+||||+++|++.++++.  ++|||||||++++.+
T Consensus       147 ~----~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~  189 (380)
T TIGR01127       147 P----DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSM  189 (380)
T ss_pred             C----CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence            4    6999999999999999999999864  899999999998754

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PLN02565 cysteine synthase

Probab=100.00  E-value=1.3e-36  Score=295.76  Aligned_cols=190  Identities=16%  Similarity=0.131  Sum_probs=159.2

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---C-ceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~-~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||++++.+.... +.+||+|+|.+|||||||+|.+.+++..+.+.|.   + ..|+++|+||||+|+|++|+.+|++|
T Consensus        15 ~TPLv~l~~l~~~~-~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~   93 (322)
T PLN02565         15 KTPLVYLNNVVDGC-VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKL   93 (322)
T ss_pred             CCceEEccccCCCC-CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeE
Confidence            79999987775443 4799999999999999999999999998887664   2 34667999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g  350 (410)
                      +||||+..+.   .|+++|+.+||+|+.++... ++++.+++.+++++.  +..|++      |||++  +...||+|+|
T Consensus        94 ~ivvp~~~~~---~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~--~~~~~~------~q~~n~~n~~~~~~t~a  162 (322)
T PLN02565         94 IITMPASMSL---ERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKT--PNSYIL------QQFENPANPKIHYETTG  162 (322)
T ss_pred             EEEeCCCCcH---HHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhC--CCcEee------cccCCHhHHHHHHHHHH
Confidence            9999986554   88999999999999986532 678888888877664  234554      55532  2456899999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +||++|+.   ..||+||+|+||||+++|++.++++.  ++|||+|||++|+.+
T Consensus       163 ~Ei~~q~~---~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~  213 (322)
T PLN02565        163 PEIWKGTG---GKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVL  213 (322)
T ss_pred             HHHHHhcC---CCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccc
Confidence            99999994   46999999999999999999999965  899999999999765

>TIGR01138 cysM cysteine synthase B

Probab=100.00  E-value=1e-36  Score=293.06  Aligned_cols=191  Identities=17%  Similarity=0.189  Sum_probs=161.9

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||++++++.... +.+||+|+|++||+||||+|++.+++..+.+.|.   +..|+++|+||||+++|++|+.+|++|+
T Consensus         8 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~   86 (290)
T TIGR01138         8 NTPLVRLQRMGPEN-GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMK   86 (290)
T ss_pred             CCceEEccccccCC-CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEE
Confidence            79999999988776 6899999999999999999999999999988776   2446679999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIGY  351 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~  351 (410)
                      ||||+..++   .|+++|+.+||+|+.++... ++++.+.+.++.++.  +.+|+       +||.+  +...||+|+|.
T Consensus        87 i~~p~~~~~---~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~--~~~~~-------~~~~~~~~~~~~~~t~~~  154 (290)
T TIGR01138        87 LLMPDNMSQ---ERKAAMRAYGAELILVTKEEGMEGARDLALELANRG--EGKLL-------DQFNNPDNPYAHYTSTGP  154 (290)
T ss_pred             EEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC--CCCCC-------CccCCcccHHHHhHhHHH
Confidence            999986543   78899999999999997533 778888888877765  33454       44422  24567899999


Q ss_pred             HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239        352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT  404 (410)
Q Consensus       352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~  404 (410)
                      ||++|++   ..+|+||+|+|||||++|++.++++.  ++|||+|||++++...|
T Consensus       155 Ei~~q~~---~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g  206 (290)
T TIGR01138       155 EIWQQTG---GRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG  206 (290)
T ss_pred             HHHHHcC---CCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC
Confidence            9999995   46899999999999999999999864  89999999999876544

Alternate name: O-acetylserine (thiol)-lyase

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-37  Score=287.23  Aligned_cols=202  Identities=53%  Similarity=0.881  Sum_probs=189.9

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~   81 (410)
                      ++|+++++.|.+|||||+..++|++.+ +++||+|+|++|+||++|..+++-+++++++++++.+|.++++|-||.|.|.
T Consensus        43 ~el~~~l~~Y~GRptpLy~a~~Lt~~~-gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAt  121 (396)
T COG0133          43 AELDYLLKDYAGRPTPLYFAERLTEHL-GAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATAT  121 (396)
T ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHhh-CceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHH
Confidence            567888999999999999999999998 5999999999999999999999999999999999999999888999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV  159 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  159 (410)
                      +|++||++|+|+|-..+-+|+..|.-.|+.+||+|+.|..|+  +.+++.+|++.|..+..+++|++|+..++|||+..+
T Consensus       122 a~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iV  201 (396)
T COG0133         122 AAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIV  201 (396)
T ss_pred             HHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHH
Confidence            999999999999998777777889999999999999999875  999999999999999999999999999999999888


Q ss_pred             cccchhHHHHHHHh-hhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239        160 RDFQSIIGYEIHQQ-LNFNFYNKKYILACVGGGSNALGRPTPIYYC  204 (410)
Q Consensus       160 ~~g~~ti~~EI~~q-~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~  204 (410)
                      ...|+.||.|.-+| ++..+..||.||.|||+|++..|+..||+.-
T Consensus       202 RdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d  247 (396)
T COG0133         202 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDD  247 (396)
T ss_pred             HHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCC
Confidence            99999999998888 4556789999999999999999999999864

>PRK07476 eutB threonine dehydratase; Provisional

Probab=100.00  E-value=5.1e-37  Score=299.63  Aligned_cols=186  Identities=21%  Similarity=0.253  Sum_probs=160.3

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.+.+..|+++|+||||+++|++|+++|++|+|||
T Consensus        19 ~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~v   97 (322)
T PRK07476         19 RTPLVASASLSARA-GVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIRATICM   97 (322)
T ss_pred             CCCceechhhHHhh-CCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEe
Confidence            79999999998877 68999999999999999999999999988877776535569999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+..++   .|+.+|+.|||+|+.++ ++++++.+.+.++.++.  +.+|+ .++.  +|+   ...|++|++.||++|+
T Consensus        98 p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~~~~-~~~~--n~~---~~~g~~t~~~Ei~~Q~  165 (322)
T PRK07476         98 SRLVPA---NKVDAIRALGAEVRIVG-RSQDDAQAEVERLVREE--GLTMV-PPFD--DPR---IIAGQGTIGLEILEAL  165 (322)
T ss_pred             CCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEe-CCCC--Ccc---eeechhHHHHHHHHhC
Confidence            986554   78999999999999985 44888888888887765  45555 3332  222   4688999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS  400 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~  400 (410)
                      +    .+|+||+|+|+||+++|++.+|+..  ++|||||||++++
T Consensus       166 ~----~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~  206 (322)
T PRK07476        166 P----DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGA  206 (322)
T ss_pred             c----CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCch
Confidence            5    5899999999999999999999865  8999999999876

>PLN02970 serine racemase

Probab=100.00  E-value=7.5e-37  Score=298.89  Aligned_cols=187  Identities=19%  Similarity=0.258  Sum_probs=158.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||++++++++.. +.+||+|+|++||+||||||++.+++..+.+.+....|+++|+||||+++|++|+.+|++|+|||
T Consensus        27 ~TPL~~~~~l~~~~-g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivv  105 (328)
T PLN02970         27 RTPVLTSSSLDALA-GRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYIVV  105 (328)
T ss_pred             CCCeeechhhHHhh-CCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            89999999998877 57999999999999999999999998877643333335569999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQ  356 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q  356 (410)
                      |+..++   .++..|+.+||+|+.++ ++++++.+.+.++.++.  +.+|+       +||++. ...|++|+|+||++|
T Consensus       106 p~~~~~---~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~la~~~--g~~~~-------~~~~n~~~~~g~~t~g~Ei~~q  172 (328)
T PLN02970        106 PKNAPA---CKVDAVIRYGGIITWCE-PTVESREAVAARVQQET--GAVLI-------HPYNDGRVISGQGTIALEFLEQ  172 (328)
T ss_pred             CCCCCH---HHHHHHHhcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEEe-------CCCCCcchhhehHHHHHHHHHh
Confidence            986544   67889999999999996 45888888888877653  45554       555332 567999999999999


Q ss_pred             hhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        357 LNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       357 ~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      ++    .||+||+|+|+||+++|++++|++.  ++|||+|||++++.+
T Consensus       173 l~----~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~  216 (328)
T PLN02970        173 VP----ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDA  216 (328)
T ss_pred             cc----CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHH
Confidence            95    5999999999999999999999874  899999999998743

>PRK08198 threonine dehydratase; Provisional

Probab=100.00  E-value=8.9e-37  Score=307.03  Aligned_cols=188  Identities=23%  Similarity=0.367  Sum_probs=162.4

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      ..|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+.+.+....|+++|+||||+++|++|+++|++|+||
T Consensus        21 ~~TPl~~~~~ls~~~-g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv   99 (404)
T PRK08198         21 RRTPLEYSRTLSELT-GAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIV   99 (404)
T ss_pred             CCCCceehhhHHHHh-CCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            489999999998877 6899999999999999999999999887764333334455999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+.   .|+++++.|||+|+.++ +++++++..+.+.+++.  +.+|+       +||++. ..+|++|+|.||++
T Consensus       100 ~p~~~~~---~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~~~~~~--g~~~~-------~~~~~~~~~~g~~t~a~EI~~  166 (404)
T PRK08198        100 MPETAPL---SKVKATRSYGAEVVLHG-DVYDEALAKAQELAEET--GATFV-------HPFDDPDVIAGQGTIGLEILE  166 (404)
T ss_pred             ECCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEec-------CCCCCccHHHHHHHHHHHHHH
Confidence            9986544   78899999999999985 45999999999888775  45655       666443 67899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      |++    .+|+||+|+||||+++|++.+|++.  ++|||||||++++.+
T Consensus       167 q~~----~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~  211 (404)
T PRK08198        167 DLP----DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAM  211 (404)
T ss_pred             hCC----CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHH
Confidence            995    6899999999999999999999864  899999999999764

>PRK06382 threonine dehydratase; Provisional

Probab=100.00  E-value=1.3e-36  Score=305.19  Aligned_cols=186  Identities=23%  Similarity=0.278  Sum_probs=161.3

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC-CceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~-~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      .|||+++++|+... +.+||+|+|++||+||||+|++.+++..+.+.+. ++ |+++|+||||+++|++|+.+|++|+||
T Consensus        25 ~TPl~~~~~ls~~~-g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~g-vv~aSsGN~g~a~A~aa~~~G~~~~iv  102 (406)
T PRK06382         25 RTPLIHSTTFGDEY-GGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNG-VITASAGNHAQGVAYAASINGIDAKIV  102 (406)
T ss_pred             CCCeeEhhhhHHHh-CCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCe-EEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            89999999998877 6899999999999999999999999876655443 34 456999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+.   .|+..++.+||+|+.++ ++++++...+.+.+++.  +.+|+       +||++. +.+|++|+|.||++
T Consensus       103 mp~~~~~---~k~~~~~~~GA~Vv~~~-~~~~~a~~~a~~la~~~--~~~~v-------~~~~~~~~i~g~~t~~~Ei~e  169 (406)
T PRK06382        103 MPEYTIP---QKVNAVEAYGAHVILTG-RDYDEAHRYADKIAMDE--NRTFI-------EAFNDRWVISGQGTIGLEIME  169 (406)
T ss_pred             EcCCCHH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEec-------CccCChHHHHHHHHHHHHHHH
Confidence            9986544   77889999999999885 44899998888887765  45666       777544 78899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      |++    .||+||+|+|+||+++|++.+++..  ++|||||||++++.+
T Consensus       170 q~~----~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~  214 (406)
T PRK06382        170 DLP----DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSM  214 (406)
T ss_pred             hcC----CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence            994    6999999999999999999999864  999999999999753

>PLN02550 threonine dehydratase

Probab=100.00  E-value=2e-36  Score=310.63  Aligned_cols=188  Identities=26%  Similarity=0.291  Sum_probs=164.8

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|++.. +.+||+|+|++||+||||+|++.+.+..+. +...+++| ++|+||||+++|++|+++|++|+|
T Consensus       108 ~~TPL~~s~~LS~~~-g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV-~aSaGNhAqgvA~aA~~lGika~I  185 (591)
T PLN02550        108 IESPLQLAKKLSERL-GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVI-CSSAGNHAQGVALSAQRLGCDAVI  185 (591)
T ss_pred             cCChhhhhHHhhHhh-CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEE-EECCCHHHHHHHHHHHHcCCCEEE
Confidence            489999999999887 689999999999999999999999988664 44455655 599999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+..+.   .|++.++.+||+|+.++ ++++++.+.+.++.++.  +.+|+       |||++. +++|++|+|.||+
T Consensus       186 vmP~~tp~---~Kv~~~r~~GAeVvl~g-~~~dea~~~A~~la~e~--g~~fi-------~pfddp~viaGqgTig~EI~  252 (591)
T PLN02550        186 AMPVTTPE---IKWQSVERLGATVVLVG-DSYDEAQAYAKQRALEE--GRTFI-------PPFDHPDVIAGQGTVGMEIV  252 (591)
T ss_pred             EECCCCCH---HHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEEE-------CCCCChHHHHHHHHHHHHHH
Confidence            99986554   78899999999999984 44999999999888776  46777       888555 7889999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +|++   ..+|+||+|+|+||+++|++.++++.  ++|||||||++++..
T Consensus       253 eQl~---~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~  299 (591)
T PLN02550        253 RQHQ---GPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAM  299 (591)
T ss_pred             HHcC---CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence            9996   35999999999999999999999864  999999999988654

>PRK06110 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=295.76  Aligned_cols=188  Identities=18%  Similarity=0.185  Sum_probs=160.3

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC-CceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~-~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.+. ...|+++|+||||+++|++|+++|++|+|
T Consensus        20 ~~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i   98 (322)
T PRK06110         20 PPTPQYRWPLLAERL-GCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAATI   98 (322)
T ss_pred             cCCCcccchhHHHHh-CCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            489999999998877 5799999999999999999999999988876543 22356699999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ  355 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~  355 (410)
                      |||+..++   .+.++++.+||+|+.++ ++++++.+++.++.+++  +.+|+       ++|+.....||+|+|.||++
T Consensus        99 vvp~~~~~---~k~~~i~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~~~-------~~~~~~~~~G~~t~~~Ei~~  165 (322)
T PRK06110         99 VVPHGNSV---EKNAAMRALGAELIEHG-EDFQAAREEAARLAAER--GLHMV-------PSFHPDLVRGVATYALELFR  165 (322)
T ss_pred             EEcCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEc-------CCCCChHHhccchHHHHHHh
Confidence            99986544   67899999999999985 45899999888887775  44444       44532356799999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      |++    .+|+||+|+|+||+++|++.++++.  ++|||+|||++++.+
T Consensus       166 q~~----~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~  210 (322)
T PRK06110        166 AVP----DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAY  210 (322)
T ss_pred             hCC----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHH
Confidence            994    6899999999999999999999754  899999999998754

>PRK08638 threonine dehydratase; Validated

Probab=100.00  E-value=2.1e-36  Score=295.60  Aligned_cols=185  Identities=23%  Similarity=0.342  Sum_probs=158.7

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHH-cCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|.+.. +.+||+|+|++||+||||||++.+++..+.+ .+.++ |+++|+||||+++|++|+.+|++|+|
T Consensus        26 ~~TPlv~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~-vv~~SsGN~g~alA~~aa~~G~~~~i  103 (333)
T PRK08638         26 RKTPLPRSNYLSERC-KGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKG-VVACSAGNHAQGVALSCALLGIDGKV  103 (333)
T ss_pred             cCCCceechhhHHhh-CCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCe-EEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence            389999999998776 6799999999999999999999999887654 44444 55699999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+..++   .|+++++.+||+|+.++ ++++++++.+.+.+++.  +.+|+       +||++. ...|++|+|+||+
T Consensus       104 v~p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~a~~~--g~~~~-------~~~~~~~~~~g~~t~a~Ei~  170 (333)
T PRK08638        104 VMPKGAPK---SKVAATCGYGAEVVLHG-DNFNDTIAKVEEIVEEE--GRTFI-------PPYDDPKVIAGQGTIGLEIL  170 (333)
T ss_pred             EeCCCCcH---HHHHHHHHcCCEEEEEC-cCHHHHHHHHHHHHHhc--CCEEc-------CcCCCcchhccccHHHHHHH
Confidence            99986544   78999999999999985 55899998888888775  45554       555222 5789999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS  400 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~  400 (410)
                      +|+.    .+|+||+|+|+||+++|++.+|++.  ++|||||||++++
T Consensus       171 ~q~~----~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~  214 (333)
T PRK08638        171 EDLW----DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVH  214 (333)
T ss_pred             hhcC----CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCc
Confidence            9994    5899999999999999999999874  8999999999984

>PRK11761 cysM cysteine synthase B; Provisional

Probab=100.00  E-value=2.8e-36  Score=290.71  Aligned_cols=181  Identities=15%  Similarity=0.127  Sum_probs=148.1

Q ss_pred             hhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHH
Q psy11239          5 DLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTAT   81 (410)
Q Consensus         5 ~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~   81 (410)
                      +.|..  ...+|||+++++|.... +.+||+|+|++|||||||||.+...+..+.+.+.   +..|+++||||||+|+|+
T Consensus         4 ~~i~~--~~g~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~   80 (296)
T PRK11761          4 PTLED--TIGNTPLVKLQRLPPDR-GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAM   80 (296)
T ss_pred             ccHHH--hcCCCceEeccccccCC-CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHH
Confidence            34444  46899999999998776 6899999999999999999988777777766654   245666799999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc-
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV-  159 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  159 (410)
                      +|+.+|+||+||||+.++   +.|+++|+.|||+|+.++.. +++++.+.+.++.++.  + +      .+.+||+|+. 
T Consensus        81 ~a~~~G~~~~i~~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~--~-~------~~~~~~~n~~~  148 (296)
T PRK11761         81 IAAIKGYRMKLIMPENMS---QERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG--E-G------KVLDQFANPDN  148 (296)
T ss_pred             HHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc--C-C------EecCCCCChhh
Confidence            999999999999999887   58999999999999999842 5788877777776543  1 2      2356776652 


Q ss_pred             -cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        160 -RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       160 -~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                       ..||+|+++||++|++  + .+|+||+|+|+||+++|+.+.|.+
T Consensus       149 ~~~~~~t~~~Ei~eq~~--~-~~d~iv~~vG~Gg~~~Gi~~~lk~  190 (296)
T PRK11761        149 PLAHYETTGPEIWRQTE--G-RITHFVSSMGTTGTIMGVSRYLKE  190 (296)
T ss_pred             HHHHhhchHHHHHHhcC--C-CCCEEEecCCcHHHHHHHHHHHHH
Confidence             4578999999999964  2 479999999999999999777754

>PRK08526 threonine dehydratase; Provisional

Probab=100.00  E-value=6.2e-37  Score=306.02  Aligned_cols=173  Identities=27%  Similarity=0.332  Sum_probs=148.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHh-cCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL-KKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~-~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+....+. +.+++| ++|+||||+++|++|+.+|++|
T Consensus        17 ~i~~TPl~~~~~Ls~~~-g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gVV-~aSaGNhg~avA~aa~~~Gi~~   94 (403)
T PRK08526         17 FVNKTPFAYAPFLSKIS-GAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVI-AASAGNHAQGVAISAKKFGIKA   94 (403)
T ss_pred             cCCCCCccchHHHHHHh-CCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEEE-EECccHHHHHHHHHHHHcCCCE
Confidence            56899999999999887 68999999999999999999887665444333 334454 4699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.+|   +.|++.++.|||+|+.++ ++++++++.+.+++++.  +.       .+.|||+++ .++||+|+|.|
T Consensus        95 ~IvmP~~~p---~~k~~~~r~~GA~Vv~~g-~~~~~a~~~a~~~a~~~--g~-------~~v~p~~~~~~i~G~gtia~E  161 (403)
T PRK08526         95 VIVMPEATP---LLKVSGTKALGAEVILKG-DNYDEAYAFALEYAKEN--NL-------TFIHPFEDEEVMAGQGTIALE  161 (403)
T ss_pred             EEEEcCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EeeCCCCCHHHHhhhHHHHHH
Confidence            999999988   489999999999999997 68999999999987764  22       347889877 58999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      |++|++    .||+||+|+|+||+++|+...+..
T Consensus       162 I~eq~~----~~D~vvvpvGgGGl~aGia~~~k~  191 (403)
T PRK08526        162 MLDEIS----DLDMVVVPVGGGGLISGIASAAKQ  191 (403)
T ss_pred             HHHhcC----CCCEEEEecChHHHHHHHHHHHHH
Confidence            999964    489999999999999999877754

>TIGR01136 cysKM cysteine synthases

Probab=100.00  E-value=6.2e-36  Score=289.37  Aligned_cols=191  Identities=18%  Similarity=0.174  Sum_probs=162.3

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||++++.|+... +.+||+|+|++|||||||+|++.+++..+.+.|.   +..|+++|+||||+++|++|+++|++|+
T Consensus         7 ~TPL~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~   85 (299)
T TIGR01136         7 NTPLVRLNRLAPGC-DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLI   85 (299)
T ss_pred             CCceEEccccCCCC-CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEE
Confidence            79999999998776 5799999999999999999999999998888775   2345679999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIGY  351 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~  351 (410)
                      ||||+..++   .|+++|+.+||+|+.++... ++++.+.+.++.++.  +.+|++      ++|++  +...||+|++.
T Consensus        86 i~vp~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~------~~~~~~~~~~~g~~t~~~  154 (299)
T TIGR01136        86 LTMPETMSL---ERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAET--NKYVML------DQFENPANPEAHYKTTGP  154 (299)
T ss_pred             EEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhC--CCeEec------CCCCCchhHHHHHHHHHH
Confidence            999986544   78999999999999996432 788888888877664  345554      45422  24679999999


Q ss_pred             HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239        352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR  403 (410)
Q Consensus       352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~  403 (410)
                      ||++|++   ..||+||+|+|+||+++|++.+|++.  .+|||+|||++++.+.
T Consensus       155 Ei~~ql~---~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~  205 (299)
T TIGR01136       155 EIWRDTD---GRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLS  205 (299)
T ss_pred             HHHHhcC---CCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCcccc
Confidence            9999995   36999999999999999999999864  9999999999997654

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=100.00  E-value=5.4e-36  Score=295.65  Aligned_cols=190  Identities=16%  Similarity=0.183  Sum_probs=159.4

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||++++++.... +++||+|+|++||+||||+|.+.+++..+++.|.    ...|+++|+||||+++|++|+.+|++|
T Consensus        59 ~TPl~~l~~l~~~~-g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~  137 (368)
T PLN02556         59 KTPLVYLNKVTEGC-GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKM  137 (368)
T ss_pred             CCccEEcccccccc-CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCE
Confidence            79999999887665 6899999999999999999999999999988764    234667999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g  350 (410)
                      +||||+..+.   .|+++|+.+||+|+.++... +...++++.++++++ ++. |++      +||.+  +...||.|+|
T Consensus       138 ~ivvp~~~~~---~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~-~~~-~~~------~q~~np~~~~~g~~ttg  206 (368)
T PLN02556        138 ILTMPSYTSL---ERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLEST-PDA-FML------QQFSNPANTQVHFETTG  206 (368)
T ss_pred             EEEECCCCCH---HHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhc-CCC-Ccc------CCCCCHHHHHHHHHHHH
Confidence            9999986544   78999999999999986432 456777777777765 233 444      45522  2457999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      .||++|+.   ..+|+||+|+|||||++|+++++++.  ++|||||||++++.+
T Consensus       207 ~EI~eq~~---~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~  257 (368)
T PLN02556        207 PEIWEDTL---GQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVL  257 (368)
T ss_pred             HHHHHhcC---CCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccc
Confidence            99999984   47999999999999999999999874  899999999998654

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=100.00  E-value=1e-36  Score=302.06  Aligned_cols=210  Identities=51%  Similarity=0.830  Sum_probs=168.7

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~   81 (410)
                      +.+..+++.+...+|||+++++|++.+|+.+||+|+|++|||||||||.++..+..+.+.+...+|+++||||||+|+|+
T Consensus        21 ~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~~~vv~~~ssGN~g~alA~  100 (365)
T cd06446          21 EELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAETGAGQHGVATAT  100 (365)
T ss_pred             HHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHH
Confidence            34566677777789999999999988877899999999999999999998888877888887788887789999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC--CCHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY--GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV  159 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  159 (410)
                      +|+.+|++|+||||+..++..+.|+.+|+.|||+|+.++.  +++++++..+.+.+.+...+.+|++++..+++||+...
T Consensus       101 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~  180 (365)
T cd06446         101 ACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMV  180 (365)
T ss_pred             HHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHH
Confidence            9999999999999987554445789999999999999984  24677776666654443224456566655567886556


Q ss_pred             cccchhHHHHHHHhhhhcC-CCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        160 RDFQSIIGYEIHQQLNFNF-YNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       160 ~~g~~ti~~EI~~q~~~~~-~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|++|+++||++|+...+ ..||+||+|+|+||+++|+...+...       +.++|+.
T Consensus       181 ~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~-------~~~~vig  233 (365)
T cd06446         181 RDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIND-------KDVKLIG  233 (365)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhC-------CCceEEE
Confidence            8999999999999975322 45999999999999999997776541       1466774

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=6.7e-37  Score=319.94  Aligned_cols=209  Identities=50%  Similarity=0.808  Sum_probs=177.5

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~   81 (410)
                      ++|.++++.+..+||||+++++|++.+ +.+||+|+|++|||||||+|+++.+++.+++++++++|+++|+||||+|+|+
T Consensus       258 ~~~~~~~~~~~grpTPL~~~~~Ls~~~-G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~  336 (610)
T PRK13803        258 KTFKRLLQNYAGRPTPLTEAKRLSDIY-GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATAT  336 (610)
T ss_pred             HHHHHHHHHhCCCCCcceeHHHHHHhh-CCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHH
Confidence            567888999999999999999999887 6899999999999999999999988888999998888988889999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV  159 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  159 (410)
                      +|+++|++|+||||+.+.++++.|+.+|+.|||+|+.++.+  ++.+++.++.+.+....++.+|++++..++|||...+
T Consensus       337 ~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v  416 (610)
T PRK13803        337 ACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMV  416 (610)
T ss_pred             HHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHH
Confidence            99999999999999876555567999999999999999854  4778887777766333345678888777889996545


Q ss_pred             cccchhHHHHHHHhhh-hcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        160 RDFQSIIGYEIHQQLN-FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       160 ~~g~~ti~~EI~~q~~-~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ..+|+|++.||.+|+. ..+..||+||+|+|+||+++|+..+|.+       .+.++|+.
T Consensus       417 ~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-------~~~v~iig  469 (610)
T PRK13803        417 AYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-------DPSVKLIG  469 (610)
T ss_pred             HHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-------CCCceEEE
Confidence            6799999999999974 2245799999999999999999888843       13567774

>TIGR02079 THD1 threonine dehydratase

Probab=100.00  E-value=2.6e-36  Score=302.86  Aligned_cols=189  Identities=21%  Similarity=0.343  Sum_probs=159.7

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|++.. +.+||+|+|++|||||||+|++.+.+..+. ....++ |+++|+||||+++|++|+++|++|+|
T Consensus        15 ~~TPl~~~~~ls~~~-g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~g-vv~aSsGN~g~a~A~~a~~~G~~~~i   92 (409)
T TIGR02079        15 PHTPLQLNERLSEKY-GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKG-VVCASAGNHAQGFAYACRHLGVHGTV   92 (409)
T ss_pred             CCCCccccHHHHHHh-CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCE-EEEECccHHHHHHHHHHHHcCCCEEE
Confidence            389999999998877 689999999999999999999999887543 333444 55699999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEe-C-CCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQ-Y-GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  352 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~-~-g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~E  352 (410)
                      |||+..+.   .|+.+++.+||+|+.+. . ++++++.+++.+.+++.  +.+|+       +||++. +.+|++|+|.|
T Consensus        93 v~p~~~~~---~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~--g~~~~-------~~~~~~~~~~g~~ti~~E  160 (409)
T TIGR02079        93 FMPATTPK---QKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDH--GGTFI-------PPFDDPRIIEGQGTVAAE  160 (409)
T ss_pred             EECCCCCH---HHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc--CCEEe-------CCCCCHhHhhhhHHHHHH
Confidence            99986544   78899999999854221 2 34999999999988876  45666       777544 77899999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      |++|++   ..||+||+|+|+||+++|++.++++.  ++|||||||++++..
T Consensus       161 i~~q~~---~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~  209 (409)
T TIGR02079       161 ILDQLP---EKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSM  209 (409)
T ss_pred             HHHhcC---CCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcH
Confidence            999996   36999999999999999999999864  899999999998754

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PLN02565 cysteine synthase

Probab=100.00  E-value=4.4e-36  Score=292.11  Aligned_cols=178  Identities=16%  Similarity=0.087  Sum_probs=144.8

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ...+|||++++.++... +.+||+|+|++|||||||||.+...+..+.+.+.   + ..|+++||||||+|+|++|+.+|
T Consensus        12 ~ig~TPLv~l~~l~~~~-~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G   90 (322)
T PLN02565         12 LIGKTPLVYLNNVVDGC-VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKG   90 (322)
T ss_pred             HhCCCceEEccccCCCC-CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcC
Confidence            46799999998876543 5799999999999999999988777666665543   3 34677799999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~  164 (410)
                      +||+||||+.++   +.|+++|+.|||+|+.+++. +++++.+.+.+++++.+ + .|      +.+||+|+.  ..||+
T Consensus        91 ~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~-~-~~------~~~q~~n~~n~~~~~~  159 (322)
T PLN02565         91 YKLIITMPASMS---LERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTP-N-SY------ILQQFENPANPKIHYE  159 (322)
T ss_pred             CeEEEEeCCCCc---HHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCC-C-cE------eecccCCHhHHHHHHH
Confidence            999999999988   58999999999999999743 46788888888776531 2 23      356676552  36899


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYC  204 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~  204 (410)
                      |+|+||++|+.  + .||+||+|+|+||+++|+.+.|.+.
T Consensus       160 t~a~Ei~~q~~--~-~~d~vv~~vG~GG~l~Gi~~~lk~~  196 (322)
T PLN02565        160 TTGPEIWKGTG--G-KVDAFVSGIGTGGTITGAGKYLKEQ  196 (322)
T ss_pred             HHHHHHHHhcC--C-CCCEEEEcCCchHHHHHHHHHHHHh
Confidence            99999999953  2 4899999999999999998777543

>PRK08639 threonine dehydratase; Validated

Probab=100.00  E-value=2.3e-36  Score=304.55  Aligned_cols=191  Identities=20%  Similarity=0.326  Sum_probs=160.5

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|++.. +.+||+|+|++|||||||+|++.+++.... +...++ |+++|+||||+++|++|+++|++|+|
T Consensus        24 ~~TPl~~~~~ls~~~-g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~~-Vv~aSsGN~g~alA~~a~~~G~~~~I  101 (420)
T PRK08639         24 PETPLQRNDYLSEKY-GANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAG-VVCASAGNHAQGVAYACRHLGIPGVI  101 (420)
T ss_pred             cCCCccchHHHHHHh-CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCE-EEEECccHHHHHHHHHHHHcCCCEEE
Confidence            489999999998776 689999999999999999999999987643 233344 56699999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEe-CC-CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQ-YG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  352 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~-~g-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~E  352 (410)
                      |||+..+.   .|+..++.+||+|+.+. .+ +++++.+.+.+++++.  +.+|+       |||++. +.+|++|+|.|
T Consensus       102 vmP~~~~~---~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~--g~~~~-------~~~~~~~~~~G~~tig~E  169 (420)
T PRK08639        102 FMPVTTPQ---QKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET--GATFI-------PPFDDPDVIAGQGTVAVE  169 (420)
T ss_pred             EECCCChH---HHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc--CCccc-------CCCCChhHhcchhHHHHH
Confidence            99986544   78899999999854332 24 4999999999988876  45666       788554 78999999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      |++|++..+ .||+||+|+|+||+++|++.++++.  ++|||||||++++.+
T Consensus       170 I~eq~~~~~-~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~  220 (420)
T PRK08639        170 ILEQLEKEG-SPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASM  220 (420)
T ss_pred             HHHhccccC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcH
Confidence            999996211 3999999999999999999999864  899999999998764

>PRK08813 threonine dehydratase; Provisional

Probab=100.00  E-value=6.3e-36  Score=291.84  Aligned_cols=179  Identities=22%  Similarity=0.307  Sum_probs=155.8

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      ..|||++++.+       .||+|+|++|||||||+|++.+++..+.+.+....|+++|+||||+|+|++|+.+|++|+||
T Consensus        38 ~~TPL~~~~~l-------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~Iv  110 (349)
T PRK08813         38 SPTPLHYAERF-------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAITV  110 (349)
T ss_pred             CCCCeEECCCC-------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            48999876543       49999999999999999999999998888777544667999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+.   .|+..++.+||+|+.++ ++++++...+.+++++.  +.+|+       +||++. +.+||+|+|.||++
T Consensus       111 vP~~~~~---~K~~~i~~~GAeVv~~g-~~~~~a~~~a~~la~~~--g~~~v-------~~~~np~~i~G~~Tig~EI~e  177 (349)
T PRK08813        111 MPHGAPQ---TKIAGVAHWGATVRQHG-NSYDEAYAFARELADQN--GYRFL-------SAFDDPDVIAGQGTVGIELAA  177 (349)
T ss_pred             EcCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEc-------CccCChHHHHHHHHHHHHHHc
Confidence            9986544   88999999999999984 55999999998888775  45555       666443 77899999999998


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcCCCeEEEEccCCCCc
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISK  401 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~~~~vigVe~~g~~~  401 (410)
                      |.      ||+||+|+|+||+++|++.+++++++|||||||++++.
T Consensus       178 ~~------pD~VvvpvGgGGliaGia~~lk~~~~rVigVqpega~~  217 (349)
T PRK08813        178 HA------PDVVIVPIGGGGLASGVALALKSQGVRVVGAQVEGVDS  217 (349)
T ss_pred             CC------CCEEEEEeCccHHHHHHHHHHhcCCCEEEEEEECCCch
Confidence            63      79999999999999999999998899999999999864

>PLN02550 threonine dehydratase

Probab=100.00  E-value=5.5e-36  Score=307.35  Aligned_cols=191  Identities=26%  Similarity=0.262  Sum_probs=158.7

Q ss_pred             hhhhhcC---CCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHH-HHhcCCceEEEeCccHHHHHH
Q psy11239          4 FDLFYNP---KKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA-KFLKKKRIICETGAGMHGVST   79 (410)
Q Consensus         4 ~~~~~~~---~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~-~~~~~~~~v~~~ssGN~g~a~   79 (410)
                      +..|+++   -...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+... ++....++|+ +|+||||+++
T Consensus        95 ~~~il~~~v~~~i~~TPL~~s~~LS~~~-g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~-aSaGNhAqgv  172 (591)
T PLN02550         95 LTNILSAKVYDVAIESPLQLAKKLSERL-GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVIC-SSAGNHAQGV  172 (591)
T ss_pred             HHHHHhhhhhccccCChhhhhHHhhHhh-CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEE-ECCCHHHHHH
Confidence            4455544   256899999999999988 68999999999999999999887665543 4444556666 6999999999


Q ss_pred             HHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-
Q psy11239         80 ATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-  158 (410)
Q Consensus        80 A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-  158 (410)
                      |++|+++|++|+||||+.+|   ..|++.++.|||+|+.++ ++++++.+.+.+++++.  +.       .+.+||+++ 
T Consensus       173 A~aA~~lGika~IvmP~~tp---~~Kv~~~r~~GAeVvl~g-~~~dea~~~A~~la~e~--g~-------~fi~pfddp~  239 (591)
T PLN02550        173 ALSAQRLGCDAVIAMPVTTP---EIKWQSVERLGATVVLVG-DSYDEAQAYAKQRALEE--GR-------TFIPPFDHPD  239 (591)
T ss_pred             HHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CC-------EEECCCCChH
Confidence            99999999999999999998   489999999999999997 67999999999888764  22       346899887 


Q ss_pred             ccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        159 VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       159 ~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      .++||+|+|.||++|++  + .+|+||+|+|+||+++|+.+.+..+      .+.++|+.
T Consensus       240 viaGqgTig~EI~eQl~--~-~~D~VvvpVGgGGLiaGia~~lK~l------~p~vkVIG  290 (591)
T PLN02550        240 VIAGQGTVGMEIVRQHQ--G-PLHAIFVPVGGGGLIAGIAAYVKRV------RPEVKIIG  290 (591)
T ss_pred             HHHHHHHHHHHHHHHcC--C-CCCEEEEEeChhHHHHHHHHHHHHh------CCCCEEEE
Confidence            58999999999999964  2 4899999999999999997776542      24678884

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=100.00  E-value=4.1e-36  Score=292.11  Aligned_cols=194  Identities=22%  Similarity=0.209  Sum_probs=157.4

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC--CceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      .|||++++++.+.. +.+||+|+|++||+||||+|++.+++..+.+.+.  ...|+++|+||||+++|++|+.+|++|+|
T Consensus         1 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i   79 (316)
T cd06448           1 KTPLIESTALSKTA-GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTI   79 (316)
T ss_pred             CCCccccchhhHhh-CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence            48999999998776 6899999999999999999999999999988873  33455699999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ  355 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~  355 (410)
                      |||+..++   .++++|+.+||+|+.++...++++.+.+.+..++. ++.+|+ .++.  ||+   ...|++|+|+||++
T Consensus        80 v~p~~~~~---~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~~--n~~---~~~g~~t~~~Ei~~  149 (316)
T cd06448          80 VVPESTKP---RVVEKLRDEGATVVVHGKVWWEADNYLREELAEND-PGPVYV-HPFD--DPL---IWEGHSSMVDEIAQ  149 (316)
T ss_pred             EECCCCCH---HHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhcc-CCcEEe-CCCC--Cch---hhccccHHHHHHHH
Confidence            99986543   78999999999999986322666665565555442 234555 3322  222   56788999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC---CCeEEEEccCCCCcCC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS---NFKLVAIESGGISKKR  403 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigVe~~g~~~~~  403 (410)
                      |++.. ..||+||+|+|+||+++|++++|++.   +++||+|||++++.+.
T Consensus       150 q~~~~-~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~  199 (316)
T cd06448         150 QLQSQ-EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLN  199 (316)
T ss_pred             Hcccc-CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHH
Confidence            99621 26999999999999999999999863   7999999999997653

>PRK07476 eutB threonine dehydratase; Provisional

Probab=100.00  E-value=1.3e-36  Score=296.71  Aligned_cols=189  Identities=21%  Similarity=0.236  Sum_probs=156.1

Q ss_pred             hhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHH
Q psy11239          5 DLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCC   84 (410)
Q Consensus         5 ~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~   84 (410)
                      +.|.+  .+.+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+....|+++|+||||+|+|++|+
T Consensus        11 ~~i~~--~i~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~   87 (322)
T PRK07476         11 RRIAG--RVRRTPLVASASLSARA-GVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAAR   87 (322)
T ss_pred             HHHhC--CCCCCCceechhhHHhh-CCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHH
Confidence            45544  56899999999999887 6899999999999999999988777666666665553555699999999999999


Q ss_pred             HcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccc
Q psy11239         85 LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQ  163 (410)
Q Consensus        85 ~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~  163 (410)
                      .+|+||+||||+.++   +.|+.+|+.|||+|+.++ ++++++++.+.+++++.  +.+       +.+||+|+ .+.|+
T Consensus        88 ~~G~~~~i~vp~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~~-------~~~~~~n~~~~~g~  154 (322)
T PRK07476         88 ALGIRATICMSRLVP---ANKVDAIRALGAEVRIVG-RSQDDAQAEVERLVREE--GLT-------MVPPFDDPRIIAGQ  154 (322)
T ss_pred             HhCCCEEEEeCCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCE-------EeCCCCCcceeech
Confidence            999999999999988   589999999999999998 67888988888887654  222       35677666 47899


Q ss_pred             hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      +|+++||++|++    .+|+||+|+|+||+++|+...|...      .+.++|+.-
T Consensus       155 ~t~~~Ei~~Q~~----~~d~iv~~vG~GG~~~Gv~~~~k~~------~~~~~vigV  200 (322)
T PRK07476        155 GTIGLEILEALP----DVATVLVPLSGGGLASGVAAAVKAI------RPAIRVIGV  200 (322)
T ss_pred             hHHHHHHHHhCc----CCCEEEEEcChHHHHHHHHHHHHHh------CCCCEEEEE
Confidence            999999999964    3799999999999999998777542      246777753

>TIGR01139 cysK cysteine synthase A

Probab=100.00  E-value=8.3e-36  Score=288.42  Aligned_cols=193  Identities=20%  Similarity=0.187  Sum_probs=160.0

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++ .... +.+||+|+|++|||||||+|++.+++..+.+.|.   +..|+++|+||||+++|++|+++|++|+
T Consensus         7 ~TPl~~~~~-~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~   84 (298)
T TIGR01139         7 NTPLVRLNR-IEGC-NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLI   84 (298)
T ss_pred             CCceEEccc-cCCC-CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEE
Confidence            699999888 3444 6899999999999999999999999998888775   2345679999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      ||||+..++   .++++|+.+||+|+.++... ++++++++.++.++. ++.+|+++++.|  |.  +...||+|++.||
T Consensus        85 i~vp~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~n--~~--~~~~g~~t~~~Ei  156 (298)
T TIGR01139        85 LTMPETMSI---ERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAAST-PNSYFMLQQFEN--PA--NPEIHRKTTGPEI  156 (298)
T ss_pred             EEeCCccCH---HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhC-CCcEEcccccCC--cc--cHHHHHHHHHHHH
Confidence            999986544   78999999999999996432 567888888877665 223545544442  21  2467999999999


Q ss_pred             HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239        354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR  403 (410)
Q Consensus       354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~  403 (410)
                      ++|++   ..||+||+|+|+||+++|++.+|++.  ++|||+|||.+++.+.
T Consensus       157 ~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~  205 (298)
T TIGR01139       157 WRDTD---GKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLS  205 (298)
T ss_pred             HHHhC---CCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccC
Confidence            99995   36999999999999999999999874  9999999999987654

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>PRK08638 threonine dehydratase; Validated

Probab=100.00  E-value=1.4e-36  Score=296.84  Aligned_cols=189  Identities=21%  Similarity=0.250  Sum_probs=155.0

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      .+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+....+......|+++||||||+|+|++|+.+|++|+
T Consensus        24 ~i~~TPlv~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~  102 (333)
T PRK08638         24 RIRKTPLPRSNYLSERC-KGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVALSCALLGIDGK  102 (333)
T ss_pred             cCcCCCceechhhHHhh-CCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence            56899999999999887 57999999999999999999887766544432223456667999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+.+|+.|||+|+.++ ++++++++.+.+.+++.  +.+       +.+||++| .+.||+|+++||
T Consensus       103 iv~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~a~~~--g~~-------~~~~~~~~~~~~g~~t~a~Ei  169 (333)
T PRK08638        103 VVMPKGAP---KSKVAATCGYGAEVVLHG-DNFNDTIAKVEEIVEEE--GRT-------FIPPYDDPKVIAGQGTIGLEI  169 (333)
T ss_pred             EEeCCCCc---HHHHHHHHHcCCEEEEEC-cCHHHHHHHHHHHHHhc--CCE-------EcCcCCCcchhccccHHHHHH
Confidence            99999887   589999999999999997 78899999888887764  222       35777666 479999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCch
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGA  228 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS  228 (410)
                      ++|+.    .+|+||+|+|+||+++|+...|.+.      .+.++|+.    .+|.++
T Consensus       170 ~~q~~----~~d~vv~~vG~Gg~~~Gv~~~lk~~------~~~~~vig----Vep~g~  213 (333)
T PRK08638        170 LEDLW----DVDTVIVPIGGGGLIAGIAVALKSI------NPTIHIIG----VQSENV  213 (333)
T ss_pred             HhhcC----CCCEEEEEeChhHHHHHHHHHHHHh------CCCCEEEE----EEECCC
Confidence            99963    3799999999999999997777542      24678884    445554

>PRK08197 threonine synthase; Validated

Probab=100.00  E-value=2.9e-35  Score=294.58  Aligned_cols=190  Identities=20%  Similarity=0.231  Sum_probs=154.5

Q ss_pred             CCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEE
Q psy11239         13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII   92 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~i   92 (410)
                      .++|||+++++|++.+|..+||+|+|++|||||||||.+...+..+.+.+...+++ +|+||||+|+|++|+.+|++|+|
T Consensus        77 eG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v  155 (394)
T PRK08197         77 EGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKHLAM-PTNGNAGAAWAAYAARAGIRATI  155 (394)
T ss_pred             cCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEE
Confidence            35799999999998885569999999999999999999887777777777665555 59999999999999999999999


Q ss_pred             EeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHHH
Q psy11239         93 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  171 (410)
Q Consensus        93 v~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~  171 (410)
                      |||++++   +.|+.+|+.|||+|+.++ ++++++.+.+.+.+++.   .+|+.      ++|+|| .++|++|+++||+
T Consensus       156 ~vp~~~~---~~k~~~~~~~GA~Vi~v~-~~~~~~~~~a~~~~~~~---g~~~~------~~~~np~~ieG~~t~a~Ei~  222 (394)
T PRK08197        156 FMPADAP---EITRLECALAGAELYLVD-GLISDAGKIVAEAVAEY---GWFDV------STLKEPYRIEGKKTMGLELA  222 (394)
T ss_pred             EEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc---Ccccc------cCCCCccchhcHHHHHHHHH
Confidence            9999887   589999999999999998 78888888888877653   23433      333333 4689999999999


Q ss_pred             HhhhhcCCCccEEEEecCCCCceeeccccccccccccccc-cCceeEE
Q psy11239        172 QQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNIL-KGSKIFL  218 (410)
Q Consensus       172 ~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~-~~~~v~~  218 (410)
                      +|+.  +..||+||+|+|+||+++|+..+|.++..+.-.. +..+|+.
T Consensus       223 eQl~--~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~  268 (394)
T PRK08197        223 EQLG--WRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVA  268 (394)
T ss_pred             HHcC--CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEE
Confidence            9964  3359999999999999999999987654322110 2456664

>TIGR01138 cysM cysteine synthase B

Probab=100.00  E-value=8.5e-36  Score=286.64  Aligned_cols=176  Identities=16%  Similarity=0.146  Sum_probs=146.5

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++|+... +.+||+|+|++|||||||||.+...+..+.+.+.   +..|+++|+||||+|+|++|+.+|+
T Consensus         5 ~ig~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~   83 (290)
T TIGR01138         5 TVGNTPLVRLQRMGPEN-GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGY   83 (290)
T ss_pred             hCCCCceEEccccccCC-CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCC
Confidence            35799999999998876 6899999999999999999998877777777665   3567778999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccchh
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQSI  165 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~t  165 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++.. +++++.+.+.+++++.+  .+       +.+||+++.  ..||+|
T Consensus        84 ~~~i~~p~~~~---~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~--~~-------~~~~~~~~~~~~~~~~t  151 (290)
T TIGR01138        84 RMKLLMPDNMS---QERKAAMRAYGAELILVTKEEGMEGARDLALELANRGE--GK-------LLDQFNNPDNPYAHYTS  151 (290)
T ss_pred             eEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC--CC-------CCCccCCcccHHHHhHh
Confidence            99999999887   58999999999999999843 47788778777776541  12       356776653  246899


Q ss_pred             HHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      +++||++|+.  + .+|+||+|+||||+++|+.+.|.+
T Consensus       152 ~~~Ei~~q~~--~-~~d~iv~~vG~Gg~~~Gv~~~lk~  186 (290)
T TIGR01138       152 TGPEIWQQTG--G-RITHFVSSMGTTGTIMGVSRFLKE  186 (290)
T ss_pred             HHHHHHHHcC--C-CCCEEEECCCchHHHHHHHHHHHH
Confidence            9999999963  2 489999999999999999777654

Alternate name: O-acetylserine (thiol)-lyase

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=100.00  E-value=5.2e-36  Score=306.18  Aligned_cols=188  Identities=26%  Similarity=0.352  Sum_probs=164.0

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHH-HHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA-KFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a-~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+ .+.+.+++| ++|+||||+++|++|+++|++|+|
T Consensus        16 ~~TPL~~~~~Ls~~~-g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV-~aSaGNha~~vA~aa~~~Gi~~~I   93 (499)
T TIGR01124        16 QETPLQKAAKLSERL-GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVI-AASAGNHAQGVAFSAARLGLKALI   93 (499)
T ss_pred             CCCCeeehHHHHHHh-CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEE-EECCCHHHHHHHHHHHHcCCCEEE
Confidence            489999999999887 68999999999999999999999998765 455555655 499999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+.++.   .|++.++.+||+|+.++ ++++++...+.++.++.  +.+|+       +||++. +++|++|+|.||+
T Consensus        94 vmP~~tp~---~Kv~~~r~~GA~Vvl~g-~~~d~a~~~a~~la~~~--g~~~i-------~p~~~~~~i~G~gtig~EI~  160 (499)
T TIGR01124        94 VMPETTPD---IKVDAVRGFGGEVVLHG-ANFDDAKAKAIELSQEK--GLTFI-------HPFDDPLVIAGQGTLALEIL  160 (499)
T ss_pred             EECCCCCH---HHHHHHHhCCCEEEEeC-cCHHHHHHHHHHHHHhc--CCEee-------CCCCChHHHHhhHHHHHHHH
Confidence            99986554   78999999999999984 44999999999988775  56676       778554 7899999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +|++   ..+|+||+|+|||||++|++.++++.  ++|||||||++++..
T Consensus       161 ~q~~---~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~  207 (499)
T TIGR01124       161 RQVA---NPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCM  207 (499)
T ss_pred             HhCC---CCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence            9995   36999999999999999999999864  899999999998744

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PLN02970 serine racemase

Probab=100.00  E-value=2.2e-36  Score=295.68  Aligned_cols=183  Identities=18%  Similarity=0.191  Sum_probs=150.9

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+....|+++|+||||+|+|++|+.+|+||+
T Consensus        24 ~i~~TPL~~~~~l~~~~-g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~  102 (328)
T PLN02970         24 FIHRTPVLTSSSLDALA-GRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAY  102 (328)
T ss_pred             cCCCCCeeechhhHHhh-CCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEE
Confidence            55799999999999887 57999999999999999999887666555433333345557999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+.+|+.|||+|+.++ ++++++.+.+.+++++.  +.       .+.+||+++ .+.|++|+++||
T Consensus       103 ivvp~~~~---~~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~la~~~--g~-------~~~~~~~n~~~~~g~~t~g~Ei  169 (328)
T PLN02970        103 IVVPKNAP---ACKVDAVIRYGGIITWCE-PTVESREAVAARVQQET--GA-------VLIHPYNDGRVISGQGTIALEF  169 (328)
T ss_pred             EEECCCCC---HHHHHHHHhcCCEEEEeC-CCHHHHHHHHHHHHHhc--CC-------EEeCCCCCcchhhehHHHHHHH
Confidence            99999988   589999999999999998 67888888888877642  22       235777766 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|++    .||+||+|+|+||++.|+...|.+.      .+.++|+.
T Consensus       170 ~~ql~----~~D~vv~~vG~GG~~~Gi~~~lk~~------~~~~kvi~  207 (328)
T PLN02970        170 LEQVP----ELDVIIVPISGGGLISGIALAAKAI------KPSIKIIA  207 (328)
T ss_pred             HHhcc----CCCEEEEeeCchHHHHHHHHHHHhc------CCCCEEEE
Confidence            99974    4899999999999999997777542      24677774

>PRK07048 serine/threonine dehydratase; Validated

Probab=100.00  E-value=6.7e-36  Score=291.86  Aligned_cols=184  Identities=17%  Similarity=0.229  Sum_probs=156.6

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHH-cCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      .|||++++++.+.. +.+||+|+|++||+||||+|.+.+++..+.+ .+.+++ +++|+||||+|+|++|+.+|++|++|
T Consensus        24 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~~vv  101 (321)
T PRK07048         24 RTPVLTSRTADART-GAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGV-VTFSSGNHAQAIALSARLLGIPATIV  101 (321)
T ss_pred             CCCCccchhhHHhc-CCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcE-EEeCCCHHHHHHHHHHHHcCCCEEEE
Confidence            79999999988766 6899999999999999999999999887663 344554 56999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+   +.|+.+|+.+||+|+.++ ++++++...+.++.++.  +.+|+       +||++. ...|++|++.||++
T Consensus       102 vp~~~~---~~k~~~~~~~GAeV~~~~-~~~~~~~~~a~~l~~~~--g~~~~-------~~~~~~~~~~g~~t~~~EI~~  168 (321)
T PRK07048        102 MPQDAP---AAKVAATRGYGGEVVTYD-RYTEDREEIGRRLAEER--GLTLI-------PPYDHPHVIAGQGTAAKELFE  168 (321)
T ss_pred             ECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEE-------CCCCCcchhhccchHHHHHHh
Confidence            998654   378999999999999996 45777777777776664  45555       555322 57899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS  400 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~  400 (410)
                      |++    .||+||+|+|||||++|++.++++.  ++|||||||++++
T Consensus       169 q~~----~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~  211 (321)
T PRK07048        169 EVG----PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGN  211 (321)
T ss_pred             hcC----CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCCh
Confidence            994    6999999999999999999999864  8999999999986

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=100.00  E-value=9.7e-36  Score=289.62  Aligned_cols=187  Identities=19%  Similarity=0.266  Sum_probs=158.3

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|.... +.+||+|+|++|||||||+|++.+++..+. +.+.+++ +++|+||||+++|++|+++|++|+|
T Consensus        18 ~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~~v   95 (317)
T TIGR02991        18 EETPLVESPSLSELC-GVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGV-VAASTGNHGRALAYAAAEEGVRATI   95 (317)
T ss_pred             CCCCceechhhHHhh-CCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCeE-EEECCCHHHHHHHHHHHHhCCCEEE
Confidence            389999999988776 679999999999999999999999987654 3444554 5699999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+..++   .|++.++.+||+|+.++ ++++++.+.+.+..++.  +.+|+       +||++. ..+|++|++.||+
T Consensus        96 ~~p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~~~~-------~~~~n~~~~~g~~t~a~Ei~  162 (317)
T TIGR02991        96 CMSELVPQ---NKVDEIRRLGAEVRIVG-RSQDDAQEEVERLVADR--GLTML-------PPFDHPDIVAGQGTLGLEVV  162 (317)
T ss_pred             EcCCCCCH---HHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEee-------CCCCChHHHhhHHHHHHHHH
Confidence            99986543   78999999999999996 45888888888887765  45555       555322 5789999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +|++    .+|+||+|+|+||+++|++.+|++.  ++|||||||++++..
T Consensus       163 ~q~~----~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~  208 (317)
T TIGR02991       163 EQMP----DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAM  208 (317)
T ss_pred             HhCC----CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHH
Confidence            9995    5899999999999999999999874  899999999876543

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PLN00011 cysteine synthase

Probab=100.00  E-value=2e-35  Score=288.33  Aligned_cols=191  Identities=19%  Similarity=0.131  Sum_probs=158.4

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC-----CceEEecCchHHHHHHHHHHHHcCCc
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-----KRIICETGAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~-----~~~v~~~ssGN~g~a~A~~a~~~G~~  272 (410)
                      .|||++++++.... +.+||+|+|++|||||||+|++.+++..+.+.|.     +++ +++|+||||+++|++|+.+|++
T Consensus        17 ~TPl~~l~~l~~~~-g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~v-v~aSsGN~g~alA~~a~~~G~~   94 (323)
T PLN00011         17 NTPMVYLNNIVDGC-VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTL-IEATAGNTGIGLACIGAARGYK   94 (323)
T ss_pred             CCceEEccccCCCC-CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEE-EEeCCChHHHHHHHHHHHcCCe
Confidence            89999988887554 4799999999999999999999999999988873     444 5699999999999999999999


Q ss_pred             EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHH
Q psy11239        273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY  351 (410)
Q Consensus       273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~  351 (410)
                      |+||||+..+   +.|+++++.+||+|+.++... .++.++++.++.++.  ..+|+++++.|  +.  +...||.|+|.
T Consensus        95 ~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~--~~~~~~~~~~n--~~--n~~~~~~t~~~  165 (323)
T PLN00011         95 VILVMPSTMS---LERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKT--PGGYIPQQFEN--PA--NPEIHYRTTGP  165 (323)
T ss_pred             EEEEeCCCCC---HHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhC--CCeEEeccccC--Cc--cHHHHHHHHHH
Confidence            9999998654   388999999999999987432 456677777776654  23555544442  21  23458999999


Q ss_pred             HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      ||++|+.   ..||+||+|+|||||++|++.++++.  ++|||||||++++.+
T Consensus       166 EI~~q~~---~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~  215 (323)
T PLN00011        166 EIWRDSA---GKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVL  215 (323)
T ss_pred             HHHHhcC---CCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCccc
Confidence            9999984   37999999999999999999999864  899999999999765

>PLN03013 cysteine synthase

Probab=100.00  E-value=2.6e-36  Score=299.46  Aligned_cols=186  Identities=16%  Similarity=0.078  Sum_probs=152.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ..++|||++++.+.+.. +.+||+|+|++|||||||||.+...+..+++.+.   + .+|+++||||||+|+|++|+.+|
T Consensus       120 ~iG~TPLv~l~~l~~~~-g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G  198 (429)
T PLN03013        120 LIGKTPMVYLNSIAKGC-VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRG  198 (429)
T ss_pred             cCCCCCeEECccccccc-CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcC
Confidence            45799999999988765 6799999999999999999988777777766653   3 45777899999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc-c-ccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV-R-DFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~g~~  164 (410)
                      +||+||||+.++   ++|+++|+.|||+|+.++.. .++++++.+.+++++.+  .+|      +.+||+|+. + .||+
T Consensus       199 ~~~~VvvP~~~s---~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~--g~~------~~~qy~Np~n~~ah~~  267 (429)
T PLN03013        199 YRLILTMPASMS---MERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTP--DAY------MLQQFDNPANPKIHYE  267 (429)
T ss_pred             CCEEEEECCCCc---HHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcC--CeE------eCCCCCCHHHHHHHHH
Confidence            999999999988   58999999999999999743 26778888888876541  122      357777663 3 5999


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |+|+||++|+.   ..||+||+|+||||+++|+...|.      +..|+++|+.
T Consensus       268 ttg~EI~eq~~---~~~D~vV~~vGtGGtisGiar~lK------e~~P~vkVig  312 (429)
T PLN03013        268 TTGPEIWDDTK---GKVDIFVAGIGTGGTITGVGRFIK------EKNPKTQVIG  312 (429)
T ss_pred             HHHHHHHHhcC---CCCCEEEEeCCccHHHHHHHHHHH------hhCCCCEEEE
Confidence            99999999953   258999999999999999966554      3445778884

>PRK07591 threonine synthase; Validated

Probab=100.00  E-value=4.6e-35  Score=294.84  Aligned_cols=193  Identities=17%  Similarity=0.181  Sum_probs=156.8

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      -.++|||+++++|++.+|..+||+|+|++|||||||||.+...+..+.+.+.+.+++ +|+||||+|+|++|+++|++|+
T Consensus        86 ~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~~vv~-aSsGN~g~alA~~aa~~Gl~~~  164 (421)
T PRK07591         86 GPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFTTVAC-ASTGNLANSVAAHAARAGLDSC  164 (421)
T ss_pred             CCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCCEEEE-eCCCHHHHHHHHHHHHcCCCEE
Confidence            346799999999999885579999999999999999998877777777777766655 6999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIH  171 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI~  171 (410)
                      ||||+.++   +.|+.+|+.|||+|+.++ ++++++.+.+.+.+++.+  .+|+.+.  +.+||   .++|++|+++||+
T Consensus       165 I~vP~~~~---~~k~~~~~~~GA~Vi~v~-g~~d~a~~~a~~~~~~~~--~~~~~n~--~~~p~---~ieG~~Tia~Ei~  233 (421)
T PRK07591        165 VFIPADLE---AGKIVGTLVYGPTLVAVD-GNYDDVNRLCSELANEHE--GWGFVNI--NLRPY---YAEGSKTLGYEVA  233 (421)
T ss_pred             EEEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhcC--CEEEecC--CCCcc---cccchHHHHHHHH
Confidence            99999877   589999999999999998 789999888888776541  2343332  24555   4689999999999


Q ss_pred             HhhhhcCCCccEEEEecCCCCceeecccccccccccccc-ccCceeEE
Q psy11239        172 QQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNI-LKGSKIFL  218 (410)
Q Consensus       172 ~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~-~~~~~v~~  218 (410)
                      +|++  +..||+||+|+|+||+++|+..+|.++..+... .+..+|+.
T Consensus       234 eQl~--~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~  279 (421)
T PRK07591        234 EQLG--WRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFG  279 (421)
T ss_pred             HHcC--CCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEE
Confidence            9964  335999999999999999999998765433211 12356663

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=100.00  E-value=1.3e-35  Score=294.66  Aligned_cols=193  Identities=15%  Similarity=0.126  Sum_probs=158.6

Q ss_pred             cccccccccccccccc-------CceeEEeecCCCC-CchhhHHHHHHHHHH-----HHHcCC-----------------
Q psy11239        197 RPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK-----------------  246 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~-------~~~v~~K~e~~~p-tgS~K~R~a~~~~~~-----a~~~g~-----------------  246 (410)
                      ..|||++++.|+...+       +.+||+|+|.+|| |||||+|++++++..     +++.|.                 
T Consensus        51 ~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~  130 (404)
T cd06447          51 IESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRK  130 (404)
T ss_pred             cCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhh
Confidence            4899999998887652       3799999999999 999999999998863     444444                 


Q ss_pred             ---CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCC
Q psy11239        247 ---KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNIL  323 (410)
Q Consensus       247 ---~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~  323 (410)
                         ...|+++|+||||+++|++|+.+|++|+||||++.++   .|++.|+.+||+|+.++ ++++++.+.+.+++++.  
T Consensus       131 ~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~---~K~~~ira~GAeVv~v~-~~~~~a~~~a~~la~~~--  204 (404)
T cd06447         131 LFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQ---WKKDKLRSKGVTVVEYE-TDYSKAVEEGRKQAAAD--  204 (404)
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHHC--
Confidence               1246679999999999999999999999999986554   88999999999999995 55999999998888765  


Q ss_pred             CceEEecCCCCCCCChh-HHHhhhhhHHHHHHHhhhhcCC-----CCCEEEEccCchhHHHHHHHHHhcC---CCeEEEE
Q psy11239        324 NSHYLIGTASGPHPYPT-IVRDFQSIIGYEIHQQLNFNFY-----NKKYILACVGGGSNALGIFYTFINS---NFKLVAI  394 (410)
Q Consensus       324 ~~~~~~~~~~~~~~~~~-~~~~g~~t~g~Ei~~q~~~~~~-----~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigV  394 (410)
                      +..|++      ++|++ ++.+||+|+|.||++|++..+.     .||+||+|+|+||+++|++++|++.   +++||+|
T Consensus       205 ~~~~~v------~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigV  278 (404)
T cd06447         205 PMCYFV------DDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFA  278 (404)
T ss_pred             CCeEeC------CCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEE
Confidence            233443      44422 3789999999999999963222     3668999999999999999999863   7999999


Q ss_pred             ccCCCCc
Q psy11239        395 ESGGISK  401 (410)
Q Consensus       395 e~~g~~~  401 (410)
                      ||++++.
T Consensus       279 eP~~ap~  285 (404)
T cd06447         279 EPTHSPC  285 (404)
T ss_pred             ccCCChH
Confidence            9999863

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK12483 threonine dehydratase; Reviewed

Probab=100.00  E-value=2.2e-36  Score=308.75  Aligned_cols=173  Identities=24%  Similarity=0.287  Sum_probs=148.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHH-HHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLL-AKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~-~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+.. ..+.+.+++|+ +|+||||+++|++|+.+|+||
T Consensus        34 ~v~~TPL~~~~~Ls~~~-g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~-aSaGNha~gvA~aA~~lGi~~  111 (521)
T PRK12483         34 VARETPLQRAPNLSARL-GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVIT-ASAGNHAQGVALAAARLGVKA  111 (521)
T ss_pred             hcCCCCeeEchhhhHhh-CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEE-ECCCHHHHHHHHHHHHhCCCE
Confidence            46799999999999887 6899999999999999999988655443 22344455555 699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.+|   +.|+..++.|||+|+.++ ++++++++.+.+++++.  +       ..+.|||+++ .++||+|+|.|
T Consensus       112 ~IvmP~~tp---~~Kv~~~r~~GAeVil~g-~~~d~a~~~A~~la~e~--g-------~~~v~pfdd~~viaGqgTig~E  178 (521)
T PRK12483        112 VIVMPRTTP---QLKVDGVRAHGGEVVLHG-ESFPDALAHALKLAEEE--G-------LTFVPPFDDPDVIAGQGTVAME  178 (521)
T ss_pred             EEEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--C-------CeeeCCCCChHHHHHHHHHHHH
Confidence            999999998   489999999999999997 68999999999988765  2       2346899888 58999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIY  202 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~  202 (410)
                      |++|++  + .||+||+|+|+||+++|+.+.+.
T Consensus       179 I~eQ~~--~-~~D~VvvpvGgGGliaGia~~~K  208 (521)
T PRK12483        179 ILRQHP--G-PLDAIFVPVGGGGLIAGIAAYVK  208 (521)
T ss_pred             HHHHhC--C-CCCEEEEecCccHHHHHHHHHHH
Confidence            999964  2 48999999999999999977654

>PRK08198 threonine dehydratase; Provisional

Probab=100.00  E-value=2.4e-36  Score=303.91  Aligned_cols=174  Identities=25%  Similarity=0.335  Sum_probs=148.8

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      .+.+|||+++++|++.+ +.+||+|+|++|||||||||.+...+....+.+....|+++|+||||+++|++|+.+|+||+
T Consensus        19 ~i~~TPl~~~~~ls~~~-g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~   97 (404)
T PRK08198         19 VVRRTPLEYSRTLSELT-GAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKAT   97 (404)
T ss_pred             cCCCCCceehhhHHHHh-CCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            56899999999999887 68999999999999999999887766555544444456667999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++|+.|||+|+.++ ++++++++.+.+++++.  +.       .+.+||+++ .+.||+|+|+||
T Consensus        98 iv~p~~~~---~~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~~~~~~--g~-------~~~~~~~~~~~~~g~~t~a~EI  164 (404)
T PRK08198         98 IVMPETAP---LSKVKATRSYGAEVVLHG-DVYDEALAKAQELAEET--GA-------TFVHPFDDPDVIAGQGTIGLEI  164 (404)
T ss_pred             EEECCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EecCCCCCccHHHHHHHHHHHH
Confidence            99999988   589999999999999997 67999999998887764  22       336788777 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      ++|++    .+|+||+|+||||+++|+...|..
T Consensus       165 ~~q~~----~~d~vv~~vG~GG~~~Gi~~~~k~  193 (404)
T PRK08198        165 LEDLP----DVDTVVVPIGGGGLISGVATAVKA  193 (404)
T ss_pred             HHhCC----CCCEEEEEeCHhHHHHHHHHHHHH
Confidence            99964    489999999999999999777654

>PRK06352 threonine synthase; Validated

Probab=100.00  E-value=1e-35  Score=293.14  Aligned_cols=187  Identities=22%  Similarity=0.253  Sum_probs=159.5

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|.... +.+||+|+|++|||||||+|++.+++..+.++|.+++ +++|+||||+|+|++|+.+|++|+|||
T Consensus        28 ~TPL~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~v-V~aSsGN~G~AlA~~aa~~G~~~~ivv  105 (351)
T PRK06352         28 NTPLIPLPNLSKEL-GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEAV-ICASTGNTSAAAAAYATRAGLKAYIVI  105 (351)
T ss_pred             CCCeeEcHhhHHHh-CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCCEE-EEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence            89999999998776 5799999999999999999999999999999888765 559999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+...+  +.|+.+|+++||+|+.++ ++++++.+.+.+..++.  + +|..+ ..  ||+   ...|++|++.||++|+
T Consensus       106 p~~~~~--~~k~~~~~a~GA~V~~~~-~~~~~~~~~a~~~~~~~--~-~~~~~-~~--n~~---~~~G~~t~~~EI~~Q~  173 (351)
T PRK06352        106 PEGKVA--LGKLAQAVMYGADIISIQ-GNFDEALKSVRELAETE--A-VTLVN-SV--NPY---RLEGQKTAAFEICEQL  173 (351)
T ss_pred             eCCCCc--HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-ccccc-CC--Ccc---ceeeHHHHHHHHHHHc
Confidence            985433  478889999999999996 55888888888877664  2 33332 22  333   4679999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--C-----CeEEEEccCCCCc
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--N-----FKLVAIESGGISK  401 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~-----~~vigVe~~g~~~  401 (410)
                      .   ..||+||+|+|+||+++|++++|++.  +     +|||+|||++++.
T Consensus       174 ~---~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~  221 (351)
T PRK06352        174 G---SAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAA  221 (351)
T ss_pred             C---CCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCH
Confidence            4   57999999999999999999999864  3     8999999999863

>PRK06381 threonine synthase; Validated

Probab=100.00  E-value=1.9e-35  Score=288.54  Aligned_cols=189  Identities=26%  Similarity=0.293  Sum_probs=161.0

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|....+..+||+|+|++||+||||+|++.+++..++++|.+++| ++|+||||+|+|++|+.+|++|+|||
T Consensus        15 ~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~lv-~aSsGN~g~alA~~aa~~G~~~~ivv   93 (319)
T PRK06381         15 GTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGIT-VGTCGNYGASIAYFARLYGLKAVIFI   93 (319)
T ss_pred             CCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCCEEE-EeCCcHHHHHHHHHHHHcCCcEEEEE
Confidence            79999999998777447999999999999999999999999999999987765 49999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+..+   +.++++|+.+||+|+.++ ++++++.+.+.+..++.  + +|+++++.. ++  .....|++|++.||++|+
T Consensus        94 p~~~~---~~~~~~l~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~-~~~~~~~~~-n~--~~~~~G~~t~a~Ei~~ql  163 (319)
T PRK06381         94 PRSYS---NSRVKEMEKYGAEIIYVD-GKYEEAVERSRKFAKEN--G-IYDANPGSV-NS--VVDIEAYSAIAYEIYEAL  163 (319)
T ss_pred             CCCCC---HHHHHHHHHcCCEEEEcC-CCHHHHHHHHHHHHHHc--C-cEecCCCCC-Cc--chHhhhHHHHHHHHHHHh
Confidence            98644   378899999999999996 45888888888887764  3 455433221 11  124679999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhc--------CCCeEEEEccCCCC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFIN--------SNFKLVAIESGGIS  400 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--------~~~~vigVe~~g~~  400 (410)
                      +   ..||+||+|+||||+++|++++|++        +.+|||+|||.+++
T Consensus       164 ~---~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~  211 (319)
T PRK06381        164 G---DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGN  211 (319)
T ss_pred             C---CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCC
Confidence            5   4699999999999999999999985        47999999999875

>PRK10717 cysteine synthase A; Provisional

Probab=100.00  E-value=2.9e-35  Score=288.47  Aligned_cols=191  Identities=20%  Similarity=0.178  Sum_probs=154.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||++++++++.. +.+||+|+|++||+||||+|++.+++..+.+.+.   +..|+++|+||||+|+|++|+++|++|+
T Consensus        13 ~TPL~~~~~l~~~~-g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~   91 (330)
T PRK10717         13 NTPLIRLNRASEAT-GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTV   91 (330)
T ss_pred             CCceEEccccCCCC-CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEE
Confidence            79999999998877 6899999999999999999999999999888775   2446669999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCCH-------HHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhh
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNL-------KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDF  345 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g  345 (410)
                      ||||+..++   .|+++++.+||+|+.++...+       +.+.+.+.+..++. +..+|++      +||++  ++..|
T Consensus        92 vv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~-~~~~~~~------~~~~~~~~~~~g  161 (330)
T PRK10717         92 IVMPETQSQ---EKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASE-PNGAIWA------NQFDNPANREAH  161 (330)
T ss_pred             EEeCCCCCH---HHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhC-CCCeEec------CCCCChhhHHHH
Confidence            999986543   789999999999999974312       22233333333322 1234554      44422  25689


Q ss_pred             hhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        346 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       346 ~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      |+|++.||++|++   ..+|+||+|+||||+++|++.+|++.  ++|||+|||++++.+
T Consensus       162 ~~t~a~Ei~~ql~---~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~  217 (330)
T PRK10717        162 YETTGPEIWEQTD---GKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALY  217 (330)
T ss_pred             HHhHHHHHHHhcC---CCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccc
Confidence            9999999999995   46899999999999999999999864  899999999998655

>PRK09224 threonine dehydratase; Reviewed

Probab=100.00  E-value=1.3e-35  Score=304.46  Aligned_cols=188  Identities=24%  Similarity=0.319  Sum_probs=163.3

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|+... +.+||+|+|++||+||||+|+|.+.+.... +.+.+++| ++|+||||+++|++|+++|++|+|
T Consensus        19 ~~TPL~~~~~Ls~~~-g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV-~aSaGNha~avA~aa~~lGi~~~I   96 (504)
T PRK09224         19 QETPLEKAPKLSARL-GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVI-TASAGNHAQGVALSAARLGIKAVI   96 (504)
T ss_pred             CCCCceehhHhHHHh-CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEE-EECcCHHHHHHHHHHHHcCCCEEE
Confidence            489999999998877 689999999999999999999999887554 44455555 599999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+.++.   .|++.++.+||+|+.++ ++++++.+++.+..++.  +.+|+       +||++. +++|++|+|.||+
T Consensus        97 vmP~~tp~---~K~~~~r~~GA~Vi~~g-~~~~~a~~~a~~l~~~~--g~~~v-------~~f~~~~~i~G~gTi~~EI~  163 (504)
T PRK09224         97 VMPVTTPD---IKVDAVRAFGGEVVLHG-DSFDEAYAHAIELAEEE--GLTFI-------HPFDDPDVIAGQGTIAMEIL  163 (504)
T ss_pred             EECCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEe-------CCCCCcHHHHhHHHHHHHHH
Confidence            99986554   78899999999999985 45999999999888775  56666       777554 7889999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +|++   ..||+||+|+||||+++|++.+++..  ++|||||||++++..
T Consensus       164 ~q~~---~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~  210 (504)
T PRK09224        164 QQHP---HPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACL  210 (504)
T ss_pred             Hhcc---CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence            9995   35999999999999999999999864  899999999988754

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=100.00  E-value=3.7e-35  Score=283.04  Aligned_cols=192  Identities=21%  Similarity=0.192  Sum_probs=159.1

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++|.+.. +.+||+|+|+.||+||||+|++.+.+..+.+.+.   +..|+++|+||||+|+|++|+++|++|+
T Consensus         2 ~TPl~~~~~l~~~~-g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   80 (291)
T cd01561           2 NTPLVRLNRLSPGT-GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI   80 (291)
T ss_pred             CCCEEEccccCCCC-CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence            69999999998776 6899999999999999999999999999888776   2445669999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY  351 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~  351 (410)
                      ||||+..+   +.|+++++.+||+|+.++...   ++++.+.+.++.++. + .+|+++++.  +|+  ++..|++|++.
T Consensus        81 i~vp~~~~---~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~--~p~--~~~g~~~t~~~  151 (291)
T cd01561          81 IVMPETMS---EEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAET-P-NAFWLNQFE--NPA--NPEAHYETTAP  151 (291)
T ss_pred             EEECCCCC---HHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhC-C-CcEEecCCC--Cch--HHHHHHHHHHH
Confidence            99998644   388999999999999996431   378888888776654 2 345543332  222  23444559999


Q ss_pred             HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      ||++|++   ..||+||+|+|+||+++|++.+|++.  +++||+|||++++.+
T Consensus       152 Ei~~ql~---~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~  201 (291)
T cd01561         152 EIWEQLD---GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLF  201 (291)
T ss_pred             HHHHHcC---CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCccc
Confidence            9999995   37999999999999999999999875  899999999999876

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>PRK06381 threonine synthase; Validated

Probab=100.00  E-value=5.2e-36  Score=292.54  Aligned_cols=192  Identities=24%  Similarity=0.227  Sum_probs=157.4

Q ss_pred             CCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCc
Q psy11239         10 PKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLE   89 (410)
Q Consensus        10 ~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~   89 (410)
                      ...+++|||+++++|++.+|..+||+|+|++|||||||||.+...+..+++.+...+ +++|+||||+|+|++|+.+|++
T Consensus        10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~l-v~aSsGN~g~alA~~aa~~G~~   88 (319)
T PRK06381         10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGI-TVGTCGNYGASIAYFARLYGLK   88 (319)
T ss_pred             cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCCEE-EEeCCcHHHHHHHHHHHHcCCc
Confidence            346789999999999988855799999999999999999998888778888776555 4569999999999999999999


Q ss_pred             EEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccc-cc--ccccchhH
Q psy11239         90 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP-TI--VRDFQSII  166 (410)
Q Consensus        90 ~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~--~~~g~~ti  166 (410)
                      |+||||..++   +.|+++|+.|||+|+.++ ++++++++.+.+++++.   .+|+      .+||+ |+  .+.||+|+
T Consensus        89 ~~ivvp~~~~---~~~~~~l~~~GA~V~~~~-~~~~~~~~~a~~~~~~~---~~~~------~~~~~~n~~~~~~G~~t~  155 (319)
T PRK06381         89 AVIFIPRSYS---NSRVKEMEKYGAEIIYVD-GKYEEAVERSRKFAKEN---GIYD------ANPGSVNSVVDIEAYSAI  155 (319)
T ss_pred             EEEEECCCCC---HHHHHHHHHcCCEEEEcC-CCHHHHHHHHHHHHHHc---CcEe------cCCCCCCcchHhhhHHHH
Confidence            9999999877   489999999999999998 67888888888887653   2332      34553 33  37899999


Q ss_pred             HHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        167 GYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       167 ~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++||++|++   ..||+||+|+|+||+++|+..+|.+...+....+.++|+.
T Consensus       156 a~Ei~~ql~---~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vig  204 (319)
T PRK06381        156 AYEIYEALG---DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIG  204 (319)
T ss_pred             HHHHHHHhC---CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEE
Confidence            999999974   3599999999999999999888876543322223466664

>PRK06382 threonine dehydratase; Provisional

Probab=100.00  E-value=3e-36  Score=302.72  Aligned_cols=182  Identities=21%  Similarity=0.215  Sum_probs=151.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc-CCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK-KKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~-~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||++...+....+.+ .+++ +++||||||+|+|++|+.+|++|
T Consensus        22 ~i~~TPl~~~~~ls~~~-g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~gv-v~aSsGN~g~a~A~aa~~~G~~~   99 (406)
T PRK06382         22 YLNRTPLIHSTTFGDEY-GGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGV-ITASAGNHAQGVAYAASINGIDA   99 (406)
T ss_pred             cCCCCCeeEhhhhHHHh-CCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCeE-EEECCCHHHHHHHHHHHHcCCCE
Confidence            56899999999999887 579999999999999999998866654443333 2344 45699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.++   +.|++.++.|||+|+.++ ++++++.+.+.+++++.  +.       .+.+||+++ .++||+|+++|
T Consensus       100 ~ivmp~~~~---~~k~~~~~~~GA~Vv~~~-~~~~~a~~~a~~la~~~--~~-------~~v~~~~~~~~i~g~~t~~~E  166 (406)
T PRK06382        100 KIVMPEYTI---PQKVNAVEAYGAHVILTG-RDYDEAHRYADKIAMDE--NR-------TFIEAFNDRWVISGQGTIGLE  166 (406)
T ss_pred             EEEEcCCCH---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EecCccCChHHHHHHHHHHHH
Confidence            999999987   489999999999999987 67999999888887754  22       346888876 57999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++|++    .||+||+|+|+||+++|+...+...      .+.++|+.
T Consensus       167 i~eq~~----~~d~vvvpvG~GG~~~Gv~~~~k~~------~p~~~vig  205 (406)
T PRK06382        167 IMEDLP----DLDQIIVPVGGGGLISGIALAAKHI------NPNVKIIG  205 (406)
T ss_pred             HHHhcC----CCCEEEEeeChHHHHHHHHHHHHHh------CCCCEEEE
Confidence            999964    4899999999999999997766432      24677774

>PRK06815 hypothetical protein; Provisional

Probab=100.00  E-value=2e-35  Score=287.75  Aligned_cols=187  Identities=24%  Similarity=0.318  Sum_probs=158.1

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHH-cCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      .+|||+++++|.+.. +.+||+|+|++|||||||+|.+.+++....+ .+.+++ +++|+||||+++|++|+++|++|+|
T Consensus        19 ~~TPLv~~~~l~~~~-g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~~i   96 (317)
T PRK06815         19 RVTPLEHSPLLSQHT-GCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGV-ITASSGNHGQGVALAAKLAGIPVTV   96 (317)
T ss_pred             CCCCccccHhHHHhh-CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCceE-EEECCChHHHHHHHHHHHhCCCEEE
Confidence            389999999988776 6899999999999999999999988875432 233445 5599999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+..+   +.++.+++.+||+|+.++ ++++++...+.+..++.  +.+|+       +||++. ...|++|++.||+
T Consensus        97 ~~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~~~-------~~~~~~~~~~g~~t~a~Ei~  163 (317)
T PRK06815         97 YAPEQAS---AIKLDAIRALGAEVRLYG-GDALNAELAARRAAEQQ--GKVYI-------SPYNDPQVIAGQGTIGMELV  163 (317)
T ss_pred             EECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEe-------cCCCChhhhcchhHHHHHHH
Confidence            9998654   378999999999999996 45888888887777664  45665       455322 5689999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +|++    .||+||+|+||||+++|++.++++.  ++|||||||++++.+
T Consensus       164 ~q~~----~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~  209 (317)
T PRK06815        164 EQQP----DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSL  209 (317)
T ss_pred             HhcC----CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcH
Confidence            9995    5999999999999999999999865  899999999998754

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=100.00  E-value=4.2e-35  Score=299.49  Aligned_cols=183  Identities=26%  Similarity=0.338  Sum_probs=153.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHH-HHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLL-AKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~-~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...+|||+++++|++.+ +.+||+|+|++||+||||+|++...+.. .++.+.+++|+ +|+||||+++|++|+++|++|
T Consensus        14 ~i~~TPL~~~~~Ls~~~-g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~-aSaGNha~~vA~aa~~~Gi~~   91 (499)
T TIGR01124        14 AAQETPLQKAAKLSERL-GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIA-ASAGNHAQGVAFSAARLGLKA   91 (499)
T ss_pred             ccCCCCeeehHHHHHHh-CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEE-ECCCHHHHHHHHHHHHcCCCE
Confidence            56899999999999987 6799999999999999999987655443 34444455555 699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.+|   +.|++.++.|||+|+.++ ++++++...+.+++++.  +.       .+.+||++| .++||+|+|.|
T Consensus        92 ~IvmP~~tp---~~Kv~~~r~~GA~Vvl~g-~~~d~a~~~a~~la~~~--g~-------~~i~p~~~~~~i~G~gtig~E  158 (499)
T TIGR01124        92 LIVMPETTP---DIKVDAVRGFGGEVVLHG-ANFDDAKAKAIELSQEK--GL-------TFIHPFDDPLVIAGQGTLALE  158 (499)
T ss_pred             EEEECCCCC---HHHHHHHHhCCCEEEEeC-cCHHHHHHHHHHHHHhc--CC-------EeeCCCCChHHHHhhHHHHHH
Confidence            999999998   489999999999999997 67999999998887764  22       347889887 58999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++|++   ..+|+||+|+||||+++|+.+.+..      ..+.++|+.
T Consensus       159 I~~q~~---~~~D~vvvpvGgGGliaGia~~lk~------~~p~~kVIg  198 (499)
T TIGR01124       159 ILRQVA---NPLDAVFVPVGGGGLAAGVAALIKQ------LMPEIKVIG  198 (499)
T ss_pred             HHHhCC---CCCCEEEEccCccHHHHHHHHHHHH------hCCCCEEEE
Confidence            999964   2589999999999999999776643      224677773

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=100.00  E-value=6.2e-36  Score=290.96  Aligned_cols=188  Identities=19%  Similarity=0.232  Sum_probs=152.6

Q ss_pred             hhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHH
Q psy11239          5 DLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSC   83 (410)
Q Consensus         5 ~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a   83 (410)
                      +.|.+  .+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+.... +.+.++ |+++|+||||+|+|++|
T Consensus        11 ~~i~~--~i~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~-vv~aSsGN~g~alA~~a   86 (317)
T TIGR02991        11 ARISG--RVEETPLVESPSLSELC-GVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAG-VVAASTGNHGRALAYAA   86 (317)
T ss_pred             HHHhC--cCCCCCceechhhHHhh-CCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCe-EEEECCCHHHHHHHHHH
Confidence            34444  56899999999999877 579999999999999999998776655433 333344 55579999999999999


Q ss_pred             HHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-cccc
Q psy11239         84 CLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDF  162 (410)
Q Consensus        84 ~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g  162 (410)
                      +.+|+||+||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.  +.       .+.+||+++ .++|
T Consensus        87 ~~~G~~~~v~~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~-------~~~~~~~n~~~~~g  153 (317)
T TIGR02991        87 AEEGVRATICMSELVP---QNKVDEIRRLGAEVRIVG-RSQDDAQEEVERLVADR--GL-------TMLPPFDHPDIVAG  153 (317)
T ss_pred             HHhCCCEEEEcCCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CC-------EeeCCCCChHHHhh
Confidence            9999999999999887   589999999999999998 67888888888877653  22       235777666 4799


Q ss_pred             chhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        163 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       163 ~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      |+|+++||++|+.    .+|+||+|+|+||+++|+...|.+.      .+.++|+.-
T Consensus       154 ~~t~a~Ei~~q~~----~~d~vvv~~G~Gg~~~Gi~~~~k~~------~p~~~vigv  200 (317)
T TIGR02991       154 QGTLGLEVVEQMP----DLATVLVPLSGGGLASGVAMAVKAA------RPDTRVIGV  200 (317)
T ss_pred             HHHHHHHHHHhCC----CCCEEEEEcChhHHHHHHHHHHHHh------CCCCEEEEE
Confidence            9999999999963    3799999999999999997776542      246788853

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=100.00  E-value=4.1e-36  Score=300.01  Aligned_cols=170  Identities=25%  Similarity=0.331  Sum_probs=147.4

Q ss_pred             CcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEec
Q psy11239         16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIG   95 (410)
Q Consensus        16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p   95 (410)
                      |||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+....|+++|+||||+++|++|+.+|+||+||||
T Consensus         1 TPl~~~~~ls~~~-g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p   79 (380)
T TIGR01127         1 TPLIYSTTLSDIT-GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMP   79 (380)
T ss_pred             CCceehHHHHHHh-CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            8999999999887 689999999999999999999887766666555544566679999999999999999999999999


Q ss_pred             cCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHHHHhh
Q psy11239         96 ENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQL  174 (410)
Q Consensus        96 ~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~q~  174 (410)
                      +.++   +.|+++|+.|||+|+.++ ++++++++.+.+++++.  +.       .+.+||+++ .++||+|+++||++|+
T Consensus        80 ~~~~---~~k~~~~~~~GA~V~~~~-~~~~~a~~~a~~~~~~~--~~-------~~~~~~~~~~~~~g~~t~~~Ei~~q~  146 (380)
T TIGR01127        80 ESAP---PSKVKATKSYGAEVILHG-DDYDEAYAFATSLAEEE--GR-------VFVHPFDDEFVMAGQGTIGLEIMEDI  146 (380)
T ss_pred             CCCc---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EecCCCCChhhhhhhHHHHHHHHHhC
Confidence            9988   589999999999999997 67999999998887764  22       236788776 5799999999999996


Q ss_pred             hhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        175 NFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       175 ~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      +    .||+||+|+||||+++|+.+.|..
T Consensus       147 ~----~~D~vv~~vG~Gg~~aGi~~~~k~  171 (380)
T TIGR01127       147 P----DVDTVIVPVGGGGLISGVASAAKQ  171 (380)
T ss_pred             C----CCCEEEEEeChHHHHHHHHHHHHH
Confidence            4    489999999999999999887754

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=100.00  E-value=4.2e-35  Score=293.16  Aligned_cols=201  Identities=29%  Similarity=0.484  Sum_probs=165.8

Q ss_pred             eeccccccccccccccccC-ceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        195 LGRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~-~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|.+|||+++++|.+.++. .+||+|+|++|||||||+|.+..++..+++.|.+++++++|+||||+|+|++|+.+|++|
T Consensus        65 ~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~~Gl~~  144 (419)
T TIGR01415        65 IGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGLEC  144 (419)
T ss_pred             cCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHcCCcE
Confidence            4568999999999887742 699999999999999999999999999999999999888899999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHH------------------HHHHHHHHHHccCCCceEEecCCCCC
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE------------------AMNEAIKDWSNNILNSHYLIGTASGP  335 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~------------------~~~~a~~~~~~~~~~~~~~~~~~~~~  335 (410)
                      +||||..++..++.++.+|+.+||+|+.++.. +++                  ++.++.+.++++ ++..|+.++..| 
T Consensus       145 ~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~-~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~-~~~~y~~~~~~n-  221 (419)
T TIGR01415       145 KVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE-FTEFGREVLKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLN-  221 (419)
T ss_pred             EEEEeCCCcccCHHHHHHHHHcCCEEEEECCc-hhhHHHHhhhcccccccchHHHHHHHHHHHHhC-CCCEEEeCCCCc-
Confidence            99999754443356789999999999998643 333                  356677776654 235677554432 


Q ss_pred             CCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc------CCCeEEEEccCCCCcCC
Q psy11239        336 HPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN------SNFKLVAIESGGISKKR  403 (410)
Q Consensus       336 ~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~------~~~~vigVe~~g~~~~~  403 (410)
                           .+..|+.++|.||++|++..|..||+||+|+|+||+++|++.+|.+      .++|||+|||++++.+.
T Consensus       222 -----~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~  290 (419)
T TIGR01415       222 -----HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLT  290 (419)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhh
Confidence                 2567999999999999975455799999999999999999977731      27999999999987553

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>PLN02356 phosphateglycerate kinase

Probab=100.00  E-value=4.7e-35  Score=290.44  Aligned_cols=193  Identities=22%  Similarity=0.159  Sum_probs=151.9

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcC---CCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g---~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++|.... +.+||+|+|++||+||||+|.+.+++..+.+.|   .+++|+|+||||||+++|++|+.+|++|+
T Consensus        53 ~TPLv~~~~l~~~~-g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~  131 (423)
T PLN02356         53 NTPLIRINSLSEAT-GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCH  131 (423)
T ss_pred             CCceEECccccccc-CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence            79999999988766 689999999999999999999999999888765   35678889999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeC-----CC-H-HHHH---HHHHHHHHcc-----------------------
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQY-----GN-L-KEAM---NEAIKDWSNN-----------------------  321 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~-----g~-~-~~~~---~~a~~~~~~~-----------------------  321 (410)
                      ||||+..++   .|++.|+.+||+|+.++.     ++ + ..+.   .++.+++++.                       
T Consensus       132 ivvP~~~s~---~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (423)
T PLN02356        132 VVIPDDVAI---EKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEK  208 (423)
T ss_pred             EEECCCCcH---HHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence            999986554   788999999999999853     22 2 1111   2233333221                       


Q ss_pred             --------CCCceEEecCCCCCCCChh--HHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CC
Q psy11239        322 --------ILNSHYLIGTASGPHPYPT--IVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NF  389 (410)
Q Consensus       322 --------~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~  389 (410)
                              ..+ .|++      |||++  +...|+..+|.||++|++   ..+|+||+|+|||||++|+++++|+.  ++
T Consensus       209 ~~~~~~~~~~~-~~~~------~q~~n~~n~~ahg~gTg~EI~eQl~---g~~D~vVv~vGtGGti~Gva~~lK~~~P~v  278 (423)
T PLN02356        209 ENSLFSSSCTG-GFFA------DQFENLANFRAHYEGTGPEIWEQTQ---GNLDAFVAAAGTGGTLAGVSRFLQEKNPNI  278 (423)
T ss_pred             cccccccCCCC-cEec------CccCCcchHHHHHhhHHHHHHHhcC---CCCCEEEeCCCchHHHHHHHHHHHHhCCCC
Confidence                    012 2333      55532  223444445999999995   47999999999999999999999975  99


Q ss_pred             eEEEEccCCCCcCCc
Q psy11239        390 KLVAIESGGISKKRT  404 (410)
Q Consensus       390 ~vigVe~~g~~~~~~  404 (410)
                      ||++|||.+|.++.+
T Consensus       279 kVigVep~~s~~~~~  293 (423)
T PLN02356        279 KCFLIDPPGSGLFNK  293 (423)
T ss_pred             EEEEEecCCCccccc
Confidence            999999999886643

>PRK07334 threonine dehydratase; Provisional

Probab=100.00  E-value=1.7e-35  Score=297.13  Aligned_cols=187  Identities=20%  Similarity=0.289  Sum_probs=160.0

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+. +.+.+++ +++|+||||+++|++|+++|++|+|
T Consensus        22 ~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~~i   99 (403)
T PRK07334         22 LRTPCVHSRTLSQIT-GAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGV-IAMSAGNHAQGVAYHAQRLGIPATI   99 (403)
T ss_pred             CCCCccchHHHHHhh-CCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCcE-EEECCcHHHHHHHHHHHHcCCCEEE
Confidence            389999999998777 679999999999999999999999988654 3334444 5699999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  354 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~  354 (410)
                      |||+..++   .|+++++.+||+|+.++ ++++++.+.+.++.++.  +.+|+       +||++. ..+|++|+|.||+
T Consensus       100 v~p~~~~~---~k~~~~~~~GA~v~~~~-~~~~~~~~~a~~l~~~~--~~~~~-------~~~~~~~~~~g~~t~~~Ei~  166 (403)
T PRK07334        100 VMPRFTPT---VKVERTRGFGAEVVLHG-ETLDEARAHARELAEEE--GLTFV-------HPYDDPAVIAGQGTVALEML  166 (403)
T ss_pred             EECCCCCH---HHHHHHHHcCCEEEEEC-cCHHHHHHHHHHHHHhc--CCEec-------CCCCCHHHHHhHHHHHHHHH
Confidence            99986554   78899999999999885 55899998888887765  45555       566322 6789999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +|++    .||+||+|+|+|||++|++++++..  ++|||||||++++.+
T Consensus       167 ~q~~----~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~  212 (403)
T PRK07334        167 EDAP----DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSM  212 (403)
T ss_pred             hcCC----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchH
Confidence            9994    6999999999999999999999864  899999999998764

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=100.00  E-value=9.2e-36  Score=295.69  Aligned_cols=189  Identities=15%  Similarity=0.089  Sum_probs=149.3

Q ss_pred             CCCCcCccccccccccC-------CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcC----------------
Q psy11239         13 GRPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK----------------   63 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~~~-------~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~----------------   63 (410)
                      ..+|||+++++|++.+|       +.+||+|+|++|| |||||||+++.++..     +++.+.                
T Consensus        50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~  129 (404)
T cd06447          50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR  129 (404)
T ss_pred             ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence            68999999999988763       3799999999999 999999987655432     333222                


Q ss_pred             ----CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcc
Q psy11239         64 ----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI  139 (410)
Q Consensus        64 ----~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~  139 (410)
                          ...|+++||||||+|+|++|+.+|++|+||||++++   +.|+++|+.|||+|+.++ ++++++++.+.+++++.+
T Consensus       130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~---~~K~~~ira~GAeVv~v~-~~~~~a~~~a~~la~~~~  205 (404)
T cd06447         130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAK---QWKKDKLRSKGVTVVEYE-TDYSKAVEEGRKQAAADP  205 (404)
T ss_pred             hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCc---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHHCC
Confidence                125666799999999999999999999999999988   599999999999999998 789999999988887641


Q ss_pred             cCCcccccccccCcccccc-ccccchhHHHHHHHhhhhcC-----CCccEEEEecCCCCceeeccccccccccccccccC
Q psy11239        140 LNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQLNFNF-----YNKKYILACVGGGSNALGRPTPIYYCKNISNILKG  213 (410)
Q Consensus       140 ~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~q~~~~~-----~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~  213 (410)
                        ..|      +.+||+++ .++||+|+|+||++|+...+     ..||+||+|+|+||+++|+...|.+..     .++
T Consensus       206 --~~~------~v~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~-----~p~  272 (404)
T cd06447         206 --MCY------FVDDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIF-----GDN  272 (404)
T ss_pred             --CeE------eCCCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhc-----CCC
Confidence              122      23455444 57999999999999975211     247799999999999999977664321     235


Q ss_pred             ceeEE
Q psy11239        214 SKIFL  218 (410)
Q Consensus       214 ~~v~~  218 (410)
                      ++|+.
T Consensus       273 ~kVig  277 (404)
T cd06447         273 VHCFF  277 (404)
T ss_pred             CEEEE
Confidence            67774

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK06110 hypothetical protein; Provisional

Probab=100.00  E-value=6.5e-36  Score=291.83  Aligned_cols=183  Identities=17%  Similarity=0.155  Sum_probs=150.4

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC-CceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~-~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      .+++|||+++++|++.+ +.+||+|+|++|||||||||++...+..+.+.+. ...|+++|+||||+++|++|+++|++|
T Consensus        18 ~~~~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~   96 (322)
T PRK06110         18 AMPPTPQYRWPLLAERL-GCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAA   96 (322)
T ss_pred             cCcCCCcccchhHHHHh-CCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCE
Confidence            56899999999999887 5799999999999999999998776665554432 223566799999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  170 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI  170 (410)
                      +||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.++++++  +.+|       .+||++..+.||+|+++||
T Consensus        97 ~ivvp~~~~---~~k~~~i~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~~-------~~~~~~~~~~G~~t~~~Ei  163 (322)
T PRK06110         97 TIVVPHGNS---VEKNAAMRALGAELIEHG-EDFQAAREEAARLAAER--GLHM-------VPSFHPDLVRGVATYALEL  163 (322)
T ss_pred             EEEEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEE-------cCCCCChHHhccchHHHHH
Confidence            999999887   479999999999999997 68999999888887764  2222       3556444578999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|+.    .+|+||+|+|+||+++|+...+.+.      .+.++|+.
T Consensus       164 ~~q~~----~~D~vv~pvG~Gg~~~Gv~~~~k~~------~~~~~vi~  201 (322)
T PRK06110        164 FRAVP----DLDVVYVPIGMGSGICGAIAARDAL------GLKTRIVG  201 (322)
T ss_pred             HhhCC----CCCEEEEecCHHHHHHHHHHHHHHh------CCCCEEEE
Confidence            99964    4799999999999999997776432      23577774

>PLN02356 phosphateglycerate kinase

Probab=100.00  E-value=5.5e-35  Score=289.96  Aligned_cols=184  Identities=21%  Similarity=0.117  Sum_probs=139.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc---CCceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~---~~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++|+... +.+||+|+|++|||||||||.+...+..+.+.+   ++++|+++||||||+++|++|+.+|+
T Consensus        50 ~ig~TPLv~~~~l~~~~-g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~  128 (423)
T PLN02356         50 AIGNTPLIRINSLSEAT-GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGC  128 (423)
T ss_pred             hcCCCceEECccccccc-CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence            35799999999998876 689999999999999999999877766666544   45688888999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeC-----C-CH-HHHH---HHHHHHHhhccc----CCcccc--------
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY-----G-NL-KEAM---NEAIKDWSNNIL----NSHYLI--------  146 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~-----g-~~-~~~~---~~~~~~~~~~~~----~~~~~~--------  146 (410)
                      +|+||||+.++   ++|+++|+.|||+|+.++.     + ++ ..+.   .++.+++++...    ..++++        
T Consensus       129 ~~~ivvP~~~s---~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~  205 (423)
T PLN02356        129 KCHVVIPDDVA---IEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISE  205 (423)
T ss_pred             cEEEEECCCCc---HHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence            99999999988   5899999999999999963     1 22 1111   223333332100    001111        


Q ss_pred             ------------cccccCccccccc---cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        147 ------------GTASGPHPYPTIV---RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       147 ------------~~~~~~~p~~~~~---~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                                  .+..+.+||+|+.   .++++| |+||++|++  + .+|+||+|+||||+++|+.+.|.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gT-g~EI~eQl~--g-~~D~vVv~vGtGGti~Gva~~lK~  273 (423)
T PLN02356        206 EEKENSLFSSSCTGGFFADQFENLANFRAHYEGT-GPEIWEQTQ--G-NLDAFVAAAGTGGTLAGVSRFLQE  273 (423)
T ss_pred             ccccccccccCCCCcEecCccCCcchHHHHHhhH-HHHHHHhcC--C-CCCEEEeCCCchHHHHHHHHHHHH
Confidence                        1234568888763   455665 999999963  2 589999999999999999666543

>PRK07591 threonine synthase; Validated

Probab=100.00  E-value=3.3e-35  Score=295.87  Aligned_cols=191  Identities=18%  Similarity=0.196  Sum_probs=163.1

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.++..+||+|+|+.|||||||||++..++..+.+.|.+.++ ++|+||||+|+|++|+++|++|+|||
T Consensus        89 ~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~~vv-~aSsGN~g~alA~~aa~~Gl~~~I~v  167 (421)
T PRK07591         89 FTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFTTVA-CASTGNLANSVAAHAARAGLDSCVFI  167 (421)
T ss_pred             CCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCCEEE-EeCCCHHHHHHHHHHHHcCCCEEEEE
Confidence            59999999998887446999999999999999999999999999999988775 59999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+..+   +.|+.+++.+||+|+.++ ++++++.+.+.+..++.  ..+|+.++..  +||   ..+|++|+++||++|+
T Consensus       168 P~~~~---~~k~~~~~~~GA~Vi~v~-g~~d~a~~~a~~~~~~~--~~~~~~n~~~--~p~---~ieG~~Tia~Ei~eQl  236 (421)
T PRK07591        168 PADLE---AGKIVGTLVYGPTLVAVD-GNYDDVNRLCSELANEH--EGWGFVNINL--RPY---YAEGSKTLGYEVAEQL  236 (421)
T ss_pred             cCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEEecCCC--Ccc---cccchHHHHHHHHHHc
Confidence            98644   378999999999999996 66888888888877654  1345554432  555   3689999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhc---------CCCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFIN---------SNFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---------~~~~vigVe~~g~~~~  402 (410)
                      +  +..||+||+|+|+||+++|++.+|++         +.+|||+|||++++..
T Consensus       237 ~--~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~  288 (421)
T PRK07591        237 G--WRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPI  288 (421)
T ss_pred             C--CCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHH
Confidence            6  34599999999999999999999985         3689999999997543

>PRK08246 threonine dehydratase; Provisional

Probab=100.00  E-value=3.5e-35  Score=284.96  Aligned_cols=184  Identities=23%  Similarity=0.335  Sum_probs=156.0

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      ..|||++++.+...  +.+||+|+|++|||||||+|++.+++..+++ +.++ |+++|+||||+++|++|+++|++|+||
T Consensus        22 ~~TPl~~~~~l~~~--~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~~~~-vv~aSsGN~g~a~A~~a~~~G~~~~iv   97 (310)
T PRK08246         22 RRTPVLEADGAGFG--PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-PAAG-VVAASGGNAGLAVAYAAAALGVPATVF   97 (310)
T ss_pred             CCCCeeeccccccC--CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-cCCe-EEEeCCCHHHHHHHHHHHHcCCCEEEE
Confidence            38999999888643  4799999999999999999999998877665 4444 456999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..++   .++.+++.+||+|+.++ ++++++++.+.+.+++.  +.+|+       +||++. ...|++|+|+||++
T Consensus        98 ~p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~~~~-------~~~~n~~~i~g~~t~~~Ei~e  164 (310)
T PRK08246         98 VPETAPP---AKVARLRALGAEVVVVG-AEYADALEAAQAFAAET--GALLC-------HAYDQPEVLAGAGTLGLEIEE  164 (310)
T ss_pred             ECCCCcH---HHHHHHHHCCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEeC-------CCCCChhhhcchHHHHHHHHH
Confidence            9986443   78899999999999985 45888888888877765  44444       565333 57899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcCCCeEEEEccCCCCcC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISKK  402 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~~~~vigVe~~g~~~~  402 (410)
                      |++    .||+||+|+|+||+++|++.+|+. .+|||+|||++++.+
T Consensus       165 q~~----~~D~iv~~vG~GG~~~Gi~~~~~~-~~~vi~ve~~~~~~~  206 (310)
T PRK08246        165 QAP----GVDTVLVAVGGGGLIAGIAAWFEG-RARVVAVEPEGAPTL  206 (310)
T ss_pred             hcC----CCCEEEEecCccHHHHHHHHHhcC-CCEEEEEeeCCChHH
Confidence            994    699999999999999999999965 599999999998764

>PRK07048 serine/threonine dehydratase; Validated

Probab=100.00  E-value=1.1e-35  Score=290.42  Aligned_cols=183  Identities=17%  Similarity=0.213  Sum_probs=148.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+....+.+....|+++|+||||+|+|++|+.+|+||+
T Consensus        21 ~~~~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~   99 (321)
T PRK07048         21 VAHRTPVLTSRTADART-GAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPAT   99 (321)
T ss_pred             CCCCCCCccchhhHHhc-CCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEE
Confidence            56799999999998776 68999999999999999999877665544433223345567999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+.+|+.|||+|+.++ ++++++.+.+.++.++.  +.+       +.+||+++ .+.|++|+++||
T Consensus       100 vvvp~~~~---~~k~~~~~~~GAeV~~~~-~~~~~~~~~a~~l~~~~--g~~-------~~~~~~~~~~~~g~~t~~~EI  166 (321)
T PRK07048        100 IVMPQDAP---AAKVAATRGYGGEVVTYD-RYTEDREEIGRRLAEER--GLT-------LIPPYDHPHVIAGQGTAAKEL  166 (321)
T ss_pred             EEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCE-------EECCCCCcchhhccchHHHHH
Confidence            99999887   589999999999999998 67778877777776653  222       35677655 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|++    .||+||+|+|+||+++|+...+.+.      .+.++|+.
T Consensus       167 ~~q~~----~~D~vv~~vGtGG~~~Gi~~~~k~~------~~~~~vig  204 (321)
T PRK07048        167 FEEVG----PLDALFVCLGGGGLLSGCALAARAL------SPGCKVYG  204 (321)
T ss_pred             HhhcC----CCCEEEEecChhHHHHHHHHHHHHh------CCCCEEEE
Confidence            99964    5999999999999999997766432      24678874

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=100.00  E-value=6.6e-35  Score=287.95  Aligned_cols=177  Identities=15%  Similarity=0.101  Sum_probs=146.0

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ..++|||+++++++... +.+||+|+|++|||||||||.+...+..+.+.+.   + .+|+++||||||+|+|++|+.+|
T Consensus        56 ~ig~TPl~~l~~l~~~~-g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G  134 (368)
T PLN02556         56 LIGKTPLVYLNKVTEGC-GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKG  134 (368)
T ss_pred             hcCCCccEEcccccccc-CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcC
Confidence            45799999999988765 6899999999999999999998877666766653   2 46777899999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc-c-ccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV-R-DFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~g~~  164 (410)
                      ++|+||||+.++   ++|+.+|+.|||+|+.++.. .+..+++++.+++++.+ + +      .+.+||+|+. . .||.
T Consensus       135 ~~~~ivvp~~~~---~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~-~-~------~~~~q~~np~~~~~g~~  203 (368)
T PLN02556        135 YKMILTMPSYTS---LERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTP-D-A------FMLQQFSNPANTQVHFE  203 (368)
T ss_pred             CCEEEEECCCCC---HHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcC-C-C------CccCCCCCHHHHHHHHH
Confidence            999999999887   58999999999999999732 24567778877776542 1 2      2357777773 3 5999


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      ++++||++|..  + .+|+||+|+|||||++|+...|.+
T Consensus       204 ttg~EI~eq~~--~-~~D~vV~~vGtGGt~aGv~~~lk~  239 (368)
T PLN02556        204 TTGPEIWEDTL--G-QVDIFVMGIGSGGTVSGVGKYLKS  239 (368)
T ss_pred             HHHHHHHHhcC--C-CCCEEEEcCCcchHHHHHHHHHHH
Confidence            99999999942  3 589999999999999999777754

>PRK08197 threonine synthase; Validated

Probab=100.00  E-value=3.3e-35  Score=294.19  Aligned_cols=190  Identities=24%  Similarity=0.331  Sum_probs=163.4

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|.+.++..+||+|+|++|||||||||++.+++..+.+.|.+++|+ +|+||||+|+|++|+++|++|+|||
T Consensus        79 ~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v~v  157 (394)
T PRK08197         79 MTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKHLAM-PTNGNAGAAWAAYAARAGIRATIFM  157 (394)
T ss_pred             CCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEE
Confidence            799999999887774369999999999999999999999999999988877655 9999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |++.++   .|+.+++++||+|+.++ ++++++.+.+.+.+++.  + +|..+++.  |||   ..+|++|++.||++|+
T Consensus       158 p~~~~~---~k~~~~~~~GA~Vi~v~-~~~~~~~~~a~~~~~~~--g-~~~~~~~~--np~---~ieG~~t~a~Ei~eQl  225 (394)
T PRK08197        158 PADAPE---ITRLECALAGAELYLVD-GLISDAGKIVAEAVAEY--G-WFDVSTLK--EPY---RIEGKKTMGLELAEQL  225 (394)
T ss_pred             cCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-cccccCCC--Ccc---chhcHHHHHHHHHHHc
Confidence            986544   78999999999999995 56888888888877664  3 45555444  444   3679999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhc---------CCCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFIN---------SNFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---------~~~~vigVe~~g~~~~  402 (410)
                      +  +..||+||+|+|+||+++|++++|++         ..+|||+|||++++.+
T Consensus       226 ~--~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l  277 (394)
T PRK08197        226 G--WRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPI  277 (394)
T ss_pred             C--CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHH
Confidence            6  34599999999999999999999985         3699999999998654

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=100.00  E-value=1.7e-35  Score=295.93  Aligned_cols=195  Identities=30%  Similarity=0.461  Sum_probs=157.9

Q ss_pred             CCCcCccccccccccCC-ceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEE
Q psy11239         14 RPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII   92 (410)
Q Consensus        14 ~~TPl~~~~~l~~~~~~-~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~i   92 (410)
                      ++|||+++++|.+.+|. .+||+|+|++|||||||||.++.++..+++.+...+++++|+||||+|+|++|+.+|++|+|
T Consensus        67 ~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~~Gl~~~V  146 (419)
T TIGR01415        67 RPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGLECKV  146 (419)
T ss_pred             CCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHcCCcEEE
Confidence            69999999999988753 69999999999999999999999988889989888888878999999999999999999999


Q ss_pred             EeccCCccccchhHHHHHhcCCEEEEEeCCCHHH------------------HHHHHHHHHhhcccCCcccccccccCcc
Q psy11239         93 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE------------------AMNEAIKDWSNNILNSHYLIGTASGPHP  154 (410)
Q Consensus        93 v~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p  154 (410)
                      |||+.++.+++.|+.+|+.|||+|+.++ +++++                  ++.++.+++.+. .+..|++++.     
T Consensus       147 ~mp~~s~~~k~~k~~~m~~~GA~Vi~~~-~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~-~~~~y~~~~~-----  219 (419)
T TIGR01415       147 FMVRVSFNQKPYRKYLMELYGAEVIPSP-SEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSV-----  219 (419)
T ss_pred             EEeCCCcccCHHHHHHHHHcCCEEEEEC-CchhhHHHHhhhcccccccchHHHHHHHHHHHHhC-CCCEEEeCCC-----
Confidence            9999766556789999999999999998 44433                  355666666553 2345655443     


Q ss_pred             ccccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        155 YPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       155 ~~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                       .|+...||+++|+||++|++..+..||+||+|+|+||+++|+..||.+.. +... +.++|+.
T Consensus       220 -~n~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~-l~g~-~~~rvia  280 (419)
T TIGR01415       220 -LNHVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADK-LSGK-IDRRFIA  280 (419)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHH-hcCC-CCCEEEE
Confidence             22345789999999999987555569999999999999999999986532 2211 2567775

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>PRK08813 threonine dehydratase; Provisional

Probab=100.00  E-value=1.4e-35  Score=289.34  Aligned_cols=173  Identities=21%  Similarity=0.241  Sum_probs=146.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ...+|||++++.+       +||+|+|++|||||||||++...+..+.+.+...-|+++|+||||+|+|++|+.+|++|+
T Consensus        36 ~i~~TPL~~~~~l-------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~  108 (349)
T PRK08813         36 YLSPTPLHYAERF-------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAI  108 (349)
T ss_pred             cCCCCCeEECCCC-------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            5689999998653       399999999999999999988887777777665445567999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++|+.|||+|+.++ ++|+++.+.+.+++++.  +.       .+.+||+++ .++||+|+|+||
T Consensus       109 IvvP~~~~---~~K~~~i~~~GAeVv~~g-~~~~~a~~~a~~la~~~--g~-------~~v~~~~np~~i~G~~Tig~EI  175 (349)
T PRK08813        109 TVMPHGAP---QTKIAGVAHWGATVRQHG-NSYDEAYAFARELADQN--GY-------RFLSAFDDPDVIAGQGTVGIEL  175 (349)
T ss_pred             EEEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EEcCccCChHHHHHHHHHHHHH
Confidence            99999988   589999999999999997 78999999998887754  22       346788777 589999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|      .||+||+|+|+||+++|+...|.+        ++++|+.
T Consensus       176 ~e~------~pD~VvvpvGgGGliaGia~~lk~--------~~~rVig  209 (349)
T PRK08813        176 AAH------APDVVIVPIGGGGLASGVALALKS--------QGVRVVG  209 (349)
T ss_pred             HcC------CCCEEEEEeCccHHHHHHHHHHhc--------CCCEEEE
Confidence            976      489999999999999999776642        1467774

>PRK09224 threonine dehydratase; Reviewed

Probab=100.00  E-value=9.5e-35  Score=298.10  Aligned_cols=183  Identities=25%  Similarity=0.282  Sum_probs=152.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+.... +.+..++|+ +|+||||+++|++|+.+|++|
T Consensus        17 ~~~~TPL~~~~~Ls~~~-g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~-aSaGNha~avA~aa~~lGi~~   94 (504)
T PRK09224         17 VAQETPLEKAPKLSARL-GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVIT-ASAGNHAQGVALSAARLGIKA   94 (504)
T ss_pred             cCCCCCceehhHhHHHh-CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEE-ECcCHHHHHHHHHHHHcCCCE
Confidence            56899999999999887 689999999999999999998765544332 334445555 699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.+|   ..|++.++.|||+|+.++ ++++++++.+.+++++.  +.       .+.+||+++ .++|++|++.|
T Consensus        95 ~IvmP~~tp---~~K~~~~r~~GA~Vi~~g-~~~~~a~~~a~~l~~~~--g~-------~~v~~f~~~~~i~G~gTi~~E  161 (504)
T PRK09224         95 VIVMPVTTP---DIKVDAVRAFGGEVVLHG-DSFDEAYAHAIELAEEE--GL-------TFIHPFDDPDVIAGQGTIAME  161 (504)
T ss_pred             EEEECCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EEeCCCCCcHHHHhHHHHHHH
Confidence            999999988   489999999999999997 68999999998887764  22       346888877 58999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++|++  + .||+||+|+||||+++|+.+.+...      .+.++|+.
T Consensus       162 I~~q~~--~-~~D~vvvpvGgGGliaGia~~lk~~------~p~~kVig  201 (504)
T PRK09224        162 ILQQHP--H-PLDAVFVPVGGGGLIAGVAAYIKQL------RPEIKVIG  201 (504)
T ss_pred             HHHhcc--C-CCCEEEEecChhHHHHHHHHHHHHh------CCCCEEEE
Confidence            999964  2 4899999999999999997665432      24677774

>PRK06608 threonine dehydratase; Provisional

Probab=100.00  E-value=8.9e-35  Score=284.77  Aligned_cols=184  Identities=27%  Similarity=0.334  Sum_probs=156.1

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCC-ceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK-RIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~-~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      .|||+++++|++.. +++||+|+|++||+||||+|++.+++..+.+.|.. ..|+++|+||||+++|++|+.+|++|+||
T Consensus        23 ~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv  101 (338)
T PRK06608         23 LTPIVHSESLNEML-GHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIY  101 (338)
T ss_pred             CCCccchHhHHHHh-CCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            79999999998877 68999999999999999999999999999888762 34556999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..++   .|+++++.+||+|+.++ . .+++.+++.+ .++.  +.+|+       +||++. ..+|++|++.||++
T Consensus       102 ~p~~~~~---~k~~~l~~~GA~V~~~~-~-~~~~~~~a~~-~~~~--~~~~~-------~~~~~~~~~~g~~t~a~Ei~~  166 (338)
T PRK06608        102 LPLNTSK---VKQQAALYYGGEVILTN-T-RQEAEEKAKE-DEEQ--GFYYI-------HPSDSDSTIAGAGTLCYEALQ  166 (338)
T ss_pred             ECCCCCH---HHHHHHHhCCCEEEEEC-C-HHHHHHHHHH-HHhC--CCEEc-------CCCCCHHHhccHHHHHHHHHH
Confidence            9986544   78999999999999985 3 4666666666 4332  44444       566332 56899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS  400 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~  400 (410)
                      |++   ..||+||+|+|+|||++|++.+++..  ++|||||||++++
T Consensus       167 q~~---~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~  210 (338)
T PRK06608        167 QLG---FSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNAN  210 (338)
T ss_pred             hcC---CCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCCh
Confidence            995   46999999999999999999999864  8999999999886

>PRK08639 threonine dehydratase; Validated

Probab=100.00  E-value=1.6e-35  Score=298.45  Aligned_cols=177  Identities=20%  Similarity=0.249  Sum_probs=145.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHH-HHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA-KFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~-~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||++...+... ++... ..|+++|+||||+++|++|+.+|+||
T Consensus        22 ~i~~TPl~~~~~ls~~~-g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~-~~Vv~aSsGN~g~alA~~a~~~G~~~   99 (420)
T PRK08639         22 VVPETPLQRNDYLSEKY-GANVYLKREDLQPVRSYKLRGAYNAISQLSDEELA-AGVVCASAGNHAQGVAYACRHLGIPG   99 (420)
T ss_pred             cCcCCCccchHHHHHHh-CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhC-CEEEEECccHHHHHHHHHHHHcCCCE
Confidence            56899999999999877 68999999999999999999887655432 22233 34566799999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEe--CCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQ--YGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIG  167 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~  167 (410)
                      +||||+.++   +.|+..++.|||+|+.+.  .++++++++.+.+++++.  +       ..+.|||+++ .++||+|+|
T Consensus       100 ~IvmP~~~~---~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~--g-------~~~~~~~~~~~~~~G~~tig  167 (420)
T PRK08639        100 VIFMPVTTP---QQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET--G-------ATFIPPFDDPDVIAGQGTVA  167 (420)
T ss_pred             EEEECCCCh---HHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc--C-------CcccCCCCChhHhcchhHHH
Confidence            999999988   489999999999854332  246999999999988764  2       2347899877 589999999


Q ss_pred             HHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      +||++|++..+ .||+||+|+|+||+++|+...+..
T Consensus       168 ~EI~eq~~~~~-~~D~vv~~vG~GG~~aGva~~~k~  202 (420)
T PRK08639        168 VEILEQLEKEG-SPDYVFVPVGGGGLISGVTTYLKE  202 (420)
T ss_pred             HHHHHhccccC-CCCEEEEecChhHHHHHHHHHHHH
Confidence            99999975211 389999999999999999776644

>PRK08246 threonine dehydratase; Provisional

Probab=100.00  E-value=2.1e-35  Score=286.53  Aligned_cols=169  Identities=22%  Similarity=0.284  Sum_probs=142.9

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      .+++|||++++++...  +.+||+|+|++|||||||||.+...+..+++  +...|+++||||||+|+|++|+.+|++|+
T Consensus        20 ~i~~TPl~~~~~l~~~--~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~--~~~~vv~aSsGN~g~a~A~~a~~~G~~~~   95 (310)
T PRK08246         20 HIRRTPVLEADGAGFG--PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV--PAAGVVAASGGNAGLAVAYAAAALGVPAT   95 (310)
T ss_pred             cCCCCCeeeccccccC--CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc--cCCeEEEeCCCHHHHHHHHHHHHcCCCEE
Confidence            6689999999988754  5899999999999999999987766554443  34455667999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+.+|+.|||+|+.++ ++++++++.+.+.+++.  + +      .+.+||+|+ .+.||+|+++||
T Consensus        96 iv~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g-~------~~~~~~~n~~~i~g~~t~~~Ei  162 (310)
T PRK08246         96 VFVPETAP---PAKVARLRALGAEVVVVG-AEYADALEAAQAFAAET--G-A------LLCHAYDQPEVLAGAGTLGLEI  162 (310)
T ss_pred             EEECCCCc---HHHHHHHHHCCCEEEEeC-CCHHHHHHHHHHHHHhc--C-C------EeCCCCCChhhhcchHHHHHHH
Confidence            99999887   489999999999999998 67888888888877654  2 2      346778766 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPI  201 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl  201 (410)
                      ++|++    .||+||+|+|+||+++|+...|
T Consensus       163 ~eq~~----~~D~iv~~vG~GG~~~Gi~~~~  189 (310)
T PRK08246        163 EEQAP----GVDTVLVAVGGGGLIAGIAAWF  189 (310)
T ss_pred             HHhcC----CCCEEEEecCccHHHHHHHHHh
Confidence            99963    4999999999999999997776

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=100.00  E-value=2.6e-35  Score=286.50  Aligned_cols=191  Identities=21%  Similarity=0.187  Sum_probs=152.0

Q ss_pred             CCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC--CceEEEeCccHHHHHHHHHHHHcCCcEEE
Q psy11239         15 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESII   92 (410)
Q Consensus        15 ~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~i   92 (410)
                      +|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.  ...|+++|+||||+|+|++|+.+|++|+|
T Consensus         1 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i   79 (316)
T cd06448           1 KTPLIESTALSKTA-GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTI   79 (316)
T ss_pred             CCCccccchhhHhh-CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence            69999999999887 6899999999999999999988777666766663  44566679999999999999999999999


Q ss_pred             EeccCCccccchhHHHHHhcCCEEEEEeCCC-HHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         93 YIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        93 v~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      |||+.++   +.|+++|+.|||+|+.++ ++ ++++.+.+.++.++. ++.+|       .+||+|| .+.||+|+++||
T Consensus        80 v~p~~~~---~~k~~~l~~~GA~v~~~~-~~~~~~~~~~~~~l~~~~-~~~~~-------~~~~~n~~~~~g~~t~~~Ei  147 (316)
T cd06448          80 VVPESTK---PRVVEKLRDEGATVVVHG-KVWWEADNYLREELAEND-PGPVY-------VHPFDDPLIWEGHSSMVDEI  147 (316)
T ss_pred             EECCCCC---HHHHHHHHHcCCEEEEEC-CchHHHHHHHHHHHHhcc-CCcEE-------eCCCCCchhhccccHHHHHH
Confidence            9999887   589999999999999997 45 666666666655442 12233       4666665 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCch
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGA  228 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS  228 (410)
                      ++|++.. ..||+||+|+|+||+++|+...|.+..     .+.++|+.    .+|.|+
T Consensus       148 ~~q~~~~-~~~D~vv~~vG~Gg~~~Gv~~~~k~~~-----~~~~~ii~----Vep~g~  195 (316)
T cd06448         148 AQQLQSQ-EKVDAIVCSVGGGGLLNGIVQGLERNG-----WGDIPVVA----VETEGA  195 (316)
T ss_pred             HHHcccc-CCCCEEEEEeCchHHHHHHHHHHHhcC-----CCCCEEEE----EeeCCC
Confidence            9997522 259999999999999999988876531     13567774    455554

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=100.00  E-value=1.7e-34  Score=288.55  Aligned_cols=198  Identities=19%  Similarity=0.167  Sum_probs=161.2

Q ss_pred             ccccccccccccccccCceeEEeecCC-CCCchhhHHHHHHHHHHHH--HcCCC--------------------ceEEec
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAK--FLKKK--------------------RIICET  253 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~-~ptgS~K~R~a~~~~~~a~--~~g~~--------------------~~v~~~  253 (410)
                      ..|||+++++|++.++..+||+|+|++ ||+||||+|++.+.+..+.  +.+.+                    ..|+++
T Consensus        43 ~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~a  122 (399)
T PRK08206         43 APTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATA  122 (399)
T ss_pred             CCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEe
Confidence            599999999999888436999999997 5999999999887776543  33321                    246779


Q ss_pred             CchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCC
Q psy11239        254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTAS  333 (410)
Q Consensus       254 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~  333 (410)
                      |+||||+++|++|+.+|++|+||||+..++   .++..|+.+||+|+.++ +++++++..+.+.+++.  +. |++.+..
T Consensus       123 SsGN~g~alA~~a~~~G~~~~Ivvp~~~~~---~k~~~i~~~GA~Vi~v~-~~~~~~~~~a~~~~~~~--g~-~~v~~~~  195 (399)
T PRK08206        123 TDGNHGRGVAWAAQQLGQKAVIYMPKGSSE---ERVDAIRALGAECIITD-GNYDDSVRLAAQEAQEN--GW-VVVQDTA  195 (399)
T ss_pred             CCcHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHHc--CC-EEecCcc
Confidence            999999999999999999999999986543   78889999999999996 56999999998887765  33 4443322


Q ss_pred             CCCCCh---hHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC----CCeEEEEccCCCCcC
Q psy11239        334 GPHPYP---TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS----NFKLVAIESGGISKK  402 (410)
Q Consensus       334 ~~~~~~---~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~----~~~vigVe~~g~~~~  402 (410)
                      + +||+   .++.+||+|++.||++|+...+..||+||+|+|+||+++|++.++++.    .+|||+|||++++.+
T Consensus       196 ~-~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l  270 (399)
T PRK08206        196 W-EGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCL  270 (399)
T ss_pred             c-cCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchH
Confidence            2 3553   237899999999999999732346999999999999999999999753    689999999998754

>PRK10717 cysteine synthase A; Provisional

Probab=100.00  E-value=2.9e-35  Score=288.44  Aligned_cols=203  Identities=20%  Similarity=0.157  Sum_probs=153.5

Q ss_pred             ChhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHH
Q psy11239          1 MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGV   77 (410)
Q Consensus         1 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~   77 (410)
                      |++++.|..  ...+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.   +.+|+++|+||||+
T Consensus         1 ~~~~~~~~~--~~g~TPL~~~~~l~~~~-g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~   77 (330)
T PRK10717          1 MKIFEDVSD--TIGNTPLIRLNRASEAT-GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGI   77 (330)
T ss_pred             CchhhhHHH--HhCCCceEEccccCCCC-CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHH
Confidence            455666655  45799999999999887 5799999999999999999998877777766654   24577789999999


Q ss_pred             HHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHH---HHHHHHHHHhh---cccCCccccccccc
Q psy11239         78 STATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE---AMNEAIKDWSN---NILNSHYLIGTASG  151 (410)
Q Consensus        78 a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~  151 (410)
                      |+|++|+.+|++|+||||+.++   +.|+++|+.|||+|+.++...+++   ..+.+.+.+++   ...+.+      .+
T Consensus        78 alA~~a~~~G~~~~vv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~------~~  148 (330)
T PRK10717         78 GLALVAAARGYKTVIVMPETQS---QEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGA------IW  148 (330)
T ss_pred             HHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCe------Ee
Confidence            9999999999999999999887   589999999999999998321221   22332322222   111122      24


Q ss_pred             Cccccccc--cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCch
Q psy11239        152 PHPYPTIV--RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGA  228 (410)
Q Consensus       152 ~~p~~~~~--~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS  228 (410)
                      .+||+||.  ..||+|++.||++|++   ..||+||+|+|+||+++|+...|.+.      .+.++|+.    .+|.++
T Consensus       149 ~~~~~~~~~~~~g~~t~a~Ei~~ql~---~~~d~iv~~vG~GG~~~Gi~~~~k~~------~~~~~vi~----Vep~~~  214 (330)
T PRK10717        149 ANQFDNPANREAHYETTGPEIWEQTD---GKVDGFVCAVGTGGTLAGVSRYLKET------NPKVKIVL----ADPTGS  214 (330)
T ss_pred             cCCCCChhhHHHHHHhHHHHHHHhcC---CCCCEEEEecCchHHHHHHHHHHHHh------CCCCEEEE----EcCCCC
Confidence            67777763  4789999999999964   24899999999999999997766542      23567763    445444

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=100.00  E-value=9.2e-35  Score=282.05  Aligned_cols=188  Identities=24%  Similarity=0.330  Sum_probs=159.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      +|||+++++|...+ +.+||+|+|++||+||||||.+.+++..+++.+....|+++|+||||+|+|++|+++|++|++||
T Consensus        17 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivv   95 (304)
T cd01562          17 RTPLLTSPTLSELL-GAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVM   95 (304)
T ss_pred             CCCcccchhhHHHh-CCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            89999999998777 57999999999999999999999999888776633335569999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+..+   +.++++|+.+||+|+.++ ++++++.+.+.+++++.  +.+|+ .++.  +++   ...|+++++.||++|+
T Consensus        96 p~~~~---~~k~~~l~~~Ga~vi~~~-~~~~~~~~~a~~la~~~--~~~~~-~~~~--n~~---~~~g~~~~~~Ei~~q~  163 (304)
T cd01562          96 PETAP---AAKVDATRAYGAEVVLYG-EDFDEAEAKARELAEEE--GLTFI-HPFD--DPD---VIAGQGTIGLEILEQV  163 (304)
T ss_pred             CCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEEe-CCCC--Ccc---hhccHHHHHHHHHHhc
Confidence            97654   378999999999999996 45888988888887765  45554 4433  222   4578999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      .    .||+||+|+|||||++|++.+|+..  ++|||+|||.+++.+
T Consensus       164 ~----~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~  206 (304)
T cd01562         164 P----DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAM  206 (304)
T ss_pred             C----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchH
Confidence            5    3999999999999999999999864  899999999988754

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=100.00  E-value=2.2e-34  Score=288.33  Aligned_cols=201  Identities=29%  Similarity=0.472  Sum_probs=165.9

Q ss_pred             ecccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        196 GRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      +.+|||+++++|.+.++ +.+||+|+|++||+||||+|++..++..+++.|.+++++++|+||||+|+|++|+.+|++|+
T Consensus        75 ~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G~alA~aaa~~Gl~~~  154 (427)
T PRK12391         75 WRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWGSALALACALFGLECT  154 (427)
T ss_pred             cCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCCEEEEccCchHHHHHHHHHHHHcCCcEE
Confidence            46899999999988764 26999999999999999999999999999999998888888999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-----------------HHHHHHHHHHHHHccCCCceEEecCCCCCCC
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-----------------LKEAMNEAIKDWSNNILNSHYLIGTASGPHP  337 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  337 (410)
                      ||||..+...++.++.+|+.+||+|+.++...                 +..++.++.+.+.++ ++..|++++..    
T Consensus       155 V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~-~~~~y~~~s~~----  229 (427)
T PRK12391        155 VFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKR-PDTKYALGSVL----  229 (427)
T ss_pred             EEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhC-CCcEEEcCCCC----
Confidence            99997544434577899999999999986321                 222577777777664 24567754322    


Q ss_pred             ChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc------CCCeEEEEccCCCCcCC
Q psy11239        338 YPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN------SNFKLVAIESGGISKKR  403 (410)
Q Consensus       338 ~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~------~~~~vigVe~~g~~~~~  403 (410)
                        ..+..|+.++|.||++|+...|..||+||+|+|+||+++|++.+|.+      .++|||+|||++++.+.
T Consensus       230 --~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~  299 (427)
T PRK12391        230 --NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLT  299 (427)
T ss_pred             --cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhc
Confidence              12578999999999999975566899999999999999999987731      47999999999997553

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=100.00  E-value=3.4e-35  Score=294.20  Aligned_cols=197  Identities=29%  Similarity=0.442  Sum_probs=159.7

Q ss_pred             CCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      .+++|||+++++|.+.+| +.+||+|+|++||+||||+|.++.+++.+++.+...+++++|+||||+|+|++|+.+|++|
T Consensus        74 ~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G~alA~aaa~~Gl~~  153 (427)
T PRK12391         74 LWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWGSALALACALFGLEC  153 (427)
T ss_pred             ccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCCEEEEccCchHHHHHHHHHHHHcCCcE
Confidence            678999999999998875 3699999999999999999999999888899888888888789999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHH------------------HHHHHHHHHHhhcccCCcccccccccC
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK------------------EAMNEAIKDWSNNILNSHYLIGTASGP  152 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (410)
                      +||||+.+..+++.|+.+|+.|||+|+.++ +++.                  .++.++.+.+.+. .+.+|+.++.   
T Consensus       154 ~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~-~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~-~~~~y~~~s~---  228 (427)
T PRK12391        154 TVFMVRVSYEQKPYRRSLMETYGAEVIPSP-SDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKR-PDTKYALGSV---  228 (427)
T ss_pred             EEEEecCCcccCHHHHHHHHHCCCEEEEEC-CchhhhhhhhhhcCccccccHHHHHHHHHHHHHhC-CCcEEEcCCC---
Confidence            999998665556789999999999999997 3322                  2567777777654 2445654432   


Q ss_pred             ccccccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        153 HPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       153 ~p~~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                         +++...||.++|+||++|++..+..||+||+|+|+||+++|+..|+.+.....  .+.++|+.
T Consensus       229 ---~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g--~~~~riia  289 (427)
T PRK12391        229 ---LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEG--KKDTRFIA  289 (427)
T ss_pred             ---CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcC--CCCceEEE
Confidence               12356899999999999987555579999999999999999998887543221  12567774

>PRK07409 threonine synthase; Validated

Probab=100.00  E-value=1.5e-34  Score=285.78  Aligned_cols=187  Identities=21%  Similarity=0.278  Sum_probs=158.5

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|+... +.+||+|+|++||+||||+|++.+++..+.+.+.+++| ++|+||||+++|++|+.+|++|+|||
T Consensus        31 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~iv-~aSsGN~g~alA~~a~~~G~~~~ivv  108 (353)
T PRK07409         31 NTPLIPAPNLSELL-GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAKAVI-CASTGNTSASAAAYAARAGLKAFVLI  108 (353)
T ss_pred             CCCEEEchhhHHHh-CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCEEE-EECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            79999999988776 57999999999999999999999999999988877655 59999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+...+  ..|++.|+.+||+|+.++ ++++++.+.+.+..++.  + +|.+++ .  ||+   ...|+.|++.||++|+
T Consensus       109 P~~~~~--~~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~l~~~~--~-~~~~~~-~--n~~---~~~g~~t~~~EI~~q~  176 (353)
T PRK07409        109 PEGKIA--LGKLAQAVMYGAEIIQID-GNFDDALEIVRELAEKY--P-VTLVNS-V--NPY---RIEGQKTAAFEIVDAL  176 (353)
T ss_pred             cCCCCc--hhhHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-ceecCC-C--Cch---hhhhHHHHHHHHHHHh
Confidence            986333  368889999999999996 55888888888876654  3 444322 1  333   4678999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCc
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISK  401 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~  401 (410)
                      .   ..||+||+|+||||+++|++.+|++.        .+|||+|||.+++.
T Consensus       177 ~---~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~  225 (353)
T PRK07409        177 G---DAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAP  225 (353)
T ss_pred             C---CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCCh
Confidence            4   47999999999999999999999753        48999999998854

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=100.00  E-value=1.7e-34  Score=288.87  Aligned_cols=193  Identities=15%  Similarity=0.132  Sum_probs=159.1

Q ss_pred             cccccccccccccccc-------CceeEEeecCCCC-CchhhHHHHHHHHHH-----HHHcCC-----------------
Q psy11239        197 RPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK-----------------  246 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~-------~~~v~~K~e~~~p-tgS~K~R~a~~~~~~-----a~~~g~-----------------  246 (410)
                      ..|||++++++++.++       +.+||+|+|+.|| +||||+|++.+++..     +++.|.                 
T Consensus        69 ~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~  148 (431)
T TIGR02035        69 IESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKD  148 (431)
T ss_pred             cCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhh
Confidence            5899999999887442       4699999999999 999999999998863     445554                 


Q ss_pred             ---CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCC
Q psy11239        247 ---KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNIL  323 (410)
Q Consensus       247 ---~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~  323 (410)
                         +..|+++|+||||+++|++|+.+|++|+||||++.+.   .|+++++.+||+|+.++ ++++++.+.++++.++.  
T Consensus       149 ~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~---~K~~~ir~~GAeVv~~~-~~~~~a~~~A~~la~~~--  222 (431)
T TIGR02035       149 FFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQ---WKKDKLRSKGVTVVEYE-SDYGVAVEEGRKNADAD--  222 (431)
T ss_pred             cccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--
Confidence               1345669999999999999999999999999986554   89999999999999995 55999999999988775  


Q ss_pred             CceEEecCCCCCCCCh-hHHHhhhhhHHHHHHHhhhhcC-----CCCCEEEEccCchhHHHHHHHHHhcC---CCeEEEE
Q psy11239        324 NSHYLIGTASGPHPYP-TIVRDFQSIIGYEIHQQLNFNF-----YNKKYILACVGGGSNALGIFYTFINS---NFKLVAI  394 (410)
Q Consensus       324 ~~~~~~~~~~~~~~~~-~~~~~g~~t~g~Ei~~q~~~~~-----~~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigV  394 (410)
                      +..|++      ++++ .++.+||+|+|.||++|+...+     ..||+|++|+|+||+++|++.++++.   ++|||+|
T Consensus       223 ~~~~~~------d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~V  296 (431)
T TIGR02035       223 PMCYFV------DDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFA  296 (431)
T ss_pred             CCeEEC------CCCCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEE
Confidence            234443      2222 2357999999999999996321     25789999999999999999999863   8999999


Q ss_pred             ccCCCCc
Q psy11239        395 ESGGISK  401 (410)
Q Consensus       395 e~~g~~~  401 (410)
                      ||++++.
T Consensus       297 Ep~~s~~  303 (431)
T TIGR02035       297 EPTHSPC  303 (431)
T ss_pred             eeCCCHH
Confidence            9999863

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>PRK02991 D-serine dehydratase; Provisional

Probab=100.00  E-value=1.9e-34  Score=289.63  Aligned_cols=194  Identities=16%  Similarity=0.158  Sum_probs=158.4

Q ss_pred             ecccccccccccccccc-------CceeEEeecCCCC-CchhhHHHHHHHHHH-----HHHcCC----------------
Q psy11239        196 GRPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK----------------  246 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~-------~~~v~~K~e~~~p-tgS~K~R~a~~~~~~-----a~~~g~----------------  246 (410)
                      -..|||++++.+++..+       +.+||+|+|++|| |||||+|++++++..     +++.|.                
T Consensus        73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~  152 (441)
T PRK02991         73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR  152 (441)
T ss_pred             ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence            35899999998876653       1699999999999 999999999998764     334442                


Q ss_pred             ----CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccC
Q psy11239        247 ----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI  322 (410)
Q Consensus       247 ----~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~  322 (410)
                          ...|+++|+||||+++|++|+.+|++|+||||++.++   .|++.|+.+||+|+.++ ++++++.+.+.+..+++ 
T Consensus       153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~---~K~~~ir~~GAeVi~~~-~~~~~a~~~A~~la~~~-  227 (441)
T PRK02991        153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQ---WKKDKLRSHGVTVVEYE-GDYGVAVEEGRKAAESD-  227 (441)
T ss_pred             hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc-
Confidence                1245669999999999999999999999999986554   88999999999999985 55999999999887765 


Q ss_pred             CCceEEecCCCCCCCChh-HHHhhhhhHHHHHHHhhhhcC-----CCCCEEEEccCchhHHHHHHHHHhc---CCCeEEE
Q psy11239        323 LNSHYLIGTASGPHPYPT-IVRDFQSIIGYEIHQQLNFNF-----YNKKYILACVGGGSNALGIFYTFIN---SNFKLVA  393 (410)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~-~~~~g~~t~g~Ei~~q~~~~~-----~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vig  393 (410)
                       +..|++      ++|++ .+.+||+|+|.||++|++..+     ..||+||+|+|+||+++|++.+|++   +++|||+
T Consensus       228 -~~~~~~------~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVig  300 (441)
T PRK02991        228 -PNCYFI------DDENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFF  300 (441)
T ss_pred             -CCeEeC------CCCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEE
Confidence             234443      44422 268999999999999997322     2478999999999999999999986   3799999


Q ss_pred             EccCCCCc
Q psy11239        394 IESGGISK  401 (410)
Q Consensus       394 Ve~~g~~~  401 (410)
                      |||++++.
T Consensus       301 VEp~ga~~  308 (441)
T PRK02991        301 AEPTHSPC  308 (441)
T ss_pred             EecCCChH
Confidence            99999863

>PLN02569 threonine synthase

Probab=100.00  E-value=7.7e-34  Score=288.30  Aligned_cols=180  Identities=14%  Similarity=0.179  Sum_probs=148.7

Q ss_pred             CCCcCccccccccc-cCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC----CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         14 RPTPIYYCKNISNI-LKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        14 ~~TPl~~~~~l~~~-~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~----~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ++|||+++++|.+. +|..+||+|+|++|||||||||++...+..+++.+.    ...|+++||||||+|+|++|+.+|+
T Consensus       132 G~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl  211 (484)
T PLN02569        132 GNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGI  211 (484)
T ss_pred             CCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCC
Confidence            68999999999887 755699999999999999999988766666666543    2345657999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHH
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY  168 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~  168 (410)
                      +|+||||++...  +.|+.+|+.|||+|+.++ ++++++++.+.++.++.   .+|+.++.   |||   .++||+|+++
T Consensus       212 ~~~I~vP~~~~~--~~k~~qi~a~GA~Vi~v~-g~~d~a~~~a~e~~~~~---~~~~~n~~---Np~---~ieG~kT~a~  279 (484)
T PLN02569        212 PSIVFLPADKIS--IAQLVQPIANGALVLSID-TDFDGCMRLIREVTAEL---PIYLANSL---NSL---RLEGQKTAAI  279 (484)
T ss_pred             eEEEEEcCCCCC--HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHHc---CCEecCCC---Ccc---hhHhHHHHHH
Confidence            999999997332  489999999999999998 79999999998877654   24433321   444   4699999999


Q ss_pred             HHHHhhhhcCCCccEEEEecCCCCceeeccccccccccc
Q psy11239        169 EIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNI  207 (410)
Q Consensus       169 EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L  207 (410)
                      ||++|+.  +..||+||+|+|+||++.|++..|.++..+
T Consensus       280 EI~eQl~--~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~  316 (484)
T PLN02569        280 EILQQFD--WEVPDWVIVPGGNLGNIYAFYKGFKMCKEL  316 (484)
T ss_pred             HHHHHcC--CCCCCEEEEeCCchHHHHHHHHHHHHHHHc
Confidence            9999964  335999999999999999999988776544

>TIGR01136 cysKM cysteine synthases

Probab=100.00  E-value=5e-35  Score=283.01  Aligned_cols=186  Identities=17%  Similarity=0.108  Sum_probs=152.3

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+..+.+.+.   +.+|+++|+||||+|+|++|+.+|+
T Consensus         4 ~vg~TPL~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~   82 (299)
T TIGR01136         4 LIGNTPLVRLNRLAPGC-DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGY   82 (299)
T ss_pred             ccCCCceEEccccCCCC-CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCC
Confidence            35799999999999877 5799999999999999999998877666666654   3456778999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccchh
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQSI  165 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~t  165 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++.. +++++++.+.+++++.  +.++      ..+||+|+.  ..||++
T Consensus        83 ~~~i~vp~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~--~~~~------~~~~~~~~~~~~~g~~t  151 (299)
T TIGR01136        83 KLILTMPETMS---LERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAET--NKYV------MLDQFENPANPEAHYKT  151 (299)
T ss_pred             cEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhC--CCeE------ecCCCCCchhHHHHHHH
Confidence            99999999887   48999999999999999832 2688888888877653  2222      356676552  578999


Q ss_pred             HHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      +++||++|++  + .||+||+|+|+||+++|+...|.+..      +.++|+.
T Consensus       152 ~~~Ei~~ql~--~-~~d~iv~~vG~Gg~~~G~~~~~~~~~------~~~~vi~  195 (299)
T TIGR01136       152 TGPEIWRDTD--G-RIDHFVAGVGTGGTITGVGRYLKEQN------PNIKIVA  195 (299)
T ss_pred             HHHHHHHhcC--C-CCCEEEEcCchhHHHHHHHHHHHHhC------CCCEEEE
Confidence            9999999964  2 49999999999999999987775432      3567774

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>KOG1250|consensus

Probab=100.00  E-value=2.8e-35  Score=279.31  Aligned_cols=175  Identities=27%  Similarity=0.294  Sum_probs=151.4

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHH-HHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQ-SLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~-~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      .+..|||.+.-.|++.+ +.++|+|+|++||+||||.|++-.. ..++++.+..++++ +|+||||+|+|++|+++|+||
T Consensus        63 ~~~~TPl~~s~~lS~~~-g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gVia-sSaGNha~a~Ayaa~~Lgipa  140 (457)
T KOG1250|consen   63 VIVETPLLKSVALSKKA-GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIA-SSAGNHAQAAAYAARKLGIPA  140 (457)
T ss_pred             ceecccchhhhhhhhhc-CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEE-ecCccHHHHHHHHHHhcCCce
Confidence            56689999998899887 8999999999999999999987533 33555555666666 599999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||..+|.   .|++.++.+||+|+... .+++++...+.+.++++         +..+.+|||+| +++|++|++.|
T Consensus       141 TIVmP~~tp~---~kiq~~~nlGA~Vil~G-~~~deAk~~a~~lAke~---------gl~yI~pfDhP~I~aGqgTig~E  207 (457)
T KOG1250|consen  141 TIVMPVATPL---MKIQRCRNLGATVILSG-EDWDEAKAFAKRLAKEN---------GLTYIPPFDHPDIWAGQGTIGLE  207 (457)
T ss_pred             EEEecCCChH---HHHHHHhccCCEEEEec-ccHHHHHHHHHHHHHhc---------CceecCCCCCchhhcCcchHHHH
Confidence            9999999995   79999999999999885 57999999999999876         23568999999 68999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYC  204 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~  204 (410)
                      |.+|+..   .++.|+||||+||+++|+.|.+.++
T Consensus       208 Il~ql~~---~~~AI~vpVGGGGLiaGIat~vk~~  239 (457)
T KOG1250|consen  208 ILEQLKE---PDGAIVVPVGGGGLIAGIATGVKRV  239 (457)
T ss_pred             HHHhhcC---CCCeEEEecCCchhHHHHHHHHHHh
Confidence            9999752   3559999999999999999888654

>PRK07334 threonine dehydratase; Provisional

Probab=100.00  E-value=4e-35  Score=294.44  Aligned_cols=182  Identities=22%  Similarity=0.254  Sum_probs=149.6

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||.+...+.... +.+..++ +++|+||||+|+|++|+.+|++|
T Consensus        20 ~i~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~   97 (403)
T PRK07334         20 QVLRTPCVHSRTLSQIT-GAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGV-IAMSAGNHAQGVAYHAQRLGIPA   97 (403)
T ss_pred             CCCCCCccchHHHHHhh-CCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCcE-EEECCcHHHHHHHHHHHHcCCCE
Confidence            45899999999999887 579999999999999999998776655432 2233344 55699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.++   +.|+++|+.|||+|+.++ ++++++++.+.+++++.  +.       .+.+||+++ .+.||+|+++|
T Consensus        98 ~iv~p~~~~---~~k~~~~~~~GA~v~~~~-~~~~~~~~~a~~l~~~~--~~-------~~~~~~~~~~~~~g~~t~~~E  164 (403)
T PRK07334         98 TIVMPRFTP---TVKVERTRGFGAEVVLHG-ETLDEARAHARELAEEE--GL-------TFVHPYDDPAVIAGQGTVALE  164 (403)
T ss_pred             EEEECCCCC---HHHHHHHHHcCCEEEEEC-cCHHHHHHHHHHHHHhc--CC-------EecCCCCCHHHHHhHHHHHHH
Confidence            999999988   589999999999999987 67899999888887653  22       235777766 47999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++|++    .||+||+|+|+||+++|+...|...      .+.++|+.
T Consensus       165 i~~q~~----~~d~vv~~vG~GG~~~Gi~~~lk~~------~~~~~vi~  203 (403)
T PRK07334        165 MLEDAP----DLDTLVVPIGGGGLISGMATAAKAL------KPDIEIIG  203 (403)
T ss_pred             HHhcCC----CCCEEEEecCHHHHHHHHHHHHHHh------CCCCEEEE
Confidence            999963    4899999999999999997776442      23567774

>PRK06260 threonine synthase; Validated

Probab=100.00  E-value=1.4e-33  Score=282.63  Aligned_cols=178  Identities=22%  Similarity=0.283  Sum_probs=149.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+|..+||+|+|++|||||||||.+...+..+++.+...+|+ +|+||||+|+|++|+.+|++|+
T Consensus        64 ~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~  142 (397)
T PRK06260         64 NEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVKTVAC-ASTGNTSASLAAYAARAGLKCY  142 (397)
T ss_pred             CCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEE
Confidence            346899999999998875449999999999999999999887777777777655555 6999999999999999999999


Q ss_pred             EEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHH
Q psy11239         92 IYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI  170 (410)
                      ||||+. ++   +.|+.+|+.|||+|+.++ ++++++++.+.+.+++.   .+|+.++   .|||   .++||+|+++||
T Consensus       143 i~vP~~~~~---~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~---g~y~~~~---~np~---~~~G~~t~a~Ei  209 (397)
T PRK06260        143 VLLPAGKVA---LGKLAQALLHGAKVLEVD-GNFDDALDMVVELAKEG---KIYLLNS---INPF---RLEGQKTIGFEI  209 (397)
T ss_pred             EEEeCCCcc---HHHHHHHHhcCCEEEEEC-CcHHHHHHHHHHHHhhC---CEEeecC---CCch---hhcchhhHHHHH
Confidence            999987 55   589999999999999998 78999988888877653   2443332   1344   468999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK  205 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~  205 (410)
                      ++|+.  +..||+||+|+|+||+++|+...|.++.
T Consensus       210 ~eQl~--~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~  242 (397)
T PRK06260        210 ADQLG--WEVPDRVVLPVGNAGNISAIWKGFKELV  242 (397)
T ss_pred             HHHhC--CCCCCEEEEeCCcHHHHHHHHHHHHHHH
Confidence            99964  3359999999999999999999887654

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=100.00  E-value=1.7e-34  Score=282.51  Aligned_cols=188  Identities=24%  Similarity=0.339  Sum_probs=159.4

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|+...++.+||+|+|+.||+||||+|++.+++..+.+.+.+++| ++|+||||+|+|++|+.+|++|++||
T Consensus        22 ~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~vv-~~SsGN~g~alA~~a~~~G~~~~ivv  100 (324)
T cd01563          22 NTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVKAVA-CASTGNTSASLAAYAARAGIKCVVFL  100 (324)
T ss_pred             CCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCCEEE-EeCCCHHHHHHHHHHHHcCCceEEEE
Confidence            79999999998776458999999999999999999999999999988876655 59999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+..+   +.++++|+.+||+|+.++ ++++++.+.+.+..++.   .+|+ .++.  |+.   ...||.|++.||++|+
T Consensus       101 p~~~~---~~k~~~l~~~GA~Vi~~~-~~~~~~~~~a~~~~~~~---~~~~-~~~~--n~~---~~~g~~t~~~Ei~~q~  167 (324)
T cd01563         101 PAGKA---LGKLAQALAYGATVLAVE-GNFDDALRLVRELAEEN---WIYL-SNSL--NPY---RLEGQKTIAFEIAEQL  167 (324)
T ss_pred             eCCCC---HHHHHHHHHcCCEEEEEC-CcHHHHHHHHHHHHHhc---Ceec-cCCC--Ccc---eecchhhhHHHHHHHc
Confidence            98653   478999999999999996 45888888887776653   4444 3333  222   4579999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhc--------CCCeEEEEccCCCCc
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFIN--------SNFKLVAIESGGISK  401 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--------~~~~vigVe~~g~~~  401 (410)
                      +  +..||+||+|+|||||++|++.++++        ++++||||||.+++.
T Consensus       168 ~--~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~  217 (324)
T cd01563         168 G--WEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAP  217 (324)
T ss_pred             C--CCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCH
Confidence            5  23699999999999999999999975        369999999999863

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PRK06815 hypothetical protein; Provisional

Probab=100.00  E-value=7.1e-35  Score=283.95  Aligned_cols=182  Identities=24%  Similarity=0.293  Sum_probs=147.6

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      .+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+.... +.+..+ ++++|+||||+|+|++|+.+|+||
T Consensus        17 ~i~~TPLv~~~~l~~~~-g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~-vv~aSsGN~g~alA~~a~~~G~~~   94 (317)
T PRK06815         17 QVRVTPLEHSPLLSQHT-GCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQG-VITASSGNHGQGVALAAKLAGIPV   94 (317)
T ss_pred             CCCCCCccccHhHHHhh-CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCce-EEEECCChHHHHHHHHHHHhCCCE
Confidence            45799999999999877 679999999999999999998765544322 222334 455699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.++   +.|+.+|+.|||+|+.++ ++++++...+.+++++.  +.+       +.+||+++ .+.|++|+++|
T Consensus        95 ~i~~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~-------~~~~~~~~~~~~g~~t~a~E  161 (317)
T PRK06815         95 TVYAPEQAS---AIKLDAIRALGAEVRLYG-GDALNAELAARRAAEQQ--GKV-------YISPYNDPQVIAGQGTIGME  161 (317)
T ss_pred             EEEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCE-------EecCCCChhhhcchhHHHHH
Confidence            999999887   589999999999999998 67888888877776653  222       35677665 47899999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++|+.    .||+||+|+|+||+++|+...|.++      .+.++|+.
T Consensus       162 i~~q~~----~~d~vv~~vG~Gg~~~Gi~~~~k~~------~~~~~vig  200 (317)
T PRK06815        162 LVEQQP----DLDAVFVAVGGGGLISGIATYLKTL------SPKTEIIG  200 (317)
T ss_pred             HHHhcC----CCCEEEEECcHHHHHHHHHHHHHHh------CCCCEEEE
Confidence            999964    3899999999999999997776543      23577774

>TIGR02079 THD1 threonine dehydratase

Probab=100.00  E-value=5e-35  Score=293.52  Aligned_cols=175  Identities=21%  Similarity=0.272  Sum_probs=144.5

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHH-HHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA-KFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~-~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+... ++....+ |+++|+||||+++|++|+.+|+||
T Consensus        13 ~i~~TPl~~~~~ls~~~-g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~g-vv~aSsGN~g~a~A~~a~~~G~~~   90 (409)
T TIGR02079        13 VVPHTPLQLNERLSEKY-GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKG-VVCASAGNHAQGFAYACRHLGVHG   90 (409)
T ss_pred             cCCCCCccccHHHHHHh-CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCE-EEEECccHHHHHHHHHHHHcCCCE
Confidence            56799999999999887 67999999999999999999876554432 2333334 555699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEE--eCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLV--QYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIG  167 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~  167 (410)
                      +||||+.++   +.|...++.|||+|+.+  ..++++++++.+.+++++.  +.+       +.+||++| .++||+|++
T Consensus        91 ~iv~p~~~~---~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~--g~~-------~~~~~~~~~~~~g~~ti~  158 (409)
T TIGR02079        91 TVFMPATTP---KQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDH--GGT-------FIPPFDDPRIIEGQGTVA  158 (409)
T ss_pred             EEEECCCCC---HHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc--CCE-------EeCCCCCHhHhhhhHHHH
Confidence            999999988   58999999999985422  2257999999999988764  222       36788877 589999999


Q ss_pred             HHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      .||++|++  + .||+||+|+|+||+++|+...|..
T Consensus       159 ~Ei~~q~~--~-~~D~vv~pvG~GG~~~Gia~~~k~  191 (409)
T TIGR02079       159 AEILDQLP--E-KPDYVVVPVGGGGLISGLTTYLAG  191 (409)
T ss_pred             HHHHHhcC--C-CCCEEEEEecHhHHHHHHHHHHHH
Confidence            99999964  2 499999999999999999887754

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK06260 threonine synthase; Validated

Probab=100.00  E-value=2.3e-34  Score=288.45  Aligned_cols=190  Identities=23%  Similarity=0.311  Sum_probs=161.5

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|...++..+||+|+|++|||||||||++...+..+.+.|.+.+| ++|+||||+|+|++|+++|++|+|||
T Consensus        67 ~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~~vv-~aSsGN~g~alA~~aa~~G~~~~i~v  145 (397)
T PRK06260         67 GTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVKTVA-CASTGNTSASLAAYAARAGLKCYVLL  145 (397)
T ss_pred             CCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCCEEE-EeCCcHHHHHHHHHHHHcCCcEEEEE
Confidence            69999999988777333999999999999999999999999999988887665 49999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+...+  +.|+.+++.+||+|+.++ ++++++.+.+.+..++.   .+|++++.   ||+   ..+|++|+++||++|+
T Consensus       146 P~~~~~--~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~---g~y~~~~~---np~---~~~G~~t~a~Ei~eQl  213 (397)
T PRK06260        146 PAGKVA--LGKLAQALLHGAKVLEVD-GNFDDALDMVVELAKEG---KIYLLNSI---NPF---RLEGQKTIGFEIADQL  213 (397)
T ss_pred             eCCCcc--HHHHHHHHhcCCEEEEEC-CcHHHHHHHHHHHHhhC---CEEeecCC---Cch---hhcchhhHHHHHHHHh
Confidence            975333  378889999999999995 56889888888877664   35665432   444   4689999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~  402 (410)
                      .  +..||+||+|+|+||+++|++.+|++.        .+|||+|||++++.+
T Consensus       214 ~--~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~  264 (397)
T PRK06260        214 G--WEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPI  264 (397)
T ss_pred             C--CCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHH
Confidence            6  336999999999999999999999864        389999999998743

>PRK06721 threonine synthase; Reviewed

Probab=100.00  E-value=5.3e-34  Score=281.29  Aligned_cols=188  Identities=23%  Similarity=0.301  Sum_probs=156.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||++++++.+.. +.+||+|+|++||+||||+|++.+++..++++|.+++|+ +|+||||+++|++|+++|++|+|||
T Consensus        28 ~TPl~~l~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~vV~-aSsGN~G~alA~~aa~~G~~~~vvv  105 (352)
T PRK06721         28 NTPLIPLLNISKQL-GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSEAIIC-ASTGNTSASAAAYAARLGMKCIIVI  105 (352)
T ss_pred             CCCeeEchhhHHHh-CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCEEEE-ECCcHHHHHHHHHHHHCCCcEEEEE
Confidence            89999999988776 579999999999999999999999999999988876654 9999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+...+  +.|+++|+.+||+|+.++ ++++++.+.+.+..++.  + .|+.+ ..  ||+   ...||.|++.||++|+
T Consensus       106 p~~~~~--~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~-~~~~~-~~--n~~---~~~G~~t~~~Ei~eq~  173 (352)
T PRK06721        106 PEGKIA--HGKLAQAVAYGAEIISIE-GNFDDALKAVRNIAAEE--P-ITLVN-SV--NPY---RIEGQKTAAFEICDQL  173 (352)
T ss_pred             CCCCCC--HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhC--C-ceecc-CC--Cch---hhhhhhhHHHHHHHHh
Confidence            975433  378889999999999996 55888888888877665  3 33332 22  333   4678999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHH----hc---CCCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTF----IN---SNFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~----~~---~~~~vigVe~~g~~~~  402 (410)
                      .   ..||+||+|+||||+++|++.++    ++   +.+|||||||++++.+
T Consensus       174 ~---~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~  222 (352)
T PRK06721        174 Q---RAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAI  222 (352)
T ss_pred             C---CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChH
Confidence            5   46999999999999999865444    42   4799999999988643

>TIGR01139 cysK cysteine synthase A

Probab=100.00  E-value=9.6e-35  Score=280.97  Aligned_cols=186  Identities=19%  Similarity=0.139  Sum_probs=149.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++ ...+ +.+||+|+|++|||||||||.+...+..+.+.+.   +.+|+++|+||||+|+|++|+++|+
T Consensus         4 ~~g~TPl~~~~~-~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl   81 (298)
T TIGR01139         4 LIGNTPLVRLNR-IEGC-NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGY   81 (298)
T ss_pred             ccCCCceEEccc-cCCC-CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCC
Confidence            457999999998 4455 5899999999999999999998877666666654   3457778999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS  164 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~  164 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++ ++  ++++++.+.++.++.+ +.++      ..+||+|+.  ..||+
T Consensus        82 ~~~i~vp~~~~---~~k~~~~~~~GA~v~~~~-~~~~~~~~~~~a~~~~~~~~-~~~~------~~~~~~n~~~~~~g~~  150 (298)
T TIGR01139        82 KLILTMPETMS---IERRKLLKAYGAELVLTP-GAEGMKGAIAKAEEIAASTP-NSYF------MLQQFENPANPEIHRK  150 (298)
T ss_pred             eEEEEeCCccC---HHHHHHHHHcCCEEEEEC-CCCCHHHHHHHHHHHHHhCC-CcEE------cccccCCcccHHHHHH
Confidence            99999999987   489999999999999998 54  4678888888776542 2232      355666553  57999


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      |+++||++|++  + .||+||+|+|+||+++|+...|.+.      .++.+|+.-
T Consensus       151 t~~~Ei~~q~~--~-~~d~vv~~vG~Gg~~~Gi~~~~~~~------~~~~~vi~V  196 (298)
T TIGR01139       151 TTGPEIWRDTD--G-KLDAFVAGVGTGGTITGVGEVLKEQ------KPNIKIVAV  196 (298)
T ss_pred             HHHHHHHHHhC--C-CCCEEEEecchhHhHHHHHHHHHhc------CCCCEEEEE
Confidence            99999999964  2 4999999999999999997777543      235677753

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>PRK06450 threonine synthase; Validated

Probab=100.00  E-value=3.1e-34  Score=280.53  Aligned_cols=177  Identities=25%  Similarity=0.325  Sum_probs=147.2

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||++.         .+||+|+|.+|||||||||++..++..+.+.|.+.+ +++|+||+|.|+|++|+++|++|+|||
T Consensus        58 ~TPLv~~---------~~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~~v-v~aSsGN~g~slA~~aa~~G~~~~i~v  127 (338)
T PRK06450         58 RTPLIKK---------GNIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIKQI-SEDSSGNAGASIAAYGAAAGIEVKIFV  127 (338)
T ss_pred             CCCceec---------CCEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCEE-EEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            6898863         379999999999999999999999999998887665 559999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |++.+   +.|+.+|+.+||+|+.++ ++++++.+.    +++.  +.+|+ .+..  ||+   ..+|++|+++||++|+
T Consensus       128 P~~~~---~~k~~~i~~~GA~vi~v~-~~~~~~~~~----a~~~--g~~~~-~~~~--np~---~ieG~kTia~EI~eql  191 (338)
T PRK06450        128 PETAS---GGKLKQIESYGAEVVRVR-GSREDVAKA----AENS--GYYYA-SHVL--QPQ---FRDGIRTLAYEIAKDL  191 (338)
T ss_pred             cCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHH----HHhc--CeEec-cCCC--Ccc---HHHHHHHHHHHHHHHc
Confidence            98654   488999999999999995 557766554    3333  34444 4433  444   4789999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~  402 (410)
                      +  +..||+||+|+|+||+++|++++|++.        .+|||+|||++++..
T Consensus       192 ~--~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~  242 (338)
T PRK06450        192 D--WKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPL  242 (338)
T ss_pred             C--CCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHH
Confidence            5  346999999999999999999999864        379999999997643

>PLN00011 cysteine synthase

Probab=100.00  E-value=1.6e-34  Score=281.85  Aligned_cols=186  Identities=20%  Similarity=0.133  Sum_probs=147.0

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ...+|||++++++.... +.+||+|+|++|||||||||.+...+..+.+.+.   + ..|+++|+||||+|+|++|+.+|
T Consensus        14 ~~g~TPl~~l~~l~~~~-g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G   92 (323)
T PLN00011         14 LIGNTPMVYLNNIVDGC-VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARG   92 (323)
T ss_pred             HhCCCceEEccccCCCC-CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcC
Confidence            45799999999888654 4799999999999999999988877777777663   2 45666799999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~  164 (410)
                      ++|+||||+.++   +.|+++|+.|||+|+.++.. ..++.++++.+++++.+  .+|+      .+||+|+.  ..||.
T Consensus        93 ~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~--~~~~------~~~~~n~~n~~~~~~  161 (323)
T PLN00011         93 YKVILVMPSTMS---LERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTP--GGYI------PQQFENPANPEIHYR  161 (323)
T ss_pred             CeEEEEeCCCCC---HHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCC--CeEE------eccccCCccHHHHHH
Confidence            999999999987   48999999999999999832 24556777777766431  2333      34554331  34799


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++++||++|+.  + .||+||+|+||||+++|+...|.+.      .+.++|+.
T Consensus       162 t~~~EI~~q~~--~-~~D~iv~~vGtGGt~aGi~~~lk~~------~~~~kvig  206 (323)
T PLN00011        162 TTGPEIWRDSA--G-KVDILVAGVGTGGTATGVGKFLKEK------NKDIKVCV  206 (323)
T ss_pred             HHHHHHHHhcC--C-CCCEEEEeCCchHHHHHHHHHHHhh------CCCCEEEE
Confidence            99999999953  2 5999999999999999997776542      24667774

>PRK06608 threonine dehydratase; Provisional

Probab=100.00  E-value=1.8e-34  Score=282.59  Aligned_cols=182  Identities=27%  Similarity=0.307  Sum_probs=147.8

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCC-ceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK-RIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~-~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ..++|||+++++|++.+ +.+||+|+|++||+||||||.+...+..+.+.+.. ..|+++|+||||+++|++|+.+|+||
T Consensus        20 ~i~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~   98 (338)
T PRK06608         20 YLHLTPIVHSESLNEML-GHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKT   98 (338)
T ss_pred             cCcCCCccchHhHHHHh-CCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCE
Confidence            56899999999999887 67999999999999999999988777777776652 45666799999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.++   +.|+++|+.|||+|+.++  +.+++.+++.+ ..+.  + .|      +.+||+++ .++|++|+++|
T Consensus        99 ~vv~p~~~~---~~k~~~l~~~GA~V~~~~--~~~~~~~~a~~-~~~~--~-~~------~~~~~~~~~~~~g~~t~a~E  163 (338)
T PRK06608         99 RIYLPLNTS---KVKQQAALYYGGEVILTN--TRQEAEEKAKE-DEEQ--G-FY------YIHPSDSDSTIAGAGTLCYE  163 (338)
T ss_pred             EEEECCCCC---HHHHHHHHhCCCEEEEEC--CHHHHHHHHHH-HHhC--C-CE------EcCCCCCHHHhccHHHHHHH
Confidence            999999887   589999999999999996  34666666666 3321  2 22      35777665 47899999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++|++   ..||+||+|+|+||+++|+...+..      ..+.++|+.
T Consensus       164 i~~q~~---~~~D~vv~~vG~GGt~~Gi~~~~k~------~~~~~~vig  203 (338)
T PRK06608        164 ALQQLG---FSPDAIFASCGGGGLISGTYLAKEL------ISPTSLLIG  203 (338)
T ss_pred             HHHhcC---CCcCEEEEeechhHHHHHHHHHHHh------cCCCCEEEE
Confidence            999964   2589999999999999999655432      223567774

>PRK06352 threonine synthase; Validated

Probab=100.00  E-value=1.4e-34  Score=285.23  Aligned_cols=175  Identities=21%  Similarity=0.173  Sum_probs=146.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.++ |+++|+||||+|+|++|+.+|++|+
T Consensus        25 ~~G~TPL~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~-vV~aSsGN~G~AlA~~aa~~G~~~~  102 (351)
T PRK06352         25 AEGNTPLIPLPNLSKEL-GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEA-VICASTGNTSAAAAAYATRAGLKAY  102 (351)
T ss_pred             CCCCCCeeEcHhhHHHh-CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCCE-EEEECCcHHHHHHHHHHHHcCCcEE
Confidence            46899999999999887 579999999999999999999888877777777654 5556999999999999999999999


Q ss_pred             EEeccCC-ccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHH
Q psy11239         92 IYIGEND-YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI  170 (410)
                      ||||+.. +   +.|+.+|++|||+|+.++ ++++++.+.+.+++++.   .+|.      .++++...+.||+|+++||
T Consensus       103 ivvp~~~~~---~~k~~~~~a~GA~V~~~~-~~~~~~~~~a~~~~~~~---~~~~------~~~~n~~~~~G~~t~~~EI  169 (351)
T PRK06352        103 IVIPEGKVA---LGKLAQAVMYGADIISIQ-GNFDEALKSVRELAETE---AVTL------VNSVNPYRLEGQKTAAFEI  169 (351)
T ss_pred             EEEeCCCCc---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc---Cccc------ccCCCccceeeHHHHHHHH
Confidence            9999974 4   589999999999999998 78899888888877653   1221      2333222468999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYC  204 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~  204 (410)
                      ++|+.   ..||+||+|+|+||+++|+...|.++
T Consensus       170 ~~Q~~---~~~D~vvv~vG~GG~~~Gi~~~lk~~  200 (351)
T PRK06352        170 CEQLG---SAPDVLAIPVGNAGNISAYWKGFKEW  200 (351)
T ss_pred             HHHcC---CCCCEEEEECCchHHHHHHHHHHHHH
Confidence            99964   36999999999999999998887653

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=100.00  E-value=1.3e-34  Score=281.10  Aligned_cols=183  Identities=25%  Similarity=0.326  Sum_probs=150.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      .+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+....|+++||||||+|+|++|+.+|++|+
T Consensus        14 ~ig~TPl~~~~~l~~~~-g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~   92 (304)
T cd01562          14 VVRRTPLLTSPTLSELL-GAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPAT   92 (304)
T ss_pred             cCCCCCcccchhhHHHh-CCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            56899999999999887 57999999999999999999876665555555534445667999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      +|||+..+   +.|+++|+.|||+|+.++ ++++++++.+.+++++.  +.+|       .+||+++ .+.|++++++||
T Consensus        93 ivvp~~~~---~~k~~~l~~~Ga~vi~~~-~~~~~~~~~a~~la~~~--~~~~-------~~~~~n~~~~~g~~~~~~Ei  159 (304)
T cd01562          93 IVMPETAP---AAKVDATRAYGAEVVLYG-EDFDEAEAKARELAEEE--GLTF-------IHPFDDPDVIAGQGTIGLEI  159 (304)
T ss_pred             EEECCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEE-------eCCCCCcchhccHHHHHHHH
Confidence            99999887   589999999999999998 67899998888887764  2222       4556554 368899999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|++    .||+||+|+||||+++|+...|....      +..+|+.
T Consensus       160 ~~q~~----~~d~vv~~vGtGgt~~Gi~~~lk~~~------~~~kvig  197 (304)
T cd01562         160 LEQVP----DLDAVFVPVGGGGLIAGIATAVKALS------PNTKVIG  197 (304)
T ss_pred             HHhcC----CCCEEEEecCHHHHHHHHHHHHHHhC------CCCEEEE
Confidence            99964    29999999999999999977775421      3567764

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=100.00  E-value=6.6e-34  Score=290.83  Aligned_cols=194  Identities=18%  Similarity=0.166  Sum_probs=157.6

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++++... +.+||+|+|++||+||||+|++.+++..+.+.|.   +..|+++|+||||+++|++|+.+|++|+
T Consensus        11 ~TPl~~~~~l~~~~-~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~   89 (454)
T TIGR01137        11 NTPLVRLNKVSKGI-KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCI   89 (454)
T ss_pred             CCceEEccccCCCC-CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEE
Confidence            89999999998766 5799999999999999999999999999988776   2345669999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HH---HHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LK---EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG  350 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g  350 (410)
                      +|||+..++   .|+.+++.+||+|+.++... ++   ...+.+.++.++. ++ .|+++++.+    +.+...||.|+|
T Consensus        90 iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~-~~-~~~~~~~~~----~~~~~~~~~t~~  160 (454)
T TIGR01137        90 IVLPEKMSN---EKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREI-PG-AHILDQYNN----PSNPLAHYDGTG  160 (454)
T ss_pred             EEeCCCcCH---HHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhC-CC-cEecccCCC----hhhHHHHHHhhH
Confidence            999986543   78999999999999997432 32   2244555555543 23 344433331    222457999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT  404 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~  404 (410)
                      .||++|++   ..||+||+|+|||||++|++.++++.  ++|||||||+++....+
T Consensus       161 ~Ei~~q~~---~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~  213 (454)
T TIGR01137       161 PEILEQCE---GKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQP  213 (454)
T ss_pred             HHHHHHhC---CCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCC
Confidence            99999995   36999999999999999999999864  89999999999886654

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK02991 D-serine dehydratase; Provisional

Probab=100.00  E-value=2.4e-34  Score=288.89  Aligned_cols=189  Identities=16%  Similarity=0.128  Sum_probs=149.7

Q ss_pred             CCCCcCccccccccccC-------CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcC----------------
Q psy11239         13 GRPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK----------------   63 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~~~-------~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~----------------   63 (410)
                      .++|||++++.|++.+|       +.+||+|+|++|| |||||||+++..+..     +++.+.                
T Consensus        73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~  152 (441)
T PRK02991         73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR  152 (441)
T ss_pred             ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence            67999999999988764       1699999999999 999999987655432     223321                


Q ss_pred             ----CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcc
Q psy11239         64 ----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI  139 (410)
Q Consensus        64 ----~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~  139 (410)
                          ...|+++||||||+|+|++|+.+|++|+||||++++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.+
T Consensus       153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~---~~K~~~ir~~GAeVi~~~-~~~~~a~~~A~~la~~~~  228 (441)
T PRK02991        153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADAR---QWKKDKLRSHGVTVVEYE-GDYGVAVEEGRKAAESDP  228 (441)
T ss_pred             hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhcC
Confidence                124666799999999999999999999999999988   589999999999999998 789999999998877541


Q ss_pred             cCCcccccccccCcccccc-ccccchhHHHHHHHhhhhc----C-CCccEEEEecCCCCceeeccccccccccccccccC
Q psy11239        140 LNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQLNFN----F-YNKKYILACVGGGSNALGRPTPIYYCKNISNILKG  213 (410)
Q Consensus       140 ~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~q~~~~----~-~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~  213 (410)
                        ..|      +.+||+++ .++||+|+++||++|++..    + ..||+||+|+|+||+++|+...|.+..     .++
T Consensus       229 --~~~------~~~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~-----~~~  295 (441)
T PRK02991        229 --NCY------FIDDENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAF-----GDH  295 (441)
T ss_pred             --CeE------eCCCCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhc-----CCC
Confidence              223      23555444 5799999999999997532    1 248899999999999999977775421     135


Q ss_pred             ceeEE
Q psy11239        214 SKIFL  218 (410)
Q Consensus       214 ~~v~~  218 (410)
                      ++|+.
T Consensus       296 ~kVig  300 (441)
T PRK02991        296 VHCFF  300 (441)
T ss_pred             CEEEE
Confidence            67774

>KOG1252|consensus

Probab=100.00  E-value=4.9e-34  Score=266.93  Aligned_cols=187  Identities=18%  Similarity=0.130  Sum_probs=155.8

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ++++|||+.++++..-+ .++||+|+|++||+||.|||-+..++..++..+.   + .+++++||||+|+++|++|+.+|
T Consensus        49 liG~TPlv~ln~i~~g~-~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~G  127 (362)
T KOG1252|consen   49 LIGNTPLVKLNKIAGGC-VARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRG  127 (362)
T ss_pred             HhCCCceEEeccccCCc-cceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcC
Confidence            67899999999986554 7899999999999999999987777777776663   3 59999999999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-H---HHHHHHHHHHHhhcccCCcccccccccCccccccc--cc
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-L---KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RD  161 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~  161 (410)
                      +||+++||+..+   .+|...|++|||+||++++.. +   .-++..+.++..+.+  ..|+      ..||.||.  ..
T Consensus       128 yk~i~tmP~~ms---~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~p--na~~------l~Qf~np~Np~~  196 (362)
T KOG1252|consen  128 YKCIITMPEKMS---KEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTP--NAYI------LDQFHNPGNPLA  196 (362)
T ss_pred             ceEEEEechhhh---HHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCC--ChHH------HHHhcCCCCccc
Confidence            999999999988   599999999999999998542 3   337888888877663  2333      35555552  58


Q ss_pred             cchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        162 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      ||.++++|||.|+.   ..+|.||.++|||||++|+      .+.+.++.++++|+.-
T Consensus       197 hy~ttg~EI~~q~~---g~vDi~V~gaGTGGTitgv------GRylke~~~~~kVv~v  245 (362)
T KOG1252|consen  197 HYETTGPEIWRQLD---GKVDIFVAGAGTGGTITGV------GRYLKEQNPNIKVVGV  245 (362)
T ss_pred             ccccccHHHHHHhc---CCCCEEEeccCCCceeech------hHHHHHhCCCCEEEEe
Confidence            99999999999973   4799999999999999999      6667777778888854

>PRK05638 threonine synthase; Validated

Probab=100.00  E-value=8.9e-34  Score=287.76  Aligned_cols=185  Identities=18%  Similarity=0.209  Sum_probs=158.3

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||++++ +...+ +.+||+|+|++|||||||||++..++..+.+.+.+.+++ +|+||||+|+|++|+++|++|+|||
T Consensus        66 ~TPLv~~~-~~~~~-g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~v  142 (442)
T PRK05638         66 GTPLIRAR-ISEKL-GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAANGFIV-ASDGNAAASVAAYSARAGKEAFVVV  142 (442)
T ss_pred             CCcEEccc-chHHh-CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEE
Confidence            69999874 65555 579999999999999999999999999998888877665 9999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |++.+   +.|+.+++.+||+|+.++ ++++++++.+.+..++.   .+|+++++.  ||+   ..+|++|+++||++|+
T Consensus       143 p~~~~---~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~---~~~~~~~~~--np~---~~eG~~t~a~Ei~eq~  210 (442)
T PRK05638        143 PRKVD---KGKLIQMIAFGAKIIRYG-ESVDEAIEYAEELARLN---GLYNVTPEY--NII---GLEGQKTIAFELWEEI  210 (442)
T ss_pred             eCCCC---HHHHHHHHhcCcEEEEEC-CCHHHHHHHHHHHHHhC---CeEecCCCC--Chh---HhhhHHHHHHHHHHHH
Confidence            98644   488999999999999995 66999998888876654   355555443  344   4789999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~  402 (410)
                      .     ||+||+|+|+||+++|++++|++.        .+|||+|||++++..
T Consensus       211 ~-----pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~  258 (442)
T PRK05638        211 N-----PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPI  258 (442)
T ss_pred             C-----cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHH
Confidence            2     999999999999999999999863        379999999887653

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=100.00  E-value=3.5e-34  Score=280.33  Aligned_cols=190  Identities=21%  Similarity=0.199  Sum_probs=154.3

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+++.+||+|+|++|||||||||.+...+..+.+.+.. .|+++||||||+|+|++|+.+|++|+
T Consensus        19 ~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~vv~~SsGN~g~alA~~a~~~G~~~~   97 (324)
T cd01563          19 GEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVK-AVACASTGNTSASLAAYAARAGIKCV   97 (324)
T ss_pred             CCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHHcCCceE
Confidence            45789999999999877568999999999999999999988777777776644 45567999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++|+++||+|+.++ ++++++.+.+.+++++.   .+       +.+||+|+ .+.||.|++.||
T Consensus        98 ivvp~~~~---~~k~~~l~~~GA~Vi~~~-~~~~~~~~~a~~~~~~~---~~-------~~~~~~n~~~~~g~~t~~~Ei  163 (324)
T cd01563          98 VFLPAGKA---LGKLAQALAYGATVLAVE-GNFDDALRLVRELAEEN---WI-------YLSNSLNPYRLEGQKTIAFEI  163 (324)
T ss_pred             EEEeCCCC---HHHHHHHHHcCCEEEEEC-CcHHHHHHHHHHHHHhc---Ce-------eccCCCCcceecchhhhHHHH
Confidence            99999887   589999999999999998 67888888887776642   12       34667766 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|+.  +..||+||+|+||||+++|+...|..........+..+|+.
T Consensus       164 ~~q~~--~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vig  209 (324)
T cd01563         164 AEQLG--WEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVG  209 (324)
T ss_pred             HHHcC--CCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEE
Confidence            99964  22589999999999999999887765332211112456664

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PLN02569 threonine synthase

Probab=100.00  E-value=1.1e-33  Score=287.14  Aligned_cols=191  Identities=14%  Similarity=0.169  Sum_probs=161.1

Q ss_pred             ccccccccccccc-ccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCc
Q psy11239        198 PTPIYYCKNISNI-LKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       198 ~tpl~~~~~L~~~-~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~  272 (410)
                      .|||+++++|.+. ++..+||+|+|.+|||||||||++...+..+.+.|.    ...|+++|+||||.|+|++|+.+|++
T Consensus       133 ~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~  212 (484)
T PLN02569        133 NSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIP  212 (484)
T ss_pred             CCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCe
Confidence            8999999999876 633599999999999999999999998888877654    13466799999999999999999999


Q ss_pred             EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      |+||||++..+  ..++.+++.+||+|+.++ ++++++++.+.+..++.  + +|+.+++   |||   ..+|++|+++|
T Consensus       213 ~~I~vP~~~~~--~~k~~qi~a~GA~Vi~v~-g~~d~a~~~a~e~~~~~--~-~~~~n~~---Np~---~ieG~kT~a~E  280 (484)
T PLN02569        213 SIVFLPADKIS--IAQLVQPIANGALVLSID-TDFDGCMRLIREVTAEL--P-IYLANSL---NSL---RLEGQKTAAIE  280 (484)
T ss_pred             EEEEEcCCCCC--HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHHc--C-CEecCCC---Ccc---hhHhHHHHHHH
Confidence            99999986444  478899999999999995 66999999988877664  3 4555443   444   46899999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK  402 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~  402 (410)
                      |++|+.  +..||+||+|+|+||+++|++++|++.        .+|||+|||++++..
T Consensus       281 I~eQl~--~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl  336 (484)
T PLN02569        281 ILQQFD--WEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPL  336 (484)
T ss_pred             HHHHcC--CCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHH
Confidence            999995  335999999999999999999999863        579999999998654

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=100.00  E-value=2.9e-34  Score=276.75  Aligned_cols=184  Identities=21%  Similarity=0.143  Sum_probs=149.8

Q ss_pred             CCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        14 ~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      .+|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..+.+.+.   +.+|+++|+||||+|+|++|+++|++|
T Consensus         1 g~TPl~~~~~l~~~~-g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~   79 (291)
T cd01561           1 GNTPLVRLNRLSPGT-GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRF   79 (291)
T ss_pred             CCCCEEEccccCCCC-CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeE
Confidence            489999999999876 6799999999999999999988777666766665   245666799999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCH----HHHHHHHHHHHhhcccCCcccccccccCccccccc-cccch-
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV-RDFQS-  164 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~-  164 (410)
                      +||||..++   +.|+++|+.|||+|+.++ +++    +++++.+.+++++. ++ +|      +.+||++|. +.|+. 
T Consensus        80 ~i~vp~~~~---~~k~~~~~~~Ga~v~~~~-~~~~~~~~~~~~~a~~~~~~~-~~-~~------~~~~~~~p~~~~g~~~  147 (291)
T cd01561          80 IIVMPETMS---EEKRKLLRALGAEVILTP-EAEADGMKGAIAKARELAAET-PN-AF------WLNQFENPANPEAHYE  147 (291)
T ss_pred             EEEECCCCC---HHHHHHHHHcCCEEEEeC-CCCcCCHHHHHHHHHHHHhhC-CC-cE------EecCCCCchHHHHHHH
Confidence            999999877   589999999999999998 444    78888888877653 22 23      356676663 56665 


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      |+++||++|++.   .||+||+|+|+||+++|+...|....      +.++|+.-
T Consensus       148 t~~~Ei~~ql~~---~~d~vv~~~G~Gg~~~Gi~~~~~~~~------~~~~vi~V  193 (291)
T cd01561         148 TTAPEIWEQLDG---KVDAFVAGVGTGGTITGVARYLKEKN------PNVRIVGV  193 (291)
T ss_pred             HHHHHHHHHcCC---CCCEEEEeCChHHHHHHHHHHHHHhC------CCCEEEEE
Confidence            999999999752   69999999999999999987775432      35677753

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>PRK08329 threonine synthase; Validated

Probab=100.00  E-value=1.4e-33  Score=277.86  Aligned_cols=180  Identities=24%  Similarity=0.304  Sum_probs=152.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++        +.+||+|+|++|||||||||++..++..+.+.|.+.+|+ +|+||||+|+|++|+++|++|+|||
T Consensus        64 ~Tpl~~~--------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v~v  134 (347)
T PRK08329         64 ITPTVKR--------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVI-DSSGNAALSLALYSLSEGIKVHVFV  134 (347)
T ss_pred             CCccccC--------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCCEEEE-ECCCcHHHHHHHHHHHcCCcEEEEE
Confidence            6888864        258999999999999999999999999999988877655 9999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |++.+   +.|+.+++.+||+|+.++ ++++++...+.++.++.  +.+|+ .++.  |||   ..+|++|+++||++|+
T Consensus       135 p~~~~---~~k~~~~~~~GA~v~~v~-~~~~~~~~~a~~l~~~~--~~~~~-~~~~--np~---~~eG~~t~~~Ei~eql  202 (347)
T PRK08329        135 SYNAS---KEKISLLSRLGAELHFVE-GDRMEVHEEAVKFSKRN--NIPYV-SHWL--NPY---FLEGTKTIAYEIYEQI  202 (347)
T ss_pred             CCCCh---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCeec-cCCC--Cch---hhccchhHHHHHHHHc
Confidence            98644   489999999999999996 55777777777776654  34554 3333  455   4689999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK  402 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~  402 (410)
                      +    .||+||+|+|+||+++|++++|++.        .+|||+|||+++...
T Consensus       203 ~----~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~  251 (347)
T PRK08329        203 G----VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESL  251 (347)
T ss_pred             C----CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchH
Confidence            4    6999999999999999999999863        489999999997654

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=100.00  E-value=3.1e-33  Score=262.91  Aligned_cols=183  Identities=30%  Similarity=0.384  Sum_probs=156.2

Q ss_pred             ccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC--CceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       199 tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      |||++++++.+.. +.+||+|+|+.||+||||+|++.+++..+.+.+.  ...|+++|+||+|.|+|++|+.+|++|++|
T Consensus         1 TPl~~~~~l~~~~-~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~   79 (244)
T cd00640           1 TPLVRLKRLSKLG-GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIV   79 (244)
T ss_pred             CCeeEcccccccc-CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence            7999999888754 6899999999999999999999999999988884  455667999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChh-HHHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT-IVRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~t~g~Ei~~  355 (410)
                      +|...+   +.++++|+.+||+|+.++ ++++++.+.+.+.+++. .+.+ ++      ++|.+ ....|+.+++.||.+
T Consensus        80 ~p~~~~---~~~~~~~~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~-~~~~-~~------~~~~n~~~~~g~~~~~~Ei~~  147 (244)
T cd00640          80 MPEGAS---PEKVAQMRALGAEVVLVP-GDFDDAIALAKELAEED-PGAY-YV------NQFDNPANIAGQGTIGLEILE  147 (244)
T ss_pred             ECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhC-CCCE-ec------CCCCCHHHHHHHHHHHHHHHH
Confidence            998654   488999999999999996 44888988888888774 2344 44      44422 256788899999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEcc
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIES  396 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~  396 (410)
                      |++.  ..||+||+|+||||+++|++.+|++.  .+|||+|||
T Consensus       148 q~~~--~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~  188 (244)
T cd00640         148 QLGG--QKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP  188 (244)
T ss_pred             HcCC--CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence            9962  26999999999999999999999865  899999998

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=100.00  E-value=2.8e-33  Score=263.22  Aligned_cols=173  Identities=29%  Similarity=0.362  Sum_probs=146.7

Q ss_pred             CcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC--CceEEEeCccHHHHHHHHHHHHcCCcEEEE
Q psy11239         16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESIIY   93 (410)
Q Consensus        16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv   93 (410)
                      |||+++++|++.. +.+||+|+|++|||||||||.+...+..+.+.+.  ..+|+++||||||+|+|++|+.+|+||++|
T Consensus         1 TPl~~~~~l~~~~-~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~   79 (244)
T cd00640           1 TPLVRLKRLSKLG-GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIV   79 (244)
T ss_pred             CCeeEcccccccc-CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence            8999999998754 7899999999999999999998877777777763  556777799999999999999999999999


Q ss_pred             eccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHHHH
Q psy11239         94 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  172 (410)
Q Consensus        94 ~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~  172 (410)
                      +|+..+   +.|+++|+.+||+|+.++ ++++++.+.+.+++++. .+ +|      +.+||+|+ .+.|+.++++||++
T Consensus        80 ~p~~~~---~~~~~~~~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~-~~-~~------~~~~~~n~~~~~g~~~~~~Ei~~  147 (244)
T cd00640          80 MPEGAS---PEKVAQMRALGAEVVLVP-GDFDDAIALAKELAEED-PG-AY------YVNQFDNPANIAGQGTIGLEILE  147 (244)
T ss_pred             ECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhC-CC-CE------ecCCCCCHHHHHHHHHHHHHHHH
Confidence            999876   589999999999999998 67899988888888763 12 22      34666555 47899999999999


Q ss_pred             hhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        173 QLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       173 q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      |++..  .||+||+|+|+||+++|+...+.+
T Consensus       148 q~~~~--~~d~ivvp~GtGg~~~G~~~~~~~  176 (244)
T cd00640         148 QLGGQ--KPDAVVVPVGGGGNIAGIARALKE  176 (244)
T ss_pred             HcCCC--CCCEEEEecCccHHHHHHHHHHHH
Confidence            97522  599999999999999999777754

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=100.00  E-value=6.1e-34  Score=284.86  Aligned_cols=190  Identities=15%  Similarity=0.115  Sum_probs=149.9

Q ss_pred             CCCCCcCccccccccccC-------CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcC---------------
Q psy11239         12 KGRPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK---------------   63 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~-------~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~---------------   63 (410)
                      ...+|||++++++++.++       +.+||+|+|++|| |||||||++..++..     +.+.+.               
T Consensus        67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~  146 (431)
T TIGR02035        67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF  146 (431)
T ss_pred             CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence            667999999999988552       4699999999999 999999988765542     333332               


Q ss_pred             -----CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhc
Q psy11239         64 -----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNN  138 (410)
Q Consensus        64 -----~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~  138 (410)
                           +..|+++||||||+|+|++|+.+|+||+||||++++   +.|+++|+.|||+|+.++ ++|+++++.+++++++.
T Consensus       147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~---~~K~~~ir~~GAeVv~~~-~~~~~a~~~A~~la~~~  222 (431)
T TIGR02035       147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAK---QWKKDKLRSKGVTVVEYE-SDYGVAVEEGRKNADAD  222 (431)
T ss_pred             hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc
Confidence                 135666799999999999999999999999999988   599999999999999998 78999999999988764


Q ss_pred             ccCCcccccccccCcccc-ccccccchhHHHHHHHhhhhc----C-CCccEEEEecCCCCceeecccccccccccccccc
Q psy11239        139 ILNSHYLIGTASGPHPYP-TIVRDFQSIIGYEIHQQLNFN----F-YNKKYILACVGGGSNALGRPTPIYYCKNISNILK  212 (410)
Q Consensus       139 ~~~~~~~~~~~~~~~p~~-~~~~~g~~ti~~EI~~q~~~~----~-~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~  212 (410)
                      +  ..|+.      ++++ .+.++||+|++.||++|+...    + ..||+|++|+|+||+++|+...|.+..     .+
T Consensus       223 ~--~~~~~------d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~-----~~  289 (431)
T TIGR02035       223 P--MCYFV------DDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAF-----GD  289 (431)
T ss_pred             C--CeEEC------CCCCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhc-----CC
Confidence            2  22322      2222 124699999999999997521    1 258899999999999999977775421     13


Q ss_pred             CceeEE
Q psy11239        213 GSKIFL  218 (410)
Q Consensus       213 ~~~v~~  218 (410)
                      +++|+.
T Consensus       290 ~vkvi~  295 (431)
T TIGR02035       290 NVHCFF  295 (431)
T ss_pred             CCEEEE
Confidence            577774

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=100.00  E-value=3.6e-34  Score=286.24  Aligned_cols=190  Identities=17%  Similarity=0.128  Sum_probs=149.3

Q ss_pred             hhhcCCCCCCCcCccccccccccCCceEEEeeCCC-CCCCchhhhHHHHHHHHH--HHhcCC------------------
Q psy11239          6 LFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLA--KFLKKK------------------   64 (410)
Q Consensus         6 ~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~-nptGS~K~R~~~~~~~~~--~~~~~~------------------   64 (410)
                      .|.......+|||+++++|++.+|..+||+|+|++ |||||||||++...+...  ++.+.+                  
T Consensus        35 ~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  114 (399)
T PRK08206         35 FHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKL  114 (399)
T ss_pred             HHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhc
Confidence            34334567899999999999988547999999998 599999999765333222  222221                  


Q ss_pred             --ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCC
Q psy11239         65 --RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNS  142 (410)
Q Consensus        65 --~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~  142 (410)
                        .+|+++|+||||+|+|++|+.+|++|+||||+.++   +.|+..|+.|||+|+.++ +++++++..+.+.+++.   .
T Consensus       115 ~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~---~~k~~~i~~~GA~Vi~v~-~~~~~~~~~a~~~~~~~---g  187 (399)
T PRK08206        115 GDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSS---EERVDAIRALGAECIITD-GNYDDSVRLAAQEAQEN---G  187 (399)
T ss_pred             cCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHHc---C
Confidence              25677899999999999999999999999999987   589999999999999998 68999999998887654   2


Q ss_pred             cccccccccCccccc--c-ccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        143 HYLIGTASGPHPYPT--I-VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       143 ~~~~~~~~~~~p~~~--~-~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      +|++.... ..||++  + .++||+|+++||++|+...+..||+||+|+|+||+++|+...|.+
T Consensus       188 ~~~v~~~~-~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~  250 (399)
T PRK08206        188 WVVVQDTA-WEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAE  250 (399)
T ss_pred             CEEecCcc-ccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHH
Confidence            33332211 135654  3 479999999999999763333699999999999999999888754

>PRK07409 threonine synthase; Validated

Probab=100.00  E-value=5.4e-34  Score=281.74  Aligned_cols=174  Identities=20%  Similarity=0.183  Sum_probs=145.5

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+... |+++||||||+++|++|+.+|++|+
T Consensus        28 ~~g~TPl~~~~~l~~~~-g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~-iv~aSsGN~g~alA~~a~~~G~~~~  105 (353)
T PRK07409         28 GEGNTPLIPAPNLSELL-GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAKA-VICASTGNTSASAAAYAARAGLKAF  105 (353)
T ss_pred             CCCCCCEEEchhhHHHh-CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCE-EEEECCcHHHHHHHHHHHHcCCCEE
Confidence            55899999999998876 579999999999999999999887777777766654 5556999999999999999999999


Q ss_pred             EEeccCC-ccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         92 IYIGEND-YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        92 iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      ||||+.. +   +.|+++|+.|||+|+.++ ++++++.+.+.++.++.  + +|+      .+++ || .+.||+|+++|
T Consensus       106 ivvP~~~~~---~~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~l~~~~--~-~~~------~~~~-n~~~~~g~~t~~~E  171 (353)
T PRK07409        106 VLIPEGKIA---LGKLAQAVMYGAEIIQID-GNFDDALEIVRELAEKY--P-VTL------VNSV-NPYRIEGQKTAAFE  171 (353)
T ss_pred             EEEcCCCCc---hhhHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-cee------cCCC-CchhhhhHHHHHHH
Confidence            9999974 4   479999999999999998 78999988888876653  1 332      2333 23 46899999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYC  204 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~  204 (410)
                      |++|+.   ..||+||+|+|+||+++|+..+|.+.
T Consensus       172 I~~q~~---~~~d~iv~~vG~GG~~~Gi~~g~~~~  203 (353)
T PRK07409        172 IVDALG---DAPDYHCIPVGNAGNITAYWKGYKEY  203 (353)
T ss_pred             HHHHhC---CCCCEEEEeCCChHHHHHHHHHHHHH
Confidence            999963   35899999999999999998777543

>PRK05638 threonine synthase; Validated

Probab=100.00  E-value=4.4e-34  Score=289.98  Aligned_cols=173  Identities=18%  Similarity=0.169  Sum_probs=146.0

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||++++ +.+.+ +.+||+|+|++|||||||||.+...+..+.+.+...+++ +|+||||+|+|++|+.+|++|+
T Consensus        63 ~~G~TPLv~~~-~~~~~-g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~  139 (442)
T PRK05638         63 GEGGTPLIRAR-ISEKL-GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAANGFIV-ASDGNAAASVAAYSARAGKEAF  139 (442)
T ss_pred             CCCCCcEEccc-chHHh-CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHHHHHHHHHcCCCEE
Confidence            34679999984 66666 569999999999999999999887777777776655555 6999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||++++   +.|+.+|+.|||+|+.++ ++++++++.+.+.+++.   .+|+      .++|+|| .++|++|+++||
T Consensus       140 i~vp~~~~---~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~---~~~~------~~~~~np~~~eG~~t~a~Ei  206 (442)
T PRK05638        140 VVVPRKVD---KGKLIQMIAFGAKIIRYG-ESVDEAIEYAEELARLN---GLYN------VTPEYNIIGLEGQKTIAFEL  206 (442)
T ss_pred             EEEeCCCC---HHHHHHHHhcCcEEEEEC-CCHHHHHHHHHHHHHhC---CeEe------cCCCCChhHhhhHHHHHHHH
Confidence            99999887   589999999999999998 78999998888876643   2342      3344444 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK  205 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~  205 (410)
                      ++|+.     ||+||+|+|+||+++|+...|.++.
T Consensus       207 ~eq~~-----pD~vv~pvG~Gg~~~Gi~~gfkel~  236 (442)
T PRK05638        207 WEEIN-----PTHVIVPTGSGSYLYSIYKGFKELL  236 (442)
T ss_pred             HHHHC-----cCEEEEeCCchHHHHHHHHHHHHHH
Confidence            99963     8999999999999999999997653

>PRK06450 threonine synthase; Validated

Probab=100.00  E-value=4.8e-34  Score=279.19  Aligned_cols=165  Identities=23%  Similarity=0.232  Sum_probs=135.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      -.++|||++.+         +||+|+|++|||||||||.+...+..+++.+.+.+++ +||||||+|+|++|+.+|++|+
T Consensus        55 geG~TPLv~~~---------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~~vv~-aSsGN~g~slA~~aa~~G~~~~  124 (338)
T PRK06450         55 GEGRTPLIKKG---------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIKQISE-DSSGNAGASIAAYGAAAGIEVK  124 (338)
T ss_pred             CCCCCCceecC---------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCEEEE-ECCcHHHHHHHHHHHHcCCCEE
Confidence            44679999852         6999999999999999999888887888777655555 6999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||++++   +.|+.+|+.|||+|+.++ ++++++.+.    +++.  +.+|       .++|+|| .++|++|+++||
T Consensus       125 i~vP~~~~---~~k~~~i~~~GA~vi~v~-~~~~~~~~~----a~~~--g~~~-------~~~~~np~~ieG~kTia~EI  187 (338)
T PRK06450        125 IFVPETAS---GGKLKQIESYGAEVVRVR-GSREDVAKA----AENS--GYYY-------ASHVLQPQFRDGIRTLAYEI  187 (338)
T ss_pred             EEEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHH----HHhc--CeEe-------ccCCCCccHHHHHHHHHHHH
Confidence            99999988   589999999999999998 788776554    2222  2233       2233333 479999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK  205 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~  205 (410)
                      ++|+.  +..||+||+|+|+||++.|++.+|.++.
T Consensus       188 ~eql~--~~~pD~vvvpvG~Ggll~Gi~~g~~el~  220 (338)
T PRK06450        188 AKDLD--WKIPNYVFIPVSAGTLLLGVYSGFKHLL  220 (338)
T ss_pred             HHHcC--CCCCCEEEEECCchHHHHHHHHHHHHHH
Confidence            99964  3369999999999999999999987654

>PRK06721 threonine synthase; Reviewed

Probab=100.00  E-value=7.2e-34  Score=280.33  Aligned_cols=187  Identities=22%  Similarity=0.215  Sum_probs=150.0

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+++.+... |+++||||||+|+|++|+.+|+||+
T Consensus        25 ~~G~TPl~~l~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~-vV~aSsGN~G~alA~~aa~~G~~~~  102 (352)
T PRK06721         25 MEGNTPLIPLLNISKQL-GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSEA-IICASTGNTSASAAAYAARLGMKCI  102 (352)
T ss_pred             CcCCCCeeEchhhHHHh-CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCE-EEEECCcHHHHHHHHHHHHCCCcEE
Confidence            46899999999999887 579999999999999999999888877777777654 5556999999999999999999999


Q ss_pred             EEeccCC-ccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHH
Q psy11239         92 IYIGEND-YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI  170 (410)
                      ||||+.. +   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.   .+++.+ .  .||+   .++||+|+++||
T Consensus       103 vvvp~~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~---~~~~~~-~--~n~~---~~~G~~t~~~Ei  169 (352)
T PRK06721        103 IVIPEGKIA---HGKLAQAVAYGAEIISIE-GNFDDALKAVRNIAAEE---PITLVN-S--VNPY---RIEGQKTAAFEI  169 (352)
T ss_pred             EEECCCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhC---Cceecc-C--CCch---hhhhhhhHHHHH
Confidence            9999974 4   479999999999999998 78888888888887654   223222 1  1332   468999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeecccccccccccccc-ccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNI-LKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~-~~~~~v~~  218 (410)
                      ++|+.   ..||+||+|+|+||+++|++.++.+.  ++.. .+.++|+.
T Consensus       170 ~eq~~---~~~D~ivv~vG~GG~l~G~~~G~~~~--lk~~~~~~~~vig  213 (352)
T PRK06721        170 CDQLQ---RAPDVLAIPVGNAGNITAYWKGFCEY--EKEKGYKKPRIHG  213 (352)
T ss_pred             HHHhC---CCCCEEEEeCCchHHHHHHHHHHHHH--HHhcCCCCCeEEE
Confidence            99964   25899999999999999976666432  2211 13577774

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=100.00  E-value=3.1e-33  Score=278.55  Aligned_cols=198  Identities=19%  Similarity=0.170  Sum_probs=158.2

Q ss_pred             ccccccccccccccccCceeEEeecCCCC-CchhhHHHHHHHHHHH--HHcC--------------------CCceEEec
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLA--KFLK--------------------KKRIICET  253 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~p-tgS~K~R~a~~~~~~a--~~~g--------------------~~~~v~~~  253 (410)
                      ..|||++++.|++..+..+||+|+|++++ |||||+|++.+.+..+  .+.|                    ....|+++
T Consensus        40 ~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~a  119 (396)
T TIGR03528        40 QPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTA  119 (396)
T ss_pred             cCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEE
Confidence            58999999999988843699999999885 9999999998888754  2222                    01256679


Q ss_pred             CchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCC
Q psy11239        254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTAS  333 (410)
Q Consensus       254 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~  333 (410)
                      |+||||+++|++|+++|++|+||||++.++   .|+..|+.+||+|+.++ ++++++.+.+.+..++.  +.+ ++.+..
T Consensus       120 SsGN~g~alA~~aa~~Gi~~~IvvP~~~~~---~K~~~ir~~GAeVi~~~-~~~~~a~~~a~~~a~~~--g~~-~v~~~~  192 (396)
T TIGR03528       120 TDGNHGRGVAWAANQLGQKSVVYMPKGSAQ---IRLENIRAEGAECTITD-LNYDDAVRLAWKMAQEN--GWV-MVQDTA  192 (396)
T ss_pred             CccHHHHHHHHHHHHcCCCEEEEEeCCCcH---HHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--CcE-eecccc
Confidence            999999999999999999999999986554   78999999999999995 45999999888887765  344 443222


Q ss_pred             CCCCChh---HHHhhhhhHHHHHHHhhhhcC-CCCCEEEEccCchhHHHHHHHHHhcC----CCeEEEEccCCCCcC
Q psy11239        334 GPHPYPT---IVRDFQSIIGYEIHQQLNFNF-YNKKYILACVGGGSNALGIFYTFINS----NFKLVAIESGGISKK  402 (410)
Q Consensus       334 ~~~~~~~---~~~~g~~t~g~Ei~~q~~~~~-~~~d~iv~~vGtGg~~~Gi~~~~~~~----~~~vigVe~~g~~~~  402 (410)
                      + ++|++   .+++||+|++.||++|++..+ ..||+||+|+|+||+++|++.++++.    .+|||+|||++++..
T Consensus       193 ~-~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l  268 (396)
T TIGR03528       193 W-EGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCL  268 (396)
T ss_pred             c-cccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchH
Confidence            1 34532   267899999999999996322 36999999999999999998888532    469999999998754

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=100.00  E-value=7.4e-33  Score=274.12  Aligned_cols=197  Identities=20%  Similarity=0.211  Sum_probs=158.5

Q ss_pred             ccccccccccccccccCceeEEeecCCCC-CchhhHHHHHHHHHHHHHc-----------------------CCCceEEe
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLAKFL-----------------------KKKRIICE  252 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~p-tgS~K~R~a~~~~~~a~~~-----------------------g~~~~v~~  252 (410)
                      ..|||++++.|...++..+||+|+|++|+ +||||+|++.+.+..+...                       +.. .|++
T Consensus        21 ~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vv~   99 (376)
T TIGR01747        21 RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQA-TFAT   99 (376)
T ss_pred             CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCC-EEEE
Confidence            58999999999888833699999999985 8999999998887655321                       233 4566


Q ss_pred             cCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCC
Q psy11239        253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTA  332 (410)
Q Consensus       253 ~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~  332 (410)
                      +|+||||+++|++|+.+|++|+||||++.+.   .|+..|+.+||+|+.++ ++++++.+.+.+..++.  +. |++.+.
T Consensus       100 aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~---~k~~~i~~~GAeVi~v~-~~~~~a~~~a~~~~~~~--g~-~~~~~~  172 (376)
T TIGR01747       100 ATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQ---ERVENILNLGAECTITD-MNYDDTVRLAMQMAQQH--GW-VVVQDT  172 (376)
T ss_pred             ECccHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--Cc-EEeccc
Confidence            9999999999999999999999999986543   88999999999999995 55999988888877665  33 444321


Q ss_pred             CCCCCChh---HHHhhhhhHHHHHHHhhhhc-CCCCCEEEEccCchhHHHHHHHHHhcC----CCeEEEEccCCCCcC
Q psy11239        333 SGPHPYPT---IVRDFQSIIGYEIHQQLNFN-FYNKKYILACVGGGSNALGIFYTFINS----NFKLVAIESGGISKK  402 (410)
Q Consensus       333 ~~~~~~~~---~~~~g~~t~g~Ei~~q~~~~-~~~~d~iv~~vGtGg~~~Gi~~~~~~~----~~~vigVe~~g~~~~  402 (410)
                      .+ ++|++   .+.+||+|++.||++|++.. +..||+||+|+|+||+++|++.++++.    .++||+|||++++..
T Consensus       173 ~~-~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~  249 (376)
T TIGR01747       173 AW-EGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCL  249 (376)
T ss_pred             cc-cccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHH
Confidence            11 23322   26899999999999999621 247999999999999999999988653    479999999999864

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>PRK08329 threonine synthase; Validated

Probab=100.00  E-value=1.4e-33  Score=277.78  Aligned_cols=179  Identities=22%  Similarity=0.259  Sum_probs=143.3

Q ss_pred             CCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEE
Q psy11239         14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY   93 (410)
Q Consensus        14 ~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv   93 (410)
                      +.|||+++        +.+||+|+|++|||||||||.+...+..+++.+.+.+++ +|+||||+|+|++|+.+|++|+||
T Consensus        63 g~Tpl~~~--------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v~  133 (347)
T PRK08329         63 PITPTVKR--------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVI-DSSGNAALSLALYSLSEGIKVHVF  133 (347)
T ss_pred             CCCccccC--------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCCEEEE-ECCCcHHHHHHHHHHHcCCcEEEE
Confidence            56999986        248999999999999999999888877787777755555 699999999999999999999999


Q ss_pred             eccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHHHHh
Q psy11239         94 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ  173 (410)
Q Consensus        94 ~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI~~q  173 (410)
                      ||++++   +.|+.+|+.|||+|+.++ ++++++.+.+.+++++.  +.+| +.+  +.|||   .++|++|+++||++|
T Consensus       134 vp~~~~---~~k~~~~~~~GA~v~~v~-~~~~~~~~~a~~l~~~~--~~~~-~~~--~~np~---~~eG~~t~~~Ei~eq  201 (347)
T PRK08329        134 VSYNAS---KEKISLLSRLGAELHFVE-GDRMEVHEEAVKFSKRN--NIPY-VSH--WLNPY---FLEGTKTIAYEIYEQ  201 (347)
T ss_pred             ECCCCh---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCee-ccC--CCCch---hhccchhHHHHHHHH
Confidence            999887   589999999999999998 67788877777776653  2223 221  12444   468999999999999


Q ss_pred             hhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeE
Q psy11239        174 LNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIF  217 (410)
Q Consensus       174 ~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~  217 (410)
                      ++    .||+||+|+|+||+++|+..+|.++..+..-.+..+++
T Consensus       202 l~----~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii  241 (347)
T PRK08329        202 IG----VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLV  241 (347)
T ss_pred             cC----CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence            64    59999999999999999999997754322111234666

>KOG1251|consensus

Probab=100.00  E-value=1.7e-33  Score=251.44  Aligned_cols=184  Identities=20%  Similarity=0.288  Sum_probs=158.5

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      -||.+.+..+.+.. +.+||+|+|.+|.+|+||.|+|++.+..+. ++..+++|+ .||||||+|+|++|+.+|+|++||
T Consensus        25 kTpVlTS~~ln~~~-g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvit-hSSGNHaqAlalaAk~~giPa~IV  102 (323)
T KOG1251|consen   25 KTPVLTSENLNEKV-GRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVIT-HSSGNHAQALALAAKILGIPATIV  102 (323)
T ss_pred             cCceechhhHHHHh-hhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEe-ecCCcHHHHHHHHHHhcCCCeEEE
Confidence            57777788887777 679999999999999999999999988766 666778877 999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||.+.+.   .|+..++.|||+|+++++. .+++-+.+.+..++.  +.+.+       |||++. +++|++|++.|+++
T Consensus       103 vP~~AP~---~Kv~a~~~Yga~ii~~e~~-~~sRE~va~~ltee~--g~~~i-------~Py~~p~vIaGqgTiA~Elle  169 (323)
T KOG1251|consen  103 VPKDAPI---CKVAATRGYGANIIFCEPT-VESRESVAKDLTEET--GYYLI-------HPYNHPSVIAGQGTIALELLE  169 (323)
T ss_pred             ecCCChH---HHHHHHHhcCceEEEecCc-cchHHHHHHHHHHhc--CcEEe-------CCCCCcceeeccchHHHHHHH
Confidence            9987665   8899999999999999643 445555666666765  34444       899877 89999999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGIS  400 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~  400 (410)
                      |.+    .+|++|+|+|+||+++|++...+.  ++++|++|||++.+
T Consensus       170 qVg----~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~  212 (323)
T KOG1251|consen  170 QVG----EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAAD  212 (323)
T ss_pred             hhC----ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccc
Confidence            994    899999999999999999888875  49999999998765

>KOG1395|consensus

Probab=100.00  E-value=8.8e-34  Score=264.68  Aligned_cols=201  Identities=47%  Similarity=0.783  Sum_probs=183.5

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTA   80 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A   80 (410)
                      |+|.+|+. +++|||||++.++|.+.++ +.+||+|+|++||+||+|..+++.+++++++++++.+|+++++|.||.|+|
T Consensus       110 ee~~eiy~-y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA  188 (477)
T KOG1395|consen  110 EEFLEIYK-YLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATA  188 (477)
T ss_pred             HHHHHHHH-HcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHH
Confidence            66777776 8999999999999999987 899999999999999999999999999999999999999988899999999


Q ss_pred             HHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhcccCCcccccccccCcccccc
Q psy11239         81 TSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI  158 (410)
Q Consensus        81 ~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  158 (410)
                      .+|++||+.|+|+|-..+-++++-|.-+||.+||+|+.|++|.  +.++..++.+.|..+...++|.+++..++|||...
T Consensus       189 ~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~  268 (477)
T KOG1395|consen  189 TACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTV  268 (477)
T ss_pred             HHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHH
Confidence            9999999999999998888888899999999999999999875  88999999999998877889999999999999866


Q ss_pred             ccccchhHHHHHHH-hhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        159 VRDFQSIIGYEIHQ-QLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       159 ~~~g~~ti~~EI~~-q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      +..-+.+|+-|--. |++..+..||.||.|+|+|++..|+..||++
T Consensus       269 vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~  314 (477)
T KOG1395|consen  269 VRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR  314 (477)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc
Confidence            67788899887543 4555667899999999999999999999986

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=100.00  E-value=1.5e-32  Score=267.21  Aligned_cols=195  Identities=22%  Similarity=0.177  Sum_probs=152.1

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCC--chhhHHHHHHHHHHHHHcCCCceEEec--CchHHHHHHHHHHHHcC
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLLN  270 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt--gS~K~R~a~~~~~~a~~~g~~~~v~~~--ssGN~g~a~A~~a~~~G  270 (410)
                      .+..|||++++.++... +.+||+|+|++||+  ||||+|++.+++..++++|.+.+|+ +  |+||||+|+|++|+++|
T Consensus         4 ~~~~TPl~~~~~l~~~~-g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~-~g~ssGN~g~alA~~a~~~G   81 (311)
T TIGR01275         4 IPWPTPIQYLPRISREI-GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVIT-VGAIQSNHARATALAAKKLG   81 (311)
T ss_pred             CCCCCcceechhhhhhc-CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEE-cCCchhHHHHHHHHHHHHhC
Confidence            45799999999888776 68999999999998  9999999999999999888877665 6  56999999999999999


Q ss_pred             CcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH---ccCCCceEEecCCCCCCCChhHHHhhhh
Q psy11239        271 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWS---NNILNSHYLIGTASGPHPYPTIVRDFQS  347 (410)
Q Consensus       271 ~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~  347 (410)
                      ++|++|||+....  ..+..+++.+||+|+.++.+++++..+.+.+..+   +.++..+++..++.  +++   -..|+.
T Consensus        82 ~~~~ivvp~~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~---~~~g~~  154 (311)
T TIGR01275        82 LDAVLVLREKEEL--NGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGS--NSL---GTLGYV  154 (311)
T ss_pred             CceEEEecCCccC--CCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCC--cHH---HHHHHH
Confidence            9999999975333  3567778999999999875445544444444332   23112333434433  332   245666


Q ss_pred             hHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCC
Q psy11239        348 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGI  399 (410)
Q Consensus       348 t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~  399 (410)
                      +++.||++|++. ...||+||+|+|||||++|++.+|++.  +++||||||+.+
T Consensus       155 ~~~~EI~~q~~~-~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~  207 (311)
T TIGR01275       155 EAVLEIATQLES-EVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRF  207 (311)
T ss_pred             HHHHHHHHHHhc-CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            799999999951 136999999999999999999999864  889999998765

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>KOG1251|consensus

Probab=100.00  E-value=2.3e-33  Score=250.70  Aligned_cols=182  Identities=20%  Similarity=0.258  Sum_probs=151.4

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ....||.+.+.+|.+.. +.+||+|||.+|.+||||.|+++..+...+ +++++++|+ .||||||+|+|++|+.+|+||
T Consensus        22 ~ihkTpVlTS~~ln~~~-g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvit-hSSGNHaqAlalaAk~~giPa   99 (323)
T KOG1251|consen   22 FIHKTPVLTSENLNEKV-GRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVIT-HSSGNHAQALALAAKILGIPA   99 (323)
T ss_pred             hhccCceechhhHHHHh-hhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEe-ecCCcHHHHHHHHHHhcCCCe
Confidence            55799999999999887 789999999999999999999987776666 555666666 699999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+++|.   -|...++.|||+|+.+++ +-+++-+.+.++.++.         +..-.+||++| +++||+|++.|
T Consensus       100 ~IVvP~~AP~---~Kv~a~~~Yga~ii~~e~-~~~sRE~va~~ltee~---------g~~~i~Py~~p~vIaGqgTiA~E  166 (323)
T KOG1251|consen  100 TIVVPKDAPI---CKVAATRGYGANIIFCEP-TVESRESVAKDLTEET---------GYYLIHPYNHPSVIAGQGTIALE  166 (323)
T ss_pred             EEEecCCChH---HHHHHHHhcCceEEEecC-ccchHHHHHHHHHHhc---------CcEEeCCCCCcceeeccchHHHH
Confidence            9999999995   899999999999999984 3334444566666654         22457999999 69999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      +++|.+    ..|.+|+|+|+||+++|+..-.   ..|+   |+++||.
T Consensus       167 lleqVg----~iDalfvpvgGGGllSgvAlaa---~~l~---P~i~vy~  205 (323)
T KOG1251|consen  167 LLEQVG----EIDALFVPVGGGGLLSGVALAA---KSLK---PSIEVYA  205 (323)
T ss_pred             HHHhhC----ccceEEEeecCcchhhHHHHHH---hccC---CCcEEEE
Confidence            999964    5799999999999999984322   2333   5789995

>KOG1252|consensus

Probab=100.00  E-value=2.3e-33  Score=262.40  Aligned_cols=195  Identities=20%  Similarity=0.180  Sum_probs=167.2

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .||++.+.+..... .++|++|+|.+||+||.|||-++.|+..|++.|.    +.+++|+||||+|.++|++|+..|++|
T Consensus        52 ~TPlv~ln~i~~g~-~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~  130 (362)
T KOG1252|consen   52 NTPLVKLNKIAGGC-VARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKC  130 (362)
T ss_pred             CCceEEeccccCCc-cceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceE
Confidence            79999988885443 7999999999999999999999999999999886    478899999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHH---HHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKE---AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSII  349 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  349 (410)
                      +++||+...   +.++..+++|||+|+.+|... ++.   ++..+.++..+.  ...|+..++.||. .   ...||.|+
T Consensus       131 i~tmP~~ms---~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~--pna~~l~Qf~np~-N---p~~hy~tt  201 (362)
T KOG1252|consen  131 IITMPEKMS---KEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKT--PNAYILDQFHNPG-N---PLAHYETT  201 (362)
T ss_pred             EEEechhhh---HHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhC--CChHHHHHhcCCC-C---cccccccc
Confidence            999998644   478899999999999997433 333   778888877776  3455666666532 1   35899999


Q ss_pred             HHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCcc
Q psy11239        350 GYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRTA  405 (410)
Q Consensus       350 g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~~  405 (410)
                      |.||++|+.   ..+|.+|.++|||||++|+.+++++.  +++|++|||.+|.+.++.
T Consensus       202 g~EI~~q~~---g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~  256 (362)
T KOG1252|consen  202 GPEIWRQLD---GKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGG  256 (362)
T ss_pred             cHHHHHHhc---CCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCC
Confidence            999999995   78999999999999999999999875  999999999999987654

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=100.00  E-value=2.8e-32  Score=264.81  Aligned_cols=198  Identities=21%  Similarity=0.205  Sum_probs=154.9

Q ss_pred             cccccccccccccc-CceeEEeecCCCCC---chhhHHHHHHHHHHHHHcCCCceEEec--CchHHHHHHHHHHHHcCCc
Q psy11239        199 TPIYYCKNISNILK-GSKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       199 tpl~~~~~L~~~~~-~~~v~~K~e~~~pt---gS~K~R~a~~~~~~a~~~g~~~~v~~~--ssGN~g~a~A~~a~~~G~~  272 (410)
                      |||+++++|...++ +.+||+|+|++||+   ||||+|++..++..+.+.|.+.+|+ +  |+||||+|+|++|+.+|++
T Consensus         1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~-~ggs~GN~g~alA~~a~~~G~~   79 (307)
T cd06449           1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVT-VGGIQSNHTRQVAAVAAKLGLK   79 (307)
T ss_pred             CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEE-CCCchhHHHHHHHHHHHHcCCe
Confidence            79999998887664 47999999999999   5679999999999998888877665 6  6899999999999999999


Q ss_pred             EEEEEcCCCcc-----chhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCceEEe-cCCCCCCCChhHHH
Q psy11239        273 SIIYIGENDYK-----RQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLI-GTASGPHPYPTIVR  343 (410)
Q Consensus       273 ~~vv~p~~~~~-----~~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  343 (410)
                      |++|||+..+.     ....|+.+++.+||+|+.++...   .+++..++.+...++. +..|++ ++... +++   ..
T Consensus        80 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~  154 (307)
T cd06449          80 CVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKG-GKPYVIPAGGSE-HPL---GG  154 (307)
T ss_pred             EEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcC-CceEEecCCCCC-Ccc---cH
Confidence            99999976442     11367889999999999996432   2334444455444432 233443 33221 333   35


Q ss_pred             hhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        344 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       344 ~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      .|+.|++.||++|++..+..||+||+|+|||||++|++.+|++.  ++|||+|||+++...
T Consensus       155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~  215 (307)
T cd06449         155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEK  215 (307)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHH
Confidence            68999999999999744557999999999999999999999864  899999999998654

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=100.00  E-value=5.3e-33  Score=276.93  Aligned_cols=186  Identities=19%  Similarity=0.162  Sum_probs=145.4

Q ss_pred             hcCCCCCCCcCccccccccccCCceEEEeeCCCCC-CCchhhhHHHHHHHHH--HHh-----------------c---CC
Q psy11239          8 YNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLA--KFL-----------------K---KK   64 (410)
Q Consensus         8 ~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~np-tGS~K~R~~~~~~~~~--~~~-----------------~---~~   64 (410)
                      .....+.+|||+++++|++.+|..+||+|+|++|+ |||||+|++...+...  ++.                 .   ..
T Consensus        34 ~~~~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~  113 (396)
T TIGR03528        34 QSFPGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGD  113 (396)
T ss_pred             hcCCCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccC
Confidence            44456689999999999998854799999999885 9999999876554432  111                 1   11


Q ss_pred             ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcc
Q psy11239         65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHY  144 (410)
Q Consensus        65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~  144 (410)
                      ..|+++|+||||+++|++|+.+|+||+||||++++   +.|+..|+.|||+|+.++ ++++++.+.+.+++++.   .++
T Consensus       114 ~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~---~~K~~~ir~~GAeVi~~~-~~~~~a~~~a~~~a~~~---g~~  186 (396)
T TIGR03528       114 ITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSA---QIRLENIRAEGAECTITD-LNYDDAVRLAWKMAQEN---GWV  186 (396)
T ss_pred             cEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCc---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc---CcE
Confidence            25666799999999999999999999999999987   589999999999999998 68999999988887653   233


Q ss_pred             cccccccCccccc--c-ccccchhHHHHHHHhhhhcC-CCccEEEEecCCCCceeeccccc
Q psy11239        145 LIGTASGPHPYPT--I-VRDFQSIIGYEIHQQLNFNF-YNKKYILACVGGGSNALGRPTPI  201 (410)
Q Consensus       145 ~~~~~~~~~p~~~--~-~~~g~~ti~~EI~~q~~~~~-~~~d~iv~~vG~Gg~~~G~~tpl  201 (410)
                      ++.+. ..+||++  + .++||+|+++||++|++..+ ..||+||+|+|+||++.|+...+
T Consensus       187 ~v~~~-~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~  246 (396)
T TIGR03528       187 MVQDT-AWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYF  246 (396)
T ss_pred             eeccc-cccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHH
Confidence            33221 1145654  2 46899999999999975322 25999999999999998885544

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=100.00  E-value=3.8e-33  Score=285.25  Aligned_cols=177  Identities=18%  Similarity=0.107  Sum_probs=141.8

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..+.+.+.   +.+|+++||||||+|+|++|+.+|+
T Consensus         8 ~~~~TPl~~~~~l~~~~-~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~   86 (454)
T TIGR01137         8 LIGNTPLVRLNKVSKGI-KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGY   86 (454)
T ss_pred             hcCCCceEEccccCCCC-CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence            45799999999999876 6799999999999999999988777667766654   3467777999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-HHH---HHHHHHHHHhhcccCCcccccccccCccccccc--ccc
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKE---AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDF  162 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g  162 (410)
                      +|+||||+.++   +.|+.+|+.|||+|+.++... +++   .++.+.++.++. .+ .|      +++||+++.  ..|
T Consensus        87 ~~~iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~-~~-~~------~~~~~~~~~~~~~~  155 (454)
T TIGR01137        87 KCIIVLPEKMS---NEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREI-PG-AH------ILDQYNNPSNPLAH  155 (454)
T ss_pred             eEEEEeCCCcC---HHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhC-CC-cE------ecccCCChhhHHHH
Confidence            99999999887   589999999999999997321 332   244555555442 12 22      245665552  368


Q ss_pred             chhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        163 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       163 ~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      |+|+|+||++|++  + .||+||+|+||||+++|+...|.+
T Consensus       156 ~~t~~~Ei~~q~~--~-~~d~vv~~vG~Gg~~~G~~~~~~~  193 (454)
T TIGR01137       156 YDGTGPEILEQCE--G-KLDMFVAGAGTGGTITGIARYLKE  193 (454)
T ss_pred             HHhhHHHHHHHhC--C-CCCEEEEecCchHHHHHHHHHHHh
Confidence            9999999999964  2 499999999999999999877754

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR00260 thrC threonine synthase

Probab=100.00  E-value=1.3e-32  Score=269.81  Aligned_cols=190  Identities=15%  Similarity=0.136  Sum_probs=158.4

Q ss_pred             ccccccccccccccccCc-eeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~-~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      ..||+++++++.... +. +||+|+|++|||||||||++.+++..+.+.+...+| ++|+||||+|+|++|+.+|++|+|
T Consensus        22 g~TPl~~~~~l~~~~-g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~vv-~aSsGN~g~a~A~~a~~~g~~~~v   99 (328)
T TIGR00260        22 GVTPLFRSPALVANV-GIKNLYVLELFHNPTLSFKDRGMAVALTKALELGNDTVL-CASTGNTGAAAAAYAGKAGVKVVI   99 (328)
T ss_pred             CCccCccchHHHHhc-CCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCCEEE-EeCCcHHHHHHHHHhccCCCcEEE
Confidence            489999999888776 45 999999999999999999999999888888876655 599999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ  355 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~  355 (410)
                      |||+...+  +.|+..++.+||+|+.++ ++++++.+.+.+..++.  . .|..+ ..|.+|+   ...||.|+++||++
T Consensus       100 ~~p~~~~s--~~k~~~~~~~GA~Vi~~~-~~~~~~~~~~~~~~~~~--~-~~~~~-~~n~~~~---~~~g~~t~~~Ei~~  169 (328)
T TIGR00260       100 LYPAGKIS--LGKLAQALGYNAEVVAID-GNFDDAQRLVKQLFGDK--E-ALGLN-SVNSIPY---RLEGQKTYAFEAVE  169 (328)
T ss_pred             EECCCCCC--HHHHHHHHhcCcEEEEec-CCHHHHHHHHHHHHhhc--C-eeecc-cCCCCCe---EeeeehhHHHHHHH
Confidence            99986234  488999999999999996 56888888888877654  2 33332 2221244   36788999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC-------CCeEEEEccCCCC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS-------NFKLVAIESGGIS  400 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-------~~~vigVe~~g~~  400 (410)
                      |++  +..||+||+|+|+||+++|++.+|++.       .++|++|||++++
T Consensus       170 q~~--~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~  219 (328)
T TIGR00260       170 QLG--WEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAA  219 (328)
T ss_pred             HhC--CCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCC
Confidence            995  236999999999999999999999862       5699999999984

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>KOG1395|consensus

Probab=100.00  E-value=5.4e-33  Score=259.43  Aligned_cols=213  Identities=46%  Similarity=0.779  Sum_probs=196.2

Q ss_pred             eecccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        195 LGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|.++||++.++|.++.. +.+||+|+|++||+||+|..++..++++++++|++.+|+|.++|.||.|+|.+|+++|++|
T Consensus       119 ~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C  198 (477)
T KOG1395|consen  119 LGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDC  198 (477)
T ss_pred             cCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCce
Confidence            478999999999998876 7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY  351 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~  351 (410)
                      +|+|-..+..+|..|+.+||.+||+|+.+++|.  ++++..++.+.+..+-+..+|++++..+||||+..+...++++|.
T Consensus       199 ~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~  278 (477)
T KOG1395|consen  199 TVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGK  278 (477)
T ss_pred             EEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhH
Confidence            999998888999999999999999999999887  999999999999888666799999999999999988888999999


Q ss_pred             HHHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCccCC
Q psy11239        352 EIHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRTASR  407 (410)
Q Consensus       352 Ei~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~~~~  407 (410)
                      |-..|.. ..+..||+||.|+|+|++.+|++.-|.+. .+++||||..+-.+..+++.
T Consensus       279 Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~dk~v~~igveaagdg~dtp~hs  336 (477)
T KOG1395|consen  279 ETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRDKSVGMIGVEAAGDGVDTPKHS  336 (477)
T ss_pred             HHHHHHHHHhCCCCCeEEEeccCCCccccccchhhccchhheeeeeecccccCCcchh
Confidence            9887766 45789999999999999999999888866 89999999998887766543

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=100.00  E-value=1.2e-32  Score=272.71  Aligned_cols=184  Identities=20%  Similarity=0.178  Sum_probs=144.5

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCC-CCchhhhHHHHHHHHHHHh-------------------c---CCceEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLAKFL-------------------K---KKRIIC   68 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~np-tGS~K~R~~~~~~~~~~~~-------------------~---~~~~v~   68 (410)
                      -+.+|||+++++|++.+|..+||+|+|++|+ +||||+|++...+......                   .   ....|+
T Consensus        19 ~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv   98 (376)
T TIGR01747        19 GYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFA   98 (376)
T ss_pred             CCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEE
Confidence            4489999999999998854799999999985 8999999775544433221                   1   023555


Q ss_pred             EeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccc
Q psy11239         69 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGT  148 (410)
Q Consensus        69 ~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (410)
                      ++|+||||+|+|++|+.+|+||+||||++++   +.|+.+|+.|||+|+.++ ++++++.+.+.++.++.   .+|+...
T Consensus        99 ~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~---~~k~~~i~~~GAeVi~v~-~~~~~a~~~a~~~~~~~---g~~~~~~  171 (376)
T TIGR01747        99 TATDGNHGRGVAWAAQQLGQKAVVYMPKGSA---QERVENILNLGAECTITD-MNYDDTVRLAMQMAQQH---GWVVVQD  171 (376)
T ss_pred             EECccHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc---CcEEecc
Confidence            5799999999999999999999999999988   589999999999999998 78999988888877653   2343321


Q ss_pred             cccCccccc--c-ccccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceeeccccccc
Q psy11239        149 ASGPHPYPT--I-VRDFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       149 ~~~~~p~~~--~-~~~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                       +..+||++  | .++||+|+++||++|+.. .+..||+||+|+|+||+++|+...+.+
T Consensus       172 -~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~  229 (376)
T TIGR01747       172 -TAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVD  229 (376)
T ss_pred             -ccccccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHH
Confidence             11134543  3 479999999999999742 123699999999999999999766543

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=1.2e-31  Score=263.47  Aligned_cols=200  Identities=21%  Similarity=0.236  Sum_probs=159.7

Q ss_pred             cccccccccccccccC-ceeEEeecCCCCC---chhhHHHHHHHHHHHHHcCCCceEEec--CchHHHHHHHHHHHHcCC
Q psy11239        198 PTPIYYCKNISNILKG-SKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLLNL  271 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~-~~v~~K~e~~~pt---gS~K~R~a~~~~~~a~~~g~~~~v~~~--ssGN~g~a~A~~a~~~G~  271 (410)
                      .|||++++++....+. .+||+|+|++||+   ||||+|++..++..+.+.|...+++ +  |+||||+|+|++|+++|+
T Consensus        15 ~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs-~G~s~GN~g~alA~aa~~~G~   93 (337)
T PRK12390         15 PTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVS-IGGVQSNHTRQVAAVAAHLGM   93 (337)
T ss_pred             CCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEE-eCCCccHHHHHHHHHHHHcCC
Confidence            8999999988877633 7999999999987   7889999999999999999977665 5  889999999999999999


Q ss_pred             cEEEEEcCCCcc-----chhhhHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHH
Q psy11239        272 ESIIYIGENDYK-----RQNINVKKIKLLGGTVYLVQYG---NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR  343 (410)
Q Consensus       272 ~~~vv~p~~~~~-----~~~~~~~~~~~~Ga~v~~v~~g---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (410)
                      +|++|||+..+.     .+..|+.+++.+||+|+.++.+   .++++..++.+.+++.. +..|.+.....+|++   ..
T Consensus        94 ~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~  169 (337)
T PRK12390         94 KCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAG-GKPYAIPAGASDHPL---GG  169 (337)
T ss_pred             eEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCC-CceEEeCCcCCCCCc---cc
Confidence            999998754321     1235788999999999999643   14467777777766642 345644332222444   24


Q ss_pred             hhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        344 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       344 ~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      .|+.+++.||++|+++.+..||+||+|+|||||++|++.+|++.  ++|||||||+++...
T Consensus       170 ~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~  230 (337)
T PRK12390        170 LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQ  230 (337)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHH
Confidence            68888899999997644557999999999999999999999875  799999999988654

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=100.00  E-value=1.3e-31  Score=262.55  Aligned_cols=196  Identities=20%  Similarity=0.209  Sum_probs=153.5

Q ss_pred             ccccccccccccccccCceeEEeecCCCCC--chhhHHHHHHHHHHHHHcCCCceEEecC--chHHHHHHHHHHHHcCCc
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICETG--AGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt--gS~K~R~a~~~~~~a~~~g~~~~v~~~s--sGN~g~a~A~~a~~~G~~  272 (410)
                      ..|||++++.|++.. +.+||+|+|++||+  ||||+|++.+++..+++.|.+++|+ +|  +||||.|+|++|+.+|++
T Consensus        14 ~~TPl~~~~~l~~~~-g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt-~g~s~gN~g~alA~~a~~~G~~   91 (331)
T PRK03910         14 LPTPLEPLPRLSAAL-GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLIT-AGAIQSNHARQTAAAAAKLGLK   91 (331)
T ss_pred             CCCCceEhhhhhHhh-CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEE-cCcchhHHHHHHHHHHHHhCCc
Confidence            489999999888766 67999999999997  5999999999999998888887765 54  589999999999999999


Q ss_pred             EEEEEcCCCccch-----hhhHHHHHHCCCEEEEEeCCC-HHHH-HHHHHHHHHccCCCceEEe-cCCCCCCCChhHHHh
Q psy11239        273 SIIYIGENDYKRQ-----NINVKKIKLLGGTVYLVQYGN-LKEA-MNEAIKDWSNNILNSHYLI-GTASGPHPYPTIVRD  344 (410)
Q Consensus       273 ~~vv~p~~~~~~~-----~~~~~~~~~~Ga~v~~v~~g~-~~~~-~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  344 (410)
                      |+||||+..++.+     +.|+..++.+||+|+.++..+ ..+. ...+.++.++.  +..|+. .++.  +++   ...
T Consensus        92 ~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~--~~~~~~~~~~~--~~~---~~~  164 (331)
T PRK03910         92 CVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQG--RRPYVIPVGGS--NAL---GAL  164 (331)
T ss_pred             EEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcC--CceEEECCCCC--Cch---hHH
Confidence            9999998655322     267789999999999997543 3333 33343433332  234443 3332  333   345


Q ss_pred             hhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCc
Q psy11239        345 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISK  401 (410)
Q Consensus       345 g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~  401 (410)
                      |+.+++.||++|++..+..||+||+|+|||||++|++.+|++.  +++||||||+++..
T Consensus       165 g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~  223 (331)
T PRK03910        165 GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAA  223 (331)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHH
Confidence            7789999999999732347999999999999999999999864  89999999998754

>TIGR00260 thrC threonine synthase

Probab=100.00  E-value=1.4e-32  Score=269.55  Aligned_cols=179  Identities=13%  Similarity=0.061  Sum_probs=146.0

Q ss_pred             CCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         11 KKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        11 ~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...++|||+++++|...++..+||+|+|++|||||||||.+...+..+.+.+.. .|+++||||||+|+|++|+.+|++|
T Consensus        19 l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~vv~aSsGN~g~a~A~~a~~~g~~~   97 (328)
T TIGR00260        19 LGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGND-TVLCASTGNTGAAAAAYAGKAGVKV   97 (328)
T ss_pred             hccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHhccCCCcE
Confidence            355899999999998887434999999999999999999877666666666655 4555799999999999999999999


Q ss_pred             EEEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHH
Q psy11239         91 IIYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~E  169 (410)
                      +||||+. ++   +.|+.+++.|||+|+.++ ++++++.+.+.+.+++.   ..|..+. .+..|+   .+.||.|+++|
T Consensus        98 ~v~~p~~~~s---~~k~~~~~~~GA~Vi~~~-~~~~~~~~~~~~~~~~~---~~~~~~~-~n~~~~---~~~g~~t~~~E  166 (328)
T TIGR00260        98 VILYPAGKIS---LGKLAQALGYNAEVVAID-GNFDDAQRLVKQLFGDK---EALGLNS-VNSIPY---RLEGQKTYAFE  166 (328)
T ss_pred             EEEECCCCCC---HHHHHHHHhcCcEEEEec-CCHHHHHHHHHHHHhhc---Ceeeccc-CCCCCe---EeeeehhHHHH
Confidence            9999997 66   589999999999999998 78999988888877653   1332221 111133   46899999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      |++|++.  ..||+||+|+|+||+++|+...|.+
T Consensus       167 i~~q~~~--~~~d~iv~~vG~GG~~~G~~~~~~~  198 (328)
T TIGR00260       167 AVEQLGW--EAPDKVVVPVPNSGNFGAILKGFKE  198 (328)
T ss_pred             HHHHhCC--CCCCEEEEECCCcchHHHHHHHHHH
Confidence            9999642  3589999999999999999888865

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=99.98  E-value=1.8e-31  Score=262.10  Aligned_cols=202  Identities=17%  Similarity=0.191  Sum_probs=159.0

Q ss_pred             cccccccccccccccc-CceeEEeecCCCCC---chhhHHHHHHHHHHHHHcCCCceEEe-cCchHHHHHHHHHHHHcCC
Q psy11239        197 RPTPIYYCKNISNILK-GSKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICE-TGAGMHGVSTATSCCLLNL  271 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~-~~~v~~K~e~~~pt---gS~K~R~a~~~~~~a~~~g~~~~v~~-~ssGN~g~a~A~~a~~~G~  271 (410)
                      .+|||++++++++.++ +.+||+|+|++||+   ||||+|++..++..++++|...+++. .|+||||+++|++|+++|+
T Consensus        13 g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl   92 (337)
T TIGR01274        13 GPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGM   92 (337)
T ss_pred             CCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCC
Confidence            3899999999988774 25999999999986   77899999999999999999876652 2679999999999999999


Q ss_pred             cEEEEEcCCCc-c----chhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHH
Q psy11239        272 ESIIYIGENDY-K----RQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR  343 (410)
Q Consensus       272 ~~~vv~p~~~~-~----~~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (410)
                      +|+||||+..+ +    .++.|+.+|+.+||+|+.++...   ..++..++.+.+++.+ +..|++.....+|++.   .
T Consensus        93 ~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~-~~~~~i~~~~~~~~~~---~  168 (337)
T TIGR01274        93 KCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAG-GKPYPIPAGCSDHPLG---G  168 (337)
T ss_pred             cEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcC-CceEEeCCCCCCCccc---h
Confidence            99999997432 1    12478999999999999986321   2356666666666552 2334443332234553   4


Q ss_pred             hhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        344 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       344 ~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      .|+.+++.||++|+.+.+..||+||+|+|||||++|++.+++..  ++|||||||+++...
T Consensus       169 ~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~  229 (337)
T TIGR01274       169 LGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQ  229 (337)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence            67888899999998644557999999999999999999999865  899999999998654

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=99.97  E-value=2.4e-31  Score=258.90  Aligned_cols=183  Identities=21%  Similarity=0.147  Sum_probs=135.9

Q ss_pred             CCCCCCcCccccccccccCCceEEEeeCCCCCC--CchhhhHHHHHHHHHHHhcCCceEEEe--CccHHHHHHHHHHHHc
Q psy11239         11 KKGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLL   86 (410)
Q Consensus        11 ~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~npt--GS~K~R~~~~~~~~~~~~~~~~~v~~~--ssGN~g~a~A~~a~~~   86 (410)
                      +..++|||+++++|++.. +.+||+|+|++||+  ||||||.+......+++.+...+| ++  |+||||+|+|++|+.+
T Consensus         3 ~~~~~TPl~~~~~l~~~~-g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv-~~g~ssGN~g~alA~~a~~~   80 (311)
T TIGR01275         3 LIPWPTPIQYLPRISREI-GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVI-TVGAIQSNHARATALAAKKL   80 (311)
T ss_pred             CCCCCCcceechhhhhhc-CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEE-EcCCchhHHHHHHHHHHHHh
Confidence            466899999999998876 58999999999998  999999876665556655554444 45  4599999999999999


Q ss_pred             CCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhh---cccCCcccccccccCccccccccccc
Q psy11239         87 NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSN---NILNSHYLIGTASGPHPYPTIVRDFQ  163 (410)
Q Consensus        87 G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~g~  163 (410)
                      |++|+||||+..+.  ..|..+++.|||+|+.++.+++++..+.+.+..++   .....++++.+.  .||+   ...|+
T Consensus        81 G~~~~ivvp~~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~---~~~g~  153 (311)
T TIGR01275        81 GLDAVLVLREKEEL--NGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGG--SNSL---GTLGY  153 (311)
T ss_pred             CCceEEEecCCccC--CCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCC--CcHH---HHHHH
Confidence            99999999996432  36788899999999999844555554544444332   211122322322  2332   25677


Q ss_pred             hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      .++++||++|++. +..||+||+|+|||||++|+.+.|..
T Consensus       154 ~~~~~EI~~q~~~-~~~~D~vv~~vGtGgt~~Gi~~~lk~  192 (311)
T TIGR01275       154 VEAVLEIATQLES-EVKFDSIVVAAGSGGTIAGLSLGLSI  192 (311)
T ss_pred             HHHHHHHHHHHhc-CCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence            7899999999752 22589999999999999999776643

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=99.97  E-value=2.2e-30  Score=253.57  Aligned_cols=192  Identities=21%  Similarity=0.234  Sum_probs=149.0

Q ss_pred             ccccccccccccccccCceeEEeecCCCCC--chhhHHHHHHHHHHHHHcCCCceEE-ecCchHHHHHHHHHHHHcCCcE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIIC-ETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt--gS~K~R~a~~~~~~a~~~g~~~~v~-~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      ..||++++++++... +++||+|+|++||+  ||||+|++..++..+.+.|.+.+++ ++|+||||+|+|++|+++|++|
T Consensus        20 ~~TPl~~~~~l~~~~-g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~   98 (329)
T PRK14045         20 WETPIQYLPNISREL-GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDA   98 (329)
T ss_pred             CCCCcccchhhHHHh-CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeE
Confidence            389999998888766 58999999999986  8999999999998888888887764 7999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHHccCCCceEE-ecCCCCCCCChhHHHhhhhh
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN----LKEAMNEAIKDWSNNILNSHYL-IGTASGPHPYPTIVRDFQSI  348 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~----~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~t  348 (410)
                      ++|||...+.  +.+...++.+||+++.++.+.    .+.+.+.+.++.++.  +..|+ ..++.  +|+.  ...++.+
T Consensus        99 ~ivvp~~~~~--~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~p~~~~--n~~~--~~g~~~~  170 (329)
T PRK14045         99 VLVLRGKEEL--KGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEG--RKPYIIPPGGA--SPVG--TLGYVRA  170 (329)
T ss_pred             EEEEeCCCCC--CcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcC--CCEEEECCCCC--chhH--HHHHHHH
Confidence            9999965333  356677899999999886422    334444444444333  23444 34433  3322  3334444


Q ss_pred             HHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCC
Q psy11239        349 IGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGG  398 (410)
Q Consensus       349 ~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g  398 (410)
                      ++ ||++|+++.+..+|+||+|+|||||++|++.+++.  +++|||||+|.+
T Consensus       171 ~~-EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~  221 (329)
T PRK14045        171 VG-EIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS  221 (329)
T ss_pred             HH-HHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            44 99999974445799999999999999999999985  489999999976

>KOG1481|consensus

Probab=99.97  E-value=6.4e-31  Score=238.97  Aligned_cols=207  Identities=22%  Similarity=0.221  Sum_probs=158.8

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      .+++|||+++++|++.- +++|+.|+|++||.||-|||.++..+..+++.++   +++|++.|+||+|+++|..|+.+|+
T Consensus        46 ~IGnTpliri~sLs~aT-GcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~Gy  124 (391)
T KOG1481|consen   46 AIGNTPLIRINSLSNAT-GCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALGY  124 (391)
T ss_pred             hhCCCceEEeecccccc-ccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHhhhhcCc
Confidence            56899999999999986 8999999999999999999988777667776664   5699999999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC---HHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccc
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQ  163 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~  163 (410)
                      +|+|+||.+.+   .+|.+.++.+||+|..|++.+   ...-+..|++.+.+.+....-+-+  .+.+||+|+.  ..||
T Consensus       125 k~~I~mPddqs---~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g--~fAdQFeN~AN~~aHy  199 (391)
T KOG1481|consen  125 KCHIYMPDDQS---QEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRG--WFADQFENVANWLAHY  199 (391)
T ss_pred             ceEEECCChHH---HHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCccc--chhhhhcCHHHHHHHh
Confidence            99999999987   599999999999999997643   344455555555444322211111  2356777763  6899


Q ss_pred             hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccC-ceeEEeecCCCCCch---hhH-HHHHHH
Q psy11239        164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKG-SKIFLKREDLNFTGA---HKM-NNSIAQ  237 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~-~~v~~K~e~~~ptgS---~K~-R~a~~~  237 (410)
                      .|+|+|||.|..  + ..|.|++.+|||||++|+      .+.|.++.++ +.+++    ..|.||   +|. ++.++.
T Consensus       200 etTGPEIw~Qtk--G-niDaFia~~GTGGTiaGV------skyLkek~~~~v~~~l----aDPpGSGlYnkV~~GVmy~  265 (391)
T KOG1481|consen  200 ETTGPEIWHQTK--G-NIDAFIAGTGTGGTIAGV------SKYLKEKSDGRVAVFL----ADPPGSGLYNKVNYGVMYD  265 (391)
T ss_pred             cCcCcHHHHhhc--C-CcceEEeccCCCcchHHH------HHHHhhcCCCceEEEE----eCCCCCchhhhhhhhhhhh
Confidence            999999999954  3 579999999999999999      4555544422 45553    345666   444 355333

>TIGR03844 cysteate_syn cysteate synthase

Probab=99.97  E-value=1e-30  Score=260.51  Aligned_cols=189  Identities=13%  Similarity=0.069  Sum_probs=152.2

Q ss_pred             cccccccccccccccCceeEE-------eecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcC
Q psy11239        198 PTPIYYCKNISNILKGSKIFL-------KREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLN  270 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~-------K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G  270 (410)
                      .||+++++.|++.++..+||+       |+|++|||||||||++..++..+.+.+.+.++ ++|+||||+|+|++|+++|
T Consensus        62 ~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~~~Vv-~aSsGN~g~alA~~aa~~G  140 (398)
T TIGR03844        62 GPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGGKTLV-VASAGNTGRAFAEVSAITG  140 (398)
T ss_pred             CCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCCCEEE-EECCCHHHHHHHHHHHHcC
Confidence            479999999988874339999       55558999999999999999999988866655 5999999999999999999


Q ss_pred             CcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHH
Q psy11239        271 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG  350 (410)
Q Consensus       271 ~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g  350 (410)
                      ++|+||||+..++   .+...++.+||+|+.++ ++++++.+.+.+..++.  + +|...+..  +||   ..+|++|++
T Consensus       141 i~~~I~vP~~~~~---~~~~~~~~~ga~vv~v~-g~~d~a~~~a~~~a~~~--g-~~~~~~~~--~p~---~ieG~~Ti~  208 (398)
T TIGR03844       141 QPVILVVPKSSAD---RLWTTEPASSVLLVTVD-GDYTDAIALADRIATLP--G-FVPEGGAR--NVA---RRDGMGTVM  208 (398)
T ss_pred             CcEEEEECCChHH---HHHHHhhCCcEEEEECC-CCHHHHHHHHHHHHHhC--C-ccccCCCC--CHH---HHhhHHHHH
Confidence            9999999986433   22223478999999884 56999999998887764  3 33221111  333   689999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC---------CCeEEEEccCCCCcC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS---------NFKLVAIESGGISKK  402 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~---------~~~vigVe~~g~~~~  402 (410)
                      +||++|++   ..||+||+|+|+|.++.|++.++++.         -+|+++|||++++..
T Consensus       209 ~Ei~eql~---~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~  266 (398)
T TIGR03844       209 LDAAVTIG---SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPM  266 (398)
T ss_pred             HHHHHHcC---CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHH
Confidence            99999994   35999999999998899999888762         389999999998753

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.

>TIGR03844 cysteate_syn cysteate synthase

Probab=99.97  E-value=3.8e-31  Score=263.58  Aligned_cols=177  Identities=12%  Similarity=0.062  Sum_probs=141.6

Q ss_pred             CCCCCcCccccccccccCCceEEE-------eeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHH
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFL-------KREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCC   84 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~-------K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~   84 (410)
                      ....|||+++++|++.+|..+||+       |+|++|||||||||++...+..+.+.+.+.+++ +|+||||+|+|++|+
T Consensus        59 ~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~~~Vv~-aSsGN~g~alA~~aa  137 (398)
T TIGR03844        59 TRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGGKTLVV-ASAGNTGRAFAEVSA  137 (398)
T ss_pred             CCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCCCEEEE-ECCCHHHHHHHHHHH
Confidence            344699999999999885559999       555599999999999988877777777555555 699999999999999


Q ss_pred             HcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccc
Q psy11239         85 LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQ  163 (410)
Q Consensus        85 ~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~  163 (410)
                      ++|++|+||||+.++.   .+...++.+||+|+.++ ++|+++.+.+.+++++.  + +|      ..+++++| .++|+
T Consensus       138 ~~Gi~~~I~vP~~~~~---~~~~~~~~~ga~vv~v~-g~~d~a~~~a~~~a~~~--g-~~------~~~~~~~p~~ieG~  204 (398)
T TIGR03844       138 ITGQPVILVVPKSSAD---RLWTTEPASSVLLVTVD-GDYTDAIALADRIATLP--G-FV------PEGGARNVARRDGM  204 (398)
T ss_pred             HcCCcEEEEECCChHH---HHHHHhhCCcEEEEECC-CCHHHHHHHHHHHHHhC--C-cc------ccCCCCCHHHHhhH
Confidence            9999999999998652   22333589999999998 78999999998887653  1 22      12333344 57999


Q ss_pred             hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239        164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK  205 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~  205 (410)
                      +|+++||++|+.   ..||+||+|+|+|..+.|++..+.++.
T Consensus       205 ~Ti~~Ei~eql~---~~PD~VvvPvG~G~~~~~~~~~~~~l~  243 (398)
T TIGR03844       205 GTVMLDAAVTIG---SLPDHYFQAVGSGTGGIAAWEAAMRLI  243 (398)
T ss_pred             HHHHHHHHHHcC---CCCCEEEEecCCCHHHHHHHHHHHHHH
Confidence            999999999964   359999999999988888888776643

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.97  E-value=1.3e-30  Score=252.84  Aligned_cols=190  Identities=26%  Similarity=0.328  Sum_probs=148.1

Q ss_pred             ccccccccc-cccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        197 RPTPIYYCK-NISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       197 ~~tpl~~~~-~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      .+|||++++ .+....++.+||+|+|++|||||||+|++.+++..+++++.++++ ++|+||||.|+|++|+.+|++|++
T Consensus         6 ~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~~vv-~assGN~g~a~A~~a~~~g~~~~i   84 (306)
T PF00291_consen    6 GPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGRTVV-GASSGNHGRALAYAAARLGLKCTI   84 (306)
T ss_dssp             SSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTSEEE-EESSSHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhccccccceee-eeccCCceehhhhhhhhcccccee
Confidence            379999975 333334489999999999999999999999999999888877774 599999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcc----CCCceEEecCCCCCCCC-hhHHHhhhhhHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNN----ILNSHYLIGTASGPHPY-PTIVRDFQSIIG  350 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~g~~t~g  350 (410)
                      |+|++. +  +.++++++.+||+|+.++.. +++..+.+.+..++.    ...... +      ++| +.....|+.+++
T Consensus        85 ~~p~~~-~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~g~~~~~  153 (306)
T PF00291_consen   85 VVPEDV-S--PEKLKQMRALGAEVILVPGD-VEGAFDDAQELAKERAELLSPFNGE-L------NQYNNPNVIAGYATIG  153 (306)
T ss_dssp             EEETTS-H--HHHHHHHHHTTCEEEEESST-HHHHHHHHHHHHHHHHHHHHHSTTE-E------STTTSHHHHHHHHHHH
T ss_pred             eecccc-c--cccccceeeecceEEEcccc-ccccccccccccccccccccccccc-c------Ccccchhhhhhhhhcc
Confidence            999863 3  38899999999999988643 333333333332211    000011 2      333 333789999999


Q ss_pred             HHHHHhhhhcCCCCCE--EEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCcC
Q psy11239        351 YEIHQQLNFNFYNKKY--ILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISKK  402 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~--iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~~  402 (410)
                      .||.+|+.    .||+  ||+|+||||+++|++.+++.   +.+|||+|||.+++.+
T Consensus       154 ~Ei~~q~~----~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~~~~~vigv~~~~~~~~  206 (306)
T PF00291_consen  154 LEIYEQLG----KPDPDYVVVPVGTGGTAAGIAAGLKELILPPVRVIGVEPEGSDPL  206 (306)
T ss_dssp             HHHHHHHT----TESESEEEEEESSSHHHHHHHHHHHHHCHTTSEEEEEEETTGHHH
T ss_pred             hhcccccc----cccceEEEecCCchhHHHHHHhhhhhhhcccccceeeeccCCccc
Confidence            99999995    5555  99999999999999999988   4999999999988654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=99.97  E-value=3.4e-30  Score=252.64  Aligned_cols=191  Identities=20%  Similarity=0.191  Sum_probs=139.3

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCC--CchhhhHHHHHHHHHHHhcCCceEEEeC--ccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICETG--AGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~npt--GS~K~R~~~~~~~~~~~~~~~~~v~~~s--sGN~g~a~A~~a~~~G   87 (410)
                      ..++|||+++++|++.+ +.+||+|+|++||+  ||||||.+......+.+.+...+|+ +|  +||||+|+|++|+.+|
T Consensus        12 ~~~~TPl~~~~~l~~~~-g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt-~g~s~gN~g~alA~~a~~~G   89 (331)
T PRK03910         12 AGLPTPLEPLPRLSAAL-GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLIT-AGAIQSNHARQTAAAAAKLG   89 (331)
T ss_pred             cCCCCCceEhhhhhHhh-CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEE-cCcchhHHHHHHHHHHHHhC
Confidence            56899999999998876 67999999999997  6999998766555566666555554 43  4899999999999999


Q ss_pred             CcEEEEeccCCcccc-----chhHHHHHhcCCEEEEEeCCC-HHHHH-HHHHHHHhhcccCCcccccccccCcccccc-c
Q psy11239         88 LESIIYIGENDYKRQ-----NINVKKIKLLGGTVYLVQYGN-LKEAM-NEAIKDWSNNILNSHYLIGTASGPHPYPTI-V  159 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~-----~~k~~~~~~~GA~v~~v~~g~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~  159 (410)
                      ++|+||||+..+..+     +.|+..|+.|||+|+.++..+ ..++. ..+.++.++. ...+++      ++++.++ .
T Consensus        90 ~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~------~~~~~~~~~  162 (331)
T PRK03910         90 LKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQG-RRPYVI------PVGGSNALG  162 (331)
T ss_pred             CcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcC-CceEEE------CCCCCCchh
Confidence            999999999876422     268899999999999998432 22222 2333333322 111221      2223333 2


Q ss_pred             cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeE
Q psy11239        160 RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIF  217 (410)
Q Consensus       160 ~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~  217 (410)
                      ..|+.+++.||++|+...+..||+||+|+|||||++|+...|.+..      +.++|+
T Consensus       163 ~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~------~~~~vi  214 (331)
T PRK03910        163 ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALG------PDIPVI  214 (331)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhC------CCCeEE
Confidence            5788899999999976433369999999999999999977775422      356666

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=99.97  E-value=7.9e-30  Score=250.61  Aligned_cols=196  Identities=19%  Similarity=0.155  Sum_probs=142.1

Q ss_pred             CCCCCcCccccccccccCC-ceEEEeeCCCCCC---CchhhhHHHHHHHHHHHhcCCceEEEe--CccHHHHHHHHHHHH
Q psy11239         12 KGRPTPIYYCKNISNILKG-SKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCL   85 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~-~~i~~K~E~~npt---GS~K~R~~~~~~~~~~~~~~~~~v~~~--ssGN~g~a~A~~a~~   85 (410)
                      ...+|||++++++++.+|. .+||+|+|++||+   ||||||.+...+..+.+.+.. +|+++  |+||||+|+|++|+.
T Consensus        12 ~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~-~vvs~G~s~GN~g~alA~aa~~   90 (337)
T PRK12390         12 TFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGAD-TLVSIGGVQSNHTRQVAAVAAH   90 (337)
T ss_pred             CCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCC-EEEEeCCCccHHHHHHHHHHHH
Confidence            5689999999999887743 7999999999998   788999766555555555553 44445  669999999999999


Q ss_pred             cCCcEEEEeccCCcc-----ccchhHHHHHhcCCEEEEEeCCCH----HHHHHHHHHHHhhcccCCcccccccccCcccc
Q psy11239         86 LNLESIIYIGENDYK-----RQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGTASGPHPYP  156 (410)
Q Consensus        86 ~G~~~~iv~p~~~~~-----~~~~k~~~~~~~GA~v~~v~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  156 (410)
                      +|++|+||||...+.     .+..|+.+|+.|||+|+.++. ++    .++.+.+.+.+++.. +..|.+-.....||+ 
T Consensus        91 ~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-  167 (337)
T PRK12390         91 LGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPD-GFDIGIRKSWEDALEDVRAAG-GKPYAIPAGASDHPL-  167 (337)
T ss_pred             cCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCC-CcchhHHHHHHHHHHHHHhCC-CceEEeCCcCCCCCc-
Confidence            999999998765442     134588899999999999983 33    466667766666532 222311110112232 


Q ss_pred             ccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        157 TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       157 ~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                        ...|+.++++||++|.+..+..||+||+|+|||||++|+...|...      .+.++|+.-
T Consensus       168 --~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~------~~~~rvigV  222 (337)
T PRK12390        168 --GGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAAD------GRARRVIGI  222 (337)
T ss_pred             --ccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhc------CCCceEEEE
Confidence              3577888899999986422335999999999999999997776542      235677743

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=99.97  E-value=5.8e-30  Score=248.59  Aligned_cols=192  Identities=19%  Similarity=0.135  Sum_probs=137.9

Q ss_pred             CcCccccccccccC-CceEEEeeCCCCCC---CchhhhHHHHHHHHHHHhcCCceEEEe--CccHHHHHHHHHHHHcCCc
Q psy11239         16 TPIYYCKNISNILK-GSKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLLNLE   89 (410)
Q Consensus        16 TPl~~~~~l~~~~~-~~~i~~K~E~~npt---GS~K~R~~~~~~~~~~~~~~~~~v~~~--ssGN~g~a~A~~a~~~G~~   89 (410)
                      |||+++++|++.+| +.+||+|+|++||+   ||||||.+......+.+.+... |+++  |+||||+|+|++|+.+|++
T Consensus         1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~-vv~~ggs~GN~g~alA~~a~~~G~~   79 (307)
T cd06449           1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADT-LVTVGGIQSNHTRQVAAVAAKLGLK   79 (307)
T ss_pred             CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCE-EEECCCchhHHHHHHHHHHHHcCCe
Confidence            89999999988775 47999999999999   5669998665555555555544 4445  4799999999999999999


Q ss_pred             EEEEeccCCcc-----ccchhHHHHHhcCCEEEEEeCCC---HHHHHHHHHHHHhhcccCCcccccccccCccccccccc
Q psy11239         90 SIIYIGENDYK-----RQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRD  161 (410)
Q Consensus        90 ~~iv~p~~~~~-----~~~~k~~~~~~~GA~v~~v~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  161 (410)
                      |+||||+..+.     ..+.|+.+|+.|||+|+.++...   ..++.+.+.+.+.+.....+++..+. ..||+   .+.
T Consensus        80 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~  155 (307)
T cd06449          80 CVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGG-SEHPL---GGL  155 (307)
T ss_pred             EEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCC-CCCcc---cHH
Confidence            99999997762     11368999999999999997322   12333444444443311122222221 11333   467


Q ss_pred             cchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        162 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |+.+++.||++|++..+..||+||+|+|||||++|+...|...      .+..+|+.
T Consensus       156 G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~------~~~~~ii~  206 (307)
T cd06449         156 GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAAL------GRQRRVIG  206 (307)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhc------CCCCeEEE
Confidence            8999999999998644446999999999999999997666432      23456664

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=99.96  E-value=1.3e-29  Score=248.91  Aligned_cols=195  Identities=15%  Similarity=0.114  Sum_probs=143.7

Q ss_pred             CCCCCcCccccccccccC-CceEEEeeCCCCCC---CchhhhHHHHHHHHHHHhcCCceEEEe--CccHHHHHHHHHHHH
Q psy11239         12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCL   85 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~npt---GS~K~R~~~~~~~~~~~~~~~~~v~~~--ssGN~g~a~A~~a~~   85 (410)
                      ..++|||+++++|++.+| +.+||+|+|++||+   ||||||.+...+..+++.+... |+++  |+||||+|+|++|+.
T Consensus        11 ~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~-vvs~ggs~gN~g~alA~~a~~   89 (337)
T TIGR01274        11 TFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTT-LVSIGGIQSNQTRQVAAVAAH   89 (337)
T ss_pred             CCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCE-EEECCCCcchHHHHHHHHHHH
Confidence            568999999999998875 35999999999987   7779997766666666666544 3433  459999999999999


Q ss_pred             cCCcEEEEeccCCc--c---ccchhHHHHHhcCCEEEEEeCCCH----HHHHHHHHHHHhhcccCCcccccccccCcccc
Q psy11239         86 LNLESIIYIGENDY--K---RQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGTASGPHPYP  156 (410)
Q Consensus        86 ~G~~~~iv~p~~~~--~---~~~~k~~~~~~~GA~v~~v~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  156 (410)
                      +|++|+||||+..+  .   ..+.|+.+|+.|||+|+.++ +++    .++..++.+.+++.....+++..+ ...||+ 
T Consensus        90 ~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~-~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~-~~~~~~-  166 (337)
T TIGR01274        90 LGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDP-DGFDIGHRNSWERALEEVRGAGGKPYPIPAG-CSDHPL-  166 (337)
T ss_pred             cCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeC-CcccccchHHHHHHHHHHHhcCCceEEeCCC-CCCCcc-
Confidence            99999999998542  0   11479999999999999997 433    356666666666542222332221 122444 


Q ss_pred             ccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        157 TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       157 ~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                        ...|+.++++||++|+...+..||+||+|+|||||++|+..++....      +.++|+.
T Consensus       167 --~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~------~~~~vig  220 (337)
T TIGR01274       167 --GGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADG------RKDRVIG  220 (337)
T ss_pred             --chhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhC------CCCeEEE
Confidence              34678888999999975333469999999999999999977775421      2467774

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>KOG1481|consensus

Probab=99.96  E-value=7.3e-30  Score=232.09  Aligned_cols=193  Identities=21%  Similarity=0.200  Sum_probs=159.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++..|++.. +++|+.|.|.+||.||.|||-|++++..|++.|.   ...|+|.|+||+|.++|..|+.+|++|+
T Consensus        49 nTpliri~sLs~aT-GcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~Gyk~~  127 (391)
T KOG1481|consen   49 NTPLIRINSLSNAT-GCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALGYKCH  127 (391)
T ss_pred             CCceEEeecccccc-ccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHhhhhcCcceE
Confidence            79999999999887 8999999999999999999999999999998886   5788999999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCc----eEEecCCCCCCCChh--HHHhh
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNS----HYLIGTASGPHPYPT--IVRDF  345 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~g  345 (410)
                      |+||++. +  +.|.+.++.+||+|..|+.-.   ...-++.|++.+.+.....    -|+-      ++|+.  +..+|
T Consensus       128 I~mPddq-s--~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fA------dQFeN~AN~~aH  198 (391)
T KOG1481|consen  128 IYMPDDQ-S--QEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFA------DQFENVANWLAH  198 (391)
T ss_pred             EECCChH-H--HHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchh------hhhcCHHHHHHH
Confidence            9999754 3  478999999999999987543   3333444444333221111    1221      66633  37899


Q ss_pred             hhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC---CCeEEEEccCCCCcCC
Q psy11239        346 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS---NFKLVAIESGGISKKR  403 (410)
Q Consensus       346 ~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigVe~~g~~~~~  403 (410)
                      |.|+|+|||.|..   +.+|++++.+|||||++|+.+++++.   .++++-.+|-||.+-+
T Consensus       199 yetTGPEIw~Qtk---GniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYn  256 (391)
T KOG1481|consen  199 YETTGPEIWHQTK---GNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYN  256 (391)
T ss_pred             hcCcCcHHHHhhc---CCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhh
Confidence            9999999999996   68999999999999999999999875   5889999999997643

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.96  E-value=9.8e-30  Score=246.76  Aligned_cols=189  Identities=26%  Similarity=0.301  Sum_probs=139.2

Q ss_pred             CCCCCcCcccc-ccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCK-NISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~-~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ..++|||++++ ++....++.+||+|+|++|||||||||.+...+..+++.+...+ +++|+||||+|+|++|+.+|++|
T Consensus         4 ~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~~v-v~assGN~g~a~A~~a~~~g~~~   82 (306)
T PF00291_consen    4 GIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGRTV-VGASSGNHGRALAYAAARLGLKC   82 (306)
T ss_dssp             GSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTSEE-EEESSSHHHHHHHHHHHHHTCEE
T ss_pred             CCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccccee-eeeccCCceehhhhhhhhccccc
Confidence            45799999976 33434458999999999999999999988766666666655455 55799999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhc---ccCCcccccccccCcccccc-ccccchhH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNN---ILNSHYLIGTASGPHPYPTI-VRDFQSII  166 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~-~~~g~~ti  166 (410)
                      ++|||+..+   +.|+++|+.+||+|+.++ ++++++.+.+.+.+++.   .....+      ..+||+++ ...|+.++
T Consensus        83 ~i~~p~~~~---~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~  152 (306)
T PF00291_consen   83 TIVVPEDVS---PEKLKQMRALGAEVILVP-GDVEGAFDDAQELAKERAELLSPFNG------ELNQYNNPNVIAGYATI  152 (306)
T ss_dssp             EEEEETTSH---HHHHHHHHHTTCEEEEES-STHHHHHHHHHHHHHHHHHHHHHSTT------EESTTTSHHHHHHHHHH
T ss_pred             eeeeccccc---cccccceeeecceEEEcc-cccccccccccccccccccccccccc------ccCcccchhhhhhhhhc
Confidence            999999977   489999999999999997 45454444444444321   000000      02344334 47999999


Q ss_pred             HHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        167 GYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       167 ~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      +.||++|+.  ..++|+||+|+|+||+++|+...+..+    .. +.++++.
T Consensus       153 ~~Ei~~q~~--~~d~d~vvv~~GtGg~~~Gi~~~~~~~----~~-~~~~vig  197 (306)
T PF00291_consen  153 GLEIYEQLG--KPDPDYVVVPVGTGGTAAGIAAGLKEL----IL-PPVRVIG  197 (306)
T ss_dssp             HHHHHHHHT--TESESEEEEEESSSHHHHHHHHHHHHH----CH-TTSEEEE
T ss_pred             chhcccccc--cccceEEEecCCchhHHHHHHhhhhhh----hc-cccccee
Confidence            999999975  222345999999999999997776543    12 3567764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

Probab=99.96  E-value=2.2e-28  Score=226.87  Aligned_cols=311  Identities=26%  Similarity=0.367  Sum_probs=217.5

Q ss_pred             CCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      .+|||||++.++|.+.|+ ..+||.|.|...||||+|...++.+++.++..+.+.+++++++|.+|.|++.+|+.+|++|
T Consensus        75 ~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~  154 (432)
T COG1350          75 IGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKA  154 (432)
T ss_pred             hCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCcee
Confidence            458999999999999886 6799999999999999999999999999999999999999888999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeC-----------------CCHHHHHHHHHHHHhhcccCCcccccccccCc
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQY-----------------GNLKEAMNEAIKDWSNNILNSHYLIGTASGPH  153 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (410)
                      +|||-..+..++|-++.+|+.|||+|+..++                 |++.-++.+|.|++.++ .+..|++|+..+ |
T Consensus       155 ~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~-~~~kY~lGSVln-h  232 (432)
T COG1350         155 TVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVLN-H  232 (432)
T ss_pred             EEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhC-CCceecchhHHH-H
Confidence            9999998888899999999999999997632                 45666888899888776 357888887654 2


Q ss_pred             cccccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCC---chhh
Q psy11239        154 PYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFT---GAHK  230 (410)
Q Consensus       154 p~~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt---gS~K  230 (410)
                           +.-||..+|.|.-+|++..+..||++|.|||+|++++|+.-||+. ..|.... ..++....-..-|+   |-+|
T Consensus       233 -----vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~-d~l~g~~-~~~fiAvep~a~P~lT~GeY~  305 (432)
T COG1350         233 -----VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIG-DKLRGKK-ETRFIAVEPKACPKLTKGEYR  305 (432)
T ss_pred             -----HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhh-hhhcCCc-eeEEEEeCCccCCccccceee
Confidence                 567899999999999988888999999999999999999999986 4443221 13333322222333   4443


Q ss_pred             HH----HHHHHHHHHHHcCCCceEEe-cCch--HHHHHHHHH-HHHcCCcEEEEEcCCCccchhhhHHHHHHCCC-E-EE
Q psy11239        231 MN----NSIAQSLLAKFLKKKRIICE-TGAG--MHGVSTATS-CCLLNLESIIYIGENDYKRQNINVKKIKLLGG-T-VY  300 (410)
Q Consensus       231 ~R----~a~~~~~~a~~~g~~~~v~~-~ssG--N~g~a~A~~-a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga-~-v~  300 (410)
                      .-    .-+--++..-..|.+.+.-- ..+|  .||.|-... -.+.|+     |-....++ ....+..+.|-- | ++
T Consensus       306 YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Gi-----v~a~ay~Q-~Evfeaa~lFa~~EGiV  379 (432)
T COG1350         306 YDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGI-----VEARAYDQ-EEVFEAAVLFARTEGIV  379 (432)
T ss_pred             ccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCc-----ccceecCh-HHHHHHHHHHHHhcCCc
Confidence            21    11112234456777655321 2333  677654332 223443     21112221 122222222221 1 55


Q ss_pred             EEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh
Q psy11239        301 LVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT  340 (410)
Q Consensus       301 ~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (410)
                      +.|+.+  +..++++|++..++.  ....++-+.+| |..-|
T Consensus       380 PAPEsaHAi~~aid~A~~a~~~g--eekvI~fnlSG-HGllD  418 (432)
T COG1350         380 PAPESAHAIKAAIDEALKAREEG--EEKVILFNLSG-HGLLD  418 (432)
T ss_pred             cCCcchhhHHHHHHHHHhccccC--ceeEEEEeccC-ccccc
Confidence            555444  666666666654443  23334445555 66533

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=99.96  E-value=1.5e-28  Score=240.61  Aligned_cols=192  Identities=19%  Similarity=0.094  Sum_probs=135.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCC--CchhhhHHHHHHHHHHHhcCCceEE-EeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIIC-ETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~npt--GS~K~R~~~~~~~~~~~~~~~~~v~-~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++|++.. +.+||+|+|++||+  ||||||.+...+..+.+.+...+++ ++|+||||+|+|++|+.+|+
T Consensus        18 ~~~~TPl~~~~~l~~~~-g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~   96 (329)
T PRK14045         18 IPWETPIQYLPNISREL-GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGL   96 (329)
T ss_pred             CCCCCCcccchhhHHHh-CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCC
Confidence            45799999999998876 58999999999997  8999998765555555566655553 57889999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-C---HHHHHHHHHHHHhhcccCCcccccccccCccccccccccch
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-N---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQS  164 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~  164 (410)
                      +|++|||...+.  ..|..+++.|||+++.++.. +   ...+.+.+.++.++. ...+|++.+.  .+|+   ...++.
T Consensus        97 ~~~ivvp~~~~~--~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~p~~~--~n~~---~~~g~~  168 (329)
T PRK14045         97 DAVLVLRGKEEL--KGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEG-RKPYIIPPGG--ASPV---GTLGYV  168 (329)
T ss_pred             eEEEEEeCCCCC--CcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcC-CCEEEECCCC--Cchh---HHHHHH
Confidence            999999986542  34777889999999988632 2   223444444443332 1122222221  2222   124444


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      +...||++|+...+..+|+||+|+|||||++|+...+..      ..+.++|+.
T Consensus       169 ~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~------~~~~~kVig  216 (329)
T PRK14045        169 RAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAI------LNAEWRVVG  216 (329)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHH------hCCCCeEEE
Confidence            444499999764434689999999999999999665532      223567774

>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]

Probab=99.95  E-value=2.9e-27  Score=233.44  Aligned_cols=178  Identities=22%  Similarity=0.271  Sum_probs=149.5

Q ss_pred             CCCCcCccccccccccC--CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         13 GRPTPIYYCKNISNILK--GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~~~--~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ...||+++.+++...++  +.++|+|.|++|||||||||++...+.++++.+...+++ +||||+|.|+|+++++.|++|
T Consensus        74 eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~~~I~~-ASSGnTgAs~aaya~rag~~v  152 (411)
T COG0498          74 EGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGAKTILC-ASSGNTGASAAAYAARAGLKV  152 (411)
T ss_pred             hccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcCCEEEE-eCCchHHHHHHHHhccCCCeE
Confidence            45799999988888886  346999999999999999999887777777777644555 699999999999999999999


Q ss_pred             EEEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHH
Q psy11239         91 IIYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~E  169 (410)
                      .|++|++ .+   +.|+.+|..+||+++.++ |++|++++.+.+.+.+.  +..+   .....|||   -+.||+|+++|
T Consensus       153 ~Vl~P~g~vs---~~k~~q~~~~ga~~i~v~-G~fDda~~~vk~~~~~~--~~~~---~~nsiNp~---rlegq~t~~fe  220 (411)
T COG0498         153 FVLYPKGKVS---PGKLAQMLTLGAHVIAVD-GNFDDAQELVKEAANRE--GLLS---AVNSINPY---RLEGQKTYAFE  220 (411)
T ss_pred             EEEecCCCCC---HHHHHHHHhcCCEEEEEc-CcHHHHHHHHHHHHhhC--Ccee---eccccCHH---HhhhhhhhHhH
Confidence            9999997 65   689999999999999999 99999999999988743  1233   22234666   46999999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK  205 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~  205 (410)
                      |++|+..  ..||+|++|+|+||++.+.+.++.+..
T Consensus       221 ~~~ql~~--~~p~~v~vPvGn~gni~a~~~g~~~~~  254 (411)
T COG0498         221 IAEQLGW--KAPDHVVVPVGNGGNLLAIYKGFKEGL  254 (411)
T ss_pred             HHHHhCC--CCCCeEEEeCCchHHHHHHHHHHHhcc
Confidence            9999653  579999999999999999988776543

>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]

Probab=99.94  E-value=5.3e-26  Score=224.52  Aligned_cols=192  Identities=22%  Similarity=0.296  Sum_probs=161.7

Q ss_pred             cccccccccccccccc--CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        197 RPTPIYYCKNISNILK--GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~--~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      ..||+++.+.+...++  +.++|+|.|..|||||||||++...+..+.+.+. ..|+++||||+|.++|+++.+.|++|.
T Consensus        75 g~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~rag~~v~  153 (411)
T COG0498          75 GGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAARAGLKVF  153 (411)
T ss_pred             ccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhccCCCeEE
Confidence            4788888877766663  2459999999999999999999888888888886 455569999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIH  354 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~  354 (410)
                      |++|.+..+  ..++.+|..+||+++.++ |++||+.+.+.+.+.+.  +.++..+ ..  ||+   ...||.|+++||+
T Consensus       154 Vl~P~g~vs--~~k~~q~~~~ga~~i~v~-G~fDda~~~vk~~~~~~--~~~~~~n-si--Np~---rlegq~t~~fe~~  222 (411)
T COG0498         154 VLYPKGKVS--PGKLAQMLTLGAHVIAVD-GNFDDAQELVKEAANRE--GLLSAVN-SI--NPY---RLEGQKTYAFEIA  222 (411)
T ss_pred             EEecCCCCC--HHHHHHHHhcCCEEEEEc-CcHHHHHHHHHHHHhhC--Cceeecc-cc--CHH---HhhhhhhhHhHHH
Confidence            999987455  478899999999999994 88999999999988854  3344432 22  555   5789999999999


Q ss_pred             HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239        355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK  402 (410)
Q Consensus       355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~  402 (410)
                      +|+.  +..||+|++|+|+||++.|++.+++..        .+++.+|++++....
T Consensus       223 ~ql~--~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~  276 (411)
T COG0498         223 EQLG--WKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPG  276 (411)
T ss_pred             HHhC--CCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccch
Confidence            9996  468999999999999999999999863        779999999987653

>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

Probab=99.93  E-value=8.9e-26  Score=209.62  Aligned_cols=202  Identities=33%  Similarity=0.517  Sum_probs=175.3

Q ss_pred             eecccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        195 LGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|.+|||++..+|.+.++ .++||.|.|+..|+||||...|+.+...++..|.+++++|.++|.+|.|++.+|+.+|++|
T Consensus        75 ~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~  154 (432)
T COG1350          75 IGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKA  154 (432)
T ss_pred             hCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCcee
Confidence            478999999999987764 4799999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeC-----------------CCHHHHHHHHHHHHHccCCCceEEecCCCCCC
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQY-----------------GNLKEAMNEAIKDWSNNILNSHYLIGTASGPH  336 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~-----------------g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  336 (410)
                      +|||-..+..+++-+..+|+.+||+|+..|+                 |++-=++.+|.+.+.+++ +.-|.+++..| |
T Consensus       155 ~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~-~~kY~lGSVln-h  232 (432)
T COG1350         155 TVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNE-NTKYSLGSVLN-H  232 (432)
T ss_pred             EEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCC-CceecchhHHH-H
Confidence            9999766666667788899999999998653                 234457788888888773 57888887765 3


Q ss_pred             CChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC------CCeEEEEccCCCCcCC
Q psy11239        337 PYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS------NFKLVAIESGGISKKR  403 (410)
Q Consensus       337 ~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~------~~~vigVe~~g~~~~~  403 (410)
                           +..||..+|.|...|+...+..||++|.|||+|++++|+.--|...      ..++|+|||..++-++
T Consensus       233 -----vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT  300 (432)
T COG1350         233 -----VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLT  300 (432)
T ss_pred             -----HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccc
Confidence                 6889999999999999877889999999999999999997666422      4899999999998764

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=99.91  E-value=4.6e-23  Score=191.18  Aligned_cols=199  Identities=20%  Similarity=0.232  Sum_probs=162.2

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCC--chhhHHHHHHHHHHHHHcCCCceEEecCch--HHHHHHHHHHHHcC
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICETGAG--MHGVSTATSCCLLN  270 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt--gS~K~R~a~~~~~~a~~~g~~~~v~~~ssG--N~g~a~A~~a~~~G  270 (410)
                      ...+||+..++++++++ +.++|+||||+.+.  |.||+|++.+.+..|.+.|.+++|+ +++-  ||.+++|++|+++|
T Consensus        12 ~~~pTPiq~L~rls~~l-g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dTlvT-~GgiQSNh~r~tAavA~~lG   89 (323)
T COG2515          12 IFGPTPIQKLPRLSAHL-GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVT-YGGIQSNHVRQTAAVAAKLG   89 (323)
T ss_pred             CCCCChhhhHHHHHHhc-CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcEEEE-ecccchhHHHHHHHHHHhcC
Confidence            45689999999999998 59999999999653  8899999999888999999999887 5554  99999999999999


Q ss_pred             CcEEEEEcCCC-ccchhhhHHHHHHCCCEEEEEeCCC-H--HHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhh
Q psy11239        271 LESIIYIGEND-YKRQNINVKKIKLLGGTVYLVQYGN-L--KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQ  346 (410)
Q Consensus       271 ~~~~vv~p~~~-~~~~~~~~~~~~~~Ga~v~~v~~g~-~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  346 (410)
                      ++|++++.... .-....|+.+.+.+|++++.++.+. +  ....+...+..++++ +..|++.... .||+.   ..||
T Consensus        90 l~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g-~kpyvIp~GG-~~~~g---~lGy  164 (323)
T COG2515          90 LKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQG-GKPYVIPEGG-SSPLG---ALGY  164 (323)
T ss_pred             CcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcC-CCCcEeccCC-cCccc---cccH
Confidence            99999996432 0023578899999999999998776 3  556667777777774 4566653222 36663   4577


Q ss_pred             hhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCc
Q psy11239        347 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISK  401 (410)
Q Consensus       347 ~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~  401 (410)
                      -..+.||.+|...+ -.+|.||+++|||||.||+..++...  +.+|||+...+...
T Consensus       165 v~~a~Ei~~Q~~~~-~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~  220 (323)
T COG2515         165 VRLALEIAEQAEQL-LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE  220 (323)
T ss_pred             HHHHHHHHHHHhhc-cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH
Confidence            77889999999854 68999999999999999999999865  99999999887654

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=99.83  E-value=1.2e-19  Score=168.42  Aligned_cols=184  Identities=22%  Similarity=0.231  Sum_probs=137.0

Q ss_pred             CCCCCCCcCccccccccccCCceEEEeeCCCCCC--CchhhhHHHHHHHHHHHhcCCc-eEEEeCc--cHHHHHHHHHHH
Q psy11239         10 PKKGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKR-IICETGA--GMHGVSTATSCC   84 (410)
Q Consensus        10 ~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~npt--GS~K~R~~~~~~~~~~~~~~~~-~v~~~ss--GN~g~a~A~~a~   84 (410)
                      ++..+|||+.+++++++++ +.+||+|+||+.+-  |.+|.|.  +++++.++..++. ++++.++  +||.+++|++|+
T Consensus        10 ~l~~~pTPiq~L~rls~~l-g~eiYiKRDD~t~l~~gGNK~RK--Lefll~eal~~g~dTlvT~GgiQSNh~r~tAavA~   86 (323)
T COG2515          10 ELIFGPTPIQKLPRLSAHL-GVEIYIKRDDLTGLAFGGNKIRK--LEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAA   86 (323)
T ss_pred             ccCCCCChhhhHHHHHHhc-CeEEEEEcccccccccCccHHHH--HHHHHhhhhhcCCcEEEEecccchhHHHHHHHHHH
Confidence            4467899999999999998 59999999999664  9999996  6666666666554 5555566  999999999999


Q ss_pred             HcCCcEEEEeccCC-ccccchhHHHHHhcCCEEEEEeCCC-H--HHHHHHHHHHHhhcccCCcccccccccCcccccccc
Q psy11239         85 LLNLESIIYIGEND-YKRQNINVKKIKLLGGTVYLVQYGN-L--KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR  160 (410)
Q Consensus        85 ~~G~~~~iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  160 (410)
                      ++|++|+.++.... .-..+.+..+.+.+|++++.++.+. +  ....+..++..++.+...+.++.+-  .||+   ..
T Consensus        87 ~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG--~~~~---g~  161 (323)
T COG2515          87 KLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGG--SSPL---GA  161 (323)
T ss_pred             hcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCC--cCcc---cc
Confidence            99999999996643 1123578999999999999999764 3  4445555555555433223222211  2333   23


Q ss_pred             ccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239        161 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIY  202 (410)
Q Consensus       161 ~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~  202 (410)
                      -||-..+.||.+|.+.. ..+|+||+++|||||.+|+.-++.
T Consensus       162 lGyv~~a~Ei~~Q~~~~-~~fD~vVva~gs~gT~AGl~~g~~  202 (323)
T COG2515         162 LGYVRLALEIAEQAEQL-LKFDSVVVAPGSGGTHAGLLVGLA  202 (323)
T ss_pred             ccHHHHHHHHHHHHhhc-cCCCEEEEeCCCcchHHHHHHHhh
Confidence            46777778999997643 579999999999999999955553

>PRK09225 threonine synthase; Validated

Probab=99.80  E-value=2.2e-19  Score=181.47  Aligned_cols=167  Identities=14%  Similarity=0.011  Sum_probs=124.3

Q ss_pred             CCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHH---HHHHHHHhcCCceEEEeCccHHHHHH-HHHHHHcCCcE
Q psy11239         15 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIA---QSLLAKFLKKKRIICETGAGMHGVST-ATSCCLLNLES   90 (410)
Q Consensus        15 ~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~---~~~~~~~~~~~~~v~~~ssGN~g~a~-A~~a~~~G~~~   90 (410)
                      .+||.++.        .++|+.--+++||||||||++..   .+..+.+ +...+|+.+||||+|.|+ |.++.+.|++|
T Consensus        88 ~~pl~~l~--------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~  158 (462)
T PRK09225         88 IAPLVQLD--------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRV  158 (462)
T ss_pred             ccceEEeC--------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEE
Confidence            37776652        35888777999999999997643   2223333 434455557999999998 89999999999


Q ss_pred             EEEeccC-CccccchhHHHHHhc-CCEE--EEEeCCCHHHHHHHHHHHHhhccc---CCcccccccccCccccccccccc
Q psy11239         91 IIYIGEN-DYKRQNINVKKIKLL-GGTV--YLVQYGNLKEAMNEAIKDWSNNIL---NSHYLIGTASGPHPYPTIVRDFQ  163 (410)
Q Consensus        91 ~iv~p~~-~~~~~~~k~~~~~~~-GA~v--~~v~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~g~  163 (410)
                      +|+.|++ .+   +.++.+|..+ |++|  +.|+ |+++++...+.+...+..-   ..++..+   ..||+   .+.+|
T Consensus       159 ~V~~P~g~vs---~~q~~Qm~t~~g~nv~vi~V~-G~fDD~q~~vk~~~~d~~~~~~~~l~saN---SiN~~---Ri~gQ  228 (462)
T PRK09225        159 VILYPKGKVS---PVQEKQMTTLQGDNIHVVAVE-GNFDDCQALVKAAFNDEELKEKLKLSSAN---SINIG---RLLAQ  228 (462)
T ss_pred             EEEEcCCCCC---HHHHHHHHhhcCCCeEEEEeC-CCHHHHHHHHHHHhhchhhhhcCceEEEe---ccCHH---HHHHH
Confidence            9999996 66   4789999999 9976  7788 8999999988887654210   0122112   13443   47999


Q ss_pred             hhHHHHHHHhhhhcCCCccEEEEecCCCCceeecccc
Q psy11239        164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTP  200 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tp  200 (410)
                      .+..+|+++|+......||+|++|+|+||++.|.+..
T Consensus       229 ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A  265 (462)
T PRK09225        229 IVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA  265 (462)
T ss_pred             HHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH
Confidence            9999999999753223599999999999999988643

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=99.78  E-value=6.9e-19  Score=177.99  Aligned_cols=167  Identities=13%  Similarity=-0.038  Sum_probs=124.3

Q ss_pred             CcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHH---HHHHHHh-cCCceEEEeCccHHHHH-HHHHHHHcCCcE
Q psy11239         16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQ---SLLAKFL-KKKRIICETGAGMHGVS-TATSCCLLNLES   90 (410)
Q Consensus        16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~---~~~~~~~-~~~~~v~~~ssGN~g~a-~A~~a~~~G~~~   90 (410)
                      +||.++        +.++|++-.+++||||||||++...   +....+. ....+|+.+||||+|.| +++++.+.|++|
T Consensus        88 ~pl~~l--------~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v  159 (460)
T cd01560          88 APLVQL--------GDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDV  159 (460)
T ss_pred             cceEEe--------CCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEE
Confidence            677664        2468999999999999999976433   2223222 23334555699999999 589999999999


Q ss_pred             EEEeccC-CccccchhHHHHHhcCC---EEEEEeCCCHHHHHHHHHHHHhhccc--C-CcccccccccCccccccccccc
Q psy11239         91 IIYIGEN-DYKRQNINVKKIKLLGG---TVYLVQYGNLKEAMNEAIKDWSNNIL--N-SHYLIGTASGPHPYPTIVRDFQ  163 (410)
Q Consensus        91 ~iv~p~~-~~~~~~~k~~~~~~~GA---~v~~v~~g~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~p~~~~~~~g~  163 (410)
                      +|+.|++ .+   +.++.+|..+|+   +++.|+ |+|+++...+.+.+.+..-  + .++..+   ..||+   .+.+|
T Consensus       160 ~Vl~P~g~vs---~~Q~~Qm~t~g~~Nv~vi~V~-G~fDd~q~~vk~~~~d~~~~~~~~l~saN---SiN~~---Ri~~Q  229 (460)
T cd01560         160 VVLYPKGGVS---PIQELQMTTLPADNVHVVAVE-GDFDDCQSLVKALFADEDFNKKLKLSSAN---SINWA---RILAQ  229 (460)
T ss_pred             EEEEcCCCCC---HHHHHHHHhhCCCceEEEEEc-CCHHHHHHHHHHHhcChhhHhcceEEEEe---ccCHH---HHHHH
Confidence            9999996 66   588999999997   899998 8999999988887653200  0 122112   12333   47899


Q ss_pred             hhHHHHHHHhhhhcC-CCccEEEEecCCCCceeecccc
Q psy11239        164 SIIGYEIHQQLNFNF-YNKKYILACVGGGSNALGRPTP  200 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~-~~~d~iv~~vG~Gg~~~G~~tp  200 (410)
                      .+..+|+++|+.... ..|+.|++|+|+||.+.|.+..
T Consensus       230 ~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~A  267 (460)
T cd01560         230 IVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYA  267 (460)
T ss_pred             HHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHH
Confidence            999999999975431 2689999999999999988653

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>PRK09225 threonine synthase; Validated

Probab=99.73  E-value=9.7e-17  Score=162.33  Aligned_cols=176  Identities=14%  Similarity=0.004  Sum_probs=129.7

Q ss_pred             eeEEeecCCCCCchhhHHHHHH---HHHHHHHcCCCceEEecCchHHHHHH-HHHHHHcCCcEEEEEcCCCccchhhhHH
Q psy11239        215 KIFLKREDLNFTGAHKMNNSIA---QSLLAKFLKKKRIICETGAGMHGVST-ATSCCLLNLESIIYIGENDYKRQNINVK  290 (410)
Q Consensus       215 ~v~~K~e~~~ptgS~K~R~a~~---~~~~a~~~g~~~~v~~~ssGN~g~a~-A~~a~~~G~~~~vv~p~~~~~~~~~~~~  290 (410)
                      ++|+..-..+||+|||||++..   .+..+.+ +....|+++||||+|.|+ |.++.+.|++|+|++|++..+  ..+..
T Consensus        97 ~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs--~~q~~  173 (462)
T PRK09225         97 NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVS--PVQEK  173 (462)
T ss_pred             CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC--HHHHH
Confidence            4666666789999999999865   4455555 434455669999999998 788999999999999986444  36677


Q ss_pred             HHHHC-CCEE--EEEeCCCHHHHHHHHHHHHHccC---CCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCC
Q psy11239        291 KIKLL-GGTV--YLVQYGNLKEAMNEAIKDWSNNI---LNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK  364 (410)
Q Consensus       291 ~~~~~-Ga~v--~~v~~g~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~  364 (410)
                      +|..+ |++|  +.| +|++|++...+.+...+..   ...++..++ .  |++   ...+|.+..+|+.+|+......|
T Consensus       174 Qm~t~~g~nv~vi~V-~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-i--N~~---Ri~gQ~~yyfea~~ql~~~~~~p  246 (462)
T PRK09225        174 QMTTLQGDNIHVVAV-EGNFDDCQALVKAAFNDEELKEKLKLSSANS-I--NIG---RLLAQIVYYFYAYLQLGIEAGEK  246 (462)
T ss_pred             HHHhhcCCCeEEEEe-CCCHHHHHHHHHHHhhchhhhhcCceEEEec-c--CHH---HHHHHHHHHHHHHHHhccccCCC
Confidence            88888 8976  666 4779999888777654410   012444333 2  445   57899999999999996211359


Q ss_pred             CEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCc
Q psy11239        365 KYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISK  401 (410)
Q Consensus       365 d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~  401 (410)
                      |+|++|+|+||.+.|.+.+.+-  +-.|+|+++ ..+++
T Consensus       247 ~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~  284 (462)
T PRK09225        247 VNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDV  284 (462)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChH
Confidence            9999999999999999877432  256899987 44433

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=99.70  E-value=4.7e-16  Score=157.42  Aligned_cols=176  Identities=13%  Similarity=-0.041  Sum_probs=129.7

Q ss_pred             ceeEEeecCCCCCchhhHHHHHHH---HHHHHHc-CCCceEEecCchHHHHH-HHHHHHHcCCcEEEEEcCCCccchhhh
Q psy11239        214 SKIFLKREDLNFTGAHKMNNSIAQ---SLLAKFL-KKKRIICETGAGMHGVS-TATSCCLLNLESIIYIGENDYKRQNIN  288 (410)
Q Consensus       214 ~~v~~K~e~~~ptgS~K~R~a~~~---~~~a~~~-g~~~~v~~~ssGN~g~a-~A~~a~~~G~~~~vv~p~~~~~~~~~~  288 (410)
                      .++|++....+||+|||||++..+   +..+.+. .....|+++||||+|.| ++.++.+.|++|+|++|++..+  ..+
T Consensus        95 ~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs--~~Q  172 (460)
T cd01560          95 DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVS--PIQ  172 (460)
T ss_pred             CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC--HHH
Confidence            367888888999999999988644   3344333 23334455999999999 5899999999999999986444  367


Q ss_pred             HHHHHHCCC---EEEEEeCCCHHHHHHHHHHHHHccC---CCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhc-C
Q psy11239        289 VKKIKLLGG---TVYLVQYGNLKEAMNEAIKDWSNNI---LNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFN-F  361 (410)
Q Consensus       289 ~~~~~~~Ga---~v~~v~~g~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~-~  361 (410)
                      ..+|..+|+   +++.|+ |++|++...+.+...+..   .-.++..++ .  |++   ...+|.+..+|++.|+... .
T Consensus       173 ~~Qm~t~g~~Nv~vi~V~-G~fDd~q~~vk~~~~d~~~~~~~~l~saNS-i--N~~---Ri~~Q~~yyf~a~~ql~~~~~  245 (460)
T cd01560         173 ELQMTTLPADNVHVVAVE-GDFDDCQSLVKALFADEDFNKKLKLSSANS-I--NWA---RILAQIVYYFYAYLQLLKRGE  245 (460)
T ss_pred             HHHHHhhCCCceEEEEEc-CCHHHHHHHHHHHhcChhhHhcceEEEEec-c--CHH---HHHHHHHHHHHHHHHhccccC
Confidence            789999997   788884 789999888777654310   012344333 1  444   5789999999999999621 1


Q ss_pred             CCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCC
Q psy11239        362 YNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGG  398 (410)
Q Consensus       362 ~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g  398 (410)
                      ..||+|++|+|+||.+.|.+.+.+-  +-.|+|+++-..
T Consensus       246 ~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n  284 (460)
T cd01560         246 GEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN  284 (460)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence            2699999999999999999887642  255888865543

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]

Probab=99.53  E-value=6e-14  Score=130.00  Aligned_cols=193  Identities=15%  Similarity=0.148  Sum_probs=149.0

Q ss_pred             cccccccccccccc----cc---CceeEEeecCCCC-CchhhHHHHHHHHH-HHHH----cCC-----------------
Q psy11239        197 RPTPIYYCKNISNI----LK---GSKIFLKREDLNF-TGAHKMNNSIAQSL-LAKF----LKK-----------------  246 (410)
Q Consensus       197 ~~tpl~~~~~L~~~----~~---~~~v~~K~e~~~p-tgS~K~R~a~~~~~-~a~~----~g~-----------------  246 (410)
                      +.+|+++++.+.+.    +.   ..++++|++..-| +||.|.|+-.+.++ .|++    .|.                 
T Consensus        77 IES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~  156 (443)
T COG3048          77 IESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKD  156 (443)
T ss_pred             eccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHH
Confidence            46777777654321    11   3589999998887 59999998888776 3442    221                 


Q ss_pred             ---CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCC
Q psy11239        247 ---KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNIL  323 (410)
Q Consensus       247 ---~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~  323 (410)
                         +.-+...|+||.|.++...++.+|++++|.|.. +.  +++|.+++|..|.+|+... .+|..++++-++.++..  
T Consensus       157 FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSA-DA--r~WKKd~LRs~gV~ViEYe-~DY~~AVeeGRk~a~~D--  230 (443)
T COG3048         157 FFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSA-DA--RAWKKDKLRSHGVTVVEYE-QDYGVAVEEGRKEAESD--  230 (443)
T ss_pred             HHHhheEeecccCccceehhhhhhhhcceEEEEecc-hH--HHHHHHHHHhcCceEEEec-chhhHHHHHhhhhhccC--
Confidence               112344899999999999999999999999964 33  3699999999999999984 55999999999988876  


Q ss_pred             CceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCE-----EEEccCchhHHHHHHHHHhcC---CCeEEEEc
Q psy11239        324 NSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY-----ILACVGGGSNALGIFYTFINS---NFKLVAIE  395 (410)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~-----iv~~vGtGg~~~Gi~~~~~~~---~~~vigVe  395 (410)
                      ..+|++....   . .+ ...||...+..|..|+.+.|..+|.     |.+|||.||.-.|++.++|..   +++++-+|
T Consensus       231 P~c~FiDDE~---S-~~-LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaE  305 (443)
T COG3048         231 PNCFFIDDEN---S-RT-LFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAE  305 (443)
T ss_pred             CceEEecccc---h-hh-hhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEec
Confidence            3555553211   0 11 4579999999999999977776664     778999999999999999864   99999999


Q ss_pred             cCCCC
Q psy11239        396 SGGIS  400 (410)
Q Consensus       396 ~~g~~  400 (410)
                      |..|+
T Consensus       306 PthsP  310 (443)
T COG3048         306 PTHSP  310 (443)
T ss_pred             CCCCh
Confidence            99887

>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]

Probab=99.36  E-value=3.2e-12  Score=118.67  Aligned_cols=179  Identities=15%  Similarity=0.149  Sum_probs=132.3

Q ss_pred             CCCCcCcccccccccc----C---CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcC----------------
Q psy11239         13 GRPTPIYYCKNISNIL----K---GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK----------------   63 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~~----~---~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~----------------   63 (410)
                      +..+||+..+..-+.+    .   ..++|+|+++..| +||+|.|+-+.+++.     +.+.+-                
T Consensus        76 iIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~  155 (443)
T COG3048          76 IIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFK  155 (443)
T ss_pred             eeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHH
Confidence            4568888765443222    1   4489999999999 699999965544442     111110                


Q ss_pred             ----CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcc
Q psy11239         64 ----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI  139 (410)
Q Consensus        64 ----~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~  139 (410)
                          +.-|...|+||.|.++-..++.+|++++|.|..++.   ..|.+++|+.|.+|+..+ .+|..++++-++.++.. 
T Consensus       156 ~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr---~WKKd~LRs~gV~ViEYe-~DY~~AVeeGRk~a~~D-  230 (443)
T COG3048         156 DFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADAR---AWKKDKLRSHGVTVVEYE-QDYGVAVEEGRKEAESD-  230 (443)
T ss_pred             HHHHhheEeecccCccceehhhhhhhhcceEEEEecchHH---HHHHHHHHhcCceEEEec-chhhHHHHHhhhhhccC-
Confidence                124555688999999999999999999999988876   599999999999999998 68999999998888765 


Q ss_pred             cCCcccccccccCccccccccccchhHHHHHHHhhhhcCC-----CccEEEEecCCCCceeecccccc
Q psy11239        140 LNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFY-----NKKYILACVGGGSNALGRPTPIY  202 (410)
Q Consensus       140 ~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI~~q~~~~~~-----~~d~iv~~vG~Gg~~~G~~tpl~  202 (410)
                      +. .|++..-...+     .--||...+..+-.|....+.     .|-.|..|||.||--.|+.-+|.
T Consensus       231 P~-c~FiDDE~S~~-----LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLK  292 (443)
T COG3048         231 PN-CFFIDDENSRT-----LFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLK  292 (443)
T ss_pred             Cc-eEEecccchhh-----hhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhH
Confidence            23 33332211112     237899999988888765543     46779999999999999966653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.06  E-value=11  Score=42.40  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=35.9

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYL  301 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~  301 (410)
                      +++++ .++||+|.-+|..+.++|.+++++.....  .+.....+......|.+++.
T Consensus       448 k~VvV-IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~  503 (944)
T PRK12779        448 KEVFV-IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAV  503 (944)
T ss_pred             CEEEE-ECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEe
Confidence            45666 89999999999999999999888775421  11111223334456777543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.66  E-value=24  Score=38.78  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCc-EEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLE-SIIYIGEND--YKRQNINVKKIKLLGGTVYL  301 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~  301 (410)
                      +++|+ .++||.|.-+|..+.++|.+ ++++.+...  .+.....+..++..|.+++.
T Consensus       571 k~VvV-IGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~  627 (752)
T PRK12778        571 KKVAV-VGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT  627 (752)
T ss_pred             CcEEE-ECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence            45666 89999999999999999998 888875421  11111223456678888764

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=89.87  E-value=25  Score=35.96  Aligned_cols=54  Identities=15%  Similarity=0.161  Sum_probs=39.0

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYL  301 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~  301 (410)
                      +++++ .++||.|.-+|..+.++|.+++++.....  .+.....++.++..|.+++.
T Consensus       273 k~VvV-IGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~  328 (449)
T TIGR01316       273 KSVVV-IGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF  328 (449)
T ss_pred             CeEEE-ECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence            45666 89999999999999999999998876421  11112334567778888764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=86.19  E-value=35  Score=38.89  Aligned_cols=54  Identities=13%  Similarity=0.140  Sum_probs=35.3

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCc-EEEEEcCCCc--cchhhhHHHHHHCCCEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLE-SIIYIGENDY--KRQNINVKKIKLLGGTVYL  301 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~~--~~~~~~~~~~~~~Ga~v~~  301 (410)
                      +.+++ .++||.|.-+|..+.++|.+ ++++.+....  +.....++.++..|.+++.
T Consensus       572 k~VvV-IGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~  628 (1006)
T PRK12775        572 KSVVV-IGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFF  628 (1006)
T ss_pred             CEEEE-ECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence            45666 89999999999999999987 4555543211  1111223456667887654

>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins

Probab=82.93  E-value=8.1  Score=34.04  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCC
Q psy11239        258 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHP  337 (410)
Q Consensus       258 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  337 (410)
                      -|..+.++++.+|.+..--++..+.-  ..-+..+...+..|..+  |+-.+..+.+.+..++.. ...-+.+..   ++
T Consensus        10 DG~~l~~~~~~~~~~~~~r~~g~dl~--~~ll~~~~~~~~~v~ll--G~~~~~~~~~~~~l~~~y-p~l~i~g~~---~g   81 (171)
T cd06533          10 DGIGVVWAARLLGGPLPERVTGSDLM--PALLELAAQKGLRVFLL--GAKPEVLEKAAERLRARY-PGLKIVGYH---HG   81 (171)
T ss_pred             CcHHHHHHHHHcCCCCCcccCcHHHH--HHHHHHHHHcCCeEEEE--CCCHHHHHHHHHHHHHHC-CCcEEEEec---CC
Confidence            46788899999999844444332221  23344455567888887  554555555555555542 345454433   34


Q ss_pred             ChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhH
Q psy11239        338 YPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSN  376 (410)
Q Consensus       338 ~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~  376 (410)
                      |-....      -.+|++++.  ...||.|+++.|+---
T Consensus        82 ~~~~~~------~~~i~~~I~--~~~pdiv~vglG~PkQ  112 (171)
T cd06533          82 YFGPEE------EEEIIERIN--ASGADILFVGLGAPKQ  112 (171)
T ss_pred             CCChhh------HHHHHHHHH--HcCCCEEEEECCCCHH
Confidence            321111      124677776  3479999999998665

E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.

>PRK12831 putative oxidoreductase; Provisional

Probab=82.38  E-value=64  Score=33.24  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=37.8

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYL  301 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~  301 (410)
                      +++++ .++||.|.-+|..+.++|.+++++.....  .+.....++.++..|.+++.
T Consensus       282 k~VvV-IGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~  337 (464)
T PRK12831        282 KKVAV-VGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL  337 (464)
T ss_pred             CeEEE-ECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence            46666 89999999999999999999888875431  11111233455667877664

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=81.75  E-value=84  Score=35.77  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=26.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239         65 RIICETGAGMHGVSTATSCCLLNLESIIYIGE   96 (410)
Q Consensus        65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~   96 (410)
                      .+++. ++|..|.+.|+..++.|++++||=..
T Consensus       541 kVaII-GgGPAGLsAA~~Lar~G~~VtV~Ek~  571 (1019)
T PRK09853        541 KVAVI-GAGPAGLAAAYFLARAGHPVTVFERE  571 (1019)
T ss_pred             cEEEE-CCCHHHHHHHHHHHHcCCeEEEEecc
Confidence            46665 99999999999999999999988533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	410
1wdw_B	385	Structural Basis Of Mutual Activation Of The Trypto		4e-61
1v8z_A	388	X-Ray Crystal Structure Of The Tryptophan Synthase		4e-61
2o2e_A	422	Mycobacterium Tuberculosis Tryptophan Synthase Beta		4e-59
1x1q_A	418	Crystal Structure Of Tryptophan Synthase Beta Chain		2e-56
1k8x_B	397	Crystal Structure Of Alphat183v Mutant Of Tryptopha		2e-51
1qop_B	396	Crystal Structure Of Wild-type Tryptophan Synthase		2e-51
3pr2_B	391	Tryptophan Synthase Indoline Quinonoid Structure Wi		2e-51
1kfe_B	394	Crystal Structure Of Alphat183v Mutant Of Tryptopha		2e-51
1a50_B	396	Crystal Structure Of Wild-Type Tryptophan Synthase		2e-51
1ttp_B	397	Tryptophan Synthase (E.C.4.2.1.20) In The Presence		2e-51
1a5a_B	397	Cryo-Crystallography Of A True Substrate, Indole-3-		2e-51
2dh5_A	397	Crystal Structure Of E. Coli Holo-Trpb Length = 397		2e-51
1qoq_B	396	Crystal Structure Of Wild-type Tryptophan Synthase		3e-51
2j9y_B	397	Tryptophan Synthase Q114n Mutant In Complex With Co		4e-51
1k7x_B	396	Crystal Structure Of The Beta-Ser178pro Mutant Of T		5e-51
2tys_B	397	Crystal Structures Of Mutant (Betak87t) Tryptophan		7e-51
1ubs_B	397	Tryptophan Synthase (E.C.4.2.1.20) With A Mutation		7e-51
1fuy_B	396	Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTA		7e-51
2j9z_B	397	Tryptophan Synthase T110 Mutant Complex Length = 39		1e-50

>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan Synthase A2b2 Complex From A Hyperthermophile, Pyrococcus Furiosus Length = 385

Iteration: 1
 Score =  231 bits (590), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 4/207 (1%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+YY K ++  + G+KI+LKREDL   GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48  GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGV+TA +  LL ++  IY+G  D +RQ +NV ++KLLG  V  V  G+  LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167
Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           A++DW      +HYLIG+  GPHPYPTIVRDFQS+IG E   Q L         I+ACVG
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVG 227
Query: 373 GGSNALGIFYTFINS-NFKLVAIESGG 398
           GGSNA+GIFY F+N    KLV +E+GG
Sbjct: 228 GGSNAMGIFYPFVNDKKVKLVGVEAGG 254

>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2 Subunit From Hyperthermophile, Pyrococcus Furiosus Length = 388

Iteration: 1
 Score =  231 bits (590), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 4/207 (1%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+YY K ++  + G+KI+LKREDL   GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48  GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGV+TA +  LL ++  IY+G  D +RQ +NV ++KLLG  V  V  G+  LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167
Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
           A++DW      +HYLIG+  GPHPYPTIVRDFQS+IG E   Q L         I+ACVG
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVG 227
Query: 373 GGSNALGIFYTFINS-NFKLVAIESGG 398
           GGSNA+GIFY F+N    KLV +E+GG
Sbjct: 228 GGSNAMGIFYPFVNDKKVKLVGVEAGG 254

>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Subunit Dimer (Apoform) Length = 422

Iteration: 1
 Score =  225 bits (573), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 106/211 (50%), Positives = 146/211 (69%), Gaps = 4/211 (1%)
Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 251
           +N  GRP+P+Y    +S     ++IFLKREDLN TG+HK+NN + Q+LLA+ + K R+I 
Sbjct: 75  ANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIA 134
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKE 309
           ETGAG HGV+TAT+C LL L+ +IY+G  D  RQ +NV +++LLG  V  VQ G+  LK+
Sbjct: 135 ETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKD 194
Query: 310 AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN-KKYIL 368
           A+NEA +DW  N  N++Y  GTA+GPHP+PT+VRDFQ IIG E   Q+          ++
Sbjct: 195 AINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVV 254
Query: 369 ACVGGGSNALGIFYTFINS-NFKLVAIESGG 398
           ACVGGGSNA+GIF+ F++    +LV  E+ G
Sbjct: 255 ACVGGGSNAIGIFHAFLDDPGVRLVGFEAAG 285

>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From Thermus Thermophilus Hb8 Length = 418

Iteration: 1
 Score =  216 bits (549), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/220 (47%), Positives = 146/220 (66%), Gaps = 10/220 (4%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
           GRPTP+Y+ K +S    G+++FLKREDL  TGAHK+NN++ Q+LLA+   K+R+I ETGA
Sbjct: 75  GRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRXGKRRVIAETGA 134
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
           G HGVS AT   L  LE ++Y GE D +RQ +NV + KLLG  V  V  G+  LK+A NE
Sbjct: 135 GQHGVSVATVAALFGLECVVYXGEEDVRRQALNVFRXKLLGAEVRPVAAGSRTLKDATNE 194
Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK--KYILACV 371
           AI+DW  N+  + Y++G+  GPHPYP  VRDFQS+IG E+ +Q +   + +    ++A V
Sbjct: 195 AIRDWITNVRTTFYILGSVVGPHPYPXXVRDFQSVIGEEVKRQ-SLELFGRLPDALIAAV 253
Query: 372 GGGSNALGIFYTFI---NSNFKLVAIESG--GISKKRTAS 406
           GGGSNA+G+F  F        KL+ +E+   G+S  R A+
Sbjct: 254 GGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAA 293

>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium Length = 397

Iteration: 1
 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 51  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259

>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Propanol Phosphate Length = 396

Iteration: 1
 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 50  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 169 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258

>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9 Inhibitor In Alpha Site Length = 391

Iteration: 1
 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 49  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 107
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 108 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 167
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 168 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 227
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 228 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 257

>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium With L-ser Bound To The Beta Site Length = 394

Iteration: 1
 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 50  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 169 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258

>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase Complexed With 5- Fluoroindole Propanol Phosphate Length = 396

Iteration: 1
 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 50  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 169 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258

>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of Cesium, Room Temperature Length = 397

Iteration: 1
 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 51  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259

>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate, Indole-3-Glycerol Phosphate, Bound To A Mutant (Alphad60n) Tryptophan Synthase Alpha2beta2 Complex Reveals The Correct Orientation Of Active Site Alpha Glu 49 Length = 397

Iteration: 1
 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 51  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259

>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb Length = 397

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/210 (48%), Positives = 140/210 (66%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+     + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 51  NYAGRPTALTKCQNITAGTN-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L         ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILEREGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN +N  L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINETNVGLIGVEPGG 259

>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Glycerol Phosphate Length = 396

Iteration: 1
 Score =  199 bits (505), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 50  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA+ DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 169 CNEALADWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258

>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound Ii Length = 397

Iteration: 1
 Score =  198 bits (504), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 51  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 110 TGAGNHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259

>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of Tryptophan Synthase Length = 396

Iteration: 1
 Score =  198 bits (503), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 50  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DW  +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 169 CNEALRDWPGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258

>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan Synthase Alpha2 Beta2 Complex With Ligands Bound To The Active Sites Of The Alpha And Beta Subunits Reveal Ligand-Induced Conformational Changes Length = 397

Iteration: 1
 Score =  197 bits (502), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAH  N  + Q+LLAK + K  II E
Sbjct: 51  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259

>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys 87->thr In The B Subunit And In The Presence Of Ligand L-Serine Length = 397

Iteration: 1
 Score =  197 bits (502), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAH  N  + Q+LLAK + K  II E
Sbjct: 51  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259

>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF TRYPTOPHAN Synthase Complexed With 5-Fluoro-Indole-Propanol Phosphate Length = 396

Iteration: 1
 Score =  197 bits (502), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 50  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
           TGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+ 
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDL 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 169 WNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258

>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex Length = 397

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
           N  GRPT +  C+NI+   + + ++LKREDL   GAHK N  + Q+LLAK + K  II E
Sbjct: 51  NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
            GAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A
Sbjct: 110 VGAGNHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
            NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q L+        ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
           CVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	410
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	1e-105
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	9e-98
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	1e-105
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	1e-97
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	1e-105
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	2e-97
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	1e-104
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	1e-97
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	6e-23
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	4e-21
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	3e-14
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	1e-13
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	2e-13
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	6e-13
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	2e-12
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	3e-12
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	1e-11
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	1e-11
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	6e-11
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	6e-11
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	6e-11
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	3e-10
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	8e-10
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	2e-09
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	3e-09
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	1e-08
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	1e-08
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	5e-08
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	2e-08
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	9e-08
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	4e-08
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	2e-07
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	6e-07
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	5e-07
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	7e-07
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	6e-07
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	6e-07
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	1e-06
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	5e-06
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	6e-06
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	6e-06
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	2e-05
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Length = 388

 Score =  316 bits (811), Expect = e-105
 Identities = 116/228 (50%), Positives = 152/228 (66%), Gaps = 17/228 (7%)

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
            N+Y K +            GRPTP+YY K ++  + G+KI+LKREDL   GAHK NN+I
Sbjct: 39  LNYYLKTWA-----------GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAI 87

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
            Q+LLAKF+ K R+I ETGAG HGV+TA +  LL ++  IY+G  D +RQ +NV ++KLL
Sbjct: 88  GQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLL 147

Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
           G  V  V  G+  LK+A+NEA++DW      +HYLIG+  GPHPYPTIVRDFQS+IG E 
Sbjct: 148 GANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREA 207

Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
             Q+      +    I+ACVGGGSNA+GIFY F+N    KLV +E+GG
Sbjct: 208 KAQI-LEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGG 254

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Length = 388

 Score =  296 bits (760), Expect = 9e-98
 Identities = 102/188 (54%), Positives = 133/188 (70%), Gaps = 5/188 (2%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+YY K ++  + G+KI+LKREDL   GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48  GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV+TA +  LL ++  IY+G  D +RQ +NV ++KLLG  V  V  G+  LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
           A++DW      +HYLIG+  GPHPYPTIVRDFQS+IG E   Q+      +    I+ACV
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQI-LEAEGQLPDVIVACV 226

Query: 189 GGGSNALG 196
           GGGSNA+G
Sbjct: 227 GGGSNAMG 234

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Length = 422

 Score =  316 bits (813), Expect = e-105
 Identities = 106/228 (46%), Positives = 147/228 (64%), Gaps = 17/228 (7%)

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
            +     Y            GRP+P+Y    +S     ++IFLKREDLN TG+HK+NN +
Sbjct: 70  LDRLQANYA-----------GRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVL 118

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
            Q+LLA+ + K R+I ETGAG HGV+TAT+C LL L+ +IY+G  D  RQ +NV +++LL
Sbjct: 119 GQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLL 178

Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
           G  V  VQ G+  LK+A+NEA +DW  N  N++Y  GTA+GPHP+PT+VRDFQ IIG E 
Sbjct: 179 GAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEA 238

Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
             Q+      +    ++ACVGGGSNA+GIF+ F++    +LV  E+ G
Sbjct: 239 RVQI-QGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAG 285

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Length = 422

 Score =  297 bits (762), Expect = 1e-97
 Identities = 98/188 (52%), Positives = 133/188 (70%), Gaps = 5/188 (2%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRP+P+Y    +S     ++IFLKREDLN TG+HK+NN + Q+LLA+ + K R+I ETGA
Sbjct: 79  GRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGA 138

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV+TAT+C LL L+ +IY+G  D  RQ +NV +++LLG  V  VQ G+  LK+A+NE
Sbjct: 139 GQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINE 198

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
           A +DW  N  N++Y  GTA+GPHP+PT+VRDFQ IIG E   Q+      +    ++ACV
Sbjct: 199 AFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQI-QGQAGRLPDAVVACV 257

Query: 189 GGGSNALG 196
           GGGSNA+G
Sbjct: 258 GGGSNAIG 265

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Length = 396

 Score =  315 bits (810), Expect = e-105
 Identities = 102/228 (44%), Positives = 144/228 (63%), Gaps = 18/228 (7%)

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
           F    K Y            GRPT +  C+NI+     + ++LKREDL   GAHK N  +
Sbjct: 44  FADLLKNYA-----------GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVL 91

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
            Q+LLAK + K  II ETGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+
Sbjct: 92  GQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 151

Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
           G  V  V  G+  LK+A NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E 
Sbjct: 152 GAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEET 211

Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
             Q+  +   +    ++ACVGGGSNA+G+F  FIN ++  L+ +E GG
Sbjct: 212 KAQI-LDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGG 258

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Length = 396

 Score =  295 bits (758), Expect = 2e-97
 Identities = 91/188 (48%), Positives = 128/188 (68%), Gaps = 6/188 (3%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPT +  C+NI+     + ++LKREDL   GAHK N  + Q+LLAK + K  II ETGA
Sbjct: 53  GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGA 111

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G+  LK+A NE
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNE 171

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
           A++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q+  +   +    ++ACV
Sbjct: 172 ALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQI-LDKEGRLPDAVIACV 230

Query: 189 GGGSNALG 196
           GGGSNA+G
Sbjct: 231 GGGSNAIG 238

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Length = 418

 Score =  313 bits (804), Expect = e-104
 Identities = 103/230 (44%), Positives = 149/230 (64%), Gaps = 19/230 (8%)

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
            + Y +++            GRPTP+Y+ K +S    G+++FLKREDL  TGAHK+NN++
Sbjct: 66  LDHYLRQFA-----------GRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTL 114

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
            Q+LLA+ + K+R+I ETGAG HGVS AT   L  LE ++Y+GE D +RQ +NV ++KLL
Sbjct: 115 GQALLARRMGKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLL 174

Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
           G  V  V  G+  LK+A NEAI+DW  N+  + Y++G+  GPHPYP +VRDFQS+IG E+
Sbjct: 175 GAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEV 234

Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFIN---SNFKLVAIESGG 398
            +Q     + +    ++A VGGGSNA+G+F  F        KL+ +E+ G
Sbjct: 235 KRQS-LELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAG 283

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Length = 418

 Score =  296 bits (761), Expect = 1e-97
 Identities = 96/188 (51%), Positives = 134/188 (71%), Gaps = 5/188 (2%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+Y+ K +S    G+++FLKREDL  TGAHK+NN++ Q+LLA+ + K+R+I ETGA
Sbjct: 75  GRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGKRRVIAETGA 134

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
           G HGVS AT   L  LE ++Y+GE D +RQ +NV ++KLLG  V  V  G+  LK+A NE
Sbjct: 135 GQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNE 194

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
           AI+DW  N+  + Y++G+  GPHPYP +VRDFQS+IG E+ +Q     + +    ++A V
Sbjct: 195 AIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQS-LELFGRLPDALIAAV 253

Query: 189 GGGSNALG 196
           GGGSNA+G
Sbjct: 254 GGGSNAIG 261

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338

 Score = 97.6 bits (243), Expect = 6e-23
 Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 17/215 (7%)

Query: 195 LGRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRII 250
              PTPI     +S  L G   ++ KRED N   A   N +     L   A       ++
Sbjct: 12  TFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLV 71

Query: 251 CETGAGM-HGVSTATSCCLLNLESIIYIGE-----NDYKRQNINVKKIKLLGGTVYLVQY 304
              G         A     L ++ ++         +    +  N++  ++LG  V LV  
Sbjct: 72  SIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPD 131

Query: 305 G--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFY 362
           G         E   +         Y I      HP   +          E+  Q     +
Sbjct: 132 GFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGL---GFVGFAEEVRAQEAELGF 188

Query: 363 NKKYILACVGGGSNALGIFYTFI--NSNFKLVAIE 395
              Y++ C   GS   G+   F       +++ ++
Sbjct: 189 KFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVD 223

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338

 Score = 92.6 bits (230), Expect = 4e-21
 Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 15/197 (7%)

Query: 13  GRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRIIC 68
             PTPI     +S  L G   ++ KRED N   A   N +     L   A       ++ 
Sbjct: 13  FGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVS 72

Query: 69  ETGAGM-HGVSTATSCCLLNLESIIYIGE-----NDYKRQNINVKKIKLLGGTVYLVQYG 122
             G         A     L ++ ++         +    +  N++  ++LG  V LV  G
Sbjct: 73  IGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG 132

Query: 123 --NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
                    E   +         Y I      HP   +          E+  Q     + 
Sbjct: 133 FDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGL---GFVGFAEEVRAQEAELGFK 189

Query: 181 KKYILACVGGGSNALGR 197
             Y++ C   GS   G 
Sbjct: 190 FDYVVVCSVTGSTQAGM 206

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341

 Score = 72.4 bits (177), Expect = 3e-14
 Identities = 33/214 (15%), Positives = 62/214 (28%), Gaps = 22/214 (10%)

Query: 195 LGRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRII 250
              P+PI     +S  L     ++ KRED N   A   N       +           ++
Sbjct: 12  TFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLV 71

Query: 251 CETGA-GMHGVSTATSCCLLNLESIIYI--------GENDYKRQNINVKKIKLLGGTVYL 301
              G         A     L  + ++           E D   +  N++  +++G  V +
Sbjct: 72  SIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV 131

Query: 302 V--QYGNLKEAMNEAIKDWSNNILNSHYLI--GTASGPHPYPTIVRDFQSIIGYEIHQQL 357
           +   +                +  +  Y I  G +   +     V     +I  E+   +
Sbjct: 132 IEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGI 191

Query: 358 NFNFYNKKYILACVGGGSNALGIFYTFINSNFKL 391
            F+      I+ C   GS   GI         + 
Sbjct: 192 KFD-----KIVVCCVTGSTTAGILAGMAQYGRQD 220

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 39/268 (14%), Positives = 76/268 (28%), Gaps = 23/268 (8%)

Query: 13  GRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRIIC 68
             P+PI     +S  L     ++ KRED N   A   N       +           ++ 
Sbjct: 13  FGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVS 72

Query: 69  ETGA-GMHGVSTATSCCLLNLESIIYI--------GENDYKRQNINVKKIKLLGGTVYLV 119
             G         A     L  + ++           E D   +  N++  +++G  V ++
Sbjct: 73  IGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVI 132

Query: 120 --QYGNLKEAMNEAIKDWSNNILNSHYLI--GTASGPHPYPTIVRDFQSIIGYEIHQQLN 175
              +                +  +  Y I  G +   +     V     +I  E+   + 
Sbjct: 133 EDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIK 192

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
           F+      I+ C   GS   G    +       +++     F   +    T     NN+ 
Sbjct: 193 FD-----KIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQT-LRIANNTA 246

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTA 263
               +    K   +        +GV   
Sbjct: 247 KLIGVEHEFKDFTLDTRFAYPCYGVPNE 274

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 30/206 (14%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNF--------TGAHKMNNSIAQSL--------- 239
           RPTP+    +++N+    KI +K E   F         GA+ +   + +           
Sbjct: 43  RPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSF 102

Query: 240 --LAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLL 295
             L   + +K     T  G HG   A +   L   ++IY+ +     +        I  L
Sbjct: 103 EHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDA-----ILNL 157

Query: 296 GGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY-PTIVRDFQSIIGYEIH 354
           G    +    N  + +   ++    +      +  TA   +   PT +    + +  E  
Sbjct: 158 GAECIVTD-MNYDDTVRLTMQHAQQH--GWEVVQDTAWEGYTKIPTWIMQGYATLADEAV 214

Query: 355 QQLNFNFYNKKYILACVGGGSNALGI 380
           +Q+        ++L   G G+ A G+
Sbjct: 215 EQMREMGVTPTHVLLQAGVGAMAGGV 240

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 30/205 (14%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNF--------TGAHKMNNSIAQSL--------- 56
           RPTP+    +++N+    KI +K E   F         GA+ +   + +           
Sbjct: 43  RPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSF 102

Query: 57  --LAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLL 112
             L   + +K     T  G HG   A +   L   ++IY+ +     +        I  L
Sbjct: 103 EHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDA-----ILNL 157

Query: 113 GGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY-PTIVRDFQSIIGYEIH 171
           G    +    N  + +   ++    +      +  TA   +   PT +    + +  E  
Sbjct: 158 GAECIVTD-MNYDDTVRLTMQHAQQH--GWEVVQDTAWEGYTKIPTWIMQGYATLADEAV 214

Query: 172 QQLNFNFYNKKYILACVGGGSNALG 196
           +Q+        ++L   G G+ A G
Sbjct: 215 EQMREMGVTPTHVLLQAGVGAMAGG 239

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 39/197 (19%), Positives = 65/197 (32%), Gaps = 46/197 (23%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGA-------HKMNNSIAQSLLAKFLKKKRIIC 251
           TPI     +S +  G+ ++LK +    +G+       H       Q            +C
Sbjct: 47  TPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ-------GCAHFVC 98

Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 308
            + AG  G++ A +   L + + I +             ++++K  G T      G  L 
Sbjct: 99  SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALT-----IERLKNEGATC--KVVGELLD 150

Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 363
           EA   A             L     G     P+  P I  +  + I  E+ + L      
Sbjct: 151 EAFELAKA-----------LAKNNPGWVYIPPFDDPLIW-EGHASIVKELKETLWEKPG- 197

Query: 364 KKYILACVGGGSNALGI 380
              I   VGGG    G+
Sbjct: 198 --AIALSVGGGGLLCGV 212

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 46/191 (24%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGA-------HKMNNSIAQSLLAKFLKKKRIIC 68
           TPI     +S +  G+ ++LK +    +G+       H       Q            +C
Sbjct: 47  TPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ-------GCAHFVC 98

Query: 69  ETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 125
            + AG  G++ A +   L + + I +             ++++K  G T      G  L 
Sbjct: 99  SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALT-----IERLKNEGATC--KVVGELLD 150

Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 180
           EA   A             L     G     P+  P I  +  + I  E+ + L      
Sbjct: 151 EAFELAKA-----------LAKNNPGWVYIPPFDDPLIW-EGHASIVKELKETLWEKPG- 197

Query: 181 KKYILACVGGG 191
              I   VGGG
Sbjct: 198 --AIALSVGGG 206

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 33/192 (17%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
             +P+   + +S+ L G   ++KRED     + K+    N ++   L++    K +I  +
Sbjct: 59  IESPLELAEKLSDRL-GVNFYIKREDKQRVFSFKLRGAYNMMSN--LSREELDKGVITAS 115

Query: 254 GAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
            AG H  GV  A +   LN  + I +         I +  ++ LGG V  V YG    EA
Sbjct: 116 -AGNHAQGV--ALAGQRLNCVAKIVMPTTT---PQIKIDAVRALGGDV--VLYGKTFDEA 167

Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
              A++    + L     I       P+  P +++  Q  IG EI++QL     +   + 
Sbjct: 168 QTHALELSEKDGLK---YI------PPFDDPGVIKG-QGTIGTEINRQLK----DIHAVF 213

Query: 369 ACVGGGSNALGI 380
             VGGG    G+
Sbjct: 214 IPVGGGGLIAGV 225

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 33/186 (17%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
             +P+   + +S+ L G   ++KRED     + K+    N ++   L++    K +I  +
Sbjct: 59  IESPLELAEKLSDRL-GVNFYIKREDKQRVFSFKLRGAYNMMSN--LSREELDKGVITAS 115

Query: 71  GAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
            AG H  GV  A +   LN  + I +         I +  ++ LGG V  V YG    EA
Sbjct: 116 -AGNHAQGV--ALAGQRLNCVAKIVMPTTT---PQIKIDAVRALGGDV--VLYGKTFDEA 167

Query: 128 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
              A++    + L     I       P+  P +++  Q  IG EI++QL     +   + 
Sbjct: 168 QTHALELSEKDGLK---YI------PPFDDPGVIKG-QGTIGTEINRQLK----DIHAVF 213

Query: 186 ACVGGG 191
             VGGG
Sbjct: 214 IPVGGG 219

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 46/191 (24%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGA-------HKMNNSIAQSLLAKFLKKKRIIC 68
           TP+     +S +  G  +FLK E++  +G+       H       +         + ++C
Sbjct: 8   TPLLESWALSQVA-GMPVFLKCENVQPSGSFKIRGIGHFCQEMAKK-------GCRHLVC 59

Query: 69  ETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 125
            +  G  G++ A +   L + + I + E+          V++++  G  V     G    
Sbjct: 60  SS-GGNAGIAAAYAARKLGIPATIVLPESTSLQV-----VQRLQGEGAEV--QLTGKVWD 111

Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 180
           EA   A +            +    G     P+  P I     + +  E+   L      
Sbjct: 112 EANLRAQE------------LAKRDGWENVPPFDHPLIW-KGHASLVQELKAVLRTPPG- 157

Query: 181 KKYILACVGGG 191
              +LA  GGG
Sbjct: 158 -ALVLAVGGGG 167

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 46/191 (24%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGA-------HKMNNSIAQSLLAKFLKKKRIIC 251
           TP+     +S +  G  +FLK E++  +G+       H       +         + ++C
Sbjct: 8   TPLLESWALSQVA-GMPVFLKCENVQPSGSFKIRGIGHFCQEMAKK-------GCRHLVC 59

Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 308
            +  G  G++ A +   L + + I + E+          V++++  G  V     G    
Sbjct: 60  SS-GGNAGIAAAYAARKLGIPATIVLPESTSLQV-----VQRLQGEGAEV--QLTGKVWD 111

Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 363
           EA   A +            +    G     P+  P I     + +  E+   L      
Sbjct: 112 EANLRAQE------------LAKRDGWENVPPFDHPLIW-KGHASLVQELKAVLRTPPG- 157

Query: 364 KKYILACVGGG 374
              +LA  GGG
Sbjct: 158 -ALVLAVGGGG 167

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 255
           TP+    N+S    G  I LK E LN TG+ K   M  ++A +  A    ++ ++C +  
Sbjct: 39  TPLIAATNLSKQT-GCTIHLKVEGLNPTGSFKDRGM--TMAVT-DALAHGQRAVLCAS-T 93

Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 315
           G    S A       +   + I +       +   +  + G  +  +  GN  + +  A 
Sbjct: 94  GNTSASAAAYAARAGITCAVLIPQGKIAMGKL--AQAVMHGAKIIQID-GNFDDCLELAR 150

Query: 316 K-----DW--SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
           K           N +N   + G  +                 +EI   L           
Sbjct: 151 KMAADFPTISLVNSVNPVRIEGQKT---------------AAFEIVDVLGTAP---DVHA 192

Query: 369 ACVGGGSNALGIFYTF 384
             VG   N    +  +
Sbjct: 193 LPVGNAGNITAYWKGY 208

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 36/191 (18%), Positives = 61/191 (31%), Gaps = 36/191 (18%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 72
           TP+    N+S    G  I LK E LN TG+ K   M  ++A +  A    ++ ++C +  
Sbjct: 39  TPLIAATNLSKQT-GCTIHLKVEGLNPTGSFKDRGM--TMAVT-DALAHGQRAVLCAS-T 93

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
           G    S A       +   + I +       +   +  + G  +  +  GN  + +  A 
Sbjct: 94  GNTSASAAAYAARAGITCAVLIPQGKIAMGKL--AQAVMHGAKIIQID-GNFDDCLELAR 150

Query: 133 K-----DW--SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
           K           N +N   + G  +                 +EI   L           
Sbjct: 151 KMAADFPTISLVNSVNPVRIEGQKT---------------AAFEIVDVLGTAP---DVHA 192

Query: 186 ACVGGGSNALG 196
             VG   N   
Sbjct: 193 LPVGNAGNITA 203

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 33/192 (17%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
           + TP+   + +S+ L  + I +KRED     + K+      +A   L +  K   +I  +
Sbjct: 30  QVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAG--LTEEQKAHGVITAS 86

Query: 254 GAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
            AG H  GV  A S   L ++++I +         I V  ++  GG V  + +G N  EA
Sbjct: 87  -AGNHAQGV--AFSSARLGVKALIVMPTATAD---IKVDAVRGFGGEV--LLHGANFDEA 138

Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
             +AI+            +       P+  P ++   Q  +  E+ QQ      +   + 
Sbjct: 139 KAKAIELSQQQGFT---WV------PPFDHPMVIAG-QGTLALELLQQDA----HLDRVF 184

Query: 369 ACVGGGSNALGI 380
             VGGG  A G+
Sbjct: 185 VPVGGGGLAAGV 196

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 33/186 (17%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
           + TP+   + +S+ L  + I +KRED     + K+      +A   L +  K   +I  +
Sbjct: 30  QVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAG--LTEEQKAHGVITAS 86

Query: 71  GAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
            AG H  GV  A S   L ++++I +         I V  ++  GG V  + +G N  EA
Sbjct: 87  -AGNHAQGV--AFSSARLGVKALIVMPTATAD---IKVDAVRGFGGEV--LLHGANFDEA 138

Query: 128 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
             +AI+            +       P+  P ++   Q  +  E+ QQ      +   + 
Sbjct: 139 KAKAIELSQQQGFT---WV------PPFDHPMVIAG-QGTLALELLQQDA----HLDRVF 184

Query: 186 ACVGGG 191
             VGGG
Sbjct: 185 VPVGGG 190

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 41/199 (20%)

Query: 199 TPIYYCKNISNILK-GSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETG 254
           TP+   K      K G +++ K E LN TG+ K   M  ++A S  A     + + C + 
Sbjct: 29  TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGM--TLAVS-KAVEGGAQAVACAS- 84

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIK---LLGGTVYLVQYGNLKEAM 311
            G    S A       + +I+ +         + + K+    + G  +  V+ GN  +A+
Sbjct: 85  TGNTAASAAAYAARAGILAIVVLPAG-----YVALGKVAQSLVHGARIVQVE-GNFDDAL 138

Query: 312 NEAIK-----DWSN-NILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK 365
               K       +  N +N H L G  +               + +E+  +L        
Sbjct: 139 RLTQKLTEAFPVALVNSVNPHRLEGQKT---------------LAFEVVDELGDAP---H 180

Query: 366 YILACVGGGSNALGIFYTF 384
           Y    VG   N    +  +
Sbjct: 181 YHALPVGNAGNITAHWMGY 199

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 41/194 (21%)

Query: 16  TPIYYCKNISNILK-GSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETG 71
           TP+   K      K G +++ K E LN TG+ K   M  ++A S  A     + + C + 
Sbjct: 29  TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGM--TLAVS-KAVEGGAQAVACAS- 84

Query: 72  AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIK---LLGGTVYLVQYGNLKEAM 128
            G    S A       + +I+ +         + + K+    + G  +  V+ GN  +A+
Sbjct: 85  TGNTAASAAAYAARAGILAIVVLPAG-----YVALGKVAQSLVHGARIVQVE-GNFDDAL 138

Query: 129 NEAIK-----DWSN-NILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK 182
               K       +  N +N H L G  +               + +E+  +L        
Sbjct: 139 RLTQKLTEAFPVALVNSVNPHRLEGQKT---------------LAFEVVDELGDAP---H 180

Query: 183 YILACVGGGSNALG 196
           Y    VG   N   
Sbjct: 181 YHALPVGNAGNITA 194

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 47/223 (21%)

Query: 199 TPIYYCKNISN-ILKGSKIFLKREDLNFTGAHK-----MNNSIAQSLLAKFLKKKRIICE 252
           + +++ +      L  + +++K   ++ TG+ K     +  S    L         + C 
Sbjct: 131 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 190

Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKK---IKLLGGTVYLVQYGNLKE 309
           +  G    + +  C    + SI+++  N      I++ +       G  V  +   +   
Sbjct: 191 S-TGDTSAALSAYCASAGIPSIVFLPAN-----KISMAQLVQPIANGAFVLSID-TDFDG 243

Query: 310 AMNEAIK-----DWS-NNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 363
            M    +          N LNS  L G  +                  EI QQ ++    
Sbjct: 244 CMKLIREITAELPIYLANSLNSLRLEGQKT---------------AAIEILQQFDWQV-- 286

Query: 364 KKYILACVGGGSNALGI---FYTFINSNF-----KLVAIESGG 398
             +++   G   N       F             ++V  ++  
Sbjct: 287 PDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAAN 329

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486

 Score = 52.9 bits (127), Expect = 9e-08
 Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 39/196 (19%)

Query: 16  TPIYYCKNISN-ILKGSKIFLKREDLNFTGAHK-----MNNSIAQSLLAKFLKKKRIICE 69
           + +++ +      L  + +++K   ++ TG+ K     +  S    L         + C 
Sbjct: 131 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 190

Query: 70  TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKK---IKLLGGTVYLVQYGNLKE 126
           +  G    + +  C    + SI+++  N      I++ +       G  V  +   +   
Sbjct: 191 S-TGDTSAALSAYCASAGIPSIVFLPAN-----KISMAQLVQPIANGAFVLSID-TDFDG 243

Query: 127 AMNEAIK-----DWS-NNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
            M    +          N LNS  L G  +                  EI QQ ++    
Sbjct: 244 CMKLIREITAELPIYLANSLNSLRLEGQKT---------------AAIEILQQFDWQV-- 286

Query: 181 KKYILACVGGGSNALG 196
             +++   G   N   
Sbjct: 287 PDWVIVPGGNLGNIYA 302

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 199 TPIYYCKNISNIL-KGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETG 254
           TP+    N++  +    KI+LK E LN TG+ K   M  ++A S  A    K+ +IC + 
Sbjct: 31  TPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGM--TLAISK-AVEAGKRAVICAS- 86

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIK---LLGGTVYLVQYGNLKEAM 311
            G    S A       L + + + +       + + K+    + G  V  +Q G   +A+
Sbjct: 87  TGNTSASAAAYAARAGLRAYVLLPKG-----AVAIGKLSQAMIYGAKVLAIQ-GTFDDAL 140

Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACV 371
           N   K      +  ++ +   +  +PY     + Q    +EI   L        Y    V
Sbjct: 141 NIVRK------IGENFPVEIVNSVNPYRI---EGQKTAAFEICDTLGEAP---DYHFIPV 188

Query: 372 GGGSNALGIFYTF 384
           G   N    +  F
Sbjct: 189 GNAGNITAYWKGF 201

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 17/200 (8%)

Query: 198 PTPIYYCKNISNILKGSKIFLKREDLN---FTG--AHKMNNSIAQSLLAKFLKKKRIICE 252
            TPI Y  NIS  + G+ +++KR+DL      G    K+   +  +L         I   
Sbjct: 21  ETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA--DVVITVG 77

Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ-YGNLKEAM 311
                H   T  +   L L++I+ +   +  + N  + KI  +   VY  +    L +  
Sbjct: 78  AVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYA 137

Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACV 371
            E  ++        + +    + P      VR        EI  Q    F     I+   
Sbjct: 138 EEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVG-----EIATQSEVKF---DSIVVAA 189

Query: 372 GGGSNALGIFYTFINSNFKL 391
           G G    G+       N  +
Sbjct: 190 GSGGTLAGLSLGLSILNEDI 209

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 17/188 (9%)

Query: 15  PTPIYYCKNISNILKGSKIFLKREDLN---FTG--AHKMNNSIAQSLLAKFLKKKRIICE 69
            TPI Y  NIS  + G+ +++KR+DL      G    K+   +  +L         I   
Sbjct: 21  ETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA--DVVITVG 77

Query: 70  TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ-YGNLKEAM 128
                H   T  +   L L++I+ +   +  + N  + KI  +   VY  +    L +  
Sbjct: 78  AVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYA 137

Query: 129 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACV 188
            E  ++        + +    + P      VR        EI  Q    F     I+   
Sbjct: 138 EEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVG-----EIATQSEVKF---DSIVVAA 189

Query: 189 GGGSNALG 196
           G G    G
Sbjct: 190 GSGGTLAG 197

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 18/209 (8%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
            PTP+ Y   +S+ L G +I++KR+D+     G +K+     + L+A  L++      T 
Sbjct: 31  APTPLEYLPRLSDYL-GREIYIKRDDVTPIAMGGNKLR--KLEFLVADALREGADTLITA 87

Query: 255 AGM---HGVSTATSCCLLNLESIIYI-----GENDYKRQNINVKKIKLLGGTVYLVQYGN 306
             +   H   TA     L L  +  +        +    N N   + L    + +     
Sbjct: 88  GAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT 147

Query: 307 LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY 366
             +A  + +           Y+I    G                 EI QQ          
Sbjct: 148 DPDAQLQTLATRIEAQGFRPYVI-PVGGSSALGA---MGYVESALEIAQQCEEVVGLSSV 203

Query: 367 ILACVGGGSNALGIFYT-FINSNFKLVAI 394
           ++A    G++A        +  + +L+ +
Sbjct: 204 VVASGSAGTHAGLAVGLEHLMPDVELIGV 232

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342

 Score = 49.7 bits (118), Expect = 7e-07
 Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 17/189 (8%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHKMNNSIAQSLLAKFLKKKRIICETG 71
            PTP+ Y   +S+ L G +I++KR+D+     G +K+     + L+A  L++      T 
Sbjct: 31  APTPLEYLPRLSDYL-GREIYIKRDDVTPIAMGGNKLR--KLEFLVADALREGADTLITA 87

Query: 72  AGM---HGVSTATSCCLLNLESIIYI-----GENDYKRQNINVKKIKLLGGTVYLVQYGN 123
             +   H   TA     L L  +  +        +    N N   + L    + +     
Sbjct: 88  GAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT 147

Query: 124 LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY 183
             +A  + +           Y+I    G                 EI QQ          
Sbjct: 148 DPDAQLQTLATRIEAQGFRPYVI-PVGGSSALGA---MGYVESALEIAQQCEEVVGLSSV 203

Query: 184 ILACVGGGS 192
           ++A    G+
Sbjct: 204 VVASGSAGT 212

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 38/189 (20%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 70
             TP+   + +  +L G ++ LK E L  TG+ K     +          L+  + +   
Sbjct: 19  HRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSKALA------LENPKGLLAV 71

Query: 71  GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
            +G H    A +  +L +++++ + E+   YK+        +  G  V  V  G   K  
Sbjct: 72  SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKAC-----ARAYGAEV--VDRGVTAKNR 124

Query: 128 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 182
              A              +   +G    HP+  P ++   Q   G E+  Q         
Sbjct: 125 EEVARA------------LQEETGYALIHPFDDPLVIAG-QGTAGLELLAQAGRMGVFPG 171

Query: 183 YILACVGGG 191
            +LA VGGG
Sbjct: 172 AVLAPVGGG 180

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 38/189 (20%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 253
             TP+   + +  +L G ++ LK E L  TG+ K     +          L+  + +   
Sbjct: 19  HRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSKALA------LENPKGLLAV 71

Query: 254 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
            +G H    A +  +L +++++ + E+   YK+        +  G  V  V  G   K  
Sbjct: 72  SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKAC-----ARAYGAEV--VDRGVTAKNR 124

Query: 311 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 365
              A              +   +G    HP+  P ++   Q   G E+  Q         
Sbjct: 125 EEVARA------------LQEETGYALIHPFDDPLVIAG-QGTAGLELLAQAGRMGVFPG 171

Query: 366 YILACVGGG 374
            +LA VGGG
Sbjct: 172 AVLAPVGGG 180

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 71/232 (30%)

Query: 198 PTPIYYCKNISNIL-------KGSKIFLKREDLNFT--------GAHKM----------- 231
            + +     +   L          ++ LK++             G +++           
Sbjct: 78  ESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEA 137

Query: 232 --------NNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--D 281
                    + +      +F  +  I   +  G  G+S       +  +  +++  +   
Sbjct: 138 GLLTLDDDYSKLLSPEFKQFFSQYSIAVGS-TGNLGLSIGIMSARIGFKVTVHMSADARA 196

Query: 282 YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 341
           +K       K++  G TV   +  +   A+ E  K               A+   P    
Sbjct: 197 WK-----KAKLRSHGVTVVEYE-QDYGVAVEEGRK---------------AAQSDPNCFF 235

Query: 342 VRDF--------QSIIGYEIHQQLNFNFYNKK-----YILACVGGGSNALGI 380
           + D          S+ G  +  Q              ++    G G    G+
Sbjct: 236 IDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGV 287

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 71/231 (30%)

Query: 15  PTPIYYCKNISNIL-------KGSKIFLKREDLNFT--------GAHKM----------- 48
            + +     +   L          ++ LK++             G +++           
Sbjct: 78  ESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEA 137

Query: 49  --------NNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--D 98
                    + +      +F  +  I   +  G  G+S       +  +  +++  +   
Sbjct: 138 GLLTLDDDYSKLLSPEFKQFFSQYSIAVGS-TGNLGLSIGIMSARIGFKVTVHMSADARA 196

Query: 99  YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 158
           +K       K++  G TV   +  +   A+ E  K               A+   P    
Sbjct: 197 WK-----KAKLRSHGVTVVEYE-QDYGVAVEEGRK---------------AAQSDPNCFF 235

Query: 159 VRDF--------QSIIGYEIHQQLNFNFYNKK-----YILACVGGGSNALG 196
           + D          S+ G  +  Q              ++    G G    G
Sbjct: 236 IDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGG 286

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 39/189 (20%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 70
             TP+     ++     +++F K E+    GA K     N+++Q  L +  +K  ++  +
Sbjct: 25  NKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQ--LNEAQRKAGVLTFS 81

Query: 71  GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
            +G H  + A S  +L + + I +  +  + K         K  GG V  + Y     + 
Sbjct: 82  -SGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAA-----TKGYGGQV--IMYDRYKDDR 133

Query: 128 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 182
              A +            I    G     PY  P ++   Q     E+ +++        
Sbjct: 134 EKMAKE------------ISEREGLTIIPPYDHPHVLAG-QGTAAKELFEEVG----PLD 176

Query: 183 YILACVGGG 191
            +  C+GGG
Sbjct: 177 ALFVCLGGG 185

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 39/189 (20%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 253
             TP+     ++     +++F K E+    GA K     N+++Q  L +  +K  ++  +
Sbjct: 25  NKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQ--LNEAQRKAGVLTFS 81

Query: 254 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
            +G H  + A S  +L + + I +  +  + K         K  GG V  + Y     + 
Sbjct: 82  -SGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAA-----TKGYGGQV--IMYDRYKDDR 133

Query: 311 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 365
              A +            I    G     PY  P ++   Q     E+ +++        
Sbjct: 134 EKMAKE------------ISEREGLTIIPPYDHPHVLAG-QGTAAKELFEEVG----PLD 176

Query: 366 YILACVGGG 374
            +  C+GGG
Sbjct: 177 ALFVCLGGG 185

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 36/189 (19%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 70
             TP+     ++ +  G  +F K E    TG+ K+    N++   +     +K + +   
Sbjct: 24  HLTPVLTSSILNQLT-GRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH 82

Query: 71  GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
            +G HG +   +  L  + + I + +   D K+       I+  G ++  V    + +  
Sbjct: 83  SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLA-----IQAYGASI--VYCEPSDESR 135

Query: 128 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 182
            N A +            +   +     HP   P ++   Q  I  E+  Q+        
Sbjct: 136 ENVAKR------------VTEETEGIMVHPNQEPAVIAG-QGTIALEVLNQVP----LVD 178

Query: 183 YILACVGGG 191
            ++  VGGG
Sbjct: 179 ALVVPVGGG 187

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 36/189 (19%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 253
             TP+     ++ +  G  +F K E    TG+ K+    N++   +     +K + +   
Sbjct: 24  HLTPVLTSSILNQLT-GRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH 82

Query: 254 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
            +G HG +   +  L  + + I + +   D K+       I+  G ++  V    + +  
Sbjct: 83  SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLA-----IQAYGASI--VYCEPSDESR 135

Query: 311 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 365
            N A +            +   +     HP   P ++   Q  I  E+  Q+        
Sbjct: 136 ENVAKR------------VTEETEGIMVHPNQEPAVIAG-QGTIALEVLNQVP----LVD 178

Query: 366 YILACVGGG 374
            ++  VGGG
Sbjct: 179 ALVVPVGGG 187

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 53/350 (15%), Positives = 104/350 (29%), Gaps = 105/350 (30%)

Query: 21  CK--------NISNILKGSK---IFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK----- 64
           CK         +++ L  +    I L    +  T           SLL K+L  +     
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK------SLLLKYLDCRPQDLP 319

Query: 65  RIICET--------GAGMHG---------------VSTATSCCLLNLESIIYIGENDYKR 101
           R +  T           +                 ++T     L  LE   Y     + R
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDR 377

Query: 102 QNI---NVK-KIKLLGGTVYLVQYGNLK--EAMNEAIKDWSNNILNSHYLIGTASGPHPY 155
            ++   +      LL      + + ++   + M    K    +++       T S     
Sbjct: 378 LSVFPPSAHIPTILLS-----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----I 428

Query: 156 PTIVRDF--QSIIGYEIHQQLNFNFYN--KKYILACVGGGSNALGRPTPI--YYCKNISN 209
           P+I  +   +    Y +H+ +  + YN  K +        S+ L  P  +  Y+  +I +
Sbjct: 429 PSIYLELKVKLENEYALHRSI-VDHYNIPKTF-------DSDDLI-PPYLDQYFYSHIGH 479

Query: 210 ILKG----------SKIFLKREDLNF-------TGAHKMNNSIAQSLLAKFLKKKRIICE 252
            LK             +FL   D  F              +    + L +    K  IC+
Sbjct: 480 HLKNIEHPERMTLFRMVFL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL--GGTVY 300
                          +L+   +  I EN    +  ++ +I L+     ++
Sbjct: 537 N----DPKYERLVNAILDF--LPKIEENLICSKYTDLLRIALMAEDEAIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	410
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	100.0
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	100.0
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	100.0
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	100.0
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	100.0
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	100.0
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	100.0
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	100.0
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	100.0
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	100.0
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	100.0
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	100.0
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	100.0
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	100.0
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	100.0
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	100.0
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	100.0
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	100.0
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	100.0
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	100.0
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	100.0
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	100.0
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	100.0
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	100.0
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	100.0
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	100.0
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	100.0
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	100.0
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	100.0
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	100.0
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	100.0
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	100.0
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	100.0
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	100.0
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	100.0
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	100.0
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	100.0
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	100.0
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	100.0
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	100.0
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	100.0
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	100.0
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	100.0
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	100.0
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	100.0
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	100.0
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	100.0
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	100.0
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	100.0
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	100.0
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	100.0
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	100.0
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	100.0
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	100.0
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	100.0
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	100.0
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	100.0
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	100.0
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	100.0
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	100.0
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	100.0
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	100.0
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	100.0
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	100.0
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	100.0
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	100.0
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	100.0
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	100.0
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	100.0
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	100.0
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	100.0
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	100.0
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	100.0
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	99.98
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	99.97
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	99.97
1vb3_A	428	Threonine synthase; PLP-dependent enzyme, lyase; H	99.95
1vb3_A	428	Threonine synthase; PLP-dependent enzyme, lyase; H	99.94
4f4f_A	468	Threonine synthase; structural genomics, niaid, na	99.93
1kl7_A	514	Threonine synthase; threonine synthesis, pyridoxal	99.92
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	99.92
1kl7_A	514	Threonine synthase; threonine synthesis, pyridoxal	99.91
4f4f_A	468	Threonine synthase; structural genomics, niaid, na	99.91
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	99.91
1vp8_A	201	Hypothetical protein AF0103; putative pyruvate kin	87.5
1vp8_A	201	Hypothetical protein AF0103; putative pyruvate kin	86.6
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	80.83

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=9.4e-39  Score=321.18  Aligned_cols=207  Identities=49%  Similarity=0.824  Sum_probs=178.3

Q ss_pred             eccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      |.+|||+++++|++.+++.+||+|+|++|||||||+|++.++++.+++.+.+++|+++|+||||+|+|++|+++|++|+|
T Consensus        75 g~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i~~a~~~g~~~vI~~~ssGNhg~avA~aaa~~Gi~~~I  154 (418)
T 1x1q_A           75 GRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGKRRVIAETGAGQHGVSVATVAALFGLECVV  154 (418)
T ss_dssp             CCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHHcCCCEEE
Confidence            46899999999988775689999999999999999999999998888888888888899999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      |||+.+.++++.|+.+++.+||+|+.++.+  +++++.+++.+.+.++..+.+|+++++.|+|||++++.+||+|++.||
T Consensus       155 ~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq~t~~~Ei  234 (418)
T 1x1q_A          155 YMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEV  234 (418)
T ss_dssp             EEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHHHTHHHHHH
T ss_pred             EECCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHH
Confidence            999754444557889999999999999753  499999888776444322467888888888999776667999999999


Q ss_pred             HHhhhhc-CCCCCEEEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCcC
Q psy11239        354 HQQLNFN-FYNKKYILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISKK  402 (410)
Q Consensus       354 ~~q~~~~-~~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~~  402 (410)
                      ++|+.+. +..||+||+|+|+||+++|++.++++   +++|||||||+++.++
T Consensus       235 ~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~  287 (418)
T 1x1q_A          235 KRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLS  287 (418)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSS
T ss_pred             HHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccc
Confidence            9999642 45699999999999999999999964   4899999999998543

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A

Probab=100.00  E-value=7.8e-39  Score=321.67  Aligned_cols=205  Identities=51%  Similarity=0.869  Sum_probs=177.3

Q ss_pred             eccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      |.+|||+++++|++.+++.+||+|+|++|||||||+|++..+++.+++.|.+++|+++|+||||+|+|++|+++|++|+|
T Consensus        79 g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~~~vI~~~ssGNhG~A~A~aaa~~G~~~~I  158 (422)
T 2o2e_A           79 GRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVI  158 (422)
T ss_dssp             SCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEecCccHHHHHHHHHHHHcCCcEEE
Confidence            56899999999998886689999999999999999999999999999889888888899999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      |||+.+.++++.|+.+|+.+||+|+.++.+  +++++.+++.+.+.++..+.+|+++++.|+|||+.++..||+|+|.||
T Consensus       159 ~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei  238 (422)
T 2o2e_A          159 YMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEA  238 (422)
T ss_dssp             EEEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHH
T ss_pred             EeCCCcchhhHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHH
Confidence            999754455568899999999999999754  499999888775444323467888888888999877778999999999


Q ss_pred             HHhhhh-cCCCCCEEEEccCchhHHHHHHHHHhc-CCCeEEEEccCCCC
Q psy11239        354 HQQLNF-NFYNKKYILACVGGGSNALGIFYTFIN-SNFKLVAIESGGIS  400 (410)
Q Consensus       354 ~~q~~~-~~~~~d~iv~~vGtGg~~~Gi~~~~~~-~~~~vigVe~~g~~  400 (410)
                      ++|+.+ .+..||+||+|+|+||+++|++.+++. +.+|||||||.++.
T Consensus       239 ~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~~p~v~vigVe~~g~~  287 (422)
T 2o2e_A          239 RVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAGDG  287 (422)
T ss_dssp             HHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTTCTTCEEEEEEECC--
T ss_pred             HHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhcCCCCeEEEEecCCCc
Confidence            999963 355799999999999999999777754 48999999999974

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=100.00  E-value=2.3e-38  Score=310.47  Aligned_cols=191  Identities=17%  Similarity=0.199  Sum_probs=162.5

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||+++++|++.. +++||+|+|++|||||||+|++.+++..+++.|.    +..|+++|+||||+++|++|+++|++|
T Consensus        35 ~TPLv~~~~Ls~~~-G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~  113 (344)
T 3vc3_A           35 RTPLVYLNKVTEGC-GAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKM  113 (344)
T ss_dssp             CCCEEECCSTTTTC-CSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred             CCceEECcccchhh-CCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcE
Confidence            59999999999888 7899999999999999999999999999988764    345677999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g  350 (410)
                      +||||+..+.   .|+.+++.+||+|+.++... ..++...+.+...+. .+.+|+       +||++  ++..||+|+|
T Consensus       114 ~IvmP~~~~~---~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~np~~~~a~~~t~g  182 (344)
T 3vc3_A          114 VLTMPSYTSL---ERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENT-PNAHML-------QQFSNPANTQVHFETTG  182 (344)
T ss_dssp             EEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHS-TTEECC-------CTTTCHHHHHHHHHTHH
T ss_pred             EEEECCCChH---HHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhc-cCceec-------cccccchhHHHHHHHHH
Confidence            9999986554   78999999999999997544 566666666665555 233433       56532  3788999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcCC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKKR  403 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~~  403 (410)
                      .||++|+.   ..+|+||+|+|+||+++|++.++++  ++++||+|||.+++.+.
T Consensus       183 ~EI~eq~~---~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s~~l~  234 (344)
T 3vc3_A          183 PEIWEDTN---GQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLN  234 (344)
T ss_dssp             HHHHHHTT---TCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGG
T ss_pred             HHHHHHhC---CCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcCCCChhhc
Confidence            99999994   6899999999999999999999985  49999999999987653

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...

Probab=100.00  E-value=2.7e-38  Score=316.15  Aligned_cols=205  Identities=48%  Similarity=0.808  Sum_probs=176.5

Q ss_pred             eccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      |.+|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+++.|.+++|+++|+||||+|+|++|+++|++|+|
T Consensus        53 g~~TPL~~~~~l~~~~-g~~i~lK~E~l~ptGSfK~R~a~~~~~~a~~~g~~~vi~e~ssGNhg~a~A~aa~~~G~~~~i  131 (396)
T 1qop_B           53 GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRI  131 (396)
T ss_dssp             CCSCCEEECHHHHTTS-SEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCcEEhhhhhhcc-CCeEEEEeccCCCCCcHHHHHHHHHHHHHHHcCcCEEEEecCchHHHHHHHHHHHHCCCcEEE
Confidence            4579999999998877 589999999999999999999999999999999888888889999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      |||+.+.++++.|+++|+.+||+|+.++.+  +++++.+++.+.+.++..+.+|+++++.|+|||+.++..||+|+|.||
T Consensus       132 ~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~g~~t~~~Ei  211 (396)
T 1qop_B          132 YMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEET  211 (396)
T ss_dssp             EEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHH
T ss_pred             EEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHHHHhHHHHHH
Confidence            999743444456789999999999999754  489999888876444323457778888888999777777999999999


Q ss_pred             HHhhhh-cCCCCCEEEEccCchhHHHHHHHHHhc-CCCeEEEEccCCCCc
Q psy11239        354 HQQLNF-NFYNKKYILACVGGGSNALGIFYTFIN-SNFKLVAIESGGISK  401 (410)
Q Consensus       354 ~~q~~~-~~~~~d~iv~~vGtGg~~~Gi~~~~~~-~~~~vigVe~~g~~~  401 (410)
                      ++|+.+ .+..||+||+|+|+||+++|++.+++. +++|||||||.++.+
T Consensus       212 ~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~~~~~~~vigVe~~~~~~  261 (396)
T 1qop_B          212 KAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGI  261 (396)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTTCTTSEEEEEEEEETBG
T ss_pred             HHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHhcCCCCEEEEEeCCCccc
Confidence            999952 245799999999999999999988874 489999999999753

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*

Probab=100.00  E-value=4.8e-38  Score=313.71  Aligned_cols=206  Identities=55%  Similarity=0.919  Sum_probs=174.2

Q ss_pred             eccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      |.+|||+++++|++..++.+||+|+|++|||||||+|++.+++..+++.|.+++|+++|+||||+|+|++|+++|++|+|
T Consensus        48 g~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~vv~~~ssGN~g~a~A~aa~~~G~~~~i  127 (388)
T 1v8z_A           48 GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDI  127 (388)
T ss_dssp             CCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHHcCCcEEE
Confidence            45799999999988774589999999999999999999999998888888888888899999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      |||+.+.++.+.|+++++.+||+|+.++.+  +++++..++.+.+.++.++.+|+++++.|++||+.++.+||+|++.||
T Consensus       128 v~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~~~~t~~~Ei  207 (388)
T 1v8z_A          128 YMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREA  207 (388)
T ss_dssp             EEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHH
T ss_pred             EEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCceEecCCccCCCCchhHHHHHhHHHHHHH
Confidence            999743444456789999999999999753  488888888664333312457777888888999766667999999999


Q ss_pred             HHhhhhc-CCCCCEEEEccCchhHHHHHHHHHhc-CCCeEEEEccCCCCc
Q psy11239        354 HQQLNFN-FYNKKYILACVGGGSNALGIFYTFIN-SNFKLVAIESGGISK  401 (410)
Q Consensus       354 ~~q~~~~-~~~~d~iv~~vGtGg~~~Gi~~~~~~-~~~~vigVe~~g~~~  401 (410)
                      ++|+.+. +..||+||+|+|||||++|++.+++. +++|||||||+++.+
T Consensus       208 ~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~~~~~~~vigve~~~~~~  257 (388)
T 1v8z_A          208 KAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGL  257 (388)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTTCTTSEEEEEEEEETBG
T ss_pred             HHHHHHhcCCCCCEEEEecCccHhHHHHHHHHhhCCCceEEEEccCcccc
Confidence            9999632 45699999999999999999988874 489999999998754

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A

Probab=100.00  E-value=6.9e-38  Score=314.75  Aligned_cols=210  Identities=48%  Similarity=0.770  Sum_probs=174.2

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~   81 (410)
                      ++|.+++..+..++|||+++++|++.+|+.+||+|+|++|||||||+|+++.++..+++.+++.+|+++||||||+|+|+
T Consensus        68 ~~~~~~~~~~~g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~~~vI~~~ssGNhG~A~A~  147 (422)
T 2o2e_A           68 DDLDRLQANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGAGQHGVATAT  147 (422)
T ss_dssp             HHHHHHTTTTSSCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEecCccHHHHHHHH
Confidence            34566667777889999999999999877899999999999999999999888888888888788887899999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV  159 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  159 (410)
                      +|+++|++|+||||+.+.+++..|+.+|+.|||+|+.++.+  ++++++.++.+.+.++..+.+|++++..++|||+..+
T Consensus       148 aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v  227 (422)
T 2o2e_A          148 ACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMV  227 (422)
T ss_dssp             HHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHH
T ss_pred             HHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHH
Confidence            99999999999999965444457889999999999999853  6999999887765544335678888877889996544


Q ss_pred             cccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        160 RDFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       160 ~~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ..||+|++.||++|+.. .+..||+||+|+|+||+++|+..++..       .+.++|+.
T Consensus       228 ~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~-------~p~v~vig  280 (422)
T 2o2e_A          228 RDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD-------DPGVRLVG  280 (422)
T ss_dssp             HHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT-------CTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc-------CCCCeEEE
Confidence            56999999999999642 244689999999999999999777743       13567764

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=100.00  E-value=7.7e-38  Score=306.69  Aligned_cols=186  Identities=16%  Similarity=0.144  Sum_probs=151.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC----CceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~----~~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ++++|||+++++|++.+ +++||+|+|++|||||||||++...+..+.+.+.    +..|+++||||||+|+|++|+++|
T Consensus        32 lIG~TPLv~~~~Ls~~~-G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G  110 (344)
T 3vc3_A           32 LIGRTPLVYLNKVTEGC-GAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKG  110 (344)
T ss_dssp             GSCCCCEEECCSTTTTC-CSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             hcCCCceEECcccchhh-CCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence            46789999999999998 6899999999999999999998887777777653    346667899999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-HHHHHHHHHHHHhhcccCCcccccccccCcccccc--ccccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~g~~  164 (410)
                      ++|+||||+.++   +.|+.+|+.|||+|+.++... ..++...+.+.+.+.. +       ..+.+||+||  ...||+
T Consensus       111 ~~~~IvmP~~~~---~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~np~~~~a~~~  179 (344)
T 3vc3_A          111 YKMVLTMPSYTS---LERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTP-N-------AHMLQQFSNPANTQVHFE  179 (344)
T ss_dssp             CEEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHST-T-------EECCCTTTCHHHHHHHHH
T ss_pred             CcEEEEECCCCh---HHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhcc-C-------ceeccccccchhHHHHHH
Confidence            999999999988   589999999999999997432 4555555555555442 1       1346788776  368899


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++.||++|+.   ..||+||+|+|+||+++|+...+.      ...+.++++.
T Consensus       180 t~g~EI~eq~~---~~~d~vv~~vGgGG~~~Gi~~~~k------~~~p~v~vig  224 (344)
T 3vc3_A          180 TTGPEIWEDTN---GQVDIFVMGIGSGGTVSGVGQYLK------SKNPNVKIYG  224 (344)
T ss_dssp             THHHHHHHHTT---TCCCEEEEECSSSHHHHHHHHHHH------HHCTTCEEEE
T ss_pred             HHHHHHHHHhC---CCceEEEEecCCccchHHHhhhhH------hhCCCceEEE
Confidence            99999999964   369999999999999999965553      3345677774

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=100.00  E-value=8.2e-37  Score=298.44  Aligned_cols=190  Identities=25%  Similarity=0.211  Sum_probs=163.5

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||++++++ ... +.+||+|+|++||+||||+|++.+++..+.+.|.    +.+|+++|+||||+++|++|+.+|++|
T Consensus        21 ~TPL~~l~~l-~~~-g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~   98 (334)
T 3tbh_A           21 QTPALYLNKL-NNT-KAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKV   98 (334)
T ss_dssp             CCCEEECCTT-CCS-SSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCeEECCcc-cCC-CCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCE
Confidence            7999999998 665 6899999999999999999999999999988876    554466999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCCh--hHHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP--TIVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~t~g  350 (410)
                      +||||+..+.   .|+++++.+||+|+.++... ++++.+.+.+.+++. ++.+|+       +||+  .++..||.|++
T Consensus        99 ~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~-~~~~~i-------~~~~np~n~~~g~~t~~  167 (334)
T 3tbh_A           99 IITMPESMSL---ERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAAN-PNAVLA-------DQFATKYNALIHEETTG  167 (334)
T ss_dssp             EEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC-TTEEEC-------CTTTCHHHHHHHHHTHH
T ss_pred             EEEECCCCCH---HHHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhC-CCEEEC-------CccCChhHHHHHHHHHH
Confidence            9999986543   78999999999999997543 889999998887775 234444       5553  33678999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR  403 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~  403 (410)
                      .||++|+.   ..||+||+|+|+|||++|++.++++.  ++|||||||++++.+.
T Consensus       168 ~Ei~~q~~---~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~  219 (334)
T 3tbh_A          168 PEIWEQTN---HNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLS  219 (334)
T ss_dssp             HHHHHHTT---SCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEETTSCTTT
T ss_pred             HHHHHHhC---CCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeCCchHhh
Confidence            99999995   47999999999999999999999864  8999999999997653

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=7.4e-38  Score=314.64  Aligned_cols=210  Identities=47%  Similarity=0.769  Sum_probs=170.6

Q ss_pred             hhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHH
Q psy11239          4 FDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSC   83 (410)
Q Consensus         4 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a   83 (410)
                      |.+++..+..++|||+++++|++.+|+.+||+|+|++|||||||+|+++.++..+++.+++.+|+++||||||+|+|++|
T Consensus        66 ~~~~~~~~ig~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i~~a~~~g~~~vI~~~ssGNhg~avA~aa  145 (418)
T 1x1q_A           66 LDHYLRQFAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGKRRVIAETGAGQHGVSVATVA  145 (418)
T ss_dssp             HHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHH
T ss_pred             HHHhhhcccCCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHH
Confidence            44444556678999999999999886789999999999999999999988877788788778888789999999999999


Q ss_pred             HHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC--CCHHHHHHHHHHHHhhcccCCcccccccccCccccccccc
Q psy11239         84 CLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY--GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRD  161 (410)
Q Consensus        84 ~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  161 (410)
                      +.+|++|+||||+.+.+++..|+.+|+.|||+|+.++.  +++++++.++.+.+.+...+.+|++++..++|||...+.+
T Consensus       146 a~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~  225 (418)
T 1x1q_A          146 ALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRD  225 (418)
T ss_dssp             HHHTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHH
T ss_pred             HHcCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHH
Confidence            99999999999986443334788999999999999985  3699999888776554423457878887788999543346


Q ss_pred             cchhHHHHHHHhhhhc-CCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        162 FQSIIGYEIHQQLNFN-FYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~-~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ||+|++.||++|+... +..||+||+|+|+||+++|+..++..+.     .+.++|+.
T Consensus       226 gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~-----~p~~~vig  278 (418)
T 1x1q_A          226 FQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLP-----EGRPKLIG  278 (418)
T ss_dssp             HHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSC-----TTCCEEEE
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhC-----CCCCeEEE
Confidence            9999999999997432 3458999999999999999987774321     13567774

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=100.00  E-value=2.5e-36  Score=294.07  Aligned_cols=190  Identities=21%  Similarity=0.133  Sum_probs=162.8

Q ss_pred             cccccccccccccc------cCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHH
Q psy11239        198 PTPIYYCKNISNIL------KGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCL  268 (410)
Q Consensus       198 ~tpl~~~~~L~~~~------~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~  268 (410)
                      .|||+++++|++.+      .+.+||+|+|++|||||||+|++.+++..+.+.|.   +..|+++|+||||+++|++|++
T Consensus        15 ~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN~g~alA~aa~~   94 (325)
T 3dwg_A           15 NTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARL   94 (325)
T ss_dssp             CCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred             CCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence            79999999998772      37899999999999999999999999999988876   2345569999999999999999


Q ss_pred             cCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH--HHhh
Q psy11239        269 LNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDF  345 (410)
Q Consensus       269 ~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g  345 (410)
                      +|++|+||||+..+.   .|+++++.+||+|+.++.. +++++.+.+.+++++.+ +.+|+       +||++.  +..|
T Consensus        95 ~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~-~~~~~-------~~~~np~~~~~g  163 (325)
T 3dwg_A           95 KGYRLICVMPENTSV---ERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNP-SWVML-------YQYGNPANTDSH  163 (325)
T ss_dssp             HTCEEEEEEESSSCH---HHHHHHHHHTCEEEEECSTTTHHHHHHHHHHHHHHCT-TSBCC-------CTTTCHHHHHHH
T ss_pred             cCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC-CeEeC-------CCCCCHHHHHHH
Confidence            999999999986543   7899999999999999753 38999999988887762 24444       566333  4579


Q ss_pred             hhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        346 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       346 ~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      |.|++.||++|++    .||+||+|+|||||++|++.++++  +++|||||||++++.+
T Consensus       164 ~~t~~~Ei~~q~~----~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~  218 (325)
T 3dwg_A          164 YCGTGPELLADLP----EITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGV  218 (325)
T ss_dssp             HHTHHHHHHHHCT----TCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHhcC----CCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeCCCcch
Confidence            9999999999996    399999999999999999999985  4899999999998765

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=100.00  E-value=7.2e-36  Score=288.24  Aligned_cols=190  Identities=17%  Similarity=0.175  Sum_probs=161.9

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.+.   +..|+++|+||||+|+|++|+++|++|+
T Consensus        10 ~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~   88 (303)
T 2v03_A           10 NTPLVKLQRMGPDN-GSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMK   88 (303)
T ss_dssp             CCCEEECSSSSCSS-SCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCcEECccccccc-CCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEE
Confidence            79999999998777 5899999999999999999999999998887775   2455669999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIGY  351 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~  351 (410)
                      ||||++.++   .++++++.+||+|+.++.. +++++.+.+.+++++.. +. |+       +||++  ++..||.|++.
T Consensus        89 iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~-~~-~~-------~~~~n~~~~~~g~~t~~~  156 (303)
T 2v03_A           89 LLMPDNMSQ---ERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGE-GK-LL-------DQFNNPDNPYAHYTTTGP  156 (303)
T ss_dssp             EEEETTSCH---HHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTS-CE-EC-------CTTTCTHHHHHHHHTHHH
T ss_pred             EEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCC-Cc-cc-------CCcCChhhHHHhcCCcHH
Confidence            999986443   7899999999999999753 38999888888887741 33 44       44422  25569999999


Q ss_pred             HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239        352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR  403 (410)
Q Consensus       352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~  403 (410)
                      ||++|++   ..||+||+|+|+||+++|++.++++.  ++|||+|||++++.+.
T Consensus       157 Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~  207 (303)
T 2v03_A          157 EIWQQTG---GRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIP  207 (303)
T ss_dssp             HHHHHTT---TCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCT
T ss_pred             HHHHHhC---CCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCCCcccc
Confidence            9999995   36999999999999999999999864  8999999999997654

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-36  Score=303.28  Aligned_cols=190  Identities=16%  Similarity=0.139  Sum_probs=164.2

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||++++++.+.. +.+||+|+|++||+||||+|++.+++..+++.|.    ..+|+++|+||||+++|++|+++|++|
T Consensus       123 ~TPLv~l~~Ls~~~-g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~  201 (430)
T 4aec_A          123 KTPMVYLNSIAKGC-VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRL  201 (430)
T ss_dssp             CCCEEECCGGGTTC-SSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCeEEChhhhhhc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEE
Confidence            79999999998877 6899999999999999999999999999988876    144566999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g  350 (410)
                      +||||+..+.   .|+.+++.+||+|+.++.+. ++++.+.+.+..++.  +..|++      +||++  +...||.|++
T Consensus       202 ~IvmP~~~s~---~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~--~~~~~i------~~~~np~~~~aG~~T~a  270 (430)
T 4aec_A          202 ILTMPASMSM---ERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNT--PDAYML------QQFDNPANPKIHYETTG  270 (430)
T ss_dssp             EEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHS--TTEEEC------CTTTCTHHHHHHHHTHH
T ss_pred             EEEEcCCCCH---HHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhc--CCcEEe------cCCCCccHHHHHHHHHH
Confidence            9999986543   78999999999999997544 899999998888775  234444      55533  2468999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      .||++|+.   ..||+||+|+|+|||++|++.++++  +++|||||||++++.+
T Consensus       271 ~EI~eQl~---~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~~s~~l  321 (430)
T 4aec_A          271 PEIWDDTK---GKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDIL  321 (430)
T ss_dssp             HHHHHHTT---SCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCGG
T ss_pred             HHHHHHcC---CCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeCCCcHh
Confidence            99999995   4799999999999999999999985  4899999999998755

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...

Probab=100.00  E-value=4.6e-37  Score=307.18  Aligned_cols=207  Identities=44%  Similarity=0.706  Sum_probs=167.2

Q ss_pred             hhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHH
Q psy11239          4 FDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSC   83 (410)
Q Consensus         4 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a   83 (410)
                      +.+++..+..++|||+++++|++.+ +.+||+|+|++|||||||||+++.++..+++.+.+++|+++||||||+|+|++|
T Consensus        44 ~~~~~~~~ig~~TPL~~~~~l~~~~-g~~i~lK~E~l~ptGSfK~R~a~~~~~~a~~~g~~~vi~e~ssGNhg~a~A~aa  122 (396)
T 1qop_B           44 FADLLKNYAGRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALAS  122 (396)
T ss_dssp             HHHHHHHTTCCSCCEEECHHHHTTS-SEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEEhhhhhhcc-CCeEEEEeccCCCCCcHHHHHHHHHHHHHHHcCcCEEEEecCchHHHHHHHHHH
Confidence            3344445666789999999999887 589999999999999999999888877888888888888779999999999999


Q ss_pred             HHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccccc
Q psy11239         84 CLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRD  161 (410)
Q Consensus        84 ~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  161 (410)
                      +++|++|+||||+.+.++.+.|..+|+.|||+|+.++.+  ++++++.++.+.+.+...+.+|++++..++|||...+..
T Consensus       123 ~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~  202 (396)
T 1qop_B          123 ALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVRE  202 (396)
T ss_dssp             HHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHH
T ss_pred             HHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHH
Confidence            999999999999963323335789999999999999853  689999988876554433456777777788999433356


Q ss_pred             cchhHHHHHHHhhhhc-CCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        162 FQSIIGYEIHQQLNFN-FYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~-~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ||+|++.||++|+... +..||+||+|+|+||+++|+..++..       .+.++|+.
T Consensus       203 g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~~-------~~~~~vig  253 (396)
T 1qop_B          203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIN-------DTSVGLIG  253 (396)
T ss_dssp             TTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-------CTTSEEEE
T ss_pred             HHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHhc-------CCCCEEEE
Confidence            9999999999997321 34689999999999999999777652       23567774

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*

Probab=100.00  E-value=4.6e-37  Score=306.56  Aligned_cols=208  Identities=50%  Similarity=0.816  Sum_probs=164.8

Q ss_pred             hhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHH
Q psy11239          4 FDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSC   83 (410)
Q Consensus         4 ~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a   83 (410)
                      |.+++.....++|||+++++|++.+|+.+||+|+|++|||||||||.+..++..+++.+.+.+|+++||||||+|+|++|
T Consensus        39 ~~~~~~~~ig~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~vv~~~ssGN~g~a~A~aa  118 (388)
T 1v8z_A           39 LNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAG  118 (388)
T ss_dssp             HHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHH
Confidence            33344445667899999999998885589999999999999999999887777777777777887779999999999999


Q ss_pred             HHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccccc
Q psy11239         84 CLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRD  161 (410)
Q Consensus        84 ~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  161 (410)
                      +++|++|+||||+.+.++.+.|+.+|+.|||+|+.++.+  ++++++.++.+.+.+...+.+|++++..+.+||......
T Consensus       119 ~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~  198 (388)
T 1v8z_A          119 ALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRD  198 (388)
T ss_dssp             HHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHH
T ss_pred             HHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCceEecCCccCCCCchhHHHH
Confidence            999999999999863333346789999999999999843  689998888765333322456777777778888432345


Q ss_pred             cchhHHHHHHHhhhhc-CCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        162 FQSIIGYEIHQQLNFN-FYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~-~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ||+|++.||++|+... +..||+||+|+|+||+++|+...+..       .+.++|+.
T Consensus       199 ~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~~-------~~~~~vig  249 (388)
T 1v8z_A          199 FQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-------DKKVKLVG  249 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-------CTTSEEEE
T ss_pred             HhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHhh-------CCCceEEE
Confidence            9999999999997422 34589999999999999999776642       23567774

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=100.00  E-value=1.7e-36  Score=297.66  Aligned_cols=184  Identities=20%  Similarity=0.231  Sum_probs=160.0

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHc----CCCceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL----KKKRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~----g~~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.    +.++ |+++|+||||+++|++|+++|++|
T Consensus        25 ~TPL~~~~~l~~~~-g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~-vv~~SsGNhg~a~A~aa~~~G~~~  102 (346)
T 3l6b_A           25 LTPVLTSSILNQLT-GRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKA-VVTHSSGNHGQALTYAAKLEGIPA  102 (346)
T ss_dssp             CCCEECCHHHHHHH-TSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCCSC-EEEECSSHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEchhhHHHh-CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCCCE-EEEeCCCHHHHHHHHHHHHhCCCE
Confidence            89999999998877 68999999999999999999999999888764    4455 455999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  352 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~E  352 (410)
                      +||||+..+.   .|+++++.+||+|+.++ ++++++.+.+.++.++.  +.+|+       +||++. +..||+|++.|
T Consensus       103 ~iv~p~~~~~---~k~~~~~~~GA~V~~v~-~~~~~~~~~a~~l~~~~--~~~~i-------~~~~np~~~~g~~t~~~E  169 (346)
T 3l6b_A          103 YIVVPQTAPD---CKKLAIQAYGASIVYCE-PSDESRENVAKRVTEET--EGIMV-------HPNQEPAVIAGQGTIALE  169 (346)
T ss_dssp             EEEEETTSCH---HHHHHHHHTTCEEEEEC-SSHHHHHHHHHHHHHHH--TCEEC-------CSSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEE-------CCCCChHHHHHHHHHHHH
Confidence            9999986543   78999999999999995 45889988888887776  45666       565433 68899999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCC
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGIS  400 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~  400 (410)
                      |++|++    .+|+||+|+|||||++|++.++++  +++|||||||++++
T Consensus       170 i~~q~~----~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~  215 (346)
T 3l6b_A          170 VLNQVP----LVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNAD  215 (346)
T ss_dssp             HHHHST----TCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGC
T ss_pred             HHHhCC----CCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCCH
Confidence            999994    799999999999999999999985  48999999999875

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=100.00  E-value=7.3e-36  Score=290.63  Aligned_cols=190  Identities=16%  Similarity=0.126  Sum_probs=161.7

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCC----ceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK----RIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~----~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.|.-    ..|+++|+||||+++|++|+++|++|
T Consensus        15 ~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~   93 (322)
T 1z7w_A           15 NTPLVYLNNVAEGC-VGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKL   93 (322)
T ss_dssp             CCCEEECCGGGTTC-SSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCeEECccccccC-CceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCE
Confidence            79999999998776 68999999999999999999999999988888861    35566999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g  350 (410)
                      +||||+..+   +.|+++++.+||+|+.++... ++++.+.+.+++++. + ..|++      +||++  +...||.|++
T Consensus        94 ~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~-~-~~~~i------~~~~n~~~~~~g~~t~~  162 (322)
T 1z7w_A           94 IITMPASMS---TERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKT-P-NGYML------QQFENPANPKIHYETTG  162 (322)
T ss_dssp             EEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC-T-TEEEC------CTTTCTHHHHHHHHTHH
T ss_pred             EEEeCCCCC---HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhC-C-CeEeC------CCCCChhHHHHHHHHHH
Confidence            999998644   478999999999999986433 788888888887765 2 34444      55532  2456999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      .||++|+.   ..||+||+|+|+||+++|++.++++  +++|||+|||++++.+
T Consensus       163 ~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~  213 (322)
T 1z7w_A          163 PEIWKGTG---GKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAIL  213 (322)
T ss_dssp             HHHHHHTT---TCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGG
T ss_pred             HHHHHHhc---CCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecCCCccc
Confidence            99999995   4799999999999999999999985  4899999999998654

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=100.00  E-value=7.2e-36  Score=294.99  Aligned_cols=189  Identities=21%  Similarity=0.260  Sum_probs=164.6

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      ..|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.|.+++|+ +|+||||+++|++|+++|++|+||
T Consensus        45 ~~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv  122 (364)
T 4h27_A           45 VKTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC-SSSGNAGMAAAYAARQLGVPATIV  122 (364)
T ss_dssp             CCCCEEEEHHHHHHH-TSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEE-CCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CcCCeEEChhhHHHh-CCEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcCCCEEEE-eCCChHHHHHHHHHHHhCCceEEE
Confidence            489999999998877 689999999999999999999999999888888877665 999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+.   .++++++.+||+|+.++ ++++++.+.+.++.++. ++.+|+       +||++. ...|+.|++.||++
T Consensus       123 ~p~~~~~---~k~~~~~~~GA~Vv~v~-~~~~~a~~~a~~l~~~~-~~~~~~-------~~~~np~~~~G~~t~~~Ei~~  190 (364)
T 4h27_A          123 VPGTTPA---LTIERLKNEGATVKVVG-ELLDEAFELAKALAKNN-PGWVYI-------PPFDDPLIWEGHASIVKELKE  190 (364)
T ss_dssp             EETTSCH---HHHHHHHTTTCEEEEEC-SSTTHHHHHHHHHHHHS-TTEEEE-------CSSCSHHHHHHHTHHHHHHHH
T ss_pred             ECCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhC-CCeEEe-------CCCCCHHHHHHHHHHHHHHHH
Confidence            9986543   78999999999999996 45889999888887775 235665       666433 67899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCcC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISKK  402 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~~  402 (410)
                      |++   ..||+||+|+|+|||++|++.++++   ++++||+|||++++.+
T Consensus       191 q~~---~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~~  237 (364)
T 4h27_A          191 TLW---EKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSF  237 (364)
T ss_dssp             HCS---SCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHH
T ss_pred             HhC---CCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCChHH
Confidence            995   3699999999999999999999985   3689999999998754

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.1e-36  Score=290.24  Aligned_cols=188  Identities=18%  Similarity=0.211  Sum_probs=162.2

Q ss_pred             ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      ..|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.+.+++| ++|+||||+|+|++|+++|++|+||
T Consensus         6 ~~TPL~~~~~l~~~~-g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~vv-~~ssGN~g~alA~~a~~~G~~~~i~   83 (318)
T 2rkb_A            6 VVTPLLESWALSQVA-GMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLV-CSSGGNAGIAAAYAARKLGIPATIV   83 (318)
T ss_dssp             CCCCEEEEHHHHHHH-TSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCEEE-ECCCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             ccCCceehHhhHHHh-CCeEEEEecCCCCCCCHHHHHHHHHHHHHHHcCCCEEE-EECCchHHHHHHHHHHHcCCCEEEE
Confidence            379999999888777 68999999999999999999999999988888866665 4999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+   ..++++|+.+||+|+.++ ++++++.+.+.+..++.  +.+|+       +||++. ...|+.|++.||++
T Consensus        84 ~p~~~~---~~k~~~~~~~Ga~V~~~~-~~~~~~~~~a~~~~~~~--~~~~~-------~~~~n~~~~~g~~t~~~Ei~~  150 (318)
T 2rkb_A           84 LPESTS---LQVVQRLQGEGAEVQLTG-KVWDEANLRAQELAKRD--GWENV-------PPFDHPLIWKGHASLVQELKA  150 (318)
T ss_dssp             ECTTCC---HHHHHHHHHTTCEEEECC-SSHHHHHHHHHHHHHST--TEEEC-------CSSCSHHHHHHHHHHHHHHHH
T ss_pred             ECCCCc---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEe-------CCCCChhhccchhHHHHHHHH
Confidence            998654   378999999999999985 45999988888887764  45555       566333 67889999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCcC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISKK  402 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~~  402 (410)
                      |++   ..||+||+|+|+|||++|++.++++   +++|||+|||++++.+
T Consensus       151 q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~  197 (318)
T 2rkb_A          151 VLR---TPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCF  197 (318)
T ss_dssp             HSS---SCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEETTBCHH
T ss_pred             hcC---CCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEecCCChHH
Confidence            995   4699999999999999999999985   4689999999998643

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=100.00  E-value=1.6e-35  Score=285.91  Aligned_cols=189  Identities=17%  Similarity=0.146  Sum_probs=160.3

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---Cc--eEEecCchHHHHHHHHHHHHcCCc
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KR--IICETGAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~--~v~~~ssGN~g~a~A~~a~~~G~~  272 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.+.   +.  .|+++|+||||+|+|++|+++|++
T Consensus         9 ~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~   87 (304)
T 1ve1_A            9 KTPVVRLAKVVEPD-MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYR   87 (304)
T ss_dssp             CCCEEECCSSSCTT-SCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCE
T ss_pred             CCCcEECccccccc-CCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCc
Confidence            79999999998777 6899999999999999999999999998887775   13  556699999999999999999999


Q ss_pred             EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH--HHhhhhhH
Q psy11239        273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDFQSII  349 (410)
Q Consensus       273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~t~  349 (410)
                      |+||||++.+   ..|+++++.+||+|+.++... ++++.+.+.++.++.  +.+|+       +||.+.  +..||.|+
T Consensus        88 ~~i~~p~~~~---~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~~--~~~~~-------~~~~n~~~~~g~~~t~  155 (304)
T 1ve1_A           88 LILTMPAQMS---EERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL--GAFMP-------DQFKNPANVRAHYETT  155 (304)
T ss_dssp             EEEEEETTCC---HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH--TCBCC-------CTTTCHHHHHHHHHTH
T ss_pred             EEEEeCCCCC---HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhcC--CCEeC-------CCCCChhHHHHHHHHH
Confidence            9999998644   478999999999999997543 888888888877664  34443       455322  44457999


Q ss_pred             HHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        350 GYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       350 g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +.||++|++   ..+|+||+|+|+||+++|++.++++.  ++|||+|||++++..
T Consensus       156 ~~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~  207 (304)
T 1ve1_A          156 GPELYEALE---GRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVL  207 (304)
T ss_dssp             HHHHHHHTT---TCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTT
T ss_pred             HHHHHHHcC---CCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecCCCccc
Confidence            999999995   36999999999999999999999864  899999999998654

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=100.00  E-value=4.3e-36  Score=292.36  Aligned_cols=192  Identities=19%  Similarity=0.128  Sum_probs=156.9

Q ss_pred             hhhhhcCCCCCCCcCcccccccccc------CCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccH
Q psy11239          4 FDLFYNPKKGRPTPIYYCKNISNIL------KGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGM   74 (410)
Q Consensus         4 ~~~~~~~~~~~~TPl~~~~~l~~~~------~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN   74 (410)
                      ++.|..  ..++|||+++++|++.+      .+.+||+|+|++|||||||||++...+..+.+.+.   +.+|+++||||
T Consensus         6 ~~~i~~--~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN   83 (325)
T 3dwg_A            6 YDSLLQ--ALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGN   83 (325)
T ss_dssp             ESSTGG--GCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSH
T ss_pred             ccCHHH--hcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcH
Confidence            344444  56799999999998873      37899999999999999999998877777777664   34666679999


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCc
Q psy11239         75 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPH  153 (410)
Q Consensus        75 ~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (410)
                      ||+|+|++|+.+|++|+||||+.++   +.|+++|+.|||+|+.++.. +++++++.+.+++++.+ + +      .+.+
T Consensus        84 ~g~alA~aa~~~G~~~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~-~-~------~~~~  152 (325)
T 3dwg_A           84 TGISLAMAARLKGYRLICVMPENTS---VERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNP-S-W------VMLY  152 (325)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEESSSC---HHHHHHHHHHTCEEEEECSTTTHHHHHHHHHHHHHHCT-T-S------BCCC
T ss_pred             HHHHHHHHHHHcCCcEEEEECCCCC---HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC-C-e------EeCC
Confidence            9999999999999999999999987   58999999999999999843 58999999988877652 1 2      3467


Q ss_pred             cccccc-c-ccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        154 PYPTIV-R-DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       154 p~~~~~-~-~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ||+||. + .||.|+++||++|++    .||+||+|+|+||+++|+...+...      .+.++|+.
T Consensus       153 ~~~np~~~~~g~~t~~~Ei~~q~~----~~d~vv~pvG~GG~~aGi~~~~k~~------~p~~~vig  209 (325)
T 3dwg_A          153 QYGNPANTDSHYCGTGPELLADLP----EITHFVAGLGTTGTLMGTGRFLREH------VANVKIVA  209 (325)
T ss_dssp             TTTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEECSSSHHHHHHHHHHHHH------STTCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcC----CCCEEEEecCchHHHHHHHHHHHHh------CCCCEEEE
Confidence            888774 4 699999999999964    2999999999999999997666432      23567764

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=100.00  E-value=1.8e-36  Score=297.50  Aligned_cols=183  Identities=17%  Similarity=0.200  Sum_probs=151.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHh---cCCceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL---KKKRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~---~~~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||++...+..+.+.   .....|+++|+||||+|+|++|+++|+
T Consensus        22 ~i~~TPL~~~~~l~~~~-g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~SsGNhg~a~A~aa~~~G~  100 (346)
T 3l6b_A           22 SIHLTPVLTSSILNQLT-GRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGI  100 (346)
T ss_dssp             GSCCCCEECCHHHHHHH-TSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCCSCEEEECSSHHHHHHHHHHHHTTC
T ss_pred             ccCCCCeEEchhhHHHh-CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCCCEEEEeCCCHHHHHHHHHHHHhCC
Confidence            56799999999999887 68999999999999999999887766555443   123346667999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHH
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIG  167 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~  167 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.  +..       +.+||+|| .+.||+|++
T Consensus       101 ~~~iv~p~~~~---~~k~~~~~~~GA~V~~v~-~~~~~~~~~a~~l~~~~--~~~-------~i~~~~np~~~~g~~t~~  167 (346)
T 3l6b_A          101 PAYIVVPQTAP---DCKKLAIQAYGASIVYCE-PSDESRENVAKRVTEET--EGI-------MVHPNQEPAVIAGQGTIA  167 (346)
T ss_dssp             CEEEEEETTSC---HHHHHHHHHTTCEEEEEC-SSHHHHHHHHHHHHHHH--TCE-------ECCSSSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCE-------EECCCCChHHHHHHHHHH
Confidence            99999999987   489999999999999998 67899999888887765  222       35677776 479999999


Q ss_pred             HHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      .||++|++    .||+||+|+|+||+++|+...|...      .+.++|+.
T Consensus       168 ~Ei~~q~~----~~d~vvv~vG~GG~~aGi~~~~k~~------~p~~~vig  208 (346)
T 3l6b_A          168 LEVLNQVP----LVDALVVPVGGGGMLAGIAITVKAL------KPSVKVYA  208 (346)
T ss_dssp             HHHHHHST----TCCEEEEECSSSHHHHHHHHHHHHH------CTTSEEEE
T ss_pred             HHHHHhCC----CCCEEEEecCccHHHHHHHHHHHHh------CCCCEEEE
Confidence            99999963    5899999999999999997766432      23567774

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=100.00  E-value=2.5e-35  Score=285.72  Aligned_cols=192  Identities=16%  Similarity=0.164  Sum_probs=161.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.|.   +..|+++|+||||+|+|++|+++|++|+
T Consensus        16 ~TPL~~~~~l~~~~-g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~a~~~G~~~~   94 (313)
T 2q3b_A           16 RTPLVRLRRVTDGA-VADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVCAARGYRCV   94 (313)
T ss_dssp             CCCEEECSSSCTTC-CSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCceEECccccccc-CcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCcEE
Confidence            69999999988776 6899999999999999999999999998887775   2345669999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      ||||+..+.   .++++++.+||+|+.++.. +++++.+.+.+++++.  +..|++.++.  |  +.++..||.|++.||
T Consensus        95 iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~--~~~~~~~~~~--n--~~~~~~~~~t~~~Ei  165 (313)
T 2q3b_A           95 LTMPETMSL---ERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTD--QRYFVPQQFE--N--PANPAIHRVTTAEEV  165 (313)
T ss_dssp             EEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC--TTEECCCTTT--C--THHHHHHHHTHHHHH
T ss_pred             EEECCCCCH---HHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhC--CCEEeCCCCC--C--hhhHHHHHHHHHHHH
Confidence            999986443   7899999999999999753 3888988888888776  3334443332  2  222556799999999


Q ss_pred             HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      ++|++   ..||+||+|+|+||+++|++.++++  +++|||+|||++++..
T Consensus       166 ~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~  213 (313)
T 2q3b_A          166 WRDTD---GKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVL  213 (313)
T ss_dssp             HHHTT---TCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTSCTT
T ss_pred             HHHcC---CCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCCCccc
Confidence            99995   3699999999999999999999985  4899999999998765

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.2e-35  Score=287.28  Aligned_cols=191  Identities=17%  Similarity=0.150  Sum_probs=151.5

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.|.   +..|+++|+||||+|+|++|+.+|++|+
T Consensus        14 ~TPL~~l~~l~~~~-g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~a~A~~a~~~G~~~~   92 (308)
T 2egu_A           14 DTPAVKLNRIVDED-SADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAV   92 (308)
T ss_dssp             CCCEEECCSSSCTT-SCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCeEECCcccccC-CCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEE
Confidence            79999999998777 6899999999999999999999999998887775   1345569999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      ||||+..+   ..|+++++.+||+|+.++... ++++.+.+.+++++.  +. |++.++.  ||+  ++..||.|++.||
T Consensus        93 iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~--~~-~~~~~~~--n~~--~~~~g~~t~~~Ei  162 (308)
T 2egu_A           93 LVMPDTMS---LERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREH--GY-FMPQQFK--NEA--NPEIHRLTTGKEI  162 (308)
T ss_dssp             EEEESCSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH--CC-BCC------------------CHHHHH
T ss_pred             EEECCCCC---HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHC--cC-CcCCcCC--Chh--HHHHHHHHHHHHH
Confidence            99998654   378999999999999997543 888888888887776  23 4443332  221  2457999999999


Q ss_pred             HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      ++|++   ..||+||+|+|+||+++|++.++++  +++|||+|||++++..
T Consensus       163 ~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~~~~~  210 (308)
T 2egu_A          163 VEQMG---DQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVL  210 (308)
T ss_dssp             HHHHT---TCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC----
T ss_pred             HHHcC---CCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCCCccc
Confidence            99995   3699999999999999999999985  4899999999999654

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=100.00  E-value=2.4e-35  Score=286.29  Aligned_cols=191  Identities=17%  Similarity=0.122  Sum_probs=160.0

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++| + . +.+||+|+|++|||||||+|++.+++..+.+.|.   +..|+++|+||||+|+|++|+++|++|+
T Consensus        13 ~TPL~~l~~l-~-~-g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~   89 (316)
T 1y7l_A           13 NTPLVRLKHF-G-H-NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKIT   89 (316)
T ss_dssp             CCCEEECSSS-S-S-TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEE
T ss_pred             CCCcEECccC-C-C-CCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEE
Confidence            7999999998 6 5 6899999999999999999999999998888776   1456669999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI  353 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei  353 (410)
                      ||||+..+   ..|+++++.+||+|+.++... ++++.+.+.+++++.+ +.+|+++++.  ||  .++..||.|++.||
T Consensus        90 iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~--n~--~~~~~g~~t~~~Ei  161 (316)
T 1y7l_A           90 LTMPETMS---LERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDP-SRYVMLKQFE--NP--ANPQIHRETTGPEI  161 (316)
T ss_dssp             EEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCT-TTEECCCTTT--CT--HHHHHHHHTHHHHH
T ss_pred             EEECCCCC---HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCC-CCEEECCCCC--CH--HHHHHHHHHHHHHH
Confidence            99998644   378999999999999997432 8889988888887752 2325543332  22  23566899999999


Q ss_pred             HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCcC
Q psy11239        354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISKK  402 (410)
Q Consensus       354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~~  402 (410)
                      ++|++   ..||+||+|+|+||+++|++.++++   +++|||+|||++++..
T Consensus       162 ~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~  210 (316)
T 1y7l_A          162 WKDTD---GKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVI  210 (316)
T ss_dssp             HHHTT---TCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHH
T ss_pred             HHHcC---CCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCCCccc
Confidence            99995   3599999999999999999999985   5789999999998643

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=100.00  E-value=6.2e-36  Score=292.24  Aligned_cols=185  Identities=25%  Similarity=0.189  Sum_probs=152.3

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC----CceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~----~~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ..++|||+++++| +.+ +.+||+|+|++|||||||||++...+..+.+.+.    ..+|+++||||||+|+|++|+.+|
T Consensus        18 ~ig~TPL~~l~~l-~~~-g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G   95 (334)
T 3tbh_A           18 LIGQTPALYLNKL-NNT-KAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRG   95 (334)
T ss_dssp             GSSCCCEEECCTT-CCS-SSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             hcCCCCeEECCcc-cCC-CCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhC
Confidence            4579999999999 666 6899999999999999999998777777777654    334577799999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~  164 (410)
                      ++|+||||+.++   +.|+++++.|||+|+.++.. +++++++.+.+++++.+ + +      .+.+||+||.  ..||.
T Consensus        96 ~~~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~-~-~------~~i~~~~np~n~~~g~~  164 (334)
T 3tbh_A           96 YKVIITMPESMS---LERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANP-N-A------VLADQFATKYNALIHEE  164 (334)
T ss_dssp             CEEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCT-T-E------EECCTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCC---HHHHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhCC-C-E------EECCccCChhHHHHHHH
Confidence            999999999887   48999999999999999843 48999999988877642 2 2      2357777763  57999


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++.||++|+.  + .||+||+|+|+||+++|+...+...      .+.++|+.
T Consensus       165 t~~~Ei~~q~~--~-~~d~vv~pvG~GG~~aGi~~~~k~~------~p~~~vig  209 (334)
T 3tbh_A          165 TTGPEIWEQTN--H-NVDCFIAGVGTGGTLTGVARALKKM------GSHARIVA  209 (334)
T ss_dssp             THHHHHHHHTT--S-CCSEEEEECSSSHHHHHHHHHHHHT------TCCCEEEE
T ss_pred             HHHHHHHHHhC--C-CCCEEEeccCCcHhHHHHHHHHHHh------CCCCEEEE
Confidence            99999999964  2 6999999999999999996665432      24567774

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=100.00  E-value=9.8e-36  Score=295.39  Aligned_cols=192  Identities=13%  Similarity=0.110  Sum_probs=163.5

Q ss_pred             ccccccccccccccccCceeEEeecCCCC-CchhhHHHHHHHHHH---HHHcCCCceEEecCchHHHHHHHHHHHHcCCc
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLL---AKFLKKKRIICETGAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~p-tgS~K~R~a~~~~~~---a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~  272 (410)
                      .+|||+++++|++.  +.+||+|+|++|| |||||+|++.+++..   +.+.|  ..|+++|+||||+|+|++|+++|++
T Consensus        95 ~~TPL~~l~~Ls~~--g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~~a~~~g--~~Iv~assGNhG~AlA~aaa~~Gl~  170 (389)
T 1wkv_A           95 KPTPLVRSRLQLPN--GVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKG--SLVADATSSNFGVALSAVARLYGYR  170 (389)
T ss_dssp             CSCCEEECCCCCST--TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTT--CEEEEECCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCeEEccccccC--CCeEEEEEcCCCCCcCChHHHHHHHHHHHHHHHHhcC--CEEEEECCcHHHHHHHHHHHHcCCe
Confidence            57999999998764  5899999999999 999999999999887   44444  5667899999999999999999999


Q ss_pred             EEEEEcCCCccchhhhHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCC--hhHHHhhhhhH
Q psy11239        273 SIIYIGENDYKRQNINVKKIKLLGGTVY-LVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSII  349 (410)
Q Consensus       273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~-~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~  349 (410)
                      |+||||+.. +  ..++.+|+.+||+|+ .++.++++++++++.+..++.  +.+|+       |||  +.++..||+|+
T Consensus       171 ~~ivmp~~~-~--~~k~~~~~~~GAeVv~~v~~~~~~da~~~a~~~~~~~--g~~~~-------~p~~N~~~~~~~~~t~  238 (389)
T 1wkv_A          171 ARVYLPGAA-E--EFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNE--GFVHV-------NQFYNDANFEAHMRGT  238 (389)
T ss_dssp             EEEEEETTS-C--HHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHH--CCEEC-------CTTTCHHHHHHHHHTH
T ss_pred             EEEEECCCC-C--HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcc--CcEec-------CcCCChHHHHHHHHHH
Confidence            999999864 3  367889999999999 775456888888888876665  45665       888  44588999999


Q ss_pred             HHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcCCc
Q psy11239        350 GYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKKRT  404 (410)
Q Consensus       350 g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~~~  404 (410)
                      +.||++|+.+.+..||+||+|+||||+++|++.+|++  +++|||||||.+++...|
T Consensus       239 g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l~G  295 (389)
T 1wkv_A          239 AREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG  295 (389)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTT
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCcccc
Confidence            9999999975456899999999999999999999985  489999999998765543

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=100.00  E-value=2.1e-35  Score=292.40  Aligned_cols=188  Identities=21%  Similarity=0.235  Sum_probs=162.6

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.+.+++| ++|+||||+|+|++|+++|++|+|||
T Consensus        46 ~TPL~~l~~l~~~~-g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~g~~~vv-~aSsGN~g~alA~aa~~~G~~~~iv~  123 (372)
T 1p5j_A           46 KTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFV-CSSAGNAGMAAAYAARQLGVPATIVV  123 (372)
T ss_dssp             CCCEEEEHHHHHHH-TSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTCCEEE-ECCSSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCceEcHhhHHHh-CCEEEEEEcCCCCCCChHHHHHHHHHHHHHHcCCCEEE-EeCCCHHHHHHHHHHHHcCCcEEEEE
Confidence            89999999888777 68999999999999999999999999988877766655 59999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQ  356 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q  356 (410)
                      |+..+   +.|+++++.+||+|+.++ ++++++.+.+.+.+++. ++.+|+       +||++. ...|+.|++.||++|
T Consensus       124 p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~a~~~a~~l~~~~-~~~~~v-------~~~~n~~~~~G~~t~~~Ei~~q  191 (372)
T 1p5j_A          124 PGTTP---ALTIERLKNEGATCKVVG-ELLDEAFELAKALAKNN-PGWVYI-------PPFDDPLIWEGHASIVKELKET  191 (372)
T ss_dssp             CTTCC---HHHHHHHHHTTCEEEECC-SCHHHHHHHHHHHHHHS-TTEEEC-------CSSCCHHHHHHHTHHHHHHHHH
T ss_pred             CCCCC---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc-CCcEEe-------CCCCCHHHHhhHHHHHHHHHHH
Confidence            98654   478999999999999985 45999998888887774 234554       566433 678999999999999


Q ss_pred             hhhcCCCCCEEEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCcC
Q psy11239        357 LNFNFYNKKYILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISKK  402 (410)
Q Consensus       357 ~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~~  402 (410)
                      ++   ..||+||+|+|+|||++|++.++++   +++|||||||++++.+
T Consensus       192 l~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~~~  237 (372)
T 1p5j_A          192 LW---EKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSF  237 (372)
T ss_dssp             CS---SCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHH
T ss_pred             cC---CCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecCCChHH
Confidence            95   4699999999999999999999985   3689999999998754

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=100.00  E-value=7.2e-36  Score=289.32  Aligned_cols=187  Identities=20%  Similarity=0.252  Sum_probs=158.7

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.. +.+||+|+|++|||||||||++.+++..++  +.+++| ++|+||||+|+|++|+++|++|++||
T Consensus        20 ~TPL~~~~~l~~~~-g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~--~~~~vv-~~ssGN~g~alA~~a~~~G~~~~iv~   95 (311)
T 1ve5_A           20 RTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSKALALE--NPKGLL-AVSSGNHAQGVAYAAQVLGVKALVVM   95 (311)
T ss_dssp             CCCEEECHHHHHHT-TSEEEEEEGGGSGGGBTHHHHHHHHHHHSS--SCCCEE-EECSSHHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCCceechhhHHhh-CCeEEEEecCCCCcCCcHHHHHHHHHHHhc--CCCeEE-EECCCcHHHHHHHHHHHcCCCEEEEE
Confidence            89999999888776 689999999999999999999999988776  455554 59999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQ  356 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q  356 (410)
                      |+..++   .|+++++.+||+|+.++ ++++++.+.+.+++++.  +.+|+       +||++. ...||.|++.||++|
T Consensus        96 p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~~~-------~~~~n~~~~~g~~t~~~Ei~~q  162 (311)
T 1ve5_A           96 PEDASP---YKKACARAYGAEVVDRG-VTAKNREEVARALQEET--GYALI-------HPFDDPLVIAGQGTAGLELLAQ  162 (311)
T ss_dssp             CCC--C---CHHHHHHHTTCEEECTT-CCTTTHHHHHHHHHHHH--CCEEC-------CSSSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CcEec-------CCCCCcchhhhccHHHHHHHHH
Confidence            986544   78999999999999885 44788888888877665  45555       666433 678999999999999


Q ss_pred             hhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCc
Q psy11239        357 LNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISK  401 (410)
Q Consensus       357 ~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~  401 (410)
                      +.+.+..||+||+|+|+|||++|++.++++  +++|||+|||++++.
T Consensus       163 ~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~  209 (311)
T 1ve5_A          163 AGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADD  209 (311)
T ss_dssp             HHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCH
T ss_pred             HHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeCCChH
Confidence            964445799999999999999999999985  489999999998764

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=100.00  E-value=4.1e-35  Score=287.52  Aligned_cols=191  Identities=15%  Similarity=0.172  Sum_probs=161.3

Q ss_pred             cccccccccccc----cccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcC
Q psy11239        198 PTPIYYCKNISN----ILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLN  270 (410)
Q Consensus       198 ~tpl~~~~~L~~----~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G  270 (410)
                      .|||+++++|++    .. +.+||+|+|++|||||||+|++.+++..+.+.+.   +..|+++|+||||+|+|++|+.+|
T Consensus        23 ~TPL~~~~~l~~~~~~~~-g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~aa~~~G  101 (343)
T 2pqm_A           23 GTPLVELHGVTEHPRIKK-GTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFG  101 (343)
T ss_dssp             CCCEEECCGGGCSTTSCT-TCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             CCCeEECCcccccccccc-CcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcC
Confidence            799999999887    55 6899999999999999999999999998887665   135566999999999999999999


Q ss_pred             CcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHccCCCceEEecCCCCCCCCh--hHHHhhhh
Q psy11239        271 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP--TIVRDFQS  347 (410)
Q Consensus       271 ~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~  347 (410)
                      ++|+||||+..+   ..++++++.+||+|+.++.. +++++.+.+.+++++.+ ..+|++      +||+  .++..||.
T Consensus       102 ~~~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~-~~y~~~------~~~~n~~n~~~g~~  171 (343)
T 2pqm_A          102 YRVNIAMPSTMS---VERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENP-GKYFVA------NQFGNPDNTAAHHY  171 (343)
T ss_dssp             CCEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHST-TTEEEC------CTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCC---HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC-CcEEEC------CCCCChhHHHHHHH
Confidence            999999998644   37899999999999999753 38889888888887762 232554      4442  22568999


Q ss_pred             hHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcCC
Q psy11239        348 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKKR  403 (410)
Q Consensus       348 t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~~  403 (410)
                      |++ ||++|++   ..||+||+|+|+||+++|++.++++  +++|||||||++++...
T Consensus       172 t~~-Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~  225 (343)
T 2pqm_A          172 TAN-EIWEDTD---GEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLE  225 (343)
T ss_dssp             HHH-HHHHHTT---TCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCTTT
T ss_pred             HHH-HHHHHcC---CCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCcccc
Confidence            999 9999995   3699999999999999999999985  48999999999986543

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=100.00  E-value=4.9e-35  Score=282.41  Aligned_cols=185  Identities=26%  Similarity=0.274  Sum_probs=156.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC--CceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      .|||+++++|+     .+||+|+|++|||||||+|++.+++..+.+.+.  ++ |+++|+||||+|+|++|+++|++|+|
T Consensus        20 ~TPL~~l~~l~-----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~-vv~aSsGN~g~a~A~aa~~~G~~~~i   93 (303)
T 1o58_A           20 STPIVRLDSID-----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG-IVEPTSGNMGIAIAMIGAKRGHRVIL   93 (303)
T ss_dssp             CCCEEECTTTC-----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTC-EEEECSSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEECccCC-----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCC-EEEECchHHHHHHHHHHHHcCCcEEE
Confidence            79999887775     689999999999999999999999998887776  45 55699999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIGYE  352 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~E  352 (410)
                      |||++.+   ..|+++++.+||+|+.++... ++++.+.+.+++++.  +.+| +      +||++  ++..||.|++.|
T Consensus        94 v~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~--~~~~-~------~~~~n~~~~~~g~~t~~~E  161 (303)
T 1o58_A           94 TMPETMS---VERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET--GAHM-L------NQFENPYNVYSHQFTTGPE  161 (303)
T ss_dssp             EEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH--CCBC-C------CTTTCHHHHHHHHHTHHHH
T ss_pred             EECCCCC---HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhc--CeEe-C------CCCCCHHHHHHHHHHHHHH
Confidence            9998644   378999999999999996432 889998888887765  3443 3      45532  245789999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CC-CeEEEEccCCCCcCC
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SN-FKLVAIESGGISKKR  403 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~-~~vigVe~~g~~~~~  403 (410)
                      |++|++   ..||+||+|+|+||+++|++.++++  ++ +|||+|||++++...
T Consensus       162 i~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~~~~~~  212 (303)
T 1o58_A          162 ILKQMD---YQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLS  212 (303)
T ss_dssp             HHHHTT---TCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTT
T ss_pred             HHHHcC---CCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCCCcccc
Confidence            999995   3599999999999999999999986  37 999999999996543

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-35  Score=296.47  Aligned_cols=186  Identities=15%  Similarity=0.063  Sum_probs=155.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||++...+..+.+.+.   + .+|+++|+||||+++|++|+++|
T Consensus       120 ~ig~TPLv~l~~Ls~~~-g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~G  198 (430)
T 4aec_A          120 LIGKTPMVYLNSIAKGC-VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRG  198 (430)
T ss_dssp             GSSCCCEEECCGGGTTC-SSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             cCCCCCeEEChhhhhhc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhC
Confidence            46799999999999887 6899999999999999999998877777766654   2 46777899999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~  164 (410)
                      ++|+||||+.++   +.|+.+++.|||+|+.++.+ +++++++.+.+++++.+ + .      .+.+||+||.  ..||.
T Consensus       199 l~~~IvmP~~~s---~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~~-~-~------~~i~~~~np~~~~aG~~  267 (430)
T 4aec_A          199 YRLILTMPASMS---MERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTP-D-A------YMLQQFDNPANPKIHYE  267 (430)
T ss_dssp             CEEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHST-T-E------EECCTTTCTHHHHHHHH
T ss_pred             CEEEEEEcCCCC---HHHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhcC-C-c------EEecCCCCccHHHHHHH
Confidence            999999999987   58999999999999999853 48899999988877642 1 2      2357888773  58999


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++.||++|+.   ..||+||+|+|+||+++|+...+.+      ..+.++|+.
T Consensus       268 T~a~EI~eQl~---~~~D~vVvpvG~GGtlaGi~~~lk~------~~p~~kVig  312 (430)
T 4aec_A          268 TTGPEIWDDTK---GKVDIFVAGIGTGGTITGVGRFIKE------KNPKTQVIG  312 (430)
T ss_dssp             THHHHHHHHTT---SCEEEEEEECSSSHHHHHHHHHHHH------HCTTSEEEE
T ss_pred             HHHHHHHHHcC---CCCCEEEEeCCccHHHHHHHHHHHH------hCCCCEEEE
Confidence            99999999964   2599999999999999999776643      224677774

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=100.00  E-value=2.3e-35  Score=284.73  Aligned_cols=186  Identities=17%  Similarity=0.127  Sum_probs=152.3

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.   +.+|+++||||||+|+|++|+.+|+
T Consensus         7 ~~~~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~   85 (303)
T 2v03_A            7 TIGNTPLVKLQRMGPDN-GSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGY   85 (303)
T ss_dssp             GSSCCCEEECSSSSCSS-SCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTC
T ss_pred             hcCCCCcEECccccccc-CCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            45799999999999887 5899999999999999999988777666665554   2467777999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccchh
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQSI  165 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~t  165 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++.. +++++.+.+.+++++.. +. |       .+||+||.  ..||.|
T Consensus        86 ~~~iv~p~~~~---~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~-~~-~-------~~~~~n~~~~~~g~~t  153 (303)
T 2v03_A           86 RMKLLMPDNMS---QERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGE-GK-L-------LDQFNNPDNPYAHYTT  153 (303)
T ss_dssp             EEEEEEETTSC---HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTS-CE-E-------CCTTTCTHHHHHHHHT
T ss_pred             cEEEEECCCCC---HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCC-Cc-c-------cCCcCChhhHHHhcCC
Confidence            99999999887   58999999999999999843 58999888888877631 11 2       56777663  358999


Q ss_pred             HHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      ++.||++|+.  + .||+||+|+|+||+++|+...+.+.      .+..+|+.-
T Consensus       154 ~~~Ei~~q~~--~-~~d~vvvpvG~GG~~~Gi~~~~k~~------~p~~~vigv  198 (303)
T 2v03_A          154 TGPEIWQQTG--G-RITHFVSSMGTTGTITGVSRFMREQ------SKPVTIVGL  198 (303)
T ss_dssp             HHHHHHHHTT--T-CCCEEEEECSSSHHHHHHHHHHHTS------SSCCEEEEE
T ss_pred             cHHHHHHHhC--C-CCCEEEEEeCccHhHHHHHHHHHHh------CCCCEEEEE
Confidence            9999999964  2 4899999999999999997666432      235677743

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=100.00  E-value=4.4e-36  Score=290.83  Aligned_cols=184  Identities=20%  Similarity=0.203  Sum_probs=148.5

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+....  + ...|+++|+||||+|+|++|+++|++|+
T Consensus        17 ~~~~TPL~~~~~l~~~~-g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~--~-~~~vv~~ssGN~g~alA~~a~~~G~~~~   92 (311)
T 1ve5_A           17 YTHRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSKALALE--N-PKGLLAVSSGNHAQGVAYAAQVLGVKAL   92 (311)
T ss_dssp             GSCCCCEEECHHHHHHT-TSEEEEEEGGGSGGGBTHHHHHHHHHHHSS--S-CCCEEEECSSHHHHHHHHHHHHHTCCEE
T ss_pred             cCCCCCceechhhHHhh-CCeEEEEecCCCCcCCcHHHHHHHHHHHhc--C-CCeEEEECCCcHHHHHHHHHHHcCCCEE
Confidence            56799999999998877 689999999999999999998766644433  3 3345556999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.  +.       .+.+||+|| .+.||.|+++||
T Consensus        93 iv~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~-------~~~~~~~n~~~~~g~~t~~~Ei  159 (311)
T 1ve5_A           93 VVMPEDAS---PYKKACARAYGAEVVDRG-VTAKNREEVARALQEET--GY-------ALIHPFDDPLVIAGQGTAGLEL  159 (311)
T ss_dssp             EECCCC-----CCHHHHHHHTTCEEECTT-CCTTTHHHHHHHHHHHH--CC-------EECCSSSSHHHHHHHHHHHHHH
T ss_pred             EEECCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--Cc-------EecCCCCCcchhhhccHHHHHH
Confidence            99999887   479999999999999887 67888888888877653  22       236788777 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|+...+..||+||+|+|+||+++|+...+.+.      .+..+|+.
T Consensus       160 ~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~------~~~~~vig  201 (311)
T 1ve5_A          160 LAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKAL------SPTTLVLG  201 (311)
T ss_dssp             HHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHH------CTTSEEEE
T ss_pred             HHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHh------CCCCEEEE
Confidence            9997533235899999999999999997666432      23567774

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=100.00  E-value=7.1e-36  Score=290.82  Aligned_cols=185  Identities=18%  Similarity=0.234  Sum_probs=155.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHH-cCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+ .+.+++ +++|+||||+++|++|+++|++|++|
T Consensus        26 ~TPL~~~~~l~~~~-g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~~~~~v-v~~ssGN~g~alA~~a~~~G~~~~iv  103 (323)
T 1v71_A           26 KTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGV-LTFSSGNHAQAIALSAKILGIPAKII  103 (323)
T ss_dssp             CCCEECCHHHHHHH-TSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHHHCE-EECCSSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceEhHhhHHHh-CCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCCeE-EEeCCCcHHHHHHHHHHHcCCCEEEE
Confidence            89999999888776 6899999999999999999999999875543 334445 55999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+   ..++++++.+||+|+.++ ++++++.+.+.++.++.  +.+|+       +||++. ...||+|++.||++
T Consensus       104 ~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~l~~~~--~~~~i-------~~~~n~~~~~g~~t~~~Ei~~  170 (323)
T 1v71_A          104 MPLDAP---EAKVAATKGYGGQVIMYD-RYKDDREKMAKEISERE--GLTII-------PPYDHPHVLAGQGTAAKELFE  170 (323)
T ss_dssp             EETTCC---HHHHHHHHHTTCEEEEEC-TTTTCHHHHHHHHHHHH--TCBCC-------CSSSSHHHHHHHTHHHHHHHH
T ss_pred             CCCCCc---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEec-------CCCCCcchhhhHhHHHHHHHH
Confidence            998654   378999999999999996 34666777777776665  45554       555333 57899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCc
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISK  401 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~  401 (410)
                      |++    .+|+||+|+|||||++|++.++++  +++|||||||++++.
T Consensus       171 q~~----~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~~~~~  214 (323)
T 1v71_A          171 EVG----PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGND  214 (323)
T ss_dssp             HHC----CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCH
T ss_pred             hcC----CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeCCCch
Confidence            994    699999999999999999999985  489999999998764

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=100.00  E-value=2e-35  Score=300.77  Aligned_cols=186  Identities=24%  Similarity=0.289  Sum_probs=161.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHc-CCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL-KKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~-g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+. +.+++ +++|+||||+++|++|+++|++|+||
T Consensus        31 ~TPL~~l~~Ls~~~-g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~~~gV-V~aSsGNhg~avA~aa~~lGi~~~Iv  108 (514)
T 1tdj_A           31 VTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGV-ITASAGNHAQGVAFSSARLGVKALIV  108 (514)
T ss_dssp             CCCEEECHHHHHHT-TSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSCSSSC-EEEECSSSHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcEEchhhHHhh-CCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcCCCEE-EEECCcHHHHHHHHHHHHcCCcEEEE
Confidence            89999999998877 68999999999999999999999998876543 33455 55999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+.   .|+++++.+||+|+.++ ++++++.+.+.++.++.  +.+|+       +||++. +++||+|++.||++
T Consensus       109 mP~~~p~---~Kv~~~r~~GAeVvlv~-~~~dda~~~a~ela~e~--g~~~v-------~pfdnp~~iaGqgTig~EI~e  175 (514)
T 1tdj_A          109 MPTATAD---IKVDAVRGFGGEVLLHG-ANFDEAKAKAIELSQQQ--GFTWV-------PPFDHPMVIAGQGTLALELLQ  175 (514)
T ss_dssp             CCSSCCH---HHHHHHHHHSCEEECCC-SSHHHHHHHHHHHHHHH--CCEEC-------CSSCCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEee-------CCCCCHHHHHHHHHHHHHHHH
Confidence            9986543   78999999999999985 45999999999988776  45666       788544 77899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      |++    .+|+||+|+|+||+++|++.++++  +++|||||||++++..
T Consensus       176 Ql~----~~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~~a~~l  220 (514)
T 1tdj_A          176 QDA----HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACL  220 (514)
T ss_dssp             HCT----TCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHH
T ss_pred             HCC----CCCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEeccCChhH
Confidence            995    399999999999999999999985  5899999999988754

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=100.00  E-value=5.6e-36  Score=291.53  Aligned_cols=183  Identities=17%  Similarity=0.203  Sum_probs=147.6

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      .+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+......|+++|+||||+|+|++|+.+|++|+
T Consensus        23 ~i~~TPL~~~~~l~~~~-g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~~~~~vv~~ssGN~g~alA~~a~~~G~~~~  101 (323)
T 1v71_A           23 FANKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAK  101 (323)
T ss_dssp             TSCCCCEECCHHHHHHH-TSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHHHCEEECCSSHHHHHHHHHHHHTTCCEE
T ss_pred             cCCCCCceEhHhhHHHh-CCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCCeEEEeCCCcHHHHHHHHHHHcCCCEE
Confidence            56899999999998887 68999999999999999999876554322211222356667999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.  +.+       +.+||+|| .+.||+|++.||
T Consensus       102 iv~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~l~~~~--~~~-------~i~~~~n~~~~~g~~t~~~Ei  168 (323)
T 1v71_A          102 IIMPLDAP---EAKVAATKGYGGQVIMYD-RYKDDREKMAKEISERE--GLT-------IIPPYDHPHVLAGQGTAAKEL  168 (323)
T ss_dssp             EEEETTCC---HHHHHHHHHTTCEEEEEC-TTTTCHHHHHHHHHHHH--TCB-------CCCSSSSHHHHHHHTHHHHHH
T ss_pred             EECCCCCc---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCE-------ecCCCCCcchhhhHhHHHHHH
Confidence            99999887   589999999999999998 56777888888876654  222       35777776 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|+.    .+|+||+|+||||+++|+...|.+.      .+.++|+.
T Consensus       169 ~~q~~----~~d~vv~~vG~GGt~~Gi~~~~k~~------~~~~~vig  206 (323)
T 1v71_A          169 FEEVG----PLDALFVCLGGGGLLSGSALAARHF------APNCEVYG  206 (323)
T ss_dssp             HHHHC----CCSEEEEECSSSHHHHHHHHHHHHH------CTTCEEEE
T ss_pred             HHhcC----CCCEEEEecCCcHHHHHHHHHHHHc------CCCCEEEE
Confidence            99974    4899999999999999997666432      23567774

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=286.31  Aligned_cols=185  Identities=18%  Similarity=0.149  Sum_probs=152.9

Q ss_pred             CCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         11 KKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        11 ~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ....+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+. ..|+++||||||+|+|++|+++|++|
T Consensus         3 ~~~~~TPL~~~~~l~~~~-g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~-~~vv~~ssGN~g~alA~~a~~~G~~~   80 (318)
T 2rkb_A            3 PFHVVTPLLESWALSQVA-GMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGC-RHLVCSSGGNAGIAAAYAARKLGIPA   80 (318)
T ss_dssp             CSSCCCCEEEEHHHHHHH-TSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-CEEEECCCSHHHHHHHHHHHHHTCCE
T ss_pred             CCCccCCceehHhhHHHh-CCeEEEEecCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEECCchHHHHHHHHHHHcCCCE
Confidence            356799999999998887 5899999999999999999988766666666553 45566799999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      +||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.  +.       .+.+||+|| .+.||.|++.|
T Consensus        81 ~i~~p~~~~---~~k~~~~~~~Ga~V~~~~-~~~~~~~~~a~~~~~~~--~~-------~~~~~~~n~~~~~g~~t~~~E  147 (318)
T 2rkb_A           81 TIVLPESTS---LQVVQRLQGEGAEVQLTG-KVWDEANLRAQELAKRD--GW-------ENVPPFDHPLIWKGHASLVQE  147 (318)
T ss_dssp             EEEECTTCC---HHHHHHHHHTTCEEEECC-SSHHHHHHHHHHHHHST--TE-------EECCSSCSHHHHHHHHHHHHH
T ss_pred             EEEECCCCc---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EEeCCCCChhhccchhHHHHH
Confidence            999999887   589999999999999998 68999988888877653  22       235778777 47899999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++|+.   ..||+||+|+|+||+++|+...+.+..     .+..+|+.
T Consensus       148 i~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~-----~~~~~vi~  188 (318)
T 2rkb_A          148 LKAVLR---TPPGALVLAVGGGGLLAGVVAGLLEVG-----WQHVPIIA  188 (318)
T ss_dssp             HHHHSS---SCCSEEEEECSSSHHHHHHHHHHHHHT-----CTTSCEEE
T ss_pred             HHHhcC---CCCCEEEEeeCCCcHHHHHHHHHHHhC-----CCCCEEEE
Confidence            999964   258999999999999999977765321     13466764

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=100.00  E-value=5.3e-35  Score=283.81  Aligned_cols=186  Identities=16%  Similarity=0.081  Sum_probs=150.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++| + + +.+||+|+|++|||||||||.+...+..+.+.+.   +.+|+++||||||+|+|++|+.+|+
T Consensus        10 ~~~~TPL~~l~~l-~-~-g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~   86 (316)
T 1y7l_A           10 SIGNTPLVRLKHF-G-H-NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGY   86 (316)
T ss_dssp             GCCCCCEEECSSS-S-S-TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTC
T ss_pred             hcCCCCcEECccC-C-C-CCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence            4579999999999 6 6 6899999999999999999988777666666554   2577778999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccchh
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQSI  165 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~t  165 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++.. +++++.+.+.+++++.+ +.+|      ..+||+|+.  ..||.|
T Consensus        87 ~~~iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~-~~~~------~~~~~~n~~~~~~g~~t  156 (316)
T 1y7l_A           87 KITLTMPETMS---LERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDP-SRYV------MLKQFENPANPQIHRET  156 (316)
T ss_dssp             CEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCT-TTEE------CCCTTTCTHHHHHHHHT
T ss_pred             cEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCC-CCEE------ECCCCCCHHHHHHHHHH
Confidence            99999999887   58999999999999999832 38899999888877652 1202      356676663  357999


Q ss_pred             HHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++.||++|+.  + .||+||+|+|+||+++|+...+.+...     +.++|+.
T Consensus       157 ~~~Ei~~q~~--~-~~d~vvvpvG~GG~~~Gi~~~~k~~~~-----~~~~vi~  201 (316)
T 1y7l_A          157 TGPEIWKDTD--G-KVDVVVAGVGTGGSITGISRAIKLDFG-----KQITSVA  201 (316)
T ss_dssp             HHHHHHHHTT--T-CEEEEEEECSSSHHHHHHHHHHHHTSC-----CCCEEEE
T ss_pred             HHHHHHHHcC--C-CCCEEEEeCCccccHHHHHHHHHHhCC-----CCCEEEE
Confidence            9999999964  2 489999999999999999776653210     3567774

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=100.00  E-value=2e-35  Score=291.78  Aligned_cols=175  Identities=20%  Similarity=0.159  Sum_probs=149.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||++...+..+.+.+.. +|+++||||||+|+|++|+++|++|+
T Consensus        43 ~~~~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~-~vv~aSsGN~g~alA~aa~~~G~~~~  120 (364)
T 4h27_A           43 LHVKTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCA-HFVCSSSGNAGMAAAYAARQLGVPAT  120 (364)
T ss_dssp             SSCCCCEEEEHHHHHHH-TSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCC-EEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred             CCCcCCeEEChhhHHHh-CCEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcCCC-EEEEeCCChHHHHHHHHHHHhCCceE
Confidence            56799999999999888 67999999999999999999877666666665554 45557999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.+ +.       .+.+||+|| .+.||.|++.||
T Consensus       121 iv~p~~~~---~~k~~~~~~~GA~Vv~v~-~~~~~a~~~a~~l~~~~~-~~-------~~~~~~~np~~~~G~~t~~~Ei  188 (364)
T 4h27_A          121 IVVPGTTP---ALTIERLKNEGATVKVVG-ELLDEAFELAKALAKNNP-GW-------VYIPPFDDPLIWEGHASIVKEL  188 (364)
T ss_dssp             EEEETTSC---HHHHHHHHTTTCEEEEEC-SSTTHHHHHHHHHHHHST-TE-------EEECSSCSHHHHHHHTHHHHHH
T ss_pred             EEECCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhCC-Ce-------EEeCCCCCHHHHHHHHHHHHHH
Confidence            99999987   489999999999999998 688999999988877641 22       236778777 479999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      ++|+.  + .||+||+|+|+||+++|+...+.+
T Consensus       189 ~~q~~--~-~~D~vvvpvG~GG~~aGi~~~~k~  218 (364)
T 4h27_A          189 KETLW--E-KPGAIALSVGGGGLLCGVVQGLQE  218 (364)
T ss_dssp             HHHCS--S-CCSEEEEECSSSHHHHHHHHHHHH
T ss_pred             HHHhC--C-CCCEEEEcCCccHHHHHHHHHHHH
Confidence            99964  2 589999999999999999777653

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=100.00  E-value=2.3e-34  Score=283.26  Aligned_cols=187  Identities=18%  Similarity=0.199  Sum_probs=159.8

Q ss_pred             ccccccc--ccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        198 PTPIYYC--KNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       198 ~tpl~~~--~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      .|||+++  ++|++.. +++||+|+|++||+||||+|++.+++..+.+.|.+++|+ +|+||||+|+|++|+++|++|+|
T Consensus        28 ~TPL~~~~~~~l~~~~-g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~~g~~~vv~-~SsGN~g~alA~~a~~~G~~~~i  105 (351)
T 3aey_A           28 STPLIPLKGPEEARKK-GIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVAC-ASTGNTAASAAAYAARAGILAIV  105 (351)
T ss_dssp             CCCEEECCCCHHHHTT-TCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCSEEEE-SCSSHHHHHHHHHHHHHTSEEEE
T ss_pred             CCCeeecCchhhHHHh-CCeEEEEecCCCCcccHHHHHHHHHHHHHHhcCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEE
Confidence            7999999  8887776 689999999999999999999999999998888876655 99999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ  355 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~  355 (410)
                      |||++..+  ..|+++++.+||+|+.++ ++++++.+.+.+..++.  + .|++++ .  ||+   ...||.|++.||++
T Consensus       106 v~p~~~~~--~~k~~~~~~~GA~V~~v~-~~~~~~~~~a~~l~~~~--~-~~~~~~-~--n~~---~~~g~~t~~~Ei~~  173 (351)
T 3aey_A          106 VLPAGYVA--LGKVAQSLVHGARIVQVE-GNFDDALRLTQKLTEAF--P-VALVNS-V--NPH---RLEGQKTLAFEVVD  173 (351)
T ss_dssp             EEETTCSC--HHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHHS--S-EEECST-T--CHH---HHHHHHHHHHHHHH
T ss_pred             EECCCCCC--HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-cEecCC-C--Ccc---ceeeeeeHHHHHHH
Confidence            99986233  478999999999999996 45999988888877765  3 444432 2  322   56799999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCc
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISK  401 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~  401 (410)
                      |++   ..||+||+|+|||||++|++.++++.        .+|||+|||++++.
T Consensus       174 q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~  224 (351)
T 3aey_A          174 ELG---DAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAP  224 (351)
T ss_dssp             HHS---SCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCH
T ss_pred             HcC---CCCCEEEEecCchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCCh
Confidence            995   46899999999999999999999753        58999999998754

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=100.00  E-value=2.6e-34  Score=287.29  Aligned_cols=198  Identities=18%  Similarity=0.203  Sum_probs=163.4

Q ss_pred             ccccccccccccccccCceeEEeecCCC-CCchhhHHHHHHHHHHH--HH----------------cCCCceEEecCchH
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLN-FTGAHKMNNSIAQSLLA--KF----------------LKKKRIICETGAGM  257 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~-ptgS~K~R~a~~~~~~a--~~----------------~g~~~~v~~~ssGN  257 (410)
                      ..|||+++++|++..+..+||+|+|++| |+||||+|++.+++..+  ++                .+.+..|+++|+||
T Consensus        43 ~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aSsGN  122 (398)
T 4d9i_A           43 RPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTDGN  122 (398)
T ss_dssp             CCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEECSSH
T ss_pred             CCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEECCCH
Confidence            4899999999988873369999999999 99999999999998876  22                23441455699999


Q ss_pred             HHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCC
Q psy11239        258 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHP  337 (410)
Q Consensus       258 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  337 (410)
                      ||+++|++|+++|++|+||||+..+.   .++.+++.+||+|+.++ ++++++.+.+.+.+++.  +.+| +.+..+ ++
T Consensus       123 hg~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~Vv~v~-~~~~~a~~~a~~~~~~~--g~~~-v~~~~~-~g  194 (398)
T 4d9i_A          123 HGRGVAWAAQQLGQNAVIYMPKGSAQ---ERVDAILNLGAECIVTD-MNYDDTVRLTMQHAQQH--GWEV-VQDTAW-EG  194 (398)
T ss_dssp             HHHHHHHHHHHHTCEEEEEECTTCCH---HHHHHHHTTTCEEEECS-SCHHHHHHHHHHHHHHH--TCEE-CCSSCB-TT
T ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHHc--CCEE-ecCccc-CC
Confidence            99999999999999999999986543   78999999999999986 46999999998887775  4444 433221 35


Q ss_pred             Ch---hHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc----CCCeEEEEccCCCCcC
Q psy11239        338 YP---TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN----SNFKLVAIESGGISKK  402 (410)
Q Consensus       338 ~~---~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~----~~~~vigVe~~g~~~~  402 (410)
                      |+   .++..||.|++.||++|+++.+..||+||+|+|+|||++|++.++++    ++++||+|||++++.+
T Consensus       195 ~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~  266 (398)
T 4d9i_A          195 YTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCI  266 (398)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHH
T ss_pred             cCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchH
Confidence            64   23889999999999999985455699999999999999999999953    4799999999998754

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=100.00  E-value=1.4e-34  Score=283.68  Aligned_cols=199  Identities=18%  Similarity=0.097  Sum_probs=162.2

Q ss_pred             ccccccccccccccccC-ceeEEeecCCC-C--CchhhHHHHHHHHHHHHHcCCCceEEe--cCchHHHHHHHHHHHHcC
Q psy11239        197 RPTPIYYCKNISNILKG-SKIFLKREDLN-F--TGAHKMNNSIAQSLLAKFLKKKRIICE--TGAGMHGVSTATSCCLLN  270 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~-~~v~~K~e~~~-p--tgS~K~R~a~~~~~~a~~~g~~~~v~~--~ssGN~g~a~A~~a~~~G  270 (410)
                      ..|||+++++|++.+++ .+||+|+|++| |  +||||+|++.+++..+.+.|.+++ ++  +|+||||+++|++|+++|
T Consensus        14 ~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~~~v-v~~G~ssGN~g~alA~~a~~~G   92 (341)
T 1f2d_A           14 GPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHL-VSIGGRQSNQTRMVAALAAKLG   92 (341)
T ss_dssp             SSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSEE-EEEEETTCHHHHHHHHHHHHHT
T ss_pred             CCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEE-EEcCCcchHHHHHHHHHHHHhC
Confidence            48999999988876634 89999999998 9  999999999999999988888755 46  899999999999999999


Q ss_pred             CcEEEEEcCCCc-----c---chhhhHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHHccCCCceEEecC-CCCCCC
Q psy11239        271 LESIIYIGENDY-----K---RQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGT-ASGPHP  337 (410)
Q Consensus       271 ~~~~vv~p~~~~-----~---~~~~~~~~~~~~Ga~v~~v~~g~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~  337 (410)
                      ++|++|||+..+     +   ++..|+++++.+||+|+.++....    +++.+.+.++.++. +..+|+..+ +.  ||
T Consensus        93 ~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~-~~~~~i~~~~~~--np  169 (341)
T 1f2d_A           93 KKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAG-HKPYPIPAGCSE--HK  169 (341)
T ss_dssp             CEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTT-CCEEEECGGGTT--ST
T ss_pred             CceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcC-CcEEEeCCCcCC--CC
Confidence            999999998665     1   113589999999999999975433    35566666666554 123444445 54  44


Q ss_pred             ChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        338 YPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       338 ~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      +   ...||.|++.||++|+++.+..||+||+|+|||||++|++.++++  +++|||||||.+++.+
T Consensus       170 ~---~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~  233 (341)
T 1f2d_A          170 Y---GGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEK  233 (341)
T ss_dssp             T---TTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHH
T ss_pred             c---cHHHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHH
Confidence            4   356899999999999975456899999999999999999999986  4899999999998643

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=100.00  E-value=1e-34  Score=280.31  Aligned_cols=186  Identities=16%  Similarity=0.089  Sum_probs=151.6

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---Cc--eEEEeCccHHHHHHHHHHHHc
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KR--IICETGAGMHGVSTATSCCLL   86 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~--~v~~~ssGN~g~a~A~~a~~~   86 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.   +.  +|+++|+||||+|+|++|+++
T Consensus         6 ~~~~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~   84 (304)
T 1ve1_A            6 AIGKTPVVRLAKVVEPD-MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASR   84 (304)
T ss_dssp             GCCCCCEEECCSSSCTT-SCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHH
T ss_pred             hcCCCCcEECccccccc-CCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHc
Confidence            45799999999999887 6899999999999999999988776666665553   24  777789999999999999999


Q ss_pred             CCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-HHHHHHHHHHHHhhcccCCcccccccccCcccccc-cccc-c
Q psy11239         87 NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDF-Q  163 (410)
Q Consensus        87 G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g-~  163 (410)
                      |++|+||||+.++   +.|+++|+.|||+|+.++... ++++.+.+.+++++.  +.       ...+||+|| .+.+ |
T Consensus        85 G~~~~i~~p~~~~---~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~~--~~-------~~~~~~~n~~~~~g~~  152 (304)
T 1ve1_A           85 GYRLILTMPAQMS---EERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL--GA-------FMPDQFKNPANVRAHY  152 (304)
T ss_dssp             TCEEEEEEETTCC---HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH--TC-------BCCCTTTCHHHHHHHH
T ss_pred             CCcEEEEeCCCCC---HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhcC--CC-------EeCCCCCChhHHHHHH
Confidence            9999999999877   589999999999999998432 899988888877653  22       235677776 3556 7


Q ss_pred             hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      .|++.||++|+.  + .||+||+|+|+||+++|+...+.+.      .+..+|+.-
T Consensus       153 ~t~~~Ei~~q~~--~-~~d~vvvpvG~GG~~~Gi~~~~k~~------~~~~~vi~v  199 (304)
T 1ve1_A          153 ETTGPELYEALE--G-RIDAFVYGSGTGGTITGVGRYLKER------IPHVKVIAV  199 (304)
T ss_dssp             HTHHHHHHHHTT--T-CCSEEEEECSSSHHHHHHHHHHHTT------CTTCEEEEE
T ss_pred             HHHHHHHHHHcC--C-CCCEEEEecCCchhHHHHHHHHHHh------CCCCEEEEE
Confidence            999999999964  2 4899999999999999997666432      235677743

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=100.00  E-value=6e-35  Score=284.17  Aligned_cols=186  Identities=15%  Similarity=0.072  Sum_probs=152.3

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCC----ceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK----RIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~----~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+..    .+|+++|+||||+|+|++|+.+|
T Consensus        12 ~~~~TPL~~~~~l~~~~-g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G   90 (322)
T 1z7w_A           12 LIGNTPLVYLNNVAEGC-VGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKG   90 (322)
T ss_dssp             GSSCCCEEECCGGGTTC-SSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             hcCCCCeEECccccccC-CceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcC
Confidence            45799999999998876 68999999999999999999887776666666641    36666899999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~  164 (410)
                      ++|+||||+.++   +.|+++|+.|||+|+.++.. +++++.+.+.+++++.+ + .      .+.+||+|+.  ..||.
T Consensus        91 ~~~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~-~-~------~~i~~~~n~~~~~~g~~  159 (322)
T 1z7w_A           91 YKLIITMPASMS---TERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTP-N-G------YMLQQFENPANPKIHYE  159 (322)
T ss_dssp             CEEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCT-T-E------EECCTTTCTHHHHHHHH
T ss_pred             CCEEEEeCCCCC---HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCC-C-e------EeCCCCCChhHHHHHHH
Confidence            999999999877   58999999999999999843 37889888888877642 2 2      2357777663  36999


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |++.||++|+.   ..||+||+|+|+||+++|+...|.+.      .+.++|+.
T Consensus       160 t~~~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~------~p~~~vig  204 (322)
T 1z7w_A          160 TTGPEIWKGTG---GKIDGFVSGIGTGGTITGAGKYLKEQ------NANVKLYG  204 (322)
T ss_dssp             THHHHHHHHTT---TCCCEEEEECSSSHHHHHHHHHHHHH------CTTCEEEE
T ss_pred             HHHHHHHHHhc---CCCCEEEEecCccHhHHHHHHHHHHc------CCCCEEEE
Confidence            99999999964   25899999999999999997766432      23567774

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=100.00  E-value=2.9e-34  Score=290.02  Aligned_cols=193  Identities=14%  Similarity=0.112  Sum_probs=161.8

Q ss_pred             cccccccccccc----cccc---CceeEEeecCCCC-CchhhHHHHHHHHHH-----HHHcCCC----------------
Q psy11239        197 RPTPIYYCKNIS----NILK---GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKKK----------------  247 (410)
Q Consensus       197 ~~tpl~~~~~L~----~~~~---~~~v~~K~e~~~p-tgS~K~R~a~~~~~~-----a~~~g~~----------------  247 (410)
                      ..|||+++++|+    +.++   +.+||+|+|++|| |||||+|++.+++..     +++.|..                
T Consensus        77 ~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~  156 (442)
T 3ss7_X           77 IESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQ  156 (442)
T ss_dssp             CCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHH
T ss_pred             CCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhh
Confidence            489999999876    5553   4899999999999 999999999999874     6676652                


Q ss_pred             ----ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCC
Q psy11239        248 ----RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNIL  323 (410)
Q Consensus       248 ----~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~  323 (410)
                          ..|+++|+||||+++|++|+++|++|+||||++.+.   .|+.+++.+||+|+.++ ++++++.+.+.+.+++.  
T Consensus       157 ~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~---~k~~~~r~~GA~Vv~v~-~~~~~a~~~a~~~a~~~--  230 (442)
T 3ss7_X          157 FFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARA---WKKAKLRSHGVTVVEYE-QDYGVAVEEGRKAAQSD--  230 (442)
T ss_dssp             HHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEES-SCHHHHHHHHHHHHHTC--
T ss_pred             hccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhC--
Confidence                256779999999999999999999999999986443   78999999999999996 45999999999987775  


Q ss_pred             CceEEecCCCCCCCChh-HHHhhhhhHHHHHHHhhhhcC-----CCCCEEEEccCchhHHHHHHHHHhc---CCCeEEEE
Q psy11239        324 NSHYLIGTASGPHPYPT-IVRDFQSIIGYEIHQQLNFNF-----YNKKYILACVGGGSNALGIFYTFIN---SNFKLVAI  394 (410)
Q Consensus       324 ~~~~~~~~~~~~~~~~~-~~~~g~~t~g~Ei~~q~~~~~-----~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vigV  394 (410)
                      +..|++      +++++ ++..||+|+|.||++|+++.+     ..||+||+|+|+||+++|++.++++   +++|||||
T Consensus       231 ~~~~~i------~~~n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~~~~v~vigV  304 (442)
T 3ss7_X          231 PNCFFI------DDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFA  304 (442)
T ss_dssp             TTEEEC------CTTTCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred             CCceeC------CCCChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhcCCCCEEEEE
Confidence            334554      33332 378999999999999997543     3466999999999999999999985   48999999


Q ss_pred             ccCCCCc
Q psy11239        395 ESGGISK  401 (410)
Q Consensus       395 e~~g~~~  401 (410)
                      ||++++.
T Consensus       305 ep~~~~~  311 (442)
T 3ss7_X          305 EPTHSPC  311 (442)
T ss_dssp             EETTCCH
T ss_pred             EeCCchH
Confidence            9999974

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=100.00  E-value=2.1e-34  Score=283.60  Aligned_cols=187  Identities=22%  Similarity=0.290  Sum_probs=160.3

Q ss_pred             cccccccccccccccCce--eEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        198 PTPIYYCKNISNILKGSK--IFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~--v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      .|||+++++|++.. +++  ||+|+|++||+||||+|++.+++..+.+.|.+++|+ +|+||||+|+|++|+++|++|+|
T Consensus        30 ~TPL~~~~~l~~~~-g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~~g~~~vv~-~SsGN~g~alA~~a~~~G~~~~i  107 (352)
T 2zsj_A           30 NTPLIEADNLARAI-GFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGKRAVIC-ASTGNTSASAAAYAARAGLRAYV  107 (352)
T ss_dssp             CCCEEECHHHHHHH-TCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCEEEE-CCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCeehHHHHHHh-CCCceEEEEECCCCCCccHHHHHHHHHHHHHHhcCCCEEEE-eCCchHHHHHHHHHHhcCCcEEE
Confidence            79999999888776 677  999999999999999999999999998888877665 99999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ  355 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~  355 (410)
                      |||++..+  +.|+++++.+||+|+.++ ++++++.+.+.++.++.  + .|++++ .  ||+   ...||.|++.||++
T Consensus       108 ~~p~~~~~--~~k~~~~~~~GA~v~~v~-~~~~~~~~~a~~l~~~~--~-~~~~~~-~--n~~---~~~g~~t~~~Ei~~  175 (352)
T 2zsj_A          108 LLPKGAVA--IGKLSQAMIYGAKVLAIQ-GTFDDALNIVRKIGENF--P-VEIVNS-V--NPY---RIEGQKTAAFEICD  175 (352)
T ss_dssp             EEEGGGCC--HHHHHHHHHTTCEEEEES-SCHHHHHHHHHHHHHHS--S-EEECST-T--CTH---HHHHHTHHHHHHHH
T ss_pred             EECCCCCC--HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHHc--C-cEECCC-C--Ccc---hhhhHhHHHHHHHH
Confidence            99975233  478999999999999996 45999988888877765  3 444443 2  333   46899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCc
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISK  401 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~  401 (410)
                      |++   ..||+||+|+|||||++|++.++++.        .+|||+|||.+++.
T Consensus       176 q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~  226 (352)
T 2zsj_A          176 TLG---EAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAP  226 (352)
T ss_dssp             HHS---SCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBCH
T ss_pred             HcC---CCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCcH
Confidence            995   46899999999999999999999753        58999999999754

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.7e-34  Score=283.53  Aligned_cols=188  Identities=19%  Similarity=0.236  Sum_probs=161.3

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.|.+++|+ +|+||||+|+|++|+++|++|+|||
T Consensus        38 ~TPL~~~~~l~~~~-g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~~g~~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~  115 (360)
T 2d1f_A           38 GTPLIAATNLSKQT-GCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQRAVLC-ASTGNTSASAAAYAARAGITCAVLI  115 (360)
T ss_dssp             CCCEEECHHHHHHH-SSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCSEEEE-CCSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCeechhhHHHh-CCeEEEEECCCCCCcCHHHHHHHHHHHHHHHCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEE
Confidence            79999999998777 689999999999999999999999999998888876665 9999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      |+...+  ..|+++++.+||+|+.++ ++++++.+.+.+..++.  +..|++++ .  ||+   ...||.|++.||++|+
T Consensus       116 p~~~~~--~~k~~~~~~~GA~v~~v~-~~~~~~~~~a~~l~~~~--~~~~~i~~-~--n~~---~~~g~~t~~~Ei~~q~  184 (360)
T 2d1f_A          116 PQGKIA--MGKLAQAVMHGAKIIQID-GNFDDCLELARKMAADF--PTISLVNS-V--NPV---RIEGQKTAAFEIVDVL  184 (360)
T ss_dssp             CSSCCC--HHHHHHHHHTTCEEEEBS-SCHHHHHHHHHHHHHHC--TTEEECST-T--CHH---HHHHHTHHHHHHHHHH
T ss_pred             cCCCCC--HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCeEEcCC-C--Chh---hhhhHHHHHHHHHHHc
Confidence            986233  478999999999999986 45999988888887765  33555543 2  322   5679999999999999


Q ss_pred             hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCc
Q psy11239        358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISK  401 (410)
Q Consensus       358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~  401 (410)
                      +   ..||+||+|+|+||+++|++.++++.        .+|||+|||++++.
T Consensus       185 ~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~  233 (360)
T 2d1f_A          185 G---TAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAP  233 (360)
T ss_dssp             S---SCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCH
T ss_pred             C---CCCCEEEEeCCchHHHHHHHHHHHHHHhccccccCceEEEEecCCCCH
Confidence            5   46899999999999999999999753        58999999998754

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=100.00  E-value=8.7e-35  Score=281.95  Aligned_cols=187  Identities=16%  Similarity=0.126  Sum_probs=152.0

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.   +.+|+++|+||||+|+|++|+.+|+
T Consensus        13 ~~~~TPL~~~~~l~~~~-g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~a~~~G~   91 (313)
T 2q3b_A           13 LIGRTPLVRLRRVTDGA-VADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVCAARGY   91 (313)
T ss_dssp             GSCCCCEEECSSSCTTC-CSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTC
T ss_pred             hcCCCceEECccccccc-CcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCC
Confidence            45799999999998876 6899999999999999999988766666666554   2466668999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc-c-ccchh
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV-R-DFQSI  165 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~g~~t  165 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++.. +++++.+.+.+++++.+  ..|      .++||+||. + .||.|
T Consensus        92 ~~~iv~p~~~~---~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~~--~~~------~~~~~~n~~~~~~~~~t  160 (313)
T 2q3b_A           92 RCVLTMPETMS---LERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQ--RYF------VPQQFENPANPAIHRVT  160 (313)
T ss_dssp             EEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCT--TEE------CCCTTTCTHHHHHHHHT
T ss_pred             cEEEEECCCCC---HHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhCC--CEE------eCCCCCChhhHHHHHHH
Confidence            99999999887   58999999999999999843 48899998888887652  112      356777663 3 56999


Q ss_pred             HHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      ++.||++|+.  + .||+||+|+|+||+++|+...+.+      ..+..+|+.-
T Consensus       161 ~~~Ei~~q~~--~-~~d~vvvpvG~GG~~~Gi~~~~k~------~~~~~~vi~v  205 (313)
T 2q3b_A          161 TAEEVWRDTD--G-KVDIVVAGVGTGGTITGVAQVIKE------RKPSARFVAV  205 (313)
T ss_dssp             HHHHHHHHTT--T-CCCEEEEECSSSHHHHHHHHHHHH------HCTTCEEEEE
T ss_pred             HHHHHHHHcC--C-CCCEEEEccCcchhHHHHHHHHHH------hCCCCEEEEE
Confidence            9999999964  2 489999999999999999666543      2235677753

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=100.00  E-value=7.6e-35  Score=281.73  Aligned_cols=185  Identities=17%  Similarity=0.152  Sum_probs=143.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.   +.+|+++|+||||+|+|++|+.+|+
T Consensus        11 ~~~~TPL~~l~~l~~~~-g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~a~A~~a~~~G~   89 (308)
T 2egu_A           11 LIGDTPAVKLNRIVDED-SADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGY   89 (308)
T ss_dssp             GSSCCCEEECCSSSCTT-SCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECCHHHHHHHHHHHHHHTC
T ss_pred             hcCCCCeEECCcccccC-CCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCC
Confidence            45689999999998877 5899999999999999999988766666665554   2466668999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccchh
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQSI  165 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~t  165 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++.. +++++.+.+.+++++.+  . |      .++||+|+.  ..||.|
T Consensus        90 ~~~iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~--~-~------~~~~~~n~~~~~~g~~t  157 (308)
T 2egu_A           90 KAVLVMPDTMS---LERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREHG--Y-F------MPQQFKNEANPEIHRLT  157 (308)
T ss_dssp             EEEEEEESCSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHC--C-B------CC--------------C
T ss_pred             CEEEEECCCCC---HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHCc--C-C------cCCcCCChhHHHHHHHH
Confidence            99999999887   48999999999999999843 47889888888877652  1 2      256676663  479999


Q ss_pred             HHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++.||++|+.  + .||+||+|+|+||+++|+...|.+.      .+..+|+.
T Consensus       158 ~~~Ei~~q~~--~-~~d~vvvpvG~GG~~~Gi~~~~k~~------~~~~~vig  201 (308)
T 2egu_A          158 TGKEIVEQMG--D-QLDAFVAGVGTGGTITGAGKVLREA------YPNIKIYA  201 (308)
T ss_dssp             HHHHHHHHHT--T-CCCEEEEEGGGTHHHHHHHHHHHHH------CTTCEEEE
T ss_pred             HHHHHHHHcC--C-CCCEEEEeeCCchhHHHHHHHHHHh------CCCCEEEE
Confidence            9999999974  2 4899999999999999996665432      23567774

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=100.00  E-value=4.8e-34  Score=279.91  Aligned_cols=196  Identities=17%  Similarity=0.164  Sum_probs=158.7

Q ss_pred             ccccccccccccccccCceeEEeecCCCC--CchhhHHHHHHHHHHHHHcCCCceEEecC--chHHHHHHHHHHHHcCCc
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDLNF--TGAHKMNNSIAQSLLAKFLKKKRIICETG--AGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~p--tgS~K~R~a~~~~~~a~~~g~~~~v~~~s--sGN~g~a~A~~a~~~G~~  272 (410)
                      ..|||+++++|++.. +++||+|+|++||  +||||+|++.+++..++++|.+++|+ +|  +||||+++|++|+++|++
T Consensus        31 ~~TPL~~~~~l~~~~-g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~~~vv~-~s~tsGN~g~alA~aa~~~G~~  108 (342)
T 4d9b_A           31 APTPLEYLPRLSDYL-GREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLIT-AGAIQSNHVRQTAAVAAKLGLH  108 (342)
T ss_dssp             SCCCEEECHHHHHHH-TSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTCCEEEE-EEETTCHHHHHHHHHHHHHTCE
T ss_pred             CCCceeEhhhhHHhh-CCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCCCEEEE-cCCcccHHHHHHHHHHHHhCCc
Confidence            489999999998777 6899999999999  99999999999999999999887765 64  799999999999999999


Q ss_pred             EEEEEcCCCccc-----hhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEec-CCCCCCCChhHHHhh
Q psy11239        273 SIIYIGENDYKR-----QNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIG-TASGPHPYPTIVRDF  345 (410)
Q Consensus       273 ~~vv~p~~~~~~-----~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g  345 (410)
                      |+||||+..++.     .+.|+++++.+||+|+.++... .++++.+..+.+.++. +..|++. +..  +++   ...|
T Consensus       109 ~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~p~~~~--n~~---~~~G  182 (342)
T 4d9b_A          109 CVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQG-FRPYVIPVGGS--SAL---GAMG  182 (342)
T ss_dssp             EEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTT-CCEEECCGGGC--SHH---HHHH
T ss_pred             EEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcC-CceEEeCCCCC--ChH---HHHH
Confidence            999999865431     1358999999999999997544 6666654444333332 3456632 211  221   3579


Q ss_pred             hhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCc
Q psy11239        346 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISK  401 (410)
Q Consensus       346 ~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~  401 (410)
                      |.|++.||++|+++. ..||+||+|+|||||++|++.++++  +++|||||||++++.
T Consensus       183 ~~t~~~EI~~q~~~~-~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~  239 (342)
T 4d9b_A          183 YVESALEIAQQCEEV-VGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVA  239 (342)
T ss_dssp             HHHHHHHHHHHHTTT-CCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHH
T ss_pred             HHHHHHHHHHHHhcc-CCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHH
Confidence            999999999999622 4799999999999999999999985  489999999999864

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=100.00  E-value=4.2e-34  Score=287.13  Aligned_cols=193  Identities=17%  Similarity=0.167  Sum_probs=156.4

Q ss_pred             ccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||+++++|++.++ +++||+|+|++||+||||+|++.+++..+++.|.   +..|+++|+||||+|+|++|+++|++|
T Consensus       108 ~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g~tVV~aSsGN~G~AlA~aaa~~Gi~~  187 (435)
T 1jbq_A          108 DTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRC  187 (435)
T ss_dssp             CCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCeE
Confidence            799999999887763 2699999999999999999999999998888775   345667999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHHH---HHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKE---AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSII  349 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  349 (410)
                      +||||+..+   ..|+++++.+||+|+.++.. ++++   .+..+.++.++.  +..|+++++.|    +.+...||.|+
T Consensus       188 ~IvmP~~~s---~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~--~~~~~i~q~~n----~~n~~ag~~t~  258 (435)
T 1jbq_A          188 IIVMPEKMS---SEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEI--PNSHILDQYRN----ASNPLAHYDTT  258 (435)
T ss_dssp             EEEECSCCC---HHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHS--TTEECCCTTTC----THHHHHHHHTH
T ss_pred             EEEeCCCCC---HHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhc--CCeEEeCccCC----cccHHHHHHHH
Confidence            999998654   37899999999999998643 2554   355666666664  23455433332    22356799999


Q ss_pred             HHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        350 GYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       350 g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      +.||++|++   ..+|+||+|+|+|||++|++.++++  +++|||||||+++.+.
T Consensus       259 a~EI~eQl~---~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~gs~~~  310 (435)
T 1jbq_A          259 ADEILQQCD---GKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILA  310 (435)
T ss_dssp             HHHHHHHHT---TCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCS
T ss_pred             HHHHHHHcC---CCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecCCchhh
Confidence            999999995   4689999999999999999999986  4889999999999764

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=100.00  E-value=5e-35  Score=289.37  Aligned_cols=186  Identities=25%  Similarity=0.331  Sum_probs=160.0

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHH-cCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      .|||+++++|++.. +.+||+|+|++|||||||||++.+++..+.+ .+.++ |+++|+||||+|+|++|+++|++|++|
T Consensus        60 ~TPL~~l~~l~~~~-g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~~~~-vv~assGN~g~a~A~aa~~~G~~~~iv  137 (366)
T 3iau_A           60 ESPLELAEKLSDRL-GVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKG-VITASAGNHAQGVALAGQRLNCVAKIV  137 (366)
T ss_dssp             CCCEEECHHHHHHH-TSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHHHHC-EEEECSSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcEEhhhhhHhh-CCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCE-EEEeCCCHHHHHHHHHHHHhCCceEEE
Confidence            89999999998887 6899999999999999999999998876543 23334 556999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ  355 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~  355 (410)
                      ||+..+.   .++.+++.+||+|+.++ ++++++.+.+.+.+++.  +.+|+       +||++. ...||+|++.||++
T Consensus       138 ~P~~~~~---~k~~~~~~~GA~V~~v~-~~~~~~~~~a~~~~~~~--~~~~i-------~~~~n~~~i~g~~t~~~Ei~~  204 (366)
T 3iau_A          138 MPTTTPQ---IKIDAVRALGGDVVLYG-KTFDEAQTHALELSEKD--GLKYI-------PPFDDPGVIKGQGTIGTEINR  204 (366)
T ss_dssp             ECTTCCH---HHHHHHHHTTCEEEECC-SSHHHHHHHHHHHHHHH--TCEEC-------CSSSSHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCH---HHHHHHHHCCCeEEEEC-cCHHHHHHHHHHHHHhc--CCEec-------CCCCChHHHHHHHHHHHHHHH
Confidence            9986443   78899999999999986 56999999998888776  45665       666433 57899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      |+    ..||+||+|+|+||+++|++.++++  +++||++|||.+++.+
T Consensus       205 q~----~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~~~~~~l  249 (366)
T 3iau_A          205 QL----KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASM  249 (366)
T ss_dssp             HC----CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEEEEGGGCHH
T ss_pred             hc----CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEEeecCChHH
Confidence            99    3799999999999999999999986  4899999999998753

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=100.00  E-value=4.8e-35  Score=289.80  Aligned_cols=185  Identities=19%  Similarity=0.164  Sum_probs=153.3

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||++...+..+.+.+ ..+|+++||||||+|+|++|+++|++|+
T Consensus        43 ~~~~TPL~~l~~l~~~~-g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~g-~~~vv~aSsGN~g~alA~aa~~~G~~~~  120 (372)
T 1p5j_A           43 LHVKTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQG-CAHFVCSSAGNAGMAAAYAARQLGVPAT  120 (372)
T ss_dssp             SSCCCCEEEEHHHHHHH-TSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTT-CCEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCCceEcHhhHHHh-CCEEEEEEcCCCCCCChHHHHHHHHHHHHHHcC-CCEEEEeCCCHHHHHHHHHHHHcCCcEE
Confidence            56799999999998887 589999999999999999998876666665555 3456667999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.+ +.+       +.+||+|| .+.||.|++.||
T Consensus       121 iv~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~a~~~a~~l~~~~~-~~~-------~v~~~~n~~~~~G~~t~~~Ei  188 (372)
T 1p5j_A          121 IVVPGTTP---ALTIERLKNEGATCKVVG-ELLDEAFELAKALAKNNP-GWV-------YIPPFDDPLIWEGHASIVKEL  188 (372)
T ss_dssp             EEECTTCC---HHHHHHHHHTTCEEEECC-SCHHHHHHHHHHHHHHST-TEE-------ECCSSCCHHHHHHHTHHHHHH
T ss_pred             EEECCCCC---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhcC-CcE-------EeCCCCCHHHHhhHHHHHHHH
Confidence            99999887   589999999999999998 689999988888877631 222       35778777 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|+.   ..||+||+|+|+||+++|+...|.+..     .+.++|+.
T Consensus       189 ~~ql~---~~~d~vvvpvG~GG~~~Gi~~~~k~~~-----~p~~~vig  228 (372)
T 1p5j_A          189 KETLW---EKPGAIALSVGGGGLLCGVVQGLQECG-----WGDVPVIA  228 (372)
T ss_dssp             HHHCS---SCCSEEEEECSSSHHHHHHHHHHHHTT-----CTTCCEEE
T ss_pred             HHHcC---CCCCEEEEecCCchHHHHHHHHHHHhC-----CCCceEEE
Confidence            99964   258999999999999999977765321     13466664

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=100.00  E-value=1.1e-33  Score=275.64  Aligned_cols=191  Identities=21%  Similarity=0.184  Sum_probs=158.4

Q ss_pred             cccccccccccccccCceeEEeecCCCC--CchhhHHHHHHHHHHHHHcCCCceEEe-cCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNF--TGAHKMNNSIAQSLLAKFLKKKRIICE-TGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~p--tgS~K~R~a~~~~~~a~~~g~~~~v~~-~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++|++.. +.+||+|+|++||  +||||+|++.+++..+++.|.+++|+. +|+||||+++|++|+++|++|+
T Consensus        21 ~TPL~~~~~l~~~~-g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~alA~~a~~~G~~~~   99 (325)
T 1j0a_A           21 ETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAI   99 (325)
T ss_dssp             CCCEEECHHHHHHH-TSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEhhhhhhhh-CCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhCCcEE
Confidence            89999999888766 6899999999999  899999999999999999898776653 3999999999999999999999


Q ss_pred             EEEcCCC-ccchhhhHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHHccCCCceEEe-cCCCCCCCChhHHHhhhhh
Q psy11239        275 IYIGEND-YKRQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLI-GTASGPHPYPTIVRDFQSI  348 (410)
Q Consensus       275 vv~p~~~-~~~~~~~~~~~~~~Ga~v~~v~~g~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~t  348 (410)
                      +|||+.. +   +.|+.+++.+||+|+.++....    +++.+.+.++.++.  +..|++ .++.  |+   ....|+.|
T Consensus       100 iv~p~~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~--~~~~~~p~~~~--n~---~~~~g~~t  169 (325)
T 1j0a_A          100 LVLRGKEEL---KGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREG--RKPYVIPPGGA--SP---IGTLGYVR  169 (325)
T ss_dssp             EEEESCCCS---CHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSS--CCEEEECGGGC--SH---HHHTHHHH
T ss_pred             EEECCCCCC---CchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcC--CceEEEcCCCC--CH---HHHHHHHH
Confidence            9999865 4   4889999999999999974432    35666676666554  344443 2222  22   14567899


Q ss_pred             HHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        349 IGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       349 ~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      ++.||++|++   ..||+||+|+|||||++|++.++++.  ++|||||||.+++.+
T Consensus       170 ~~~Ei~~q~~---~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~  222 (325)
T 1j0a_A          170 AVGEIATQSE---VKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEV  222 (325)
T ss_dssp             HHHHHHHHCC---CCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSS
T ss_pred             HHHHHHHhhC---CCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEecCchHH
Confidence            9999999994   57999999999999999999999864  899999999999764

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=100.00  E-value=3.1e-35  Score=299.35  Aligned_cols=174  Identities=25%  Similarity=0.260  Sum_probs=146.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ...+|||+++++|++.+ +.+||+|+|++|||||||||++...+....+.+....|+++||||||+++|++|+++|++|+
T Consensus        28 ~i~~TPL~~l~~Ls~~~-g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~~~gVV~aSsGNhg~avA~aa~~lGi~~~  106 (514)
T 1tdj_A           28 AAQVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKAL  106 (514)
T ss_dssp             TCCCCCEEECHHHHHHT-TSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEE
T ss_pred             ccCCCCcEEchhhHHhh-CCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcCCCEEEEECCcHHHHHHHHHHHHcCCcEE
Confidence            56799999999999887 68999999999999999999876654433322223334446999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++++.|||+|+.++ ++++++.+.+.+++++.  +       ..+.+||++| .+.||+|++.||
T Consensus       107 IvmP~~~p---~~Kv~~~r~~GAeVvlv~-~~~dda~~~a~ela~e~--g-------~~~v~pfdnp~~iaGqgTig~EI  173 (514)
T 1tdj_A          107 IVMPTATA---DIKVDAVRGFGGEVLLHG-ANFDEAKAKAIELSQQQ--G-------FTWVPPFDHPMVIAGQGTLALEL  173 (514)
T ss_dssp             EECCSSCC---HHHHHHHHHHSCEEECCC-SSHHHHHHHHHHHHHHH--C-------CEECCSSCCHHHHHHHHHHHHHH
T ss_pred             EEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--C-------CEeeCCCCCHHHHHHHHHHHHHH
Confidence            99999988   489999999999999987 68999999999888764  2       2347899887 589999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      ++|+.  +  +|+||+|+|+||+++|+...+.+
T Consensus       174 ~eQl~--~--~D~vvvpvGgGGliaGia~~lk~  202 (514)
T 1tdj_A          174 LQQDA--H--LDRVFVPVGGGGLAAGVAVLIKQ  202 (514)
T ss_dssp             HHHCT--T--CCEEEEECSSSHHHHHHHHHHHH
T ss_pred             HHHCC--C--CCEEEEccCcHHHHHHHHHHHHH
Confidence            99964  2  89999999999999999776643

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=100.00  E-value=5.2e-35  Score=289.25  Aligned_cols=183  Identities=23%  Similarity=0.246  Sum_probs=149.3

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+....+.+....|+++||||||+|+|++|+++|++|+
T Consensus        57 ~i~~TPL~~l~~l~~~~-g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~~~~vv~assGN~g~a~A~aa~~~G~~~~  135 (366)
T 3iau_A           57 VAIESPLELAEKLSDRL-GVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVITASAGNHAQGVALAGQRLNCVAK  135 (366)
T ss_dssp             TCCCCCEEECHHHHHHH-TSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHHHHCEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred             hcCCCCcEEhhhhhHhh-CCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHhCCceE
Confidence            45799999999999988 57999999999999999999876554432221112345557999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+.+|+.|||+|+.++ ++++++++.+.+++++.  +.+       +.+||+++ .+.||+|++.||
T Consensus       136 iv~P~~~~---~~k~~~~~~~GA~V~~v~-~~~~~~~~~a~~~~~~~--~~~-------~i~~~~n~~~i~g~~t~~~Ei  202 (366)
T 3iau_A          136 IVMPTTTP---QIKIDAVRALGGDVVLYG-KTFDEAQTHALELSEKD--GLK-------YIPPFDDPGVIKGQGTIGTEI  202 (366)
T ss_dssp             EEECTTCC---HHHHHHHHHTTCEEEECC-SSHHHHHHHHHHHHHHH--TCE-------ECCSSSSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCC---HHHHHHHHHCCCeEEEEC-cCHHHHHHHHHHHHHhc--CCE-------ecCCCCChHHHHHHHHHHHHH
Confidence            99999877   489999999999999998 78999999998887764  222       35777776 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|+    ..||+||+|+|+||+++|+...+...      .+.++++.
T Consensus       203 ~~q~----~~~d~vvvpvG~GG~~~Gi~~~~k~~------~~~~~vig  240 (366)
T 3iau_A          203 NRQL----KDIHAVFIPVGGGGLIAGVATFFKQI------APNTKIIG  240 (366)
T ss_dssp             HHHC----CSEEEEEEECSSSHHHHHHHHHHHHH------STTSEEEE
T ss_pred             HHhc----CCCCEEEEccCchHHHHHHHHHHHHh------CCCCeEEE
Confidence            9996    25899999999999999996665432      23567774

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=100.00  E-value=3.5e-34  Score=280.89  Aligned_cols=186  Identities=16%  Similarity=0.140  Sum_probs=150.8

Q ss_pred             CCCCCcCcccccccc----ccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHH
Q psy11239         12 KGRPTPIYYCKNISN----ILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCC   84 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~----~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~   84 (410)
                      ..++|||+++++|++    .+ +.+||+|+|++|||||||||.+...+..+.+.+.   +.+|+++||||||+|+|++|+
T Consensus        20 ~~g~TPL~~~~~l~~~~~~~~-g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~aa~   98 (343)
T 2pqm_A           20 TIGGTPLVELHGVTEHPRIKK-GTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGA   98 (343)
T ss_dssp             GSSCCCEEECCGGGCSTTSCT-TCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTTCEEEEECSSHHHHHHHHHHH
T ss_pred             hcCCCCeEECCcccccccccc-CcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHH
Confidence            457899999999987    66 6899999999999999999988766666665553   246777799999999999999


Q ss_pred             HcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cc
Q psy11239         85 LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RD  161 (410)
Q Consensus        85 ~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~  161 (410)
                      .+|++|+||||+.++   +.|+++|+.|||+|+.++.. +++++.+.+.+++++.+ ..+|      ..+||+|+.  ..
T Consensus        99 ~~G~~~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~-~~y~------~~~~~~n~~n~~~  168 (343)
T 2pqm_A           99 VFGYRVNIAMPSTMS---VERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENP-GKYF------VANQFGNPDNTAA  168 (343)
T ss_dssp             HHTCCEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHST-TTEE------ECCTTTCHHHHHH
T ss_pred             HcCCCEEEEECCCCC---HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC-CcEE------ECCCCCChhHHHH
Confidence            999999999999887   58999999999999999843 48889998888887652 1112      246676663  47


Q ss_pred             cchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        162 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ||+|++ ||++|+.  + .||+||+|+|+||+++|+...+.+.      .+..+|+.
T Consensus       169 g~~t~~-Ei~~q~~--~-~~d~vvvpvG~GG~~~Gi~~~~k~~------~p~~~vig  215 (343)
T 2pqm_A          169 HHYTAN-EIWEDTD--G-EVDIVVSAVGTSGTVIGVAEKLKEK------KKGIKIIA  215 (343)
T ss_dssp             HHHHHH-HHHHHTT--T-CEEEEEEECSSSHHHHHHHHHHHHH------CTTCEEEE
T ss_pred             HHHHHH-HHHHHcC--C-CCCEEEEecCCchhHHHHHHHHHHc------CCCCEEEE
Confidence            899999 9999964  2 5899999999999999996665432      23567774

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=100.00  E-value=1.1e-34  Score=287.98  Aligned_cols=185  Identities=14%  Similarity=0.096  Sum_probs=150.5

Q ss_pred             CCCcCccccccccccCCceEEEeeCCCCC-CCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         14 RPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        14 ~~TPl~~~~~l~~~~~~~~i~~K~E~~np-tGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ++|||+++++|++.  +.+||+|+|++|| |||||||++..++..+. ++..+.+|+++|+||||+|+|++|+++|++|+
T Consensus        95 ~~TPL~~l~~Ls~~--g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~~a~~~g~~Iv~assGNhG~AlA~aaa~~Gl~~~  172 (389)
T 1wkv_A           95 KPTPLVRSRLQLPN--GVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRAR  172 (389)
T ss_dssp             CSCCEEECCCCCST--TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEccccccC--CCeEEEEEcCCCCCcCChHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHcCCeEE
Confidence            68999999999875  6899999999999 99999998876655422 22334677788999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEE-EEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc--ccccchhHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVY-LVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDFQSIIGY  168 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~-~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~g~~ti~~  168 (410)
                      ||||+.++   +.|..+|+.+||+|+ .++.++++++++++.+.+++.  +.+       +.+||+|+  ...||+|++.
T Consensus       173 ivmp~~~~---~~k~~~~~~~GAeVv~~v~~~~~~da~~~a~~~~~~~--g~~-------~~~p~~N~~~~~~~~~t~g~  240 (389)
T 1wkv_A          173 VYLPGAAE---EFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNE--GFV-------HVNQFYNDANFEAHMRGTAR  240 (389)
T ss_dssp             EEEETTSC---HHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHH--CCE-------ECCTTTCHHHHHHHHHTHHH
T ss_pred             EEECCCCC---HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcc--CcE-------ecCcCCChHHHHHHHHHHHH
Confidence            99999876   478999999999999 676467889998888876553  222       37898655  4789999999


Q ss_pred             HHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        169 EIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       169 EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ||++|+...+..||+||+|+|+||+++|+..+|.+.      .+.++|+.
T Consensus       241 Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~------~p~vrvig  284 (389)
T 1wkv_A          241 EIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSV------DPSIRAVL  284 (389)
T ss_dssp             HHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHH------CTTCEEEE
T ss_pred             HHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHh------CCCCeEEE
Confidence            999998644457999999999999999997777542      13466664

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=100.00  E-value=4.2e-34  Score=275.87  Aligned_cols=181  Identities=23%  Similarity=0.191  Sum_probs=146.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC--CceEEEeCccHHHHHHHHHHHHcCCc
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLE   89 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~--~~~v~~~ssGN~g~a~A~~a~~~G~~   89 (410)
                      ..++|||+++++|+     .+||+|+|++|||||||||.+...+..+.+.+.  .+ |+++|+||||+|+|++|+.+|++
T Consensus        17 ~~~~TPL~~l~~l~-----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~-vv~aSsGN~g~a~A~aa~~~G~~   90 (303)
T 1o58_A           17 LIGSTPIVRLDSID-----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG-IVEPTSGNMGIAIAMIGAKRGHR   90 (303)
T ss_dssp             HSCCCCEEECTTTC-----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTC-EEEECSSHHHHHHHHHHHHHTCC
T ss_pred             ccCCCCeEECccCC-----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCC-EEEECchHHHHHHHHHHHHcCCc
Confidence            35799999998765     579999999999999999988777666666665  34 55679999999999999999999


Q ss_pred             EEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccchhH
Q psy11239         90 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQSII  166 (410)
Q Consensus        90 ~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~ti  166 (410)
                      |+||||+.++   +.|+++|+.|||+|+.++.. +++++++.+.+++++.  + .|      +.+||+|+.  ..||+|+
T Consensus        91 ~~iv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~--~-~~------~~~~~~n~~~~~~g~~t~  158 (303)
T 1o58_A           91 VILTMPETMS---VERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET--G-AH------MLNQFENPYNVYSHQFTT  158 (303)
T ss_dssp             EEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH--C-CB------CCCTTTCHHHHHHHHHTH
T ss_pred             EEEEECCCCC---HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhc--C-eE------eCCCCCCHHHHHHHHHHH
Confidence            9999999877   58999999999999999832 3899998888887664  2 22      256677663  3589999


Q ss_pred             HHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccC-ceeEEe
Q psy11239        167 GYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKG-SKIFLK  219 (410)
Q Consensus       167 ~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~-~~v~~K  219 (410)
                      ++||++|++  + .||+||+|+|+||+++|+...+.+.      .+. .+|+.-
T Consensus       159 ~~Ei~~q~~--~-~~d~vvvpvG~GG~~~Gi~~~~k~~------~p~~~~vigv  203 (303)
T 1o58_A          159 GPEILKQMD--Y-QIDAFVAGVGTGGTISGVGRVLKGF------FGNGVKIVAV  203 (303)
T ss_dssp             HHHHHHHTT--T-CCSEEEEECSSSHHHHHHHHHHHHH------HGGGSEEEEE
T ss_pred             HHHHHHHcC--C-CCCEEEEeeCCcccHHHHHHHHHHh------CCCCCEEEEE
Confidence            999999964  2 4899999999999999997666432      134 677743

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=100.00  E-value=4.7e-34  Score=285.45  Aligned_cols=183  Identities=17%  Similarity=0.164  Sum_probs=147.5

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCC-CCCchhhhHHHHHHHHH--HHh---------------cCCc-eEEEeCc
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLN-FTGAHKMNNSIAQSLLA--KFL---------------KKKR-IICETGA   72 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~n-ptGS~K~R~~~~~~~~~--~~~---------------~~~~-~v~~~ss   72 (410)
                      .+.+|||+++++|++.+|..+||+|+|++| |+||||||++...+..+  ++.               .... +|+++|+
T Consensus        41 ~~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aSs  120 (398)
T 4d9i_A           41 GYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTD  120 (398)
T ss_dssp             TCCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEECS
T ss_pred             CCCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEECC
Confidence            567999999999999884469999999999 99999999876554443  221               2334 6666899


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccC
Q psy11239         73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGP  152 (410)
Q Consensus        73 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (410)
                      ||||+|+|++|+.+|++|+||||+.++   +.|+.+|+.|||+|+.++ ++++++++.+.+++++.  + +|++.+.. -
T Consensus       121 GNhg~a~A~aa~~~G~~~~iv~p~~~~---~~k~~~~~~~GA~Vv~v~-~~~~~a~~~a~~~~~~~--g-~~~v~~~~-~  192 (398)
T 4d9i_A          121 GNHGRGVAWAAQQLGQNAVIYMPKGSA---QERVDAILNLGAECIVTD-MNYDDTVRLTMQHAQQH--G-WEVVQDTA-W  192 (398)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEECTTCC---HHHHHHHHTTTCEEEECS-SCHHHHHHHHHHHHHHH--T-CEECCSSC-B
T ss_pred             CHHHHHHHHHHHHcCCCEEEEEeCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHHc--C-CEEecCcc-c
Confidence            999999999999999999999999887   589999999999999998 68999999998887764  2 33222111 1


Q ss_pred             ccccc--c-ccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239        153 HPYPT--I-VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIY  202 (410)
Q Consensus       153 ~p~~~--~-~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~  202 (410)
                      +||++  + .+.||+|++.||++|+...+..||+||+|+|+||+++|+...+.
T Consensus       193 ~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k  245 (398)
T 4d9i_A          193 EGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLV  245 (398)
T ss_dssp             TTBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHH
T ss_pred             CCcCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHH
Confidence            24652  3 58999999999999986444459999999999999999977664

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=100.00  E-value=1.7e-33  Score=291.33  Aligned_cols=193  Identities=18%  Similarity=0.132  Sum_probs=160.7

Q ss_pred             ccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||+++++|++.++ +++||+|+|++||+||||+|++.+++..+++.|.   +..|+++|+||||+|+|++|+.+|++|
T Consensus        60 ~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~  139 (527)
T 3pc3_A           60 CTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKC  139 (527)
T ss_dssp             CCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHhCCeE
Confidence            699999999987774 3799999999999999999999999999988876   244566999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHH---HHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLK---EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSII  349 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  349 (410)
                      +||||+..+.   .|+.+++.+||+|+.++.+ +++   .++..+.++.++.  +..|++.++.|  |  .+...||.|+
T Consensus       140 ~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~n--~--~n~~~g~~t~  210 (527)
T 3pc3_A          140 IIVMPEKMSN---EKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRET--PNSIVLDQYRN--A--GNPLAHYDGT  210 (527)
T ss_dssp             EEEEETTSCH---HHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHS--SSEECCCTTTC--T--HHHHHHHHTH
T ss_pred             EEEEcCCCCH---HHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhC--CCcEecCCCCC--c--chHHHHHHHH
Confidence            9999986543   7899999999999999753 244   3567777777765  34455443332  2  2357899999


Q ss_pred             HHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcC
Q psy11239        350 GYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKK  402 (410)
Q Consensus       350 g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~  402 (410)
                      |.||++|++   ..||+||+|+|+|||++|++.++++  +++|||||||+++...
T Consensus       211 ~~Ei~~q~~---~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~~~~~  262 (527)
T 3pc3_A          211 AAEILWQLD---NKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILA  262 (527)
T ss_dssp             HHHHHHHTT---TCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETTCCCS
T ss_pred             HHHHHHhcC---CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCcccc
Confidence            999999995   4799999999999999999999985  4889999999999864

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=100.00  E-value=6.6e-34  Score=278.97  Aligned_cols=193  Identities=15%  Similarity=0.014  Sum_probs=149.3

Q ss_pred             CCCCCcCccccccccccCC-ceEEEeeCCCC-C--CCchhhhHHHHHHHHHHHhcCCceEEE--eCccHHHHHHHHHHHH
Q psy11239         12 KGRPTPIYYCKNISNILKG-SKIFLKREDLN-F--TGAHKMNNSIAQSLLAKFLKKKRIICE--TGAGMHGVSTATSCCL   85 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~-~~i~~K~E~~n-p--tGS~K~R~~~~~~~~~~~~~~~~~v~~--~ssGN~g~a~A~~a~~   85 (410)
                      ..++|||+++++|++.+++ .+||+|+|++| |  +||||||.+...+..+.+.+.. .|++  +|+||||+|+|++|+.
T Consensus        12 ~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~~-~vv~~G~ssGN~g~alA~~a~~   90 (341)
T 1f2d_A           12 TFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT-HLVSIGGRQSNQTRMVAALAAK   90 (341)
T ss_dssp             SSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCS-EEEEEEETTCHHHHHHHHHHHH
T ss_pred             CCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCC-EEEEcCCcchHHHHHHHHHHHH
Confidence            5689999999999988734 89999999999 9  9999999887666666666665 4555  6999999999999999


Q ss_pred             cCCcEEEEeccCCc-----c---ccchhHHHHHhcCCEEEEEeCCCH----HHHHHHHHHHHhhcccCCcccccccccCc
Q psy11239         86 LNLESIIYIGENDY-----K---RQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGTASGPH  153 (410)
Q Consensus        86 ~G~~~~iv~p~~~~-----~---~~~~k~~~~~~~GA~v~~v~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (410)
                      +|++|+||||+.++     .   +.+.|+.+|+.|||+|+.++...+    +++.+.+.++.++.+ ..++      .++
T Consensus        91 ~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~-~~~~------i~~  163 (341)
T 1f2d_A           91 LGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGH-KPYP------IPA  163 (341)
T ss_dssp             HTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTC-CEEE------ECG
T ss_pred             hCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCC-cEEE------eCC
Confidence            99999999999876     1   113599999999999999984333    356666666665431 1122      235


Q ss_pred             c-cccc-ccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        154 P-YPTI-VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       154 p-~~~~-~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      | |+|| .+.||.|++.||++|++..+..||+||+|+|||||++|+...|.+.      .+.++|+.
T Consensus       164 ~~~~np~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~------~~~~~vig  224 (341)
T 1f2d_A          164 GCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQY------GRQDDVIA  224 (341)
T ss_dssp             GGTTSTTTTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGG------TCGGGEEE
T ss_pred             CcCCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhc------CCCceEEE
Confidence            5 5555 3689999999999998644456999999999999999997776542      23466773

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=100.00  E-value=4.2e-33  Score=272.92  Aligned_cols=196  Identities=18%  Similarity=0.175  Sum_probs=155.7

Q ss_pred             ccccccccccccccccC-ceeEEeecCCC-C--CchhhHHHHHHHHHHHHHcCCCceEEe-cCchHHHHHHHHHHHHcCC
Q psy11239        197 RPTPIYYCKNISNILKG-SKIFLKREDLN-F--TGAHKMNNSIAQSLLAKFLKKKRIICE-TGAGMHGVSTATSCCLLNL  271 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~-~~v~~K~e~~~-p--tgS~K~R~a~~~~~~a~~~g~~~~v~~-~ssGN~g~a~A~~a~~~G~  271 (410)
                      ..|||+++++|++..++ .+||+|+|++| |  +||||+|++.+++..+.+.|.+++|+. +|+||||+|+|++|+++|+
T Consensus        14 ~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~~~vv~~GassGN~g~alA~~a~~~G~   93 (338)
T 1tzj_A           14 GPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGM   93 (338)
T ss_dssp             SSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHTC
T ss_pred             CCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCC
Confidence            38999999988776524 89999999997 8  999999999999998888888766542 7999999999999999999


Q ss_pred             cEEEEEcCCCccc-----hhhhHHHHHHCCCEEEEEeCCCHHH-----HHHHHHHHHHccCCCceEEe-cC-CCCCCCCh
Q psy11239        272 ESIIYIGENDYKR-----QNINVKKIKLLGGTVYLVQYGNLKE-----AMNEAIKDWSNNILNSHYLI-GT-ASGPHPYP  339 (410)
Q Consensus       272 ~~~vv~p~~~~~~-----~~~~~~~~~~~Ga~v~~v~~g~~~~-----~~~~a~~~~~~~~~~~~~~~-~~-~~~~~~~~  339 (410)
                      +|++|||+..++.     ++.|+++++.+||+|+.++ +++++     +.+.+.++.++.  +..|++ .+ +.  ||+ 
T Consensus        94 ~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~-~~~~~~~~~~~~~~a~~l~~~~--~~~~~~p~~~~~--n~~-  167 (338)
T 1tzj_A           94 KCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVP-DGFDIGFRRSWEDALESVRAAG--GKPYAIPAGCSD--HPL-  167 (338)
T ss_dssp             EEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECC-C-------CHHHHHHHHHHHTT--CCEEECCGGGTS--STT-
T ss_pred             ceEEEecCCCCccccccccCccHHHHHhCCCEEEEeC-CcchhhHHHHHHHHHHHHHhcC--CceEEeCCCcCC--Ccc-
Confidence            9999999865431     1248999999999999986 33433     345555555544  344554 33 44  444 


Q ss_pred             hHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCc
Q psy11239        340 TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISK  401 (410)
Q Consensus       340 ~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~  401 (410)
                        ...|+.|++.||++|+++.+..||+||+|+|||||++|++.++++   ++ |||+|||++++.
T Consensus       168 --~~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~  229 (338)
T 1tzj_A          168 --GGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPA  229 (338)
T ss_dssp             --TTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHH
T ss_pred             --cHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchH
Confidence              357899999999999974445799999999999999999999985   36 999999999864

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=100.00  E-value=1.5e-33  Score=283.05  Aligned_cols=188  Identities=19%  Similarity=0.130  Sum_probs=146.5

Q ss_pred             CCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ..++|||+++++|++.+| +.+||+|+|++|||||||||.+...+..+.+.+.   +.+|+++|+||||+|+|++|+++|
T Consensus       105 ~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g~tVV~aSsGN~G~AlA~aaa~~G  184 (435)
T 1jbq_A          105 KIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRG  184 (435)
T ss_dssp             GSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             hCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcC
Confidence            567999999999998875 3699999999999999999988766666666653   357777899999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHH---HHHHHHHHHhhcccCCcccccccccCcccccc--ccc
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKE---AMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRD  161 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~  161 (410)
                      ++|+||||+.++   +.|+++|+.|||+|+.++.. ++++   .++.+.+++++.+  ..|      ..+||+++  ...
T Consensus       185 i~~~IvmP~~~s---~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~--~~~------~i~q~~n~~n~~a  253 (435)
T 1jbq_A          185 YRCIIVMPEKMS---SEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIP--NSH------ILDQYRNASNPLA  253 (435)
T ss_dssp             CEEEEEECSCCC---HHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHST--TEE------CCCTTTCTHHHHH
T ss_pred             CeEEEEeCCCCC---HHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcC--CeE------EeCccCCcccHHH
Confidence            999999999887   58999999999999999743 4554   3566666665531  122      24556554  257


Q ss_pred             cchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        162 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      ||.|++.||++|++   ..+|+||+|+|+||+++|+...|.+      ..+.++|+.-
T Consensus       254 g~~t~a~EI~eQl~---~~~D~vVvpvGtGGtlaGi~~~lk~------~~p~vrVigV  302 (435)
T 1jbq_A          254 HYDTTADEILQQCD---GKLDMLVASVGTGGTITGIARKLKE------KCPGCRIIGV  302 (435)
T ss_dssp             HHHTHHHHHHHHHT---TCCCEEEEECSSSHHHHHHHHHHHH------HCTTCEEEEE
T ss_pred             HHHHHHHHHHHHcC---CCCCEEEEecCCcHhHHHHHHHHHH------hCCCCEEEEE
Confidence            89999999999964   2589999999999999999766643      2345677743

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1e-33  Score=279.38  Aligned_cols=174  Identities=18%  Similarity=0.129  Sum_probs=145.6

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.. +|+++||||||+|+|++|+++|++|+
T Consensus        35 ~~g~TPL~~~~~l~~~~-g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~~g~~-~vv~aSsGN~g~alA~~a~~~G~~~~  112 (360)
T 2d1f_A           35 LEGGTPLIAATNLSKQT-GCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQR-AVLCASTGNTSASAAAYAARAGITCA  112 (360)
T ss_dssp             CCCCCCEEECHHHHHHH-SSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCS-EEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred             ccCCCCCeechhhHHHh-CCeEEEEECCCCCCcCHHHHHHHHHHHHHHHCCCC-EEEEeCCcHHHHHHHHHHHHcCCcEE
Confidence            34689999999999887 68999999999999999999987776667666654 45556999999999999999999999


Q ss_pred             EEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239         92 IYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE  169 (410)
Q Consensus        92 iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E  169 (410)
                      ||||+. .+   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.  +..|++      ++ +|+ .+.||.|++.|
T Consensus       113 i~~p~~~~~---~~k~~~~~~~GA~v~~v~-~~~~~~~~~a~~l~~~~--~~~~~i------~~-~n~~~~~g~~t~~~E  179 (360)
T 2d1f_A          113 VLIPQGKIA---MGKLAQAVMHGAKIIQID-GNFDDCLELARKMAADF--PTISLV------NS-VNPVRIEGQKTAAFE  179 (360)
T ss_dssp             EEECSSCCC---HHHHHHHHHTTCEEEEBS-SCHHHHHHHHHHHHHHC--TTEEEC------ST-TCHHHHHHHTHHHHH
T ss_pred             EEEcCCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCeEEc------CC-CChhhhhhHHHHHHH
Confidence            999997 66   589999999999999998 68999998888887664  223333      33 233 46899999999


Q ss_pred             HHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      |++|+.   ..||+||+|+|+||+++|+...|.+
T Consensus       180 i~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~  210 (360)
T 2d1f_A          180 IVDVLG---TAPDVHALPVGNAGNITAYWKGYTE  210 (360)
T ss_dssp             HHHHHS---SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred             HHHHcC---CCCCEEEEeCCchHHHHHHHHHHHH
Confidence            999974   3589999999999999999777654

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=100.00  E-value=1.4e-33  Score=277.60  Aligned_cols=173  Identities=17%  Similarity=0.115  Sum_probs=145.2

Q ss_pred             CCCCCcCccc--cccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCc
Q psy11239         12 KGRPTPIYYC--KNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLE   89 (410)
Q Consensus        12 ~~~~TPl~~~--~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~   89 (410)
                      ..++|||+++  ++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.. +|+++||||||+|+|++|+.+|++
T Consensus        25 ~~g~TPL~~~~~~~l~~~~-g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~~g~~-~vv~~SsGN~g~alA~~a~~~G~~  102 (351)
T 3aey_A           25 LEGSTPLIPLKGPEEARKK-GIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQ-AVACASTGNTAASAAAYAARAGIL  102 (351)
T ss_dssp             CCCCCCEEECCCCHHHHTT-TCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCS-EEEESCSSHHHHHHHHHHHHHTSE
T ss_pred             CCCCCCeeecCchhhHHHh-CCeEEEEecCCCCcccHHHHHHHHHHHHHHhcCCC-EEEEeCCCHHHHHHHHHHHHcCCC
Confidence            4568999999  9998877 68999999999999999999987776666666654 555579999999999999999999


Q ss_pred             EEEEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHH
Q psy11239         90 SIIYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIG  167 (410)
Q Consensus        90 ~~iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~  167 (410)
                      |+||||+. ++   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.  + .+++      ++ +|| .+.||.|++
T Consensus       103 ~~iv~p~~~~~---~~k~~~~~~~GA~V~~v~-~~~~~~~~~a~~l~~~~--~-~~~~------~~-~n~~~~~g~~t~~  168 (351)
T 3aey_A          103 AIVVLPAGYVA---LGKVAQSLVHGARIVQVE-GNFDDALRLTQKLTEAF--P-VALV------NS-VNPHRLEGQKTLA  168 (351)
T ss_dssp             EEEEEETTCSC---HHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHHS--S-EEEC------ST-TCHHHHHHHHHHH
T ss_pred             EEEEECCCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-cEec------CC-CCccceeeeeeHH
Confidence            99999997 76   589999999999999998 68999988888887654  2 3322      33 333 468999999


Q ss_pred             HHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      .||++|+.   ..||+||+|+|+||+++|+...+.+
T Consensus       169 ~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~  201 (351)
T 3aey_A          169 FEVVDELG---DAPHYHALPVGNAGNITAHWMGYKA  201 (351)
T ss_dssp             HHHHHHHS---SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred             HHHHHHcC---CCCCEEEEecCchHHHHHHHHHHHH
Confidence            99999974   3589999999999999999777654

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=100.00  E-value=1.3e-33  Score=278.00  Aligned_cols=174  Identities=22%  Similarity=0.226  Sum_probs=144.9

Q ss_pred             CCCCCcCccccccccccCCce--EEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCc
Q psy11239         12 KGRPTPIYYCKNISNILKGSK--IFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLE   89 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~--i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~   89 (410)
                      ..++|||+++++|++.+ +.+  ||+|+|++|||||||||.+...+..+.+.+.. +|+++||||||+|+|++|+++|++
T Consensus        27 ~~g~TPL~~~~~l~~~~-g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~~g~~-~vv~~SsGN~g~alA~~a~~~G~~  104 (352)
T 2zsj_A           27 YEGNTPLIEADNLARAI-GFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGKR-AVICASTGNTSASAAAYAARAGLR  104 (352)
T ss_dssp             CCCCCCEEECHHHHHHH-TCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCC-EEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             ccCCCCCeehHHHHHHh-CCCceEEEEECCCCCCccHHHHHHHHHHHHHHhcCCC-EEEEeCCchHHHHHHHHHHhcCCc
Confidence            45689999999998877 567  99999999999999999987776667666654 455579999999999999999999


Q ss_pred             EEEEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHH
Q psy11239         90 SIIYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY  168 (410)
Q Consensus        90 ~~iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~  168 (410)
                      |+||||+. .+   +.|+++|+.|||+|+.++ ++++++.+.+.+++++.  + .+++++   .||+   .+.||.|++.
T Consensus       105 ~~i~~p~~~~~---~~k~~~~~~~GA~v~~v~-~~~~~~~~~a~~l~~~~--~-~~~~~~---~n~~---~~~g~~t~~~  171 (352)
T 2zsj_A          105 AYVLLPKGAVA---IGKLSQAMIYGAKVLAIQ-GTFDDALNIVRKIGENF--P-VEIVNS---VNPY---RIEGQKTAAF  171 (352)
T ss_dssp             EEEEEEGGGCC---HHHHHHHHHTTCEEEEES-SCHHHHHHHHHHHHHHS--S-EEECST---TCTH---HHHHHTHHHH
T ss_pred             EEEEECCCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHHc--C-cEECCC---CCcc---hhhhHhHHHH
Confidence            99999997 76   589999999999999998 68999988888887654  2 333321   2333   4689999999


Q ss_pred             HHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        169 EIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       169 EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      ||++|+.   ..||+||+|+|+||+++|+...|.+
T Consensus       172 Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~k~  203 (352)
T 2zsj_A          172 EICDTLG---EAPDYHFIPVGNAGNITAYWKGFKI  203 (352)
T ss_dssp             HHHHHHS---SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred             HHHHHcC---CCCCEEEEeCCCcHHHHHHHHHHHH
Confidence            9999974   3589999999999999999777654

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=100.00  E-value=2.6e-33  Score=283.08  Aligned_cols=179  Identities=15%  Similarity=0.108  Sum_probs=146.4

Q ss_pred             CCCCcCccccccc----cccC---CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcCC---------------
Q psy11239         13 GRPTPIYYCKNIS----NILK---GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKKK---------------   64 (410)
Q Consensus        13 ~~~TPl~~~~~l~----~~~~---~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~~---------------   64 (410)
                      .++|||+++++|+    +.+|   +.+||+|+|++|| |||||||++...+..     +++.+..               
T Consensus        76 ~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r  155 (442)
T 3ss7_X           76 IIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFK  155 (442)
T ss_dssp             CCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHH
T ss_pred             CCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhh
Confidence            3699999999987    6664   4899999999999 999999988766542     4555531               


Q ss_pred             -----ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcc
Q psy11239         65 -----RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI  139 (410)
Q Consensus        65 -----~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~  139 (410)
                           .+|+++|+||||+|+|++|+++|++|+||||++++   +.|+.+|+.|||+|+.++ ++++++++.+.+++++.+
T Consensus       156 ~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~---~~k~~~~r~~GA~Vv~v~-~~~~~a~~~a~~~a~~~~  231 (442)
T 3ss7_X          156 QFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADAR---AWKKAKLRSHGVTVVEYE-QDYGVAVEEGRKAAQSDP  231 (442)
T ss_dssp             HHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSC---HHHHHHHHHTTCEEEEES-SCHHHHHHHHHHHHHTCT
T ss_pred             hhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhCC
Confidence                 26777899999999999999999999999999987   489999999999999998 689999999999877642


Q ss_pred             cCCcccccccccCcccccc-ccccchhHHHHHHHhhhhc-----CCCccEEEEecCCCCceeeccccccc
Q psy11239        140 LNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQLNFN-----FYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       140 ~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~q~~~~-----~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                        ..|++      +|++++ .+.||+|++.||++|+...     +..||+||+|+|+||+++|+..+|.+
T Consensus       232 --~~~~i------~~~n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~  293 (442)
T 3ss7_X          232 --NCFFI------DDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKL  293 (442)
T ss_dssp             --TEEEC------CTTTCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHH
T ss_pred             --CceeC------CCCChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHHHHH
Confidence              23322      334333 5799999999999997532     23588999999999999999777754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=100.00  E-value=3.5e-33  Score=288.86  Aligned_cols=177  Identities=20%  Similarity=0.122  Sum_probs=146.0

Q ss_pred             CCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ..++|||+++++|++.+| +++||+|+|++|||||||||++...+..+.+.+.   +.+|+++|+||||+|+|++|+.+|
T Consensus        57 ~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G  136 (527)
T 3pc3_A           57 VIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKG  136 (527)
T ss_dssp             GSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             hcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHhC
Confidence            467899999999998875 3799999999999999999988777666766664   356777899999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHH---HHHHHHHHHHhhcccCCcccccccccCcccccc--ccc
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLK---EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRD  161 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~  161 (410)
                      ++|+||||+.++   +.|+.+|+.|||+|+.++.. +++   .+++.+.+++++.+ + .|      ..+||+||  ...
T Consensus       137 ~~~~iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~~------~~~~~~n~~n~~~  205 (527)
T 3pc3_A          137 YKCIIVMPEKMS---NEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETP-N-SI------VLDQYRNAGNPLA  205 (527)
T ss_dssp             CEEEEEEETTSC---HHHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHSS-S-EE------CCCTTTCTHHHHH
T ss_pred             CeEEEEEcCCCC---HHHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhCC-C-cE------ecCCCCCcchHHH
Confidence            999999999887   58999999999999999853 354   36677777776642 1 22      24667665  368


Q ss_pred             cchhHHHHHHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239        162 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIY  202 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~  202 (410)
                      ||.|++.||++|+.   ..||+||+|+|+||+++|+...+.
T Consensus       206 g~~t~~~Ei~~q~~---~~~d~vv~~vG~GG~~~G~~~~~k  243 (527)
T 3pc3_A          206 HYDGTAAEILWQLD---NKVDMIVVSAGTAGTISGIGRKIK  243 (527)
T ss_dssp             HHHTHHHHHHHHTT---TCCSEEEEECSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC---CCCCEEEEecCccHHHHHHHHHHH
Confidence            99999999999964   258999999999999999977664

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=100.00  E-value=4.1e-33  Score=273.26  Aligned_cols=194  Identities=16%  Similarity=0.119  Sum_probs=145.8

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCC--CCchhhhHHHHHHHHHHHhcCCceEEEe-CccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNF--TGAHKMNNSIAQSLLAKFLKKKRIICET-GAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~np--tGS~K~R~~~~~~~~~~~~~~~~~v~~~-ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++|++.+ +.+||+|+|++||  +||||||.+...+..+++.+.+.+|+.+ |+||||+|+|++|+++|+
T Consensus        29 ~~~~TPL~~~~~l~~~~-g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~alA~aa~~~G~  107 (342)
T 4d9b_A           29 IGAPTPLEYLPRLSDYL-GREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGL  107 (342)
T ss_dssp             SCSCCCEEECHHHHHHH-TSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHTC
T ss_pred             cCCCCceeEhhhhHHhh-CCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHHHHHHhCC
Confidence            56899999999999887 6899999999999  9999999877666666777765565543 369999999999999999


Q ss_pred             cEEEEeccCCccc-----cchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCcccccccccc
Q psy11239         89 ESIIYIGENDYKR-----QNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDF  162 (410)
Q Consensus        89 ~~~iv~p~~~~~~-----~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g  162 (410)
                      +|+||||+.++..     .++|+.+++.|||+|+.++.. +.++++++..+.+.+.....++++.+  +.||+   ...|
T Consensus       108 ~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~--~~n~~---~~~G  182 (342)
T 4d9b_A          108 HCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVG--GSSAL---GAMG  182 (342)
T ss_dssp             EEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTTCCEEECCGG--GCSHH---HHHH
T ss_pred             cEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcCCceEEeCCC--CCChH---HHHH
Confidence            9999999987742     135999999999999999844 35666654443333331222222221  12332   2579


Q ss_pred             chhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        163 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       163 ~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |.|++.||++|++.. ..||+||+|+|||||++|+...|...      .+.++|+.
T Consensus       183 ~~t~~~EI~~q~~~~-~~~d~vv~~vGtGGt~aGi~~~~k~~------~~~~~vig  231 (342)
T 4d9b_A          183 YVESALEIAQQCEEV-VGLSSVVVASGSAGTHAGLAVGLEHL------MPDVELIG  231 (342)
T ss_dssp             HHHHHHHHHHHHTTT-CCCCEEEEEESSSHHHHHHHHHHHHH------CTTSEEEE
T ss_pred             HHHHHHHHHHHHhcc-CCCCEEEEeCCCCHHHHHHHHHHHhh------CCCCeEEE
Confidence            999999999997532 36899999999999999996666432      23577774

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=100.00  E-value=5.3e-33  Score=270.78  Aligned_cols=187  Identities=19%  Similarity=0.091  Sum_probs=145.9

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCC--CCchhhhHHHHHHHHHHHhcCCceEEE-eCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNF--TGAHKMNNSIAQSLLAKFLKKKRIICE-TGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~np--tGS~K~R~~~~~~~~~~~~~~~~~v~~-~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++|++.+ +.+||+|+|++||  +||||||.+...+..+.+.+..++|+. +|+||||+|+|++|+.+|+
T Consensus        18 ~~~~TPL~~~~~l~~~~-g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~alA~~a~~~G~   96 (325)
T 1j0a_A           18 IPWETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGL   96 (325)
T ss_dssp             CCSCCCEEECHHHHHHH-TSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             ccCCCCceEhhhhhhhh-CCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhCC
Confidence            56799999999998877 6899999999999  899999987766666666776545543 3889999999999999999


Q ss_pred             cEEEEeccCC-ccccchhHHHHHhcCCEEEEEeCCCH----HHHHHHHHHHHhhcccCCcccccccccCcccccc-cccc
Q psy11239         89 ESIIYIGEND-YKRQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDF  162 (410)
Q Consensus        89 ~~~iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g  162 (410)
                      +|+||||+.+ +   +.|+++++.|||+|+.++....    .++.+.+.+++++. ...+++      +++|+|+ ...|
T Consensus        97 ~~~iv~p~~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~------p~~~~n~~~~~g  166 (325)
T 1j0a_A           97 DAILVLRGKEEL---KGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREG-RKPYVI------PPGGASPIGTLG  166 (325)
T ss_dssp             EEEEEEESCCCS---CHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSS-CCEEEE------CGGGCSHHHHTH
T ss_pred             cEEEEECCCCCC---CchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcC-CceEEE------cCCCCCHHHHHH
Confidence            9999999988 6   5899999999999999984322    25666666666543 111222      2333444 3578


Q ss_pred             chhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        163 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       163 ~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |.|++.||++|++   ..||+||+|+|||||++|+...|.+.      .+.++|+.
T Consensus       167 ~~t~~~Ei~~q~~---~~~d~vv~~vGtGGt~~Gi~~~lk~~------~~~~~vig  213 (325)
T 1j0a_A          167 YVRAVGEIATQSE---VKFDSIVVAAGSGGTLAGLSLGLSIL------NEDIRPVG  213 (325)
T ss_dssp             HHHHHHHHHHHCC---CCCSEEEEEESSSHHHHHHHHHHHHT------TCCCEEEE
T ss_pred             HHHHHHHHHHhhC---CCCCEEEEeCCchHhHHHHHHHHHhc------CCCceEEE
Confidence            8999999999963   36899999999999999997766432      23567774

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=99.98  E-value=5.8e-33  Score=271.93  Aligned_cols=184  Identities=16%  Similarity=0.048  Sum_probs=139.5

Q ss_pred             CCCCCcCccccccccccCC-ceEEEeeCCCC-C--CCchhhhHHHHHHHHHHHhcCCceEEE-eCccHHHHHHHHHHHHc
Q psy11239         12 KGRPTPIYYCKNISNILKG-SKIFLKREDLN-F--TGAHKMNNSIAQSLLAKFLKKKRIICE-TGAGMHGVSTATSCCLL   86 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~-~~i~~K~E~~n-p--tGS~K~R~~~~~~~~~~~~~~~~~v~~-~ssGN~g~a~A~~a~~~   86 (410)
                      ..++|||+++++|++.+++ .+||+|+|++| |  +||||||.+...+..+.+.+..++|+. +|+||||+|+|++|+.+
T Consensus        12 ~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~~~vv~~GassGN~g~alA~~a~~~   91 (338)
T 1tzj_A           12 TFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHL   91 (338)
T ss_dssp             SSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHH
T ss_pred             CCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHh
Confidence            6679999999999887634 89999999997 8  999999987666555666666544442 69999999999999999


Q ss_pred             CCcEEEEeccCCccc-----cchhHHHHHhcCCEEEEEeCCCHHH-----HHHHHHHHHhhcccCCcccccccccCcc-c
Q psy11239         87 NLESIIYIGENDYKR-----QNINVKKIKLLGGTVYLVQYGNLKE-----AMNEAIKDWSNNILNSHYLIGTASGPHP-Y  155 (410)
Q Consensus        87 G~~~~iv~p~~~~~~-----~~~k~~~~~~~GA~v~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  155 (410)
                      |++|+||||+.++..     .+.|+++|+.|||+|+.++ +++++     +.+.+.++.++. ...++++      ++ |
T Consensus        92 G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~-~~~~~~~~~~~~~~a~~l~~~~-~~~~~~p------~~~~  163 (338)
T 1tzj_A           92 GMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVP-DGFDIGFRRSWEDALESVRAAG-GKPYAIP------AGCS  163 (338)
T ss_dssp             TCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECC-C-------CHHHHHHHHHHHTT-CCEEECC------GGGT
T ss_pred             CCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeC-CcchhhHHHHHHHHHHHHHhcC-CceEEeC------CCcC
Confidence            999999999987631     1249999999999999997 55443     355555655543 1112222      22 4


Q ss_pred             ccc-ccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        156 PTI-VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       156 ~~~-~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      +|| .+.||.|++.||++|+...+..||+||+|+|||||++|+...|.+
T Consensus       164 ~n~~~~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~  212 (338)
T 1tzj_A          164 DHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAA  212 (338)
T ss_dssp             SSTTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHh
Confidence            444 468999999999999753334689999999999999999777654

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*

Probab=99.97  E-value=4e-31  Score=269.74  Aligned_cols=191  Identities=13%  Similarity=0.175  Sum_probs=156.6

Q ss_pred             ccccccccccccc-ccCceeEEeecCCCCCchhhHHHHHHHHHHHHH---cCC-CceEEecCchHHHHHHHHHHHHcCCc
Q psy11239        198 PTPIYYCKNISNI-LKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF---LKK-KRIICETGAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       198 ~tpl~~~~~L~~~-~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~---~g~-~~~v~~~ssGN~g~a~A~~a~~~G~~  272 (410)
                      .|||+++++|++. ++..+||+|+|+.|||||||||++...+..++.   .+. ...|+++|+||||+|+|++|+++|++
T Consensus       130 ~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~~g~~~Vv~aSsGNtG~AlA~~a~~~Gi~  209 (486)
T 1e5x_A          130 NSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIP  209 (486)
T ss_dssp             CCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHTCC
T ss_pred             CCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEcCCCHHHHHHHHHHHHcCCe
Confidence            6999999998877 643589999999999999999988776654443   332 33455699999999999999999999


Q ss_pred             EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      |+||||++..+  ..++.+|+.+||+|+.++ ++++++.+.+.+..++.   .+|++      |+|+.....||.|++.|
T Consensus       210 ~~I~~P~~~~s--~~k~~~~~~~GA~vi~v~-g~~dd~~~~a~~l~~~~---~~~~v------ns~N~~~i~gq~t~~~E  277 (486)
T 1e5x_A          210 SIVFLPANKIS--MAQLVQPIANGAFVLSID-TDFDGCMKLIREITAEL---PIYLA------NSLNSLRLEGQKTAAIE  277 (486)
T ss_dssp             EEEEEEGGGCC--HHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHHS---CEEEG------GGSHHHHHHHHTHHHHH
T ss_pred             EEEEECCCCCC--HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHhcC---CEEEe------CCCCHHHHHHHHHHHHH
Confidence            99999985233  377889999999999996 66999998888887664   35554      44433367899999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--------CCCeEEEEccCCCCcC
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--------SNFKLVAIESGGISKK  402 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--------~~~~vigVe~~g~~~~  402 (410)
                      |++|+.  +..||+||+|+|+||+++|++.+|++        +.+|||+|||++++.+
T Consensus       278 i~~ql~--~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l  333 (486)
T 1e5x_A          278 ILQQFD--WQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPL  333 (486)
T ss_dssp             HHHHTT--SCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTH
T ss_pred             HHHHcC--CCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchH
Confidence            999995  34699999999999999999999874        4689999999988654

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*

Probab=99.97  E-value=1.7e-31  Score=272.49  Aligned_cols=191  Identities=13%  Similarity=0.158  Sum_probs=148.8

Q ss_pred             CCCCcCccccccccc-cCCceEEEeeCCCCCCCchhhhHHHHHHHHHHH---hcC-CceEEEeCccHHHHHHHHHHHHcC
Q psy11239         13 GRPTPIYYCKNISNI-LKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF---LKK-KRIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~-~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~---~~~-~~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ..+|||+++++|++. +|..+||+|+|++|||||||||++...+.+...   .++ ..+|+++||||||+|+|++|+++|
T Consensus       128 ~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~~g~~~Vv~aSsGNtG~AlA~~a~~~G  207 (486)
T 1e5x_A          128 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG  207 (486)
T ss_dssp             CCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHT
T ss_pred             CCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEcCCCHHHHHHHHHHHHcC
Confidence            447999999999988 755689999999999999999976443333222   333 346666899999999999999999


Q ss_pred             CcEEEEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhH
Q psy11239         88 LESIIYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSII  166 (410)
Q Consensus        88 ~~~~iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti  166 (410)
                      ++|+||||+. ++   +.|+.+|+.+||+|+.++ ++++++.+.+.+++++.   ..|+      .|+|+...+.||+|+
T Consensus       208 i~~~I~~P~~~~s---~~k~~~~~~~GA~vi~v~-g~~dd~~~~a~~l~~~~---~~~~------vns~N~~~i~gq~t~  274 (486)
T 1e5x_A          208 IPSIVFLPANKIS---MAQLVQPIANGAFVLSID-TDFDGCMKLIREITAEL---PIYL------ANSLNSLRLEGQKTA  274 (486)
T ss_dssp             CCEEEEEEGGGCC---HHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHHS---CEEE------GGGSHHHHHHHHTHH
T ss_pred             CeEEEEECCCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHhcC---CEEE------eCCCCHHHHHHHHHH
Confidence            9999999996 76   489999999999999999 78999999888887653   2332      344522257899999


Q ss_pred             HHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        167 GYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       167 ~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++||++|+.  +..||+||+|+|+||+++|+...|.+...+.-..+..+++.
T Consensus       275 ~~Ei~~ql~--~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~  324 (486)
T 1e5x_A          275 AIEILQQFD--WQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVC  324 (486)
T ss_dssp             HHHHHHHTT--SCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEE
T ss_pred             HHHHHHHcC--CCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEE
Confidence            999999964  33589999999999999999888765433221002356664

>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1

Probab=99.95  E-value=7.2e-29  Score=249.75  Aligned_cols=190  Identities=14%  Similarity=0.019  Sum_probs=139.8

Q ss_pred             hhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCC-CCCCchhhhHHHHHH---HHHHHhcCCceEEEeCccHHHHH
Q psy11239          3 WFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQS---LLAKFLKKKRIICETGAGMHGVS   78 (410)
Q Consensus         3 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~-nptGS~K~R~~~~~~---~~~~~~~~~~~v~~~ssGN~g~a   78 (410)
                      .++++++....++|||+++++        +||+ +|++ |||||||||++....   ..+ +.++..+|+++||||||+|
T Consensus        71 ~l~~~~~~~~~~~TPL~~l~~--------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~~~~~Iv~atsGNtG~A  140 (428)
T 1vb3_A           71 ILEERVRAAFAFPAPVANVES--------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGDKPVTILTATSGDTGAA  140 (428)
T ss_dssp             HHHHHHHHHCCSCCCEEEEET--------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTTCCEEEEEECSSSHHHH
T ss_pred             HHHHHHHHHhCCCCCeEEecC--------CeEE-eeccCCCcccHHHHHHHHHHHHHHHH-HhcCCCEEEecCCchHHHH
Confidence            444555444568899999853        6999 7777 699999999875442   223 2344557777899999999


Q ss_pred             HH-HHHHHcCCcEEEEeccC-CccccchhHHHHHhcCCEE--EEEeCCCHHHHHHHHHHHHhhcc---cCCccccccccc
Q psy11239         79 TA-TSCCLLNLESIIYIGEN-DYKRQNINVKKIKLLGGTV--YLVQYGNLKEAMNEAIKDWSNNI---LNSHYLIGTASG  151 (410)
Q Consensus        79 ~A-~~a~~~G~~~~iv~p~~-~~~~~~~k~~~~~~~GA~v--~~v~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  151 (410)
                      +| ++|+++|++|+||||+. ++   +.|+.+|+.+||+|  +.++ ++++++.+.+.+.+.+..   ...++      .
T Consensus       141 ~A~~~a~~~G~~~~I~~P~~~~s---~~k~~~m~~~GA~V~~v~v~-g~~d~~~~~~~~~~~d~~~~~~~~~~------~  210 (428)
T 1vb3_A          141 VAHAFYGLPNVKVVILYPRGKIS---PLQEKLFCTLGGNIETVAID-GDFDACQALVKQAFDDEELKVALGLN------S  210 (428)
T ss_dssp             HHHHTTTCTTEEEEEEEETTCSC---HHHHHHHHSCCTTEEEEEEE-SCHHHHHHHHHHGGGCHHHHHHHTEE------C
T ss_pred             HHHHHhhhcCCeEEEEECCCCCC---HHHHHHHHhcCCeEEEEEeC-CCHHHHHHHHHHHHhchhhhhhcCee------e
Confidence            99 59999999999999994 76   47899999999999  7777 789999888777654210   00112      2


Q ss_pred             CccccccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        152 PHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       152 ~~p~~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      .|+++...+.||.|+++||++|+...+..||+||+|+|+||+++|+...+..      ..+..+|+.
T Consensus       211 ~n~~n~~~~~gq~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~------g~p~~kii~  271 (428)
T 1vb3_A          211 ANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSL------GLPVKRFIA  271 (428)
T ss_dssp             CSTTSHHHHHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHT------TCCCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHc------CCCCCeEEe
Confidence            3444322468999999999999753334699999999999999999766431      223457776

>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1

Probab=99.94  E-value=4.3e-27  Score=236.80  Aligned_cols=184  Identities=14%  Similarity=0.042  Sum_probs=140.9

Q ss_pred             ccccccccccccccccCceeEEeecCC-CCCchhhHHHHHHHH---HHHHHcCCCceEEecCchHHHHHHH-HHHHHcCC
Q psy11239        197 RPTPIYYCKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQS---LLAKFLKKKRIICETGAGMHGVSTA-TSCCLLNL  271 (410)
Q Consensus       197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~-~ptgS~K~R~a~~~~---~~a~~~g~~~~v~~~ssGN~g~a~A-~~a~~~G~  271 (410)
                      ..|||+++++        ++|+ +|++ |||||||||++..+.   ..+ +.+....|+++|+||||+|+| ++|+++|+
T Consensus        82 ~~TPL~~l~~--------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~~~~~Iv~atsGNtG~A~A~~~a~~~G~  151 (428)
T 1vb3_A           82 FPAPVANVES--------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGDKPVTILTATSGDTGAAVAHAFYGLPNV  151 (428)
T ss_dssp             SCCCEEEEET--------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTTCCEEEEEECSSSHHHHHHHHTTTCTTE
T ss_pred             CCCCeEEecC--------CeEE-eeccCCCcccHHHHHHHHHHHHHHHH-HhcCCCEEEecCCchHHHHHHHHHhhhcCC
Confidence            4699987542        7999 7877 699999999987764   334 335556677799999999999 59999999


Q ss_pred             cEEEEEcCCCccchhhhHHHHHHCCCEE--EEEeCCCHHHHHHHHHHHHHcc---CCCceEEecCCCCCCCChhHHHhhh
Q psy11239        272 ESIIYIGENDYKRQNINVKKIKLLGGTV--YLVQYGNLKEAMNEAIKDWSNN---ILNSHYLIGTASGPHPYPTIVRDFQ  346 (410)
Q Consensus       272 ~~~vv~p~~~~~~~~~~~~~~~~~Ga~v--~~v~~g~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~  346 (410)
                      +|+||||++..+  ..++.+|+.+||+|  +.++ ++++++.+.+.+..++.   ....++..      |+++.....||
T Consensus       152 ~~~I~~P~~~~s--~~k~~~m~~~GA~V~~v~v~-g~~d~~~~~~~~~~~d~~~~~~~~~~~~------n~~n~~~~~gq  222 (428)
T 1vb3_A          152 KVVILYPRGKIS--PLQEKLFCTLGGNIETVAID-GDFDACQALVKQAFDDEELKVALGLNSA------NSINISRLLAQ  222 (428)
T ss_dssp             EEEEEEETTCSC--HHHHHHHHSCCTTEEEEEEE-SCHHHHHHHHHHGGGCHHHHHHHTEECC------STTSHHHHHHT
T ss_pred             eEEEEECCCCCC--HHHHHHHHhcCCeEEEEEeC-CCHHHHHHHHHHHHhchhhhhhcCeeeC------CCCCHHHHHHH
Confidence            999999985344  36777999999998  6664 55888887777765421   00123332      33332257899


Q ss_pred             hhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCC
Q psy11239        347 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGI  399 (410)
Q Consensus       347 ~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~  399 (410)
                      .|++.||++|+.+.+..+|+||+|+|+||+++|++.+++..  .+|||+|++.+.
T Consensus       223 ~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii~a~~~~~  277 (428)
T 1vb3_A          223 ICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVND  277 (428)
T ss_dssp             THHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCC
T ss_pred             HHHHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEEeecCCCh
Confidence            99999999999733347999999999999999999998753  569999998764

>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}

Probab=99.93  E-value=7.2e-26  Score=228.50  Aligned_cols=165  Identities=12%  Similarity=0.018  Sum_probs=124.8

Q ss_pred             CcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHH---HHHH-HHhcCCceEEEeCccHHH-HHHHHHHHHcCCcE
Q psy11239         16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQ---SLLA-KFLKKKRIICETGAGMHG-VSTATSCCLLNLES   90 (410)
Q Consensus        16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~---~~~~-~~~~~~~~v~~~ssGN~g-~a~A~~a~~~G~~~   90 (410)
                      |||+++.        .++|+|.|++|||||||||++...   +..+ ++.+.+..|+++|||||| .++|++|+++|++|
T Consensus        94 ~pl~~l~--------~~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~~~~Vv~ASSGNtG~aa~aa~a~~~Gi~~  165 (468)
T 4f4f_A           94 CPLVQTD--------ANEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDI  165 (468)
T ss_dssp             SCEEEEE--------TTEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHTTCSSEEE
T ss_pred             CceEEec--------CCeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCchHHHHHHHHHHhccCCcE
Confidence            8888752        369999999999999999987644   2222 244554456667999999 55577799999999


Q ss_pred             EEEeccC-CccccchhHHHHHhcCC-EE--EEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhH
Q psy11239         91 IIYIGEN-DYKRQNINVKKIKLLGG-TV--YLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSII  166 (410)
Q Consensus        91 ~iv~p~~-~~~~~~~k~~~~~~~GA-~v--~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti  166 (410)
                      +||||++ ++   +.|+.+|+.+|+ +|  +.++ |+|+++.+.+.+++.+..-...+   .....|++++..+.||+|+
T Consensus       166 ~I~~P~~~~s---~~k~~~~~~~gganV~vv~v~-g~fdda~~~~k~~~~d~~~~~~~---~~~~vnsin~~ri~GQ~T~  238 (468)
T 4f4f_A          166 FILFPNGRVS---PVQQRQMTSSGFSNVHALSIE-GNFDDCQNLVKGMFNDLEFCDAL---SLSGVNSINWARIMPQVVY  238 (468)
T ss_dssp             EEEEETTCSC---HHHHHHHHCSCCTTEEEEEEE-SCHHHHHHHHHHHHHCHHHHHHH---TEEECCTTSHHHHGGGHHH
T ss_pred             EEEeCCCCCC---HHHHHHHHhcCCCeEEEeecC-CCHHHHHHHHHHHHhcccccccc---ceEeCCCCCHHHHHhHHHH
Confidence            9999998 77   589999999974 54  6777 89999999998887643100001   1122355433368999999


Q ss_pred             HHHHHHhhhhcCCCccE---EEEecCCCCceeeccc
Q psy11239        167 GYEIHQQLNFNFYNKKY---ILACVGGGSNALGRPT  199 (410)
Q Consensus       167 ~~EI~~q~~~~~~~~d~---iv~~vG~Gg~~~G~~t  199 (410)
                      ++||++|+.    .||.   |++|+|+||+++|.+.
T Consensus       239 ~~Ei~~ql~----~~d~~v~vvVPvG~GG~i~g~~~  270 (468)
T 4f4f_A          239 YFTAALSLG----APDRAVSFTVPTGNFGDIFAGYV  270 (468)
T ss_dssp             HHHHHHHTT----TTSSCEEEEEECSSSHHHHHHHH
T ss_pred             HHHHHHhcc----cCCCCeEEEEEeCCcHHHHHHHH
Confidence            999999975    4677   9999999999999753

>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1

Probab=99.92  E-value=2.3e-25  Score=227.51  Aligned_cols=172  Identities=13%  Similarity=-0.033  Sum_probs=127.4

Q ss_pred             CCCCcCcc--ccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH----Hhc--------CCceEEEeCccHHHHH
Q psy11239         13 GRPTPIYY--CKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK----FLK--------KKRIICETGAGMHGVS   78 (410)
Q Consensus        13 ~~~TPl~~--~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~----~~~--------~~~~v~~~ssGN~g~a   78 (410)
                      ...|||++  ++++      .+||+|.|++|||||||||.+.....+..    +.+        +..+|+++||||||+|
T Consensus        94 ~g~TPLv~~~l~~l------~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~~~Iv~ATSGNtG~A  167 (514)
T 1kl7_A           94 DEVTPLVQNVTGDK------ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSA  167 (514)
T ss_dssp             TTSSCEECCTTCSS------SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHH
T ss_pred             CCCCceeehhcccc------cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCccccccCCCCEEEECCCCcHHHH
Confidence            45699999  7544      47999999999999999998754432211    223        4557777899999999


Q ss_pred             HHHHH--HHcCCcEEEEeccC-CccccchhHHHH---HhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccC
Q psy11239         79 TATSC--CLLNLESIIYIGEN-DYKRQNINVKKI---KLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGP  152 (410)
Q Consensus        79 ~A~~a--~~~G~~~~iv~p~~-~~~~~~~k~~~~---~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (410)
                       |++|  ++.|++|+||||++ .+   +.++.+|   ..+|++|+.++ |+|+++++.+.+++.+..-...+   .....
T Consensus       168 -A~~a~a~~~Gi~~~I~~P~~~~S---~~q~~qm~~~~g~~~~vv~v~-g~fdda~~~vk~l~~~~~~~~~~---~~~~~  239 (514)
T 1kl7_A          168 -AIYGLRGKKDVSVFILYPTGRIS---PIQEEQMTTVPDENVQTLSVT-GTFDNCQDIVKAIFGDKEFNSKH---NVGAV  239 (514)
T ss_dssp             -HHHHHTTCTTEEEEEEEETTSSC---HHHHHHHHHCCCTTEEEEEES-SCHHHHHHHHHHHHHCSSCC--C---CBCCC
T ss_pred             -HHHHHHhhcCCeEEEEEcCCCCC---HHHHHHHhhhcCCCEEEEEcC-CCHHHHHHHHHHHHhcccccccc---eeEee
Confidence             6667  89999999999997 66   3566666   34556777777 79999999999888653111112   11234


Q ss_pred             ccccccccccchhHHHHHHHhh-hhcCCCccEEEEecCCCCceeecc
Q psy11239        153 HPYPTIVRDFQSIIGYEIHQQL-NFNFYNKKYILACVGGGSNALGRP  198 (410)
Q Consensus       153 ~p~~~~~~~g~~ti~~EI~~q~-~~~~~~~d~iv~~vG~Gg~~~G~~  198 (410)
                      |++++..+.||.+..+|+++|+ +.....||+||+|+|+||++.|.+
T Consensus       240 Ns~N~~ri~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~  286 (514)
T 1kl7_A          240 NSINWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGY  286 (514)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHH
T ss_pred             CCCCHhHHhhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHH
Confidence            6665445899999999999997 321235899999999999999975

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=99.92  E-value=4.4e-25  Score=222.90  Aligned_cols=172  Identities=9%  Similarity=-0.067  Sum_probs=128.6

Q ss_pred             CcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHH---HHHH-HHhcCCceEEEeCccHHHHHHHHHHH-HcCCcE
Q psy11239         16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQ---SLLA-KFLKKKRIICETGAGMHGVSTATSCC-LLNLES   90 (410)
Q Consensus        16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~---~~~~-~~~~~~~~v~~~ssGN~g~a~A~~a~-~~G~~~   90 (410)
                      |||+++..   . ++.++|+|.|++|||||||||++...   +..+ ++.+.+.+|+++||||||.|.|++++ ++|++|
T Consensus       103 ~Pl~~l~~---~-~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~~~~Vv~ASSGNtG~Aaa~a~~~~~Gi~~  178 (487)
T 3v7n_A          103 TPLTTLGT---E-NGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRV  178 (487)
T ss_dssp             SCEEEEEE---E-TTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTCCEEEEEECSSHHHHHHHHHHTTCTTEEE
T ss_pred             ceeEEecC---C-CCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhccCCeE
Confidence            78887631   0 12249999999999999999987554   2333 23445555666799999999777776 999999


Q ss_pred             EEEeccC-CccccchhHHHHHhcCC---EEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhH
Q psy11239         91 IIYIGEN-DYKRQNINVKKIKLLGG---TVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSII  166 (410)
Q Consensus        91 ~iv~p~~-~~~~~~~k~~~~~~~GA---~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti  166 (410)
                      +||||++ .+   +.|+++|+.+||   +|+.++ |+++++.+.+.+++.+..-...+   +....|++++..+.||+|.
T Consensus       179 ~I~~P~~~~s---~~k~~qm~~~Ga~nv~vv~v~-G~fDda~~~vk~~~~d~~~~~~~---~l~~vns~Np~ri~gQ~ty  251 (487)
T 3v7n_A          179 FMLSPHKKMS---AFQTAQMYSLQDPNIFNLAVN-GVFDDCQDIVKAVSNDHAFKAQQ---KIGTVNSINWARVVAQVVY  251 (487)
T ss_dssp             EEEEETTCSC---HHHHHHHHTCCCTTEEEEEEE-SCHHHHHHHHHHHHTCHHHHHHT---TEECCSTTCHHHHHHHHHH
T ss_pred             EEEECCCCCC---HHHHHHHHhcCCCcEEEEEEC-CCHHHHHHHHHHhhhchHHHhhc---CeeeeCCCCHHHHHhHHHH
Confidence            9999997 77   589999999998   788888 89999999988876532000001   1123466643358999999


Q ss_pred             HHHHHHhhhhcCCCccEEEEecCCCCceeecc
Q psy11239        167 GYEIHQQLNFNFYNKKYILACVGGGSNALGRP  198 (410)
Q Consensus       167 ~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~  198 (410)
                      .+|+..|+...+..||+|++|+|+||+++|.+
T Consensus       252 y~~~~~el~~~~~~~d~vvVP~GngG~i~g~~  283 (487)
T 3v7n_A          252 YFKGYFAATRSNDERVSFTVPSGNFGNVCAGH  283 (487)
T ss_dssp             HHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEEEecCchHHHHHHH
Confidence            99998887433346999999999999999974

>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1

Probab=99.91  E-value=6.9e-24  Score=216.57  Aligned_cols=191  Identities=13%  Similarity=-0.041  Sum_probs=138.9

Q ss_pred             cccccc--cccccccccCceeEEeecCCCCCchhhHHHHHHHHH---HHH-HcC--------CCceEEecCchHHHHHHH
Q psy11239        198 PTPIYY--CKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSL---LAK-FLK--------KKRIICETGAGMHGVSTA  263 (410)
Q Consensus       198 ~tpl~~--~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~---~a~-~~g--------~~~~v~~~ssGN~g~a~A  263 (410)
                      .|||++  +.++      .++|+|.|..|||||||||++..++.   .+. +.|        ....|+++||||||.| |
T Consensus        96 ~TPLv~~~l~~l------~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~~~Iv~ATSGNtG~A-A  168 (514)
T 1kl7_A           96 VTPLVQNVTGDK------ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSA-A  168 (514)
T ss_dssp             SSCEECCTTCSS------SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHH-H
T ss_pred             CCceeehhcccc------cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCccccccCCCCEEEECCCCcHHHH-H
Confidence            599987  5444      47999999999999999999987743   332 334        3566778999999999 6


Q ss_pred             HHH--HHcCCcEEEEEcCCCccchhhhHHHH-H--HCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCC
Q psy11239        264 TSC--CLLNLESIIYIGENDYKRQNINVKKI-K--LLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY  338 (410)
Q Consensus       264 ~~a--~~~G~~~~vv~p~~~~~~~~~~~~~~-~--~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  338 (410)
                      ++|  ++.|++|+||||++..+  ..+..+| +  .+|++|+.++ |+++++.+.+.+.+.+..-...+.+ +..  |++
T Consensus       169 ~~a~a~~~Gi~~~I~~P~~~~S--~~q~~qm~~~~g~~~~vv~v~-g~fdda~~~vk~l~~~~~~~~~~~~-~~~--Ns~  242 (514)
T 1kl7_A          169 IYGLRGKKDVSVFILYPTGRIS--PIQEEQMTTVPDENVQTLSVT-GTFDNCQDIVKAIFGDKEFNSKHNV-GAV--NSI  242 (514)
T ss_dssp             HHHHTTCTTEEEEEEEETTSSC--HHHHHHHHHCCCTTEEEEEES-SCHHHHHHHHHHHHHCSSCC--CCB-CCC--CSC
T ss_pred             HHHHHhhcCCeEEEEEcCCCCC--HHHHHHHhhhcCCCEEEEEcC-CCHHHHHHHHHHHHhccccccccee-Eee--CCC
Confidence            666  89999999999986233  1334444 3  3455677764 6699999999888876420011111 122  444


Q ss_pred             hhHHHhhhhhHHHHHHHhh-hhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCc
Q psy11239        339 PTIVRDFQSIIGYEIHQQL-NFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISK  401 (410)
Q Consensus       339 ~~~~~~g~~t~g~Ei~~q~-~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~  401 (410)
                      +..+..||.|.++|+++|+ ......+|+||+|+|+||++.|.+...+.  +.+|+|+|||+++.+
T Consensus       243 N~~ri~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~ak~~G~p~~rli~v~~~n~~l  308 (514)
T 1kl7_A          243 NWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNENDIL  308 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCCHH
T ss_pred             CHhHHhhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHHHHHcCCCCCEEEEEeCCcchH
Confidence            4447889999999999999 43224689999999999999998764443  377999999998544

>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}

Probab=99.91  E-value=8.6e-24  Score=213.36  Aligned_cols=174  Identities=11%  Similarity=-0.027  Sum_probs=133.2

Q ss_pred             ceeEEeecCCCCCchhhHHHHHHH---HHHH-HHcCCCceEEecCchHHHHH-HHHHHHHcCCcEEEEEcCCCccchhhh
Q psy11239        214 SKIFLKREDLNFTGAHKMNNSIAQ---SLLA-KFLKKKRIICETGAGMHGVS-TATSCCLLNLESIIYIGENDYKRQNIN  288 (410)
Q Consensus       214 ~~v~~K~e~~~ptgS~K~R~a~~~---~~~a-~~~g~~~~v~~~ssGN~g~a-~A~~a~~~G~~~~vv~p~~~~~~~~~~  288 (410)
                      .++|+|.|..|||||||||++..+   +..+ ++.+.+..|+++||||||.+ +|++|+++|++++||||++..+  ..+
T Consensus       101 ~~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~~~~Vv~ASSGNtG~aa~aa~a~~~Gi~~~I~~P~~~~s--~~k  178 (468)
T 4f4f_A          101 ANEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVS--PVQ  178 (468)
T ss_dssp             TTEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHTTCSSEEEEEEEETTCSC--HHH
T ss_pred             CCeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCchHHHHHHHHHHhccCCcEEEEeCCCCCC--HHH
Confidence            369999999999999999999887   4444 35566555667999999954 5777999999999999987233  367


Q ss_pred             HHHHHHCCC-EE--EEEeCCCHHHHHHHHHHHHHccCC---CceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCC
Q psy11239        289 VKKIKLLGG-TV--YLVQYGNLKEAMNEAIKDWSNNIL---NSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFY  362 (410)
Q Consensus       289 ~~~~~~~Ga-~v--~~v~~g~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~  362 (410)
                      +.+|+.+|+ +|  +.++ |+++++.+.+.+...+.+-   ..++..      |+++..++.||+|++.||++|+.    
T Consensus       179 ~~~~~~~gganV~vv~v~-g~fdda~~~~k~~~~d~~~~~~~~~~~v------nsin~~ri~GQ~T~~~Ei~~ql~----  247 (468)
T 4f4f_A          179 QRQMTSSGFSNVHALSIE-GNFDDCQNLVKGMFNDLEFCDALSLSGV------NSINWARIMPQVVYYFTAALSLG----  247 (468)
T ss_dssp             HHHHHCSCCTTEEEEEEE-SCHHHHHHHHHHHHHCHHHHHHHTEEEC------CTTSHHHHGGGHHHHHHHHHHTT----
T ss_pred             HHHHHhcCCCeEEEeecC-CCHHHHHHHHHHHHhccccccccceEeC------CCCCHHHHHhHHHHHHHHHHhcc----
Confidence            789999974 54  5563 6799999988887765310   023333      33333378999999999999995    


Q ss_pred             CCCE---EEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCc
Q psy11239        363 NKKY---ILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISK  401 (410)
Q Consensus       363 ~~d~---iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~  401 (410)
                      .+|.   ||+|+|+||+++|++.+.+-  +..|+|+| +.+++.
T Consensus       248 ~~d~~v~vvVPvG~GG~i~g~~~Ak~mGlPi~kli~a-~n~~~~  290 (468)
T 4f4f_A          248 APDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA-TNDNDI  290 (468)
T ss_dssp             TTSSCEEEEEECSSSHHHHHHHHHHHHTCCEEEEEEE-ECSCCH
T ss_pred             cCCCCeEEEEEeCCcHHHHHHHHHHHhCCCCCEEEEE-eCCchH
Confidence            6788   99999999999999877442  24599999 777764

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=99.91  E-value=2e-23  Score=210.87  Aligned_cols=176  Identities=9%  Similarity=-0.103  Sum_probs=137.4

Q ss_pred             eeEEeecCCCCCchhhHHHHHHH---HHHHH-HcCCCceEEecCchHHHHHHHHHHH-HcCCcEEEEEcCCCccchhhhH
Q psy11239        215 KIFLKREDLNFTGAHKMNNSIAQ---SLLAK-FLKKKRIICETGAGMHGVSTATSCC-LLNLESIIYIGENDYKRQNINV  289 (410)
Q Consensus       215 ~v~~K~e~~~ptgS~K~R~a~~~---~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~-~~G~~~~vv~p~~~~~~~~~~~  289 (410)
                      ++|+|.|..|||||||||++..+   +..+. +.+.+..|+++||||||.|+|++++ ++|++|+||||++..+  ..++
T Consensus       115 ~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~~~~Vv~ASSGNtG~Aaa~a~~~~~Gi~~~I~~P~~~~s--~~k~  192 (487)
T 3v7n_A          115 PVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPHKKMS--AFQT  192 (487)
T ss_dssp             EEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTCCEEEEEECSSHHHHHHHHHHTTCTTEEEEEEEETTCSC--HHHH
T ss_pred             ceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhccCCeEEEEECCCCCC--HHHH
Confidence            49999999999999999999877   55553 4566665677999999999777776 8999999999986334  3778


Q ss_pred             HHHHHCCC---EEEEEeCCCHHHHHHHHHHHHHccC---CCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCC
Q psy11239        290 KKIKLLGG---TVYLVQYGNLKEAMNEAIKDWSNNI---LNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN  363 (410)
Q Consensus       290 ~~~~~~Ga---~v~~v~~g~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~  363 (410)
                      .+|+.+||   +|+.++ |+++++.+.+.+...+..   ....+.+      |+++..+..||.|.++|+..|+.+.+..
T Consensus       193 ~qm~~~Ga~nv~vv~v~-G~fDda~~~vk~~~~d~~~~~~~~l~~v------ns~Np~ri~gQ~tyy~~~~~el~~~~~~  265 (487)
T 3v7n_A          193 AQMYSLQDPNIFNLAVN-GVFDDCQDIVKAVSNDHAFKAQQKIGTV------NSINWARVVAQVVYYFKGYFAATRSNDE  265 (487)
T ss_dssp             HHHHTCCCTTEEEEEEE-SCHHHHHHHHHHHHTCHHHHHHTTEECC------STTCHHHHHHHHHHHHHHHHHTCSSTTC
T ss_pred             HHHHhcCCCcEEEEEEC-CCHHHHHHHHHHhhhchHHHhhcCeeee------CCCCHHHHHhHHHHHHHHHHHHHhcCCC
Confidence            89999998   777774 779999888887765320   0123332      4444337889999999999998533567


Q ss_pred             CCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCC
Q psy11239        364 KKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGI  399 (410)
Q Consensus       364 ~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~  399 (410)
                      +|+|++|+|+||+++|++.+.+-  +.+|+|+||+++.
T Consensus       266 ~d~vvVP~GngG~i~g~~~A~~mGlp~~rli~a~~~n~  303 (487)
T 3v7n_A          266 RVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNEND  303 (487)
T ss_dssp             CEEEEEGGGCHHHHHHHHHHHHTTCCEEEEEEECTTCH
T ss_pred             CcEEEEecCchHHHHHHHHHHHcCCCCceEEEEeCCCc
Confidence            99999999999999999866542  2569999999983

>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2

Probab=87.50  E-value=3  Score=36.17  Aligned_cols=70  Identities=11%  Similarity=0.049  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEe-------ccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         48 MNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI-------GENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        48 ~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~-------p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      +....+.+..+++.+-+.+|+++|+|.++..++-+-  .|++.++|.       |.. .+-.++.++.++..|.+|+...
T Consensus        29 ~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~-~e~~~e~~~~L~~~G~~V~t~t  105 (201)
T 1vp8_A           29 EETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGE-NTMPPEVEEELRKRGAKIVRQS  105 (201)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTC-CSSCHHHHHHHHHTTCEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCC-CcCCHHHHHHHHhCCCEEEEEe
Confidence            333335555777888888999888899997655533  788999887       321 1123688999999999998653

>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2

Probab=86.60  E-value=4.6  Score=35.02  Aligned_cols=73  Identities=11%  Similarity=0.053  Sum_probs=52.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE-------cCCCccchhhhHHHHHHCCCEEE
Q psy11239        228 AHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI-------GENDYKRQNINVKKIKLLGGTVY  300 (410)
Q Consensus       228 S~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~-------p~~~~~~~~~~~~~~~~~Ga~v~  300 (410)
                      .|-+..+...+..|++.+.+.+|+-+++|.++..++-+.  -|++.++|.       |.. .+-.+...+.++..|.+|+
T Consensus        26 eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~-~e~~~e~~~~L~~~G~~V~  102 (201)
T 1vp8_A           26 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGE-NTMPPEVEEELRKRGAKIV  102 (201)
T ss_dssp             GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTC-CSSCHHHHHHHHHTTCEEE
T ss_pred             ccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCC-CcCCHHHHHHHHhCCCEEE
Confidence            344455555566888899999998889999987766633  688999988       322 1113577889999999998


Q ss_pred             EEe
Q psy11239        301 LVQ  303 (410)
Q Consensus       301 ~v~  303 (410)
                      ...
T Consensus       103 t~t  105 (201)
T 1vp8_A          103 RQS  105 (201)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=80.83  E-value=30  Score=35.93  Aligned_cols=52  Identities=12%  Similarity=-0.047  Sum_probs=35.7

Q ss_pred             EEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccc-------hhhhHHHHHHCCCEEEE
Q psy11239        250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKR-------QNINVKKIKLLGGTVYL  301 (410)
Q Consensus       250 v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~-------~~~~~~~~~~~Ga~v~~  301 (410)
                      |+.+++|..|.-+|...+.+|.+++++.+......       ...-.+.++..|.+++.
T Consensus       528 ViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~  586 (690)
T 3k30_A          528 VYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVT  586 (690)
T ss_dssp             EEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEE
T ss_pred             EEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEc
Confidence            33233789999999999999999999987543211       11224566778888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	410
d1v8za1	386	c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun	9e-40
d1v8za1	386	c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun	2e-36
d1qopb_	390	c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S	4e-36
d1qopb_	390	c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S	9e-36
d1tdja1	331	c.79.1.1 (A:5-335) Threonine deaminase {Escherichi	4e-18
d1tdja1	331	c.79.1.1 (A:5-335) Threonine deaminase {Escherichi	2e-16
d1tyza_	338	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	2e-16
d1tyza_	338	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	9e-16
d1f2da_	341	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	1e-15
d1f2da_	341	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	6e-15
d1v71a1	318	c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S	1e-14
d1v71a1	318	c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S	2e-13
d1jbqa_	355	c.79.1.1 (A:) Cystathionine beta-synthase {Human (	8e-14
d1o58a_	293	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	9e-14
d1o58a_	293	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	8e-12
d1ve1a1	302	c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C	9e-13
d1ve1a1	302	c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C	1e-12
d1ve5a1	310	c.79.1.1 (A:2-311) Threonine deaminase {Thermus th	5e-12
d1ve5a1	310	c.79.1.1 (A:2-311) Threonine deaminase {Thermus th	5e-12
d1p5ja_	319	c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa	1e-11
d1p5ja_	319	c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa	1e-11
d2bhsa1	292	c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C	3e-11
d2bhsa1	292	c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C	3e-11
d1j0aa_	325	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	3e-10
d1j0aa_	325	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	7e-10
d1v7ca_	351	c.79.1.1 (A:) Threonine synthase {Thermus thermoph	4e-10
d1v7ca_	351	c.79.1.1 (A:) Threonine synthase {Thermus thermoph	1e-09
d1wkva1	382	c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C	9e-10
d1wkva1	382	c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C	2e-09
d1e5xa_	477	c.79.1.1 (A:) Threonine synthase {Mouse-ear cress	1e-09
d1e5xa_	477	c.79.1.1 (A:) Threonine synthase {Mouse-ear cress	3e-09
d1fcja_	302	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	2e-09
d1fcja_	302	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	9e-09
d1y7la1	310	c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C	3e-09
d1y7la1	310	c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C	5e-09
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	2e-07
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	5e-07

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  143 bits (362), Expect = 9e-40
 Identities = 112/210 (53%), Positives = 145/210 (69%), Gaps = 4/210 (1%)

Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
              GRPTP+YY K ++  + G+KI+LKREDL   GAHK NN+I Q+LLAKF+ K R+I E
Sbjct: 45  TWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAE 104

Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEA 310
           TGAG HGV+TA +  LL ++  IY+G  D +RQ +NV ++KLLG  V  V  G   LK+A
Sbjct: 105 TGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDA 164

Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-KYILA 369
           +NEA++DW      +HYLIG+  GPHPYPTIVRDFQS+IG E   Q+          I+A
Sbjct: 165 INEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVA 224

Query: 370 CVGGGSNALGIFYTFI-NSNFKLVAIESGG 398
           CVGGGSNA+GIFY F+ +   KLV +E+GG
Sbjct: 225 CVGGGSNAMGIFYPFVNDKKVKLVGVEAGG 254

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  135 bits (340), Expect = 2e-36
 Identities = 102/187 (54%), Positives = 131/187 (70%), Gaps = 3/187 (1%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPTP+YY K ++  + G+KI+LKREDL   GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48  GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNE 130
           G HGV+TA +  LL ++  IY+G  D +RQ +NV ++KLLG  V  V  G   LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-KYILACVG 189
           A++DW      +HYLIG+  GPHPYPTIVRDFQS+IG E   Q+          I+ACVG
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVG 227

Query: 190 GGSNALG 196
           GGSNA+G
Sbjct: 228 GGSNAMG 234

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

 Score =  134 bits (337), Expect = 4e-36
 Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 4/201 (1%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
           GRPT +  C+NI+     + ++LKREDL   GAHK N  + Q+LLAK + K  II ETGA
Sbjct: 53  GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGA 111

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNE 130
           G HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+G  V  V  G   LK+A NE
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNE 171

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNF-YNKKYILACVG 189
           A++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E   Q+          ++ACVG
Sbjct: 172 ALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVG 231

Query: 190 GGSNALGRPTPIYYCKNISNI 210
           GGSNA+G         ++  I
Sbjct: 232 GGSNAIGMFADFINDTSVGLI 252

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

 Score =  133 bits (335), Expect = 9e-36
 Identities = 95/210 (45%), Positives = 130/210 (61%), Gaps = 15/210 (7%)

Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
           F    K Y            GRPT +  C+NI+     + ++LKREDL   GAHK N  +
Sbjct: 44  FADLLKNYA-----------GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVL 91

Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
            Q+LLAK + K  II ETGAG HGV++A +  LL L+  IY+G  D +RQ+ NV +++L+
Sbjct: 92  GQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 151

Query: 296 GGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
           G  V  V  G   LK+A NEA++DWS +   +HY++GTA+GPHPYPTIVR+FQ +IG E 
Sbjct: 152 GAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEET 211

Query: 354 HQQLNFNF-YNKKYILACVGGGSNALGIFY 382
             Q+          ++ACVGGGSNA+G+F 
Sbjct: 212 KAQILDKEGRLPDAVIACVGGGSNAIGMFA 241

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

 Score = 82.6 bits (203), Expect = 4e-18
 Identities = 31/195 (15%), Positives = 59/195 (30%), Gaps = 19/195 (9%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
             + TP+   + +S+ L  + I +KRED     + K+  + A        +K   +    
Sbjct: 24  AAQVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITAS 82

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 314
           AG H    A S   L ++++I +       +   V+     GG V               
Sbjct: 83  AGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGF---GGEVL-------------- 125

Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-KYILACVGG 373
           +   + +   +  +  +      +         I G                 +   VGG
Sbjct: 126 LHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGG 185

Query: 374 GSNALGIFYTFINSN 388
           G  A G+        
Sbjct: 186 GGLAAGVAVLIKQLM 200

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

 Score = 77.6 bits (190), Expect = 2e-16
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 19/185 (10%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
            + TP+   + +S+ L  + I +KRED     + K+  + A        +K   +    A
Sbjct: 25  AQVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASA 83

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
           G H    A S   L ++++I +       +   V+     GG V               +
Sbjct: 84  GNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGF---GGEVL--------------L 126

Query: 133 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-KYILACVGGG 191
              + +   +  +  +      +         I G                 +   VGGG
Sbjct: 127 HGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGG 186

Query: 192 SNALG 196
             A G
Sbjct: 187 GLAAG 191

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 77.8 bits (190), Expect = 2e-16
 Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 196 GRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRIIC 251
             PTPI     +S  L G   ++ KRED N   A   N +     L   A       ++ 
Sbjct: 13  FGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVS 72

Query: 252 ETGA-GMHGVSTATSCCLLNLESIIYIGEN-----DYKRQNINVKKIKLLGGTVYLVQYG 305
             G         A     L ++ ++              +  N++  ++LG  V LV  G
Sbjct: 73  IGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG 132

Query: 306 N--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 363
                    E   +         Y I      HP   +     +        +L F F  
Sbjct: 133 FDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFD- 191

Query: 364 KKYILACVGGGSNALGIFYTF 384
             Y++ C   GS   G+   F
Sbjct: 192 --YVVVCSVTGSTQAGMVVGF 210

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 75.5 bits (184), Expect = 9e-16
 Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 13  GRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRIIC 68
             PTPI     +S  L G   ++ KRED N   A   N +     L   A       ++ 
Sbjct: 13  FGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVS 72

Query: 69  ETGA-GMHGVSTATSCCLLNLESIIYIGEN-----DYKRQNINVKKIKLLGGTVYLVQYG 122
             G         A     L ++ ++              +  N++  ++LG  V LV  G
Sbjct: 73  IGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG 132

Query: 123 N--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
                    E   +         Y I      HP   +     +        +L F F  
Sbjct: 133 FDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFD- 191

Query: 181 KKYILACVGGGSNALGRPTPI 201
             Y++ C   GS   G     
Sbjct: 192 --YVVVCSVTGSTQAGMVVGF 210

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 14/201 (6%)

Query: 197 RPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNS-IAQSLLAKFL---KKKRIIC 251
            P+PI     +S  L     ++ KRED N   A   N     + ++   +       +  
Sbjct: 14  GPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSI 73

Query: 252 ETGAGMHGVSTATSCCLLNLESIIYI--------GENDYKRQNINVKKIKLLGGTVYLVQ 303
                      A     L  + ++           E D   +  N++  +++G  V +++
Sbjct: 74  GGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIE 133

Query: 304 YGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 363
                  M ++  +    + ++ +                        E+  Q       
Sbjct: 134 -DGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIK 192

Query: 364 KKYILACVGGGSNALGIFYTF 384
              I+ C   GS   GI    
Sbjct: 193 FDKIVVCCVTGSTTAGILAGM 213

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

 Score = 73.2 bits (178), Expect = 6e-15
 Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 14/201 (6%)

Query: 14  RPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNS-IAQSLLAKFL---KKKRIIC 68
            P+PI     +S  L     ++ KRED N   A   N     + ++   +       +  
Sbjct: 14  GPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSI 73

Query: 69  ETGAGMHGVSTATSCCLLNLESIIYI--------GENDYKRQNINVKKIKLLGGTVYLVQ 120
                      A     L  + ++           E D   +  N++  +++G  V +++
Sbjct: 74  GGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIE 133

Query: 121 YGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
                  M ++  +    + ++ +                        E+  Q       
Sbjct: 134 -DGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIK 192

Query: 181 KKYILACVGGGSNALGRPTPI 201
              I+ C   GS   G    +
Sbjct: 193 FDKIVVCCVTGSTTAGILAGM 213

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 71.9 bits (175), Expect = 1e-14
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 21/190 (11%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 256
             TP+     ++     +++F K E+    GA K   ++         ++K  +    +G
Sbjct: 20  NKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSG 78

Query: 257 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ--YGNLKEAMNEA 314
            H  + A S  +L + + I +  +  + +   V   K  GG V +      + ++   E 
Sbjct: 79  NHAQAIALSAKILGIPAKIIMPLDAPEAK---VAATKGYGGQVIMYDRYKDDREKMAKEI 135

Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
            +     I+  +      +G                 E+ +++         +  C+GGG
Sbjct: 136 SEREGLTIIPPYDHPHVLAGQGTAA-----------KELFEEVG----PLDALFVCLGGG 180

Query: 375 SNALGIFYTF 384
               G     
Sbjct: 181 GLLSGSALAA 190

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 68.4 bits (166), Expect = 2e-13
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 73
             TP+     ++     +++F K E+    GA K   ++         ++K  +    +G
Sbjct: 20  NKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSG 78

Query: 74  MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ--YGNLKEAMNEA 131
            H  + A S  +L + + I +  +  + +   V   K  GG V +      + ++   E 
Sbjct: 79  NHAQAIALSAKILGIPAKIIMPLDAPEAK---VAATKGYGGQVIMYDRYKDDREKMAKEI 135

Query: 132 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
            +     I+  +      +G                 E+ +++         +  C+GGG
Sbjct: 136 SEREGLTIIPPYDHPHVLAGQGTAA-----------KELFEEVG----PLDALFVCLGGG 180

Query: 192 SNALG 196
               G
Sbjct: 181 GLLSG 185

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 8e-14
 Identities = 30/184 (16%), Positives = 52/184 (28%), Gaps = 16/184 (8%)

Query: 16  TPIYYCKNISNIL-KGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETG 71
           TP+     I        ++  K E  N  G+ K       I  +     LK    I E  
Sbjct: 45  TPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPT 104

Query: 72  AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 131
           +G  G+  A +  +     II +     K  +  V  ++ LG  +         ++    
Sbjct: 105 SGNTGIGLALAAAVRGYRCIIVM---PEKMSSEKVDVLRALGAEIVRTPTNARFDSPESH 161

Query: 132 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACVG 189
           +            L       H           +  Y+          + K   ++A VG
Sbjct: 162 VGVA-------WRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVG 214

Query: 190 GGSN 193
            G  
Sbjct: 215 TGGT 218

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score = 69.0 bits (168), Expect = 9e-14
 Identities = 40/203 (19%), Positives = 65/203 (32%), Gaps = 19/203 (9%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMH 258
           TPI    +I +     +IFLK E  N  G+ K   ++   L A+     +         +
Sbjct: 11  TPIVRLDSIDS-----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGN 65

Query: 259 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDW 318
                          +I         +   V K+   G  + L       +   E   + 
Sbjct: 66  MGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML--GAELVLTPGELGMKGAVEKALEI 123

Query: 319 SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNAL 378
           S     +H L          P  V   Q   G EI +Q+++        +A VG G    
Sbjct: 124 SRET-GAHML-----NQFENPYNVYSHQFTTGPEILKQMDYQI---DAFVAGVGTGGTIS 174

Query: 379 GI---FYTFINSNFKLVAIESGG 398
           G+      F  +  K+VA+E   
Sbjct: 175 GVGRVLKGFFGNGVKIVAVEPAK 197

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.2 bits (153), Expect = 8e-12
 Identities = 35/181 (19%), Positives = 56/181 (30%), Gaps = 16/181 (8%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMH 75
           TPI    +I +     +IFLK E  N  G+ K   ++   L A+     +         +
Sbjct: 11  TPIVRLDSIDS-----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGN 65

Query: 76  GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDW 135
                          +I         +   V K+   G  + L       +   E   + 
Sbjct: 66  MGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML--GAELVLTPGELGMKGAVEKALEI 123

Query: 136 SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNAL 195
           S     +H L          P  V   Q   G EI +Q+++        +A VG G    
Sbjct: 124 SRET-GAHML-----NQFENPYNVYSHQFTTGPEILKQMDYQI---DAFVAGVGTGGTIS 174

Query: 196 G 196
           G
Sbjct: 175 G 175

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

 Score = 66.1 bits (160), Expect = 9e-13
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 21/210 (10%)

Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLK--K 246
             A+G+ TP+     +      +++++K E LN  G+ K       I  +     L+   
Sbjct: 4   EGAIGK-TPVVRLAKVVEPD-MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS 61

Query: 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN 306
            ++I E  +G  G+  A          I+         Q    +K  L      LV    
Sbjct: 62  GQVIVEPTSGNTGIGLAMIAASRGYRLILT-----MPAQMSEERKRVLKAFGAELVLTDP 116

Query: 307 LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY 366
            +  +    +          ++          P  VR      G E+++ L         
Sbjct: 117 ERRMLAAREEALRLKEELGAFMP----DQFKNPANVRAHYETTGPELYEALEGRID---A 169

Query: 367 ILACVGGGSNALGIFYTF--INSNFKLVAI 394
            +   G G    G+         + K++A+
Sbjct: 170 FVYGSGTGGTITGVGRYLKERIPHVKVIAV 199

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

 Score = 65.7 bits (159), Expect = 1e-12
 Identities = 30/200 (15%), Positives = 57/200 (28%), Gaps = 18/200 (9%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLK--KKRIICET 70
           TP+     +      +++++K E LN  G+ K       I  +     L+    ++I E 
Sbjct: 10  TPVVRLAKVVEPD-MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEP 68

Query: 71  GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNE 130
            +G  G+  A          I+         Q    +K  L      LV     +  +  
Sbjct: 69  TSGNTGIGLAMIAASRGYRLILT-----MPAQMSEERKRVLKAFGAELVLTDPERRMLAA 123

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 190
             +          ++          P  VR      G E+++ L          +   G 
Sbjct: 124 REEALRLKEELGAFMP----DQFKNPANVRAHYETTGPELYEALEGRID---AFVYGSGT 176

Query: 191 GSNALGRPTPIYYCKNISNI 210
           G    G    +        +
Sbjct: 177 GGTITGVGRYLKERIPHVKV 196

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

 Score = 64.3 bits (155), Expect = 5e-12
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 15/178 (8%)

Query: 14  RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 73
             TP+   + +  +L G ++ LK E L  TG+ K   ++++   A  L+  + +    +G
Sbjct: 18  HRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSK---ALALENPKGLLAVSSG 73

Query: 74  MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIK 133
            H    A +  +L +++++ + E+    +    +          +      + A     +
Sbjct: 74  NHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEE 133

Query: 134 DWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
                I            P   P ++    +     + Q      +    +    GGG
Sbjct: 134 TGYALI-----------HPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGG 180

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

 Score = 64.3 bits (155), Expect = 5e-12
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 15/178 (8%)

Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 256
             TP+   + +  +L G ++ LK E L  TG+ K   ++++   A  L+  + +    +G
Sbjct: 18  HRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSK---ALALENPKGLLAVSSG 73

Query: 257 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIK 316
            H    A +  +L +++++ + E+    +    +          +      + A     +
Sbjct: 74  NHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEE 133

Query: 317 DWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
                I            P   P ++    +     + Q      +    +    GGG
Sbjct: 134 TGYALI-----------HPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGG 180

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 6/164 (3%)

Query: 13  GRP----TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 68
           G P    TPI     +S +  G+ ++LK +    +G+ K+                  +C
Sbjct: 1   GEPLHVKTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC 59

Query: 69  ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 128
            + AG  G++ A +   L + + I +           +K        V  +     + A 
Sbjct: 60  SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAK 118

Query: 129 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ 172
             A  +     +          G       +++        I  
Sbjct: 119 ALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIAL 162

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 6/164 (3%)

Query: 196 GRP----TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 251
           G P    TPI     +S +  G+ ++LK +    +G+ K+                  +C
Sbjct: 1   GEPLHVKTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC 59

Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 311
            + AG  G++ A +   L + + I +           +K        V  +     + A 
Sbjct: 60  SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAK 118

Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ 355
             A  +     +          G       +++        I  
Sbjct: 119 ALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIAL 162

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

 Score = 61.5 bits (148), Expect = 3e-11
 Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 16/198 (8%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 72
           TP+   + +     GS+++LK E  N  G+ K     + I ++     +K   ++ E  +
Sbjct: 10  TPLVKLQRMGPDN-GSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATS 68

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
           G  G++ A    L      + +              ++  G  + LV      E   +  
Sbjct: 69  GNTGIALAMIAALKGYRMKLLM---PDNMSQERRAAMRAYGAELILVTKEQGMEGARDLA 125

Query: 133 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 192
            + +N                  P       +  G EI QQ         + ++ +G   
Sbjct: 126 LEMANRGEGKLL------DQFNNPDNPYAHYTTTGPEIWQQTGGRI---THFVSSMGTTG 176

Query: 193 NALGRPTPIYYCKNISNI 210
              G    +        I
Sbjct: 177 TITGVSRFMREQSKPVTI 194

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

 Score = 61.5 bits (148), Expect = 3e-11
 Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 21/176 (11%)

Query: 184 ILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLL 240
           +   +G         TP+   + +     GS+++LK E  N  G+ K     + I ++  
Sbjct: 3   LEQTIGN--------TPLVKLQRMGPDN-GSEVWLKLEGNNPAGSVKDRAALSMIVEAEK 53

Query: 241 AKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300
              +K   ++ E  +G  G++ A    L      + +              ++  G  + 
Sbjct: 54  RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLM---PDNMSQERRAAMRAYGAELI 110

Query: 301 LVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ 356
           LV      E   +   + +N                  P       +  G EI QQ
Sbjct: 111 LVTKEQGMEGARDLALEMANRGEGKLL------DQFNNPDNPYAHYTTTGPEIWQQ 160

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 58.9 bits (141), Expect = 3e-10
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 15/195 (7%)

Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHK---MNNSIAQSLLAKFLKKKRI 249
           +   TPI Y  NIS  + G+ +++KR+DL     G +K   +   +  +L         I
Sbjct: 18  IPWETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKG--ADVVI 74

Query: 250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE 309
                   H   T  +   L L++I+ +   +  + N  + KI  +   VY  +      
Sbjct: 75  TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELM 134

Query: 310 AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 369
              E I +         Y+I    G  P  T+           + +    +      I+ 
Sbjct: 135 KYAEEIAEELKREGRKPYVIPPG-GASPIGTLGYVRA------VGEIATQSEVKFDSIVV 187

Query: 370 CVGGGSNALGIFYTF 384
             G G    G+    
Sbjct: 188 AAGSGGTLAGLSLGL 202

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 57.8 bits (138), Expect = 7e-10
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 15/198 (7%)

Query: 13  GRPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHK---MNNSIAQSLLAKFLKKKRII 67
              TPI Y  NIS  + G+ +++KR+DL     G +K   +   +  +L         I 
Sbjct: 19  PWETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKG--ADVVIT 75

Query: 68  CETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEA 127
                  H   T  +   L L++I+ +   +  + N  + KI  +   VY  +       
Sbjct: 76  VGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMK 135

Query: 128 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILAC 187
             E I +         Y+I    G  P  T+           + +    +      I+  
Sbjct: 136 YAEEIAEELKREGRKPYVIPPG-GASPIGTLGYVRA------VGEIATQSEVKFDSIVVA 188

Query: 188 VGGGSNALGRPTPIYYCK 205
            G G    G    +    
Sbjct: 189 AGSGGTLAGLSLGLSILN 206

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

 Score = 58.6 bits (140), Expect = 4e-10
 Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 14/209 (6%)

Query: 199 TPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGM 257
           TP+   K      K G +++ K E LN TG+ K          A     + + C +  G 
Sbjct: 29  TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVACAST-GN 87

Query: 258 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKD 317
              S A       + +I+ +         +    +    G   +   GN  +A+      
Sbjct: 88  TAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH---GARIVQVEGNFDDAL------ 138

Query: 318 WSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNA 377
                L   + +   +  +P+     + Q  + +E+  +L    +     +   G  +  
Sbjct: 139 RLTQKLTEAFPVALVNSVNPH---RLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAH 195

Query: 378 LGIFYTFINSNFKLVAIESGGISKKRTAS 406
              +  +             G      A 
Sbjct: 196 WMGYKAYHALGKAKRLPRMLGFQAAGAAP 224

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 14/180 (7%)

Query: 16  TPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGM 74
           TP+   K      K G +++ K E LN TG+ K          A     + + C +  G 
Sbjct: 29  TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVACAST-GN 87

Query: 75  HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKD 134
              S A       + +I+ +         +    +    G   +   GN  +A+      
Sbjct: 88  TAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH---GARIVQVEGNFDDAL------ 138

Query: 135 WSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNA 194
                L   + +   +  +P+     + Q  + +E+  +L    +     +   G  +  
Sbjct: 139 RLTQKLTEAFPVALVNSVNPH---RLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAH 195

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 57.5 bits (138), Expect = 9e-10
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 20/191 (10%)

Query: 5   DLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGA-HK---MNNSIAQSLLAKF 60
           D F     G+PTP+   +    +  G +++LK E  N      K       I++  L++ 
Sbjct: 88  DFFER---GKPTPLVRSRL--QLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISR--LSRR 140

Query: 61  LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120
           ++K  ++ +  +   GV+ +    L    + +Y+       +       +LLG  V +  
Sbjct: 141 VEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGA---AEEFGKLLPRLLGAQVIVDP 197

Query: 121 YGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
                  +   +   S N    H                         EI  Q       
Sbjct: 198 EAPSTVHLLPRVMKDSKNEGFVHV------NQFYNDANFEAHMRGTAREIFVQSRRGGLA 251

Query: 181 KKYILACVGGG 191
            + +   +G  
Sbjct: 252 LRGVAGSLGTS 262

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 29/206 (14%), Positives = 67/206 (32%), Gaps = 19/206 (9%)

Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGA-HK---MNNSIAQSLLAKFLKKKRIIC 251
           G+PTP+   +    +  G +++LK E  N      K       I++  L++ ++K  ++ 
Sbjct: 93  GKPTPLVRSRL--QLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISR--LSRRVEKGSLVA 148

Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 311
           +  +   GV+ +    L    + +Y+       +       +LLG  V +         +
Sbjct: 149 DATSSNFGVALSAVARLYGYRARVYLPGA---AEEFGKLLPRLLGAQVIVDPEAPSTVHL 205

Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACV 371
              +   S N    H                         EI  Q        + +   +
Sbjct: 206 LPRVMKDSKNEGFVHV------NQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSL 259

Query: 372 GGGSNA--LGIFYTFINSNFKLVAIE 395
           G   +      +   ++ + + V ++
Sbjct: 260 GTSGHMSAAAFYLQSVDPSIRAVLVQ 285

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 19/192 (9%), Positives = 53/192 (27%), Gaps = 19/192 (9%)

Query: 199 TPIYYCKNISN-ILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKR----IICET 253
           + +++ +      L  + +++K   ++ TG+ K             L+K +     +   
Sbjct: 122 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 181

Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNE 313
             G    + +  C    + SI+++  N      +              +  G    +++ 
Sbjct: 182 STGDTSAALSAYCASAGIPSIVFLPANKISMAQLV-----------QPIANGAFVLSIDT 230

Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 373
                   I      +                +      I     F++    +++   G 
Sbjct: 231 DFDGCMKLIREITAELPI---YLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGN 287

Query: 374 GSNALGIFYTFI 385
             N    +  F 
Sbjct: 288 LGNIYAFYKGFK 299

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 21/201 (10%), Positives = 61/201 (30%), Gaps = 17/201 (8%)

Query: 16  TPIYYCKNISN-ILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKR----IICET 70
           + +++ +      L  + +++K   ++ TG+ K             L+K +     +   
Sbjct: 122 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 181

Query: 71  GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNE 130
             G    + +  C    + SI+++  N      +              +  G    +++ 
Sbjct: 182 STGDTSAALSAYCASAGIPSIVFLPANKISMAQLV-----------QPIANGAFVLSIDT 230

Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 190
                   I      +      +   ++  + Q     EI QQ ++   +   +     G
Sbjct: 231 DFDGCMKLIREITAELPI-YLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLG 289

Query: 191 GSNALGRPTPIYYCKNISNIL 211
              A  +   +     + + +
Sbjct: 290 NIYAFYKGFKMCQELGLVDRI 310

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 18/202 (8%)

Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKR 248
           S  +G  TP+     I       +I  K E  N + + K     N I  +     LK   
Sbjct: 8   SLTIGH-TPLVRLNRIG----NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGV 62

Query: 249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK 308
            + E   G  G++ A        +  + + E     +   +K   L    V       +K
Sbjct: 63  ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLK--ALGANLVLTEGAKGMK 120

Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
            A+ +A +  +++      L          P      +   G EI +  +         +
Sbjct: 121 GAIQKAEEIVASDPQKYLLLQ-----QFSNPANPEIHEKTTGPEIWEDTDGQV---DVFI 172

Query: 369 ACVGGGSNALGIFYTFINSNFK 390
           + VG G    G+      +  K
Sbjct: 173 SGVGTGGTLTGVTRYIKGTKGK 194

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

 Score = 54.2 bits (129), Expect = 9e-09
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 17/181 (9%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 72
           TP+     I       +I  K E  N + + K     N I  +     LK    + E   
Sbjct: 14  TPLVRLNRIG----NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTN 69

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
           G  G++ A        +  + + E     +   +K   L    V       +K A+ +A 
Sbjct: 70  GNTGIALAYVAAARGYKLTLTMPETMSIERRKLLK--ALGANLVLTEGAKGMKGAIQKAE 127

Query: 133 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 192
           +  +++      L          P      +   G EI +  +         ++ VG G 
Sbjct: 128 EIVASDPQKYLLLQ-----QFSNPANPEIHEKTTGPEIWEDTDGQV---DVFISGVGTGG 179

Query: 193 N 193
            
Sbjct: 180 T 180

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

 Score = 55.7 bits (133), Expect = 3e-09
 Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 17/196 (8%)

Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKR 248
           S ++G  TP+   K+         + +K E  N + + K     N + Q+     L K +
Sbjct: 7   SYSIGN-TPLVRLKHFG---HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGK 62

Query: 249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK 308
            I +  +G  G++ A        +  + + E     +      +  LG  + L +     
Sbjct: 63  EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRL---LCGLGVNLVLTEGAKGM 119

Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
           +      ++   +  + + ++         P   +  +   G EI +  +        ++
Sbjct: 120 KGAIAKAEEIVASDPSRYVML----KQFENPANPQIHRETTGPEIWKDTDGKVD---VVV 172

Query: 369 ACVGGGSNALGIFYTF 384
           A VG G +  GI    
Sbjct: 173 AGVGTGGSITGISRAI 188

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

 Score = 55.0 bits (131), Expect = 5e-09
 Identities = 27/181 (14%), Positives = 62/181 (34%), Gaps = 16/181 (8%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 72
           TP+   K+         + +K E  N + + K     N + Q+     L K + I +  +
Sbjct: 13  TPLVRLKHFG---HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATS 69

Query: 73  GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
           G  G++ A        +  + + E     +      +  LG  + L +     +      
Sbjct: 70  GNTGIALAYVAAARGYKITLTMPETMSLERKRL---LCGLGVNLVLTEGAKGMKGAIAKA 126

Query: 133 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 192
           ++   +  + + ++         P   +  +   G EI +  +        ++A VG G 
Sbjct: 127 EEIVASDPSRYVML----KQFENPANPQIHRETTGPEIWKDTDGKVD---VVVAGVGTGG 179

Query: 193 N 193
           +
Sbjct: 180 S 180

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 16/192 (8%)

Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLK-KKRIICETG 254
           TP+ Y  N++      ++  K E +    + K     + I+ +     +K  + ++ E  
Sbjct: 14  TPLVYLNNVAEGC-VGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPT 72

Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 314
           +G  GV           +    I              +   G  + L       +     
Sbjct: 73  SGNTGVGL---AFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAK 129

Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
            ++      N + L          P   +      G EI +            ++ +G G
Sbjct: 130 AEEILAKTPNGYMLQ-----QFENPANPKIHYETTGPEIWKGTGGKID---GFVSGIGTG 181

Query: 375 SNALGIFYTFIN 386
               G       
Sbjct: 182 GTITGAGKYLKE 193

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 16/182 (8%)

Query: 16  TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLK-KKRIICETG 71
           TP+ Y  N++      ++  K E +    + K     + I+ +     +K  + ++ E  
Sbjct: 14  TPLVYLNNVAEGC-VGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPT 72

Query: 72  AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 131
           +G  GV           +    I              +   G  + L       +     
Sbjct: 73  SGNTGVGL---AFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAK 129

Query: 132 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
            ++      N + L          P   +      G EI +            ++ +G G
Sbjct: 130 AEEILAKTPNGYMLQ-----QFENPANPKIHYETTGPEIWKGTGGKID---GFVSGIGTG 181

Query: 192 SN 193
             
Sbjct: 182 GT 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	410
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	100.0
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	100.0
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	100.0
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	100.0
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	100.0
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	100.0
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	100.0
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	100.0
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	100.0
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	100.0
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	100.0
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	100.0
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	100.0
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	100.0
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.98
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	99.97
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.97
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	99.97
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	99.97
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	99.96
d1j0aa_	325	1-aminocyclopropane-1-carboxylate deaminase {Archa	99.93
d1j0aa_	325	1-aminocyclopropane-1-carboxylate deaminase {Archa	99.93
d1tyza_	338	1-aminocyclopropane-1-carboxylate deaminase {Pseud	99.92
d1f2da_	341	1-aminocyclopropane-1-carboxylate deaminase {Yeast	99.92
d1tyza_	338	1-aminocyclopropane-1-carboxylate deaminase {Pseud	99.92
d1f2da_	341	1-aminocyclopropane-1-carboxylate deaminase {Yeast	99.92
d1vb3a1	428	Threonine synthase {Escherichia coli [TaxId: 562]}	99.61
d1vb3a1	428	Threonine synthase {Escherichia coli [TaxId: 562]}	99.4
d1kl7a_	511	Threonine synthase {Baker's yeast (Saccharomyces c	97.8
d1kl7a_	511	Threonine synthase {Baker's yeast (Saccharomyces c	97.78
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.82
d1vp8a_	190	Hypothetical protein AF0103 {Archaeoglobus fulgidu	91.68
d1vp8a_	190	Hypothetical protein AF0103 {Archaeoglobus fulgidu	91.45
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	89.5
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.46
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.26
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.25
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	87.69
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	87.66
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.5
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	87.11
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	86.77
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.64
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.54
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.29
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.21
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.21
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	85.86
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.43
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.21
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.52
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	84.44
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.13
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	83.89
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.41
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	83.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	83.21
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	83.04
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	82.75
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	82.5
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	82.45
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	82.0
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	81.32
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	81.16
d1t57a_	186	Hypothetical protein MTH1675 {Methanobacterium the	81.06
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	80.6
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	80.07

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1e-39  Score=322.50  Aligned_cols=203  Identities=45%  Similarity=0.732  Sum_probs=182.0

Q ss_pred             hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239          2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~   81 (410)
                      ++++++++.|.++||||+++++|++.+ +++||+|+|++|||||||||+++.+++.+++.+.+.+|+++|+||||+++|+
T Consensus        42 ~e~~~~~~~~~grpTPL~~~~~Ls~~l-g~~IylK~E~lnptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~  120 (390)
T d1qopb_          42 AQFADLLKNYAGRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASAL  120 (390)
T ss_dssp             HHHHHHHHHTTCCSCCEEECHHHHTTS-SEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCchhhEhHhhhhhh-CCEEEEEEecCCcccccchhHHHHHHHHHhhcCCceeeeehhHHHHHHHHHH
Confidence            456778899999999999999999998 7899999999999999999999999999999999888888899999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV  159 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  159 (410)
                      +|+++|++|+||||+.++.+++.|+.+|+.|||+|+.++.++  +.++...+.+.+........|..++..+++||.+++
T Consensus       121 aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (390)
T d1qopb_         121 ASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIV  200 (390)
T ss_dssp             HHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHH
T ss_pred             HHHhccCceEEeecccccccchHHHHHHHhcCceEEEecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccc
Confidence            999999999999999888777889999999999999998663  888888888888777666778888888888887777


Q ss_pred             cccchhHHHHHHHhh-hhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239        160 RDFQSIIGYEIHQQL-NFNFYNKKYILACVGGGSNALGRPTPIYYCK  205 (410)
Q Consensus       160 ~~g~~ti~~EI~~q~-~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~  205 (410)
                      ..++.++|.|+.+|+ +..+..||+||+|+|+|+++.|++.++.+.+
T Consensus       201 ~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~~~  247 (390)
T d1qopb_         201 REFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDT  247 (390)
T ss_dssp             HHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTTCT
T ss_pred             cchhhhhcchhHHHHHHHcCCccceEEecccccchhhheeccccccc
Confidence            899999999998885 3346789999999999999999999987644

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.9e-37  Score=306.12  Aligned_cols=209  Identities=47%  Similarity=0.791  Sum_probs=188.3

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|.+|||+++++|++.+ +++||+|+|++|||||||+|++..++..|++.|.+++|+|+|+||||+++|++|+++|++|+
T Consensus        52 ~grpTPL~~~~~Ls~~l-g~~IylK~E~lnptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~  130 (390)
T d1qopb_          52 AGRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCR  130 (390)
T ss_dssp             TCCSCCEEECHHHHTTS-SEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCchhhEhHhhhhhh-CCEEEEEEecCCcccccchhHHHHHHHHHhhcCCceeeeehhHHHHHHHHHHHHHhccCceE
Confidence            46899999999999988 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      ||||+.++.++..|+.+|+.+||+|+.++.++  ++++..++.+.+.......+|...+..++++|+..+..++.++|.|
T Consensus       131 I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e  210 (390)
T d1qopb_         131 IYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEE  210 (390)
T ss_dssp             EEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHH
T ss_pred             EeecccccccchHHHHHHHhcCceEEEecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcch
Confidence            99998777666788999999999999998766  8888888888876665556777788888888887788999999999


Q ss_pred             HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCc
Q psy11239        353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRT  404 (410)
Q Consensus       353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~  404 (410)
                      +.+|+. ..|..||+||+|+|+|++++|++.+|++. .+++++++|.+..+.++
T Consensus       211 ~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~~~~~~~ig~ep~~~g~~~~  264 (390)
T d1qopb_         211 TKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETG  264 (390)
T ss_dssp             HHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTTCTTSEEEEEEEEETBGGGT
T ss_pred             hHHHHHHHcCCccceEEecccccchhhheecccccccceeEecccccccccccc
Confidence            999986 45789999999999999999999999876 89999999998776544

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=100.00  E-value=3e-36  Score=287.16  Aligned_cols=190  Identities=17%  Similarity=0.197  Sum_probs=161.9

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||+++++|++.. +++||+|+|++|||||||+|++.+++..+.+.|.   ...|+++|+||||+|+|++|+++|++|+
T Consensus         9 ~TPL~~~~~l~~~~-g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~   87 (292)
T d2bhsa1           9 NTPLVKLQRMGPDN-GSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMK   87 (292)
T ss_dssp             CCCEEECSSSSCCS-SCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEE
T ss_pred             CCceEECCccChhh-CCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCCceeeeecccchhHHHHHHHHhcCcceE
Confidence            69999999999888 6999999999999999999999999998887763   4567779999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCC--hhHHHhhhhhHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGY  351 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~g~  351 (410)
                      ||||+..++   .++++|+.+||+|+.++.+. ..++..++.+...+.  +.+|+       +||  ++++.+|+.++|.
T Consensus        88 i~~p~~~~~---~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~a~  155 (292)
T d2bhsa1          88 LLMPDNMSQ---ERRAAMRAYGAELILVTKEQGMEGARDLALEMANRG--EGKLL-------DQFNNPDNPYAHYTTTGP  155 (292)
T ss_dssp             EEEESCCCH---HHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHT--SSEEC-------CTTTCTHHHHHHHHTHHH
T ss_pred             eeeccCchh---hhhHHHHHhCCCcceeecccchHHHHHHHhhccccc--ccccc-------CCCchhcchhhHHHHHHH
Confidence            999986544   78899999999999997554 556666666655554  44554       555  2337789999999


Q ss_pred             HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239        352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR  403 (410)
Q Consensus       352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~  403 (410)
                      ||++|++   ..||++|+|+|+||+++|++.++++.  +++|++|||++++...
T Consensus       156 Ei~~q~~---~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~~~  206 (292)
T d2bhsa1         156 EIWQQTG---GRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIP  206 (292)
T ss_dssp             HHHHHTT---TCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCT
T ss_pred             HhHHhcC---CCCCcccccCCCccchhhhhhhhhhccCcceEEEeccccccccc
Confidence            9999995   57999999999999999999999865  9999999999988654

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.7e-36  Score=290.99  Aligned_cols=192  Identities=17%  Similarity=0.114  Sum_probs=159.6

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||+++++|.+.. +.+||+|+|++|||||||+|++.+++..+++.|.    ...|+++|+||||.++|++|+.+|++|
T Consensus        13 ~TPLv~~~~l~~~~-g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~   91 (320)
T d1z7wa1          13 NTPLVYLNNVAEGC-VGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKL   91 (320)
T ss_dssp             CCCEEECCGGGTTC-SSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCeEECCCccccc-CCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHHHHHhhccce
Confidence            69999999999888 6899999999999999999999999999988774    345667999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCCh--hHHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP--TIVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~t~g  350 (410)
                      ++|||+..+.   .|+++++.+||+|+.++... ..+...++.+...+. ++.+|+       ++|+  .++..|++|+|
T Consensus        92 ~iv~p~~~~~---~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~n~~~g~~t~~  160 (320)
T d1z7wa1          92 IITMPASMST---ERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKT-PNGYML-------QQFENPANPKIHYETTG  160 (320)
T ss_dssp             EEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC-TTEEEC-------CTTTCTHHHHHHHHTHH
T ss_pred             EEeehhhhhh---hhhhhhhccCcceEEeeccccccccchhHHHHHHhC-CCceec-------ccccccchHHHhhhhHH
Confidence            9999986554   88999999999999986443 344444444444444 234444       4442  23678999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT  404 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~  404 (410)
                      .||++|+.   ..||+||+|+|+||+++|++++|+..  .+++++|||.+++.+.+
T Consensus       161 ~EI~~q~~---~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s~~~~~  213 (320)
T d1z7wa1         161 PEIWKGTG---GKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSG  213 (320)
T ss_dssp             HHHHHHTT---TCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGT
T ss_pred             HHHHHhcc---CCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccccCCccccC
Confidence            99999994   57999999999999999999999864  99999999999998643

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.7e-37  Score=303.90  Aligned_cols=210  Identities=50%  Similarity=0.805  Sum_probs=173.1

Q ss_pred             hhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHH
Q psy11239          3 WFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATS   82 (410)
Q Consensus         3 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~   82 (410)
                      +|+++++.|.++||||+++++|++.+++++||+|+|++|||||||||++..+++.+++.+...+|+++|+||||+++|++
T Consensus        38 ~~~~~~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~a  117 (386)
T d1v8za1          38 QLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA  117 (386)
T ss_dssp             HHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchHHHHHHHHHhhcCCceeEeecccchHHHHHHHH
Confidence            45677888899999999999999998889999999999999999999999999999999988888888999999999999


Q ss_pred             HHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCcccccccc
Q psy11239         83 CCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR  160 (410)
Q Consensus        83 a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  160 (410)
                      |+++|++|+||||..++++++.|+.+++.|||+|+.++.+  ++.+++.++.+.+.....+..+......+.+++.....
T Consensus       118 aa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (386)
T d1v8za1         118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVR  197 (386)
T ss_dssp             HHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHH
T ss_pred             HHHcCCcccccccchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhh
Confidence            9999999999999887776678999999999999999865  47888888877766554444554444433333333346


Q ss_pred             ccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        161 DFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       161 ~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      .++.+++.||.+|+.. .+..||+||+|+|+|+++.|+..++.+.       +.++++..
T Consensus       198 ~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~~-------~~v~iigv  250 (386)
T d1v8za1         198 DFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVND-------KKVKLVGV  250 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTTC-------TTSEEEEE
T ss_pred             ccchhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhhc-------cCceEEEE
Confidence            7999999999988643 3567999999999999999997666442       25666643

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-36  Score=287.69  Aligned_cols=187  Identities=21%  Similarity=0.277  Sum_probs=165.0

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.+ +++||+|+|++|||||||+|++.+++..+.+.|.+++|+ +|+||||+|+|++|+++|++|+|||
T Consensus         7 ~TPl~~~~~L~~~~-g~~i~~K~E~~nptGSfK~R~a~~~~~~a~~~g~~~vv~-aSsGN~g~a~A~~a~~~G~~~~i~~   84 (319)
T d1p5ja_           7 KTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC-SSAGNAGMAAAYAARQLGVPATIVV   84 (319)
T ss_dssp             CCCEEEEHHHHHHH-TSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTCCEEEE-CCSSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eCCcEEhHHhHHHH-CCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHcCCCEEEE-eCCCcHHHHHHHHhhhccccceecc
Confidence            49999999999888 689999999999999999999999999999999888765 9999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQ  356 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q  356 (410)
                      |+..++   .+++.++.+||+|+.++ ++++++.+.+.+.+.++  +.++++      ++|++. +..|+.+++.||++|
T Consensus        85 p~~~~~---~k~~~~~~~Ga~v~~~~-~~~~~~~~~~~~~a~~~--~~~~~~------~~~~~~~~~~g~~~~~~Ei~~q  152 (319)
T d1p5ja_          85 PGTTPA---LTIERLKNEGATCKVVG-ELLDEAFELAKALAKNN--PGWVYI------PPFDDPLIWEGHASIVKELKET  152 (319)
T ss_dssp             CTTCCH---HHHHHHHHTTCEEEECC-SCHHHHHHHHHHHHHHS--TTEEEC------CSSCCHHHHHHHTHHHHHHHHH
T ss_pred             cccccc---ccccccccceecccccc-ccchhHHHHHHHHhhcc--Cccccc------ccccccccccccchhhhhhhcc
Confidence            986554   78899999999999985 55999999999988776  334443      555433 788999999999999


Q ss_pred             hhhcCCCCCEEEEccCchhHHHHHHHHHhcC---CCeEEEEccCCCCc
Q psy11239        357 LNFNFYNKKYILACVGGGSNALGIFYTFINS---NFKLVAIESGGISK  401 (410)
Q Consensus       357 ~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigVe~~g~~~  401 (410)
                      +   +..||++|+|+|+||+++|++.++++.   ++++++|||++++.
T Consensus       153 ~---~~~~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ve~~~~~~  197 (319)
T d1p5ja_         153 L---WEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHS  197 (319)
T ss_dssp             C---SSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCH
T ss_pred             c---cCCCceeeecccCCcchhhhHHHHHHhccCCeeeeecccccccc
Confidence            9   468999999999999999999999753   89999999999864

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8e-36  Score=284.32  Aligned_cols=186  Identities=26%  Similarity=0.261  Sum_probs=157.8

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC-CceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCCLLNLESIIY  276 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~-~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv  276 (410)
                      .|||+++++|     +.+||+|+|++|||||||+|++.+++..+.+.|. +..|+++|+||||.++|++|+.+|++|++|
T Consensus        10 ~TPL~~~~~l-----~~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~~~vv~~SsGN~g~a~A~~a~~~g~~~~i~   84 (293)
T d1o58a_          10 STPIVRLDSI-----DSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILT   84 (293)
T ss_dssp             CCCEEECTTT-----CTTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCcEECCCC-----CCEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCCcceEEecCcchhhHHHHhhhhccceeEee
Confidence            5999988766     4689999999999999999999999999988876 344566999999999999999999999999


Q ss_pred             EcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHHHHH
Q psy11239        277 IGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIGYEI  353 (410)
Q Consensus       277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~Ei  353 (410)
                      ||+..++   .|+.+++.+||+|+.++... ......++.+..++.  +.+|+       ++|++  ++..|++|++.||
T Consensus        85 ~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~t~~~Ei  152 (293)
T d1o58a_          85 MPETMSV---ERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET--GAHML-------NQFENPYNVYSHQFTTGPEI  152 (293)
T ss_dssp             EETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH--CCBCC-------CTTTCHHHHHHHHHTHHHHH
T ss_pred             ccccccH---HHeeccccCCcEEEEecCcchhhHHHHHHHHHHhcc--CCEEe-------eeccccceeeeccccHHHhh
Confidence            9986554   78999999999999986443 666667777777765  45555       66633  3778999999999


Q ss_pred             HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC---CCeEEEEccCCCCcCC
Q psy11239        354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFINS---NFKLVAIESGGISKKR  403 (410)
Q Consensus       354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigVe~~g~~~~~  403 (410)
                      ++|+.   ..||+||+|+|+||+++|++.+|++.   .+|||+|||++++.+.
T Consensus       153 ~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep~~~~~l~  202 (293)
T d1o58a_         153 LKQMD---YQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLS  202 (293)
T ss_dssp             HHHTT---TCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTT
T ss_pred             hhhcC---CCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEecCCCcccc
Confidence            99995   57999999999999999999999753   6999999999998764

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=6.9e-36  Score=292.53  Aligned_cols=196  Identities=14%  Similarity=0.128  Sum_probs=160.7

Q ss_pred             eccccccccccccccccCceeEEeecCCCCCc-hhhHHHHHHHHHHHHHcC-CCceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTG-AHKMNNSIAQSLLAKFLK-KKRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptg-S~K~R~a~~~~~~a~~~g-~~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      |.+|||+++ ++.... +++||+|+|++||+| |||||.+.+++..|.+.. .+.+|+++|+||||+|+|++|+.+|++|
T Consensus        93 ~~PTPLvrl-~l~~~~-G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~  170 (382)
T d1wkva1          93 GKPTPLVRS-RLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRA  170 (382)
T ss_dssp             SCSCCEEEC-CCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEEC-CCCCCC-CCEEEEEecCCCCCCCccHHHHHHHHHHHHHhccCCCCEEEEeCCcHHHHHHHHHHHHcCCCE
Confidence            468999996 455444 789999999999986 999999999988876543 3456788999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCC--hhHHHhhhhhHH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIG  350 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~g  350 (410)
                      +||||+..++   .|+++|+++||+|+.++... ..++..++.+.+++.  +.+|+       ++|  +.++..|++|++
T Consensus       171 ~Iv~P~~~~~---~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~--~~~~~-------~q~~N~~~~~~h~~ttg  238 (382)
T d1wkva1         171 RVYLPGAAEE---FGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNE--GFVHV-------NQFYNDANFEAHMRGTA  238 (382)
T ss_dssp             EEEEETTSCH---HHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHH--CCEEC-------CTTTCHHHHHHHHHTHH
T ss_pred             EEEeeccccc---cccccccccCcceeecCcchhhHHHHHHHhhhcccc--Ccccc-------ccccccceeeehhhcch
Confidence            9999976544   78899999999999986433 445566666666654  34443       444  234789999999


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCcCCcc
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISKKRTA  405 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~~~~~  405 (410)
                      .||++|++..+..+|+||+|+|+||+++|++.++++  +++|||+|||.+++...|.
T Consensus       239 ~EI~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~  295 (382)
T d1wkva1         239 REIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGI  295 (382)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTC
T ss_pred             HHHHHHhhcCCCceeEEEEecccccccccceeehhhhCCccceeEeccccccccccc
Confidence            999999986677899999999999999999999985  4889999999998866543

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.8e-36  Score=296.64  Aligned_cols=210  Identities=54%  Similarity=0.905  Sum_probs=181.4

Q ss_pred             eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|.+|||+++++|++.+++++||+|+|++|||||||+|++..+++.|++.|.+++|+++|+||||+++|++|+++|++|+
T Consensus        47 ~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~~~  126 (386)
T d1v8za1          47 AGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVD  126 (386)
T ss_dssp             TCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchHHHHHHHHHhhcCCceeEeecccchHHHHHHHHHHHcCCccc
Confidence            45799999999999988779999999999999999999999999999999998889989999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      ||||..++++++.|+.+++.+||+|+.++.+.  +.++..++.+..........+......++++++.++..++.+++.|
T Consensus       127 i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  206 (386)
T d1v8za1         127 IYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGRE  206 (386)
T ss_dssp             EEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhhccchhhhhh
Confidence            99997666656678999999999999997655  8888888877765553344555555555566666678899999999


Q ss_pred             HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCc
Q psy11239        353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRT  404 (410)
Q Consensus       353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~  404 (410)
                      |.+|+. ..|..||+||+|+|+|++++|++.++++. ++++|+|||.++....+
T Consensus       207 i~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~~~~v~iigvep~g~~~~~~  260 (386)
T d1v8za1         207 AKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESG  260 (386)
T ss_dssp             HHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTTCTTSEEEEEEEEETBGGGT
T ss_pred             HHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhhccCceEEEEecCccccccc
Confidence            999987 45788999999999999999999888765 99999999998876554

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-35  Score=282.25  Aligned_cols=191  Identities=17%  Similarity=0.145  Sum_probs=162.0

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC-----CceEEecCchHHHHHHHHHHHHcCCc
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-----KRIICETGAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~-----~~~v~~~ssGN~g~a~A~~a~~~G~~  272 (410)
                      .|||+++++|.+.. +++||+|+|++|||||||+|++.+++..+.+.|.     ...|+++|+||||.++|++|+.+|++
T Consensus         9 ~TPLi~~~~l~~~~-g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a~~~g~~   87 (302)
T d1ve1a1           9 KTPVVRLAKVVEPD-MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYR   87 (302)
T ss_dssp             CCCEEECCSSSCTT-SCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCE
T ss_pred             CCCeEECcccchhh-CCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhhhccCcc
Confidence            59999999998887 6899999999999999999999999998887763     35667799999999999999999999


Q ss_pred             EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhH
Q psy11239        273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSII  349 (410)
Q Consensus       273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~  349 (410)
                      |++|||+..++   .++..++.+|++++.+.... ..+...++.+...+.  +.+|+       +||++  ++..|++|+
T Consensus        88 ~~iv~p~~~~~---~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~t~  155 (302)
T d1ve1a1          88 LILTMPAQMSE---ERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL--GAFMP-------DQFKNPANVRAHYETT  155 (302)
T ss_dssp             EEEEEETTCCH---HHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH--TCBCC-------CTTTCHHHHHHHHHTH
T ss_pred             eeEeeecccch---heeehhhhhhhcchhcccccchHHHHHHhhhhhhcc--Ccccc-------ccCccchhHHHHHHHH
Confidence            99999986654   77889999999999986554 555566665655554  44544       67633  378899999


Q ss_pred             HHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239        350 GYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT  404 (410)
Q Consensus       350 g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~  404 (410)
                      |.||++|++   ..||+||+|+|+||+++|++.+|++.  +++||||||++++.+..
T Consensus       156 ~~EI~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~~~~~~~~~  209 (302)
T d1ve1a1         156 GPELYEALE---GRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSG  209 (302)
T ss_dssp             HHHHHHHTT---TCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTT
T ss_pred             HHHHHHHcC---CCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEecccceeee
Confidence            999999996   47999999999999999999999875  89999999999886643

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=100.00  E-value=1.2e-35  Score=283.06  Aligned_cols=175  Identities=17%  Similarity=0.152  Sum_probs=143.1

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc---CCceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~---~~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      .+++|||+++++|++.+ +++||+|+|++|||||||||++...+..+.+.+   +..+|+++||||||+|+|++|+++|+
T Consensus         6 ~IG~TPL~~~~~l~~~~-g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~   84 (292)
T d2bhsa1           6 TIGNTPLVKLQRMGPDN-GSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGY   84 (292)
T ss_dssp             GSSCCCEEECSSSSCCS-SCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             ccCCCceEECCccChhh-CCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCCceeeeecccchhHHHHHHHHhcCc
Confidence            56799999999999998 699999999999999999998877666666655   34577778999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-HHHHHHHHHHHHhhcccCCcccccccccCcccccc--ccccchh
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDFQSI  165 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~g~~t  165 (410)
                      +|+||||+.++   +.|+++|+.|||+|++++.+. ..++..++.+...+.  +.       .+.+||+++  ...|+++
T Consensus        85 ~~~i~~p~~~~---~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~  152 (292)
T d2bhsa1          85 RMKLLMPDNMS---QERRAAMRAYGAELILVTKEQGMEGARDLALEMANRG--EG-------KLLDQFNNPDNPYAHYTT  152 (292)
T ss_dssp             EEEEEEESCCC---HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHT--SS-------EECCTTTCTHHHHHHHHT
T ss_pred             ceEeeeccCch---hhhhHHHHHhCCCcceeecccchHHHHHHHhhccccc--cc-------cccCCCchhcchhhHHHH
Confidence            99999999988   589999999999999998443 455555555544443  12       235667665  3688999


Q ss_pred             HHHHHHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239        166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIY  202 (410)
Q Consensus       166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~  202 (410)
                      +++||++|++   ..||+||+|+|+||++.|+...+.
T Consensus       153 ~a~Ei~~q~~---~~~d~vv~~~G~Gg~~~G~~~~~k  186 (292)
T d2bhsa1         153 TGPEIWQQTG---GRITHFVSSMGTTGTITGVSRFMR  186 (292)
T ss_dssp             HHHHHHHHTT---TCCCEEEEECSSSHHHHHHHHHHH
T ss_pred             HHHHhHHhcC---CCCCcccccCCCccchhhhhhhhh
Confidence            9999999964   358999999999999999966554

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=289.21  Aligned_cols=195  Identities=17%  Similarity=0.163  Sum_probs=156.4

Q ss_pred             ccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239        198 PTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLES  273 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~  273 (410)
                      .|||+++++|++.++ +++||+|+|++||+||||+|++.+++..|.+.|.   ...|+++|+||||+|+|++|+++|++|
T Consensus        44 ~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~  123 (355)
T d1jbqa_          44 DTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRC  123 (355)
T ss_dssp             CCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccCceEEEecccchhhHHHHHHHhccCCe
Confidence            899999999998875 3699999999999999999999999999988763   455677999999999999999999999


Q ss_pred             EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HH---HHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhH
Q psy11239        274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LK---EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSII  349 (410)
Q Consensus       274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  349 (410)
                      +||||...++   .|+++|+.+||+|+.++... ..   +......+...+.  ...++..+..+    +.+..+||+|+
T Consensus       124 ~iv~p~~~~~---~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~ag~~t~  194 (355)
T d1jbqa_         124 IIVMPEKMSS---EKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEI--PNSHILDQYRN----ASNPLAHYDTT  194 (355)
T ss_dssp             EEEECSCCCH---HHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHS--TTEECCCTTTC----THHHHHHHHTH
T ss_pred             EEEeeccchH---HHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhc--cccccccccCc----ccchhhhcccc
Confidence            9999986554   78999999999999986432 22   2233333444443  23333322211    22367899999


Q ss_pred             HHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239        350 GYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT  404 (410)
Q Consensus       350 g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~  404 (410)
                      +.||++|++   ..||+||+|+|+||+++|++.+|++.  ++||++|||+++.....
T Consensus       195 ~~EI~~ql~---~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~  248 (355)
T d1jbqa_         195 ADEILQQCD---GKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEP  248 (355)
T ss_dssp             HHHHHHHHT---TCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSS
T ss_pred             hhhhhhhcC---CCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccCCccccc
Confidence            999999995   57999999999999999999999864  99999999999986543

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.1e-36  Score=293.65  Aligned_cols=183  Identities=17%  Similarity=0.211  Sum_probs=152.4

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ..++|||+++++|++.+ +.+||+|+|++|||||||||++...+..+.+.+....|+++|+||||+++|++|+.+|++|+
T Consensus        18 ~i~~TPl~~~~~l~~~~-g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~   96 (318)
T d1v71a1          18 FANKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAK   96 (318)
T ss_dssp             TSCCCCEECCHHHHHHH-TSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHHHCEEECCSSHHHHHHHHHHHHTTCCEE
T ss_pred             cCCCCCEEEchhhhHHH-CCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhccccceeeeeccchhhHHHHHhhccccccee
Confidence            45799999999999998 69999999999999999999887665555444545567778999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||++++   +.|+++|+.|||+|+.++ ++++++...+.+.+++.  +       ..+.+||++| .+.||.|+++||
T Consensus        97 i~~p~~~~---~~k~~~l~~~Ga~vi~~~-~~~~~~~~~a~~~a~~~--g-------~~~~~~~~~~~~~~g~~t~~~Ei  163 (318)
T d1v71a1          97 IIMPLDAP---EAKVAATKGYGGQVIMYD-RYKDDREKMAKEISERE--G-------LTIIPPYDHPHVLAGQGTAAKEL  163 (318)
T ss_dssp             EEEETTCC---HHHHHHHHHTTCEEEEEC-TTTTCHHHHHHHHHHHH--T-------CBCCCSSSSHHHHHHHTHHHHHH
T ss_pred             eccccccc---HHHHHHHHHcCCcEEecc-CCchHHHHHHHHHHHhc--C-------CEecCCccccccccccchHHHHH
Confidence            99999988   589999999999999997 67788888888877764  1       2346778777 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ++|+.    .+|+||+|+|+||+++|+...+..      ..+..+++.
T Consensus       164 ~~q~~----~~d~vvv~~G~GG~~~Gi~~~~~~------~~~~~~ii~  201 (318)
T d1v71a1         164 FEEVG----PLDALFVCLGGGGLLSGSALAARH------FAPNCEVYG  201 (318)
T ss_dssp             HHHHC----CCSEEEEECSSSHHHHHHHHHHHH------HCTTCEEEE
T ss_pred             HHhcC----CCCEEEEcCCchHHHHHHHHHHHh------hCCCceeec
Confidence            99963    489999999999999999665533      234566663

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.7e-36  Score=287.09  Aligned_cols=186  Identities=15%  Similarity=0.076  Sum_probs=146.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC----CceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~----~~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      ++++|||+++++|++.+ +.+||+|+|++|||||||||++...+..+.+.+.    ...|+++||||||+|+|++|+.+|
T Consensus        10 ~iG~TPLv~~~~l~~~~-g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g   88 (320)
T d1z7wa1          10 LIGNTPLVYLNNVAEGC-VGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKG   88 (320)
T ss_dssp             GSSCCCEEECCGGGTTC-SSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             hcCCCCeEECCCccccc-CCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHHHHHhhc
Confidence            46799999999999988 5899999999999999999998877777777653    245666799999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-HHHHHHHHHHHHhhcccCCcccccccccCcccccc--ccccch
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDFQS  164 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~g~~  164 (410)
                      ++|+||||+.++   +.|+++|+.|||+|+.++... ..+...++.+...+.+ + .      .+.+||+++  ...|++
T Consensus        89 ~~~~iv~p~~~~---~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~-~-~------~~~~~~~~~~n~~~g~~  157 (320)
T d1z7wa1          89 YKLIITMPASMS---TERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTP-N-G------YMLQQFENPANPKIHYE  157 (320)
T ss_dssp             CEEEEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCT-T-E------EECCTTTCTHHHHHHHH
T ss_pred             cceEEeehhhhh---hhhhhhhhccCcceEEeeccccccccchhHHHHHHhCC-C-c------eecccccccchHHHhhh
Confidence            999999999998   589999999999999997332 3333344444444331 2 2      235566655  367999


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      |+++||++|+.   ..||+||+|+|+||+++|+...|...      .+..+++.
T Consensus       158 t~~~EI~~q~~---~~~D~vv~~vGgGg~~~Gi~~~~k~~------~~~~~~ig  202 (320)
T d1z7wa1         158 TTGPEIWKGTG---GKIDGFVSGIGTGGTITGAGKYLKEQ------NANVKLYG  202 (320)
T ss_dssp             THHHHHHHHTT---TCCCEEEEECSSSHHHHHHHHHHHHH------CTTCEEEE
T ss_pred             hHHHHHHHhcc---CCCCEEEeCCCCCcccchhhhhhhhh------hcceeeec
Confidence            99999999963   35899999999999999997766542      23566663

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.1e-36  Score=287.26  Aligned_cols=175  Identities=21%  Similarity=0.231  Sum_probs=145.2

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      .+++|||+++++|++.+ +.+||+|+|++|||||||||.++.++.   .......|+++||||||+|+|++|+.+|++|+
T Consensus        16 ~ig~TPL~~~~~L~~~~-g~~i~~K~E~~nPtGSfKdRgA~~~~~---~~~~~~~vv~aSsGN~g~a~A~~aa~~G~~~~   91 (310)
T d1ve5a1          16 YTHRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSKAL---ALENPKGLLAVSSGNHAQGVAYAAQVLGVKAL   91 (310)
T ss_dssp             GSCCCCEEECHHHHHHT-TSEEEEEEGGGSGGGBTHHHHHHHHHH---HSSSCCCEEEECSSHHHHHHHHHHHHHTCCEE
T ss_pred             cCCCCceeEhhhhhHHh-CCEEEEEeCCCCCcCCcHHHHHHHHHH---HhcccCCccccCchhhHHHHHHHHHHcCCeEE
Confidence            45699999999999998 689999999999999999998755432   23333445567999999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI  170 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI  170 (410)
                      ||||+.++   +.|+++|+.|||+|+.++ ++++++.+.+.+..++.  +.       .+.+||++| .+.|+++++.||
T Consensus        92 i~vp~~~~---~~~~~~~~~~Ga~vi~~~-~~~~~~~~~a~~~~~~~--~~-------~~~~~~~np~~~~g~~t~~~Ei  158 (310)
T d1ve5a1          92 VVMPEDAS---PYKKACARAYGAEVVDRG-VTAKNREEVARALQEET--GY-------ALIHPFDDPLVIAGQGTAGLEL  158 (310)
T ss_dssp             EECCCC-----CCHHHHHHHTTCEEECTT-CCTTTHHHHHHHHHHHH--CC-------EECCSSSSHHHHHHHHHHHHHH
T ss_pred             Eeecccch---HHHHHHHhhhccccceee-ccchhHHHHHHHHHHhc--CC-------cCCCCCCChhhHhhhhhhHHHH
Confidence            99999988   589999999999999987 67788888888877664  12       346788777 478999999999


Q ss_pred             HHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      ++|+...+..||++++|+|+||++.|+...+.+
T Consensus       159 ~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~  191 (310)
T d1ve5a1         159 LAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKA  191 (310)
T ss_dssp             HHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceeeeeeccCcchhhhhhhhhhhc
Confidence            999876667899999999999999999666543

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.5e-35  Score=290.09  Aligned_cols=187  Identities=14%  Similarity=0.135  Sum_probs=147.7

Q ss_pred             CCCCcCccccccccccCCceEEEeeCCCCCCC-chhhhHHHHHHHHHHH-hcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTG-AHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptG-S~K~R~~~~~~~~~~~-~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      ++||||++++ +.... +.+||+|+|++|||| |||||.+...+..+.+ .+++.+|+++||||||+|+|++|+.+|+||
T Consensus        93 ~~PTPLvrl~-l~~~~-G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~  170 (382)
T d1wkva1          93 GKPTPLVRSR-LQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRA  170 (382)
T ss_dssp             SCSCCEEECC-CCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEECC-CCCCC-CCEEEEEecCCCCCCCccHHHHHHHHHHHHHhccCCCCEEEEeCCcHHHHHHHHHHHHcCCCE
Confidence            6899999984 55554 789999999999986 9999987766554433 334457888899999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCcccccc--ccccchhHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDFQSIIG  167 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~g~~ti~  167 (410)
                      +||||+.++   +.|+++|+.|||+|+.++.. +..++..++.+.+++.  + +      .+.+||+|+  ...|++|++
T Consensus       171 ~Iv~P~~~~---~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~--~-~------~~~~q~~N~~~~~~h~~ttg  238 (382)
T d1wkva1         171 RVYLPGAAE---EFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNE--G-F------VHVNQFYNDANFEAHMRGTA  238 (382)
T ss_dssp             EEEEETTSC---HHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHH--C-C------EECCTTTCHHHHHHHHHTHH
T ss_pred             EEEeecccc---ccccccccccCcceeecCcchhhHHHHHHHhhhcccc--C-c------cccccccccceeeehhhcch
Confidence            999999988   58999999999999999743 3455556666665543  1 2      235677666  368899999


Q ss_pred             HHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      .||++|+...+..+|+||+|+|+||++.|+...+.+      ..+.++++.-
T Consensus       239 ~EI~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~------~~p~vkiigV  284 (382)
T d1wkva1         239 REIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQS------VDPSIRAVLV  284 (382)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHH------HCTTCEEEEE
T ss_pred             HHHHHHhhcCCCceeEEEEecccccccccceeehhh------hCCccceeEe
Confidence            999999876667899999999999999999665543      3346677643

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.4e-35  Score=285.78  Aligned_cols=185  Identities=18%  Similarity=0.225  Sum_probs=161.0

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.+ +.+||+|+|++||+||||+|++.+++..+.+.+....|+++|+||||+++|++|+.+|++|+|||
T Consensus        21 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~   99 (318)
T d1v71a1          21 KTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIM   99 (318)
T ss_dssp             CCCEECCHHHHHHH-TSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHHHCEEECCSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEchhhhHHH-CCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhccccceeeeeccchhhHHHHHhhcccccceeecc
Confidence            79999999999888 79999999999999999999999998877766666667779999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQ  356 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q  356 (410)
                      |++.++   .++.+|+.+||+|+.++ ++++++...+.+..++.  +.+|+       +||++. ...|+.|++.||++|
T Consensus       100 p~~~~~---~k~~~l~~~Ga~vi~~~-~~~~~~~~~a~~~a~~~--g~~~~-------~~~~~~~~~~g~~t~~~Ei~~q  166 (318)
T d1v71a1         100 PLDAPE---AKVAATKGYGGQVIMYD-RYKDDREKMAKEISERE--GLTII-------PPYDHPHVLAGQGTAAKELFEE  166 (318)
T ss_dssp             ETTCCH---HHHHHHHHTTCEEEEEC-TTTTCHHHHHHHHHHHH--TCBCC-------CSSSSHHHHHHHTHHHHHHHHH
T ss_pred             cccccH---HHHHHHHHcCCcEEecc-CCchHHHHHHHHHHHhc--CCEec-------CCccccccccccchHHHHHHHh
Confidence            986654   78899999999999985 45777777788877776  45554       566433 678999999999999


Q ss_pred             hhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239        357 LNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS  400 (410)
Q Consensus       357 ~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~  400 (410)
                      +.    .+|+||+|+|+||+++|++.+++..  +++|++|+|+++.
T Consensus       167 ~~----~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~  208 (318)
T d1v71a1         167 VG----PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGN  208 (318)
T ss_dssp             HC----CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGC
T ss_pred             cC----CCCEEEEcCCchHHHHHHHHHHHhhCCCceeecccccchh
Confidence            94    6999999999999999999999864  9999999998765

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=286.09  Aligned_cols=174  Identities=21%  Similarity=0.206  Sum_probs=151.0

Q ss_pred             CCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEE
Q psy11239         13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII   92 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~i   92 (410)
                      ..+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+..++|+ +||||||+|+|++|+++|+||+|
T Consensus         5 ~~~TPl~~~~~L~~~~-g~~i~~K~E~~nptGSfK~R~a~~~~~~a~~~g~~~vv~-aSsGN~g~a~A~~a~~~G~~~~i   82 (319)
T d1p5ja_           5 HVKTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC-SSAGNAGMAAAYAARQLGVPATI   82 (319)
T ss_dssp             SCCCCEEEEHHHHHHH-TSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTCCEEEE-CCSSHHHHHHHHHHHHHTCCEEE
T ss_pred             ceeCCcEEhHHhHHHH-CCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHcCCCEEEE-eCCCcHHHHHHHHhhhcccccee
Confidence            3479999999999998 589999999999999999999887777788777766555 69999999999999999999999


Q ss_pred             EeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHHH
Q psy11239         93 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH  171 (410)
Q Consensus        93 v~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~  171 (410)
                      |||+.++   +.|++.|+.+||+|+.++ ++++++.+.+.+++.+++ + +      .+.+||+++ .++|+++++.||+
T Consensus        83 ~~p~~~~---~~k~~~~~~~Ga~v~~~~-~~~~~~~~~~~~~a~~~~-~-~------~~~~~~~~~~~~~g~~~~~~Ei~  150 (319)
T d1p5ja_          83 VVPGTTP---ALTIERLKNEGATCKVVG-ELLDEAFELAKALAKNNP-G-W------VYIPPFDDPLIWEGHASIVKELK  150 (319)
T ss_dssp             EECTTCC---HHHHHHHHHTTCEEEECC-SCHHHHHHHHHHHHHHST-T-E------EECCSSCCHHHHHHHTHHHHHHH
T ss_pred             ccccccc---cccccccccceecccccc-ccchhHHHHHHHHhhccC-c-c------cccccccccccccccchhhhhhh
Confidence            9999988   589999999999999998 789999999988887652 1 1      235777766 5799999999999


Q ss_pred             HhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        172 QQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       172 ~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                      +|+.   ..||++|+|+|+||+++|+...+.+
T Consensus       151 ~q~~---~~~d~vv~~vg~Gg~~~g~~~~~~~  179 (319)
T d1p5ja_         151 ETLW---EKPGAIALSVGGGGLLCGVVQGLQE  179 (319)
T ss_dssp             HHCS---SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred             cccc---CCCceeeecccCCcchhhhHHHHHH
Confidence            9953   4699999999999999999877754

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-35  Score=287.65  Aligned_cols=187  Identities=20%  Similarity=0.163  Sum_probs=144.0

Q ss_pred             CCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc---CCceEEEeCccHHHHHHHHHHHHcC
Q psy11239         12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~---~~~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      .+++|||+++++|++.+| +++||+|+|++|||||||||++...+..+.+.+   +...|+++||||||+|+|++|+++|
T Consensus        41 ~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G  120 (355)
T d1jbqa_          41 KIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRG  120 (355)
T ss_dssp             GSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             hcCCCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccCceEEEecccchhhHHHHHHHhcc
Confidence            457999999999999986 469999999999999999999877777777765   3456777899999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-H---HHHHHHHHHHHhhcccCCcccccccccCcccccc--ccc
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-L---KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRD  161 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~  161 (410)
                      ++|+||||..++   +.|+++|+.|||+|+.++... .   .+......+...+. ...+|       .++++++  .++
T Consensus       121 i~~~iv~p~~~~---~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~a  189 (355)
T d1jbqa_         121 YRCIIVMPEKMS---SEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEI-PNSHI-------LDQYRNASNPLA  189 (355)
T ss_dssp             CEEEEEECSCCC---HHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHS-TTEEC-------CCTTTCTHHHHH
T ss_pred             CCeEEEeeccch---HHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhc-ccccc-------ccccCcccchhh
Confidence            999999999988   589999999999999987332 1   12223333333333 11222       2222222  468


Q ss_pred             cchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        162 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       162 g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      ||+|+++||++|++   ..||+||+|+|+||+++|+...|...      .+.++|+.
T Consensus       190 g~~t~~~EI~~ql~---~~~d~vv~~vG~GG~~~Gi~~~lk~~------~~~~kii~  237 (355)
T d1jbqa_         190 HYDTTADEILQQCD---GKLDMLVASVGTGGTITGIARKLKEK------CPGCRIIG  237 (355)
T ss_dssp             HHHTHHHHHHHHHT---TCCCEEEEECSSSHHHHHHHHHHHHH------CTTCEEEE
T ss_pred             hcccchhhhhhhcC---CCCCeeEecccCCchHHHHHHHHhhc------CCcceEEe
Confidence            99999999999974   25899999999999999997776542      23567764

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-34  Score=276.94  Aligned_cols=185  Identities=17%  Similarity=0.128  Sum_probs=149.6

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc-----CCceEEEeCccHHHHHHHHHHHHc
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK-----KKRIICETGAGMHGVSTATSCCLL   86 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~-----~~~~v~~~ssGN~g~a~A~~a~~~   86 (410)
                      .+++|||+++++|++.+ +++||+|+|++|||||||||++...+..+.+.+     +...|+++||||||.|+|++|+.+
T Consensus         6 ~ig~TPLi~~~~l~~~~-g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a~~~   84 (302)
T d1ve1a1           6 AIGKTPVVRLAKVVEPD-MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASR   84 (302)
T ss_dssp             GCCCCCEEECCSSSCTT-SCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCeEECcccchhh-CCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhhhcc
Confidence            45689999999999887 589999999999999999999887777776664     235777789999999999999999


Q ss_pred             CCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-HHHHHHHHHHHHhhcccCCcccccccccCcccccc--ccccc
Q psy11239         87 NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDFQ  163 (410)
Q Consensus        87 G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~g~  163 (410)
                      |++|+||||+.++   +.|+..++.+|++++.+.... ..+...++.+...+.         +..+++||+++  ...|+
T Consensus        85 g~~~~iv~p~~~~---~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  152 (302)
T d1ve1a1          85 GYRLILTMPAQMS---EERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL---------GAFMPDQFKNPANVRAHY  152 (302)
T ss_dssp             TCEEEEEEETTCC---HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH---------TCBCCCTTTCHHHHHHHH
T ss_pred             CcceeEeeecccc---hheeehhhhhhhcchhcccccchHHHHHHhhhhhhcc---------CccccccCccchhHHHHH
Confidence            9999999999988   489999999999999998443 444444444444433         12347888776  36789


Q ss_pred             hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      +|+++||++|++   ..||+||+|+|+||+++|+...|...      .+.++|+.
T Consensus       153 ~t~~~EI~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~~~~------~~~~~iig  198 (302)
T d1ve1a1         153 ETTGPELYEALE---GRIDAFVYGSGTGGTITGVGRYLKER------IPHVKVIA  198 (302)
T ss_dssp             HTHHHHHHHHTT---TCCSEEEEECSSSHHHHHHHHHHHTT------CTTCEEEE
T ss_pred             HHHHHHHHHHcC---CCCCeEEEeecCcHHHHHHHHHHHhc------CCCCEEEE
Confidence            999999999964   25899999999999999997776542      24567774

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.9e-35  Score=283.01  Aligned_cols=187  Identities=24%  Similarity=0.279  Sum_probs=159.6

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.+ +.+||+|+|++||+||||+|++.+++..+.+.+....|+++|+||||.++|++|+.+|++|++||
T Consensus        27 ~TPL~~~~~L~~~l-g~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~  105 (331)
T d1tdja1          27 VTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVM  105 (331)
T ss_dssp             CCCEEECHHHHHHT-TSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEEC
T ss_pred             CCceeEHHHhhHHH-CCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeec
Confidence            79999999999988 68999999999999999999999998876655554545669999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQ  356 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q  356 (410)
                      |+..+.   .++.+|+.+||+|+.++ +++++....+.+..++.  +.+|.       ++|++. +..|+.|++.||++|
T Consensus       106 p~~~~~---~k~~~l~~~Ga~vi~~~-~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~g~~t~~~Ei~~q  172 (331)
T d1tdja1         106 PTATAD---IKVDAVRGFGGEVLLHG-ANFDEAKAKAIELSQQQ--GFTWV-------PPFDHPMVIAGQGTLALELLQQ  172 (331)
T ss_dssp             CSSCCH---HHHHHHHHHSCEEECCC-SSHHHHHHHHHHHHHHH--CCEEC-------CSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccchh---HHHHHHHhcCCEEEEcC-cccccchhhhhhhhhcC--CCccc-------cccCChHHhhhhhhHHHHHHHh
Confidence            986554   78899999999999874 44777777777776665  44444       455333 678999999999999


Q ss_pred             hhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        357 LNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       357 ~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      ..    .||+||+|+|+||+++|++.+|++.  ++|||+|||++++.+
T Consensus       173 ~~----~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~~~~~~~  216 (331)
T d1tdja1         173 DA----HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACL  216 (331)
T ss_dssp             CT----TCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHH
T ss_pred             cC----CCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecccccchH
Confidence            84    6999999999999999999999864  999999999998754

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-35  Score=287.09  Aligned_cols=190  Identities=23%  Similarity=0.257  Sum_probs=154.2

Q ss_pred             hhhhcCC---CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239          5 DLFYNPK---KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT   81 (410)
Q Consensus         5 ~~~~~~~---~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~   81 (410)
                      ..|++..   ..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+....+.++...|+++|+||||+|+|+
T Consensus        14 ~~i~~~~v~~~~~~TPL~~~~~L~~~l-g~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~~~~vv~assGN~g~a~A~   92 (331)
T d1tdja1          14 RAVLRAPVYEAAQVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAF   92 (331)
T ss_dssp             HHHHHCCGGGTCCCCCEEECHHHHHHT-TSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSCSSSCEEEECSSSHHHHHH
T ss_pred             HHHHhcccceeccCCceeEHHHhhHHH-CCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCCCCeeeecccchhHHHHHH
Confidence            3455443   37899999999999999 6899999999999999999987666554444444555666799999999999


Q ss_pred             HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-cc
Q psy11239         82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VR  160 (410)
Q Consensus        82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~  160 (410)
                      +|+.+|++|+||||+..+   +.|.++|+.|||+|+.++ +++++....+.+..++.  + +      .+.+||++| .+
T Consensus        93 ~a~~~g~~~~i~~p~~~~---~~k~~~l~~~Ga~vi~~~-~~~~~~~~~~~~~~~~~--~-~------~~~~~~~~~~~~  159 (331)
T d1tdja1          93 SSARLGVKALIVMPTATA---DIKVDAVRGFGGEVLLHG-ANFDEAKAKAIELSQQQ--G-F------TWVPPFDHPMVI  159 (331)
T ss_dssp             HHHHTTCCEEEECCSSCC---HHHHHHHHHHSCEEECCC-SSHHHHHHHHHHHHHHH--C-C------EECCSSCCHHHH
T ss_pred             hhccccccceeeccccch---hHHHHHHHhcCCEEEEcC-cccccchhhhhhhhhcC--C-C------ccccccCChHHh
Confidence            999999999999999988   589999999999999987 67788777777766654  2 2      236777776 57


Q ss_pred             ccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239        161 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL  218 (410)
Q Consensus       161 ~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~  218 (410)
                      .||.|++.||++|..    .||+||+|+|+||+++|+...|.+      ..+.++|+.
T Consensus       160 ~g~~t~~~Ei~~q~~----~~D~vv~~~G~GG~~aG~~~~~~~------~~~~~~ii~  207 (331)
T d1tdja1         160 AGQGTLALELLQQDA----HLDRVFVPVGGGGLAAGVAVLIKQ------LMPQIKVIA  207 (331)
T ss_dssp             HHHHHHHHHHHHHCT----TCCEEEEECSSSHHHHHHHHHHHH------HCTTCEEEE
T ss_pred             hhhhhHHHHHHHhcC----CCCEEEEeCChhHHHHHHHHHHHH------hCCCcEEEE
Confidence            899999999999953    489999999999999999766654      234677774

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.1e-34  Score=273.19  Aligned_cols=183  Identities=26%  Similarity=0.206  Sum_probs=146.5

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC-CceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCCLLNLES   90 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~-~~~v~~~ssGN~g~a~A~~a~~~G~~~   90 (410)
                      .+++|||+++++|     +.+||+|+|++|||||||||++...+..+.+.+. +..|+++||||||+|+|++|+.+|++|
T Consensus         7 ~ig~TPL~~~~~l-----~~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~~~vv~~SsGN~g~a~A~~a~~~g~~~   81 (293)
T d1o58a_           7 LIGSTPIVRLDSI-----DSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRV   81 (293)
T ss_dssp             HSCCCCEEECTTT-----CTTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTCCE
T ss_pred             hcCCCCcEECCCC-----CCEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCCcceEEecCcchhhHHHHhhhhcccee
Confidence            3468999998765     4679999999999999999999888877777765 234566799999999999999999999


Q ss_pred             EEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCcccccc--ccccchhHH
Q psy11239         91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI--VRDFQSIIG  167 (410)
Q Consensus        91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~g~~ti~  167 (410)
                      +||||+.++   +.|+++|+.|||+|+.++.. +...+..++.+.+++.+         ..+.+||+++  ...|++|++
T Consensus        82 ~i~~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~t~~  149 (293)
T d1o58a_          82 ILTMPETMS---VERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETG---------AHMLNQFENPYNVYSHQFTTG  149 (293)
T ss_dssp             EEEEETTSC---HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHC---------CBCCCTTTCHHHHHHHHHTHH
T ss_pred             Eeecccccc---HHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhccC---------CEEeeeccccceeeeccccHH
Confidence            999999988   58999999999999998732 25556666667666541         1346777766  468899999


Q ss_pred             HHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239        168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK  219 (410)
Q Consensus       168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K  219 (410)
                      .||++|+.   ..||+||+|+|+||+++|+..+|.+...     .+.+++..
T Consensus       150 ~Ei~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~-----~~~~ii~v  193 (293)
T d1o58a_         150 PEILKQMD---YQIDAFVAGVGTGGTISGVGRVLKGFFG-----NGVKIVAV  193 (293)
T ss_dssp             HHHHHHTT---TCCSEEEEECSSSHHHHHHHHHHHHHHG-----GGSEEEEE
T ss_pred             HhhhhhcC---CCCCEEEEecCcchhHHHHHHHHHHHCC-----CCCeEEEE
Confidence            99999964   2589999999999999999887754221     14677754

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-34  Score=275.43  Aligned_cols=188  Identities=19%  Similarity=0.231  Sum_probs=158.3

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI  277 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~  277 (410)
                      .|||+++++|++.+ +.+||+|+|++|||||||||+++++++.+.   .+..|+++|+||||.|+|++|+++|++|+|||
T Consensus        19 ~TPL~~~~~L~~~~-g~~i~~K~E~~nPtGSfKdRgA~~~~~~~~---~~~~vv~aSsGN~g~a~A~~aa~~G~~~~i~v   94 (310)
T d1ve5a1          19 RTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSKALALE---NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVM   94 (310)
T ss_dssp             CCCEEECHHHHHHT-TSEEEEEEGGGSGGGBTHHHHHHHHHHHSS---SCCCEEEECSSHHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCceeEhhhhhHHh-CCEEEEEeCCCCCcCCcHHHHHHHHHHHhc---ccCCccccCchhhHHHHHHHHHHcCCeEEEee
Confidence            79999999998888 689999999999999999999987765432   23335679999999999999999999999999


Q ss_pred             cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHh
Q psy11239        278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQ  356 (410)
Q Consensus       278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q  356 (410)
                      |+..++   .++..|+.+||+|+.++ +++++....+.+..++.  +.+|+       +||++. ...|++|++.||++|
T Consensus        95 p~~~~~---~~~~~~~~~Ga~vi~~~-~~~~~~~~~a~~~~~~~--~~~~~-------~~~~np~~~~g~~t~~~Ei~~q  161 (310)
T d1ve5a1          95 PEDASP---YKKACARAYGAEVVDRG-VTAKNREEVARALQEET--GYALI-------HPFDDPLVIAGQGTAGLELLAQ  161 (310)
T ss_dssp             CCC--C---CHHHHHHHTTCEEECTT-CCTTTHHHHHHHHHHHH--CCEEC-------CSSSSHHHHHHHHHHHHHHHHH
T ss_pred             cccchH---HHHHHHhhhccccceee-ccchhHHHHHHHHHHhc--CCcCC-------CCCCChhhHhhhhhhHHHHHHH
Confidence            986655   67889999999999884 45777777887777775  45554       666433 678999999999999


Q ss_pred             hhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        357 LNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       357 ~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      +.+.+..||++|+|+|+||+++|++.++++.  .+++++|||.+++.+
T Consensus       162 ~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~  209 (310)
T d1ve5a1         162 AGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDA  209 (310)
T ss_dssp             HHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHH
T ss_pred             HHhcCCceeeeeeccCcchhhhhhhhhhhccCCccceEEEEeeccchh
Confidence            9866678999999999999999999999864  999999999987643

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=2e-33  Score=269.66  Aligned_cols=189  Identities=16%  Similarity=0.130  Sum_probs=152.2

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||++++++..   +.+||+|+|++|||||||+|++.+++..+.+.|.   +..|+++||||||.|+|++|+++|++|+
T Consensus        12 ~TPLv~~~~l~~---~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~   88 (310)
T d1y7la1          12 NTPLVRLKHFGH---NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKIT   88 (310)
T ss_dssp             CCCEEECSSSSS---TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEE
T ss_pred             CCCeEECCCCCC---CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCCceeeeecCCCchHHHHHHHHHhhcccc
Confidence            699999888764   5799999999999999999999999888887653   4566779999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCCh--hHHHhhhhhHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP--TIVRDFQSIIGY  351 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~t~g~  351 (410)
                      ||||...++   .++++++.+||+|+.++... .++...+..+...+. ...++.+      ++|.  ..+..|+.+++.
T Consensus        89 i~~p~~~~~---~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~a~  158 (310)
T d1y7la1          89 LTMPETMSL---ERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD-PSRYVML------KQFENPANPQIHRETTGP  158 (310)
T ss_dssp             EEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC-TTTEECC------CTTTCTHHHHHHHHTHHH
T ss_pred             ccchhhhhh---hhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh-cCccccC------CCCcchhhHHHhhhhHHH
Confidence            999986554   88999999999999996433 233333333333333 1234333      4442  336789999999


Q ss_pred             HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCcC
Q psy11239        352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISKK  402 (410)
Q Consensus       352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~~  402 (410)
                      ||.+|++   ..||+||+|+|+||+++|++.+++.   +++++++|||.+++..
T Consensus       159 Ei~~~~~---~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~ve~~~~~~~  209 (310)
T d1y7la1         159 EIWKDTD---GKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVI  209 (310)
T ss_dssp             HHHHHTT---TCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHH
T ss_pred             HHHHhcC---CCCCEEEecCcCCcchhHHHHHHHHhhcccceeccccccCchhh
Confidence            9999995   5799999999999999999999974   3899999999998654

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=6.3e-34  Score=273.24  Aligned_cols=173  Identities=17%  Similarity=0.122  Sum_probs=136.7

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc---CCceEEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~---~~~~v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      .+++|||+++++|+.   +.+||+|+|++|||||||||++...+..+.+.+   ++.+|+++||||||+|+|++|+++|+
T Consensus         9 ~ig~TPLv~~~~l~~---~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~   85 (310)
T d1y7la1           9 SIGNTPLVRLKHFGH---NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGY   85 (310)
T ss_dssp             GCCCCCEEECSSSSS---TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTC
T ss_pred             hcCCCCeEECCCCCC---CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCCceeeeecCCCchHHHHHHHHHhhc
Confidence            567999999988774   578999999999999999998876666666654   34678888999999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHH--HHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK--EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS  164 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~  164 (410)
                      +|+||||+.++   +.|+++|+.|||+|+.++ +.+.  +.+.+..+...+.. +      ...+.+||+++.  ..|++
T Consensus        86 ~~~i~~p~~~~---~~k~~~~~~~GA~vv~~~-~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~  154 (310)
T d1y7la1          86 KITLTMPETMS---LERKRLLCGLGVNLVLTE-GAKGMKGAIAKAEEIVASDP-S------RYVMLKQFENPANPQIHRE  154 (310)
T ss_dssp             CEEEEEETTSC---HHHHHHHHHTTCEEEEEC-GGGHHHHHHHHHHHHHHHCT-T------TEECCCTTTCTHHHHHHHH
T ss_pred             cccccchhhhh---hhhhhhHHHhCCceEecc-CccccchhhHHHHHHHHhhc-C------ccccCCCCcchhhHHHhhh
Confidence            99999999998   589999999999999998 4432  22222222222221 1      123457777663  57899


Q ss_pred             hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccc
Q psy11239        165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPI  201 (410)
Q Consensus       165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl  201 (410)
                      +++.||++|+.   ..||+||+|+|+||++.|+...|
T Consensus       155 ~~a~Ei~~~~~---~~~d~vv~~~G~Gg~~~G~~~~l  188 (310)
T d1y7la1         155 TTGPEIWKDTD---GKVDVVVAGVGTGGSITGISRAI  188 (310)
T ss_dssp             THHHHHHHHTT---TCEEEEEEECSSSHHHHHHHHHH
T ss_pred             hHHHHHHHhcC---CCCCEEEecCcCCcchhHHHHHH
Confidence            99999999864   35999999999999999996665

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.98  E-value=9.5e-33  Score=263.86  Aligned_cols=172  Identities=16%  Similarity=0.066  Sum_probs=133.2

Q ss_pred             CCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCCc
Q psy11239         13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLE   89 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~~   89 (410)
                      +++|||+++++|    .+.+||+|+|++|||||||+|++...+..+.+.+.   +.+++++|+||||+|+|++|+.+|++
T Consensus        11 ig~TPLi~L~~l----~~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~   86 (302)
T d1fcja_          11 IGHTPLVRLNRI----GNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALAYVAAARGYK   86 (302)
T ss_dssp             CCCCCEEECSSS----SSSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCC
T ss_pred             hCCCCcEECCcc----CCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEeccccchhHHHHHHHHhccC
Confidence            568999987654    36899999999999999999998777666665543   35677789999999999999999999


Q ss_pred             EEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHh--hcccCCcccccccccCcccccc--ccccchh
Q psy11239         90 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWS--NNILNSHYLIGTASGPHPYPTI--VRDFQSI  165 (410)
Q Consensus        90 ~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~--~~~g~~t  165 (410)
                      |+||||..++   +.|+.+|+.|||+|+.++ +.+.+....++....  +.. ...      .+.++++++  ...|++|
T Consensus        87 ~~i~~p~~~~---~~k~~~~~~~ga~v~~~~-~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~t  155 (302)
T d1fcja_          87 LTLTMPETMS---IERRKLLKALGANLVLTE-GAKGMKGAIQKAEEIVASDP-QKY------LLLQQFSNPANPEIHEKT  155 (302)
T ss_dssp             EEEEEETTSC---HHHHHHHHHTTCEEEEEC-GGGHHHHHHHHHHHHHHTST-TTE------EECCTTTCTHHHHHHHHT
T ss_pred             CceEEeecCc---HHHHHHHHHhccceEEec-cccccchhhhHHHHHHhhhc-cce------eccccccccchhHHHHhH
Confidence            9999999988   589999999999999998 554444444333322  211 111      223344433  3578999


Q ss_pred             HHHHHHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239        166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIY  202 (410)
Q Consensus       166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~  202 (410)
                      +++||++|++   ..||+||+|+|+||+++|+...|.
T Consensus       156 i~~Ei~e~~~---~~~d~vv~~vG~GG~~~Gi~~~lk  189 (302)
T d1fcja_         156 TGPEIWEDTD---GQVDVFISGVGTGGTLTGVTRYIK  189 (302)
T ss_dssp             HHHHHHHHTT---TCCCEEEEECSSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcC---CCCCEEEEcCCCccccccceeeee
Confidence            9999999964   358999999999999999966653

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=9.5e-31  Score=264.71  Aligned_cols=181  Identities=14%  Similarity=0.163  Sum_probs=146.4

Q ss_pred             CCCCcCccccccccc-cCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHh---c-CCceEEEeCccHHHHHHHHHHHHcC
Q psy11239         13 GRPTPIYYCKNISNI-LKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL---K-KKRIICETGAGMHGVSTATSCCLLN   87 (410)
Q Consensus        13 ~~~TPl~~~~~l~~~-~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~---~-~~~~v~~~ssGN~g~a~A~~a~~~G   87 (410)
                      .++|||+++++|+++ +|..+||+|+|++|||||||||++...+..+.+.   + ...+|+++|+||||+|+|++|+++|
T Consensus       119 eG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~aa~~G  198 (477)
T d1e5xa_         119 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG  198 (477)
T ss_dssp             CCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHT
T ss_pred             CCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCCcceEEeecCchHHHHHHHHHHhcC
Confidence            468999999999886 5667999999999999999999876555555443   2 2236666799999999999999999


Q ss_pred             CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHH
Q psy11239         88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG  167 (410)
Q Consensus        88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~  167 (410)
                      ++|+||||++...  +.|+.+++.+||+|+.++ ++++++.+.+.+.+++.   .+|...   ..|||   .+.|++|++
T Consensus       199 i~~~I~~P~~~~s--~~k~~~~~~~GA~V~~v~-g~~dda~~~~~e~a~~~---~~~~~~---~~N~~---~~~g~~t~~  266 (477)
T d1e5xa_         199 IPSIVFLPANKIS--MAQLVQPIANGAFVLSID-TDFDGCMKLIREITAEL---PIYLAN---SLNSL---RLEGQKTAA  266 (477)
T ss_dssp             CCEEEEEEGGGCC--HHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHHS---CEEEGG---GSHHH---HHHHHTHHH
T ss_pred             CCeEEEeCCCCcC--HHHHHHHHhcCccccccc-cCchhhHHHhhhhcccc---ceeccc---ccccc---cchhhhHHH
Confidence            9999999986443  478999999999999998 89999999998887653   233211   12333   468999999


Q ss_pred             HHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccc
Q psy11239        168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNI  207 (410)
Q Consensus       168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L  207 (410)
                      +||++|+.  +..||++++|+|+||++.|+...+..+..+
T Consensus       267 ~Ei~~ql~--~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~  304 (477)
T d1e5xa_         267 IEILQQFD--WQVPDWVIVPGGNLGNIYAFYKGFKMCQEL  304 (477)
T ss_dssp             HHHHHHTT--SCCCSEEEEECSSTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhc--cccceeeeecccCCcchhhHHHHHHHHhhc
Confidence            99999964  457999999999999999998888765443

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=7.3e-31  Score=250.65  Aligned_cols=188  Identities=18%  Similarity=0.127  Sum_probs=146.4

Q ss_pred             cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239        198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI  274 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~  274 (410)
                      .|||++++++.    +.+||+|+|++|||||||+|++.+++..+.+.|.   +..|+++|+||||.|+|++|+.+|++|+
T Consensus        13 ~TPLi~L~~l~----~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~   88 (302)
T d1fcja_          13 HTPLVRLNRIG----NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLT   88 (302)
T ss_dssp             CCCEEECSSSS----SSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEE
T ss_pred             CCCcEECCccC----CCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEeccccchhHHHHHHHHhccCCc
Confidence            59998766553    6899999999999999999999999998887665   3556779999999999999999999999


Q ss_pred             EEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHH--HHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKD--WSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      +|||...++   .++.+++.+||+|+.++ +...+....++..  ..+.. ...+...+..   + +.++..|++|+|.|
T Consensus        89 i~~p~~~~~---~k~~~~~~~ga~v~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~-~~~~~~~~~ti~~E  159 (302)
T d1fcja_          89 LTMPETMSI---ERRKLLKALGANLVLTE-GAKGMKGAIQKAEEIVASDP-QKYLLLQQFS---N-PANPEIHEKTTGPE  159 (302)
T ss_dssp             EEEETTSCH---HHHHHHHHTTCEEEEEC-GGGHHHHHHHHHHHHHHTST-TTEEECCTTT---C-THHHHHHHHTHHHH
T ss_pred             eEEeecCcH---HHHHHHHHhccceEEec-cccccchhhhHHHHHHhhhc-cceecccccc---c-cchhHHHHhHHHHH
Confidence            999986554   78899999999999985 3333333333332  22321 2334432211   1 22367899999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC----CCeEEEEccCCCCc
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS----NFKLVAIESGGISK  401 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~----~~~vigVe~~g~~~  401 (410)
                      |++|++   ..||+||+|+|+||+++|++.++++.    .+.++++++..+..
T Consensus       160 i~e~~~---~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~~~~~~s~~  209 (302)
T d1fcja_         160 IWEDTD---GQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPV  209 (302)
T ss_dssp             HHHHTT---TCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEEEEETTSCH
T ss_pred             HHHhcC---CCCCEEEEcCCCccccccceeeeeeccccccccccccccccchh
Confidence            999995   57999999999999999999999865    55677788887764

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.8e-31  Score=260.01  Aligned_cols=177  Identities=18%  Similarity=0.127  Sum_probs=144.9

Q ss_pred             CCCcCcccccc--ccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239         14 RPTPIYYCKNI--SNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI   91 (410)
Q Consensus        14 ~~TPl~~~~~l--~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~   91 (410)
                      ++|||++++++  +..+ +.+||+|+|++|||||||||.+...+..+++.+.+.+++ +||||||+++|++|+++|++|+
T Consensus        27 gnTPLv~l~~~~l~~~~-g~~i~~K~E~~nptGSfK~R~a~~~i~~a~~~g~~~iv~-~SsGN~g~a~a~~a~~~g~~~~  104 (351)
T d1v7ca_          27 GSTPLIPLKGPEEARKK-GIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVAC-ASTGNTAASAAAYAARAGILAI  104 (351)
T ss_dssp             CCCCEEECCCCHHHHTT-TEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCSEEEE-ECSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCeECCCcchhhcc-CCEEEEEEcCCCCccChHHHHHHHHHHHHHhcCCCeeee-eccccHHHHHHHHHhhhcccce
Confidence            47999998864  5555 789999999999999999999887777777777666666 5899999999999999999999


Q ss_pred             EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHHH
Q psy11239         92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIH  171 (410)
Q Consensus        92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI~  171 (410)
                      ||||+.++.  ..|..+|+.|||+|+.++ ++++++++.+.+++++..   ++      ..+++++..+.||+|+++||+
T Consensus       105 i~~p~~~~~--~~~~~~~~~~Ga~vi~~~-~~~~~~~~~a~~l~~~~~---~~------~~~~~~~~~~~g~~t~~~Ei~  172 (351)
T d1v7ca_         105 VVLPAGYVA--LGKVAQSLVHGARIVQVE-GNFDDALRLTQKLTEAFP---VA------LVNSVNPHRLEGQKTLAFEVV  172 (351)
T ss_dssp             EEEETTCSC--HHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHHSS---CE------ECSTTSHHHHHHHTHHHHHHH
T ss_pred             eecCCchHH--HHHHHhhhcCCCceEeec-cccchhhhhHHHHhhhhc---cc------cccccCchhhhhhhhHHHHHH
Confidence            999998764  367788999999999998 789999999999887642   22      223333335799999999999


Q ss_pred             HhhhhcCCCccEEEEecCCCCceeeccccccccccc
Q psy11239        172 QQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNI  207 (410)
Q Consensus       172 ~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L  207 (410)
                      +|+.   ..+|++++++|+||+..|....+.....+
T Consensus       173 eQl~---~~~d~~~~~~g~gg~~~g~~~~~~~~~~~  205 (351)
T d1v7ca_         173 DELG---DAPHYHALPVGNAGNITAHWMGYKAYHAL  205 (351)
T ss_dssp             HHHS---SCCSEEEEECSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHh---hhccceeeeecccCCcchhHHHHHHHhhc
Confidence            9975   35899999999999999987766544333

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.8e-30  Score=249.24  Aligned_cols=187  Identities=18%  Similarity=0.190  Sum_probs=158.7

Q ss_pred             cccccccccc--cccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239        198 PTPIYYCKNI--SNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII  275 (410)
Q Consensus       198 ~tpl~~~~~L--~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v  275 (410)
                      .|||++++++  +... +++||+|+|++||+||||+|++.+++..+++.+.+.+|+ +|+||||.++|++|+++|++|+|
T Consensus        28 nTPLv~l~~~~l~~~~-g~~i~~K~E~~nptGSfK~R~a~~~i~~a~~~g~~~iv~-~SsGN~g~a~a~~a~~~g~~~~i  105 (351)
T d1v7ca_          28 STPLIPLKGPEEARKK-GIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVAC-ASTGNTAASAAAYAARAGILAIV  105 (351)
T ss_dssp             CCCEEECCCCHHHHTT-TEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCSEEEE-ECSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCeECCCcchhhcc-CCEEEEEEcCCCCccChHHHHHHHHHHHHHhcCCCeeee-eccccHHHHHHHHHhhhccccee
Confidence            7999988764  4444 789999999999999999999999999999988887765 99999999999999999999999


Q ss_pred             EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239        276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ  355 (410)
Q Consensus       276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~  355 (410)
                      |||+..++  ..+..+|+.+||+|+.++ ++++++.+.+.++.++.  + +++.      ++++..+..|++|++.||++
T Consensus       106 ~~p~~~~~--~~~~~~~~~~Ga~vi~~~-~~~~~~~~~a~~l~~~~--~-~~~~------~~~~~~~~~g~~t~~~Ei~e  173 (351)
T d1v7ca_         106 VLPAGYVA--LGKVAQSLVHGARIVQVE-GNFDDALRLTQKLTEAF--P-VALV------NSVNPHRLEGQKTLAFEVVD  173 (351)
T ss_dssp             EEETTCSC--HHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHHS--S-CEEC------STTSHHHHHHHTHHHHHHHH
T ss_pred             ecCCchHH--HHHHHhhhcCCCceEeec-cccchhhhhHHHHhhhh--c-cccc------cccCchhhhhhhhHHHHHHH
Confidence            99976555  356678999999999985 55999999999988775  3 3442      44444578899999999999


Q ss_pred             hhhhcCCCCCEEEEccCchhHHHHHHHHHhc--------CCCeEEEEccCCCCc
Q psy11239        356 QLNFNFYNKKYILACVGGGSNALGIFYTFIN--------SNFKLVAIESGGISK  401 (410)
Q Consensus       356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--------~~~~vigVe~~g~~~  401 (410)
                      |++   ..+|++++++|+||+.+|++.+++.        ..+++++|++.++..
T Consensus       174 Ql~---~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (351)
T d1v7ca_         174 ELG---DAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAP  224 (351)
T ss_dssp             HHS---SCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCH
T ss_pred             HHh---hhccceeeeecccCCcchhHHHHHHHhhcccccCCcceeeeeccccch
Confidence            995   6799999999999999999887653        278999999998764

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.6e-29  Score=254.14  Aligned_cols=191  Identities=13%  Similarity=0.168  Sum_probs=158.6

Q ss_pred             ccccccccccccc-ccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcC----CCceEEecCchHHHHHHHHHHHHcCCc
Q psy11239        198 PTPIYYCKNISNI-LKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK----KKRIICETGAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       198 ~tpl~~~~~L~~~-~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g----~~~~v~~~ssGN~g~a~A~~a~~~G~~  272 (410)
                      .|||+++++|.+. .+..+||+|+|++|||||||||++..++..+.+.+    ....|+++|+||||.|+|++|+++|++
T Consensus       121 ~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~aa~~Gi~  200 (477)
T d1e5xa_         121 NSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIP  200 (477)
T ss_dssp             CCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHTCC
T ss_pred             CCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCCcceEEeecCchHHHHHHHHHHhcCCC
Confidence            6999999999876 44569999999999999999999988887665432    223566799999999999999999999


Q ss_pred             EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239        273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE  352 (410)
Q Consensus       273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E  352 (410)
                      |+||||++..+  ..++.+++.+||+|+.++ ++++++.+.+.+..++.   .+|..      +.++.....|++|++.|
T Consensus       201 ~~I~~P~~~~s--~~k~~~~~~~GA~V~~v~-g~~dda~~~~~e~a~~~---~~~~~------~~~N~~~~~g~~t~~~E  268 (477)
T d1e5xa_         201 SIVFLPANKIS--MAQLVQPIANGAFVLSID-TDFDGCMKLIREITAEL---PIYLA------NSLNSLRLEGQKTAAIE  268 (477)
T ss_dssp             EEEEEEGGGCC--HHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHHS---CEEEG------GGSHHHHHHHHTHHHHH
T ss_pred             eEEEeCCCCcC--HHHHHHHHhcCccccccc-cCchhhHHHhhhhcccc---ceecc------cccccccchhhhHHHHH
Confidence            99999975444  367889999999999995 77999999998887664   45652      22222356799999999


Q ss_pred             HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239        353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK  402 (410)
Q Consensus       353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~  402 (410)
                      |++|+.  +..||++++|+|+||+++|++.+++..        .+++++|++++++..
T Consensus       269 i~~ql~--~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~  324 (477)
T d1e5xa_         269 ILQQFD--WQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPL  324 (477)
T ss_dssp             HHHHTT--SCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTH
T ss_pred             HHHhhc--cccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEEeccchhhH
Confidence            999997  578999999999999999999998742        679999999998753

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=7.3e-26  Score=216.89  Aligned_cols=199  Identities=21%  Similarity=0.184  Sum_probs=145.0

Q ss_pred             eeccccccccccccccccCceeEEeecCCC--CCchhhHHHHHHHHHHHHHcCCCceE-EecCchHHHHHHHHHHHHcCC
Q psy11239        195 LGRPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHKMNNSIAQSLLAKFLKKKRII-CETGAGMHGVSTATSCCLLNL  271 (410)
Q Consensus       195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~--ptgS~K~R~a~~~~~~a~~~g~~~~v-~~~ssGN~g~a~A~~a~~~G~  271 (410)
                      ....|||+++++|++.+ +++||+|+|++|  |+||||+|++.+++..+.+.+.+.++ +++|+||||.|+|++|+.+|+
T Consensus        18 ~~~~TPL~~~~~L~~~~-G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~~~~~~~~s~gN~g~a~A~~a~~~g~   96 (325)
T d1j0aa_          18 IPWETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGL   96 (325)
T ss_dssp             CCSCCCEEECHHHHHHH-TSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCCceeEHHHhHHHH-CCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCCeeEEEeeCcchHHHHHHHHHhhhcC
Confidence            34589999999999888 689999999988  89999999999999988888887654 557889999999999999999


Q ss_pred             cEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHH
Q psy11239        272 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG  350 (410)
Q Consensus       272 ~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g  350 (410)
                      +|++|+|...+..+...+..+..+|++++...... .....+...+...... ...+++.+..    +......++.+++
T Consensus        97 ~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~  171 (325)
T d1j0aa_          97 DAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREG-RKPYVIPPGG----ASPIGTLGYVRAV  171 (325)
T ss_dssp             EEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSS-CCEEEECGGG----CSHHHHTHHHHHH
T ss_pred             ceEEEeecccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhc-cCceeeecCC----Cccccccccchhh
Confidence            99999998655432222333333344454443232 2223333333333332 2333332211    1222566788888


Q ss_pred             HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239        351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK  402 (410)
Q Consensus       351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~  402 (410)
                      .|+.+|.   +..||+||+|+|+|++++|+..+++..  ++++++|++.+....
T Consensus       172 ~e~~~~~---~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~~~~~  222 (325)
T d1j0aa_         172 GEIATQS---EVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEV  222 (325)
T ss_dssp             HHHHHHC---CCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSS
T ss_pred             ccccccc---ccccceeecccccchhhhhHHHHHHhhCccccccccccccchhh
Confidence            9999988   468999999999999999999999864  999999999987653

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=6.1e-26  Score=217.45  Aligned_cols=178  Identities=17%  Similarity=0.073  Sum_probs=123.9

Q ss_pred             CCCCCcCccccccccccCCceEEEeeCCCC--CCCchhhhHHHHHHHHHHHhcCCce-EEEeCccHHHHHHHHHHHHcCC
Q psy11239         12 KGRPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHKMNNSIAQSLLAKFLKKKRI-ICETGAGMHGVSTATSCCLLNL   88 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~n--ptGS~K~R~~~~~~~~~~~~~~~~~-v~~~ssGN~g~a~A~~a~~~G~   88 (410)
                      ..++|||+++++|++++ +.+||+|+|++|  ||||||||++...+..+.+.+...+ ++++|+||||.|+|++|+.+|+
T Consensus        18 ~~~~TPL~~~~~L~~~~-G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~~~~~~~~s~gN~g~a~A~~a~~~g~   96 (325)
T d1j0aa_          18 IPWETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGL   96 (325)
T ss_dssp             CCSCCCEEECHHHHHHH-TSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCCceeEHHHhHHHH-CCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCCeeEEEeeCcchHHHHHHHHHhhhcC
Confidence            67799999999999998 579999999888  9999999987766666667766664 4455679999999999999999


Q ss_pred             cEEEEeccCCccccchhHHHHHhcCC-EEEEEeCC--CHHH-HHHHHHHHHhhcccCCcccccccccCcccccc-ccccc
Q psy11239         89 ESIIYIGENDYKRQNINVKKIKLLGG-TVYLVQYG--NLKE-AMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQ  163 (410)
Q Consensus        89 ~~~iv~p~~~~~~~~~k~~~~~~~GA-~v~~v~~g--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~  163 (410)
                      +|++|+|...+.   .|...+..+++ .+..++..  .... ..+...+.......+.++      ..++++++ ...++
T Consensus        97 ~~~i~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  167 (325)
T d1j0aa_          97 DAILVLRGKEEL---KGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYV------IPPGGASPIGTLGY  167 (325)
T ss_dssp             EEEEEEESCCCS---CHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEE------ECGGGCSHHHHTHH
T ss_pred             ceEEEeeccccc---chhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCcee------eecCCCcccccccc
Confidence            999999998774   34444443333 33333322  2222 222222222222111111      12333333 35678


Q ss_pred             hhHHHHHHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239        164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIY  202 (410)
Q Consensus       164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~  202 (410)
                      .+++.|+.+|..   ..||+||+|+|+|+++.|+...+.
T Consensus       168 ~~~~~e~~~~~~---~~~d~vv~~~G~G~~~~gi~~~~~  203 (325)
T d1j0aa_         168 VRAVGEIATQSE---VKFDSIVVAAGSGGTLAGLSLGLS  203 (325)
T ss_dssp             HHHHHHHHHHCC---CCCSEEEEEESSSHHHHHHHHHHH
T ss_pred             chhhcccccccc---cccceeecccccchhhhhHHHHHH
Confidence            888899988743   469999999999999999976664

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

Probab=99.92  E-value=1.6e-25  Score=213.78  Aligned_cols=187  Identities=18%  Similarity=0.138  Sum_probs=131.6

Q ss_pred             CCCCCCcCccccccccccCC-ceEEEeeCCCCCCCch---hhhHHHHHHHHHHHhcCCceE-EEeCccHHHHHHHHHHHH
Q psy11239         11 KKGRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAH---KMNNSIAQSLLAKFLKKKRII-CETGAGMHGVSTATSCCL   85 (410)
Q Consensus        11 ~~~~~TPl~~~~~l~~~~~~-~~i~~K~E~~nptGS~---K~R~~~~~~~~~~~~~~~~~v-~~~ssGN~g~a~A~~a~~   85 (410)
                      ...++|||+++++|++.+|. .+||+|+|++||||||   |||++...+..+++.+.+.++ +++|+||||+|+|++|+.
T Consensus        11 l~~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g~~~v~~~~~s~gN~g~A~A~~a~~   90 (338)
T d1tyza_          11 LTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAH   90 (338)
T ss_dssp             CSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHH
T ss_pred             cCCCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCCCCeEEEEccCCchHHHHHHHHHhh
Confidence            46689999999999999874 5999999999999999   999877766677777777644 466889999999999999


Q ss_pred             cCCcEEEEeccCCccc-----cchhHHHHHhcCCEEEEEeCCCH---HHHHHHHHHHHhhcccCCcccccccccCccccc
Q psy11239         86 LNLESIIYIGENDYKR-----QNINVKKIKLLGGTVYLVQYGNL---KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT  157 (410)
Q Consensus        86 ~G~~~~iv~p~~~~~~-----~~~k~~~~~~~GA~v~~v~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  157 (410)
                      +|++|+||||...+..     ...+...++.+|+.++.++.+..   ......+........ +..|+.......+    
T Consensus        91 ~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----  165 (338)
T d1tyza_          91 LGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAG-GKPYAIPAGCSDH----  165 (338)
T ss_dssp             HTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTT-CCEEEECGGGTSS----
T ss_pred             ccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcc-cceeeecccCccC----
Confidence            9999999999865532     12456789999999999874421   112222222222221 2222221111112    


Q ss_pred             cccccchhHHHHHHHh--hhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        158 IVRDFQSIIGYEIHQQ--LNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       158 ~~~~g~~ti~~EI~~q--~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                       ...++.+.+.|+..|  ....+..||+||+|+|+|+++.|+..++..
T Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~  212 (338)
T d1tyza_         166 -PLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAA  212 (338)
T ss_dssp             -TTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHT
T ss_pred             -ccccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHH
Confidence             235566666654433  223345799999999999999999888754

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

Probab=99.92  E-value=2.2e-25  Score=213.50  Aligned_cols=188  Identities=15%  Similarity=0.073  Sum_probs=138.2

Q ss_pred             CCCCCcCccccccccccCC-ceEEEeeCCCCCCCch---hhhHHHHHHHHHHHhcCCceE-EEeCccHHHHHHHHHHHHc
Q psy11239         12 KGRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAH---KMNNSIAQSLLAKFLKKKRII-CETGAGMHGVSTATSCCLL   86 (410)
Q Consensus        12 ~~~~TPl~~~~~l~~~~~~-~~i~~K~E~~nptGS~---K~R~~~~~~~~~~~~~~~~~v-~~~ssGN~g~a~A~~a~~~   86 (410)
                      ..+||||+++++|++.+|. .+||+|+|++||+|||   |+|++...+..+.+.+...++ +.+|+||||+|+|++|+.+
T Consensus        12 ~~~~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g~~~i~~~~as~gN~g~a~A~~a~~~   91 (341)
T d1f2da_          12 TFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKL   91 (341)
T ss_dssp             SSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred             CCCCCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCCCCEEEEEccCcchHHHHHHHHHHHh
Confidence            4679999999999999974 5999999999999999   999876555566667766644 5567899999999999999


Q ss_pred             CCcEEEEeccCCcccc--------chhHHHHHhcCCEEEEEeCCC---HHHHHHHHHHHHhhcccCCcccccccccCccc
Q psy11239         87 NLESIIYIGENDYKRQ--------NINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY  155 (410)
Q Consensus        87 G~~~~iv~p~~~~~~~--------~~k~~~~~~~GA~v~~v~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  155 (410)
                      |++|+||||..++..+        ..++..++.+|+++..++...   .........+.......+.++...+ ...+|+
T Consensus        92 g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  170 (341)
T d1f2da_          92 GKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAG-CSEHKY  170 (341)
T ss_dssp             TCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGG-GTTSTT
T ss_pred             cCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccccCCc-cccccc
Confidence            9999999999877422        245788899999999987431   1223333333333332222222221 122343


Q ss_pred             cccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239        156 PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY  203 (410)
Q Consensus       156 ~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~  203 (410)
                         ...++.+.+.|+.+|.......||++|+|+|+|+++.|+..++..
T Consensus       171 ---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~  215 (341)
T d1f2da_         171 ---GGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQ  215 (341)
T ss_dssp             ---TTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGG
T ss_pred             ---chhhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHH
Confidence               246677778888877665667899999999999999999877764

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

Probab=99.92  E-value=1.8e-24  Score=206.36  Aligned_cols=200  Identities=18%  Similarity=0.207  Sum_probs=147.3

Q ss_pred             eccccccccccccccccC-ceeEEeecCCCCCchh---hHHHHHHHHHHHHHcCCCceE-EecCchHHHHHHHHHHHHcC
Q psy11239        196 GRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAH---KMNNSIAQSLLAKFLKKKRII-CETGAGMHGVSTATSCCLLN  270 (410)
Q Consensus       196 G~~tpl~~~~~L~~~~~~-~~v~~K~e~~~ptgS~---K~R~a~~~~~~a~~~g~~~~v-~~~ssGN~g~a~A~~a~~~G  270 (410)
                      ..+|||+++++|++.++. ++||+|+|++||+|||   |+|++.+.+..+++.+.+.++ +++|+||||.|+|++|+.+|
T Consensus        13 ~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g~~~v~~~~~s~gN~g~A~A~~a~~~g   92 (338)
T d1tyza_          13 FGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLG   92 (338)
T ss_dssp             SSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHT
T ss_pred             CCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCCCCeEEEEccCCchHHHHHHHHHhhcc
Confidence            348999999999988754 6999999999999999   999999999999999988765 35789999999999999999


Q ss_pred             CcEEEEEcCCCccc-----hhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHH
Q psy11239        271 LESIIYIGENDYKR-----QNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV  342 (410)
Q Consensus       271 ~~~~vv~p~~~~~~-----~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (410)
                      ++|++|||+..+..     +..+...++.+|++++.++.+.   .......+........ ...|+......++++    
T Consensus        93 ~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----  167 (338)
T d1tyza_          93 MKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAG-GKPYAIPAGCSDHPL----  167 (338)
T ss_dssp             CEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTT-CCEEEECGGGTSSTT----
T ss_pred             CcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcc-cceeeecccCccCcc----
Confidence            99999999754321     2345668889999999887553   2222333333333332 345554332222333    


Q ss_pred             HhhhhhHHHHHHHhhh--hcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCc
Q psy11239        343 RDFQSIIGYEIHQQLN--FNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISK  401 (410)
Q Consensus       343 ~~g~~t~g~Ei~~q~~--~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~  401 (410)
                       .+..+.+.|...|..  ..+..||++|+|+|+|++++|++.+++..  .++++++++..+..
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
T d1tyza_         168 -GGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPA  229 (338)
T ss_dssp             -TTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGGGEEEEECSSCHH
T ss_pred             -ccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHhhhhcccceeeccchh
Confidence             344455555544432  33578999999999999999999999875  78999999887643

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

Probab=99.92  E-value=1.5e-24  Score=207.62  Aligned_cols=199  Identities=17%  Similarity=0.138  Sum_probs=154.7

Q ss_pred             cccccccccccccccC-ceeEEeecCCCCCchh---hHHHHHHHHHHHHHcCCCceE-EecCchHHHHHHHHHHHHcCCc
Q psy11239        198 PTPIYYCKNISNILKG-SKIFLKREDLNFTGAH---KMNNSIAQSLLAKFLKKKRII-CETGAGMHGVSTATSCCLLNLE  272 (410)
Q Consensus       198 ~tpl~~~~~L~~~~~~-~~v~~K~e~~~ptgS~---K~R~a~~~~~~a~~~g~~~~v-~~~ssGN~g~a~A~~a~~~G~~  272 (410)
                      +|||+++++|++.++. .+||+|+|++||+|||   |+|++.+++..+.+.+.+.++ +++|+||||.++|++|+.+|++
T Consensus        15 ~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g~~~i~~~~as~gN~g~a~A~~a~~~g~~   94 (341)
T d1f2da_          15 PSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKK   94 (341)
T ss_dssp             SCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCHHHHHHHHHHHHHTCE
T ss_pred             CCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCCCCEEEEEccCcchHHHHHHHHHHHhcCc
Confidence            9999999999998853 5999999999999999   999999999889988887664 5688899999999999999999


Q ss_pred             EEEEEcCCCccch--------hhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH
Q psy11239        273 SIIYIGENDYKRQ--------NINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI  341 (410)
Q Consensus       273 ~~vv~p~~~~~~~--------~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (410)
                      |++|||+..+..+        ..++..++.+|+++..++...   .........+...... ...|........+++.  
T Consensus        95 ~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--  171 (341)
T d1f2da_          95 CVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAG-HKPYPIPAGCSEHKYG--  171 (341)
T ss_dssp             EEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTT-CCEEEECGGGTTSTTT--
T ss_pred             eEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhc-cCccccCCcccccccc--
Confidence            9999998655421        245678889999999986432   2233444444444442 3444443322224543  


Q ss_pred             HHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239        342 VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS  400 (410)
Q Consensus       342 ~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~  400 (410)
                       ..++.+.+.|+.+|+......||++|+|+|+|++++|++.+++..  .++++++++..+.
T Consensus       172 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~  231 (341)
T d1f2da_         172 -GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTS  231 (341)
T ss_dssp             -TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCH
T ss_pred             -hhhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHhcccccccccccccch
Confidence             456667778888887755679999999999999999999999875  8899999888664

>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=6.1e-16  Score=151.66  Aligned_cols=181  Identities=14%  Similarity=0.056  Sum_probs=124.8

Q ss_pred             hhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc--CCceEEEeCccHHHHHHH
Q psy11239          3 WFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK--KKRIICETGAGMHGVSTA   80 (410)
Q Consensus         3 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~--~~~~v~~~ssGN~g~a~A   80 (410)
                      .+++|.......+.|+.++        ..++|+.-.++.||+|||||++.+...+.....  .+.+|+.+||||+|.|.+
T Consensus        71 ~l~~~~~~~~~~~~p~~~~--------~~~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~~~~~~~Il~ATSGDTG~Aa~  142 (428)
T d1vb3a1          71 ILEERVRAAFAFPAPVANV--------ESDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVA  142 (428)
T ss_dssp             HHHHHHHHHCCSCCCEEEE--------ETTEEEEECCCSTTSBTHHHHHHHHHHHHHHHTTTCCEEEEEECSSSHHHHHH
T ss_pred             HHHHHHHHHhcCCccceec--------cCCceeeeeccCCCcccccchhhHHHHHHhhhcccccceeeecCCCCcchhHH
Confidence            3444444444445676543        346899888999999999998754333322222  223455569999999988


Q ss_pred             HHHHHc-CCcEEEEeccC-CccccchhHHHHHhcCCEE--EEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccc
Q psy11239         81 TSCCLL-NLESIIYIGEN-DYKRQNINVKKIKLLGGTV--YLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP  156 (410)
Q Consensus        81 ~~a~~~-G~~~~iv~p~~-~~~~~~~k~~~~~~~GA~v--~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  156 (410)
                      .+.+.. +++++|+.|+. .+   +.++++|..+|+.|  +.|+ |++|++.+.+.+.+.+......+.+.+   .|..+
T Consensus       143 ~a~~~~~~i~~~vl~P~g~vS---~~Q~~Qmtt~g~nv~vi~V~-G~fDDcq~lvk~~f~d~~~~~~~~l~s---~NSIN  215 (428)
T d1vb3a1         143 HAFYGLPNVKVVILYPRGKIS---PLQEKLFCTLGGNIETVAID-GDFDACQALVKQAFDDEELKVALGLNS---ANSIN  215 (428)
T ss_dssp             HHTTTCTTEEEEEEEETTCSC---HHHHHHHHSCCTTEEEEEEE-SCHHHHHHHHHHGGGCHHHHHHHTEEC---CSTTS
T ss_pred             HHHhCccccceEEEecCCCCc---HHHHHHHhhccCCceEEecC-CChhHHHHHHHHHhhhhhhhhcCCeee---ecccC
Confidence            777766 58888888975 44   46788999999975  5677 899999999888765431111111122   23333


Q ss_pred             ccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeecc
Q psy11239        157 TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRP  198 (410)
Q Consensus       157 ~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~  198 (410)
                      +.-+.+|.+..+|++.|+......|+.|++|+|+.|.+.+.+
T Consensus       216 ~~Rl~~Q~vyyf~a~~ql~~~~~~~~~~~VPtGNfGni~Ag~  257 (428)
T d1vb3a1         216 ISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGL  257 (428)
T ss_dssp             HHHHHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHH
T ss_pred             hhHHhhhHHHHHHHHHHhccccCCceEEeccHHHHHHHHHHH
Confidence            324689999999999997655556899999999999988753

>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.9e-13  Score=130.77  Aligned_cols=167  Identities=15%  Similarity=0.034  Sum_probs=116.0

Q ss_pred             ceeEEeecCCCCCchhhHHHHHHHHHHHHH--cCCCceEEecCchHHHHHHHHHHHHc-CCcEEEEEcCCCccchhhhHH
Q psy11239        214 SKIFLKREDLNFTGAHKMNNSIAQSLLAKF--LKKKRIICETGAGMHGVSTATSCCLL-NLESIIYIGENDYKRQNINVK  290 (410)
Q Consensus       214 ~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~--~g~~~~v~~~ssGN~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~  290 (410)
                      .++|+......||+|||||++..+......  ...+..|+++||||+|.|++.+++.. +++++|+.|++..+  ..+..
T Consensus        91 ~~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~~~~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~~vl~P~g~vS--~~Q~~  168 (428)
T d1vb3a1          91 SDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKIS--PLQEK  168 (428)
T ss_dssp             TTEEEEECCCSTTSBTHHHHHHHHHHHHHHHTTTCCEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSC--HHHHH
T ss_pred             CCceeeeeccCCCcccccchhhHHHHHHhhhcccccceeeecCCCCcchhHHHHHhCccccceEEEecCCCCc--HHHHH
Confidence            457777777889999999988554333332  22233455699999999998887766 58899999987555  24456


Q ss_pred             HHHHCCCEE--EEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEE
Q psy11239        291 KIKLLGGTV--YLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL  368 (410)
Q Consensus       291 ~~~~~Ga~v--~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv  368 (410)
                      +|..+|+.|  +.| +|++||+...+.+...+..-...+-+.+.   |..+-....+|.+...|+..|+......++.++
T Consensus       169 Qmtt~g~nv~vi~V-~G~fDDcq~lvk~~f~d~~~~~~~~l~s~---NSIN~~Rl~~Q~vyyf~a~~ql~~~~~~~~~~~  244 (428)
T d1vb3a1         169 LFCTLGGNIETVAI-DGDFDACQALVKQAFDDEELKVALGLNSA---NSINISRLLAQICYYFEAVAQLPQETRNQLVVS  244 (428)
T ss_dssp             HHHSCCTTEEEEEE-ESCHHHHHHHHHHGGGCHHHHHHHTEECC---STTSHHHHHHTTHHHHHHHTTSCTTTTTSEEEE
T ss_pred             HHhhccCCceEEec-CCChhHHHHHHHHHhhhhhhhhcCCeeee---cccChhHHhhhHHHHHHHHHHhccccCCceEEe
Confidence            778899875  445 47799999888887644310000001111   233333678999999999999964345688999


Q ss_pred             EccCchhHHHHHHHHHhc
Q psy11239        369 ACVGGGSNALGIFYTFIN  386 (410)
Q Consensus       369 ~~vGtGg~~~Gi~~~~~~  386 (410)
                      +|+|+.|.+.+.+.+.+.
T Consensus       245 VPtGNfGni~Ag~~Ak~m  262 (428)
T d1vb3a1         245 VPSGNFGDLTAGLLAKSL  262 (428)
T ss_dssp             EECSSCHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHhhhc
Confidence            999999998877666654

>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=0.00018  Score=70.37  Aligned_cols=170  Identities=14%  Similarity=0.011  Sum_probs=103.0

Q ss_pred             CcCccccccccccCCceEEEeeCCCCCCCchhhhHHH-----HHHHHHHH-------hcCCceEEEeCccHHHHHHHHHH
Q psy11239         16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI-----AQSLLAKF-------LKKKRIICETGAGMHGVSTATSC   83 (410)
Q Consensus        16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~-----~~~~~~~~-------~~~~~~v~~~ssGN~g~a~A~~a   83 (410)
                      +||.++.   ... ..++|+=-=++-||.+|||-++.     +...+.+.       ++++.+|+.+|||-+|.|.+.+.
T Consensus        96 ~pl~~~~---~~~-~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af  171 (511)
T d1kl7a_          96 TPLVQNV---TGD-KENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGL  171 (511)
T ss_dssp             SCEECCT---TCS-SSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHH
T ss_pred             Ccccccc---cCC-CCceEEEeeccCCcccccCcchhhHHHHHHHHHHhcccccccccCceEEEEEecCCCccHHHHHHh
Confidence            6776642   121 45688866688999999999653     22233332       12334666679999999988877


Q ss_pred             H-HcCCcEEEEeccC-CccccchhHHHHHhcCC-EE--EEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc
Q psy11239         84 C-LLNLESIIYIGEN-DYKRQNINVKKIKLLGG-TV--YLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI  158 (410)
Q Consensus        84 ~-~~G~~~~iv~p~~-~~~~~~~k~~~~~~~GA-~v--~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  158 (410)
                      + ..+++++|+-|.+ .++   .-.++|...++ .|  +-|+ |++|++...+.+...+..-...+.+.+   .|-.++.
T Consensus       172 ~~~~~i~v~vlyP~~~vS~---iQ~~Qmtt~~~~Nv~~i~v~-G~fDDcq~~vk~~f~d~~~~~~~~l~s---~NSiNw~  244 (511)
T d1kl7a_         172 RGKKDVSVFILYPTGRISP---IQEEQMTTVPDENVQTLSVT-GTFDNCQDIVKAIFGDKEFNSKHNVGA---VNSINWA  244 (511)
T ss_dssp             TTCTTEEEEEEEETTSSCH---HHHHHHHHCCCTTEEEEEES-SCHHHHHHHHHHHHHCSSCC--CCBCC---CCSCCHH
T ss_pred             cCCCCceeEEeccCCCCch---HHHHHHhhcCCceEEEEEec-cChHHHHHHHHHHHhhhhhhccccccc---ccceeeh
Confidence            6 7889999999985 443   34667777655 44  5567 899999999998886542222222222   2323222


Q ss_pred             ccccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceee
Q psy11239        159 VRDFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALG  196 (410)
Q Consensus       159 ~~~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G  196 (410)
                      -+..|..--.-...|+.. ....+=.|++|.|+=|.+.+
T Consensus       245 Rll~QivyYf~ay~q~~~~~~~~~v~f~VPTGNfGni~A  283 (511)
T d1kl7a_         245 RILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILA  283 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHH
T ss_pred             hhhhhHHHHHHHHHHHhhhccCCeeEEEeccCcHHHHHH
Confidence            122232222233344321 11235579999999887763

>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=0.00098  Score=65.08  Aligned_cols=176  Identities=13%  Similarity=0.018  Sum_probs=101.2

Q ss_pred             ceeEEeecCCCCCchhhHHHHHHHHH---H--HHH-------cCCCceEEecCchHHHHHHHHHHH-HcCCcEEEEEcCC
Q psy11239        214 SKIFLKREDLNFTGAHKMNNSIAQSL---L--AKF-------LKKKRIICETGAGMHGVSTATSCC-LLNLESIIYIGEN  280 (410)
Q Consensus       214 ~~v~~K~e~~~ptgS~K~R~a~~~~~---~--a~~-------~g~~~~v~~~ssGN~g~a~A~~a~-~~G~~~~vv~p~~  280 (410)
                      .++|+-.-..-||.+|||-++-.+..   .  .++       .+.+-+|++++||-+|.|.+.+++ +-+++++|+.|++
T Consensus       107 ~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af~~~~~i~v~vlyP~~  186 (511)
T d1kl7a_         107 ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTG  186 (511)
T ss_dssp             SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHHTTCTTEEEEEEEETT
T ss_pred             CceEEEeeccCCcccccCcchhhHHHHHHHHHHhcccccccccCceEEEEEecCCCccHHHHHHhcCCCCceeEEeccCC
Confidence            45666555678999999987633321   1  111       123445666999999999888876 6789999999987


Q ss_pred             CccchhhhHHHHHHCCC-EE--EEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239        281 DYKRQNINVKKIKLLGG-TV--YLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL  357 (410)
Q Consensus       281 ~~~~~~~~~~~~~~~Ga-~v--~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~  357 (410)
                      ..+.  .-..+|...++ .|  +-| .|++||+.....+...+..-...+-+.+ .  |.-+..+...|-..-.-...|+
T Consensus       187 ~vS~--iQ~~Qmtt~~~~Nv~~i~v-~G~fDDcq~~vk~~f~d~~~~~~~~l~s-~--NSiNw~Rll~QivyYf~ay~q~  260 (511)
T d1kl7a_         187 RISP--IQEEQMTTVPDENVQTLSV-TGTFDNCQDIVKAIFGDKEFNSKHNVGA-V--NSINWARILAQMTYYFYSFFQA  260 (511)
T ss_dssp             SSCH--HHHHHHHHCCCTTEEEEEE-SSCHHHHHHHHHHHHHCSSCC--CCBCC-C--CSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCch--HHHHHHhhcCCceEEEEEe-ccChHHHHHHHHHHHhhhhhhccccccc-c--cceeehhhhhhHHHHHHHHHHH
Confidence            5553  22346666544 44  455 4779999998888876652111112221 1  2222112233322223333454


Q ss_pred             hh-cCCCCCEEEEccCchhH-HHHHHHHHhcCCC-eEEEEc
Q psy11239        358 NF-NFYNKKYILACVGGGSN-ALGIFYTFINSNF-KLVAIE  395 (410)
Q Consensus       358 ~~-~~~~~d~iv~~vGtGg~-~~Gi~~~~~~~~~-~vigVe  395 (410)
                      .. ....+=.++||.|.=|. ++|.++.-.-..+ |+|...
T Consensus       261 ~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAt  301 (511)
T d1kl7a_         261 TNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIAT  301 (511)
T ss_dssp             HSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             hhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEec
Confidence            31 11234468999999666 4666554444433 555543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.82  E-value=0.7  Score=36.90  Aligned_cols=49  Identities=18%  Similarity=0.168  Sum_probs=37.2

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  302 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v  302 (410)
                      +.+++ .++|.-|...+..|+.+|.+.+++-+   .   +.+++.++.+|++...+
T Consensus        28 ~~vlV-~G~G~vG~~~~~~ak~~Ga~vi~v~~---~---~~r~~~a~~~ga~~~~~   76 (170)
T d1e3ja2          28 TTVLV-IGAGPIGLVSVLAAKAYGAFVVCTAR---S---PRRLEVAKNCGADVTLV   76 (170)
T ss_dssp             CEEEE-ECCSHHHHHHHHHHHHTTCEEEEEES---C---HHHHHHHHHTTCSEEEE
T ss_pred             CEEEE-EcccccchhhHhhHhhhcccccccch---H---HHHHHHHHHcCCcEEEe
Confidence            45555 67899999999999999987655542   2   25678889999986654

>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein AF0103
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.68  E-value=0.56  Score=38.20  Aligned_cols=77  Identities=10%  Similarity=0.035  Sum_probs=55.8

Q ss_pred             CCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCcc------chhhhHHHHHHCCCE
Q psy11239        225 FTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYK------RQNINVKKIKLLGGT  298 (410)
Q Consensus       225 ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~------~~~~~~~~~~~~Ga~  298 (410)
                      |...|-.+.+...+..|++.+.+.+|+-+++|.++..++-+.  .|++.++|....-..      -.+.+++.++..|.+
T Consensus        12 ~G~~NT~~~l~~a~~rA~Elgi~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~   89 (190)
T d1vp8a_          12 PGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAK   89 (190)
T ss_dssp             CSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCE
T ss_pred             CCcccHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHHHcCCE
Confidence            334455555656677889999999988899999998877755  389988877442111      134678899999999


Q ss_pred             EEEEe
Q psy11239        299 VYLVQ  303 (410)
Q Consensus       299 v~~v~  303 (410)
                      |+...
T Consensus        90 V~t~t   94 (190)
T d1vp8a_          90 IVRQS   94 (190)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            98743

>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein AF0103
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.45  E-value=0.48  Score=38.60  Aligned_cols=77  Identities=10%  Similarity=0.025  Sum_probs=53.9

Q ss_pred             CCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEecc------CCccccchhHHHHHhcCCE
Q psy11239         42 FTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGE------NDYKRQNINVKKIKLLGGT  115 (410)
Q Consensus        42 ptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~------~~~~~~~~k~~~~~~~GA~  115 (410)
                      |+-.+-++...+.+..+++++-+.+|+++++|.++..++=+.  .|++.++|...      +..+-.++.++.++..|.+
T Consensus        12 ~G~~NT~~~l~~a~~rA~Elgi~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~   89 (190)
T d1vp8a_          12 PGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAK   89 (190)
T ss_dssp             CSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCE
T ss_pred             CCcccHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHHHcCCE
Confidence            333344444445666788888889999888899998766655  48998877643      1112235889999999999


Q ss_pred             EEEEe
Q psy11239        116 VYLVQ  120 (410)
Q Consensus       116 v~~v~  120 (410)
                      |+...
T Consensus        90 V~t~t   94 (190)
T d1vp8a_          90 IVRQS   94 (190)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            97643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=89.50  E-value=0.72  Score=36.82  Aligned_cols=54  Identities=17%  Similarity=0.114  Sum_probs=39.8

Q ss_pred             hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      .++++.|+..++|.-|...+..++.+|.+.+++-+.      +.|++..+.+||+...+.
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~------~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS------PRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC------HHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchH------HHHHHHHHHcCCcEEEec
Confidence            344554444578999999999999999875554322      368999999999876654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.46  E-value=0.94  Score=35.95  Aligned_cols=54  Identities=13%  Similarity=0.150  Sum_probs=39.6

Q ss_pred             hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      .+++..|+..++|.-|...+..++.+|.+.+++-.  .    +.|++..+.+||+.+...
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~--~----~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDI--D----DAKLELARKLGASLTVNA   78 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES--C----HHHHHHHHHTTCSEEEET
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecc--h----hhHHHhhhccCccccccc
Confidence            44555443357899999999999999987555532  1    368899999999876543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.26  E-value=0.92  Score=36.04  Aligned_cols=61  Identities=10%  Similarity=0.028  Sum_probs=41.6

Q ss_pred             HHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239        235 IAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  302 (410)
Q Consensus       235 ~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v  302 (410)
                      +..+..+.-+..+.+++ .++|.-|...+..|+.+|.+++++-+   .   +.+++.++.+||+.+..
T Consensus        17 ~~al~~~~~~~g~~VlV-~GaG~vG~~~~~~ak~~G~~Vi~~~~---~---~~~~~~a~~~Ga~~~i~   77 (166)
T d1llua2          17 YKGLKQTNARPGQWVAI-SGIGGLGHVAVQYARAMGLHVAAIDI---D---DAKLELARKLGASLTVN   77 (166)
T ss_dssp             HHHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEEES---C---HHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHhCCCCCCEEEE-eeccccHHHHHHHHHHcCCccceecc---h---hhHHHhhhccCcccccc
Confidence            33344443222345666 77899999999999999977555532   2   25678889999986654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=1.4  Score=35.13  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=44.9

Q ss_pred             hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHH
Q psy11239         61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAM  128 (410)
Q Consensus        61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~  128 (410)
                      .+++..|+..++|.-|...+..++.+|.+-++++..+     +.|++..+.+||+.+..... +..+..
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~-----~~rl~~a~~~Ga~~~~~~~~~~~~~~~   87 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS-----ATRLSKAKEIGADLVLQISKESPQEIA   87 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTTCSEEEECSSCCHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC-----HHHHHHHHHhCCccccccccccccccc
Confidence            3445544445889999999999999999766666433     36899999999987766533 344443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.45  E-value=0.14  Score=36.12  Aligned_cols=34  Identities=12%  Similarity=-0.005  Sum_probs=29.3

Q ss_pred             eEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCcc
Q psy11239        249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYK  283 (410)
Q Consensus       249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~  283 (410)
                      +-+ -++|..|+.++.+|+.+|++++++-|+.+.+
T Consensus         4 vgI-lG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           4 VCV-LGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEE-EBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             EEE-EcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            434 7999999999999999999999999875544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.87  E-value=1.5  Score=34.90  Aligned_cols=61  Identities=16%  Similarity=0.217  Sum_probs=43.6

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHH
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNE  313 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~  313 (410)
                      +.+++ .++|.-|...+..++.+|.+-++++.  ..   +.+++..+.+||+.+...... ..+....
T Consensus        28 d~VlI-~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~---~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~   89 (171)
T d1pl8a2          28 HKVLV-CGAGPIGMVTLLVAKAMGAAQVVVTD--LS---ATRLSKAKEIGADLVLQISKESPQEIARK   89 (171)
T ss_dssp             CEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEE--SC---HHHHHHHHHTTCSEEEECSSCCHHHHHHH
T ss_pred             CEEEE-ECCCccHHHHHHHHHHcCCceEEecc--CC---HHHHHHHHHhCCccccccccccccccccc
Confidence            45555 78899999999999999997666662  12   367888999999876654433 5444443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.69  E-value=0.71  Score=36.96  Aligned_cols=54  Identities=11%  Similarity=0.081  Sum_probs=39.4

Q ss_pred             HhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239         60 FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  119 (410)
Q Consensus        60 ~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v  119 (410)
                      ..+++..|+..++|..|...+..++.+|.+.+++-. +     +.|++..+.+||+.+..
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~-~-----~~k~~~a~~lGa~~~i~   77 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISR-S-----SRKREDAMKMGADHYIA   77 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEES-S-----STTHHHHHHHTCSEEEE
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhcccccccccc-c-----hhHHHHhhccCCcEEee
Confidence            344555443357899999999999999998665432 2     36899999999976544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=87.66  E-value=1  Score=36.43  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             CCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHH
Q psy11239         63 KKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKD  134 (410)
Q Consensus        63 ~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~  134 (410)
                      ++..|...++|..|......++.+|.+-++++..+     +.|++..+.+||+.++.... +..+..++..+.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~-----~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~   95 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS-----PNRLKLAEEIGADLTLNRRETSVEERRKAIMDI   95 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC-----HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccc-----cccccccccccceEEEeccccchHHHHHHHHHh
Confidence            34444334789999999999999998644444222     36889999999976654422 345554444443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.50  E-value=0.92  Score=36.51  Aligned_cols=53  Identities=21%  Similarity=0.210  Sum_probs=40.2

Q ss_pred             hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239         61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL  118 (410)
Q Consensus        61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~  118 (410)
                      .+++..|+..++|--|...+..|+.+|.+.+++...+     +.|++..+.+|++-+.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~-----~~k~~~a~~~Ga~~~i   78 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV-----ESRLELAKQLGATHVI   78 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC-----HHHHHHHHHHTCSEEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccH-----HHHHHHHHHcCCeEEE
Confidence            3445544435789999999999999999987777443     3689999999996543

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=87.11  E-value=0.46  Score=33.26  Aligned_cols=43  Identities=19%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCC
Q psy11239         66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGG  114 (410)
Q Consensus        66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA  114 (410)
                      +++...+|..|......|+.+|++++.+.-.      ++|.+.++.+||
T Consensus        35 vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s------~~k~~~~~~lGA   77 (77)
T d1o8ca2          35 IVVTGASGGVGSTAVALLHKLGYQVVAVSGR------ESTHEYLKSLGA   77 (77)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCCEEEEESC------GGGHHHHHHHTE
T ss_pred             EEEEeCCCcHHHHHHHHHHHcCCeEEEEECC------HHHHHHHHHCCC
Confidence            6665566999999999999999987766632      368999999997

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=86.77  E-value=0.76  Score=34.11  Aligned_cols=58  Identities=17%  Similarity=0.137  Sum_probs=35.4

Q ss_pred             CCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc-CCCeEEEE-ccC
Q psy11239        336 HPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN-SNFKLVAI-ESG  397 (410)
Q Consensus       336 ~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~-~~~~vigV-e~~  397 (410)
                      .||..-..+--.....++.+.+.  ...+|.||++|.|.++.+  ...+++ .++.|+|| +|.
T Consensus        37 ~PYG~ks~~~I~~~~~~~~~~l~--~~~~~~iViACNTaS~~a--l~~lr~~~~~PiiGvi~P~   96 (105)
T d1b74a1          37 VPYGIRSKDTIIRYSLECAGFLK--DKGVDIIVVACNTASAYA--LERLKKEINVPVFGVIEPG   96 (105)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHH--TTTCSEEEECCHHHHHHH--HHHHHHHSSSCEEESHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH--HcCCCEEEEecCcHHHHH--HHHHHHHCCCCEEEeehHH
Confidence            67733211112224467776665  357999999999877654  233443 37889994 673

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.64  E-value=0.68  Score=37.62  Aligned_cols=53  Identities=15%  Similarity=0.158  Sum_probs=41.4

Q ss_pred             cCCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         62 KKKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        62 ~~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      ++++ +++...+|.-|.+....|+..|.+++.+...      ++|.+.++.+|++.++..
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~------~~~~~~~~~~Ga~~vi~~   81 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS------DEKIAYLKQIGFDAAFNY   81 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS------HHHHHHHHHTTCSEEEET
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCC------HHHHHHHHhhhhhhhccc
Confidence            4444 5554556999999999999999998877632      368999999999977654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.54  E-value=1.1  Score=35.36  Aligned_cols=54  Identities=15%  Similarity=0.075  Sum_probs=40.5

Q ss_pred             hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      .+++.+|+..++|.-|...+..++..|.+++++..   +   +.|++..+.+||+.+...
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~---~---~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDI---G---DEKLELAKELGADLVVNP   78 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECS---C---HHHHHHHHHTTCSEEECT
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCC---C---HHHhhhhhhcCcceeccc
Confidence            44555444457799999999999999998655432   1   368999999999987664

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.29  E-value=1.5  Score=36.03  Aligned_cols=56  Identities=21%  Similarity=0.170  Sum_probs=42.2

Q ss_pred             HhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         60 FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        60 ~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      ..+++++|+..++|-.|...+..++.+|...++++..+     +.|++..+.+||+.+...
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~-----~~rl~~a~~~Ga~~~~~~   77 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN-----PARLAHAKAQGFEIADLS   77 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTTCEEEETT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc-----chhhHhhhhccccEEEeC
Confidence            34555555445789999999999999999766666433     368999999999986543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.21  E-value=1.2  Score=35.29  Aligned_cols=52  Identities=13%  Similarity=0.077  Sum_probs=38.7

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCC
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG  305 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g  305 (410)
                      +.+++ .++|.-|...+..++..|.+++++..   .   +.+++.++.+|++.+..+..
T Consensus        29 ~~vlv-~G~G~iG~~a~~~a~~~g~~v~~~~~---~---~~r~~~~k~~Ga~~~~~~~~   80 (168)
T d1rjwa2          29 EWVAI-YGIGGLGHVAVQYAKAMGLNVVAVDI---G---DEKLELAKELGADLVVNPLK   80 (168)
T ss_dssp             CEEEE-ECCSTTHHHHHHHHHHTTCEEEEECS---C---HHHHHHHHHTTCSEEECTTT
T ss_pred             CEEEE-eecccchhhhhHHHhcCCCeEeccCC---C---HHHhhhhhhcCcceeccccc
Confidence            45666 67788999999999999998555431   2   25678999999998775433

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.21  E-value=1.5  Score=36.00  Aligned_cols=51  Identities=22%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  303 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~  303 (410)
                      +++++ .++|--|...+..++.+|...++++.  ..   +.+++..+.+|++.+..+
T Consensus        27 ~tVlV-~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~---~~rl~~a~~~Ga~~~~~~   77 (195)
T d1kola2          27 STVYV-AGAGPVGLAAAASARLLGAAVVIVGD--LN---PARLAHAKAQGFEIADLS   77 (195)
T ss_dssp             CEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEE--SC---HHHHHHHHHTTCEEEETT
T ss_pred             CEEEE-ECcCHHHHHHHHHHHhhcccceeeec--cc---chhhHhhhhccccEEEeC
Confidence            45555 78898898888889999997777762  22   267889999999987653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=85.86  E-value=1.3  Score=35.70  Aligned_cols=51  Identities=14%  Similarity=0.137  Sum_probs=40.4

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  303 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~  303 (410)
                      +.+++...+|.-|.++...|+.+|.+++.++.   .+   .+++.++.+|++.++..
T Consensus        31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~---~~~~~~~~~Ga~~vi~~   81 (182)
T d1v3va2          31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SD---EKIAYLKQIGFDAAFNY   81 (182)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SH---HHHHHHHHTTCSEEEET
T ss_pred             CEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CH---HHHHHHHhhhhhhhccc
Confidence            46666577789999999999999999888773   22   46789999999976653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.43  E-value=1.4  Score=35.34  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=38.3

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  302 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v  302 (410)
                      +.+++...+|..|.++...|+.+|.+++++..   .+   .+++.++.+||+.++-
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~---~k~~~~~~lGa~~vi~   79 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TA---QKAQSALKAGAWQVIN   79 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SH---HHHHHHHHHTCSEEEE
T ss_pred             CEEEEEccccccchHHHHHHHHhCCeEeeccc---ch---HHHHHHHhcCCeEEEE
Confidence            46666567778999999999999998777763   22   5677889999986553

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=1.2  Score=35.44  Aligned_cols=55  Identities=11%  Similarity=0.085  Sum_probs=40.3

Q ss_pred             HhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         60 FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        60 ~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      ..+++..|+..++|.-|...+..|+.+|.+.+++...      +.|++..+.+||+.+...
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~------~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS------EAKREAAKALGADEVVNS   81 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS------GGGHHHHHHHTCSEEEET
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccc------hhHHHHHhccCCcEEEEC
Confidence            3445554433578999999999999999988764432      257889999999876543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.52  E-value=2.1  Score=34.08  Aligned_cols=55  Identities=15%  Similarity=0.139  Sum_probs=41.5

Q ss_pred             hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      .+++.+|+-.++|.-|...+..++.+|...++++..+     +.|++..+.+|++.+...
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~-----~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK-----EEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS-----HHHHHHHHHTTCSEEEET
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccch-----hHHHHHHhhcccceeecC
Confidence            3455544445789999999999999998877666443     368999999999866554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=84.44  E-value=1.8  Score=34.89  Aligned_cols=65  Identities=20%  Similarity=0.242  Sum_probs=42.9

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHHHHHHHHHHH
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKD  317 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~~~~~~a~~~  317 (410)
                      +.+++ .++|..|......|+.+|.+-++++.  ..   +.+++.++.+||+.+..... +..+..++..+.
T Consensus        30 ~~VlV-~GaG~iG~~~~~~ak~~Ga~~Vi~~~--~~---~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~   95 (182)
T d1vj0a2          30 KTVVI-QGAGPLGLFGVVIARSLGAENVIVIA--GS---PNRLKLAEEIGADLTLNRRETSVEERRKAIMDI   95 (182)
T ss_dssp             CEEEE-ECCSHHHHHHHHHHHHTTBSEEEEEE--SC---HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH
T ss_pred             CEEEE-ECCCccchhheecccccccccccccc--cc---cccccccccccceEEEeccccchHHHHHHHHHh
Confidence            45555 67789999999999999986444441  12   25678889999976554332 255555544443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=1.8  Score=34.58  Aligned_cols=51  Identities=14%  Similarity=0.147  Sum_probs=37.7

Q ss_pred             cCCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239         62 KKKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL  118 (410)
Q Consensus        62 ~~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~  118 (410)
                      +++. +++...+|..|.+....|+.+|++.++.+..      ++|++..+.+||+-+.
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~------~~~~~~~~~~Ga~~vi   78 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT------EEGQKIVLQNGAHEVF   78 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS------HHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEEeccccccccccccccccCccccccccc------ccccccccccCccccc
Confidence            3444 5554335999999999999999987766632      2688899999997554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.89  E-value=1.2  Score=35.64  Aligned_cols=49  Identities=12%  Similarity=0.178  Sum_probs=36.2

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL  301 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~  301 (410)
                      +.+++...+|.-|.+....|+.+|.+++++..  + +   .+++.++.+||+.+.
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~--~-~---~~~~~~~~lGa~~~i   77 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAAS--R-P---EKLALPLALGAEEAA   77 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEES--S-G---GGSHHHHHTTCSEEE
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccc--c-c---cccccccccccceee
Confidence            45666344689999999999999998776663  2 2   356688889998665

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.41  E-value=1.4  Score=35.33  Aligned_cols=52  Identities=15%  Similarity=0.115  Sum_probs=38.9

Q ss_pred             cCCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239         62 KKKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  119 (410)
Q Consensus        62 ~~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v  119 (410)
                      ++++ +++...+|..|..+...|+..|.+++++...      +.|.+.++.+||+.++-
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s------~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGT------AQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESS------HHHHHHHHHHTCSEEEE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccc------hHHHHHHHhcCCeEEEE
Confidence            4444 4454456889999999999999987766533      36889999999986653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=1.4  Score=30.66  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCC
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGG  297 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga  297 (410)
                      +.+++...+|.-|......|+.+|.+++.+..   .+   .|.+.++.+||
T Consensus        33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~---s~---~k~~~~~~lGA   77 (77)
T d1o8ca2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RE---STHEYLKSLGA   77 (77)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CG---GGHHHHHHHTE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC---CH---HHHHHHHHCCC
Confidence            45666577788888888889999999887773   22   46778888886

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.21  E-value=1.3  Score=35.30  Aligned_cols=49  Identities=14%  Similarity=0.175  Sum_probs=36.7

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  302 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v  302 (410)
                      +.+++ .++|..|...+..|+.+|.+++++-.  + +   .+++.++.+||+.+..
T Consensus        29 ~~vlI-~GaG~vG~~a~q~ak~~G~~vi~~~~--~-~---~k~~~a~~lGa~~~i~   77 (168)
T d1piwa2          29 KKVGI-VGLGGIGSMGTLISKAMGAETYVISR--S-S---RKREDAMKMGADHYIA   77 (168)
T ss_dssp             CEEEE-ECCSHHHHHHHHHHHHHTCEEEEEES--S-S---TTHHHHHHHTCSEEEE
T ss_pred             CEEEE-ECCCCcchhHHHHhhhcccccccccc--c-h---hHHHHhhccCCcEEee
Confidence            45555 67899999999999999998766543  2 2   4677889999975543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=83.04  E-value=1.5  Score=35.21  Aligned_cols=50  Identities=26%  Similarity=0.327  Sum_probs=37.4

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  302 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v  302 (410)
                      +.+++ .++|--|...+..|+.+|.+-++++..  .   +.+++.++.+||+.++.
T Consensus        29 ~~VlI-~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~---~~r~~~a~~lGa~~~i~   78 (174)
T d1jqba2          29 SSVVV-IGIGAVGLMGIAGAKLRGAGRIIGVGS--R---PICVEAAKFYGATDILN   78 (174)
T ss_dssp             CCEEE-ECCSHHHHHHHHHHHTTTCSCEEEECC--C---HHHHHHHHHHTCSEEEC
T ss_pred             CEEEE-EcCCcchhhhhhhhhcccccccccccc--h---hhhHHHHHhhCcccccc
Confidence            45555 678989999999999999876666631  2   25678899999976543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.75  E-value=1.5  Score=35.20  Aligned_cols=54  Identities=24%  Similarity=0.282  Sum_probs=39.7

Q ss_pred             hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239         61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  119 (410)
Q Consensus        61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v  119 (410)
                      .+++..|+..++|-.|...+..|+.+|.+-++++..+     +.|++..+.+||+.++.
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~-----~~r~~~a~~lGa~~~i~   78 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR-----PICVEAAKFYGATDILN   78 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC-----HHHHHHHHHHTCSEEEC
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccch-----hhhHHHHHhhCcccccc
Confidence            3444433335789999999999999999666666443     36899999999976543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.50  E-value=1  Score=36.60  Aligned_cols=49  Identities=18%  Similarity=0.234  Sum_probs=39.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239         65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  119 (410)
Q Consensus        65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v  119 (410)
                      .+++...+|..|.+.-..|+.+|.+++.+...      ++|.+.++.+||+.++-
T Consensus        34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~------~~k~~~~~~lGad~vi~   82 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGR------ESTHEYLKSLGASRVLP   82 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCCEEEEESC------GGGHHHHHHHTEEEEEE
T ss_pred             cEEEEEccccchHHHHHHHHHcCCCeEEEecc------hhHHHHHHhhccccccc
Confidence            46665566999999999999999998877632      36889999999997754

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=82.45  E-value=1.3  Score=35.62  Aligned_cols=49  Identities=12%  Similarity=0.154  Sum_probs=40.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239         65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  119 (410)
Q Consensus        65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v  119 (410)
                      .+++...+|.-|.+..-.|+.+|.+++.....      .+|.+.++.+||+.+..
T Consensus        26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s------~~k~~~~~~lGad~vi~   74 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGN------REAADYLKQLGASEVIS   74 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESS------SSTHHHHHHHTCSEEEE
T ss_pred             EEEEeCCcchHHHHHHHHHHHcCCceEEEecC------HHHHHHHHhhcccceEe
Confidence            47776567999999999999999998877643      26899999999998753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=82.00  E-value=0.99  Score=36.87  Aligned_cols=57  Identities=23%  Similarity=0.246  Sum_probs=42.4

Q ss_pred             cCCc-eEEE-eCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239         62 KKKR-IICE-TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ  120 (410)
Q Consensus        62 ~~~~-~v~~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~  120 (410)
                      +++. +++- +.+|..|.+....|+.+|.++++++......  .++...++.+||+.++..
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~--~~~~~~~~~lGad~vi~~   85 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNL--DEVVASLKELGATQVITE   85 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTH--HHHHHHHHHHTCSEEEEH
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccccc--chHHhhhhhccccEEEec
Confidence            3443 5553 3568899999999999999999888543321  367889999999987654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.32  E-value=3.6  Score=32.35  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=39.8

Q ss_pred             hcCCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239         61 LKKKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  119 (410)
Q Consensus        61 ~~~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v  119 (410)
                      .+++. +++...+|..|...+..++..|...+++...+     +.|++..+.+||+.+..
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~-----~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR-----EEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS-----HHHHHHHHHHTCSEEEE
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccc-----hhhHHHHHHcCCceeec
Confidence            34444 55543369999999999999998777666544     36899999999986544

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=1.9  Score=34.22  Aligned_cols=49  Identities=14%  Similarity=0.174  Sum_probs=37.4

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  302 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v  302 (410)
                      +.+++ .++|.-|...+..|+.+|.+.+++..  . +   .+++.++.+||+.+..
T Consensus        32 ~~VlI-~GaG~vG~~a~qlak~~Ga~~i~~~~--~-~---~~~~~a~~lGad~~i~   80 (168)
T d1uufa2          32 KKVGV-VGIGGLGHMGIKLAHAMGAHVVAFTT--S-E---AKREAAKALGADEVVN   80 (168)
T ss_dssp             CEEEE-ECCSHHHHHHHHHHHHTTCEEEEEES--S-G---GGHHHHHHHTCSEEEE
T ss_pred             CEEEE-eccchHHHHHHHHhhcccccchhhcc--c-h---hHHHHHhccCCcEEEE
Confidence            45666 67888999999999999998876553  2 2   4567888999987664

>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein MTH1675
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.06  E-value=1.8  Score=34.97  Aligned_cols=74  Identities=8%  Similarity=-0.020  Sum_probs=48.0

Q ss_pred             CCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEecc------CCccccchhHHHHHhcCCEE
Q psy11239         43 TGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGE------NDYKRQNINVKKIKLLGGTV  116 (410)
Q Consensus        43 tGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~------~~~~~~~~k~~~~~~~GA~v  116 (410)
                      +-.+-++...+.+..+++++-+.+|+++|+|.++..++=+.   .-+.++|...      +..+..++.++.++..|.+|
T Consensus        12 G~~NT~~~l~~a~~ra~elgi~~iVvAStsG~TA~~~~e~~---~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V   88 (186)
T d1t57a_          12 GKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMV---EGNIVSVTHHAGFREKGQLELEDEARDALLERGVNV   88 (186)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTC---CSEEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEE
T ss_pred             CcccHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHhc---CCCEEEEecccCCCCCCCCccCHHHHHHHHHcCCEE
Confidence            33334444445666788888889999988899997654333   3355444322      11222357889999999999


Q ss_pred             EEE
Q psy11239        117 YLV  119 (410)
Q Consensus       117 ~~v  119 (410)
                      +.-
T Consensus        89 ~t~   91 (186)
T d1t57a_          89 YAG   91 (186)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.60  E-value=1  Score=33.66  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=29.3

Q ss_pred             ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCcc
Q psy11239        248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYK  283 (410)
Q Consensus       248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~  283 (410)
                      ++-+ -++|..|+.+|.+|+++|++++++-|..+.+
T Consensus        13 kigI-lGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2          13 RVML-LGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             EEEE-ESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             EEEE-EeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            3444 7899999999999999999999998865544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.07  E-value=2  Score=34.67  Aligned_cols=50  Identities=18%  Similarity=0.210  Sum_probs=39.4

Q ss_pred             CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239        247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV  302 (410)
Q Consensus       247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v  302 (410)
                      +.+++...+|.-|.+..-.|+.+|.+++.+..   .+   .+.+.++.+||+.+.-
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~---~~---~k~~~~~~lGad~vi~   82 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RE---STHEYLKSLGASRVLP   82 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CG---GGHHHHHHHTEEEEEE
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEec---ch---hHHHHHHhhccccccc
Confidence            46666677888898888899999999998773   22   4567888999997764