Psyllid ID: psy11240

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MNTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSDPVKSWKMKQNKENAL
cccccEEccccccccccHHHHHHHHcccccEEEcEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccEEEEcccccEEEcccccccccccHHHHHHHcccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHcccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHcccccccHHHHHHHHHHHccc
cccHHHHHHcccccccHHHHHHHHHHHHHHHHHcEccccccHHHHHHHHcHHcHHHHHHHHHHcccccEEHHcccccHHHcccccccEEEcHHHHHHHHHHHcccccccccccccccccccccEEEEHEHHHccHHHEEHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccEEccccccccEEEEEccccccEEEEEcccccccccccccccccccccccEEEEEEEccccccHHHHHccccEEEEEEEEEEcccEEEEcccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHcccccccHHHHHHHHHHHccc
MNTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFkysgdnddAHIRMAFSKKLVDERKTWLTTWMEECRRRkemgigedylytkttKAITYTEFVNKELILfsnmdnersipslcdglkpgsrkVLFTCLKRNDRREVKVAQLAGSVAehsayhhgeqSLMSTIINLAQnfvgsnninllqpigqfgTFLFIFESTNLSGAVVNaldfgsggwrfesndykeyhtdTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMcafdrygvltkfdtTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKcdgdlrieNRKKKEMIAELIKRkydsdpvkswkmkqnkenal
mntihdvmiaglgtstskEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEecrrrkemgigedylytkTTKAITYTEFVNKELILFSNMDNERSIPslcdglkpgsrKVLFtclkrndrreVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGaealkltnqarfivekcdgdlrienrkKKEMIAELikrkydsdpvkswkmkqnkenal
MNTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSDPVKSWKMKQNKENAL
************************************************FSKKLVDERKTWLTTWMEECRRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIEN******IAELI**********************
*NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWME**************LYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDS****************
MNTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSDPVK************
*NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSDPVKSWKMKQN*****
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MNTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSDPVKSWKMKQNKENAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
P41516 1526 DNA topoisomerase 2-alpha yes N/A 0.495 0.117 0.777 1e-79
O16140 1547 DNA topoisomerase 2 OS=Bo N/A N/A 0.495 0.116 0.761 3e-79
P41515 1526 DNA topoisomerase 2-alpha yes N/A 0.495 0.117 0.772 5e-79
P11388 1531 DNA topoisomerase 2-alpha yes N/A 0.495 0.117 0.766 5e-79
Q01320 1528 DNA topoisomerase 2-alpha yes N/A 0.495 0.117 0.766 6e-79
O46374 1533 DNA topoisomerase 2-alpha yes N/A 0.495 0.117 0.766 9e-79
O42131 1627 DNA topoisomerase 2-beta yes N/A 0.495 0.110 0.75 5e-78
Q64511 1612 DNA topoisomerase 2-beta no N/A 0.495 0.111 0.75 1e-77
Q64399 1612 DNA topoisomerase 2-beta N/A N/A 0.495 0.111 0.75 1e-77
Q02880 1626 DNA topoisomerase 2-beta no N/A 0.495 0.110 0.75 1e-77
>sp|P41516|TOP2A_RAT DNA topoisomerase 2-alpha OS=Rattus norvegicus GN=Top2a PE=2 SV=1 Back     alignment and function desciption
 Score =  296 bits (759), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/180 (77%), Positives = 157/180 (87%)

Query: 11  GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
           GLGTSTSKEAKEYF+NM+RHRI FKYSG  DDA I +AFSKK VD+RK WLT +ME+ R+
Sbjct: 613 GLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSKKQVDDRKEWLTNFMEDRRQ 672

Query: 71  RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
           RK +G+ EDYLY +TT  +TY +F+NKELILFSN DNERSIPS+ DGLKPG RKVLFTC 
Sbjct: 673 RKLLGLPEDYLYGQTTMYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCF 732

Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
           KRND+REVKVAQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 733 KRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 792
Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks.
Rattus norvegicus (taxid: 10116)
EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3
>sp|O16140|TOP2_BOMMO DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV=1 Back     alignment and function description
>sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1 Back     alignment and function description
>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 Back     alignment and function description
>sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2 Back     alignment and function description
>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1 Back     alignment and function description
>sp|O42131|TOP2B_CHICK DNA topoisomerase 2-beta OS=Gallus gallus GN=TOP2B PE=2 SV=1 Back     alignment and function description
>sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta OS=Mus musculus GN=Top2b PE=1 SV=2 Back     alignment and function description
>sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta OS=Cricetulus longicaudatus GN=TOP2B PE=2 SV=1 Back     alignment and function description
>sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
328724888 1537 PREDICTED: DNA topoisomerase 2-like isof 0.495 0.117 0.794 4e-82
242016991 1223 DNA topoisomerase 2-beta, putative [Pedi 0.495 0.147 0.755 2e-79
1174742 1526 RecName: Full=DNA topoisomerase 2-alpha; 0.495 0.117 0.777 8e-78
38259192 1526 DNA topoisomerase 2-alpha [Rattus norveg 0.495 0.117 0.777 8e-78
149054149 1528 topoisomerase (DNA) 2 alpha [Rattus norv 0.495 0.117 0.777 9e-78
334322751 1668 PREDICTED: DNA topoisomerase 2-alpha [Mo 0.495 0.107 0.777 9e-78
405962935 1665 DNA topoisomerase 2-beta [Crassostrea gi 0.495 0.108 0.761 1e-77
395532490 1561 PREDICTED: DNA topoisomerase 2-alpha iso 0.495 0.115 0.777 1e-77
395532492 1550 PREDICTED: DNA topoisomerase 2-alpha iso 0.495 0.116 0.777 1e-77
26328987 1028 unnamed protein product [Mus musculus] 0.495 0.175 0.766 1e-77
>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum] gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 158/180 (87%)

Query: 11  GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
           GLGTSTSKEAKEYF NM+RHRILFKY    DD HI MAFSKK+VD RK WLT WM E +R
Sbjct: 605 GLGTSTSKEAKEYFQNMKRHRILFKYEDAGDDEHIEMAFSKKMVDSRKEWLTNWMVESKR 664

Query: 71  RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
           RKE G+ E+YLY K T+ +TY +FVNKEL+LFSNMDNERSI S+ DGLKPGSRKVLFTC+
Sbjct: 665 RKEAGLAEEYLYEKNTRTVTYKDFVNKELVLFSNMDNERSIASVVDGLKPGSRKVLFTCI 724

Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
           KRND+RE+KVAQLAGSVAEHSAYHHGE SLMSTI+NLAQN+VGSNNINLLQPIGQFGT L
Sbjct: 725 KRNDKREIKVAQLAGSVAEHSAYHHGEVSLMSTIVNLAQNYVGSNNINLLQPIGQFGTRL 784

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis] gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|1174742|sp|P41516.1|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA topoisomerase II, alpha isozyme gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus] Back     alignment and taxonomy information
>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus] gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus] Back     alignment and taxonomy information
>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus] Back     alignment and taxonomy information
>gi|334322751|ref|XP_001369978.2| PREDICTED: DNA topoisomerase 2-alpha [Monodelphis domestica] Back     alignment and taxonomy information
>gi|405962935|gb|EKC28563.1| DNA topoisomerase 2-beta [Crassostrea gigas] Back     alignment and taxonomy information
>gi|395532490|ref|XP_003768303.1| PREDICTED: DNA topoisomerase 2-alpha isoform 1 [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|395532492|ref|XP_003768304.1| PREDICTED: DNA topoisomerase 2-alpha isoform 2 [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
RGD|62048 1526 Top2a "topoisomerase (DNA) II 0.495 0.117 0.777 8.4e-115
UNIPROTKB|E9PTY5 1526 Top2a "DNA topoisomerase 2" [R 0.495 0.117 0.777 8.4e-115
UNIPROTKB|F1M7A0 1528 Top2a "DNA topoisomerase 2" [R 0.495 0.117 0.777 8.4e-115
UNIPROTKB|J9PAY8 1541 TOP2A "DNA topoisomerase 2" [C 0.495 0.116 0.772 1.1e-114
UNIPROTKB|P41515 1526 TOP2A "DNA topoisomerase 2-alp 0.495 0.117 0.772 1.8e-114
UNIPROTKB|E9PCY5 1150 TOP2B "DNA topoisomerase 2" [H 0.495 0.156 0.75 1.9e-114
UNIPROTKB|F1NZF0 1553 TOP2A "DNA topoisomerase 2" [G 0.495 0.115 0.772 2e-114
UNIPROTKB|P11388 1531 TOP2A "DNA topoisomerase 2-alp 0.495 0.117 0.766 2.3e-114
UNIPROTKB|O46374 1533 TOP2A "DNA topoisomerase 2-alp 0.495 0.117 0.766 3.8e-114
UNIPROTKB|F1P2F2 1586 TOP2A "DNA topoisomerase 2" [G 0.495 0.113 0.772 7.7e-114
RGD|62048 Top2a "topoisomerase (DNA) II alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 728 (261.3 bits), Expect = 8.4e-115, Sum P(2) = 8.4e-115
 Identities = 140/180 (77%), Positives = 157/180 (87%)

Query:    11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
             GLGTSTSKEAKEYF+NM+RHRI FKYSG  DDA I +AFSKK VD+RK WLT +ME+ R+
Sbjct:   613 GLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSKKQVDDRKEWLTNFMEDRRQ 672

Query:    71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
             RK +G+ EDYLY +TT  +TY +F+NKELILFSN DNERSIPS+ DGLKPG RKVLFTC 
Sbjct:   673 RKLLGLPEDYLYGQTTMYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCF 732

Query:   131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
             KRND+REVKVAQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct:   733 KRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 792
GO:0000287 "magnesium ion binding" evidence=ISO;ISS
GO:0000712 "resolution of meiotic recombination intermediates" evidence=IBA
GO:0000793 "condensed chromosome" evidence=ISO
GO:0000795 "synaptonemal complex" evidence=IBA
GO:0000819 "sister chromatid segregation" evidence=IBA
GO:0003677 "DNA binding" evidence=ISO;TAS
GO:0003682 "chromatin binding" evidence=ISO;IDA
GO:0003916 "DNA topoisomerase activity" evidence=IDA
GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISO;IDA
GO:0005080 "protein kinase C binding" evidence=ISO
GO:0005524 "ATP binding" evidence=IDA;TAS
GO:0005634 "nucleus" evidence=ISO;IDA
GO:0005654 "nucleoplasm" evidence=ISO
GO:0005730 "nucleolus" evidence=ISO;IDA
GO:0006200 "ATP catabolic process" evidence=ISO
GO:0006261 "DNA-dependent DNA replication" evidence=IBA
GO:0006265 "DNA topological change" evidence=ISO;IDA
GO:0006266 "DNA ligation" evidence=ISO
GO:0006312 "mitotic recombination" evidence=IBA
GO:0006974 "response to DNA damage stimulus" evidence=ISO
GO:0007059 "chromosome segregation" evidence=ISO;IBA
GO:0007420 "brain development" evidence=IEP
GO:0007568 "aging" evidence=IEP
GO:0008022 "protein C-terminus binding" evidence=ISO
GO:0008094 "DNA-dependent ATPase activity" evidence=ISO
GO:0008144 "drug binding" evidence=ISO
GO:0008301 "DNA binding, bending" evidence=ISO;ISS
GO:0009295 "nucleoid" evidence=IBA
GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA
GO:0019899 "enzyme binding" evidence=ISO
GO:0021702 "cerebellar Purkinje cell differentiation" evidence=IEP
GO:0021707 "cerebellar granule cell differentiation" evidence=IEP
GO:0030261 "chromosome condensation" evidence=ISO
GO:0030263 "apoptotic chromosome condensation" evidence=ISO
GO:0040016 "embryonic cleavage" evidence=ISO
GO:0042493 "response to drug" evidence=IEP
GO:0042803 "protein homodimerization activity" evidence=ISO
GO:0042826 "histone deacetylase binding" evidence=ISO
GO:0043065 "positive regulation of apoptotic process" evidence=ISO
GO:0043130 "ubiquitin binding" evidence=ISO
GO:0043234 "protein complex" evidence=ISO
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0043566 "structure-specific DNA binding" evidence=IDA
GO:0045070 "positive regulation of viral genome replication" evidence=ISO
GO:0045870 "positive regulation of retroviral genome replication" evidence=ISO
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO
GO:0046982 "protein heterodimerization activity" evidence=ISO
GO:0071107 "response to parathyroid hormone stimulus" evidence=IEP
GO:0000228 "nuclear chromosome" evidence=ISO
GO:0005814 "centriole" evidence=ISO
UNIPROTKB|E9PTY5 Top2a "DNA topoisomerase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M7A0 Top2a "DNA topoisomerase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAY8 TOP2A "DNA topoisomerase 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P41515 TOP2A "DNA topoisomerase 2-alpha" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
UNIPROTKB|E9PCY5 TOP2B "DNA topoisomerase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZF0 TOP2A "DNA topoisomerase 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P11388 TOP2A "DNA topoisomerase 2-alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O46374 TOP2A "DNA topoisomerase 2-alpha" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2F2 TOP2A "DNA topoisomerase 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P06786TOP2_YEAST5, ., 9, 9, ., 1, ., 30.56170.45730.1162yesN/A
O46374TOP2A_PIG5, ., 9, 9, ., 1, ., 30.76660.49580.1174yesN/A
P30182TOP2_ARATH5, ., 9, 9, ., 1, ., 30.53930.45730.1126yesN/A
P15348TOP2_DROME5, ., 9, 9, ., 1, ., 30.74440.49030.1230yesN/A
Q55BP5TOP2_DICDI5, ., 9, 9, ., 1, ., 30.54180.45450.1084yesN/A
P11388TOP2A_HUMAN5, ., 9, 9, ., 1, ., 30.76660.49580.1175yesN/A
O42131TOP2B_CHICK5, ., 9, 9, ., 1, ., 30.750.49580.1106yesN/A
P41516TOP2A_RAT5, ., 9, 9, ., 1, ., 30.77770.49580.1179yesN/A
P41515TOP2A_CRIGR5, ., 9, 9, ., 1, ., 30.77220.49580.1179yesN/A
O93794TOP2_CANGA5, ., 9, 9, ., 1, ., 30.53370.45730.1180yesN/A
P08096TOP2_SCHPO5, ., 9, 9, ., 1, ., 30.53930.45730.1117yesN/A
Q23670TOP2_CAEEL5, ., 9, 9, ., 1, ., 30.70550.49310.1177yesN/A
Q01320TOP2A_MOUSE5, ., 9, 9, ., 1, ., 30.76660.49580.1178yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.99.1.3LOW CONFIDENCE prediction!
3rd Layer5.99.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
PTZ00108 1388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 3e-88
PLN03128 1135 PLN03128, PLN03128, DNA topoisomerase 2; Provision 3e-78
PLN03237 1465 PLN03237, PLN03237, DNA topoisomerase 2; Provision 2e-70
smart00434 444 smart00434, TOP4c, DNA Topoisomerase IV 2e-41
PLN031281135 PLN03128, PLN03128, DNA topoisomerase 2; Provision 1e-38
PTZ00108 1388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 6e-37
PLN03237 1465 PLN03237, PLN03237, DNA topoisomerase 2; Provision 2e-35
cd00187 445 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; do 3e-35
smart00434444 smart00434, TOP4c, DNA Topoisomerase IV 3e-32
pfam00521 427 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase 1e-30
cd00187445 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; do 2e-28
pfam00521427 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase 1e-22
COG0188 804 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/ 7e-21
PHA02592 439 PHA02592, 52, DNA topisomerase II medium subunit; 6e-18
smart00433594 smart00433, TOP2c, TopoisomeraseII 6e-14
PRK09631 635 PRK09631, PRK09631, DNA topoisomerase IV subunit A 3e-07
PRK09630 479 PRK09630, PRK09630, DNA topoisomerase IV subunit A 3e-05
TIGR01063 800 TIGR01063, gyrA, DNA gyrase, A subunit 5e-05
COG0188 804 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/ 1e-04
PRK12758 869 PRK12758, PRK12758, DNA topoisomerase IV subunit A 4e-04
PHA02592439 PHA02592, 52, DNA topisomerase II medium subunit; 9e-04
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information 
 Score =  289 bits (741), Expect = 3e-88
 Identities = 111/178 (62%), Positives = 134/178 (75%), Gaps = 12/178 (6%)

Query: 11  GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
           GLGTST KE KEYFSN+++HRI F Y  D+DD  I +AFSKK V++RK W+T +      
Sbjct: 594 GLGTSTDKEGKEYFSNIDKHRIRFVYVDDSDDDSIDLAFSKKRVEDRKEWITNY------ 647

Query: 71  RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
             + G   D+    + K +TY++FVNKELILFS  DNERSIPSL DGLKPG RK+LF C 
Sbjct: 648 --KGGTYVDH----SKKKLTYSDFVNKELILFSIADNERSIPSLVDGLKPGQRKILFACF 701

Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
           KRN + E+KVAQL+G V+EHSAYHHGEQSL  TI+ +AQNFVGSNNINLL P GQFG+
Sbjct: 702 KRNLKNEIKVAQLSGYVSEHSAYHHGEQSLQQTIVGMAQNFVGSNNINLLYPCGQFGS 759

Length = 1388
>gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV Back     alignment and domain information
>gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II Back     alignment and domain information
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV Back     alignment and domain information
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A Back     alignment and domain information
>gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II Back     alignment and domain information
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A Back     alignment and domain information
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|222896 PHA02592, 52, DNA topisomerase II medium subunit; Provisional Back     alignment and domain information
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII Back     alignment and domain information
>gnl|CDD|236598 PRK09631, PRK09631, DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>gnl|CDD|170022 PRK09630, PRK09630, DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>gnl|CDD|233256 TIGR01063, gyrA, DNA gyrase, A subunit Back     alignment and domain information
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>gnl|CDD|222896 PHA02592, 52, DNA topisomerase II medium subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
PLN03237 1465 DNA topoisomerase 2; Provisional 100.0
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 100.0
PLN031281135 DNA topoisomerase 2; Provisional 100.0
PHA02592439 52 DNA topisomerase II medium subunit; Provisional 100.0
smart00434445 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisom 100.0
cd00187445 TOP4c DNA Topoisomerase, subtype IIA; domain A'; b 100.0
PF00521426 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subuni 100.0
TIGR01061 738 parC_Gpos DNA topoisomerase IV, A subunit, Gram-po 100.0
PRK05561 742 DNA topoisomerase IV subunit A; Validated 100.0
PRK05560 805 DNA gyrase subunit A; Validated 100.0
TIGR01063 800 gyrA DNA gyrase, A subunit. This model describes t 100.0
TIGR01062 735 parC_Gneg DNA topoisomerase IV, A subunit, proteob 100.0
PRK13979 957 DNA topoisomerase IV subunit A; Provisional 100.0
COG0188 804 GyrA Type IIA topoisomerase (DNA gyrase/topo II, t 100.0
KOG0355|consensus842 100.0
PRK09631 635 DNA topoisomerase IV subunit A; Provisional 100.0
PRK12758 869 DNA topoisomerase IV subunit A; Provisional 100.0
PRK09630479 DNA topoisomerase IV subunit A; Provisional 100.0
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 99.28
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 99.19
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 99.19
PRK05644638 gyrB DNA gyrase subunit B; Validated 99.07
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 98.99
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 98.43
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 97.41
PF0098665 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl term 95.0
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 93.29
KOG0355|consensus 842 88.34
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.9e-115  Score=959.58  Aligned_cols=342  Identities=50%  Similarity=0.762  Sum_probs=332.0

Q ss_pred             CCcceeeccccccCCcHHHHHHhhhhhcceeeeEEcCCCchHHHHHhcCCcchhhHHHHHHHhHHHhhhhhccCCccccc
Q psy11240          2 NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYL   81 (363)
Q Consensus         2 ~~w~iKYyKGLGTst~~eakeyF~~l~~h~~~f~~~~~~d~~~i~~aF~kk~~d~RK~Wl~~~~~~~~~~~~~~~~~~~l   81 (363)
                      ++|+||||||||||+++|++|||+||++|++.|.|.+++|+++|+|||||+++|+||+||++|.           ||+||
T Consensus       603 ~~~~IkyYKGLGe~~~~e~keyf~~~~~h~~~f~~~~~~~~~~i~laF~k~~~d~RK~Wl~~~~-----------~~~~l  671 (1465)
T PLN03237        603 TGWSIKYYKGLGTSTAKEGKEYFKNLGKHKKDFVWEDEQDGDAIELAFSKKKIEARKNWLRQYE-----------PGTHL  671 (1465)
T ss_pred             CceeeEeeccCCCCCHHHHHHHHHhHHhceEEEEECCCCcHHHHHHHhCCccHHHHHHHHHhCC-----------CCccc
Confidence            4799999999999999999999999999999999999999999999999999999999999997           99999


Q ss_pred             ccCcceeecHHHHHHHHHHHHHHhhccCCCCccccCCCCcceeeEeecccCCCCCceeeeeehhhhhhhccCCCCcchHH
Q psy11240         82 YTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLM  161 (363)
Q Consensus        82 ~d~~~~~i~~~dfinkeli~yS~~~~~RsIPsv~DGLKP~QRKILy~~~k~~~k~~~KvAql~G~Vse~~~YHHGe~Sl~  161 (363)
                       |++.+.|+|+||||+|||+|||+|+.||||||+||||||||||||+||++++++++|||||+|+|+|||+|||||+|||
T Consensus       672 -d~~~~~i~~~dfinkeli~ySm~~i~RAIP~v~DGLKPvQRkILya~~k~~~~~~~KvAqlvG~V~e~~~YHHGd~Sly  750 (1465)
T PLN03237        672 -DQTQKDVKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVAQLSGYVSEHSAYHHGEQSLA  750 (1465)
T ss_pred             -cCCCCcccHHHHHHHHHHHHHHHHHhccCCchhcCCCchHhHHHHHHHhcCCccccchhhhHHHHhhhccCCCcHHHHH
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccccccccccCCCCCccc----------eeec--CC------------------------------C-C
Q psy11240        162 STIINLAQNFVGSNNINLLQPIGQFGTFL----------FIFE--ST------------------------------N-L  198 (363)
Q Consensus       162 ~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~----------Yi~t--s~------------------------------P-i  198 (363)
                      +|||+||||||||||+|||+|+||||||+          ||||  ||                              | |
T Consensus       751 ~tiV~MAQdfvGsnnipLl~p~GnFGSR~~gG~daAA~RYietrLs~ia~~lf~~~Dd~~l~~~n~Dg~~iEP~~y~pii  830 (1465)
T PLN03237        751 STIIGMAQDFVGSNNINLLLPNGQFGTRLQGGKDHASARYIFTRLSPITRFLFPKDDDILLDYLNEDGQSIEPTWYMPII  830 (1465)
T ss_pred             HHHHHHhhccccccccceeecCCCCCCCCCCCCcccccccceechhHHHHHHhccCCccccCccCCCCcccCCceecCCC
Confidence            99999999999999999999999999986          9999  44                              6 9


Q ss_pred             ccccccCCCcccccc-----------------------------------------------------------------
Q psy11240        199 SGAVVNALDFGSGGW-----------------------------------------------------------------  213 (363)
Q Consensus       199 P~vLvNGa~GIgtG~-----------------------------------------------------------------  213 (363)
                      ||||||||+||||||                                                                 
T Consensus       831 P~lLVNGa~GIatG~sT~IPphNp~eVi~~i~~~i~~e~~~~~~P~~~gf~G~I~~~~~t~g~g~~~~rG~~~~~~~~~i  910 (1465)
T PLN03237        831 PTVLVNGAEGIGTGWSTFIPNYNPRDIVANIRRLLNGESMEPMHPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTL  910 (1465)
T ss_pred             cceeecCCcceecccccCCCCCCHHHHHHHHHHHhcCCCcCCCCCeecCCCceEeEhhhcCCCceEEEEEEEEEecCCeE
Confidence            999999999999999                                                                 


Q ss_pred             ----------c-------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhhccceeeeccceEE
Q psy11240        214 ----------R-------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMC  264 (363)
Q Consensus       214 ----------T-------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~fkL~~s~~~~nm~  264 (363)
                                |                   ..|.||+|+|++++|+|+|+|+++.+++++.++|+|.|+|+++++++||+
T Consensus       911 ~ITElP~~~~t~~y~~~le~i~~~~~~~k~~~I~d~~d~s~~~~vr~vI~lk~~~~~~~~~~~L~k~~kL~~s~~~~nm~  990 (1465)
T PLN03237        911 RITELPIRRWTDDYKEFLESLKTDNNKNKDPFIKDVKAYNDDTTVHFEVILSEENMLAAKQEGLLKKFKLTTTISTSNMH  990 (1465)
T ss_pred             EEEeCCCeecchHHHHHHHHHHHHHhccCcCceeechhccCCceEEEEEEeccchhHHHHHHHHHHhhcCcceeceeEEE
Confidence                      0                   05889999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEcccchHHHHHHHHHcC
Q psy11240        265 AFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRK  344 (363)
Q Consensus       265 lfd~~g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~k~k~~l~~~L~~~~  344 (363)
                      |||++|++++|.++.+||++||++|+++|++|+++++++++.++.+++||++||++||+|+|+|.+++|++|+++|.++|
T Consensus       991 l~d~~G~i~k~~~~~~Il~~F~~~Rl~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~l~~~L~~~g 1070 (1465)
T PLN03237        991 LFDSKGVIKKYDTPEQILEEFFHLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKADLVEELRQKG 1070 (1465)
T ss_pred             EEcCCCCcceeCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhhh
Q psy11240        345 YDSDPVKSWKM  355 (363)
Q Consensus       345 f~~~~~~~~k~  355 (363)
                      |+++|..+|..
T Consensus      1071 f~~~~~~~~~~ 1081 (1465)
T PLN03237       1071 FTPFPKKAKSV 1081 (1465)
T ss_pred             CCccchhhccc
Confidence            99999887754

>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PHA02592 52 DNA topisomerase II medium subunit; Provisional Back     alignment and domain information
>smart00434 TOP4c DNA Topoisomerase IV Back     alignment and domain information
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II Back     alignment and domain information
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive Back     alignment and domain information
>PRK05561 DNA topoisomerase IV subunit A; Validated Back     alignment and domain information
>PRK05560 DNA gyrase subunit A; Validated Back     alignment and domain information
>TIGR01063 gyrA DNA gyrase, A subunit Back     alignment and domain information
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial Back     alignment and domain information
>PRK13979 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0355|consensus Back     alignment and domain information
>PRK09631 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>PRK12758 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>PRK09630 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>KOG0355|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
4fm9_A 763 Human Topoisomerase Ii Alpha Bound To Dna Length = 2e-79
4fm9_A763 Human Topoisomerase Ii Alpha Bound To Dna Length = 2e-45
3qx3_A 803 Human Topoisomerase Iibeta In Complex With Dna And 2e-78
3qx3_A 803 Human Topoisomerase Iibeta In Complex With Dna And 1e-45
2rgr_A 759 Topoisomerase Iia Bound To G-segment Dna Length = 7 3e-48
2rgr_A 759 Topoisomerase Iia Bound To G-segment Dna Length = 7 5e-20
3l4j_A 722 Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 3e-48
3l4k_A722 Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 6e-20
1bgw_A 793 Topoisomerase Residues 410-1202 Length = 793 3e-48
1bgw_A 793 Topoisomerase Residues 410-1202 Length = 793 5e-20
4gfh_F 1099 Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 3e-46
4gfh_F1099 Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 5e-20
4gfh_A 1103 Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 4e-46
4gfh_A1103 Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 5e-20
3ifz_A 508 Crystal Structure Of The First Part Of The Mycobact 2e-04
3ilw_A 470 Structure Of Dna Gyrase Subunit A N-Terminal Domain 2e-04
2xco_A 726 The 3.1a Crystal Structure Of The Catalytic Core (B 4e-04
2xcr_B 726 The 3.5a Crystal Structure Of The Catalytic Core (B 4e-04
2xcs_B 692 The 2.1a Crystal Structure Of S. Aureus Gyrase Comp 5e-04
3lpx_A 500 Crystal Structure Of Gyra Length = 500 6e-04
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 Back     alignment and structure 
Iteration: 1

 Score =  292 bits (748), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/180 (76%), Positives = 157/180 (87%)
Query: 11  GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
           GLGTSTSKEAKEYF++M+RHRI FKYSG  DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 185 GLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKKQIDDRKEWLTNFMEDRRQ 244
Query: 71  RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
           RK +G+ EDYLY +TT  +TY +F+NKELILFSN DNERSIPS+ DGLKPG RKVLFTC 
Sbjct: 245 RKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCF 304
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
           KRND+REVKVAQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 305 KRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 364
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 Back     alignment and structure
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 Back     alignment and structure
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 Back     alignment and structure
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 Back     alignment and structure
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 Back     alignment and structure
>pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 722 Back     alignment and structure
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 Back     alignment and structure
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 Back     alignment and structure
>pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Breakage And Reunion Domain At 2.7 A Resolution Length = 508 Back     alignment and structure
>pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain Length = 470 Back     alignment and structure
>pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 Back     alignment and structure
>pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 Back     alignment and structure
>pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 Back     alignment and structure
>pdb|3LPX|A Chain A, Crystal Structure Of Gyra Length = 500 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3qx3_A 803 DNA topoisomerase 2-beta; toprim domain, winged-he 5e-52
3qx3_A 803 DNA topoisomerase 2-beta; toprim domain, winged-he 1e-48
3l4j_A 757 DNA topoisomerase 2; topoisomerase, protein-DNA co 1e-46
3l4j_A757 DNA topoisomerase 2; topoisomerase, protein-DNA co 2e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 Back     alignment and structure
 Score =  183 bits (466), Expect = 5e-52
 Identities = 134/178 (75%), Positives = 154/178 (86%)

Query: 11  GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
           GLGTST+KEAKEYF++MERHRILF+Y+G  DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 213 GLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQ 272

Query: 71  RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
           R+  G+ E +LY   TK +TY +F+NKELILFSN DNERSIPSL DG KPG RKVLFTC 
Sbjct: 273 RRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCF 332

Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
           KRND+REVKVAQLAGSVAE SAYHHGEQ+LM TI+NLAQNFVGSNNINLLQPIGQFGT
Sbjct: 333 KRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGT 390
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 Back     alignment and structure
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 Back     alignment and structure
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3qx3_A 803 DNA topoisomerase 2-beta; toprim domain, winged-he 100.0
3l4j_A 757 DNA topoisomerase 2; topoisomerase, protein-DNA co 100.0
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 100.0
2xkj_E767 Topoisomerase IV; type IIA topoisomerase; 2.20A {A 100.0
2xcs_B692 DNA gyrase subunit B, DNA gyrase subunit A; isomer 100.0
2inr_A514 DNA topoisomerase 4 subunit A; topoisomerase II fo 100.0
2nov_A496 DNA topoisomerase 4 subunit A; protein, PARC, TOPO 100.0
3lpx_A500 GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-b 100.0
3ilw_A470 DNA gyrase subunit A; DNA topology, topoisomerase, 100.0
1zvu_A 716 Topoisomerase IV subunit A; beta-pinwheel, ATPase, 100.0
3k9f_C268 DNA topoisomerase 4 subunit B; quinolone, topoisom 98.92
3m4i_A242 DNA gyrase subunit B; GYRB, toprim, type II topois 98.87
3ku8_A156 GYRA14, DNA gyrase subunit A; alpha+beta, SH3 doma 94.42
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-116  Score=925.57  Aligned_cols=357  Identities=64%  Similarity=1.003  Sum_probs=321.1

Q ss_pred             CCcceeeccccccCCcHHHHHHhhhhhcceeeeEEcCCCchHHHHHhcCCcchhhHHHHHHHhHHHhhhhhccCCccccc
Q psy11240          2 NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYL   81 (363)
Q Consensus         2 ~~w~iKYyKGLGTst~~eakeyF~~l~~h~~~f~~~~~~d~~~i~~aF~kk~~d~RK~Wl~~~~~~~~~~~~~~~~~~~l   81 (363)
                      ++|+|+||||||+++++|++|||.|+++|++.|.|.+++|+++|||||+|+++++||+||.++.+++++++++|+||+||
T Consensus       204 ~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~k~~~~~RK~wi~~~~~~~~~~~~~~~p~~~l  283 (803)
T 3qx3_A          204 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFL  283 (803)
T ss_dssp             ----------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred             CCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhcCCChHHHHHHHHHhhhhhccccccCCCcccc
Confidence            46999999999999999999999999999999999877889999999999999999999999999999999999999999


Q ss_pred             ccCcceeecHHHHHHHHHHHHHHhhccCCCCccccCCCCcceeeEeecccCCCCCceeeeeehhhhhhhccCCCCcchHH
Q psy11240         82 YTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLM  161 (363)
Q Consensus        82 ~d~~~~~i~~~dfinkeli~yS~~~~~RsIPsv~DGLKP~QRKILy~~~k~~~k~~~KvAql~G~Vse~~~YHHGe~Sl~  161 (363)
                      ||++++.|+|+||||+|||+|||+||.||||||+||||||||||||+|+++++++++|||||||+|||||+|||||+|+|
T Consensus       284 ~d~~~~~i~y~dFInkELi~FS~adn~RaiP~v~DGLKPvqRriLy~m~~~~~~~~~K~A~~vG~vse~~~YHHGd~siy  363 (803)
T 3qx3_A          284 YGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALM  363 (803)
T ss_dssp             -----CEEEHHHHHHHTHHHHHHHHHHHHSCBTTTSCCHHHHHHHHHHHHHCCSSCEEHHHHHHHHHHHHTCCSCHHHHH
T ss_pred             ccCccceeeHHHhhhHHHHHHHHHhhccCCCchhhCCCcccceeeHhhhccCCCCceeEEEEeeehhhhccCCCChHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccccccccccCCCCCccc----------eeec--CC------------------------------C-C
Q psy11240        162 STIINLAQNFVGSNNINLLQPIGQFGTFL----------FIFE--ST------------------------------N-L  198 (363)
Q Consensus       162 ~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~----------Yi~t--s~------------------------------P-i  198 (363)
                      +|||+|||+|+||||+|||+|+||||||+          ||||  ||                              | |
T Consensus       364 ~aiV~mAQ~f~GS~~~~Ll~~~GnFGsr~~~gd~aAA~RYte~rLs~~a~~l~~~~d~~~vd~~ydd~~~~EP~vlp~~i  443 (803)
T 3qx3_A          364 MTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYDDNQRVEPEWYIPII  443 (803)
T ss_dssp             HHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTSCEECBCTTHHHHSCHHHHTTSCEEEETTEEEEESCCCCSS
T ss_pred             HHHHHHhcchhhhccccccccCCCcCCCCCCCCcccchhhhheeccHHHHHHhhcccccccccccCCCcccccccccccC
Confidence            99999999999999999999999999984          9998  54                              5 9


Q ss_pred             ccccccCCCcccccc-----------------------------------------------------------------
Q psy11240        199 SGAVVNALDFGSGGW-----------------------------------------------------------------  213 (363)
Q Consensus       199 P~vLvNGa~GIgtG~-----------------------------------------------------------------  213 (363)
                      ||||||||+||||||                                                                 
T Consensus       444 P~lLvNGa~GIavGmaTnIPphNl~Evi~a~~~ll~~~~~~pd~P~~~gf~G~i~~tGrg~~~~rg~~~~~~~~~IvITE  523 (803)
T 3qx3_A          444 PMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITE  523 (803)
T ss_dssp             CHHHHTTCEEECSSCEEECCCCCHHHHHHHHHHHHTTCCCCCCCCCCTTCCSEEEEEETTEEEEECEEEEEETTEEEEEE
T ss_pred             CeeeecCCcceEeeeecCCCCCCHHHHHHHHHHHhcCCCCCCCCCccCCCcceEEecCCcEEEEEEEEEEecCCEEEEEE
Confidence            999999999999999                                                                 


Q ss_pred             ------c-------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhhccceeeeccceEEEEec
Q psy11240        214 ------R-------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDR  268 (363)
Q Consensus       214 ------T-------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~fkL~~s~~~~nm~lfd~  268 (363)
                            |                   .+|+||+|+||+++|||+|+|+++.+++++.++|++.|+||++|++|||+|||.
T Consensus       524 LPy~~~t~~~k~~lle~i~~~~~K~~~~I~d~rDes~~~gvrivI~Lk~~~~~~~vl~~Lyk~t~Lq~sf~~n~~~l~d~  603 (803)
T 3qx3_A          524 LPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDH  603 (803)
T ss_dssp             CCTTCCHHHHHHHTHHHHHHCCSSSCCCCSEEEECCCSSCCCEEEECCHHHHHHHHHHCHHHHTTCEEEEECCCEEEECT
T ss_pred             CCCccchhHHHHHHHHHHHhhcccCCcceeeccccCCCCceEEEEEEcCCchHHHHHHHHHHhcCCeEEeeceeEEEECC
Confidence                  0                   059999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEcccchHHHHHHHHHcCCCCC
Q psy11240        269 YGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSD  348 (363)
Q Consensus       269 ~g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~k~k~~l~~~L~~~~f~~~  348 (363)
                      +|++++|.|+.|||++|++||+++|+||++|+++++++++++|+||+|||++||+|+|+|.+++|++|+++|+++||+++
T Consensus       604 ~g~~pk~~~l~eiL~~F~~~R~ev~~rR~~~lL~kLq~el~kL~nk~rFI~~vi~g~l~i~nkkk~~li~eL~~~~f~~~  683 (803)
T 3qx3_A          604 MGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESD  683 (803)
T ss_dssp             TSCEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCCHHHHHHHHHHTTCCSC
T ss_pred             CCCcceeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecCCcHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cchhhhhhhh
Q psy11240        349 PVKSWKMKQN  358 (363)
Q Consensus       349 ~~~~~k~~~~  358 (363)
                      |+++|++.++
T Consensus       684 p~~~~~~~~~  693 (803)
T 3qx3_A          684 PVKAWKEAQE  693 (803)
T ss_dssp             HHHHHHHHCC
T ss_pred             Cchhhhhhhc
Confidence            9999987664
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Back     alignment and structure
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Back     alignment and structure
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Back     alignment and structure
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A* Back     alignment and structure
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A Back     alignment and structure
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A* Back     alignment and structure
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli} Back     alignment and structure
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Back     alignment and structure
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d1bjta_ 760 e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra 2e-27
d1bjta_ 760 e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra 3e-14
d1ab4a_ 493 e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxI 7e-27
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 2e-27
 Identities = 96/181 (53%), Positives = 118/181 (65%), Gaps = 12/181 (6%)

Query: 11  GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
           GLGTS ++E +EYFSN++RH  +F     ND  +I +AFSKK  D+RK WL  +      
Sbjct: 186 GLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGT-- 243

Query: 71  RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
                     +   T K I  ++F+NKELILFS  DN RSIP++ DG KPG RKVL+ C 
Sbjct: 244 ----------VLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCF 293

Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
           K+N + E+KVAQLA  V+E +AYHHGEQSL  TII LAQNFVGSNNI LL P G FGT  
Sbjct: 294 KKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRA 353

Query: 191 F 191
            
Sbjct: 354 T 354
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 Back     information, alignment and structure
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 493 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d1bjta_ 760 DNA topoisomerase II, C-terminal fragment (residue 100.0
d1ab4a_493 DNA Gyrase A {Escherichia coli [TaxId: 562]} 100.0
d1x75a1132 DNA Gyrase A {Escherichia coli [TaxId: 562]} 86.49
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-102  Score=824.17  Aligned_cols=337  Identities=45%  Similarity=0.683  Sum_probs=287.7

Q ss_pred             CCcceeeccccccCCcHHHHHHhhhhhcceeeeEEcCCCchHHHHHhcCCcchhhHHHHHHHhHHHhhhhhccCCccccc
Q psy11240          2 NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYL   81 (363)
Q Consensus         2 ~~w~iKYyKGLGTst~~eakeyF~~l~~h~~~f~~~~~~d~~~i~~aF~kk~~d~RK~Wl~~~~~~~~~~~~~~~~~~~l   81 (363)
                      ++|+||||||||||+++|++|||.++++|++.|.+.+++|.++|++||+|+++|+||+||.+|.           |++++
T Consensus       177 ~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~F~k~~~d~RKewl~~~~-----------~~~~~  245 (760)
T d1bjta_         177 FTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYE-----------PGTVL  245 (760)
T ss_dssp             SCEEECCCCCCSTTHHHHHHHHHHHHHHHHHHHHHCC---------------------CCCCSC-----------C----
T ss_pred             cccchhcccccccccchhhHHHhcccccccceeEeccchhHHHHHHHHhhcccchHHHHHhhcc-----------ccccc
Confidence            4799999999999999999999999999999999888899999999999999999999999997           78888


Q ss_pred             ccCcceeecHHHHHHHHHHHHHHhhccCCCCccccCCCCcceeeEeecccCCCCCceeeeeehhhhhhhccCCCCcchHH
Q psy11240         82 YTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLM  161 (363)
Q Consensus        82 ~d~~~~~i~~~dfinkeli~yS~~~~~RsIPsv~DGLKP~QRKILy~~~k~~~k~~~KvAql~G~Vse~~~YHHGe~Sl~  161 (363)
                       |++...++|+|||++||++|||+|+.|||||++||||||||||||+|++++++.+.||||+||+|+|+++|||||+|||
T Consensus       246 -~~~~~~~~~~~~~~~~~~~~s~~~~~RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~v~~~~~yhHGe~sl~  324 (760)
T d1bjta_         246 -DPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLA  324 (760)
T ss_dssp             ------------CCTHHHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHHHHTCCSCEEHHHHHHHHHHHHTCCSSSCCHH
T ss_pred             -cccccceeHHHHHHHHHHHHHHHHHhccCCchhhcccHHHHHHHHHHHHhcCCCCCccccccchhhhhhcCCCCCcchh
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccccccccccCCCCCccc----------eeec--CC------------------------------C-C
Q psy11240        162 STIINLAQNFVGSNNINLLQPIGQFGTFL----------FIFE--ST------------------------------N-L  198 (363)
Q Consensus       162 ~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~----------Yi~t--s~------------------------------P-i  198 (363)
                      +|||+|||+||||||+|||+|+||||||.          ||||  ||                              | |
T Consensus       325 ~aiv~maQ~f~gsnn~~ll~~~G~fGsr~~~g~~~AA~RYietrLs~~~~~lf~~~D~~~l~~~~~dg~~iEP~~y~pii  404 (760)
T d1bjta_         325 QTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPIL  404 (760)
T ss_dssp             HHHHHHHCCSTTSCSSCSEEEESCCCCTTTTSTTCCCGGGCEEEECTTHHHHSCGGGGGGSCEEEETTEEEEESCCCCSS
T ss_pred             HHHHHHHhhhhhcceeeeeeccCCccccCCCCCcchHHHHHHhhHHHHHHHHhcccccceeecccCCCceeCcccchhHH
Confidence            99999999999999999999999999987          9999  54                              6 9


Q ss_pred             ccccccCCCcccccc---------------------------------------------------------------c-
Q psy11240        199 SGAVVNALDFGSGGW---------------------------------------------------------------R-  214 (363)
Q Consensus       199 P~vLvNGa~GIgtG~---------------------------------------------------------------T-  214 (363)
                      ||||||||+||||||                                                               | 
T Consensus       405 P~lLvNGs~GIatG~aT~IPphNp~eVi~~i~~~i~~~~~~~~~P~~~Gf~G~i~~~~~g~~~~~g~~e~~~~~~I~ITE  484 (760)
T d1bjta_         405 PMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITE  484 (760)
T ss_dssp             CHHHHTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCCCCCCBCCTTCCSEEEEEETTEEEEECEEEEEETTEEEEEE
T ss_pred             HHHHHhhhhhhhhhhhhccCcccHHHHHHHHHHHhCCchhhccCCCccccccccccccccceEEEEEEeecCCCeEEEEe
Confidence            999999999999999                                                               0 


Q ss_pred             -------------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhhccceeeeccceEEEEecC
Q psy11240        215 -------------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRY  269 (363)
Q Consensus       215 -------------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~fkL~~s~~~~nm~lfd~~  269 (363)
                                               ..|.+++|+| +++|+|+|+++++..++.+.++|++.|+|+++++++||++||++
T Consensus       485 LP~gvwt~~~~E~i~~ll~~~~K~~~~i~d~~d~s-~~~Vr~vI~lk~~~~~~~~~~~l~k~~kL~~s~s~~Nm~l~d~~  563 (760)
T d1bjta_         485 LPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQH-DDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPH  563 (760)
T ss_dssp             CCTTCCHHHHHHHHHHHHSCCTTSCCCCCEEEECC-SSSCCEEEECCHHHHHHHHHHCHHHHTTCEEEEECTTEEEECTT
T ss_pred             ccccchhhhHHHHHHHHHhcccccCcccchhhccc-cccceeEEEecccccccchhhhhhhhhhhhhhhhhcceeEEcCC
Confidence                                     0477777754 56899999999999999999999999999999999999999999


Q ss_pred             CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEcccchHHHHHHHHHcCCCCCC
Q psy11240        270 GVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSDP  349 (363)
Q Consensus       270 g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~k~k~~l~~~L~~~~f~~~~  349 (363)
                      |++++|.|+.|||++|+++|+++|++|++|++++++.++++|+|+++||++++++.|.|.++++++|+++|++.||.+++
T Consensus       564 g~i~k~~sl~eIL~~f~~~Rle~y~kRk~~~l~~l~~el~~l~~k~rFI~~vi~~~I~I~~~~kdeIi~~L~~~~~~k~~  643 (760)
T d1bjta_         564 GKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFN  643 (760)
T ss_dssp             SCEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCTTCCHHHHHHHHHHTTCCEEC
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhheeeeecCCHHHHHHHHHhCCCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             ch
Q psy11240        350 VK  351 (363)
Q Consensus       350 ~~  351 (363)
                      ..
T Consensus       644 k~  645 (760)
T d1bjta_         644 KE  645 (760)
T ss_dssp             TT
T ss_pred             hh
Confidence            53
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]} Back     information, alignment and structure