Psyllid ID: psy11267

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYLT
cccccccccccccHHHHHHHHHccccEEEccccccccHHHHHHHHHHcccEEEcccccHHHHHHHHHHccccEEEEcccccccccccccccHHHHHHHccccc
EEEEEcHHHHcccHHHHHHHHHccEEEEEcccccccccHHHHHHHHHHccEEEcccEcHHHHHHHHHHcccccEEccccEcccccccccEcHHHHHHHHHHcc
migvegghslGNSMAVLRMFYKLGVRYLTlthacptpwyLVVRECNRLGMLIDLSHTSVQTMRHVLnissapvifshssafalcpsprnvpdpvlklvfpylt
migvegghslgNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFalcpsprnvpdpvLKLVFPYLT
MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYLT
***********NSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY**
MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFP***
MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYLT
MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYLT
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
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MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query103 2.2.26 [Sep-21-2011]
P31429 410 Dipeptidase 1 OS=Oryctola yes N/A 0.951 0.239 0.541 9e-31
Q5M872 481 Dipeptidase 2 OS=Rattus n yes N/A 0.951 0.203 0.558 5e-30
P16444 411 Dipeptidase 1 OS=Homo sap yes N/A 0.951 0.238 0.541 1e-29
P22412 409 Dipeptidase 1 OS=Sus scro yes N/A 0.951 0.239 0.533 2e-29
P43477 410 Dipeptidase 1 OS=Ovis ari N/A N/A 0.951 0.239 0.525 3e-29
Q8C255 478 Dipeptidase 2 OS=Mus musc yes N/A 0.951 0.205 0.541 6e-29
Q3SZM7 410 Dipeptidase 1 OS=Bos taur yes N/A 0.951 0.239 0.516 6e-29
P31428 410 Dipeptidase 1 OS=Mus musc yes N/A 0.951 0.239 0.558 7e-29
P31430 410 Dipeptidase 1 OS=Rattus n no N/A 0.951 0.239 0.533 7e-29
Q9H4A9 486 Dipeptidase 2 OS=Homo sap no N/A 0.951 0.201 0.516 4e-27
>sp|P31429|DPEP1_RABIT Dipeptidase 1 OS=Oryctolagus cuniculus GN=DPEP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  132 bits (331), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 79/120 (65%), Gaps = 22/120 (18%)

Query: 1   MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------------- 38
           +IGVEGGHS+ +S+ VLR  Y+LG+RYLTLTH C TPW                      
Sbjct: 137 LIGVEGGHSIDSSLGVLRALYRLGMRYLTLTHNCNTPWADNWLVDRGDDEAQSGGLSVFG 196

Query: 39  YLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
             VVRE NRLG++IDL+H SV TM+  L +S+APVIFSHSSAF +C   RNVPD VL+LV
Sbjct: 197 QRVVREMNRLGVMIDLAHVSVATMKAALQLSTAPVIFSHSSAFTVCAHKRNVPDDVLQLV 256
Hydrolyzes a wide range of dipeptides. Implicated in the renal metabolism of glutathione and its conjugates. Converts leukotriene D4 to leukotriene E4; it may play an important role in the regulation of leukotriene activity.
Oryctolagus cuniculus (taxid: 9986)
EC: 3EC: .EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 9
>sp|Q5M872|DPEP2_RAT Dipeptidase 2 OS=Rattus norvegicus GN=Dpep2 PE=2 SV=1 Back     alignment and function description
>sp|P16444|DPEP1_HUMAN Dipeptidase 1 OS=Homo sapiens GN=DPEP1 PE=1 SV=3 Back     alignment and function description
>sp|P22412|DPEP1_PIG Dipeptidase 1 OS=Sus scrofa GN=DPEP1 PE=1 SV=1 Back     alignment and function description
>sp|P43477|DPEP1_SHEEP Dipeptidase 1 OS=Ovis aries GN=DPEP1 PE=1 SV=1 Back     alignment and function description
>sp|Q8C255|DPEP2_MOUSE Dipeptidase 2 OS=Mus musculus GN=Dpep2 PE=1 SV=1 Back     alignment and function description
>sp|Q3SZM7|DPEP1_BOVIN Dipeptidase 1 OS=Bos taurus GN=DPEP1 PE=2 SV=1 Back     alignment and function description
>sp|P31428|DPEP1_MOUSE Dipeptidase 1 OS=Mus musculus GN=Dpep1 PE=1 SV=2 Back     alignment and function description
>sp|P31430|DPEP1_RAT Dipeptidase 1 OS=Rattus norvegicus GN=Dpep1 PE=2 SV=2 Back     alignment and function description
>sp|Q9H4A9|DPEP2_HUMAN Dipeptidase 2 OS=Homo sapiens GN=DPEP2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query103
242007636 428 Dipeptidase 1 precursor, putative [Pedic 0.951 0.228 0.583 2e-33
321469795 379 hypothetical protein DAPPUDRAFT_50893 [D 0.951 0.258 0.566 6e-33
321470004 403 hypothetical protein DAPPUDRAFT_303754 [ 0.932 0.238 0.550 2e-32
321469800 417 hypothetical protein DAPPUDRAFT_211780 [ 0.951 0.235 0.566 3e-32
322801213 436 hypothetical protein SINV_00561 [Solenop 0.932 0.220 0.603 4e-32
383858261 441 PREDICTED: dipeptidase 1-like [Megachile 0.932 0.217 0.603 4e-32
307202636 426 Dipeptidase 2 [Harpegnathos saltator] 0.932 0.225 0.603 4e-32
156546232 425 PREDICTED: dipeptidase 1-like [Nasonia v 0.932 0.225 0.594 5e-32
91094013 459 PREDICTED: similar to RE32966p, partial 0.951 0.213 0.605 7e-32
270003131 467 hypothetical protein TcasGA2_TC001564 [T 0.951 0.209 0.605 8e-32
>gi|242007636|ref|XP_002424639.1| Dipeptidase 1 precursor, putative [Pediculus humanus corporis] gi|212508105|gb|EEB11901.1| Dipeptidase 1 precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/120 (58%), Positives = 83/120 (69%), Gaps = 22/120 (18%)

Query: 1   MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY--------------------- 39
           +IGVEGGHS+GNS+A+LR+FY LGVRYLTLTH C TPW                      
Sbjct: 167 LIGVEGGHSIGNSLAILRIFYDLGVRYLTLTHTCNTPWADSSSVEHRLKFPQNGGLTNFG 226

Query: 40  -LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
             VV+E NRLGM++DLSHTSV TM+ VL  + AP+IFSHSSA ALC + RNVPD +LKLV
Sbjct: 227 KAVVKEMNRLGMMVDLSHTSVSTMKDVLETTEAPIIFSHSSAHALCNTSRNVPDDILKLV 286

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|321469795|gb|EFX80774.1| hypothetical protein DAPPUDRAFT_50893 [Daphnia pulex] Back     alignment and taxonomy information
>gi|321470004|gb|EFX80982.1| hypothetical protein DAPPUDRAFT_303754 [Daphnia pulex] Back     alignment and taxonomy information
>gi|321469800|gb|EFX80779.1| hypothetical protein DAPPUDRAFT_211780 [Daphnia pulex] Back     alignment and taxonomy information
>gi|322801213|gb|EFZ21903.1| hypothetical protein SINV_00561 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383858261|ref|XP_003704620.1| PREDICTED: dipeptidase 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307202636|gb|EFN81957.1| Dipeptidase 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|156546232|ref|XP_001604934.1| PREDICTED: dipeptidase 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|91094013|ref|XP_966938.1| PREDICTED: similar to RE32966p, partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270003131|gb|EEZ99578.1| hypothetical protein TcasGA2_TC001564 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query103
UNIPROTKB|G5API2 410 GW7_12426 "Dipeptidase 1" [Het 0.563 0.141 0.724 1.5e-30
UNIPROTKB|H0WCB5 410 DPEP1 "Uncharacterized protein 0.563 0.141 0.706 5.4e-30
UNIPROTKB|G1S0Z6 309 DPEP1 "Uncharacterized protein 0.563 0.187 0.672 6e-30
UNIPROTKB|I3L719 409 DPEP1 "Dipeptidase 1" [Sus scr 0.563 0.141 0.689 1.9e-29
UNIPROTKB|P22412 409 DPEP1 "Dipeptidase 1" [Sus scr 0.563 0.141 0.689 1.9e-29
UNIPROTKB|H0WQU6 407 DPEP1 "Uncharacterized protein 0.563 0.142 0.672 3.4e-29
RGD|1305746 481 Dpep2 "dipeptidase 2" [Rattus 0.563 0.120 0.620 3.5e-29
FB|FBgn0039420 434 CG6154 [Drosophila melanogaste 0.572 0.135 0.644 3.6e-29
UNIPROTKB|P16444 411 DPEP1 "Dipeptidase 1" [Homo sa 0.563 0.141 0.672 3.6e-29
UNIPROTKB|F1NQJ0 413 DPEP2 "Uncharacterized protein 0.543 0.135 0.678 4.2e-29
UNIPROTKB|G5API2 GW7_12426 "Dipeptidase 1" [Heterocephalus glaber (taxid:10181)] Back     alignment and assigned GO terms
 Score = 211 (79.3 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
 Identities = 42/58 (72%), Positives = 49/58 (84%)

Query:    41 VVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
             VVRE NRLG++IDL+HTSV TMR  L +SSAPVIFSHSSA+ LCP  RNVP+ VL+LV
Sbjct:   199 VVREMNRLGIMIDLAHTSVATMRAALELSSAPVIFSHSSAYQLCPHKRNVPNDVLQLV 256
GO:0005886 "plasma membrane" evidence=ISS
GO:0008270 "zinc ion binding" evidence=ISS
GO:0016999 "antibiotic metabolic process" evidence=ISS
GO:0030336 "negative regulation of cell migration" evidence=ISS
GO:0035690 "cellular response to drug" evidence=ISS
GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=ISS
GO:0043066 "negative regulation of apoptotic process" evidence=ISS
GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISS
GO:0045177 "apical part of cell" evidence=ISS
GO:0050667 "homocysteine metabolic process" evidence=ISS
GO:0070573 "metallodipeptidase activity" evidence=ISS
GO:0072341 "modified amino acid binding" evidence=ISS
UNIPROTKB|H0WCB5 DPEP1 "Uncharacterized protein" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|G1S0Z6 DPEP1 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)] Back     alignment and assigned GO terms
UNIPROTKB|I3L719 DPEP1 "Dipeptidase 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P22412 DPEP1 "Dipeptidase 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|H0WQU6 DPEP1 "Uncharacterized protein" [Otolemur garnettii (taxid:30611)] Back     alignment and assigned GO terms
RGD|1305746 Dpep2 "dipeptidase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0039420 CG6154 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P16444 DPEP1 "Dipeptidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQJ0 DPEP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P31428DPEP1_MOUSE3, ., 4, ., 1, 3, ., 1, 90.55830.95140.2390yesN/A
P31429DPEP1_RABIT3, ., 4, ., 1, 3, ., 1, 90.54160.95140.2390yesN/A
Q8C255DPEP2_MOUSE3, ., 4, ., 1, 3, ., 1, 90.54160.95140.2050yesN/A
Q5M872DPEP2_RAT3, ., 4, ., 1, 3, ., 1, 90.55830.95140.2037yesN/A
Q3SZM7DPEP1_BOVIN3, ., 4, ., 1, 3, ., 1, 90.51660.95140.2390yesN/A
P16444DPEP1_HUMAN3, ., 4, ., 1, 3, ., 1, 90.54160.95140.2384yesN/A
P22412DPEP1_PIG3, ., 4, ., 1, 3, ., 1, 90.53330.95140.2396yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.13.19LOW CONFIDENCE prediction!
3rd Layer3.4.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query103
cd01301309 cd01301, rDP_like, renal dipeptidase (rDP), best s 1e-47
pfam01244316 pfam01244, Peptidase_M19, Membrane dipeptidase (Pe 2e-47
COG2355313 COG2355, COG2355, Zn-dependent dipeptidase, micros 1e-33
>gnl|CDD|238626 cd01301, rDP_like, renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics Back     alignment and domain information 
 Score =  153 bits (389), Expect = 1e-47
 Identities = 53/114 (46%), Positives = 70/114 (61%), Gaps = 16/114 (14%)

Query: 1   MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW----------------YLVVRE 44
           +I +EG H+LG  +A+LR+ Y+LGVRYL LT      +                  +VRE
Sbjct: 103 IISIEGAHALGGDLALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVRE 162

Query: 45  CNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
            NRLG++IDLSH S +T   VL+IS+APVI SHS+A ALC  PRN+ D  LK +
Sbjct: 163 MNRLGIIIDLSHLSERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAI 216

Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism. Length = 309
>gnl|CDD|216386 pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19) Back     alignment and domain information
>gnl|CDD|225230 COG2355, COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 103
PF01244320 Peptidase_M19: Membrane dipeptidase (Peptidase fam 100.0
COG2355313 Zn-dependent dipeptidase, microsomal dipeptidase h 100.0
cd01301309 rDP_like renal dipeptidase (rDP), best studied in 100.0
KOG4127|consensus 419 100.0
PRK13397250 3-deoxy-7-phosphoheptulonate synthase; Provisional 93.05
PF13344101 Hydrolase_6: Haloacid dehalogenase-like hydrolase; 92.83
cd01292275 metallo-dependent_hydrolases Superfamily of metall 90.28
PRK13753 279 dihydropteroate synthase; Provisional 88.23
COG2876286 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( 87.69
PRK12457281 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi 87.52
TIGR01362258 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. 85.58
PRK05198264 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi 85.35
cd01311263 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) 85.21
COG0647 269 NagD Predicted sugar phosphatases of the HAD super 83.06
PRK13618163 psbV cytochrome c-550; Provisional 80.34
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information 
Probab=100.00  E-value=1.2e-43  Score=277.85  Aligned_cols=101  Identities=50%  Similarity=0.784  Sum_probs=89.9

Q ss_pred             CcccccccccCCcHHHHHHHHHcCccEEeeccCCCCchH------------------HHHHHHHhcCCeeeccCCCHHHH
Q psy11267          1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY------------------LVVRECNRLGMLIDLSHTSVQTM   62 (103)
Q Consensus         1 ~l~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~------------------~~i~~mn~lGmiiDlSH~s~~t~   62 (103)
                      ++++||+++|++|++.|+.||++|||++|||||+.|.||                  ++|+|||++||+||+||+|++||
T Consensus       107 il~iEg~~~l~~~l~~l~~~y~lGvR~~~Lt~n~~N~~a~g~~~~~~~~~GLT~~G~~vV~~mn~lGm~vDvSH~s~~t~  186 (320)
T PF01244_consen  107 ILGIEGAHALGGDLERLDEFYDLGVRYIGLTWNYRNELADGCGEPGNRDGGLTPFGREVVREMNRLGMLVDVSHLSEKTF  186 (320)
T ss_dssp             EEEEESCGGGTTTHHHHHHHHHTTEEEEES-SSSBBSSBBBTTSTTTTSSSB-HHHHHHHHHHHHHT-EEE-TTB-HHHH
T ss_pred             EEEeeccccccCCHHHHHHHHHcCCEEEEEeecCCCccccccccccccCCCcChHHHHHHHHHHHcCCeeeeccCCHHHH
Confidence            589999999999999999999999999999999987766                  99999999999999999999999


Q ss_pred             HHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267         63 RHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY  101 (103)
Q Consensus        63 ~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~  101 (103)
                      +|+++.+++|||+||||||++|+|||||||||||+|+++
T Consensus       187 ~Dv~~~s~~PviaSHSn~ral~~h~RNltDe~iraia~~  225 (320)
T PF01244_consen  187 WDVLEISKKPVIASHSNARALCPHPRNLTDEQIRAIAER  225 (320)
T ss_dssp             HHHHHH-SSEEEECCEEBTTTS--TTSB-HHHHHHHHHT
T ss_pred             HHHHhhcCCCEEEeccChHhhCCCCCCCCHHHHHHHHHC
Confidence            999999999999999999999999999999999999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism] Back     alignment and domain information
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics Back     alignment and domain information
>KOG4127|consensus Back     alignment and domain information
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional Back     alignment and domain information
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A Back     alignment and domain information
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site Back     alignment and domain information
>PRK13753 dihydropteroate synthase; Provisional Back     alignment and domain information
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional Back     alignment and domain information
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase Back     alignment and domain information
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional Back     alignment and domain information
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) Back     alignment and domain information
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13618 psbV cytochrome c-550; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query103
1itq_A 369 Human Renal Dipeptidase Length = 369 5e-31
3id7_A 400 Crystal Structure Of Renal Dipeptidase From Strepto 2e-27
3ly0_A 364 Crystal Structure Of Metallo Peptidase From Rhodoba 3e-10
3fdg_A355 The Crystal Structure Of The Dipeptidase Ac, Metall 3e-10
2rag_A 417 Crystal Structure Of Aminohydrolase From Caulobacte 2e-07
3b40_A 417 Crystal Structure Of The Probable Dipeptidase Pvdm 1e-05
2i5g_A 325 Crystal Strcuture Of Amidohydrolase From Pseudomona 1e-05
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 22/120 (18%)
Query: 1   MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------------- 38
           +IGVEGGHS+ +S+ VLR  Y+LG+RYLTLTH+C TPW                      
Sbjct: 121 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG 180
Query: 39  YLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
             VV+E NRLG+LIDL+H SV TM+  L +S APVIFSHSSA+++C S RNVPD VL+LV
Sbjct: 181 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240
>pdb|3ID7|A Chain A, Crystal Structure Of Renal Dipeptidase From Streptomyces Coelicolor A3(2) Length = 400 Back     alignment and structure
>pdb|3LY0|A Chain A, Crystal Structure Of Metallo Peptidase From Rhodobacter Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide L- Ala-D-Ala Length = 364 Back     alignment and structure
>pdb|3FDG|A Chain A, The Crystal Structure Of The Dipeptidase Ac, Metallo Peptidase. Merops Family M19 Length = 355 Back     alignment and structure
>pdb|2RAG|A Chain A, Crystal Structure Of Aminohydrolase From Caulobacter Crescentus Length = 417 Back     alignment and structure
>pdb|3B40|A Chain A, Crystal Structure Of The Probable Dipeptidase Pvdm From Pseudomonas Aeruginosa Length = 417 Back     alignment and structure
>pdb|2I5G|A Chain A, Crystal Strcuture Of Amidohydrolase From Pseudomonas Aeruginosa Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query103
3ly0_A 364 Dipeptidase AC. metallo peptidase. merops family M 9e-54
1itu_A 369 Renal dipeptidase; glycoprotein, membrane-bound, z 3e-53
2i5g_A 325 Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, stru 7e-52
3neh_A318 Renal dipeptidase family protein; structural genom 1e-51
3id7_A 400 Dipeptidase; streptomyces coelicolor A3(2), hydrol 2e-50
2rag_A 417 Dipeptidase; aminohydrolase, structural genomics, 1e-48
3b40_A 417 PVDM, probable dipeptidase; structural genomics, h 1e-48
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A Length = 364 Back     alignment and structure
 Score =  170 bits (432), Expect = 9e-54
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 22/120 (18%)

Query: 1   MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------------- 38
           ++ +EG  ++G  +  L +F+ LG+R L    + PT +                      
Sbjct: 135 IMHMEGAEAIGADLDALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEGLTEAG 194

Query: 39  YLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
             +V ECNRL +++DLSH + +    V  +S AP++ +HS+A A+ PS RN+ D  L ++
Sbjct: 195 RRLVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPSTRNLTDRQLAMI 254
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A* Length = 369 Back     alignment and structure
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa} Length = 325 Back     alignment and structure
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A Length = 318 Back     alignment and structure
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A* Length = 400 Back     alignment and structure
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus} Length = 417 Back     alignment and structure
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 417 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query103
3neh_A318 Renal dipeptidase family protein; structural genom 100.0
3id7_A 400 Dipeptidase; streptomyces coelicolor A3(2), hydrol 100.0
3ly0_A 364 Dipeptidase AC. metallo peptidase. merops family M 100.0
3b40_A 417 PVDM, probable dipeptidase; structural genomics, h 100.0
2rag_A 417 Dipeptidase; aminohydrolase, structural genomics, 100.0
1itu_A 369 Renal dipeptidase; glycoprotein, membrane-bound, z 100.0
2i5g_A 325 Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, stru 100.0
2ffi_A288 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; 96.25
4i6k_A294 Amidohydrolase family protein; enzyme function ini 92.18
3ngf_A 269 AP endonuclease, family 2; structural genomics, se 85.13
2vc7_A314 Aryldialkylphosphatase; phosphotriesterase, promis 84.77
1zco_A262 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin 80.21
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A Back     alignment and structure
Probab=100.00  E-value=1.4e-44  Score=282.51  Aligned_cols=100  Identities=28%  Similarity=0.357  Sum_probs=97.4

Q ss_pred             CcccccccccCCcHHHHHHHHHcCccEEeeccCCCCchH----------------HHHHHHHhcCCeeeccCCCHHHHHH
Q psy11267          1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY----------------LVVRECNRLGMLIDLSHTSVQTMRH   64 (103)
Q Consensus         1 ~l~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~----------------~~i~~mn~lGmiiDlSH~s~~t~~d   64 (103)
                      +|++||+++|++|++.|+.||++|||+||||||++|.||                ++|+|||++||+||+||+|++||||
T Consensus       103 ~l~iEg~~~i~~~l~~L~~~y~lGvR~~~Lt~n~~N~~a~g~~~~~~~GLT~~G~~vV~eMnrlGmivDlSH~s~~t~~d  182 (318)
T 3neh_A          103 MLTLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIMEERGAGLTRFGKDIIHLLNERKVFTDVSHLSVKAFWE  182 (318)
T ss_dssp             EEEEESSGGGTTCHHHHHHHHHTTEEEEESCSSSBCSSBBBTTCTTCCCBCHHHHHHHHHHHHHTCEEECTTBCHHHHHH
T ss_pred             EEeeechhhcCCCHHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCChhhHHHHHHHHHcCCeEEcCCCCHHHHHH
Confidence            589999999999999999999999999999999998877                9999999999999999999999999


Q ss_pred             HHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267         65 VLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY  101 (103)
Q Consensus        65 ~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~  101 (103)
                      +++.|++| |+||||||++|+||||+||||||+|+++
T Consensus       183 vl~~s~~P-iaSHSnaral~~h~RNl~D~~l~ala~~  218 (318)
T 3neh_A          183 TLEQAEFV-IASHSNAKAICSHPRNLDDEQIKAMIEH  218 (318)
T ss_dssp             HHHHCSSE-EESSCCBTTTSCCTTSBCHHHHHHHHHT
T ss_pred             HHHhcCCC-cccccchhhcCCCCCCCCHHHHHHHHHc
Confidence            99999999 9999999999999999999999999975
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A* Back     alignment and structure
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A Back     alignment and structure
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} Back     alignment and structure
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus} Back     alignment and structure
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A* Back     alignment and structure
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa} Back     alignment and structure
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 Back     alignment and structure
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} Back     alignment and structure
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 Back     alignment and structure
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* Back     alignment and structure
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 103
d1itua_ 369 c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapien 3e-18
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]} Length = 369 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Renal dipeptidase
domain: Renal dipeptidase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 3e-18
 Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 22/120 (18%)

Query: 1   MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------------- 38
           +IGVEGGHS+ +S+ VLR  Y+LG+RYLTLTH+C TPW                      
Sbjct: 121 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG 180

Query: 39  YLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
             VV+E NRLG+LIDL+H SV TM+  L +S APVIFSHSSA+++C S RNVPD VL+LV
Sbjct: 181 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query103
d1itua_ 369 Renal dipeptidase {Human (Homo sapiens) [TaxId: 96 100.0
d1h1oa182 Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9 80.29
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Renal dipeptidase
domain: Renal dipeptidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-42  Score=273.14  Aligned_cols=101  Identities=64%  Similarity=1.071  Sum_probs=98.0

Q ss_pred             CcccccccccCCcHHHHHHHHHcCccEEeeccCCCCchH----------------------HHHHHHHhcCCeeeccCCC
Q psy11267          1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY----------------------LVVRECNRLGMLIDLSHTS   58 (103)
Q Consensus         1 ~l~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~----------------------~~i~~mn~lGmiiDlSH~s   58 (103)
                      ++++||+++|+++++.|+.||++|||+++||||++|+||                      ++|+|||++||+||+||+|
T Consensus       121 il~iEg~~~l~~dl~~L~~~y~lGvR~i~Lt~n~~N~~a~~~~~~~g~~~~~~~GLt~~G~~~V~emn~lGmiiDlSH~s  200 (369)
T d1itua_         121 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVS  200 (369)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHTTEEEEESCSSSCCSSBCBGGGGGTSSCCSSSSBCHHHHHHHHHHHHHTCEEECTTBC
T ss_pred             EecccccccccccHHHHHHHHhcCceEEEeccCCCCCCCCCcccccCCCCccCCCcChHHHHHHHHhhhcCeeeecCCCc
Confidence            589999999999999999999999999999999988765                      9999999999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267         59 VQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY  101 (103)
Q Consensus        59 ~~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~  101 (103)
                      +++|+|+++.+++|||+||||||++|+||||+||||||+|+++
T Consensus       201 ~~~~~dv~~~s~~PviaSHsn~ral~~h~RNl~De~l~aIa~~  243 (369)
T d1itua_         201 VATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVKQT  243 (369)
T ss_dssp             HHHHHHHHHHCSSCCEESSCCBTTTSCCTTSBCHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCceeecccchhhhhhhhcCCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999985
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure