Psyllid ID: psy11271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEIK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccEEEEEEccccccccccccEEEEEEcccEEEEEEccHHHHHHHHHcccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccEEEEEEEEcEEEEEEEEccHHHHHHHHHccccccEEEEcc
Coil and Loop (DISEMBL)
MPREIKEIKEFLLKARRKdaksvtikrnisknkdkkpdntkfkvRCSRFLYTLVITDNEKAEKlkqslppglqvkeik
Flexible Loop (DISEMBL)
MPREIKEIKEFLlkarrkdaksvtikrnisknkdkkpdntkfkvrcsRFLYTLVItdnekaeklkqslppglqvkeik
Low Complexity Region (SEG)
MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEIK
Disordered region (IsUnstruct)
****************************************KFKVRCSRFLYTLVITD*********************
Disordered Region (DISOPRED)
*PREIKEIKEFLLKARRKDA***************KPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQV**I*
Disordered Region (DISEMBL)
MPREIKEIKEFLLKAR********IKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEIK
Disordered Region (DISPRO)
MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEIK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
A2I469	78	60S ribosomal protein L38	N/A	N/A	0.897	0.897	0.820	2e-27
Q4GX87	70	60S ribosomal protein L38	N/A	N/A	0.897	1.0	0.794	4e-27
Q5MGL3	70	60S ribosomal protein L38	N/A	N/A	0.897	1.0	0.794	5e-27
Q4GX86	70	60S ribosomal protein L38	N/A	N/A	0.897	1.0	0.794	5e-27
Q6F450	70	60S ribosomal protein L38	N/A	N/A	0.897	1.0	0.794	6e-27
Q5UAP8	70	60S ribosomal protein L38	N/A	N/A	0.897	1.0	0.782	1e-26
Q962S5	70	60S ribosomal protein L38	N/A	N/A	0.897	1.0	0.782	7e-26
Q56FC8	76	60S ribosomal protein L38	N/A	N/A	0.897	0.921	0.769	8e-26
A7L6A2	70	60S ribosomal protein L38	N/A	N/A	0.897	1.0	0.730	4e-25
P63174	70	60S ribosomal protein L38	yes	N/A	0.897	1.0	0.743	3e-24

>sp|A2I469|RL38_MACHI 60S ribosomal protein L38 OS=Maconellicoccus hirsutus GN=RpL38 PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/78 (82%), Positives = 66/78 (84%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIKEIKEFL+KARRKDAKSV IK+N        P N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKEIKEFLIKARRKDAKSVKIKKN--------PTNVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKEIK
Sbjct: 53 AEKLKQSLPPGLQVKEIK 70

Maconellicoccus hirsutus (taxid: 177089)

>sp|Q4GX87|RL38_JULON 60S ribosomal protein L38 OS=Julodis onopordi GN=RpL38 PE=3 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 66/78 (84%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREI EIK+FLLKARRKDAKSV IK+N        PDN KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREITEIKDFLLKARRKDAKSVKIKKN--------PDNVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE++
Sbjct: 53 AEKLKQSLPPGLQVKEVR 70

Julodis onopordi (taxid: 261158)

>sp|Q5MGL3|RL38_LONON 60S ribosomal protein L38 OS=Lonomia obliqua GN=RpL38 PE=3 SV=1

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK+IK+FLLKARRKDAKSV IK+N        P+N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKDIKDFLLKARRKDAKSVEIKKN--------PENVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Lonomia obliqua (taxid: 304329)

>sp|Q4GX86|RL38_TIMBA 60S ribosomal protein L38 OS=Timarcha balearica GN=RpL38 PE=3 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 66/78 (84%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPRE+ EIKEFLL ARRKDAKSV IK+N        P+NTKFKVRCSRFLYTLVITD EK
Sbjct: 1  MPRELTEIKEFLLTARRKDAKSVKIKKN--------PENTKFKVRCSRFLYTLVITDREK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Timarcha balearica (taxid: 79517)

>sp|Q6F450|RL38_PLUXY 60S ribosomal protein L38 OS=Plutella xylostella GN=RpL38 PE=3 SV=1

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK+IK+FLLKARRKDAKSV IK+N        P+N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKDIKDFLLKARRKDAKSVKIKKN--------PENVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Plutella xylostella (taxid: 51655)

>sp|Q5UAP8|RL38_BOMMO 60S ribosomal protein L38 OS=Bombyx mori GN=RpL38 PE=3 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK+IK+FL+KARRKDAKSV IK+N        P+N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKDIKDFLIKARRKDAKSVKIKKN--------PENVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Bombyx mori (taxid: 7091)

>sp|Q962S5|RL38_SPOFR 60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 65/78 (83%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK+IK+FLLKARRKDAKSV IK+N          N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKDIKDFLLKARRKDAKSVKIKKN--------QQNVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Spodoptera frugiperda (taxid: 7108)

>sp|Q56FC8|RL38_LYSTE 60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 65/78 (83%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIKEIK+FL+ ARRKDAKSV IK+N         +N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKEIKDFLVTARRKDAKSVKIKKN--------AENVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Lysiphlebus testaceipes (taxid: 77504)

>sp|A7L6A2|RL38_ARTSF 60S ribosomal protein L38 OS=Artemia franciscana GN=RPL38 PE=3 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MP+++ EIK+FL+KARRKDAKS  IK+N        PDNTKFK+RCSRFLYTLVITD+EK
Sbjct: 1  MPKQLMEIKDFLIKARRKDAKSCKIKKN--------PDNTKFKLRCSRFLYTLVITDSEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLK+SLPPGLQVKE+K
Sbjct: 53 AEKLKKSLPPGLQVKELK 70

Artemia franciscana (taxid: 6661)

>sp|P63174|RL38_RAT 60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 64/78 (82%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPR+I+EIK+FLL ARRKDAKSV IK+N         DN KFKVRCSR+LYTLVITD EK
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKN--------KDNVKFKVRCSRYLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGL VKE+K
Sbjct: 53 AEKLKQSLPPGLAVKELK 70

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
389032529	70	ribosomal L38e protein family [Ctenoceph	0.897	1.0	0.820	2e-26
206558112	78	RecName: Full=60S ribosomal protein L38	0.897	0.897	0.820	8e-26
110765973	75	PREDICTED: 60S ribosomal protein L38 [Ap	0.897	0.933	0.807	1e-25
344190581	69	ribosomal protein L38 [Dipetalogaster ma	0.884	1.0	0.818	1e-25
122048955	70	RecName: Full=60S ribosomal protein L38	0.897	1.0	0.794	2e-25
357611939	102	60S ribosomal protein L38 [Danaus plexip	0.897	0.686	0.794	2e-25
74903302	70	RecName: Full=60S ribosomal protein L38	0.897	1.0	0.794	2e-25
122048954	70	RecName: Full=60S ribosomal protein L38	0.897	1.0	0.794	2e-25
193587113	83	PREDICTED: 60S ribosomal protein L38-lik	0.897	0.843	0.807	2e-25
74910327	70	RecName: Full=60S ribosomal protein L38	0.897	1.0	0.794	2e-25

>gi|389032529|gb|AFK82401.1| ribosomal L38e protein family [Ctenocephalides felis]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/78 (82%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIKEIK+FLLKARRKDAKSV IK+N        PDN KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKEIKDFLLKARRKDAKSVKIKKN--------PDNVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Source: Ctenocephalides felis

Species: Ctenocephalides felis

Genus: Ctenocephalides

Family: Pulicidae

Order: Siphonaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|206558112|sp|A2I469.1|RL38_MACHI RecName: Full=60S ribosomal protein L38 gi|121543947|gb|ABM55638.1| ribosomal protein L38-like protein [Maconellicoccus hirsutus]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/78 (82%), Positives = 66/78 (84%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIKEIKEFL+KARRKDAKSV IK+N        P N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKEIKEFLIKARRKDAKSVKIKKN--------PTNVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKEIK
Sbjct: 53 AEKLKQSLPPGLQVKEIK 70

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110765973|ref|XP_001120263.1| PREDICTED: 60S ribosomal protein L38 [Apis mellifera] gi|340716495|ref|XP_003396733.1| PREDICTED: 60S ribosomal protein L38-like [Bombus terrestris] gi|350404518|ref|XP_003487129.1| PREDICTED: 60S ribosomal protein L38-like [Bombus impatiens] gi|380027751|ref|XP_003697582.1| PREDICTED: 60S ribosomal protein L38-like [Apis florea]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 66/78 (84%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIKEIK+FLLKARRKDAKSV IK+N         DN KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKEIKDFLLKARRKDAKSVKIKKN--------ADNVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344190581|gb|AEM97965.1| ribosomal protein L38 [Dipetalogaster maximus]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 66/77 (85%), Gaps = 8/77 (10%)

Query: 2  PREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKA 61
          PREIKEIK+FLLKARRKDAKSV IK+N        PDN KFKVRCSRFLYTLVITD EKA
Sbjct: 1  PREIKEIKDFLLKARRKDAKSVKIKKN--------PDNVKFKVRCSRFLYTLVITDKEKA 52

Query: 62 EKLKQSLPPGLQVKEIK 78
          EKLKQSLPPGLQVKE+K
Sbjct: 53 EKLKQSLPPGLQVKEVK 69

Source: Dipetalogaster maximus

Species: Dipetalogaster maximus

Genus: Dipetalogaster

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|122048955|sp|Q4GX87.1|RL38_JULON RecName: Full=60S ribosomal protein L38 gi|70909899|emb|CAJ17436.1| ribosomal protein L38e [Julodis onopordi]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 66/78 (84%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREI EIK+FLLKARRKDAKSV IK+N        PDN KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREITEIKDFLLKARRKDAKSVKIKKN--------PDNVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE++
Sbjct: 53 AEKLKQSLPPGLQVKEVR 70

Source: Julodis onopordi

Species: Julodis onopordi

Genus: Julodis

Family: Buprestidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611939|gb|EHJ67727.1| 60S ribosomal protein L38 [Danaus plexippus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1   MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
           MPREIK+IK+FLLKARRKDAKSV IK+N        P+N KFKVRCSRFLYTLVITD EK
Sbjct: 33  MPREIKDIKDFLLKARRKDAKSVKIKKN--------PENVKFKVRCSRFLYTLVITDKEK 84

Query: 61  AEKLKQSLPPGLQVKEIK 78
           AEKLKQSLPPGLQVKE+K
Sbjct: 85  AEKLKQSLPPGLQVKEVK 102

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|74903302|sp|Q5MGL3.1|RL38_LONON RecName: Full=60S ribosomal protein L38 gi|56462208|gb|AAV91387.1| ribosomal protein L38e [Lonomia obliqua]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK+IK+FLLKARRKDAKSV IK+N        P+N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKDIKDFLLKARRKDAKSVEIKKN--------PENVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Source: Lonomia obliqua

Species: Lonomia obliqua

Genus: Lonomia

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|122048954|sp|Q4GX86.1|RL38_TIMBA RecName: Full=60S ribosomal protein L38 gi|70909901|emb|CAJ17437.1| ribosomal protein L38e [Timarcha balearica]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 66/78 (84%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPRE+ EIKEFLL ARRKDAKSV IK+N        P+NTKFKVRCSRFLYTLVITD EK
Sbjct: 1  MPRELTEIKEFLLTARRKDAKSVKIKKN--------PENTKFKVRCSRFLYTLVITDREK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Source: Timarcha balearica

Species: Timarcha balearica

Genus: Timarcha

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193587113|ref|XP_001951914.1| PREDICTED: 60S ribosomal protein L38-like [Acyrthosiphon pisum]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MP+EIKEIK+FLLKARRKDAKSV IK+NI        +N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPQEIKEIKDFLLKARRKDAKSVKIKKNI--------ENVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKEIK
Sbjct: 53 AEKLKQSLPPGLQVKEIK 70

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|74910327|sp|Q6F450.1|RL38_PLUXY RecName: Full=60S ribosomal protein L38 gi|49532898|dbj|BAD26684.1| Ribosomal protein L38 [Plutella xylostella] gi|268306456|gb|ACY95349.1| ribosomal protein L38 [Manduca sexta] gi|308512793|gb|ADO33050.1| ribosomal protein L38 [Biston betularia] gi|315115463|gb|ADT80704.1| ribosomal protein L38 [Euphydryas aurinia] gi|342356451|gb|AEL28884.1| ribosomal protein L38 [Heliconius melpomene cythera]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 67/78 (85%), Gaps = 8/78 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK+IK+FLLKARRKDAKSV IK+N        P+N KFKVRCSRFLYTLVITD EK
Sbjct: 1  MPREIKDIKDFLLKARRKDAKSVKIKKN--------PENVKFKVRCSRFLYTLVITDKEK 52

Query: 61 AEKLKQSLPPGLQVKEIK 78
          AEKLKQSLPPGLQVKE+K
Sbjct: 53 AEKLKQSLPPGLQVKEVK 70

Source: Plutella xylostella

Species: Plutella xylostella

Genus: Plutella

Family: Plutellidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
UNIPROTKB|E1BU66	70	RPL38 "Uncharacterized protein	0.897	1.0	0.769	5.3e-24
UNIPROTKB|Q32PB9	70	RPL38 "60S ribosomal protein L	0.897	1.0	0.769	5.3e-24
UNIPROTKB|P63173	70	RPL38 "60S ribosomal protein L	0.897	1.0	0.769	5.3e-24
UNIPROTKB|F2Z568	70	RPL38 "Uncharacterized protein	0.897	1.0	0.769	5.3e-24
RGD|1305573	70	Rpl38 "ribosomal protein L38"	0.897	1.0	0.769	5.3e-24
MGI|MGI:1914921	70	Rpl38 "ribosomal protein L38"	0.897	1.0	0.756	1.1e-23
FB|FBgn0040007	70	RpL38 "Ribosomal protein L38"	0.897	1.0	0.692	1.4e-23
UNIPROTKB|Q6XIM7	70	RpL38 "60S ribosomal protein L	0.897	1.0	0.692	1.4e-23
RGD|1561636	70	RGD1561636 "similar to 60S rib	0.897	1.0	0.756	1.4e-23
WB|WBGene00004452	70	rpl-38 [Caenorhabditis elegans	0.897	1.0	0.692	3.8e-23

UNIPROTKB|E1BU66 RPL38 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 60/78 (76%), Positives = 65/78 (83%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPR+I+EIK+FLL ARRKDAKSV IK    KNKD    N KFKVRCSR+LYTLVITD EK
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIK----KNKD----NVKFKVRCSRYLYTLVITDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             AEKLKQSLPPGL VKE+K
Sbjct:    53 AEKLKQSLPPGLAVKELK 70

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0001503 "ossification" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0042474 "middle ear morphogenesis" evidence=IEA

UNIPROTKB|Q32PB9 RPL38 "60S ribosomal protein L38" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 60/78 (76%), Positives = 65/78 (83%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPR+I+EIK+FLL ARRKDAKSV IK    KNKD    N KFKVRCSR+LYTLVITD EK
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIK----KNKD----NVKFKVRCSRYLYTLVITDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             AEKLKQSLPPGL VKE+K
Sbjct:    53 AEKLKQSLPPGLAVKELK 70

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P63173 RPL38 "60S ribosomal protein L38" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 60/78 (76%), Positives = 65/78 (83%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPR+I+EIK+FLL ARRKDAKSV IK    KNKD    N KFKVRCSR+LYTLVITD EK
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIK----KNKD----NVKFKVRCSRYLYTLVITDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             AEKLKQSLPPGL VKE+K
Sbjct:    53 AEKLKQSLPPGLAVKELK 70

GO:0001503 "ossification" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0042474 "middle ear morphogenesis" evidence=IEA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z568 RPL38 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 60/78 (76%), Positives = 65/78 (83%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPR+I+EIK+FLL ARRKDAKSV IK    KNKD    N KFKVRCSR+LYTLVITD EK
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIK----KNKD----NVKFKVRCSRYLYTLVITDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             AEKLKQSLPPGL VKE+K
Sbjct:    53 AEKLKQSLPPGLAVKELK 70

GO:0042474 "middle ear morphogenesis" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0001503 "ossification" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1305573 Rpl38 "ribosomal protein L38" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 60/78 (76%), Positives = 65/78 (83%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPR+I+EIK+FLL ARRKDAKSV IK    KNKD    N KFKVRCSR+LYTLVITD EK
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIK----KNKD----NVKFKVRCSRYLYTLVITDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             AEKLKQSLPPGL VKE+K
Sbjct:    53 AEKLKQSLPPGLAVKELK 70

GO:0001501 "skeletal system development" evidence=ISO

GO:0001503 "ossification" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0033291 "eukaryotic 80S initiation complex" evidence=ISO

GO:0034463 "90S preribosome assembly" evidence=ISO

GO:0042474 "middle ear morphogenesis" evidence=ISO

GO:0048318 "axial mesoderm development" evidence=ISO

MGI|MGI:1914921 Rpl38 "ribosomal protein L38" [Mus musculus (taxid:10090)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 59/78 (75%), Positives = 65/78 (83%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPR+I+EIK+FLL ARRKDAKSV IK    KNKD    N KFKVRCSR+LYTLVITD EK
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIK----KNKD----NVKFKVRCSRYLYTLVITDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             AEKLKQSLPPGL VK++K
Sbjct:    53 AEKLKQSLPPGLAVKDLK 70

GO:0001501 "skeletal system development" evidence=IMP;TAS

GO:0001503 "ossification" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0033291 "eukaryotic 80S initiation complex" evidence=IDA

GO:0034463 "90S preribosome assembly" evidence=IDA

GO:0042474 "middle ear morphogenesis" evidence=IMP

GO:0048318 "axial mesoderm development" evidence=IMP

FB|FBgn0040007 RpL38 "Ribosomal protein L38" [Drosophila melanogaster (taxid:7227)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 54/78 (69%), Positives = 64/78 (82%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPREIKE+K+FL KARR DA++V IK+N        P NTKFK+RCSRFLYTLV+ D EK
Sbjct:     1 MPREIKEVKDFLNKARRSDARAVKIKKN--------PTNTKFKIRCSRFLYTLVVQDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             A+K+KQSLPPGLQVKE+K
Sbjct:    53 ADKIKQSLPPGLQVKEVK 70

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=IDA

UNIPROTKB|Q6XIM7 RpL38 "60S ribosomal protein L38" [Drosophila yakuba (taxid:7245)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 54/78 (69%), Positives = 64/78 (82%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPREIKE+K+FL KARR DA++V IK+N        P NTKFK+RCSRFLYTLV+ D EK
Sbjct:     1 MPREIKEVKDFLNKARRSDARAVKIKKN--------PTNTKFKIRCSRFLYTLVVQDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             A+K+KQSLPPGLQVKE+K
Sbjct:    53 ADKIKQSLPPGLQVKEVK 70

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1561636 RGD1561636 "similar to 60S ribosomal protein L38" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/78 (75%), Positives = 64/78 (82%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MPR+I+EIK+FLL ARRKDAKSV IK    KNKD    N KFKVRCSR+LYTLVITD EK
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIK----KNKD----NVKFKVRCSRYLYTLVITDKEK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
              EKLKQSLPPGL VKE+K
Sbjct:    53 VEKLKQSLPPGLAVKELK 70

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

WB|WBGene00004452 rpl-38 [Caenorhabditis elegans (taxid:6239)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/78 (69%), Positives = 65/78 (83%)

Query:     1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
             MP+EIKEIK+FL+KARRKDAKSV IK+N         +NTKFKVRC+ +LYTLV+ D +K
Sbjct:     1 MPKEIKEIKDFLVKARRKDAKSVKIKKN--------SNNTKFKVRCASYLYTLVVADKDK 52

Query:    61 AEKLKQSLPPGLQVKEIK 78
             AEKLKQSLPPG+QVKE+K
Sbjct:    53 AEKLKQSLPPGIQVKELK 70

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6N9N3	RL38_ORNPR	No assigned EC number	0.6962	0.8974	0.9859	N/A	N/A
Q6XIM7	RL38_DROYA	No assigned EC number	0.6923	0.8974	1.0	N/A	N/A
O22860	RL38_ARATH	No assigned EC number	0.6233	0.8846	1.0	yes	N/A
Q32PB9	RL38_BOVIN	No assigned EC number	0.7435	0.8974	1.0	yes	N/A
Q09900	RL38B_SCHPO	No assigned EC number	0.5324	0.8974	0.9459	no	N/A
Q6F450	RL38_PLUXY	No assigned EC number	0.7948	0.8974	1.0	N/A	N/A
O17570	RL38_CAEEL	No assigned EC number	0.6923	0.8974	1.0	yes	N/A
P49167	RL38_YEAST	No assigned EC number	0.5641	0.9871	0.9871	yes	N/A
O61570	RL38_OSTOS	No assigned EC number	0.6282	0.8974	1.0	N/A	N/A
P63174	RL38_RAT	No assigned EC number	0.7435	0.8974	1.0	yes	N/A
Q5MGL3	RL38_LONON	No assigned EC number	0.7948	0.8974	1.0	N/A	N/A
P63173	RL38_HUMAN	No assigned EC number	0.7435	0.8974	1.0	yes	N/A
A2I469	RL38_MACHI	No assigned EC number	0.8205	0.8974	0.8974	N/A	N/A
Q5UAP8	RL38_BOMMO	No assigned EC number	0.7820	0.8974	1.0	N/A	N/A
Q9USR7	RL38A_SCHPO	No assigned EC number	0.5714	0.8974	0.9459	yes	N/A
Q9JJI8	RL38_MOUSE	No assigned EC number	0.7307	0.8974	1.0	yes	N/A
Q95V84	RL38_BRABE	No assigned EC number	0.7179	0.8974	1.0	N/A	N/A
Q1HRT4	RL38_AEDAE	No assigned EC number	0.6923	0.8974	1.0	N/A	N/A
Q56FC8	RL38_LYSTE	No assigned EC number	0.7692	0.8974	0.9210	N/A	N/A
A7L6A2	RL38_ARTSF	No assigned EC number	0.7307	0.8974	1.0	N/A	N/A
Q9C2B9	RL38_NEUCR	No assigned EC number	0.5064	0.9102	0.8875	N/A	N/A
Q962S5	RL38_SPOFR	No assigned EC number	0.7820	0.8974	1.0	N/A	N/A
Q7Q0U1	RL38_ANOGA	No assigned EC number	0.6923	0.8974	1.0	yes	N/A
Q4UGN5	RL38_THEAN	No assigned EC number	0.4285	0.9487	0.9367	yes	N/A
Q55GJ7	RL38_DICDI	No assigned EC number	0.5324	0.8974	0.9333	yes	N/A
Q4GX86	RL38_TIMBA	No assigned EC number	0.7948	0.8974	1.0	N/A	N/A
Q4GX87	RL38_JULON	No assigned EC number	0.7948	0.8974	1.0	N/A	N/A
Q4N921	RL38_THEPA	No assigned EC number	0.4285	0.9487	0.9367	yes	N/A
P46291	RL38_SOLLC	No assigned EC number	0.5974	0.8846	1.0	N/A	N/A
Q4PMD1	RL38_IXOSC	No assigned EC number	0.7215	0.8974	0.9859	N/A	N/A
Q9W5N2	RL38_DROME	No assigned EC number	0.6923	0.8974	1.0	yes	N/A
Q09JT4	RL38_ARGMO	No assigned EC number	0.6962	0.8974	0.9859	N/A	N/A
Q8HXB9	RL38_MACFA	No assigned EC number	0.75	0.8717	0.9714	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	78
pfam01781	69	pfam01781, Ribosomal_L38e, Ribosomal L38e protein	1e-24
PTZ00181	82	PTZ00181, PTZ00181, 60S ribosomal protein L38; Pro	2e-13

>gnl|CDD|201970 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family

 Score = 86.5 bits (215), Expect = 1e-24
 Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 7/76 (9%)

Query: 2  PREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKA 61
          P+EI +IK+FL  ARRKDAKSV IK+N       K   TKFKVRCSR+LYTLV+ D +KA
Sbjct: 1  PKEITDIKDFLEIARRKDAKSVKIKKN-------KKKITKFKVRCSRYLYTLVVADKKKA 53

Query: 62 EKLKQSLPPGLQVKEI 77
          EKLKQSLPP L+V E+
Sbjct: 54 EKLKQSLPPTLKVIEV 69

Length = 69

>gnl|CDD|140208 PTZ00181, PTZ00181, 60S ribosomal protein L38; Provisional

 Score = 59.0 bits (142), Expect = 2e-13
 Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 8/73 (10%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK +KEFL    RKDA+ V +K N        P  TKFKVRCSR+LYTLV+ D +K
Sbjct: 1  MPREIKTLKEFLAICSRKDARCVKVKHN--------PSATKFKVRCSRYLYTLVVADKKK 52

Query: 61 AEKLKQSLPPGLQ 73
          A+K+++S+ P ++
Sbjct: 53 ADKIERSIHPSVK 65

Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG3499|consensus	69		100.0
PTZ00181	82	60S ribosomal protein L38; Provisional	100.0
PF01781	69	Ribosomal_L38e: Ribosomal L38e protein family; Int	100.0

>KOG3499|consensus

Probab=100.00  E-value=2.5e-45  Score=233.28  Aligned_cols=69  Identities=78%  Similarity=1.191  Sum_probs=67.8

Q ss_pred             CchhhHHHHHHHHHhhhCCCceeEEeccccCCCCCCCCceeEEEeecCcEEEEEecChHHHHHhHhcCCCCCeeeec
Q psy11271          1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEI   77 (78)
Q Consensus         1 MPkeI~dIK~Fl~~arrkDAksv~IKk~~~~~~~~~~~~tKFKvRcsryLYTLvv~D~eKAeKl~qSLPP~l~v~~~   77 (78)
                      ||+||+|||+||++|||+||+||+||+|        +++||||||||||||||||.|++|||||+|||||||+|+|+
T Consensus         1 Mpr~i~eiK~FL~~arR~Da~s~kiKkn--------~~~~KFKvRcsryLYTLvv~D~~KAeKlkQSLPP~l~V~el   69 (69)
T KOG3499|consen    1 MPRQITEIKDFLLTARRKDAKSVKIKKN--------KNNVKFKVRCSRYLYTLVVADAEKAEKLKQSLPPGLTVKEL   69 (69)
T ss_pred             CcchHHHHHHHHHHHHhcccceeEEEec--------CCceeEEEEeeeeeeeeeeccHHHHHHHHhcCCCCceeecC
Confidence            9999999999999999999999999999        88999999999999999999999999999999999999985

>PTZ00181 60S ribosomal protein L38; Provisional

Probab=100.00  E-value=1.3e-43  Score=232.24  Aligned_cols=69  Identities=55%  Similarity=0.945  Sum_probs=67.9

Q ss_pred             CchhhHHHHHHHHHhhhCCCceeEEeccccCCCCCCCCceeEEEeecCcEEEEEecChHHHHHhHhcCCCCCeeeec
Q psy11271          1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEI   77 (78)
Q Consensus         1 MPkeI~dIK~Fl~~arrkDAksv~IKk~~~~~~~~~~~~tKFKvRcsryLYTLvv~D~eKAeKl~qSLPP~l~v~~~   77 (78)
                      ||+||+|||+||++|||+||+||+||+|        .++||||||||||||||+|+|.+||+||+|||||||+|+++
T Consensus         1 MPkeI~dIK~FL~~arrkDAksvkIKkn--------~~~tKFKvRcsrYLYTLvv~D~~KA~KlkqSLPp~l~v~~v   69 (82)
T PTZ00181          1 MPREIKTLKEFLAICSRKDARCVKVKHN--------PSATKFKVRCSRYLYTLVVADKKKADKIERSIHPSVKKITV   69 (82)
T ss_pred             CchhHHHHHHHHHHhhccCceEEEeecC--------CcceEEEEEecceEEEEEeCCHHHHHHHHhcCCCCceEEEe
Confidence            9999999999999999999999999999        89999999999999999999999999999999999999986

>PF01781 Ribosomal_L38e: Ribosomal L38e protein family; InterPro: IPR002675 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=9.8e-43  Score=221.82  Aligned_cols=68  Identities=79%  Similarity=1.195  Sum_probs=62.2

Q ss_pred             chhhHHHHHHHHHhhhCCCceeEEeccccCCCCCCCCc-eeEEEeecCcEEEEEecChHHHHHhHhcCCCCCeeeec
Q psy11271          2 PREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDN-TKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEI   77 (78)
Q Consensus         2 PkeI~dIK~Fl~~arrkDAksv~IKk~~~~~~~~~~~~-tKFKvRcsryLYTLvv~D~eKAeKl~qSLPP~l~v~~~   77 (78)
                      |+||+|||+||++|||+||+||+||+|        +++ ||||||||||||||+|+|+||||+|+|||||||.+++|
T Consensus         1 Pkqi~~iK~FL~~arrkDAksv~iKk~--------~~~~tKFKvRcsryLYTLvv~d~~KAeklkqSLPp~l~v~~i   69 (69)
T PF01781_consen    1 PKQIKDIKDFLETARRKDAKSVKIKKN--------KDNGTKFKVRCSRYLYTLVVKDKEKAEKLKQSLPPGLKVKEI   69 (69)
T ss_dssp             -THHHHHHHHHHHHCSS-EEEEEEECE--------SSSTEEEEEECSS-EEEESS-SHHHHHHHHHSSSSSSEEEEE
T ss_pred             CcchhhHHHHHHHHhhCCCceEEEEec--------CCCeeEEEEEecceEEEEEEcCHHHHHHHHhhCCCCCeEeeC
Confidence            899999999999999999999999999        666 99999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L38e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_n 3IZR_n 4A1D_P 4A19_P 4A18_P 4A1B_P.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
3izr_n	69	Localization Of The Large Subunit Ribosomal Protein		3e-20
3zf7_p	82	High-resolution Cryo-electron Microscopy Structure		1e-14
3izs_n	78	Localization Of The Large Subunit Ribosomal Protein		2e-14

>pdb|3IZR|NN Chain n, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 69

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 8/77 (10%)
Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MP++I EIK+FLL ARRKDA+SV IKR          D  KFKVRCS++LYTL + D +K
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVRIKRT--------KDAVKFKVRCSKYLYTLCVFDADK 52
Query: 61 AEKLKQSLPPGLQVKEI 77
          A KLKQSLPPGL V+E+
Sbjct: 53 ANKLKQSLPPGLTVQEV 69

>pdb|3ZF7|PP Chain p, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 82

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 8/73 (10%)
Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MPREIK +KEFL    RKDA+ V +K N        P  TKFKVRCSR LYTLV+ D +K
Sbjct: 1  MPREIKNLKEFLAICSRKDARCVKVKHN--------PKVTKFKVRCSRHLYTLVMADKKK 52
Query: 61 AEKLKQSLPPGLQ 73
          A+K+++S+ P ++
Sbjct: 53 ADKIERSIHPSVK 65

>pdb|3IZS|NN Chain n, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 78

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKP-DNTKFKVRCSRFLYTLVITDNE 59
          M REI +IK+FL   RR D K+ T+K N   NK  KP   TKFKVR S  LYTLVI D  
Sbjct: 1  MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAG 60
Query: 60 KAEKLKQSLPPGLQVKEI 77
          KA+KL QSLPP L+V  +
Sbjct: 61 KAKKLIQSLPPTLKVNRL 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	2e-28
3izc_n	78	60S ribosomal protein RPL38 (L38E); eukaryotic rib	4e-27
4a18_P	89	RPL38, ribosomal protein L22; ribosome, eukaryotic	1e-11

>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P Length = 89

 Score = 54.1 bits (129), Expect = 1e-11
 Identities = 23/78 (29%), Positives = 36/78 (46%)

Query: 1  MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEK 60
          MP+EI +IK+F+   +       T               TKFK+R  ++LYT    D + 
Sbjct: 1  MPKEITDIKKFMKLWQNNKDTPATAGAKKVVYVKTNKRITKFKLRGKKYLYTFKTADPKI 60

Query: 61 AEKLKQSLPPGLQVKEIK 78
          A+ +K ++P      EIK
Sbjct: 61 AKGIKDAIPATYSKIEIK 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
3izc_n	78	60S ribosomal protein RPL38 (L38E); eukaryotic rib	100.0
3iz5_n	69	60S ribosomal protein L38 (L38E); eukaryotic ribos	100.0
4a18_P	89	RPL38, ribosomal protein L22; ribosome, eukaryotic	100.0

>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P

Probab=100.00  E-value=2.6e-42  Score=227.86  Aligned_cols=70  Identities=34%  Similarity=0.554  Sum_probs=60.7

Q ss_pred             CchhhHHHHHHHHHhhhCCCcee--------EEeccccCCCCCCCCceeEEEeecCcEEEEEecChHHHHHhHhcCCCCC
Q psy11271          1 MPREIKEIKEFLLKARRKDAKSV--------TIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGL   72 (78)
Q Consensus         1 MPkeI~dIK~Fl~~arrkDAksv--------~IKk~~~~~~~~~~~~tKFKvRcsryLYTLvv~D~eKAeKl~qSLPP~l   72 (78)
                      ||+||+|||+||++|||+||+||        +||+|        .++||||||||||||||+|+|+||||+|+|||||||
T Consensus         1 MPkqI~dIK~FL~~arrkDaksv~~~kkk~~~IKkn--------~~~tKFKvRcsryLYTLvv~D~~KAeKlkqSLPp~l   72 (89)
T 4a18_P            1 MPKEITDIKKFMKLWQNNKDTPATAGAKKVVYVKTN--------KRITKFKLRGKKYLYTFKTADPKIAKGIKDAIPATY   72 (89)
T ss_dssp             -CEEESSHHHHHHHHHC----------CCEEEEEEC--------SSCEEEEEECSSCEEEEEECSHHHHHHHHHTCCSSS
T ss_pred             CChhHHHHHHHHHHHHccCCceeeeccccceeEEec--------CCceEEEEEecCceEEEEeCCHHHHHHHHhcCCCCc
Confidence            99999999999999999999999        89998        889999999999999999999999999999999999


Q ss_pred             eeeecC
Q psy11271         73 QVKEIK   78 (78)
Q Consensus        73 ~v~~~k   78 (78)
                      .+++|+
T Consensus        73 ~v~~i~   78 (89)
T 4a18_P           73 SKIEIK   78 (89)
T ss_dssp             EEEEC-
T ss_pred             eEEEcc
Confidence            999984

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00