Psyllid ID: psy11297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MVPLVRMKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEccccccccccccccccccccccccccccEEEEcccccccccEEEEEEEcccccccEEEccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccccccccccccccccccccccccEEEccccccEEEEcccccccccccccccccccccccccccEEEEEcccccEEEEEEEEEEEEccccEEEEEccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
mvplvrmkrmgclSASVvqssqaspnlrleespclshpcqngatcqdeedglfeclcspeftgylchtrappklydtpafngssHIVMKTLKAYNKLSIEIEfktnkndgiLLYNqqnldgtgdfVSLAIVN
Flexible Loop (DISEMBL)
MVPLVRMKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNqqnldgtgdFVSLAIVN
Low Complexity Region (SEG)
MVPLVRMKRMGCLsasvvqssqasPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN
Disordered region (IsUnstruct)
******************************************ATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI**
Disordered Region (DISOPRED)
MVPLVRMKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN
Disordered Region (DISEMBL)
MVPLVRMKRMGCL****************EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN
Disordered Region (DISPRO)
MVPLVRMKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVPLVRMKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
P31696	2081	Agrin OS=Gallus gallus GN	yes	N/A	0.704	0.044	0.425	3e-14
P25304	1959	Agrin OS=Rattus norvegicu	yes	N/A	0.787	0.053	0.372	2e-13
O00468	2067	Agrin OS=Homo sapiens GN=	yes	N/A	0.810	0.051	0.35	5e-12
A2ASQ1	1950	Agrin OS=Mus musculus GN=	yes	N/A	0.787	0.053	0.363	9e-12
Q90404	1328	Agrin (Fragment) OS=Diplo	N/A	N/A	0.810	0.080	0.322	2e-08
Q05793	3707	Basement membrane-specifi	no	N/A	0.75	0.026	0.275	2e-07
Q63HQ2	1017	Pikachurin OS=Homo sapien	no	N/A	0.765	0.099	0.339	4e-07
P98160	4391	Basement membrane-specifi	no	N/A	0.75	0.022	0.273	2e-06
Q9NYQ7	3312	Cadherin EGF LAG seven-pa	no	N/A	0.734	0.029	0.308	2e-06
A3KN33	1018	Pikachurin OS=Bos taurus	no	N/A	0.772	0.100	0.317	3e-06

>sp|P31696|AGRIN_CHICK Agrin OS=Gallus gallus GN=AGRN PE=1 SV=3

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 8/101 (7%)

Query: 33   PCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTL 91
            PC SHPC +G TC+D  DG  F C C     G +C     P  Y  P+F G S++  K +
Sbjct: 1350 PCDSHPCLHGGTCED--DGREFTCRCPAGKGGAVCEK---PIRYFIPSFGGKSYLAFKMM 1404

Query: 92   KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            KAY+ + I +EF+  +  G+LLYN QN     DF+SLA+V 
Sbjct: 1405 KAYHTVRIAMEFRATELSGLLLYNGQNRG--KDFISLALVG 1443

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.
Gallus gallus (taxid: 9031)

>sp|P25304|AGRIN_RAT Agrin OS=Rattus norvegicus GN=Agrn PE=1 SV=2

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)

Query: 24   SPNLRLEESPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNG 82
            +P  +     C S PC +G TCQD++ G  F C C+    G +C    PP +   PAF G
Sbjct: 1214 TPGHQQPSKSCDSQPCLHGGTCQDQDSGKGFTCSCTAGRGGSVCEKVQPPSM---PAFKG 1270

Query: 83   SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             S +   TL+AY+ L + +EF+  + +G+LLYN  N  G  DF++LA+++
Sbjct: 1271 HSFLAFPTLRAYHTLRLALEFRALETEGLLLYN-GNARGK-DFLALALLD 1318

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that directly binds LRP4 in this complex and induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Rattus norvegicus (taxid: 10116)

>sp|O00468|AGRIN_HUMAN Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 13/120 (10%)

Query: 21   SQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP-----PKLY 75
             +  P    E+SPC  +PC   A C+   +G  +C C     G  C T +      P L 
Sbjct: 1579 GRVGPTCADEKSPCQPNPCHGAAPCRVLPEGGAQCECPLGREGTFCQTASGQDGSGPFLA 1638

Query: 76   DTPAFNGSSHIVMKTLKAY-----NKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI 130
            D   FNG SH+ ++ L  +      K+++E+ F      G+LLYN Q  DG GDFVSLA+
Sbjct: 1639 D---FNGFSHLELRGLHTFARDLGEKMALEVVFLARGPSGLLLYNGQKTDGKGDFVSLAL 1695

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that directly binds LRP4 in this complex and induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Homo sapiens (taxid: 9606)

>sp|A2ASQ1|AGRIN_MOUSE Agrin OS=Mus musculus GN=Agrn PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 6/110 (5%)

Query: 24   SPNLRLEESPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNG 82
            +P  +     C S PC +G TCQD + G  F C C+    G +C      +L   PAF G
Sbjct: 1205 TPGPQRPPKSCDSQPCLHGGTCQDLDSGKGFSCSCTAGRAGTVCEKV---QLPSVPAFKG 1261

Query: 83   SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             S +   TL+AY+ L + +EF+  + +G+LLYN  N  G  DF++LA+++
Sbjct: 1262 HSFLAFPTLRAYHTLRLALEFRALETEGLLLYN-GNARGK-DFLALALLD 1309

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that directly binds LRP4 in this complex and induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Mus musculus (taxid: 10090)

>sp|Q90404|AGRIN_DIPOM Agrin (Fragment) OS=Diplobatis ommata GN=AGRN PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 11/118 (9%)

Query: 23  ASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYD-----T 77
           + P    + +PC  +PC   A C    +G  +C C     G LC  R      D      
Sbjct: 858 SGPTCADKHNPCDPNPCHQSANCMVLPEGGSKCECPMGREGELCE-RVSEAEQDQGKAFI 916

Query: 78  PAFNGSSHIVMKTLKAY-----NKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI 130
           P FNG S++ M  +  +      KLS+E+ F     +G++ YN Q  DG GDFVSL +
Sbjct: 917 PEFNGLSYLEMNGIHTFVSDLLQKLSMEVIFLAKDPNGMIFYNGQKTDGRGDFVSLNL 974

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Discopyge ommata (taxid: 7785)

>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 39/138 (28%)

Query: 34   CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP----PKLY-------------- 75
            C   PCQNG  CQD E   + C+C   FT    + R P    P L+              
Sbjct: 3166 CQDRPCQNGGQCQDSESSSYTCVCPAGFTAAAVNIRKPCTATPSLWADATCVNRPDGRGY 3225

Query: 76   -------------------DTPAFNGS-SHIVMKTL-KAYNKLSIEIEFKTNKNDGILLY 114
                                TP+ +G+ S++ +  L   +++L +++EFK  + +GILL+
Sbjct: 3226 TCRCHLGRSGVRCEEGVTVTTPSMSGAGSYLALPALTNTHHELRLDVEFKPLEPNGILLF 3285

Query: 115  NQQNLDGTGDFVSLAIVN 132
            +        DFVSLA+V 
Sbjct: 3286 SGGKSGPVEDFVSLAMVG 3303

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Mus musculus (taxid: 10090)

>sp|Q63HQ2|EGFLA_HUMAN Pikachurin OS=Homo sapiens GN=EGFLAM PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 28  RLEESPCLSHPCQNGATC-QDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHI 86
           RL + PC    C   + C  D   G   C C+    G  C       +   P F G S++
Sbjct: 341 RLFDMPCDETLCSADSFCVNDYTWGGSRCQCTLGKGGESCSEDI---VIQYPQFFGHSYV 397

Query: 87  VMKTLK-AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             + LK +Y    I +EF+    DG+LLY  +N  G GDF+SLAI+
Sbjct: 398 TFEPLKNSYQAFQITLEFRAEAEDGLLLYCGENEHGRGDFMSLAII 443

Involved in both the retinal photoreceptor ribbon synapse formation and physiological functions of visual perception. Necessary for proper bipolar dendritic tip apposition to the photoreceptor ribbon synapse. Promotes matrix assembly and cell adhesiveness.

Homo sapiens (taxid: 9606)

>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 40/139 (28%)

Query: 34   CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC-HTRA---PPK---------------- 73
            C   PCQNG  C D E   + C+C   FTG  C H++A    P+                
Sbjct: 3848 CRDRPCQNGGQCHDSESSSYVCVCPAGFTGSRCEHSQALHCHPEACGPDATCVNRPDGRG 3907

Query: 74   ------------------LYDTPAFNGS-SHIVMKTL-KAYNKLSIEIEFKTNKNDGILL 113
                                 TP+ +G+ S++ +  L   +++L +++EFK    DG+LL
Sbjct: 3908 YTCRCHLGRSGLRCEEGVTVTTPSLSGAGSYLALPALTNTHHELRLDVEFKPLAPDGVLL 3967

Query: 114  YNQQNLDGTGDFVSLAIVN 132
            ++        DFVSLA+V 
Sbjct: 3968 FSGGKSGPVEDFVSLAMVG 3986

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Homo sapiens (taxid: 9606)

>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens GN=CELSR3 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 27   LRLEESPCLSHPCQNGATCQDEEDGLFECLCSP--EFTGYLCHTRAPPKLYDTPAFNGSS 84
            L  E   C+   C+NG TC D  +G F C C     F G  C   A        +F  SS
Sbjct: 1472 LDTEAGRCVPGVCRNGGTCTDAPNGGFRCQCPAGGAFEGPRCEVAA-------RSFPPSS 1524

Query: 85   HIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             ++ + L+    L++ + F T +  G+L YN + L+   DF++L +V
Sbjct: 1525 FVMFRGLRQRFHLTLSLSFATVQQSGLLFYNGR-LNEKHDFLALELV 1570

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|A3KN33|EGFLA_BOVIN Pikachurin OS=Bos taurus GN=EGFLAM PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 28  RLEESPCLSHPCQNGATC-QDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHI 86
           RL ++ C    C   + C  D   G   C C+    G  C       +   P F G S++
Sbjct: 350 RLFDTSCDETVCSADSFCVSDYTWGGSRCHCNLGKGGESCSEDI---VIQYPQFFGHSYV 406

Query: 87  VMKTLK-AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             + LK +Y    I +EF+    DG+LLY  +N  G GDF+SLA++ 
Sbjct: 407 TFEPLKNSYQAFQITLEFRAEAEDGLLLYCGENEHGRGDFMSLAVIR 453

Involved in both the retinal photoreceptor ribbon synapse formation and physiological functions of visual perception. Necessary for proper bipolar dendritic tip apposition to the photoreceptor ribbon synapse. Promotes matrix assembly and cell adhesiveness.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
189233617	2027	PREDICTED: similar to agrin [Tribolium c	0.727	0.047	0.550	1e-27
270014663	1796	hypothetical protein TcasGA2_TC004709 [T	0.886	0.065	0.550	2e-27
322800551	948	hypothetical protein SINV_11086 [Solenop	0.75	0.104	0.533	7e-25
340723263	2243	PREDICTED: agrin-like [Bombus terrestris	0.719	0.042	0.525	7e-24
350425393	2243	PREDICTED: agrin-like [Bombus impatiens]	0.719	0.042	0.525	8e-24
332020061	713	Agrin [Acromyrmex echinatior]	0.886	0.164	0.475	1e-23
383850257	1852	PREDICTED: agrin-like [Megachile rotunda	0.734	0.052	0.525	1e-23
307179324	1668	Agrin [Camponotus floridanus]	0.75	0.059	0.524	2e-23
357602540	2033	hypothetical protein KGM_16605 [Danaus p	0.780	0.050	0.542	2e-22
380027342	1784	PREDICTED: agrin-like [Apis florea]	0.742	0.054	0.505	1e-21

>gi|189233617|ref|XP_001811978.1| PREDICTED: similar to agrin [Tribolium castaneum]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 79/118 (66%)

Query: 15   ASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
            +S  Q   A PN   E   C S PC +G+TC D     F C+C   FTG LC T    K 
Sbjct: 1247 SSDRQECIADPNPTDEYRACSSSPCHHGSTCVDLPAATFTCVCETNFTGSLCETEVIHKQ 1306

Query: 75   YDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            Y+TPAF+G S++ +K LKAY+KLSIE+EFKT+ +DG+LLYNQQ  DG GDFVSLAIVN
Sbjct: 1307 YNTPAFHGRSYVKLKPLKAYHKLSIEVEFKTHSHDGLLLYNQQKPDGLGDFVSLAIVN 1364

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014663|gb|EFA11111.1| hypothetical protein TcasGA2_TC004709 [Tribolium castaneum]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 79/118 (66%)

Query: 15   ASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
            +S  Q   A PN   E   C S PC +G+TC D     F C+C   FTG LC T    K 
Sbjct: 1014 SSDRQECIADPNPTDEYRACSSSPCHHGSTCVDLPAATFTCVCETNFTGSLCETEVIHKQ 1073

Query: 75   YDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            Y+TPAF+G S++ +K LKAY+KLSIE+EFKT+ +DG+LLYNQQ  DG GDFVSLAIVN
Sbjct: 1074 YNTPAFHGRSYVKLKPLKAYHKLSIEVEFKTHSHDGLLLYNQQKPDGLGDFVSLAIVN 1131

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800551|gb|EFZ21543.1| hypothetical protein SINV_11086 [Solenopsis invicta]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 71/103 (68%)

Query: 30  EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK 89
           E   CLS+PC   +TC D     F C+C P +TG LC      + Y+ P+F+G S++ MK
Sbjct: 131 EFRACLSYPCHMTSTCIDLPSATFVCICRPNYTGLLCDVEIKKRDYEIPSFDGKSYVRMK 190

Query: 90  TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            LKAY+K SIE+EFKT  ++GI+LYNQQ  DGTGDFVSLAIV+
Sbjct: 191 RLKAYHKFSIEVEFKTYADNGIILYNQQKNDGTGDFVSLAIVD 233

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723263|ref|XP_003400011.1| PREDICTED: agrin-like [Bombus terrestris]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 69/99 (69%)

Query: 34   CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKA 93
            CLS+PC   +TC D     F C+C P +TG LC      + Y+ P+F+G S++ M  LKA
Sbjct: 1470 CLSYPCHATSTCIDLPSATFVCICRPNYTGLLCDEEINKRDYEVPSFDGKSYVRMNRLKA 1529

Query: 94   YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            Y+K S+E+EFKT  ++GI+LYNQQ  DGTGDFVSLAIV+
Sbjct: 1530 YHKFSVEVEFKTYADNGIILYNQQKSDGTGDFVSLAIVD 1568

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425393|ref|XP_003494108.1| PREDICTED: agrin-like [Bombus impatiens]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 69/99 (69%)

Query: 34   CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKA 93
            CLS+PC   +TC D     F C+C P +TG LC      + Y+ P+F+G S++ M  LKA
Sbjct: 1470 CLSYPCHATSTCIDLPSATFVCICRPNYTGLLCDEEINKRDYEVPSFDGKSYVRMNRLKA 1529

Query: 94   YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            Y+K S+E+EFKT  ++GI+LYNQQ  DGTGDFVSLAIV+
Sbjct: 1530 YHKFSVEVEFKTYADNGIILYNQQKSDGTGDFVSLAIVD 1568

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020061|gb|EGI60512.1| Agrin [Acromyrmex echinatior]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 77/122 (63%), Gaps = 5/122 (4%)

Query: 11  GCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA 70
           GC SA+ V  +        E   CLS+PC   +TC D     F C+C P +TG LC    
Sbjct: 182 GCYSANYVPVTPTQ-----EFRACLSYPCHMTSTCIDLPSATFVCICRPNYTGLLCDEEI 236

Query: 71  PPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI 130
             + Y+ P+F+G S++ M  LKAY+K SIE+EFKT  ++GI+LYNQQ  DG+GDFVSLAI
Sbjct: 237 NKRDYEIPSFDGKSYVRMNRLKAYHKFSIEVEFKTYADNGIILYNQQKNDGSGDFVSLAI 296

Query: 131 VN 132
           V+
Sbjct: 297 VD 298

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850257|ref|XP_003700712.1| PREDICTED: agrin-like [Megachile rotundata]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 69/99 (69%)

Query: 34   CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKA 93
            CLS+PC   +TC D     F C+C P +TG LC+     + Y  P+F+G S++ M  LKA
Sbjct: 1043 CLSYPCHATSTCIDLPSATFVCMCRPNYTGLLCNEEINKRDYKVPSFDGKSYVRMNRLKA 1102

Query: 94   YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            Y+K S+E+EFKT  ++GI+LYNQQ  DGTGDFVSLAIV+
Sbjct: 1103 YHKFSVEVEFKTYADNGIILYNQQKSDGTGDFVSLAIVD 1141

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179324|gb|EFN67688.1| Agrin [Camponotus floridanus]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 69/103 (66%)

Query: 30  EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK 89
           E   CLS+PC   ATC D     F C C P +TG LC      + Y+ P+F+G S++ M 
Sbjct: 850 EFRACLSYPCHMTATCIDLPSATFLCRCRPNYTGLLCDEEINKRDYEIPSFDGKSYVRMS 909

Query: 90  TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            LKAY+K +IE+EFKT  ++GI+LYNQQ  DGTGDFVSLAIV+
Sbjct: 910 RLKAYHKFNIEVEFKTYADNGIILYNQQKSDGTGDFVSLAIVD 952

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357602540|gb|EHJ63446.1| hypothetical protein KGM_16605 [Danaus plexippus]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 4/107 (3%)

Query: 30   EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT---RAPPKLY-DTPAFNGSSH 85
            E S CLS PC N  TC D     + C+CS  +TG  C +     PP  Y +TP+F GSS+
Sbjct: 1284 EYSACLSDPCYNFGTCIDLPGSTYTCVCSESYTGSNCESLIKDGPPITYIETPSFVGSSY 1343

Query: 86   IVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            I ++ LKAY+KL+I+IEFK    +G+LLYNQQ LDGTGDFVSLA+VN
Sbjct: 1344 IRLRPLKAYHKLNIDIEFKAFSENGVLLYNQQKLDGTGDFVSLALVN 1390

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027342|ref|XP_003697386.1| PREDICTED: agrin-like [Apis florea]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 34   CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKA 93
            CLS+PC   +TC D     F C+C P +TG  C   +  + Y+  +F+G S++ M  LKA
Sbjct: 973  CLSYPCHATSTCIDLPSATFVCICRPNYTGRFCEEMSK-RDYEVASFDGKSYVRMNRLKA 1031

Query: 94   YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
            Y+K S+E+EFKT  ++GI+LYNQQ  DGTGDFVSLAIV+
Sbjct: 1032 YHKFSVEVEFKTYADNGIILYNQQKSDGTGDFVSLAIVD 1070

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
UNIPROTKB|F1P3E3	1952	AGRN "Agrin" [Gallus gallus (t	0.696	0.047	0.44	8.1e-14
UNIPROTKB|F1NWQ6	1998	AGRN "Agrin" [Gallus gallus (t	0.696	0.046	0.44	8.3e-14
UNIPROTKB|P31696	2081	AGRN "Agrin" [Gallus gallus (t	0.696	0.044	0.44	8.7e-14
UNIPROTKB|F1LQ53	963	Agrn "Agrin" [Rattus norvegicu	0.712	0.097	0.4	1.1e-13
RGD|2067	1959	Agrn "agrin" [Rattus norvegicu	0.780	0.052	0.376	2.2e-13
UNIPROTKB|I3LGD9	2039	I3LGD9 "Uncharacterized protei	0.772	0.050	0.388	7.7e-13
UNIPROTKB|F1Q2Z6	2046	AGRN "Uncharacterized protein"	0.765	0.049	0.394	1.6e-12
ZFIN|ZDB-GENE-030131-1033	2028	agrn "agrin" [Danio rerio (tax	0.712	0.046	0.38	2e-12
UNIPROTKB|F1MSI2	2032	AGRN "Uncharacterized protein"	0.772	0.050	0.370	5.4e-12
MGI|MGI:87961	1950	Agrn "agrin" [Mus musculus (ta	0.712	0.048	0.39	6.6e-12

UNIPROTKB|F1P3E3 AGRN "Agrin" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 8.1e-14, P = 8.1e-14
 Identities = 44/100 (44%), Positives = 59/100 (59%)

Query:    33 PCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTL 91
             PC SHPC +G TC+D  DG  F C C     G +C     P  Y  P+F G S++  K +
Sbjct:  1228 PCDSHPCLHGGTCED--DGKEFTCSCPAGKGGAVCEK---PIRYFIPSFGGKSYLAFKMM 1282

Query:    92 KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             KAY+ + I +EF+  +  G+LLYN QN  G  DF+SLA+V
Sbjct:  1283 KAYHTVRIAMEFRATELSGLLLYNGQNR-GK-DFISLALV 1320

GO:0005605 "basal lamina" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

UNIPROTKB|F1NWQ6 AGRN "Agrin" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 8.3e-14, P = 8.3e-14
 Identities = 44/100 (44%), Positives = 59/100 (59%)

Query:    33 PCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTL 91
             PC SHPC +G TC+D  DG  F C C     G +C     P  Y  P+F G S++  K +
Sbjct:  1280 PCDSHPCLHGGTCED--DGKEFTCSCPAGKGGAVCEK---PIRYFIPSFGGKSYLAFKMM 1334

Query:    92 KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             KAY+ + I +EF+  +  G+LLYN QN  G  DF+SLA+V
Sbjct:  1335 KAYHTVRIAMEFRATELSGLLLYNGQNR-GK-DFISLALV 1372

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

UNIPROTKB|P31696 AGRN "Agrin" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 8.7e-14, P = 8.7e-14
 Identities = 44/100 (44%), Positives = 59/100 (59%)

Query:    33 PCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTL 91
             PC SHPC +G TC+D  DG  F C C     G +C     P  Y  P+F G S++  K +
Sbjct:  1350 PCDSHPCLHGGTCED--DGREFTCRCPAGKGGAVCEK---PIRYFIPSFGGKSYLAFKMM 1404

Query:    92 KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             KAY+ + I +EF+  +  G+LLYN QN  G  DF+SLA+V
Sbjct:  1405 KAYHTVRIAMEFRATELSGLLLYNGQNR-GK-DFISLALV 1442

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007171 "activation of transmembrane receptor protein tyrosine kinase activity" evidence=IDA

GO:0035374 "chondroitin sulfate binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045202 "synapse" evidence=ISS

GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=ISS

GO:0043236 "laminin binding" evidence=IDA

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0051491 "positive regulation of filopodium assembly" evidence=ISS

GO:0033691 "sialic acid binding" evidence=IDA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0002162 "dystroglycan binding" evidence=IDA

GO:0043113 "receptor clustering" evidence=ISS;IDA

GO:0030548 "acetylcholine receptor regulator activity" evidence=IDA

GO:0030297 "transmembrane receptor protein tyrosine kinase activator activity" evidence=IDA

GO:0005605 "basal lamina" evidence=ISS

UNIPROTKB|F1LQ53 Agrn "Agrin" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 40/100 (40%), Positives = 60/100 (60%)

Query:    34 CLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLK 92
             C S PC +G TCQD++ G  F C C+    G +C    PP +   PAF G S +   TL+
Sbjct:   251 CDSQPCLHGGTCQDQDSGKGFTCSCTAGRGGSVCEKVQPPSM---PAFKGHSFLAFPTLR 307

Query:    93 AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             AY+ L + +EF+  + +G+LLYN  N  G  DF++LA+++
Sbjct:   308 AYHTLRLALEFRALETEGLLLYNG-NARGK-DFLALALLD 345

GO:0005605 "basal lamina" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

RGD|2067 Agrn "agrin" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 41/109 (37%), Positives = 62/109 (56%)

Query:    25 PNLRLEESPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNGS 83
             P  +     C S PC +G TCQD++ G  F C C+    G +C    PP +   PAF G 
Sbjct:  1215 PGHQQPSKSCDSQPCLHGGTCQDQDSGKGFTCSCTAGRGGSVCEKVQPPSM---PAFKGH 1271

Query:    84 SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             S +   TL+AY+ L + +EF+  + +G+LLYN  N  G  DF++LA+++
Sbjct:  1272 SFLAFPTLRAYHTLRLALEFRALETEGLLLYNG-NARGK-DFLALALLD 1318

GO:0001932 "regulation of protein phosphorylation" evidence=IDA

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISO

GO:0002162 "dystroglycan binding" evidence=IDA

GO:0005509 "calcium ion binding" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005578 "proteinaceous extracellular matrix" evidence=TAS

GO:0005604 "basement membrane" evidence=ISO;IDA

GO:0005605 "basal lamina" evidence=ISO;ISS

GO:0005615 "extracellular space" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0007268 "synaptic transmission" evidence=ISO;IMP

GO:0007416 "synapse assembly" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=ISO;TAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0010469 "regulation of receptor activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030548 "acetylcholine receptor regulator activity" evidence=ISO

GO:0031012 "extracellular matrix" evidence=ISO

GO:0032314 "regulation of Rac GTPase activity" evidence=ISO

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IDA

GO:0033691 "sialic acid binding" evidence=ISS

GO:0035374 "chondroitin sulfate binding" evidence=ISS

GO:0043113 "receptor clustering" evidence=ISO;ISS;IDA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=ISS

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

GO:0045202 "synapse" evidence=ISO;IDA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=ISO

GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0051491 "positive regulation of filopodium assembly" evidence=IDA

GO:2000541 "positive regulation of protein geranylgeranylation" evidence=ISO

UNIPROTKB|I3LGD9 I3LGD9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 7.7e-13, P = 7.7e-13
 Identities = 42/108 (38%), Positives = 58/108 (53%)

Query:    25 PNLRLEESPCLSHPCQNGATCQDE-EDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGS 83
             P  +   SPC S PC +G TCQD+   G F C C     G  C    P      PAF G 
Sbjct:  1323 PGTQKPPSPCDSQPCLHGGTCQDQGPGGAFTCSCPAGRGGTFCEEALP---LSRPAFGGR 1379

Query:    84 SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             S +   TL+AY+ L + +EF+  + +G+LLYN  N  G  DF++LA++
Sbjct:  1380 SFLAFPTLRAYHTLRLALEFRALEPEGLLLYNG-NARGK-DFLALALL 1425

GO:0043236 "laminin binding" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

UNIPROTKB|F1Q2Z6 AGRN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 43/109 (39%), Positives = 61/109 (55%)

Query:    25 PNLRLEESPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLY-DTPAFNG 82
             P  +    PC S PC +G TCQD++ G  F C C     G +C  +A   LY   PAFNG
Sbjct:  1325 PGTQQPPKPCDSQPCLHGGTCQDQDSGGGFTCSCPVGRRGAVCE-KA---LYLSVPAFNG 1380

Query:    83 SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
              S +   TL+AY+ L + +EF+  +  G+LLYN  N  G  DF++L ++
Sbjct:  1381 RSFLAFPTLRAYHTLRLALEFRALEPQGLLLYNG-NAQGK-DFLALTLL 1427

GO:0043113 "receptor clustering" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-030131-1033 agrn "agrin" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 38/100 (38%), Positives = 59/100 (59%)

Query:    32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTL 91
             SPC S PC++G TC+ E+D  F C+C     G +C        Y  P+F G S++  +T+
Sbjct:  1321 SPCDSQPCRHGGTCE-EDDNDFTCICPAGRGGAVCEKVIK---YFIPSFGGKSYMAFQTM 1376

Query:    92 KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             KAY+ + I +EF+ ++  GILLY+ Q      DF+SL ++
Sbjct:  1377 KAYHTVRIAMEFRASEMTGILLYDGQK--SKKDFLSLTLI 1414

GO:0005605 "basal lamina" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007417 "central nervous system development" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MSI2 AGRN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 40/108 (37%), Positives = 56/108 (51%)

Query:    25 PNLRLEESPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNGS 83
             P  +    PC S PC +G TCQD+  G  F C C     G +C     P +   PAF G 
Sbjct:  1311 PGTQQPRRPCDSQPCLHGGTCQDQGSGADFTCSCPAGTGGAVCEKALHPSV---PAFGGH 1367

Query:    84 SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             S +   TL+AY+ L + +EF+  +  G+LLYN  N  G  DF+ L ++
Sbjct:  1368 SFLAFPTLRAYHTLRLALEFRALEPQGLLLYNG-NARGK-DFLGLVLL 1413

GO:0043113 "receptor clustering" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

MGI|MGI:87961 Agrn "agrin" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 39/100 (39%), Positives = 58/100 (58%)

Query:    34 CLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLK 92
             C S PC +G TCQD + G  F C C+    G +C     P +   PAF G S +   TL+
Sbjct:  1215 CDSQPCLHGGTCQDLDSGKGFSCSCTAGRAGTVCEKVQLPSV---PAFKGHSFLAFPTLR 1271

Query:    93 AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             AY+ L + +EF+  + +G+LLYN  N  G  DF++LA+++
Sbjct:  1272 AYHTLRLALEFRALETEGLLLYNG-NARGK-DFLALALLD 1309

GO:0001932 "regulation of protein phosphorylation" evidence=ISO

GO:0001934 "positive regulation of protein phosphorylation" evidence=IDA

GO:0002162 "dystroglycan binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005604 "basement membrane" evidence=ISO;IDA

GO:0005605 "basal lamina" evidence=ISO;IDA

GO:0005615 "extracellular space" evidence=IDA;TAS

GO:0007009 "plasma membrane organization" evidence=IMP

GO:0007268 "synaptic transmission" evidence=ISO;IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007416 "synapse assembly" evidence=ISO

GO:0007528 "neuromuscular junction development" evidence=IGI

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

GO:0010469 "regulation of receptor activity" evidence=IDA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030548 "acetylcholine receptor regulator activity" evidence=IDA

GO:0031012 "extracellular matrix" evidence=ISO

GO:0032314 "regulation of Rac GTPase activity" evidence=IDA

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISO

GO:0043113 "receptor clustering" evidence=IGI;ISO;IMP;IDA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IMP

GO:0045202 "synapse" evidence=ISO;IDA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IDA

GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0051491 "positive regulation of filopodium assembly" evidence=ISO

GO:2000541 "positive regulation of protein geranylgeranylation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	3e-08
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	6e-06
smart00282	132	smart00282, LamG, Laminin G domain	2e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	2e-04
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	2e-04
pfam00008	32	pfam00008, EGF, EGF-like domain	0.003

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 80  FNGSSHIVMKTLKA-YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
           F+GSS++ + TL A   +LSI   F+T   +G+LLY        GDF++L + +
Sbjct: 4   FSGSSYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGS--QNGGDFLALELED 55

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 40.3 bits (95), Expect = 6e-06
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 34 CLS-HPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
          C S +PCQNG TC +     + C C P +TG  C
Sbjct: 5  CASGNPCQNGGTCVNTVGS-YRCSCPPGYTGRNC 37

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 98  SIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
           SI   F+T   +G+LLY      G GD+++L + +
Sbjct: 1   SISFSFRTTSPNGLLLYAGSK--GGGDYLALELRD 33

Length = 132

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 33 PC-LSHPCQNGATCQDEEDGLFECLCSPEFTG 63
           C  S+PC NG TC +     + C+C P +TG
Sbjct: 1  ECAASNPCSNGGTCVNTPGS-YRCVCPPGYTG 31

Length = 36

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 34 CLS-HPCQNGATCQDEEDGLFECLCSPEFT 62
          C S +PCQNG TC +     + C C P +T
Sbjct: 5  CASGNPCQNGGTCVNTVGS-YRCECPPGYT 33

Length = 39

>gnl|CDD|215652 pfam00008, EGF, EGF-like domain

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 37 HPCQNGATCQDEEDGLFECLCSPEFTG 63
          +PC NG TC D   G + C C   +TG
Sbjct: 5  NPCSNGGTCVDTPGG-YTCECPEGYTG 30

There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains. Length = 32

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG4289|consensus	2531		99.8
KOG3514|consensus	1591		99.27
KOG1219|consensus	4289		99.25
KOG4289|consensus	2531		99.1
KOG1219|consensus	4289		99.05
KOG3516|consensus	1306		99.04
KOG3516|consensus	1306		99.02
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.85
KOG3514|consensus	1591		98.74
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	98.5
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	98.29
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	98.08
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.99
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.97
smart00181	35	EGF Epidermal growth factor-like domain.	97.93
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	97.1
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	97.07
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	95.77
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	95.13
KOG1214|consensus	1289		95.06
PF12662	24	cEGF: Complement Clr-like EGF-like	95.0
PHA02887	126	EGF-like protein; Provisional	94.82
KOG1225|consensus	525		94.33
KOG1217|consensus	487		94.04
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	93.96
KOG1217|consensus	487		93.96
KOG4260|consensus	350		93.08
smart00051	63	DSL delta serrate ligand.	92.6
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	91.82
KOG1225|consensus	525		90.99
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	90.67
KOG1214|consensus	1289		87.47
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	86.51
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	84.85
PF12955	103	DUF3844: Domain of unknown function (DUF3844); Int	82.98
KOG1226|consensus	783		81.9
KOG1836|consensus	1705		81.47

>KOG4289|consensus

Probab=99.80  E-value=2.1e-19  Score=150.20  Aligned_cols=117  Identities=28%  Similarity=0.539  Sum_probs=98.0

Q ss_pred             CccCCeecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCC------------------
Q psy11297         11 GCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPP------------------   72 (132)
Q Consensus        11 ~~~~~~~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~------------------   72 (132)
                      +.++.. ||..|+|..|+.++|.|-+.||.|+|+|....+ +|+|.|.+||+|++||.+...                  
T Consensus      1220 nglrCr-CPpGFTgd~CeTeiDlCYs~pC~nng~C~srEg-gYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~ 1297 (2531)
T KOG4289|consen 1220 NGLRCR-CPPGFTGDYCETEIDLCYSGPCGNNGRCRSREG-GYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLL 1297 (2531)
T ss_pred             CceeEe-CCCCCCcccccchhHhhhcCCCCCCCceEEecC-ceeEEecCCccccceeeecccCccccceecCCCEEeecC
Confidence            334433 455566999999999999999999999999985 599999999999999986532                  


Q ss_pred             -----------------CCCCCCCCCCcceEEecccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         73 -----------------KLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        73 -----------------c~~~~~~~~g~~~~~~~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                                       |+....+|.+.+|+.|.+++.+.++.++|.|.|...+|+|+|+|.+   ++||++|++++
T Consensus      1298 nggf~c~Cp~ge~e~prC~v~trSFp~~sfv~frglrqRfh~TlslsfaT~~~nGlL~ynGne---khDFvalevVd 1371 (2531)
T KOG4289|consen 1298 NGGFCCHCPYGEFEDPRCEVTTRSFPPESFVTFRGLRQRFHFTLSLSFATIERNGLLLYNGNE---KHDFVALEVVD 1371 (2531)
T ss_pred             CCceeccCCCcccCCCceEEEeeccCchheEEEeccccceEEEEEEEEEEeeecceEEecCCc---ccceEeeeeee
Confidence                             1123345777889999999999999999999999999999999954   89999999975

>KOG3514|consensus

Probab=99.27  E-value=1.7e-11  Score=101.69  Aligned_cols=104  Identities=27%  Similarity=0.551  Sum_probs=85.2

Q ss_pred             CCCCCCcccCCC-CCCCCCCCCCCeEeeCCCCceEEeC-CCCccCCcccccCCCCCCCCCCCCCcceEEecc--cCCcee
Q psy11297         21 SQASPNLRLEES-PCLSHPCQNGATCQDEEDGLFECLC-SPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKT--LKAYNK   96 (132)
Q Consensus        21 ~~~g~~C~~~~~-~C~~~pC~ngg~C~~~~~~~~~C~C-~~g~~G~~C~~~~~~c~~~~~~~~g~~~~~~~~--~~~~~~   96 (132)
                      ..+-+.|..... .|.++||+|+|+|...|+. |.|.| ..+|.|+.|+.+.     ....++|.-|+.+-.  .+....
T Consensus       612 agvkpsCs~~~~~~C~~nPC~N~g~C~egwNr-fiCDCs~T~~~G~~CerE~-----t~ls~nGs~~m~i~L~~~~~tq~  685 (1591)
T KOG3514|consen  612 AGVKPSCSLSNEKICESNPCQNGGKCSEGWNR-FICDCSGTGFEGRTCEREA-----TALSYNGSMSMKIVLPHTMHTQA  685 (1591)
T ss_pred             cccCcccchhhccccCCCcccCCCCccccccc-cccccccCcccCcccccee-----eeEEEcCeeeEEEEecccceeec
Confidence            445668875544 7999999999999999985 99999 6789999999877     678889988887542  234456


Q ss_pred             EEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         97 LSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        97 ~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      .+++|+|||..+.|+||-.+++  +..|-|.|+|.+
T Consensus       686 E~v~iRF~t~r~~Gll~~Tta~--~s~D~l~l~L~~  719 (1591)
T KOG3514|consen  686 EDVSIRFRTQRAYGLLFATTAR--GSADTLRLELDA  719 (1591)
T ss_pred             ceEEEEEEecccceeEEEeccC--CCCceEEEEEec
Confidence            7899999999999999988886  358999999864

>KOG1219|consensus

Probab=99.25  E-value=1.5e-11  Score=107.45  Aligned_cols=72  Identities=26%  Similarity=0.510  Sum_probs=65.0

Q ss_pred             ecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccccc-CCCCCCCCCCCCCcceEEecc
Q psy11297         17 VVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR-APPKLYDTPAFNGSSHIVMKT   90 (132)
Q Consensus        17 ~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~-~~~c~~~~~~~~g~~~~~~~~   90 (132)
                      -||..|.|.+||.++.+|.++||.+||+|+...++ |.|.|+.||+|.+||.+ +++|. .++|.+|+.|+..++
T Consensus      3889 kCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~-f~CnC~~gyTG~~Ce~~Gi~eCs-~n~C~~gg~C~n~~g 3961 (4289)
T KOG1219|consen 3889 KCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNG-FLCNCPNGYTGKRCEARGISECS-KNVCGTGGQCINIPG 3961 (4289)
T ss_pred             eCcccccCcccccccccccCCCCCCCCEEEecCCC-eeEeCCCCccCceeecccccccc-cccccCCceeeccCC
Confidence            46677889999999999999999999999999865 99999999999999998 89997 889999998888764

>KOG4289|consensus

Probab=99.10  E-value=6.7e-10  Score=94.60  Aligned_cols=103  Identities=22%  Similarity=0.401  Sum_probs=80.1

Q ss_pred             CCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCCCCCCCCCCcceEEecccC--CceeEE
Q psy11297         21 SQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLK--AYNKLS   98 (132)
Q Consensus        21 ~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~~~~~~~~g~~~~~~~~~~--~~~~~~   98 (132)
                      ..+...|....+-|+..+|.|+|+|++.|+ +|.|.||.+|.|..|++.+.    ...-|.|.+-+....+.  ....+.
T Consensus      1491 ngt~eGC~ark~fCdsg~C~n~g~CvnrWg-~~~C~CP~~fggk~c~~~m~----~pq~frG~sl~sw~~~~~~vSvPwy 1565 (2531)
T KOG4289|consen 1491 NGTHEGCKARKNFCDSGQCSNGGTCVNRWG-GFSCECPLGFGGKGCCQGMA----HPQHFRGHSLVSWEGLPSQVSVPWY 1565 (2531)
T ss_pred             cCcccCchhhhcccCCCccCCCCeeecccC-cEeecCccccCCcchhhccC----CchhccccceeeecCCCcceecceE
Confidence            344678988889999999999999999995 59999999999999998773    55677887777655443  234678


Q ss_pred             EEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEc
Q psy11297         99 IEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV  131 (132)
Q Consensus        99 i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~  131 (132)
                      ++|+|||+..+|+||-....   ...-+.|+|.
T Consensus      1566 lsl~FRTr~ad~vl~~~~~~---~rst~~lqld 1595 (2531)
T KOG4289|consen 1566 LSLMFRTRRADGVLMQAEFG---GRSTYNLQLD 1595 (2531)
T ss_pred             EEEEEEeeccccEEEEEEeC---CCceEEEEEc
Confidence            99999999999999976653   1223555553

>KOG1219|consensus

Probab=99.05  E-value=2.3e-10  Score=100.40  Aligned_cols=67  Identities=28%  Similarity=0.713  Sum_probs=60.6

Q ss_pred             CCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCCCCCCCCCCcceEEec
Q psy11297         22 QASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK   89 (132)
Q Consensus        22 ~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~~~~~~~~g~~~~~~~   89 (132)
                      ..-+.|....++|+.+||+|||+|.....++|.|.|+..|+|.+||.++..|. ++||..|++|+.+.
T Consensus      3855 ~l~pgC~l~~d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~-snPC~~GgtCip~~ 3921 (4289)
T KOG1219|consen 3855 GLQPGCSLLTDPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCA-SNPCLTGGTCIPFY 3921 (4289)
T ss_pred             cccccccccccccccCcccCCCEecCCCCCceEEeCcccccCccccccccccc-CCCCCCCCEEEecC
Confidence            34567876669999999999999999887889999999999999999999998 99999999999875

>KOG3516|consensus

Probab=99.04  E-value=1.5e-09  Score=91.11  Aligned_cols=44  Identities=23%  Similarity=0.381  Sum_probs=40.1

Q ss_pred             ceEEecccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEc
Q psy11297         84 SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV  131 (132)
Q Consensus        84 ~~~~~~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~  131 (132)
                      +|++|+..+.....+|+|.|||..+.|++|.+.+    ..|||.|+|.
T Consensus       798 syL~fp~f~~~~saDIsf~FrTt~~~gvflen~g----~~dfir~eL~  841 (1306)
T KOG3516|consen  798 SYLHFPPFHNELSADISFFFRTTASSGVFLENHG----INDFIRLELS  841 (1306)
T ss_pred             ceeecCcccCcccccEEEEEEecCCceEeeeccC----CCceEEEEEc
Confidence            5888888888888999999999999999999998    5999999986

>KOG3516|consensus

Probab=99.02  E-value=2.4e-09  Score=90.01  Aligned_cols=96  Identities=26%  Similarity=0.537  Sum_probs=77.3

Q ss_pred             CCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeC-CCCccCCcccccCCCCCCCCCCCCCcceEEeccc-----------
Q psy11297         24 SPNLRLEESPCLSHPCQNGATCQDEEDGLFECLC-SPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTL-----------   91 (132)
Q Consensus        24 g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C-~~g~~G~~C~~~~~~c~~~~~~~~g~~~~~~~~~-----------   91 (132)
                      -+.|+   ..|++.||.|||.|+..+.+ |+|.| ...|.|+.|..++      ...|..+++++|+-.           
T Consensus       951 ~~GC~---GhCss~~C~NGG~Cvery~g-ytCDCs~Tay~Gp~Cs~ei------g~~fe~gs~i~y~fq~~~~~a~~~~~ 1020 (1306)
T KOG3516|consen  951 SPGCE---GHCSSYPCLNGGHCVERYDG-YTCDCSRTAYDGPFCSKEI------GVFFERGSSIRYNFQKPMRSAVFESS 1020 (1306)
T ss_pred             cCCCc---cccccccccCCCEEEEecCc-eeeccccCcCCCCcccccc------ceEecCCceEEEeccchHHHhhhhhh
Confidence            45665   47999999999999999975 99999 5669999999876      456777888887521           


Q ss_pred             --------CCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         92 --------KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        92 --------~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                              .......|.|.|+|+...++|||.++.   ..||+++.|.+
T Consensus      1021 ~~~~~~~~~~~~~e~i~~sftTt~~ps~LLfvssF---~~~y~~V~v~~ 1066 (1306)
T KOG3516|consen 1021 RVKQKLEIEINPNEEINFSFTTTRAPSDLLFVSSF---TDDYLAVLVKD 1066 (1306)
T ss_pred             hhhhccccccCccceEEEEEEeccCceEEEEeecc---ccceEEEEEeC
Confidence                    123467899999999999999999987   57899888754

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.85  E-value=2.4e-09  Score=54.07  Aligned_cols=32  Identities=50%  Similarity=1.078  Sum_probs=28.1

Q ss_pred             CCCCCCCCCCeEeeCCCCceEEeCCCCccCCc
Q psy11297         34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYL   65 (132)
Q Consensus        34 C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~   65 (132)
                      |.++||.|+|+|++...++|+|.|++||+|++
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence            67889999999998874469999999999974

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG3514|consensus

Probab=98.74  E-value=4.1e-08  Score=82.14  Aligned_cols=89  Identities=24%  Similarity=0.531  Sum_probs=75.9

Q ss_pred             CCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCCCCCCCCCCcceEEecccC---CceeEEEEEEEEeCCCCeEE
Q psy11297         36 SHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLK---AYNKLSIEIEFKTNKNDGIL  112 (132)
Q Consensus        36 ~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~~~~~~~~g~~~~~~~~~~---~~~~~~i~~~f~t~~~~g~l  112 (132)
                      ..+|+|++.|.....+ -.|.|...+.|.+|+...++   ....|.|..|+-|..-.   .....+|+|.|||...+|+|
T Consensus       215 ~~~c~~~g~c~s~d~g-p~c~c~~~~dgq~cekeK~~---~eaTF~G~ef~~YDls~npI~s~~d~itl~FrT~q~ngll  290 (1591)
T KOG3514|consen  215 QFVCLNDGECYSSDDG-PHCDCQFDHDGQNCEKEKND---GEATFGGDEFVGYDLSQNPIRSKKDNITLTFRTVQGNGLL  290 (1591)
T ss_pred             cceeccCCeEecCCCC-CccccccccCccccccccCc---ceEEecCceEEEeeccCCcccccccceEEEEEEecCceeE
Confidence            3679999999998754 99999999999999998865   67889999999886322   23466899999999999999


Q ss_pred             EEeccCCCCCCCeEEEEEcC
Q psy11297        113 LYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus       113 l~~~~~~~~~~d~~~l~l~~  132 (132)
                      ||.|.    ..||+.|+|+|
T Consensus       291 fytG~----~~dYlnlaL~d  306 (1591)
T KOG3514|consen  291 FYTGD----EKDYLNLALQD  306 (1591)
T ss_pred             EEccC----CcceeeEeecC
Confidence            99999    48999999986

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=98.50  E-value=2.3e-07  Score=48.24  Aligned_cols=36  Identities=42%  Similarity=1.005  Sum_probs=31.1

Q ss_pred             CCCCCC-CCCCCCCeEeeCCCCceEEeCCCCcc-CCccc
Q psy11297         31 ESPCLS-HPCQNGATCQDEEDGLFECLCSPEFT-GYLCH   67 (132)
Q Consensus        31 ~~~C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~-G~~C~   67 (132)
                      +++|.. +||.++++|++... +|.|.|+.||. |..|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g-~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVG-SYRCECPPGYTDGRNCE   39 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCC-CeEeECCCCCccCCcCC
Confidence            577887 89999999998874 59999999999 88874

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=98.29  E-value=1.6e-06  Score=44.47  Aligned_cols=36  Identities=42%  Similarity=1.011  Sum_probs=30.7

Q ss_pred             CCCCCC-CCCCCCCeEeeCCCCceEEeCCCCccCCccc
Q psy11297         31 ESPCLS-HPCQNGATCQDEEDGLFECLCSPEFTGYLCH   67 (132)
Q Consensus        31 ~~~C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~   67 (132)
                      +++|.. .+|.+++.|.+... .|.|.|+.+|.|..|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~-~~~C~C~~g~~g~~C~   38 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVG-SYRCSCPPGYTGRNCE   38 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCC-CeEeECCCCCcCCcCC
Confidence            467877 79999999998874 5999999999998874

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=98.08  E-value=2.1e-05  Score=52.31  Aligned_cols=52  Identities=38%  Similarity=0.676  Sum_probs=43.8

Q ss_pred             CCCCcceEEecccCC-ceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         79 AFNGSSHIVMKTLKA-YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        79 ~~~g~~~~~~~~~~~-~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      .|.+.+|+.++.... ...++|+++|||..++|+|||.+...  ..+|++|+|.+
T Consensus         3 ~F~g~~~i~~~~~~~~~~~~~i~~~frt~~~~g~l~~~~~~~--~~~~~~l~l~~   55 (151)
T cd00110           3 SFSGSSYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGSQN--GGDFLALELED   55 (151)
T ss_pred             EeCCCceEEecCCCCCcceeEEEEEEEeCCCCeEEEEecCCC--CCCEEEEEEEC
Confidence            477789999986654 67889999999999999999999853  48999999874

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.99  E-value=1.5e-05  Score=40.06  Aligned_cols=32  Identities=44%  Similarity=1.189  Sum_probs=27.2

Q ss_pred             CC-CCCCCCCCeEeeCCCCceEEeCCCCccCC-cc
Q psy11297         34 CL-SHPCQNGATCQDEEDGLFECLCSPEFTGY-LC   66 (132)
Q Consensus        34 C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~G~-~C   66 (132)
                      |. ..+|.+++.|++... .|.|.|+.||.|. .|
T Consensus         2 C~~~~~C~~~~~C~~~~~-~~~C~C~~g~~g~~~C   35 (36)
T cd00053           2 CAASNPCSNGGTCVNTPG-SYRCVCPPGYTGDRSC   35 (36)
T ss_pred             CCCCCCCCCCCEEecCCC-CeEeECCCCCcccCCc
Confidence            44 678999999999884 5999999999998 65

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.97  E-value=1e-05  Score=43.15  Aligned_cols=32  Identities=31%  Similarity=0.935  Sum_probs=27.2

Q ss_pred             CCCCCCC--CCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         30 EESPCLS--HPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        30 ~~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      ++++|+.  ++|..++.|++.. |+|+|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~-Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTE-GSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEET-TEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCC-CCEEeeCCCCcE
Confidence            4678876  4698899999998 679999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.93  E-value=2.1e-05  Score=39.80  Aligned_cols=32  Identities=47%  Similarity=1.185  Sum_probs=26.6

Q ss_pred             CCC-CCCCCCCeEeeCCCCceEEeCCCCccC-Cccc
Q psy11297         34 CLS-HPCQNGATCQDEEDGLFECLCSPEFTG-YLCH   67 (132)
Q Consensus        34 C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~G-~~C~   67 (132)
                      |.. .+|.++ .|++.. ++|+|.|+.||.| ..|+
T Consensus         2 C~~~~~C~~~-~C~~~~-~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        2 CASGGPCSNG-TCINTP-GSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCcCCCCCC-EEECCC-CCeEeECCCCCccCCccC
Confidence            556 689998 999886 4699999999999 7664

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=97.10  E-value=0.00023  Score=28.41  Aligned_cols=13  Identities=46%  Similarity=1.193  Sum_probs=10.8

Q ss_pred             EEeCCCCccCCcc
Q psy11297         54 ECLCSPEFTGYLC   66 (132)
Q Consensus        54 ~C~C~~g~~G~~C   66 (132)
                      .|.|++||+|.+|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            5899999999987

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.07  E-value=0.001  Score=33.25  Aligned_cols=27  Identities=30%  Similarity=0.716  Sum_probs=23.3

Q ss_pred             CCCCCCCeEeeCCCCceEEeCCCCccCCcc
Q psy11297         37 HPCQNGATCQDEEDGLFECLCSPEFTGYLC   66 (132)
Q Consensus        37 ~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C   66 (132)
                      ..|.++|+|+...   .+|.|..||+|+.|
T Consensus         6 ~~C~~~G~C~~~~---g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSPC---GRCVCDSGYTGPDC   32 (32)
T ss_pred             CccCCCCEEeCCC---CEEECCCCCcCCCC
Confidence            4689999999772   69999999999887

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=95.77  E-value=0.0075  Score=30.93  Aligned_cols=26  Identities=31%  Similarity=0.880  Sum_probs=18.9

Q ss_pred             CCCCCCeEeeCCCCceEEeCCCCccCC
Q psy11297         38 PCQNGATCQDEEDGLFECLCSPEFTGY   64 (132)
Q Consensus        38 pC~ngg~C~~~~~~~~~C~C~~g~~G~   64 (132)
                      .|-..++|++... +|+|.|++||.|.
T Consensus         7 ~C~~nA~C~~~~~-~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTNTGG-SYTCTCKPGYEGD   32 (36)
T ss_dssp             GS-TTCEEEE-TT-SEEEEE-CEEECC
T ss_pred             CCCCCcEeecCCC-CEEeECCCCCccC
Confidence            4666789999985 6999999999873

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=95.13  E-value=0.019  Score=37.68  Aligned_cols=39  Identities=26%  Similarity=0.510  Sum_probs=28.0

Q ss_pred             CCCCCC---CCCCCCCeEeeCC-CCceEEeCCCCccCCcccccC
Q psy11297         31 ESPCLS---HPCQNGATCQDEE-DGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        31 ~~~C~~---~pC~ngg~C~~~~-~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      +.+|.+   +=|.|| +|.-.. ...+.|.|..||+|.+||...
T Consensus        42 i~~Cp~ey~~YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh~d   84 (139)
T PHA03099         42 IRLCGPEGDGYCLHG-DCIHARDIDGMYCRCSHGYTGIRCQHVV   84 (139)
T ss_pred             cccCChhhCCEeECC-EEEeeccCCCceeECCCCccccccccee
Confidence            445653   458887 897331 125999999999999998743

>KOG1214|consensus

Probab=95.06  E-value=0.03  Score=47.29  Aligned_cols=42  Identities=26%  Similarity=0.656  Sum_probs=34.7

Q ss_pred             CCCCCCC--CcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccC
Q psy11297         19 QSSQASP--NLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTG   63 (132)
Q Consensus        19 p~~~~g~--~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G   63 (132)
                      |++. |.  .| .+.|.|+++.|-..++|.+.. ++|+|.|.+||.|
T Consensus       815 PGfs-GDG~~c-~dvDeC~psrChp~A~Cyntp-gsfsC~C~pGy~G  858 (1289)
T KOG1214|consen  815 PGFS-GDGHQC-TDVDECSPSRCHPAATCYNTP-GSFSCRCQPGYYG  858 (1289)
T ss_pred             CCcc-CCcccc-ccccccCccccCCCceEecCC-CcceeecccCccC
Confidence            6655 44  44 467999999999999999998 5699999999976

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=95.00  E-value=0.027  Score=26.19  Aligned_cols=16  Identities=31%  Similarity=1.055  Sum_probs=12.1

Q ss_pred             ceEEeCCCCcc----CCccc
Q psy11297         52 LFECLCSPEFT----GYLCH   67 (132)
Q Consensus        52 ~~~C~C~~g~~----G~~C~   67 (132)
                      +|+|.|++||.    |..|+
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~   20 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCE   20 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccc
Confidence            49999999985    45553

>PHA02887 EGF-like protein; Provisional

Probab=94.82  E-value=0.03  Score=36.16  Aligned_cols=36  Identities=25%  Similarity=0.575  Sum_probs=26.1

Q ss_pred             CCCCC---CCCCCCCeEeeCC-CCceEEeCCCCccCCcccc
Q psy11297         32 SPCLS---HPCQNGATCQDEE-DGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        32 ~~C~~---~pC~ngg~C~~~~-~~~~~C~C~~g~~G~~C~~   68 (132)
                      .+|.+   +=|.| |+|.-.. .....|.|+.||+|.+|+.
T Consensus        84 ~pC~~eyk~YCiH-G~C~yI~dL~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887         84 EKCKNDFNDFCIN-GECMNIIDLDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             cccChHhhCEeeC-CEEEccccCCCceeECCCCcccCCCCc
Confidence            45653   45885 5998321 1248999999999999986

>KOG1225|consensus

Probab=94.33  E-value=0.07  Score=43.08  Aligned_cols=44  Identities=30%  Similarity=0.773  Sum_probs=29.8

Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         18 VQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      |+..|.|..|+...  |. ..|.++|.|+  . +  +|.|.+||+|..|++.
T Consensus       300 C~~g~~G~dCs~~~--cp-adC~g~G~Ci--~-G--~C~C~~Gy~G~~C~~~  343 (525)
T KOG1225|consen  300 CNPGYSGKDCSIRR--CP-ADCSGHGKCI--D-G--ECLCDEGYTGELCIQR  343 (525)
T ss_pred             cCCCcccccccccc--CC-ccCCCCCccc--C-C--ceEeCCCCcCCccccc
Confidence            44555577775432  43 5677778887  2 3  7888888888888876

>KOG1217|consensus

Probab=94.04  E-value=0.088  Score=40.81  Aligned_cols=53  Identities=30%  Similarity=0.698  Sum_probs=43.4

Q ss_pred             eecCCCCCCCCcccCCCCCC--CCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         16 SVVQSSQASPNLRLEESPCL--SHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        16 ~~cp~~~~g~~C~~~~~~C~--~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      ..|...+.+..|....+.|.  ..+|.+++.|.+... .|.|.|+.+|.|..|+..
T Consensus       154 c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~-~~~C~c~~~~~~~~~~~~  208 (487)
T KOG1217|consen  154 CSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGG-SYLCSCPPGYTGSTCETT  208 (487)
T ss_pred             eeeCCCcccccccccccccccCCCCcCCCcccccCCC-CeeEeCCCCccCCcCcCC
Confidence            45666666888876667898  456999999999885 499999999999998865

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=93.96  E-value=0.057  Score=27.78  Aligned_cols=29  Identities=31%  Similarity=0.746  Sum_probs=21.0

Q ss_pred             CCCCCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         34 CLSHPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        34 C~~~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      |...+|..++.|....+|++.|.|.+||.
T Consensus         2 C~~~~cP~NA~C~~~~dG~eecrCllgyk   30 (37)
T PF12946_consen    2 CIDTKCPANAGCFRYDDGSEECRCLLGYK   30 (37)
T ss_dssp             -SSS---TTEEEEEETTSEEEEEE-TTEE
T ss_pred             ccCccCCCCcccEEcCCCCEEEEeeCCcc
Confidence            66678889999998877889999999985

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>KOG1217|consensus

Probab=93.96  E-value=0.17  Score=39.29  Aligned_cols=47  Identities=30%  Similarity=0.721  Sum_probs=36.6

Q ss_pred             CCCCCCCC--cccCCCCCCCCC-CCCCCeEeeCCCCceEEeCCCCccCCcc
Q psy11297         19 QSSQASPN--LRLEESPCLSHP-CQNGATCQDEEDGLFECLCSPEFTGYLC   66 (132)
Q Consensus        19 p~~~~g~~--C~~~~~~C~~~p-C~ngg~C~~~~~~~~~C~C~~g~~G~~C   66 (132)
                      +..+.+..  ...+++.|...+ |.++++|....+ .|.|.|+++|.|..|
T Consensus       257 ~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~-~~~C~C~~g~~g~~~  306 (487)
T KOG1217|consen  257 PEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPG-SYRCTCPPGFTGRLC  306 (487)
T ss_pred             CCCccccccceeeeccccCCCCccCCCCeeecCCC-cceeeCCCCCCCCCC
Confidence            33343554  234678899874 999999999875 499999999999998

>KOG4260|consensus

Probab=93.08  E-value=0.11  Score=38.53  Aligned_cols=47  Identities=26%  Similarity=0.703  Sum_probs=35.4

Q ss_pred             cCCCCCCCCcccCCCCC---CCCCCCCCCeEeeC--CCCceEEeCCCCccCCcccc
Q psy11297         18 VQSSQASPNLRLEESPC---LSHPCQNGATCQDE--EDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C---~~~pC~ngg~C~~~--~~~~~~C~C~~g~~G~~C~~   68 (132)
                      ||...-|++|.    .|   +..||..+|.|...  +.|+-.|.|.+||+|+.|..
T Consensus       132 Cp~gtyGpdCl----~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~  183 (350)
T KOG4260|consen  132 CPDGTYGPDCL----QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY  183 (350)
T ss_pred             cCCCCcCCccc----cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccc
Confidence            45444499997    45   46789999999843  33567999999999999865

>smart00051 DSL delta serrate ligand

Probab=92.60  E-value=0.19  Score=29.04  Aligned_cols=42  Identities=17%  Similarity=0.311  Sum_probs=27.5

Q ss_pred             cCCCCCCCCcccCCCCCCC-CCCCCCCeEeeCCCCceEEeCCCCccCCcc
Q psy11297         18 VQSSQASPNLRLEESPCLS-HPCQNGATCQDEEDGLFECLCSPEFTGYLC   66 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C   66 (132)
                      |+..+-|..|..   .|.+ +-+.++.+|...  |  .|.|++||+|..|
T Consensus        21 C~~~~yG~~C~~---~C~~~~d~~~~~~Cd~~--G--~~~C~~Gw~G~~C   63 (63)
T smart00051       21 CDENYYGEGCNK---FCRPRDDFFGHYTCDEN--G--NKGCLEGWMGPYC   63 (63)
T ss_pred             CCCCCcCCccCC---EeCcCccccCCccCCcC--C--CEecCCCCcCCCC
Confidence            343444999963   5643 224567788532  3  6789999999887

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=91.82  E-value=0.24  Score=35.37  Aligned_cols=36  Identities=22%  Similarity=0.546  Sum_probs=26.2

Q ss_pred             CCCcccCCCCCCC--CCCCCCCeEeeCCCCceEEeCCCCccC
Q psy11297         24 SPNLRLEESPCLS--HPCQNGATCQDEEDGLFECLCSPEFTG   63 (132)
Q Consensus        24 g~~C~~~~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~G   63 (132)
                      +..|+ +.++|..  ++|.  ..|.+.. |+|.|.|+.||+.
T Consensus       181 ~~~C~-~~~~C~~~~~~c~--~~C~~~~-g~~~c~c~~g~~~  218 (224)
T cd01475         181 GKICV-VPDLCATLSHVCQ--QVCISTP-GSYLCACTEGYAL  218 (224)
T ss_pred             cccCc-CchhhcCCCCCcc--ceEEcCC-CCEEeECCCCccC
Confidence            55665 5667864  4565  5799887 5699999999974

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG1225|consensus

Probab=90.99  E-value=0.59  Score=37.94  Aligned_cols=45  Identities=29%  Similarity=0.742  Sum_probs=33.0

Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC
Q psy11297         18 VQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      ||..|.|.+|.+  -.|... |.+++.|++   +  .|.|+++|.|..|+...
T Consensus       269 C~~Gf~G~dC~e--~~Cp~~-cs~~g~~~~---g--~CiC~~g~~G~dCs~~~  313 (525)
T KOG1225|consen  269 CPPGFTGDDCDE--LVCPVD-CSGGGVCVD---G--ECICNPGYSGKDCSIRR  313 (525)
T ss_pred             CCCCCcCCCCCc--ccCCcc-cCCCceecC---C--EeecCCCcccccccccc
Confidence            666777888875  357665 777676663   2  89999999999997543

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=90.67  E-value=0.22  Score=25.41  Aligned_cols=18  Identities=28%  Similarity=1.005  Sum_probs=14.4

Q ss_pred             eEeeCCCCceEEeCCCCcc
Q psy11297         44 TCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        44 ~C~~~~~~~~~C~C~~g~~   62 (132)
                      .|++.. ++|+|.|+.||.
T Consensus        11 ~C~~~~-g~~~C~C~~Gy~   28 (36)
T PF14670_consen   11 ICVNTP-GSYRCSCPPGYK   28 (36)
T ss_dssp             EEEEET-TSEEEE-STTEE
T ss_pred             CCccCC-CceEeECCCCCE
Confidence            788887 469999999985

...

>KOG1214|consensus

Probab=87.47  E-value=1.9  Score=37.10  Aligned_cols=31  Identities=26%  Similarity=0.639  Sum_probs=22.3

Q ss_pred             CeEeeCCCCceEEeCCCCccC--CcccccCCCCC
Q psy11297         43 ATCQDEEDGLFECLCSPEFTG--YLCHTRAPPKL   74 (132)
Q Consensus        43 g~C~~~~~~~~~C~C~~g~~G--~~C~~~~~~c~   74 (132)
                      ..|+....++|+|.|.+||.|  ..|. +.++|.
T Consensus       799 a~c~~hGgs~y~C~CLPGfsGDG~~c~-dvDeC~  831 (1289)
T KOG1214|consen  799 ARCVHHGGSTYSCACLPGFSGDGHQCT-DVDECS  831 (1289)
T ss_pred             eEEEecCCceEEEeecCCccCCccccc-cccccC
Confidence            366666656899999999986  4554 347775

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=86.51  E-value=0.88  Score=24.47  Aligned_cols=23  Identities=35%  Similarity=0.791  Sum_probs=17.9

Q ss_pred             CeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         43 ATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        43 g~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      ..|...   +..|.|.++++|++|++
T Consensus        11 ~~C~~~---~G~C~C~~~~~G~~C~~   33 (49)
T PF00053_consen   11 QTCDPS---TGQCVCKPGTTGPRCDQ   33 (49)
T ss_dssp             SSEEET---CEEESBSTTEESTTS-E
T ss_pred             CcccCC---CCEEeccccccCCcCcC
Confidence            467664   26999999999999986

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=84.85  E-value=1.1  Score=24.31  Aligned_cols=16  Identities=38%  Similarity=0.831  Sum_probs=14.3

Q ss_pred             eEEeCCCCccCCcccc
Q psy11297         53 FECLCSPEFTGYLCHT   68 (132)
Q Consensus        53 ~~C~C~~g~~G~~C~~   68 (132)
                      -.|.|.+++.|..|++
T Consensus        19 G~C~C~~~~~G~~C~~   34 (50)
T cd00055          19 GQCECKPNTTGRRCDR   34 (50)
T ss_pred             CEEeCCCcCCCCCCCC
Confidence            5899999999999974

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species

Probab=82.98  E-value=0.71  Score=29.33  Aligned_cols=32  Identities=25%  Similarity=0.774  Sum_probs=22.2

Q ss_pred             CCCCCCCeEeeCCC----CceEEeCCC-------------CccCCcccc
Q psy11297         37 HPCQNGATCQDEED----GLFECLCSP-------------EFTGYLCHT   68 (132)
Q Consensus        37 ~pC~ngg~C~~~~~----~~~~C~C~~-------------g~~G~~C~~   68 (132)
                      +-|.++|.|+....    .=|.|.|.+             .|.|..|+.
T Consensus        13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqK   61 (103)
T PF12955_consen   13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQK   61 (103)
T ss_pred             cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeeccccccc
Confidence            45677899997621    238999976             466777764

It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.

>KOG1226|consensus

Probab=81.90  E-value=2  Score=36.30  Aligned_cols=40  Identities=25%  Similarity=0.640  Sum_probs=22.2

Q ss_pred             CCCcccCCCCCCCC---CCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         24 SPNLRLEESPCLSH---PCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        24 g~~C~~~~~~C~~~---pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      |+.|+-+.-.|..+   .|.++|+|.=     -.|.|.+||+|..|+-
T Consensus       539 G~fCECDnfsC~r~~g~lC~g~G~C~C-----G~CvC~~GwtG~~C~C  581 (783)
T KOG1226|consen  539 GKFCECDNFSCERHKGVLCGGHGRCEC-----GRCVCNPGWTGSACNC  581 (783)
T ss_pred             eeeeeccCcccccccCcccCCCCeEeC-----CcEEcCCCCccCCCCC
Confidence            66666555555542   4555555541     2566666666665543

>KOG1836|consensus

Probab=81.47  E-value=3  Score=38.58  Aligned_cols=60  Identities=27%  Similarity=0.452  Sum_probs=40.2

Q ss_pred             CccCCeecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCC-CCceEEe-CCCCccCCcccccCC
Q psy11297         11 GCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEE-DGLFECL-CSPEFTGYLCHTRAP   71 (132)
Q Consensus        11 ~~~~~~~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~-~~~~~C~-C~~g~~G~~C~~~~~   71 (132)
                      |-.-++..+++| |..=......|.+=||.+++.|.... .....|. |+++|+|.+|+...+
T Consensus       755 G~~C~~C~~GfY-g~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~d  816 (1705)
T KOG1836|consen  755 GGQCAQCVDGFY-GLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECAD  816 (1705)
T ss_pred             CCchhhhcCCCC-CccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCC
Confidence            334444555666 33322222338888999999998654 2357899 999999999998554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
3pve_A	189	Crystal Structure Of The G2 Domain Of Agrin From Mu		1e-06

>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus Musculus Length = 189

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 80  FNGSSHIVMKTLKAYN-----KLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
           FNG S++ +K L  +      K+++E+ F      G+LLYN Q  DG GDFVSLA+ N
Sbjct: 14  FNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHN 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	1e-17
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	1e-10
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-16
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-15
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-12
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	5e-11
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-09
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-08
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	5e-13
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	6e-12
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	7e-12
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	2e-09
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	3e-11
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	6e-05
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	6e-11
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	6e-11
3v64_A	191	Low-density lipoprotein receptor-related protein;	1e-10
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	4e-10
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-09
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-08
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	5e-10
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	2e-06
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	6e-10
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	8e-10
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-09
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	9e-08
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	9e-10
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	9e-10
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	2e-09
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	7e-09
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	4e-06
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	1e-08
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-08
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-04
2vh0_B	134	Activated factor XA light chain; serine protease,	2e-08
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-07
2vh0_B	134	Activated factor XA light chain; serine protease,	2e-04
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	2e-08
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	9e-08
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	1e-07
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-07
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-06
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-04
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-07
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-07
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-06
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-04
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	5e-04
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	3e-06
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	3e-06
1aut_L	114	Activated protein C; serine proteinase, plasma cal	5e-06
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	2e-05
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-04
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-04
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	6e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	2e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	9e-04
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	3e-04
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	5e-04

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 76.6 bits (188), Expect = 1e-17
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 13  LSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPE-FTGYLCHTRAP 71
           +S ++  + Q         + C    C N   C  + DG F C CS   F+G LC+    
Sbjct: 167 ISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGT 225

Query: 72  PKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
             ++       +         +     + I F T + + +L+    +  G GD++ L I 
Sbjct: 226 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIH 284

Query: 132 N 132
            
Sbjct: 285 Q 285

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 80  FNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
              SS++ + TL+AY  + +  +FKT   DG++LYN        DF+ + +V 
Sbjct: 11  KTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS---GDGNDFIVVELVK 60

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 13   LSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTRAP 71
            +S ++  + Q         + C    C N   C  + DG F C CS   F+G LC+    
Sbjct: 999  ISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGT 1057

Query: 72   PKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
              ++       +         +     + I F T + + +L+    +  G GD++ L I 
Sbjct: 1058 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIH 1116

Query: 132  N 132
             
Sbjct: 1117 Q 1117

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 33  PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLK 92
                 C NG  C   +D    C CS   TG+     +  K      F GS +      +
Sbjct: 192 EGEGGVCLNGGVCSVVDDQ-AVCDCS--RTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQ 248

Query: 93  AY---NKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
                +   I + FKT + +G++L+  ++     D+V+LA+ N
Sbjct: 249 NPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKN 287

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 61.0 bits (147), Expect = 4e-12
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 31  ESPCLSHPCQNGATCQDEEDGLFECLCSP-EFTGYLCHTRAPPKLYDTPAFNGSSHIVMK 89
             PCLS+PC+N   C+D  +  + C CS   + G  C   A        +++GS  + ++
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNR-YVCDCSGTGYLGRSCEREATV-----LSYDGSMFMKIQ 672

Query: 90  TLKAYN--KLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
                +     + + F++ +  GIL+        + D + L +  
Sbjct: 673 LPVVMHTEAEDVSLRFRSQRAYGILMATTSR--DSADTLRLELDA 715

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 57.9 bits (139), Expect = 5e-11
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKA 93
            L     NG    D         C         +  A P  + T     SS++ + TL+A
Sbjct: 801 HLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTK----SSYVALATLQA 856

Query: 94  YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
           Y  + +  +FKT   DG++LYN        DF+ + +V 
Sbjct: 857 YTSMHLFFQFKTTSLDGLILYNS---GDGNDFIVVELVK 892

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 81  NGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
                       A  +  +  + KT    G++LY      G  DF+ L +  
Sbjct: 6   AEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDE--GFCDFLELILTR 55

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 12/111 (10%)

Query: 34  CLSHPCQNGATCQDEE-DGLFECLCSPEFTGYLCHTRAPPKLYDTPAFN-GSSHIVMKTL 91
           CL          + E      +     +  G +          D   F    S I +   
Sbjct: 379 CLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKW 438

Query: 92  KAYNKLSIEIEFKTNKNDGILLYNQQNLDGT----------GDFVSLAIVN 132
            A    SI  +F+T + +G++L++                  DF ++ +++
Sbjct: 439 NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLD 489

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score = 61.8 bits (150), Expect = 5e-13
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 77  TPAFNGSSHIVMKTLKAYN-----KLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
              FNG S++ +K L  +      K+++E+ F      G+LLYN Q  DG GDFVSLA+ 
Sbjct: 11  LADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALH 70

Query: 132 N 132
           N
Sbjct: 71  N 71

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 60.5 bits (146), Expect = 6e-12
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 8/109 (7%)

Query: 24  SPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGS 83
             NLR E +      C             +  L SP++ G         +   T +F   
Sbjct: 341 LRNLRPEVNVKKYSGCLKDIEISRTP---YNILSSPDYVGVTKGC--SLENVYTVSFPKP 395

Query: 84  SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             + +  +       I + F T    GI+L       G   + ++ +  
Sbjct: 396 GFVELAAVSIDVGTEINLSFSTRNESGIILLGSG---GGQAYYAIFLNK 441

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 60.1 bits (145), Expect = 7e-12
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 9/101 (8%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIV--MKTL 91
           C+     +            E  C                      F+G  + +      
Sbjct: 167 CMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGT-----IQFDGEGYALVSRPIR 221

Query: 92  KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
              N  ++  +F+T  +  +L+Y         DF+S+ + +
Sbjct: 222 WYPNISTVMFKFRTFSSSALLMYLATR--DLKDFMSVELSD 260

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 80  FNGSSHIVMK-TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             G      +  +K  +  +I +  KT   D +L Y         DF+++ +  
Sbjct: 15  SGGDCVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGSA--KFIDFLAIEMRK 66

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)

Query: 32  SPCLSH--PCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVM- 88
           +P      P      C  E +       S +F                   + +SHI + 
Sbjct: 8   TPAFPFPVPTMVHGPCVAESEPAL-LTGSKQF-----------------GLSRNSHIAIA 49

Query: 89  -KTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
               K  N+L+IE+E +T    G+L Y  +      DF ++ + N
Sbjct: 50  FDDTKVKNRLTIELEVRTEAESGLLFYMARI--NHADFATVQLRN 92

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 83  SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
                +   K    L +E EF+T +  G+LL          D + + +++
Sbjct: 220 GFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS---SQKMDGMGIEMID 266

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 57.5 bits (138), Expect = 6e-11
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 18/104 (17%)

Query: 34  CLSHPC----QNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK 89
           C         Q+  TC+D         C P         ++   LY    F+G+  I ++
Sbjct: 6   CDGRGGLKLSQDMDTCEDI------LPCVP-----FSVAKSVKSLYLGRMFSGTPVIRLR 54

Query: 90  TLKA-YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             +    +L  E +F+T   +GILL+   +      ++ LA+  
Sbjct: 55  FKRLQPTRLVAEFDFRTFDPEGILLFAGGH--QDSTWIVLALRA 96

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score = 56.4 bits (136), Expect = 6e-11
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 58  SPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQ 117
           +  F G             T + +   +    + KA      E+  KT    G++L++ +
Sbjct: 14  AIAFDGRTY---MEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGK 70

Query: 118 NLDGTGDFVSLAIVN 132
            L    D+++LAIV+
Sbjct: 71  GL-ERSDYIALAIVD 84

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 14/71 (19%)

Query: 75  YDTPAFNGSSHI-------------VMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDG 121
            +T AF+G ++I              +   KA      E+  +T    G++L+  +  + 
Sbjct: 2   LETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAER 61

Query: 122 TGDFVSLAIVN 132
             D+++LAIV+
Sbjct: 62  -ADYMALAIVD 71

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 53.0 bits (128), Expect = 4e-10
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
          C+S+PCQN ATC D+    F+C+C P + G  C  
Sbjct: 48 CVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCEV 81

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C S PC +   C D+ +  F+C C   FTG+LC  
Sbjct: 86  CASSPCLHNGRCLDKINE-FQCECPTGFTGHLCQV 119

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
            ++PC++   C +     FEC C   +TG  C  
Sbjct: 10 LGANPCEHAGKCINTLGS-FECQCLQGYTGPRCEI 43

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 54.6 bits (131), Expect = 5e-10
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 56  LCSPEFTGYLCHTRAPPKLYDTPA---FNGSSHIVMKTLKA--YNKLSIEIEFKTNKNDG 110
           L  PE    LC     P           + +SH+V+   ++    +L +++  +T  + G
Sbjct: 3   LAQPE----LCAVDTAPGYVAGAHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSG 58

Query: 111 ILLYNQQNLDGTGDFVSLAIVN 132
           ++ Y         D+ +L +  
Sbjct: 59  LIYYVAHQ--NQMDYATLQLQE 78

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 50  DGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKND 109
           +G       P     +       +       +G + +V +  K    L I +EF+T   +
Sbjct: 175 NGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKN 234

Query: 110 GILLYNQQNLDGTGDFVSLAIVN 132
           G+LL          D + L IV+
Sbjct: 235 GVLLGIS---SAKVDAIGLEIVD 254

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
          C S+PC NG +C+D+ +  +EC C   F G  C
Sbjct: 6  CESNPCLNGGSCKDDINS-YECWCPFGFEGKNC 37

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 52.4 bits (126), Expect = 8e-10
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR 69
           C   PC+NG  C D     + C C  EF G  C  +
Sbjct: 100 CEVEPCKNGGICTDLVAN-YSCECPGEFMGRNCQYK 134

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 33 PCLSHPCQNGATCQDE-EDGLFECLCSPEFTGYLCHT 68
           C  +PC+NG  C     DG F C C   FT   C +
Sbjct: 2  ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSS 38

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 47.0 bits (112), Expect = 9e-08
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 23 ASPNLRLEESPCLSHPCQNGATCQDEEDGL------FECLCSPEFTGYLCHT 68
          +         PC  +PC NG TC+  E         + C C   F G  C  
Sbjct: 44 SDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH 95

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 76  DTPAFNGSSHIVMK--TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
              +++GS  + ++   +       + + F++ +  GIL+        + D + L +  
Sbjct: 6   TVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSR--DSADTLRLELDA 62

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 78  PAFNGSSHIVMKTLK---AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             F GS +      +     +   I + FKT + +G++L+  ++     D+V+LA+ N
Sbjct: 8   ATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKN 61

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 71  PPKLY--DTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSL 128
           PP ++  + P     + +     K   K S   E +T   +G++ Y   N     D+  L
Sbjct: 1   PPAVHLSNGPGQEPIAVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDTN--PKDDWFML 57

Query: 129 AIVN 132
            + +
Sbjct: 58  GLRD 61

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 49.6 bits (119), Expect = 7e-09
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C S PCQNG +C+D+    + C C P F G  C T
Sbjct: 49 QCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCET 83

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 3/38 (7%)

Query: 34  CLSHPCQNG---ATCQDEEDGLFECLCSPEFTGYLCHT 68
            L    +NG     C D       C C   ++      
Sbjct: 88  QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 68  TRAPPKLYDTPAFNGSSHIVMK-TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFV 126
              PP ++ +         VM   L    K S   E +T   +G++ Y   N     D+ 
Sbjct: 10  AHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTN--PKDDWF 67

Query: 127 SLAIVN 132
            L + +
Sbjct: 68  MLGLRD 73

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C  +PC NG  C+D+ +  +EC C   F G  C  
Sbjct: 50 QCEPNPCLNGGLCKDDINS-YECWCQVGFEGKNCEL 84

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 2/35 (5%), Positives = 7/35 (20%), Gaps = 1/35 (2%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
            + +           +     C C+  +       
Sbjct: 89  NIKNGRCKQFCKTGADSK-VLCSCTTGYRLAPDQK 122

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C + PCQN   C+D     + C C   F G  C  
Sbjct: 44 QCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCEL 78

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C          C +E++    C C+  +T      
Sbjct: 84  CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGK 117

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 1/35 (2%)

Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           L   C       +E   +FE         +  + 
Sbjct: 7  HLERECMEETCSYEEAREVFED-SDKTNEFWNKYK 40

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 80  FNGSSHIVMKTLKAYNKL-----SIEIEFKTNKNDGILLYNQQNLDGTG---DFVSLAIV 131
           F+    +          L     +IE+E +T+   G+LL+    +   G   DF+SL + 
Sbjct: 10  FHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQ 69

Query: 132 N 132
           +
Sbjct: 70  D 70

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 45.9 bits (109), Expect = 9e-08
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 32 SPCLSHPCQNGATCQD-EEDGLFECLCSPEFTGYLC 66
            C    C NG TCQ       F C C   F G  C
Sbjct: 49 KSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 80  FNGSSHIVMK----TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             G   I  K       +     + I F T + + +L+    +  G GD++ L I  
Sbjct: 10  SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIHQ 65

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C + PCQN   C+D     + C C   F G  C  
Sbjct: 44 QCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCEL 78

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C          C +E++    C C+  +T      
Sbjct: 84  CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGK 117

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 1/34 (2%)

Query: 33  PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
           P   +PC      + +     +   S        
Sbjct: 121 PTGPYPCGKQTLERRKRSV-AQATSSSGEAPDSI 153

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
          PC+S PC +  +CQD   G + C CSP + G  C
Sbjct: 7  PCISQPCLHNGSCQDSIWG-YTCTCSPGYEGSNC 39

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 33  PCLSH-PCQNGATCQDEEDGLFECLCSPEFTGYLC 66
            C +H PC NG TC +     ++C C   ++G  C
Sbjct: 133 YCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 32  SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNG 82
             C+ HP      C +     ++CLC   + G LC           P  NG
Sbjct: 97  DKCIPHPGCVHGICNEP----WQCLCETNWGGQLCDKDLNYCGTHQPCLNG 143

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 4/42 (9%)

Query: 30  EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP 71
             + C         +C+       +C C   + G  C    P
Sbjct: 64  NRAICRQGCSPKHGSCKLP----GDCRCQYGWQGLYCDKCIP 101

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 4/39 (10%)

Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPP 72
            SH   +  + +          C   + G+ C+    P
Sbjct: 2  RGSHHHHHHGSIEGR----SAVTCDDYYYGFGCNKFCRP 36

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 9/90 (10%)

Query: 47  DEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK----TLKAYNKLSIEIE 102
             +                        ++      G   I  K       +     + I 
Sbjct: 15  SSKHHSVPIAIYRSPASLRGGHAGTTYIF----SKGGGQITYKWPPNDRPSTRADRLAIG 70

Query: 103 FKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
           F T + + +L+    +  G GD++ L I  
Sbjct: 71  FSTVQKEAVLVRVDSS-SGLGDYLELHIHQ 99

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 80  FNGSSHIVMK----TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             G   I  K       +     + I F T + + +L+    +  G GD++ L I  
Sbjct: 16  SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIHQ 71

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)

Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
            +  C    TC D     F C C   + G  C  
Sbjct: 17 PCASLCCGHGTCIDGIGS-FSCDCRSGWEGRFCQR 50

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECL-CSPEFTG 63
           CLS+PC  GA C    DG + C  C   F G
Sbjct: 5  GCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLG 36

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 31  ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           +    S  C NG TC        +C+C P   G  C  
Sbjct: 211 DKANCSTTCFNGGTCFYP----GKCICPPGLEGEQCEI 244

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 31  ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR 69
           E      PC+NG  C  +     +C CS  + G LC   
Sbjct: 243 EISKCPQPCRNGGKCIGK----SKCKCSKGYQGDLCSKP 277

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 31  ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNG 82
             P     C    TC +      +C C   + G  C+ R    L  T   + 
Sbjct: 275 SKPVCEPGCGAHGTCHEP----NKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPP 72
            L   C N   C ++     EC+C P F G  C      
Sbjct: 200 HLCTACMNNGVCHEDT---GECICPPGFMGRTCEKACEL 235

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 37.0 bits (85), Expect = 9e-04
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 34  CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLY 75
            L   C NG  C    D    CLCSP + G  C     P++ 
Sbjct: 290 KLRCSCNNGEMC----DRFQGCLCSPGWQGLQCEREGIPRMT 327

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYD 76
          PC  +PCQ+   C       ++C C+   TGY       P+++ 
Sbjct: 4  PCCYYPCQHQGICVRFGLDRYQCDCTR--TGYSGPNCTIPEIWT 45

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYD 76
          PC S+PCQN   C       ++C C+   TG+       P+   
Sbjct: 3  PCCSNPCQNRGECMSTGFDQYKCDCTR--TGFYGENCTTPEFLT 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.57
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	99.49
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.45
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.43
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	99.19
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.14
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.11
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.08
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	99.02
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	99.02
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.01
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	99.0
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.89
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.88
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	98.85
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.84
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	98.71
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	98.69
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.65
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.63
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.57
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.55
3v64_A	191	Low-density lipoprotein receptor-related protein;	98.53
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.51
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.49
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.48
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.46
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	98.43
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.43
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	98.42
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	98.42
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	98.41
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	98.4
2vh0_B	134	Activated factor XA light chain; serine protease,	98.38
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.37
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	98.36
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	98.35
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.35
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	98.32
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.3
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.29
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.29
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.24
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.22
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	98.2
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.19
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	98.18
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.16
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	98.15
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	98.15
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	98.14
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.12
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	98.11
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.1
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	98.07
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	98.07
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.04
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.03
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	98.0
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	97.95
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	97.94
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.92
2vh0_B	134	Activated factor XA light chain; serine protease,	97.91
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	97.88
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	97.87
2bou_A	143	EGF-like module containing mucin-like hormone rece	97.86
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	97.85
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.83
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	97.81
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	97.8
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.78
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.77
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	97.75
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	97.67
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	97.67
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	97.67
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	97.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.62
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	97.6
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.6
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	97.56
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.54
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.53
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	97.5
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	97.49
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	97.48
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.46
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	97.41
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	97.4
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	97.38
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	97.33
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.3
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	97.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.28
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	97.23
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.22
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.13
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	97.11
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.03
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	97.02
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	96.98
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	96.9
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.86
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	96.65
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	96.56
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	96.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.39
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	96.24
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	95.75
1szb_A	170	Mannose binding lectin-associated serine protease-	95.46
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.33
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	95.27
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.9
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.54
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.16
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	93.84
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	92.88
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	92.75
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	92.46
1nzi_A	159	Complement C1S component; calcium, innate immunity	92.05
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	90.97
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	90.68
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	88.46
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	87.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	86.15
1lr7_A	74	Follistatin, FS1; heparin-binding, cystine-rich, s	84.28
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	83.09
2wph_E	59	Coagulation factor IXA light chain; serine proteas	81.92
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	80.95

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.57  E-value=1.2e-14  Score=111.28  Aligned_cols=100  Identities=26%  Similarity=0.476  Sum_probs=77.3

Q ss_pred             CcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCC-CccCCcccccCCCCCCCCCCC-CCcceEEecccC----CceeEEE
Q psy11297         26 NLRLEESPCLSHPCQNGATCQDEEDGLFECLCSP-EFTGYLCHTRAPPKLYDTPAF-NGSSHIVMKTLK----AYNKLSI   99 (132)
Q Consensus        26 ~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~-g~~G~~C~~~~~~c~~~~~~~-~g~~~~~~~~~~----~~~~~~i   99 (132)
                      .|+...+.|.++||.|+|+|++.++ +|+|.|+. +|.|+.|+....     ...| .+++|+.+....    ......+
T Consensus       180 gC~~~~~~C~~~pC~n~g~C~~~~~-~~~C~C~~~~~~G~~C~~~~~-----~~~f~~~~~~~~~~~~~~~~~~~~~~~i  253 (410)
T 3asi_A          180 GCEGPSTTCQEDSCSNQGVCLQQWD-GFSCDCSMTSFSGPLCNDPGT-----TYIFSKGGGQITYKWPPNDRPSTRADRL  253 (410)
T ss_dssp             SCCCCSSCCCTTSSSTTCEEEECSS-SEEEECTTTSEESTTSCEECC-----EEEEEEEEEEEEEECCTTCCCCBSEEEE
T ss_pred             CCCCCCCCcccccCCCCCEecCCCC-CceEeccCCcccCCCCCCCcc-----cccccCCCceEEEecCCCCCccceeeEE
Confidence            5655567899999999999999986 59999985 999999998652     2234 466788764221    2234589


Q ss_pred             EEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297        100 EIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus       100 ~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      +|.|||..++|+|||.+.... ..||++|+|++
T Consensus       254 ~l~frT~~~~GlLl~~~~~~~-~~~~l~l~L~~  285 (410)
T 3asi_A          254 AIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQ  285 (410)
T ss_dssp             EEEEECCCSEEEEEEEEECTT-CCCEEEEEEET
T ss_pred             EEEEEeCCCCEEEEEEecCCC-CCceEEEEEeC
Confidence            999999999999999876422 47999999975

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=99.49  E-value=2.1e-14  Score=80.67  Aligned_cols=47  Identities=23%  Similarity=0.453  Sum_probs=39.2

Q ss_pred             CCCcccCCCCCCCCCCCCCCeEe-----eCCCCceEEeCCCCccCCcccccCC
Q psy11297         24 SPNLRLEESPCLSHPCQNGATCQ-----DEEDGLFECLCSPEFTGYLCHTRAP   71 (132)
Q Consensus        24 g~~C~~~~~~C~~~pC~ngg~C~-----~~~~~~~~C~C~~g~~G~~C~~~~~   71 (132)
                      |++|+.++++|+++||+|||+|.     +..+ +|+|.|++||+|.+||..+.
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~-~y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPS-RYLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CC-CEEEEECTTEESTTSCEECC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCC-CEeEeCCCCCcCCCcCccCc
Confidence            67899999999999999999995     4454 59999999999999998774

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.45  E-value=6.1e-14  Score=119.70  Aligned_cols=93  Identities=27%  Similarity=0.455  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCCC-CccCCcccccCCCCCCCCCCCCCcceEEecccC---CceeEEEEEEEEeCC
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCSP-EFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLK---AYNKLSIEIEFKTNK  107 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~~-g~~G~~C~~~~~~c~~~~~~~~g~~~~~~~~~~---~~~~~~i~~~f~t~~  107 (132)
                      ++|..+||+|||+|..... .+.|.|+. ||.|++|+.....   ..+.|.|.+|+.|+...   ......|+|.|||.+
T Consensus       191 ~~~~~~~C~ngg~C~~~~~-~~~C~C~~~g~~G~~Ce~~~~~---~~~~F~G~~~~~y~~~~~~~~~~~~~i~l~FrT~~  266 (1245)
T 3qcw_A          191 EEGEGGVCLNGGVCSVVDD-QAVCDCSRTGFRGKDCSQGKEE---YIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQ  266 (1245)
T ss_dssp             -----------------------------------------C---CEEEECSSCEEEEECTTSCEEESEEEEEEEEECSC
T ss_pred             ccCCCCCCCCCCCCccCCC-CceeECCCCCccCCccccCccc---ceeeeCCcEEEEEccccCcccccccEEEEEEEeCC
Confidence            4577789999999998774 59999986 9999999975432   56789999999987543   223568999999999


Q ss_pred             CCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297        108 NDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus       108 ~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ++|+|||.+.    ..||++|+|++
T Consensus       267 ~~GlLl~~g~----~~d~l~L~L~~  287 (1245)
T 3qcw_A          267 RNGLMLHTGK----SADYVNLALKN  287 (1245)
T ss_dssp             SCEEEEEECS----SSEEEEEEEET
T ss_pred             CCceEEEecC----CCCEEEEEEEC
Confidence            9999999976    58999999975

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.43  E-value=4.7e-13  Score=114.32  Aligned_cols=100  Identities=25%  Similarity=0.480  Sum_probs=77.4

Q ss_pred             CcccCCCCCCCCCCCCCCeEeeCCCCceEEeCC-CCccCCcccccCCCCCCCCCCC-CCcceEEecccC----CceeEEE
Q psy11297         26 NLRLEESPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTRAPPKLYDTPAF-NGSSHIVMKTLK----AYNKLSI   99 (132)
Q Consensus        26 ~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~-~g~~G~~C~~~~~~c~~~~~~~-~g~~~~~~~~~~----~~~~~~i   99 (132)
                      .|....+.|..+||.|+|+|...++ +|.|.|+ ++|+|+.|+.+...+     .| .+++++.|....    .....+|
T Consensus      1012 gC~~~~~~C~~~pC~ngG~C~~~~~-~~~C~C~~~g~~G~~C~~~~~~~-----~f~~~~~~v~y~~~~~~~~~~~~~~i 1085 (1245)
T 3qcw_A         1012 GCEGPSTTCQEDSCSNQGVCLQQWD-GFSCDCSMTSFSGPLCNDPGTTY-----IFSKGGGQITYKWPPNDRPSTRADRL 1085 (1245)
T ss_dssp             SSSCCCCCCCTTSSSSSCEEEEETT-EEEEECTTSSCBSTTSCBCCCEE-----EEEEEEEEEEEECCTTCCCCBSEEEE
T ss_pred             eeecccCceECCcCCCCCEeCCCCC-CCEEECCCCCCCCCCccCCCceE-----EEcCCCcEEEEecCCCCccccccceE
Confidence            5665567899999999999999996 5999999 699999999865322     23 445777764221    2235689


Q ss_pred             EEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297        100 EIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus       100 ~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      +|.|||++++|+|||.++... ..|||+|+|.|
T Consensus      1086 ~l~FrT~~~~g~Ll~~~s~~~-~~~~l~l~l~~ 1117 (1245)
T 3qcw_A         1086 AIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQ 1117 (1245)
T ss_dssp             EEEEEBCCSSEEEEEEEECTT-CCCEEEEEEET
T ss_pred             EEEEEEcCCCeEEEEEeccCC-CCceEEEEEEC
Confidence            999999999999999876532 47999999975

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=99.19  E-value=2.6e-11  Score=63.23  Aligned_cols=38  Identities=37%  Similarity=0.929  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      ++++|.++||.|+|+|++.. ++|+|.|++||+|.+|+.
T Consensus         2 d~d~C~~~pC~ngg~C~~~~-~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDI-NSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEET-TEEEEECCTTCCSTTSCC
T ss_pred             ccccCCCCCCCCCCEeEcCC-CceEeECCCCCcCCccCC
Confidence            57899999999999999887 469999999999999973

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.14  E-value=1.2e-10  Score=76.55  Aligned_cols=79  Identities=25%  Similarity=0.653  Sum_probs=63.4

Q ss_pred             eecCCccCCeecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCCCCCCCCCCcceE
Q psy11297          7 MKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHI   86 (132)
Q Consensus         7 ~~~~~~~~~~~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~~~~~~~~g~~~~   86 (132)
                      +...|=|.. .|+..|.|..|+.++++|..+||.++++|++.. ++|+|.|++||+|..|+.++++|. ..++.+++.++
T Consensus        22 ~~~~g~~~C-~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~-g~~~C~C~~G~~G~~C~~~~~~C~-~~~C~~~g~C~   98 (135)
T 2vj3_A           22 INTLGSFEC-QCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI-GEFQCICMPGYEGVHCEVNTDECA-SSPCLHNGRCL   98 (135)
T ss_dssp             EECSSSEEE-ECCTTEESTTSCEECCTTTTCCCCSSCEEEECS-SCEEEECCTTEESSSSCEECCTTT-TCCSTTTCEEE
T ss_pred             ECCCCCEEE-ECCCCCcCCcccccCccCCCCCCCCCCEEeCCC-CCceeeCCCCCcCCcceecCCccc-CCCcCCCCEeE
Confidence            334443333 356666699999889999999999999999987 469999999999999998898887 67888877776


Q ss_pred             Ee
Q psy11297         87 VM   88 (132)
Q Consensus        87 ~~   88 (132)
                      ..
T Consensus        99 ~~  100 (135)
T 2vj3_A           99 DK  100 (135)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.11  E-value=8.5e-11  Score=72.42  Aligned_cols=53  Identities=28%  Similarity=0.552  Sum_probs=43.7

Q ss_pred             cCCCCCCCCcc-cCCCCCCCCCCCCCCeEeeCC-CCceEEeCCCCccCCcccccCCC
Q psy11297         18 VQSSQASPNLR-LEESPCLSHPCQNGATCQDEE-DGLFECLCSPEFTGYLCHTRAPP   72 (132)
Q Consensus        18 cp~~~~g~~C~-~~~~~C~~~pC~ngg~C~~~~-~~~~~C~C~~g~~G~~C~~~~~~   72 (132)
                      |+..+.  +|+ .++++|.++||.|+|+|++.. .++|+|.|++||+|.+|+.++++
T Consensus        36 C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ide   90 (91)
T 1tpg_A           36 CNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA   90 (91)
T ss_dssp             CSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSSC
T ss_pred             CCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCcCCcCCcCCCC
Confidence            455553  897 578999999999999999864 13599999999999999987753

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.08  E-value=3.8e-10  Score=74.45  Aligned_cols=70  Identities=26%  Similarity=0.492  Sum_probs=57.8

Q ss_pred             ecCCCCCCCCccc------------CCCCCCCCCCCCCCeEee-------CCCCceEEeCCCCccCCcccccCCCCCCCC
Q psy11297         17 VVQSSQASPNLRL------------EESPCLSHPCQNGATCQD-------EEDGLFECLCSPEFTGYLCHTRAPPKLYDT   77 (132)
Q Consensus        17 ~cp~~~~g~~C~~------------~~~~C~~~pC~ngg~C~~-------~~~~~~~C~C~~g~~G~~C~~~~~~c~~~~   77 (132)
                      .|+..|.|..|+.            .+++|..+||.++++|+.       .. ++|+|.|++||.|..|+.++++|. ..
T Consensus        26 ~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~-~~~~C~C~~G~~G~~C~~~i~~C~-~~  103 (143)
T 4d90_A           26 ECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTF-IGYVCKCPRGFNGIHCQHNINECE-VE  103 (143)
T ss_dssp             ECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEE-CCEEEECCTTEESTTSCEECCTTT-TC
T ss_pred             ECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCC-CCeEeECcCCCcCCCcccCCCcCC-CC
Confidence            3666667999976            567899999999999993       33 359999999999999998999997 77


Q ss_pred             CCCCCcceEEe
Q psy11297         78 PAFNGSSHIVM   88 (132)
Q Consensus        78 ~~~~g~~~~~~   88 (132)
                      ++.+++.++..
T Consensus       104 ~C~~~~~C~~~  114 (143)
T 4d90_A          104 PCKNGGICTDL  114 (143)
T ss_dssp             CSCTTCEEEEE
T ss_pred             CCCCCCEeECC
Confidence            88887777654

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=99.02  E-value=4.7e-10  Score=62.31  Aligned_cols=41  Identities=29%  Similarity=0.650  Sum_probs=34.9

Q ss_pred             CCCCCCCC---CCCCCCeEe--eCCCCceEEeCCCCccCCcccccCC
Q psy11297         30 EESPCLSH---PCQNGATCQ--DEEDGLFECLCSPEFTGYLCHTRAP   71 (132)
Q Consensus        30 ~~~~C~~~---pC~ngg~C~--~~~~~~~~C~C~~g~~G~~C~~~~~   71 (132)
                      ++++|.++   ||+|||+|+  +.. ++|+|.|++||+|.+|+..+.
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~-~~~~C~C~~G~~G~~Ce~~~~   47 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESL-DSYTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSS-SCEEEECCTTCCSSSSCCCSC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCC-CCEEEECCCCCcCCcCCccCc
Confidence            46789887   999999999  555 469999999999999998653

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=99.02  E-value=3.3e-10  Score=60.84  Aligned_cols=38  Identities=26%  Similarity=0.515  Sum_probs=32.1

Q ss_pred             CCCCC---CCCCCCeEe--eCCCCceEEeCCCCccCCcccccCC
Q psy11297         33 PCLSH---PCQNGATCQ--DEEDGLFECLCSPEFTGYLCHTRAP   71 (132)
Q Consensus        33 ~C~~~---pC~ngg~C~--~~~~~~~~C~C~~g~~G~~C~~~~~   71 (132)
                      +|.++   ||+|+|+|+  +.. ++|+|.|++||+|.+|+.++.
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~-~~~~C~C~~G~~G~~Ce~~~~   44 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESL-DSYTCNCVIGYSGDRCQTRDL   44 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTT-SSEEEECCTTEETTTTCEECC
T ss_pred             CcccCCCCCCCCCCEEEeecCC-CCEEEEcCCCCcCCcCCcccC
Confidence            57777   999999998  444 469999999999999998663

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.01  E-value=3e-10  Score=74.54  Aligned_cols=57  Identities=26%  Similarity=0.599  Sum_probs=48.2

Q ss_pred             ecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCC
Q psy11297         17 VVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL   74 (132)
Q Consensus        17 ~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~   74 (132)
                      .|+..|.|..|+.++++|..+||.++++|++.. ++|+|.|++||+|..|+.++++|.
T Consensus        69 ~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~-g~~~C~C~~G~~G~~C~~~i~~C~  125 (135)
T 2vj3_A           69 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKI-NEFQCECPTGFTGHLCQVDLHHIL  125 (135)
T ss_dssp             ECCTTEESSSSCEECCTTTTCCSTTTCEEEECS-SCEEEECCTTEESSSSCEECC---
T ss_pred             eCCCCCcCCcceecCCcccCCCcCCCCEeECCC-CCeEEECCCCCcCCccCccCcccc
Confidence            355566699999889999999999999999987 469999999999999999998875

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=99.00  E-value=1.3e-10  Score=66.89  Aligned_cols=43  Identities=30%  Similarity=0.597  Sum_probs=36.8

Q ss_pred             CCCCCCCCCCCCCeEee-----CCCCceEEeCCCCccCCcccccCCCCC
Q psy11297         31 ESPCLSHPCQNGATCQD-----EEDGLFECLCSPEFTGYLCHTRAPPKL   74 (132)
Q Consensus        31 ~~~C~~~pC~ngg~C~~-----~~~~~~~C~C~~g~~G~~C~~~~~~c~   74 (132)
                      .++|.++||+|||+|+.     .. ++|+|.|++||+|.+|+.+++++.
T Consensus         6 c~~C~~~pC~ngG~C~~~~~~~~~-~~y~C~C~~Gf~G~~Ce~~i~~~~   53 (63)
T 1hae_A            6 CAEKEKTFCVNGGECFMVKDLSNP-SRYLCKCQPGFTGARCTENVPMKV   53 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSS-CCEEEECCTTEESTTSCEECCSSC
T ss_pred             cCCCCCCcCCCCcEEecCCccCCC-CCEEEECCCCCcCCccCcCcCccc
Confidence            46788999999999996     34 469999999999999999887764

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.89  E-value=1.3e-09  Score=58.82  Aligned_cols=39  Identities=23%  Similarity=0.402  Sum_probs=32.3

Q ss_pred             CCCCCCC---CCCCCCCeEeeCC-CCceEEeCCCCccCCccccc
Q psy11297         30 EESPCLS---HPCQNGATCQDEE-DGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        30 ~~~~C~~---~pC~ngg~C~~~~-~~~~~C~C~~g~~G~~C~~~   69 (132)
                      .+++|.+   +||.| |+|.... .++|+|.|++||+|.+|+..
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~~   44 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCcc
Confidence            4678888   99999 7999743 13699999999999999864

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.88  E-value=3.9e-10  Score=64.39  Aligned_cols=40  Identities=20%  Similarity=0.534  Sum_probs=35.2

Q ss_pred             cCCCCCCCCCCCCC--CeEeeCCCCceEEeCCCCcc-CCccccc
Q psy11297         29 LEESPCLSHPCQNG--ATCQDEEDGLFECLCSPEFT-GYLCHTR   69 (132)
Q Consensus        29 ~~~~~C~~~pC~ng--g~C~~~~~~~~~C~C~~g~~-G~~C~~~   69 (132)
                      +.+++|.++||.||  |+|++.. ++|+|.|++||+ |.+|+..
T Consensus         9 ~~~d~C~snPC~nga~gtC~~~~-g~y~C~C~~Gy~~G~~C~~~   51 (61)
T 2k2s_B            9 ETPAACSSNPCGPEAAGTCKETN-SGYICRCNQGYRISLDGTGN   51 (61)
T ss_dssp             TSCCHHHHCSSCSSSCCEEEECS-SEEEEECCTTEEEEECSSSC
T ss_pred             CCCCcCcCCCCcCCCccccccCC-CceEeECCCCCccCCCCCCC
Confidence            35788999999999  8999987 469999999999 9999753

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=98.85  E-value=5.5e-09  Score=72.87  Aligned_cols=65  Identities=22%  Similarity=0.428  Sum_probs=48.8

Q ss_pred             CccCCcccccCCCCCCCCCCCCCcceEEecccC-------------C---ceeEEEEEEEEeCCCCeEEEEeccCCCCCC
Q psy11297         60 EFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLK-------------A---YNKLSIEIEFKTNKNDGILLYNQQNLDGTG  123 (132)
Q Consensus        60 g~~G~~C~~~~~~c~~~~~~~~g~~~~~~~~~~-------------~---~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~  123 (132)
                      ++.++.|+.       ....|+|.+|+.|+...             .   ....+|+|+|||..++|+|||.+...+ ..
T Consensus         4 ~~e~~~~~~-------~~~~F~G~sy~~~~~~~~~~~~~l~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~-~~   75 (204)
T 1pz7_A            4 IIEKAAGDA-------EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLE-RS   75 (204)
T ss_dssp             ---CTTSSS-------CCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCST-TC
T ss_pred             ccccccccc-------cceeECCceeEEEcCcccccccccccccccccccceeEEEEEEEEcCCCCeEEEEeCCCCC-CC
Confidence            456667765       45778999999997542             2   247899999999999999999975322 58


Q ss_pred             CeEEEEEcC
Q psy11297        124 DFVSLAIVN  132 (132)
Q Consensus       124 d~~~l~l~~  132 (132)
                      ||++|+|++
T Consensus        76 dfl~l~L~~   84 (204)
T 1pz7_A           76 DYIALAIVD   84 (204)
T ss_dssp             CEEEEEEET
T ss_pred             CeEEEEEEC
Confidence            999999975

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.84  E-value=3.5e-09  Score=69.75  Aligned_cols=53  Identities=25%  Similarity=0.562  Sum_probs=46.4

Q ss_pred             ecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC
Q psy11297         17 VVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        17 ~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      .|+..|.|.+|+.++++|..+||.++++|++.. ++|+|.|++||+|.+|+...
T Consensus        83 ~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~-g~~~C~C~~G~~G~~c~~~~  135 (143)
T 4d90_A           83 KCPRGFNGIHCQHNINECEVEPCKNGGICTDLV-ANYSCECPGEFMGRNCQYKG  135 (143)
T ss_dssp             ECCTTEESTTSCEECCTTTTCCSCTTCEEEEET-TEEEEECCTTCBSTTSCBC-
T ss_pred             ECcCCCcCCCcccCCCcCCCCCCCCCCEeECCC-CCeEeECCCCCccCCceecC
Confidence            466667799999899999999999999999987 56999999999999998754

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=98.71  E-value=2.7e-08  Score=68.57  Aligned_cols=57  Identities=44%  Similarity=0.653  Sum_probs=45.9

Q ss_pred             CCCCCCCcceEEecccCC-----ceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         76 DTPAFNGSSHIVMKTLKA-----YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        76 ~~~~~~g~~~~~~~~~~~-----~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ..+.|.+.+|+.++....     ...++|+|+|||..++|+|||.+...++..||++|+|++
T Consensus        10 ~~~~F~g~syl~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~~d~l~l~L~~   71 (189)
T 3pve_A           10 FLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHN   71 (189)
T ss_dssp             CCEEEESSCEEEECCGGGC-------CEEEEEEEESSSCEEEEEEESCC-CCSCEEEEEEET
T ss_pred             eeeEECCCceEEEcCcccccccccceEEEEEEEEeCCCCEEEEEecCCCCCCCCeEEEEEEC
Confidence            457899999999997753     346899999999999999999997544468999999975

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=98.69  E-value=2.3e-08  Score=76.69  Aligned_cols=80  Identities=19%  Similarity=0.299  Sum_probs=50.7

Q ss_pred             CCCCCCCCCCCeEeeCCCCceEEeCCCC-ccCCcccccCCCCCCCCCCCCCcceEEeccc-CCceeEEEEEEEEeCCCCe
Q psy11297         33 PCLSHPCQNGATCQDEEDGLFECLCSPE-FTGYLCHTRAPPKLYDTPAFNGSSHIVMKTL-KAYNKLSIEIEFKTNKNDG  110 (132)
Q Consensus        33 ~C~~~pC~ngg~C~~~~~~~~~C~C~~g-~~G~~C~~~~~~c~~~~~~~~g~~~~~~~~~-~~~~~~~i~~~f~t~~~~g  110 (132)
                      .|..++|+++++|++....    .+... |              ....|.+.+|+.+... ......+|+|+|||..++|
T Consensus        15 ~~~~~~C~~~~~C~p~~~~----~~~~~~~--------------~~~~F~g~~~~~~~f~~~~~~~~~is~~FrT~~~~G   76 (422)
T 1h30_A           15 SQDMDTCEDILPCVPFSVA----KSVKSLY--------------LGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPEG   76 (422)
T ss_dssp             ETTTTEEEECCCSSCBCCC----EETTEEE--------------CCC-----CCEEEECCBSSCCCCEEEEEEEECCSSE
T ss_pred             ccccCcCCCCCccCCcccc----cCcccce--------------eeeEECCCceEEEEccCCCCCceEEEEEEEeCCCCe
Confidence            3556777777788765422    12221 1              2345666666665321 1255789999999999999


Q ss_pred             EEEEeccCCCCCCCeEEEEEcC
Q psy11297        111 ILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus       111 ~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      +|||.+...  ..||++|+|++
T Consensus        77 lLly~~~~~--~~df~~l~L~~   96 (422)
T 1h30_A           77 ILLFAGGHQ--DSTWIVLALRA   96 (422)
T ss_dssp             EEEEEESCT--TSEEEEEEEET
T ss_pred             EEEEECCCC--CCcEEEEEEEC
Confidence            999999742  37999999975

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.65  E-value=1.2e-08  Score=56.57  Aligned_cols=35  Identities=20%  Similarity=0.544  Sum_probs=29.9

Q ss_pred             CCCCCCCCCeEe--eCCCCceEEeCCCCccCCcccccC
Q psy11297         35 LSHPCQNGATCQ--DEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        35 ~~~pC~ngg~C~--~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      .++||+|||+|+  +.. ++|+|.|++||+|.+|+..+
T Consensus        10 ~~~pC~nGG~C~~~~~~-~~~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           10 HDGYCLHDGVCMYIEAL-DKYACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             TCCEECTTCEEEEETTT-TEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCCeEEeeecCC-CCEEEecCCCCcCCCCCcCC
Confidence            368999999998  444 46999999999999999765

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.63  E-value=2e-08  Score=66.38  Aligned_cols=44  Identities=36%  Similarity=0.881  Sum_probs=38.3

Q ss_pred             cCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCC
Q psy11297         29 LEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPK   73 (132)
Q Consensus        29 ~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c   73 (132)
                      .++++|.++||.|+|+|++.. ++|+|.|++||+|..|+.++++|
T Consensus        45 ~did~C~~~pC~n~g~C~~~~-g~y~C~C~~G~~G~~C~~~~~~c   88 (142)
T 2c4f_L           45 SDGDQCASSPCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQ   88 (142)
T ss_dssp             TTCCGGGGCCCCTTCEEEEET-TEEEEECCTTEESTTSCEEGGGC
T ss_pred             CccCcCcCCCcCCCCEEeCCC-CCEEeeCCCCccCCccccCcccc
Confidence            367899999999999999987 46999999999999999865543

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.57  E-value=3.4e-08  Score=72.91  Aligned_cols=44  Identities=34%  Similarity=0.755  Sum_probs=29.3

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCC
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL   74 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~   74 (132)
                      ++++|.++||.|+++|.+... +|+|.|++||.|..|+.++++|.
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~-~~~C~C~~g~~g~~C~~~~~eC~   47 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIW-GYTCTCSPGYEGSNCELAKNECH   47 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSS-SCCCCCSSSCCSSSSCCCSSSCC
T ss_pred             cCCcCCCCCCCCCCEeECCCC-CeEEECCCCCcCCccccCcccCC
Confidence            456677777777777776653 47777777777777776666665

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.55  E-value=6.7e-08  Score=64.23  Aligned_cols=47  Identities=28%  Similarity=0.718  Sum_probs=35.9

Q ss_pred             CCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCC
Q psy11297         25 PNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL   74 (132)
Q Consensus        25 ~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~   74 (132)
                      ..| .++++|.++||.|+++|++... +|+|.|++||+|..|+.. ++|.
T Consensus        43 ~~c-~dideC~~~pC~n~g~C~~~~~-~y~C~C~~G~~G~~C~~~-deC~   89 (146)
T 1x7a_L           43 KQY-VDGDQCEPNPCLNGGLCKDDIN-SYECWCQVGFEGKNCELD-ATCN   89 (146)
T ss_dssp             --------CCSSCSSCTTCEEEECSS-CEEEECCSSEESTTTCEE-CCTT
T ss_pred             ccC-CCcCcCCCCCCCCCCEeECCCC-CEEEecCCCCcCCcCCCC-cccc
Confidence            345 4788999999999999999874 599999999999999865 6665

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=98.53  E-value=1.7e-07  Score=64.73  Aligned_cols=55  Identities=29%  Similarity=0.507  Sum_probs=44.2

Q ss_pred             CCCCCCcceEEeccc-------------CCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         77 TPAFNGSSHIVMKTL-------------KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        77 ~~~~~g~~~~~~~~~-------------~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ...|.|.+|++|+..             +.....+|+|+|||..++|+|||.+...+ ..||++|+|++
T Consensus         4 ~~~F~G~sy~~y~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~-~~d~l~l~L~~   71 (191)
T 3v64_A            4 TLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAE-RADYMALAIVD   71 (191)
T ss_dssp             EEEEESSCCEEEECSCCCHHHHCCCCCCEEESEEEEEEEEECSCSSEEEEEESCCST-TCCEEEEEEET
T ss_pred             cceecCceeEEEccccccccccccccccccccceEEEEEEEeCCCCeEEEEeCCCCC-CCcEEEEEEEC
Confidence            356889999998753             23457899999999999999999987432 58999999975

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.51  E-value=4e-08  Score=66.75  Aligned_cols=50  Identities=22%  Similarity=0.598  Sum_probs=32.8

Q ss_pred             cCCCCCCCCcccCCCCCCC-CCCCCCCeEeeCCCCceEEeCCCCccCCccc
Q psy11297         18 VQSSQASPNLRLEESPCLS-HPCQNGATCQDEEDGLFECLCSPEFTGYLCH   67 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~   67 (132)
                      |+..+.|..|+.++++|.. +||.++|+|++...++|+|.|++||+|.+|+
T Consensus       118 C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~~Ce  168 (169)
T 2vj2_A          118 CETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE  168 (169)
T ss_dssp             ECTTEETTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCSTTSC
T ss_pred             CCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCcCcC
Confidence            3444457777766667764 6777777777642234777777777777775

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.49  E-value=1.6e-07  Score=56.42  Aligned_cols=56  Identities=20%  Similarity=0.529  Sum_probs=43.1

Q ss_pred             cCCCCCCC-CCCCCCCeEeeCCCCceEEeCCCCcc--CCcccccCCCCCCCCCCCCCcceEEe
Q psy11297         29 LEESPCLS-HPCQNGATCQDEEDGLFECLCSPEFT--GYLCHTRAPPKLYDTPAFNGSSHIVM   88 (132)
Q Consensus        29 ~~~~~C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~--G~~C~~~~~~c~~~~~~~~g~~~~~~   88 (132)
                      +++++|.. +||.| ++|++.. ++|+|.|++||.  |..| +++++|....++.++ .++..
T Consensus         3 ~dideC~~~~~C~~-g~C~n~~-g~y~C~C~~Gy~~~g~~C-~dideC~~~~~C~~~-~C~n~   61 (82)
T 1emn_A            3 VDMDECKEPDVCKH-GQCINTD-GSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKNV   61 (82)
T ss_dssp             CCCCSSSSTTSCSS-SEECCCS-SCCCEECCTTEEEETTEE-EECCGGGTCCTTSSS-CEEEC
T ss_pred             CccccCCCCCCcCC-CEEEecC-CCEEEECCCCeECCCCcc-CCcccccCCCCCCCC-EeECC
Confidence            36789986 89986 7999987 469999999997  8999 568888655667654 45543

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.48  E-value=5.1e-08  Score=53.72  Aligned_cols=34  Identities=26%  Similarity=0.625  Sum_probs=28.1

Q ss_pred             CCCCCCCCeEeeC---CCCceEEeCCCCccCCccccc
Q psy11297         36 SHPCQNGATCQDE---EDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        36 ~~pC~ngg~C~~~---~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      ++||+|||+|+..   ..++|+|.|+.||+|.+|+..
T Consensus        13 ~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A           13 AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (52)
T ss_dssp             HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred             CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence            5699999999962   223599999999999999864

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.46  E-value=1.9e-08  Score=69.95  Aligned_cols=48  Identities=25%  Similarity=0.546  Sum_probs=2.5

Q ss_pred             CCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC-CCCC
Q psy11297         25 PNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA-PPKL   74 (132)
Q Consensus        25 ~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~-~~c~   74 (132)
                      ..| .++++|.++||.|+|+|++... +|+|.|++||+|..|+..+ ++|.
T Consensus        37 ~~c-~dideC~~~pC~ngg~C~n~~g-~y~C~C~~Gf~G~~Ce~~i~deC~   85 (195)
T 1nfu_B           37 NKY-KDGDQCETSPCQNQGKCKDGLG-EYTCTCLEGFEGKNCELFTRKLCS   85 (195)
T ss_dssp             ----------------------------------------------CCGGG
T ss_pred             ccC-CCCcccCCCCCCCCCEeECCCC-CeeEeCCCCceecccccccccccc
Confidence            345 4789999999999999999874 5999999999999999877 6675

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=98.43  E-value=4.7e-07  Score=61.84  Aligned_cols=53  Identities=26%  Similarity=0.439  Sum_probs=43.4

Q ss_pred             CCCCCCCcceEEecccC---CceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         76 DTPAFNGSSHIVMKTLK---AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        76 ~~~~~~g~~~~~~~~~~---~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ....|.|.+|+.++...   .....+|+|+|||..++|+|||.+.    ..||++|+|++
T Consensus         6 ~~~~F~G~sy~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~g~----~~d~l~l~L~~   61 (184)
T 2h0b_A            6 YIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGK----SADYVNLALKN   61 (184)
T ss_dssp             CEEEEESSEEEEEECSSSCEEESEEEEEEEEEESCSCEEEEEECC----TTEEEEEEEET
T ss_pred             ceeEECCceEEEEccccCccccCccEEEEEEEeCCCCEEEEEeCC----CCCEEEEEEEC
Confidence            44678999999997543   2246799999999999999999865    58999999975

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.43  E-value=7e-08  Score=74.34  Aligned_cols=105  Identities=25%  Similarity=0.460  Sum_probs=60.6

Q ss_pred             cCCCCCCCCcccC------CCCCC-CCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCCCCCCCC-CCcceEEec
Q psy11297         18 VQSSQASPNLRLE------ESPCL-SHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAF-NGSSHIVMK   89 (132)
Q Consensus        18 cp~~~~g~~C~~~------~~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~~~~~~~-~g~~~~~~~   89 (132)
                      |+..+.|.+|+..      ...|. .-+|.|+++|....    .|.|++||+|.+|+......  ..+.+ ....++.++
T Consensus       267 C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~----~C~C~~G~~G~~Ce~~~~~~--~~~~~~~~~~~~~c~  340 (423)
T 2gy5_A          267 CATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ----GCLCSPGWQGLQCEREGIPR--MTPKIVDLPDHIEVN  340 (423)
T ss_dssp             CCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTT----EEECCTTCBSTTSCBCSSCC--CCCEECSCCSBCCEE
T ss_pred             eCCCcccccccCccCCCCcCCcccccccCCCCCEecCCC----ceECCCCCcCCCCccCccCC--cCcceecCCCeEEeC
Confidence            4445557777641      11232 12799999998652    49999999999999864321  11221 122222221


Q ss_pred             c--------cCCc-eeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         90 T--------LKAY-NKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        90 ~--------~~~~-~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      .        .... ....+++.|  .+.+|++||.++...  .||++|+|++
T Consensus       341 ~g~~g~~C~~~~~~~~~~~~~~~--~~~~G~cl~~~~~~~--~d~ial~l~~  388 (423)
T 2gy5_A          341 SGKFNPICKASGWPLPTNEEMTL--VKPDGTVLHPKDFNH--TDHFSVAIFT  388 (423)
T ss_dssp             SEEECCEEEEECTTCCCGGGEEE--ECTTSCEECCSEEEE--CSSCEEEECC
T ss_pred             CCccCCcccccCCcCCCCceEEE--ECCCeEEEeCCCcCc--ccceeeeEEe
Confidence            1        0000 001122222  578999999986533  7999999975

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=98.42  E-value=1.2e-07  Score=75.54  Aligned_cols=40  Identities=35%  Similarity=0.799  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCeEeeCCCCceEEeCC-CCccCCcccccC
Q psy11297         31 ESPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTRA   70 (132)
Q Consensus        31 ~~~C~~~pC~ngg~C~~~~~~~~~C~C~-~g~~G~~C~~~~   70 (132)
                      +++|.++||+|||+|++...++|+|.|+ +||+|.+|+...
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~   41 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPE   41 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEEC
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCCch
Confidence            4789999999999999643246999999 999999999853

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=98.42  E-value=9.6e-08  Score=75.81  Aligned_cols=39  Identities=26%  Similarity=0.699  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCCCCeEee-CCCCceEEeCC-CCccCCcccccC
Q psy11297         31 ESPCLSHPCQNGATCQD-EEDGLFECLCS-PEFTGYLCHTRA   70 (132)
Q Consensus        31 ~~~C~~~pC~ngg~C~~-~~~~~~~C~C~-~g~~G~~C~~~~   70 (132)
                      +++|.++||+|||+|.+ .. ++|+|.|+ .||+|.+||...
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~-~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGL-DRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETT-TEEEEECTTSSEETTTTCEEC
T ss_pred             CCcCCCCCCCCCCCcCCCCC-CceEeeCCCCCcCCCCCCCCc
Confidence            47899999999999999 76 46999999 999999999865

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=98.41  E-value=4.2e-07  Score=62.20  Aligned_cols=55  Identities=15%  Similarity=0.329  Sum_probs=43.7

Q ss_pred             CCCCCCCcceEEec--ccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         76 DTPAFNGSSHIVMK--TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        76 ~~~~~~g~~~~~~~--~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ....|+|.+|+.+.  ........+|+|+|||..++|+|||.+...  ..||++|+|++
T Consensus         6 ~~~~F~G~sy~~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~--~~d~l~L~L~~   62 (182)
T 2r16_A            6 TVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRD--SADTLRLELDA   62 (182)
T ss_dssp             CEEEEESSCCEEEEEEEEEEESEEEEEEEEECSCSSEEEEEEECSS--SCCEEEEEEET
T ss_pred             ccEEECCCceEEEECCCcCCccceEEEEEEEECCCCEEEEEeCCCC--CCCEEEEEEEC
Confidence            45678889998764  333455789999999999999999998632  48999999975

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=98.40  E-value=8e-07  Score=61.45  Aligned_cols=56  Identities=21%  Similarity=0.362  Sum_probs=43.9

Q ss_pred             CCCCCCcceEEecccC-----CceeEEEEEEEEeCCCCeEEEEeccC---CCCCCCeEEEEEcC
Q psy11297         77 TPAFNGSSHIVMKTLK-----AYNKLSIEIEFKTNKNDGILLYNQQN---LDGTGDFVSLAIVN  132 (132)
Q Consensus        77 ~~~~~g~~~~~~~~~~-----~~~~~~i~~~f~t~~~~g~ll~~~~~---~~~~~d~~~l~l~~  132 (132)
                      ...|.+.+|+.++...     .....+|+|+|||..++|+|||.+..   .....||++|+|++
T Consensus         7 ~~~F~G~syl~lp~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~~~~~~~~~~d~l~l~L~~   70 (195)
T 3sh4_A            7 GAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQD   70 (195)
T ss_dssp             EEEEEEEEEEEECGGGGCCCSTTCCEEEEEEEEECCSSEEEEEECCCTTCTTSTTCEEEEEEET
T ss_pred             cCEECCCEEEEEccccccccccccceEEEEEEEeCCCCcEEEEecccccCCCCCCcEEEEEEeC
Confidence            3568899999998642     12357999999999999999999853   12257999999975

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.38  E-value=3.9e-08  Score=64.43  Aligned_cols=48  Identities=25%  Similarity=0.546  Sum_probs=2.6

Q ss_pred             CCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC-CCCC
Q psy11297         25 PNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA-PPKL   74 (132)
Q Consensus        25 ~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~-~~c~   74 (132)
                      ..| .++++|.++||.|+|+|++... +|+|.|++||+|..|+..+ ++|.
T Consensus        37 ~~c-~d~d~C~~~pC~n~g~C~~~~~-~y~C~C~~G~~G~~C~~~i~d~C~   85 (134)
T 2vh0_B           37 NKY-KDGDQCETSPCQNQGKCKDGLG-EYTCTCLEGFEGKNCELFTRKLCS   85 (134)
T ss_dssp             ----------------------------------------------CCGGG
T ss_pred             ccC-CCcCcCCCCCCCCcCCcccCCC-CEEeeCCCCccCCccccCCCCccc
Confidence            345 3678999999999999999874 5999999999999999877 6675

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.37  E-value=7.2e-07  Score=71.72  Aligned_cols=75  Identities=17%  Similarity=0.348  Sum_probs=58.4

Q ss_pred             cCCeecCCCCCC--CCcccCCCCCCCCC--CCCCC---eEeeCCCCceEEe-CCCCccCCccc--------------ccC
Q psy11297         13 LSASVVQSSQAS--PNLRLEESPCLSHP--CQNGA---TCQDEEDGLFECL-CSPEFTGYLCH--------------TRA   70 (132)
Q Consensus        13 ~~~~~cp~~~~g--~~C~~~~~~C~~~p--C~ngg---~C~~~~~~~~~C~-C~~g~~G~~C~--------------~~~   70 (132)
                      |....||..|.|  ..|+ ++++|..+|  |.+++   +|++... +|+|. |++||+|..|+              +++
T Consensus        25 y~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~g-sY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~di  102 (634)
T 1yo8_A           25 WSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQP-GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE  102 (634)
T ss_dssp             EEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSS-SEEECCCCTTEEECCCEESSSHHHHSCCCCEEEC
T ss_pred             eECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccC-ceecccCCCCcccCccccccccccccCCCccccc
Confidence            443356777767  7996 889999988  99999   9999874 59999 99999998875              567


Q ss_pred             CCCCC-CCCCCCCcceEEec
Q psy11297         71 PPKLY-DTPAFNGSSHIVMK   89 (132)
Q Consensus        71 ~~c~~-~~~~~~g~~~~~~~   89 (132)
                      ++|.. ..+|.++..++...
T Consensus       103 deC~~~~~pC~~~~~Cvnt~  122 (634)
T 1yo8_A          103 NPCKDKTHNCHKHAECIYLG  122 (634)
T ss_dssp             CTTTTTCCCCCTTEEEEECC
T ss_pred             ccccCCCcccccCccccccc
Confidence            88863 25788777777654

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=98.36  E-value=1.1e-06  Score=67.01  Aligned_cols=52  Identities=35%  Similarity=0.657  Sum_probs=44.8

Q ss_pred             CCCC-CcceEEecccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         78 PAFN-GSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        78 ~~~~-g~~~~~~~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ..|. +.+|++++.++....++|+|+|||..++|+|||.+..   ..||++|+|++
T Consensus         8 v~F~~~~Syl~~p~~~~~~~~~is~~frT~~~~GlLly~~~~---~~dfi~l~L~~   60 (410)
T 3asi_A            8 VTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGD---GNDFIVVELVK   60 (410)
T ss_dssp             EEECSTTCEEEESCCCCSSCEEEEEEEECSCSCEEEEEEEBS---TTCEEEEEEET
T ss_pred             cEeCCCCeeEEeCCCCCCceEEEEEEEEeCCCCeEEEEeCCC---CCCEEEEEEEC
Confidence            4564 6799999988887889999999999999999998752   58999999975

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=98.35  E-value=1.1e-07  Score=53.56  Aligned_cols=33  Identities=27%  Similarity=0.641  Sum_probs=27.1

Q ss_pred             CCCCCCeEeeC---CCCceEEeCCCCccCCcccccC
Q psy11297         38 PCQNGATCQDE---EDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        38 pC~ngg~C~~~---~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      ||+|||+|...   ..+.|.|.|++||+|.+||...
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~~   50 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE   50 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEEC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcccC
Confidence            99999999832   2235999999999999999754

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.35  E-value=2e-07  Score=59.34  Aligned_cols=44  Identities=27%  Similarity=0.650  Sum_probs=35.2

Q ss_pred             CCCCCCCCC--------CCCCCeEeeCCCCceEEeCCCCccCCcccccCC--CCC
Q psy11297         30 EESPCLSHP--------CQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP--PKL   74 (132)
Q Consensus        30 ~~~~C~~~p--------C~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~--~c~   74 (132)
                      ++++|..+|        |.++|+|++... +|+|.|++||+|..|+...+  +|.
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~-~y~C~C~~G~~G~~C~~~~~~~~C~   58 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGIG-SFSCDCRSGWEGRFCQREVSFLNCS   58 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCSS-CCCEEECTTEESTTSCEECCSSSSS
T ss_pred             ecccccCCCccccccccCCCcCCCCCCCC-CcEeeCCCCCcCCCcCcCCcCCcCc
Confidence            567888888        999999998874 59999999999999987654  553

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=98.32  E-value=1e-06  Score=59.66  Aligned_cols=50  Identities=20%  Similarity=0.339  Sum_probs=39.2

Q ss_pred             CCCc--ceEEecccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         80 FNGS--SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        80 ~~g~--~~~~~~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      |.+.  +|+.|+.... ...+|+|+|||..++|+|||.+...  ..||++|+|+|
T Consensus        10 F~g~s~~~l~f~~~~~-~~~~is~~FrT~~~~GlLly~~~~~--~~df~~l~L~~   61 (170)
T 1d2s_A           10 PGQEPIAVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDTNP--KDDWFMLGLRD   61 (170)
T ss_dssp             TCCSCSEEEEEEGGGC-CCCEEEEEEEESCSSEEEEEEEEET--TTEEEEEEEET
T ss_pred             CCCCceEEEEecCCCC-CceEEEEEEEeCCCCEEEEEecCCC--CCCEEEEEEeC
Confidence            4444  4677775554 5679999999999999999998742  37999999975

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.30  E-value=3.7e-09  Score=76.64  Aligned_cols=49  Identities=6%  Similarity=-0.002  Sum_probs=41.9

Q ss_pred             CCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCC
Q psy11297         23 ASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPK   73 (132)
Q Consensus        23 ~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c   73 (132)
                      .|.+|+.. ++|++.||.|+|+|++... +|+|.|+.||+|.+|+.++++|
T Consensus        92 ~G~~c~~~-~eC~s~pC~ngG~C~~~~~-sy~C~C~~Gf~G~~Ce~~~d~C  140 (267)
T 4fbr_A           92 LGARDKQN-IVAVSIKSNDGGKTLTGTT-TYNGEGPIGFKSEVTDGDTYSV  140 (267)
T ss_dssp             CCCCSSCC-EEEEEEECSSTTSEEEEEE-EETTSCCEEEEEEECCCCEEEE
T ss_pred             ccCccccc-cccCCCCCCCCCEEecCCc-cEEeeCCCCccccCCCCCcccc
Confidence            47777654 4799999999999999874 6999999999999999988774

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.29  E-value=1.7e-07  Score=64.31  Aligned_cols=78  Identities=13%  Similarity=0.189  Sum_probs=56.4

Q ss_pred             eecCCccCCeecCCCCCCC---CcccCCCCCC----CCCCCCCCeEeeCCC----CceEEeCCCCccCCcccccCCCCCC
Q psy11297          7 MKRMGCLSASVVQSSQASP---NLRLEESPCL----SHPCQNGATCQDEED----GLFECLCSPEFTGYLCHTRAPPKLY   75 (132)
Q Consensus         7 ~~~~~~~~~~~cp~~~~g~---~C~~~~~~C~----~~pC~ngg~C~~~~~----~~~~C~C~~g~~G~~C~~~~~~c~~   75 (132)
                      ....|-|... |+..|.|.   .|+ ++++|.    .+||.++++|++...    ++|+|.|++||+|..++-.+++|. 
T Consensus        19 ~~~~g~~~C~-C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~C~~d~C~-   95 (186)
T 1z1y_A           19 VQMSNHFXCM-CNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ-   95 (186)
T ss_dssp             EECSSCEEEE-ECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETTEEEEGGGT-
T ss_pred             ECCCCCeEeE-CCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCCCCCCCcCc-
Confidence            3344444443 45555466   786 679999    789999999999872    469999999999986544467786 


Q ss_pred             CCCCCCCcceEE
Q psy11297         76 DTPAFNGSSHIV   87 (132)
Q Consensus        76 ~~~~~~g~~~~~   87 (132)
                      ..++.+++.++.
T Consensus        96 ~~~C~~~g~C~~  107 (186)
T 1z1y_A           96 YXNCGESGECIV  107 (186)
T ss_dssp             TCCCCTTEEEEE
T ss_pred             CCCCCCCCEEee
Confidence            567877777763

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.29  E-value=3e-07  Score=60.52  Aligned_cols=61  Identities=15%  Similarity=0.388  Sum_probs=46.1

Q ss_pred             CCcccCCCCCCCC---CCCCCCeEeeCCCCceEEeCCCCccCC------------cccccCCCCCC-CCCCCCCcceEEe
Q psy11297         25 PNLRLEESPCLSH---PCQNGATCQDEEDGLFECLCSPEFTGY------------LCHTRAPPKLY-DTPAFNGSSHIVM   88 (132)
Q Consensus        25 ~~C~~~~~~C~~~---pC~ngg~C~~~~~~~~~C~C~~g~~G~------------~C~~~~~~c~~-~~~~~~g~~~~~~   88 (132)
                      ..|+ ++++|...   ||.++++|++... +|+|.|++||.|.            .|+ ++++|.. ..++.++..++..
T Consensus        39 ~~C~-dideC~~~~~~~C~~~~~C~n~~g-~y~C~C~~Gy~g~~~~~~~~~~~~~~C~-dideC~~~~~~C~~~~~C~n~  115 (143)
T 2bou_A           39 ETCD-DINECATLSKVSCGKFSDCWNTEG-SYDCVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNT  115 (143)
T ss_dssp             CCCE-ECCGGGC----CCCTTEEEEECSS-CEEEEECTTEEETTCCSCBSSGGGCCEE-ECCHHHHTCCCCCTTSEEEEC
T ss_pred             CcCC-ccccccCCCCCCCCCCCEEEcCCC-CeEeECCCCcccCcCccccccCCCCCcC-CccCccCcCCCCCCCCEEECC
Confidence            6884 78999875   9999999999874 6999999999987            454 5677752 3567666666654

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.24  E-value=7.4e-07  Score=53.43  Aligned_cols=56  Identities=23%  Similarity=0.478  Sum_probs=42.4

Q ss_pred             EeecCCccCCeecCCCCC--CCCcccCCCCCC-CCCCCCCCeEeeCCCCceEEeCCCCccCCc
Q psy11297          6 RMKRMGCLSASVVQSSQA--SPNLRLEESPCL-SHPCQNGATCQDEEDGLFECLCSPEFTGYL   65 (132)
Q Consensus         6 ~~~~~~~~~~~~cp~~~~--g~~C~~~~~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~   65 (132)
                      +++..|-|.. .|+..|.  |..| +++++|. .+||.| ++|++.. ++|+|.|++||.|..
T Consensus        19 C~n~~g~y~C-~C~~Gy~~~g~~C-~dideC~~~~~C~~-~~C~n~~-g~y~C~C~~G~~g~~   77 (82)
T 1emn_A           19 CINTDGSYRC-ECPFGYILAGNEC-VDTDECSVGNPCGN-GTCKNVI-GGFECTCEEGFEPGP   77 (82)
T ss_dssp             ECCCSSCCCE-ECCTTEEEETTEE-EECCGGGTCCTTSS-SCEEECS-SSEEECCSSSSCCCS
T ss_pred             EEecCCCEEE-ECCCCeECCCCcc-CCcccccCCCCCCC-CEeECCC-CCEEeECCCCeEeCC
Confidence            4455565665 4666664  8889 4789997 789987 5999987 469999999998743

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.22  E-value=1.6e-06  Score=69.73  Aligned_cols=56  Identities=32%  Similarity=0.681  Sum_probs=44.5

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEE-eCCCCccC--CcccccCCCCCCCCC--CCCCc---ceEE
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFEC-LCSPEFTG--YLCHTRAPPKLYDTP--AFNGS---SHIV   87 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C-~C~~g~~G--~~C~~~~~~c~~~~~--~~~g~---~~~~   87 (132)
                      ++++|.++||.++++|++...++|+| .|++||+|  ..|+ ++++|. ..+  |.++.   .++.
T Consensus         2 DIDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~-~~p~~C~~gg~~~~CvN   65 (634)
T 1yo8_A            2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECA-LVPDICFSTSKVPRCVN   65 (634)
T ss_dssp             --CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTT-TSCCCSCCCSSSCCEEE
T ss_pred             cccccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-cccccc-CCCCcccCCccccceee
Confidence            57889999999999999987545999 99999998  8997 788896 445  77765   5554

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=98.20  E-value=6.3e-07  Score=59.93  Aligned_cols=41  Identities=22%  Similarity=0.566  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCC
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL   74 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~   74 (132)
                      ++|.++||.++|+|++..+ +|+|.|++||.|..||... +|.
T Consensus       120 ~~c~~~~C~~~g~C~~~~~-~~~c~C~~g~~G~~Ce~~~-~c~  160 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETIG-NYTCSCYPGFYGPECEYVR-DDD  160 (162)
T ss_dssp             CCCCTTGGGGSEEEEECSS-SEEEEECTTEESTTSCEEC-C--
T ss_pred             CCCcCCCCCCCCEEecCCC-CceEeCCCCCcCcccccCc-ccC
Confidence            5799999999999999985 5999999999999999864 563

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.19  E-value=4.4e-07  Score=62.25  Aligned_cols=69  Identities=10%  Similarity=0.135  Sum_probs=52.5

Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCCCCeEe----eCCCCceEEeCCCCccC-----Cccccc-CCCCCCCCCC-CCCcceE
Q psy11297         18 VQSSQASPNLRLEESPCLSHPCQNGATCQ----DEEDGLFECLCSPEFTG-----YLCHTR-APPKLYDTPA-FNGSSHI   86 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~pC~ngg~C~----~~~~~~~~C~C~~g~~G-----~~C~~~-~~~c~~~~~~-~~g~~~~   86 (132)
                      |+..|.|..++-.+++|..+||.++++|+    +.. ++|+|.|++||.|     ..|+.. .++|.  .++ .+++.++
T Consensus        78 C~~G~~g~~~~C~~d~C~~~~C~~~g~C~~~~~~~~-g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~--~~C~~~~~~C~  154 (186)
T 1z1y_A           78 CIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEI-QSAGCSCAIGXVPNPEDEXXCTXTGETACQ--LXCNTDNEVCX  154 (186)
T ss_dssp             ECTTEEEETTEEEEGGGTTCCCCTTEEEEEEEETTE-EEEEEEECTEEEEETTTTTEEEEEECCCCC--CCCCTTTEEEE
T ss_pred             CCCCCccCCCCCCCCcCcCCCCCCCCEEeeCCcCCC-CCceEECCCCCcccCCCCCcceEcCCCccc--ccccccCccee
Confidence            55555577665447899999999999999    444 4699999999998     889864 67785  477 6777666


Q ss_pred             Eec
Q psy11297         87 VMK   89 (132)
Q Consensus        87 ~~~   89 (132)
                      ...
T Consensus       155 n~~  157 (186)
T 1z1y_A          155 NVE  157 (186)
T ss_dssp             EET
T ss_pred             cCC
Confidence            543

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=98.18  E-value=3e-06  Score=59.73  Aligned_cols=54  Identities=22%  Similarity=0.340  Sum_probs=38.9

Q ss_pred             CCCC-CcceEEecccC----CceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         78 PAFN-GSSHIVMKTLK----AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        78 ~~~~-g~~~~~~~~~~----~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ..|. +.+|+.|...+    .....+|+|.|||..++|+|||.+.... ..||++|+|++
T Consensus        13 ~~F~~g~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~~-~~dfi~LeL~~   71 (220)
T 2r1b_A           13 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQ   71 (220)
T ss_dssp             EEEEEEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEESTT-CCCEEEEEEET
T ss_pred             EEECCCCeEEEEECCCCCcccccCcEEEEEEEeCCCCEEEEEecCCCC-CCCeEEEEEEC
Confidence            4564 45788764322    2335589999999999999999665322 58999999975

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.16  E-value=1.5e-06  Score=53.20  Aligned_cols=60  Identities=13%  Similarity=0.258  Sum_probs=47.8

Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccc-ccCCCCCCCCCCCCCcceEEec
Q psy11297         18 VQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH-TRAPPKLYDTPAFNGSSHIVMK   89 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~-~~~~~c~~~~~~~~g~~~~~~~   89 (132)
                      |+..+.|..|+  +++|...||.|+      . ++|+|.|++||+  .|+ .++++|. +.++.+++.++...
T Consensus         6 C~~g~~g~~c~--~~~c~~~pC~n~------~-~~y~C~C~~G~~--~C~~~~~~~C~-~~pC~ngg~C~~~~   66 (91)
T 1tpg_A            6 CRDEKTQMIYQ--QHQSWLRPVLRS------N-RVEYCWCNSGRA--QCHSVPVKSCS-EPRCFNGGTCQQAL   66 (91)
T ss_dssp             CBCSSSCCBCC--SSCEEEEECSSS------S-CEEEEECSSSCC--BCCEECEEECS-SCCSCTTCEEEEES
T ss_pred             CCCCCcCCeEC--CCcccCCccccC------C-CCcEeECCCCCc--ccccCcCCccc-CCCCCCCCEeecCC
Confidence            45556688884  688999998876      2 469999999998  898 5788887 78899998888754

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*

Probab=98.15  E-value=4.2e-06  Score=58.20  Aligned_cols=46  Identities=22%  Similarity=0.399  Sum_probs=37.3

Q ss_pred             ceEEecccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         84 SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        84 ~~~~~~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      +|+.++.... ...+|+|.|||..++|+|||.+...  ..||++|+|+|
T Consensus        28 ~y~~~~~~~~-~~~~is~~frT~~~~GlLly~~~~~--~~d~~~l~L~~   73 (205)
T 1f5f_A           28 AVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDTNP--KDDWFMLGLRD   73 (205)
T ss_dssp             EEEEEEGGGC-CCCEEEEEEEESCSSEEEEEEEEET--TTEEEEEEEET
T ss_pred             EEEEECCCCC-CceEEEEEEEeCCCCEEEEEeCCCC--CCCEEEEEEEC
Confidence            7788875443 3479999999999999999998742  26999999975

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=98.15  E-value=1e-06  Score=53.18  Aligned_cols=42  Identities=26%  Similarity=0.612  Sum_probs=35.1

Q ss_pred             CCCCCCCCC--CCCCCeEeeCCCCceEEeCCCCcc-----CCcccccCCCCC
Q psy11297         30 EESPCLSHP--CQNGATCQDEEDGLFECLCSPEFT-----GYLCHTRAPPKL   74 (132)
Q Consensus        30 ~~~~C~~~p--C~ngg~C~~~~~~~~~C~C~~g~~-----G~~C~~~~~~c~   74 (132)
                      ++++|+.+|  |.++ +|++.. ++|+|.|++||.     |..|+ ++++|.
T Consensus         2 dideC~~~~~~C~~g-~C~n~~-g~y~C~C~~Gy~~~~~~g~~C~-dideC~   50 (86)
T 1lmj_A            2 DIDECRISPDLCGRG-QCVNTP-GDFECKCDEGYESGFMMMKNCM-DIDECQ   50 (86)
T ss_dssp             CCCTTTTCSSTTTTS-CEEEET-TEEEECCCSSEEECTTTSSSEE-ECCHHH
T ss_pred             ccccccCCCCCCCCC-EEECCC-CCEEeeCCCCcCccCCCCCccC-Cccccc
Confidence            678998876  9765 999988 469999999997     78896 788885

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=98.14  E-value=5.1e-06  Score=58.83  Aligned_cols=53  Identities=21%  Similarity=0.284  Sum_probs=39.2

Q ss_pred             CCCCCcceEEecccC----CceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         78 PAFNGSSHIVMKTLK----AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        78 ~~~~g~~~~~~~~~~----~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ..|.+ +|+.|...+    .....+|+|.|||..++|+|||.++... ..||++|+|++
T Consensus        43 f~~~g-s~i~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~-~~dfi~L~L~~   99 (226)
T 2r1d_A           43 FSKGG-GQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQ   99 (226)
T ss_dssp             EEEEE-EEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEECTT-CCCEEEEEEET
T ss_pred             EecCC-cEEEEECCccccccccccEEEEEEEeCCCCEEEEEecCCCC-CCCEEEEEEEC
Confidence            44566 888765332    2345689999999999999999764322 58999999975

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.12  E-value=5.7e-07  Score=54.51  Aligned_cols=47  Identities=23%  Similarity=0.559  Sum_probs=38.4

Q ss_pred             CCCCCCCCC--CCCCCeEeeCCCCceEEeCCCCcc----CCcccccCCCCCCCCCCC
Q psy11297         30 EESPCLSHP--CQNGATCQDEEDGLFECLCSPEFT----GYLCHTRAPPKLYDTPAF   80 (132)
Q Consensus        30 ~~~~C~~~p--C~ngg~C~~~~~~~~~C~C~~g~~----G~~C~~~~~~c~~~~~~~   80 (132)
                      ++++|+.+|  | ++++|++.. ++|+|.|++||.    |..|+ ++++|. ..++.
T Consensus         2 dideC~~~~~~C-~~~~C~n~~-g~y~C~C~~G~~~~~~g~~C~-dideC~-~~~C~   54 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIP-GDFECECPEGYRYNLKSKSCE-DIDECS-ENMCA   54 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBT-TBCCCSSSTTCEEETTTTEEE-CCCHHH-HSCCS
T ss_pred             ccccccCCCCCC-CCCEeECCC-CCEEEECCCCceECCCCCcCC-CcCeeC-CCCCC
Confidence            578999888  8 789999987 469999999998    88995 788875 44553

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=98.11  E-value=8.4e-06  Score=55.47  Aligned_cols=54  Identities=24%  Similarity=0.380  Sum_probs=39.1

Q ss_pred             CCCC-CcceEEecccC----CceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         78 PAFN-GSSHIVMKTLK----AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        78 ~~~~-g~~~~~~~~~~----~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ..|. +.+|+.+....    .....+|+|+|||..++|+|||..+.. +..||++|+|++
T Consensus         7 ~~F~~~~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~-~~~dfi~l~L~~   65 (178)
T 3bod_A            7 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-GLGDYLELHIHQ   65 (178)
T ss_dssp             EEEEEEEEEEEEECCTTSCCCBSEEEEEEEEECCCSSEEEEEEEESS-SSCCEEEEEEET
T ss_pred             EEECCCCcEEEEECCCcCCCCccccEEEEEEEECCCCEEEEEEcCCC-CCCCEEEEEEEC
Confidence            3453 45787764332    234678999999999999999975322 258999999975

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.10  E-value=9.2e-08  Score=69.34  Aligned_cols=79  Identities=10%  Similarity=0.011  Sum_probs=62.0

Q ss_pred             eeEeecCCccCCeecCC--CCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCC------CCC
Q psy11297          4 LVRMKRMGCLSASVVQS--SQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPP------KLY   75 (132)
Q Consensus         4 ~~~~~~~~~~~~~~cp~--~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~------c~~   75 (132)
                      .-.+++.|-+++--.|+  -++|.++++.+..+.. +|.|+|+|++... +|+|.|++||+|.+|+..+++      |. 
T Consensus         4 ~~~~n~~Gg~s~~~~pgg~~~~g~~~~~n~~~~~~-~c~ngG~C~~g~~-~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~-   80 (267)
T 4fbr_A            4 YLVQNQWGGSQATWNPGGLWLIGARDKQNVVALDI-KSDDGGKTLKGTM-TYNGEGPIGFRGTLSSANNYTVENQWGGT-   80 (267)
T ss_dssp             EEEEEECSSTTSCCEEEEEEECCCCSSCCEEEEEE-ECSSTTSEEEEEE-EETTSCCEEEEEEECSTTEEEEEEESSST-
T ss_pred             eeEeecCCcccCCcCCCCceeeccccccccccCCC-CcCCCCeecCCCC-CeEEeCCCCcccccccccccccccccCcC-
Confidence            34578888888877776  1348888877766665 8899999999874 699999999999999998887      44 


Q ss_pred             CCCCCCCcce
Q psy11297         76 DTPAFNGSSH   85 (132)
Q Consensus        76 ~~~~~~g~~~   85 (132)
                      +.|+.+++.+
T Consensus        81 s~pC~nggtc   90 (267)
T 4fbr_A           81 SAPWQPGGVW   90 (267)
T ss_dssp             TSCEEEEEEE
T ss_pred             CCcccCCCee
Confidence            6666666554

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=98.07  E-value=1.8e-05  Score=59.97  Aligned_cols=49  Identities=33%  Similarity=0.569  Sum_probs=38.2

Q ss_pred             CcceEEec--ccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         82 GSSHIVMK--TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        82 g~~~~~~~--~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ..+|+.++  ........+|+|+|||..++|+|||.+...  ..||++|+|++
T Consensus        42 ~~s~~~~~~~~~~~~~~~~is~~frT~~~~GlLly~~~~~--~~dfi~l~L~~   92 (394)
T 1dyk_A           42 RNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARIN--HADFATVQLRN   92 (394)
T ss_dssp             TTCEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEECTT--SSSEEEEEEET
T ss_pred             CCcEEEEEcCccccccceEEEEEEEeCCCCeEEEEcCCCC--CCceEEEEEEC
Confidence            35666654  334456889999999999999999998642  47999999975

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=98.07  E-value=1.4e-05  Score=60.28  Aligned_cols=50  Identities=18%  Similarity=0.423  Sum_probs=40.1

Q ss_pred             CCcceEEeccc--CCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         81 NGSSHIVMKTL--KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        81 ~g~~~~~~~~~--~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      .+.+|+.++..  .....++|+|+|||..++|+|||.+...  ..||++|+|++
T Consensus        27 ~~~S~~~~~~~~~~~~~~~~is~~frT~~~~GlLly~~~~~--~~d~~~l~L~~   78 (383)
T 2jd4_A           27 SQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAHQN--QMDYATLQLQE   78 (383)
T ss_dssp             STTCEEEEECCSCCCSSEEEEEEEEEECCSCEEEEEEECTT--SSSEEEEEEET
T ss_pred             CCCeeEEEeCCchhcccceEEEEEEEcCCCCeEEEEeCCCC--CCcEEEEEEEC
Confidence            34789998743  3345789999999999999999997642  37999999975

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.04  E-value=1.1e-06  Score=53.16  Aligned_cols=61  Identities=15%  Similarity=0.311  Sum_probs=45.3

Q ss_pred             ecCCccCCeecCCCCC----CCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCC
Q psy11297          8 KRMGCLSASVVQSSQA----SPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL   74 (132)
Q Consensus         8 ~~~~~~~~~~cp~~~~----g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~   74 (132)
                      +..|-|... |+..|.    |..|+ ++++|..+||.  ++|++.. ++|+|.|+ ++.|..++.+...|.
T Consensus        20 n~~g~y~C~-C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~-g~y~C~C~-g~~G~~~~~~~~~C~   84 (87)
T 1z6c_A           20 NIPGDFECE-CPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYP-GGYTCYCD-GKKGFKLAQDQKSCE   84 (87)
T ss_dssp             CBTTBCCCS-SSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCS-SSCCEECC-SSSCCBCCTTSSSCB
T ss_pred             CCCCCEEEE-CCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccC-CCEEEECC-CCcCCcccCCCCcce
Confidence            334444443 444444    78895 88999999997  6999987 46999998 899999887766653

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.03  E-value=4e-06  Score=55.23  Aligned_cols=63  Identities=16%  Similarity=0.306  Sum_probs=46.3

Q ss_pred             eecCCccCCeecCCCCCCCCcccCCCCCCCCCCCCCC---eEeeCCCCceEEeCCCCcc----CCcccccC
Q psy11297          7 MKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGA---TCQDEEDGLFECLCSPEFT----GYLCHTRA   70 (132)
Q Consensus         7 ~~~~~~~~~~~cp~~~~g~~C~~~~~~C~~~pC~ngg---~C~~~~~~~~~C~C~~g~~----G~~C~~~~   70 (132)
                      ....|-|.. .|+..|.|.+|+..++.|...+|.+++   +|++...++|+|.|++||.    |..|+...
T Consensus        62 ~~~~g~y~C-~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~~  131 (142)
T 2c4f_L           62 KDQLQSYIC-FCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV  131 (142)
T ss_dssp             EEETTEEEE-ECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEESS
T ss_pred             eCCCCCEEe-eCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCCC
Confidence            334444443 355566699998767777766777777   9998874169999999999    99998654

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=98.00  E-value=9.9e-06  Score=61.03  Aligned_cols=53  Identities=30%  Similarity=0.444  Sum_probs=43.2

Q ss_pred             CCCCCCcceEEe--cccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         77 TPAFNGSSHIVM--KTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        77 ~~~~~g~~~~~~--~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ...|.+.+|+.+  +........+|+|+|||..++|+|||.+..   ..||++|+|++
T Consensus       200 g~~F~g~sy~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~---~~d~l~l~L~~  254 (383)
T 2jd4_A          200 GTFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSA---KVDAIGLEIVD  254 (383)
T ss_dssp             SEEEEEEEEEEEEEEEECCBSCEEEEEEEEESCSCEEEEEEECS---SSCEEEEEEET
T ss_pred             CceECCCeEEEEecCccccCCceEEEEEEEeCCCCEEEEEecCC---CCcEEEEEEEC
Confidence            356788899998  444555578999999999999999998763   57999999975

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=97.95  E-value=3.2e-06  Score=56.03  Aligned_cols=38  Identities=24%  Similarity=0.777  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      .+|.++||.+++.|.+.+. .|.|.|.+||+|..||+.+
T Consensus       120 ~~~~~~pc~~~g~C~~~~~-~~~c~C~~g~~g~~Ce~~~  157 (157)
T 1g1t_A          120 AACTNTSCSGHGECVETIN-NYTCKCDPGFSGLKCEQIV  157 (157)
T ss_dssp             CCCCTTGGGGSEEEEEETT-EEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCCCCCCEeecCCC-CeeEECCCCccCccccccC
Confidence            5788899999999999985 6999999999999999753

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=97.94  E-value=9.5e-06  Score=52.23  Aligned_cols=36  Identities=28%  Similarity=0.673  Sum_probs=29.7

Q ss_pred             CCCCCCeEeeCC--CCceEEeCCCCccCCcccccCC-CC
Q psy11297         38 PCQNGATCQDEE--DGLFECLCSPEFTGYLCHTRAP-PK   73 (132)
Q Consensus        38 pC~ngg~C~~~~--~~~~~C~C~~g~~G~~C~~~~~-~c   73 (132)
                      ||+|||+|++..  .+.++|.|+.+|+|.+|+.+++ +|
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~~~C   40 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC   40 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESSCCS
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCcCCC
Confidence            899999999863  3423999999999999999875 44

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.92  E-value=5.8e-06  Score=57.41  Aligned_cols=59  Identities=20%  Similarity=0.455  Sum_probs=30.2

Q ss_pred             ecCCccCCeecCCCCCCCCcccCC-CCCCC--CCCCCCCeEeeCCCCceEEeCCCCcc----CCcccccC
Q psy11297          8 KRMGCLSASVVQSSQASPNLRLEE-SPCLS--HPCQNGATCQDEEDGLFECLCSPEFT----GYLCHTRA   70 (132)
Q Consensus         8 ~~~~~~~~~~cp~~~~g~~C~~~~-~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~----G~~C~~~~   70 (132)
                      ...|-|... |+..|.|.+|+..+ +.|..  .+|.+  +|++.. ++|.|.|++||.    |..|+...
T Consensus        58 n~~g~y~C~-C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~-gsy~C~C~~Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B           58 DGLGEYTCT-CLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQ-NSVVCSCARGYTLADNGKACIPTG  123 (195)
T ss_dssp             ------------------------CCGGGTGGGGCSS--EEEEET-TEEEEECCTTEEECTTSSCEEESS
T ss_pred             CCCCCeeEe-CCCCceeccccccccccccCCCCCCCC--EeECCC-CCeEEECCCCceeCCCCCccccCC
Confidence            334444443 45555699998767 78987  46765  999987 569999999999    99998764

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.91  E-value=7e-06  Score=53.56  Aligned_cols=50  Identities=22%  Similarity=0.474  Sum_probs=29.5

Q ss_pred             cCCCCCCCCcccCC-CCCCC--CCCCCCCeEeeCCCCceEEeCCCCcc----CCcccccC
Q psy11297         18 VQSSQASPNLRLEE-SPCLS--HPCQNGATCQDEEDGLFECLCSPEFT----GYLCHTRA   70 (132)
Q Consensus        18 cp~~~~g~~C~~~~-~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~----G~~C~~~~   70 (132)
                      |+..|.|..|+..+ +.|..  .+|.+  +|++.. ++|+|.|++||.    |..|+...
T Consensus        67 C~~G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~-g~y~C~C~~Gy~l~~~g~~C~~~~  123 (134)
T 2vh0_B           67 CLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQ-NSVVCSCARGYTLADNGKACIPTG  123 (134)
T ss_dssp             --------------CCGGGTGGGGCSS--EEEEET-TEEEEECCTTEEECTTSSCEEESS
T ss_pred             CCCCccCCccccCCCCccccCCCCCCC--EeECCC-CCEEEECCCCcEECCCCCccCcCC
Confidence            55556699998766 78986  45765  999987 569999999999    99997643

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=97.88  E-value=5.6e-06  Score=54.63  Aligned_cols=35  Identities=37%  Similarity=0.699  Sum_probs=30.3

Q ss_pred             ccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCC
Q psy11297         28 RLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGY   64 (132)
Q Consensus        28 ~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~   64 (132)
                      ++++++|+++||.| ++|++.. ++|+|.|++||+|.
T Consensus         1 ~~dideC~~~pC~n-g~C~n~~-g~y~C~C~~G~~g~   35 (147)
T 2w86_A            1 SADIDECESSPCIN-GVCKNSP-GSFICECSSESTLD   35 (147)
T ss_dssp             CCCCCGGGGCCSBT-SEEEEET-TEEEEECCTTEEEC
T ss_pred             CCcCccCcCCCCCC-CEeECCC-CCEEeECCCCcccC
Confidence            35789999999987 5999987 57999999999875

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=97.87  E-value=4.2e-05  Score=61.00  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=40.4

Q ss_pred             CCCCCCcceEEeccc-CCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         77 TPAFNGSSHIVMKTL-KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        77 ~~~~~g~~~~~~~~~-~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ...|+|.+|+.|++. .......|+|+|||..++|+|||.++..  ..|||+|+|++
T Consensus        12 ~~~F~g~~~~~y~p~~~~~~~~~isl~FrT~~~~glLly~~~~~--~~dfl~l~L~~   66 (608)
T 2wjs_A           12 SVSSGGDCVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGSAK--FIDFLAIEMRK   66 (608)
T ss_dssp             BCC----CEEEECCCCSCTTEEEEEEEEEESCSCEEEEEEECSS--CSCEEEEEEET
T ss_pred             EEEcCCCeEEEecCCCCCcccceEEEEEecCCCceEEEEeCCCC--CCcEEEEEEEC
Confidence            356888899998742 2445788999999999999999999842  48999999975

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=97.86  E-value=5.7e-06  Score=54.28  Aligned_cols=41  Identities=22%  Similarity=0.599  Sum_probs=34.4

Q ss_pred             CcccCCCCCCC--CCCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         26 NLRLEESPCLS--HPCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        26 ~C~~~~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      .|+ ++++|..  +||.++++|++.. ++|+|.|++||.|..+..
T Consensus        92 ~C~-dideC~~~~~~C~~~~~C~n~~-g~y~C~C~~Gy~g~~~~~  134 (143)
T 2bou_A           92 TCQ-DVDECSSGQHQCDSSTVCFNTV-GSYSCRCRPGWKPRHGIP  134 (143)
T ss_dssp             CEE-ECCHHHHTCCCCCTTSEEEECS-SCEEEECCSSSCBCTTCC
T ss_pred             CcC-CccCccCcCCCCCCCCEEECCC-CCEEeeCCCCcccCCCCc
Confidence            564 7888984  8999999999987 569999999999977643

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=97.85  E-value=1.4e-05  Score=52.97  Aligned_cols=43  Identities=30%  Similarity=0.621  Sum_probs=29.4

Q ss_pred             CcccCCCCCCCCCCCCCCeEeeCC-CCce-EEeCCCCccCCcccccCC
Q psy11297         26 NLRLEESPCLSHPCQNGATCQDEE-DGLF-ECLCSPEFTGYLCHTRAP   71 (132)
Q Consensus        26 ~C~~~~~~C~~~pC~ngg~C~~~~-~~~~-~C~C~~g~~G~~C~~~~~   71 (132)
                      +|....+.|   ||+|||+|+... ...+ .|.|+.||.|.+|+.+.+
T Consensus         5 ~~~~~~~~c---pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~   49 (145)
T 2i9a_A            5 ELHQVPSNC---DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS   49 (145)
T ss_dssp             -------CC---CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESS
T ss_pred             ccccCCCCC---CCCCCCCcCCCccccCCccccCCCCCCCCceecccc
Confidence            555444556   999999998751 1236 899999999999998775

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.83  E-value=5.5e-06  Score=49.91  Aligned_cols=38  Identities=29%  Similarity=0.753  Sum_probs=32.0

Q ss_pred             CCCcccCCCCCCCCC--CCCCCeEeeCCCCceEEeCCCCccCC
Q psy11297         24 SPNLRLEESPCLSHP--CQNGATCQDEEDGLFECLCSPEFTGY   64 (132)
Q Consensus        24 g~~C~~~~~~C~~~p--C~ngg~C~~~~~~~~~C~C~~g~~G~   64 (132)
                      |..|+ ++++|..+|  |. +++|++.. ++|+|.|++||.+.
T Consensus        40 g~~C~-dideC~~~~~~C~-~~~C~n~~-g~y~C~C~~G~~~~   79 (86)
T 1lmj_A           40 MKNCM-DIDECQRDPLLCR-GGVCHNTE-GSYRCECPPGHQLS   79 (86)
T ss_dssp             SSSEE-ECCHHHHCSSTTT-TSEEEEET-TEEEEESCTTSCCC
T ss_pred             CCccC-CcccccCCCCcCC-CCEeEcCC-CCEEEECcCCcccC
Confidence            78896 889998877  65 57999987 57999999999874

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=97.81  E-value=3.3e-06  Score=57.20  Aligned_cols=61  Identities=26%  Similarity=0.585  Sum_probs=43.8

Q ss_pred             cCCCCCCCCcccCCCCCCCCC-CCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCCCCCCCCCCcceEE
Q psy11297         18 VQSSQASPNLRLEESPCLSHP-CQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIV   87 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~p-C~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~~~~~~~~g~~~~~   87 (132)
                      |+..+.|..|+    .|..+| |.|+ +|+    +.|+|.|++||+|..|+.++++|....++.+++.++.
T Consensus        87 C~~G~~G~~C~----~C~~~~~C~~g-~C~----~~~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~  148 (169)
T 2vj2_A           87 CQYGWQGLYCD----KCIPHPGCVHG-ICN----EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSN  148 (169)
T ss_dssp             ECTTEESSSSC----EECCCTTCSSE-ECS----STTCCEECTTEETTTTCEESCHHHHTCCCCTTCEEEE
T ss_pred             CCCCCCCCCcc----cCCCCCCCCCC-CcC----CCCEEeCCCCCCCCcccCCCCCCCCCCCCCCCCEEcC
Confidence            44555577775    366666 7765 887    2388999999999999888877753467777776665

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=97.80  E-value=1.8e-05  Score=64.33  Aligned_cols=61  Identities=18%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             cCCCCCCCCcc--cCCCCCCC---CCCCCCCeEeeCCCCceEEeC-CCCccCCcccccCCCCCCCCCCCCCcceE
Q psy11297         18 VQSSQASPNLR--LEESPCLS---HPCQNGATCQDEEDGLFECLC-SPEFTGYLCHTRAPPKLYDTPAFNGSSHI   86 (132)
Q Consensus        18 cp~~~~g~~C~--~~~~~C~~---~pC~ngg~C~~~~~~~~~C~C-~~g~~G~~C~~~~~~c~~~~~~~~g~~~~   86 (132)
                      |+..+.|.+|+  ...+.|..   .+|.++|+|..     .+|.| ++||+|..|+. -..|  +.+|.+++.++
T Consensus       549 C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~-----g~C~C~~~Gy~G~~Ce~-C~~C--~~~C~~~g~Cv  615 (690)
T 3fcs_B          549 CDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC-----GSCVCIQPGSYGDTCEK-CPTC--PDACTFKKECV  615 (690)
T ss_dssp             ECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET-----TEEECCSTTCBSTTSCB-CTTS--CCTTTSCCGGG
T ss_pred             CcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC-----CEEECCCCCccCCCcCc-CCCC--CCCCCCCCCcc
Confidence            33344455554  34445554   44555555532     25666 56666666654 1123  34555555554

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.78  E-value=2.2e-05  Score=57.71  Aligned_cols=49  Identities=16%  Similarity=0.410  Sum_probs=39.3

Q ss_pred             CccCCeecCCCCCCCCcccCCCCCCC---CCCCCCCeEeeCCCCceEEeCCCCccC
Q psy11297         11 GCLSASVVQSSQASPNLRLEESPCLS---HPCQNGATCQDEEDGLFECLCSPEFTG   63 (132)
Q Consensus        11 ~~~~~~~cp~~~~g~~C~~~~~~C~~---~pC~ngg~C~~~~~~~~~C~C~~g~~G   63 (132)
                      +-|.. .|+..+.|.+|+.++++|..   +||.+  +|++.. ++|.|.|++||.|
T Consensus        24 ~~~~C-~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~-g~~~C~C~~g~~~   75 (317)
T 3h5c_B           24 WGYTC-TCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQ-ESYTCSCAQGYRL   75 (317)
T ss_dssp             SSCCC-CCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCS-SSCEEECCTTEEC
T ss_pred             CCeEE-ECCCCCcCCccccCcccCCCCCCCCCcC--ccccCC-CeeEEeccccccc
Confidence            33444 35555669999989999987   89987  999987 4699999999986

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.77  E-value=4.5e-05  Score=48.24  Aligned_cols=72  Identities=21%  Similarity=0.407  Sum_probs=45.2

Q ss_pred             EeecCCccCCeecCCCCCCCCcccCC--CCCCCC--CCCCCCeEeeCCCCceEEeCCCCcc----CCcccccCCCCCCCC
Q psy11297          6 RMKRMGCLSASVVQSSQASPNLRLEE--SPCLSH--PCQNGATCQDEEDGLFECLCSPEFT----GYLCHTRAPPKLYDT   77 (132)
Q Consensus         6 ~~~~~~~~~~~~cp~~~~g~~C~~~~--~~C~~~--pC~ngg~C~~~~~~~~~C~C~~g~~----G~~C~~~~~~c~~~~   77 (132)
                      +....|-|... |+..|.|..|+..+  ++|..+  +|.+  +|++.. ++|+|.|++||+    |..|+...     ..
T Consensus        28 C~~~~~~y~C~-C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~-g~y~C~C~~G~~~~~~g~~C~~~~-----~~   98 (114)
T 1aut_L           28 CIDGIGSFSCD-CRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEV-GWRRCSCAPGYKLGDDLLQCHPAV-----KF   98 (114)
T ss_dssp             ECCCSSCCCEE-ECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECS-SSEEEECCTTEEECTTSSCEEECS-----SS
T ss_pred             CCCCCCCcEee-CCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCC-CCEEeECCCCeeECCCCCccCcCc-----cc
Confidence            33444545544 44555699998654  378753  4543  999987 469999999998    57776543     44


Q ss_pred             CCCCCcceE
Q psy11297         78 PAFNGSSHI   86 (132)
Q Consensus        78 ~~~~g~~~~   86 (132)
                      ++.+++..+
T Consensus        99 pC~~~~~~i  107 (114)
T 1aut_L           99 PCGRPWKRM  107 (114)
T ss_dssp             CTTCCC---
T ss_pred             CCCCCCccC
Confidence            555555333

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=97.75  E-value=5.7e-06  Score=54.57  Aligned_cols=46  Identities=24%  Similarity=0.582  Sum_probs=36.5

Q ss_pred             ecCCCC---CCCCcccCCCCCCCCC--CCCCCeEeeCCCCceEEeCCCCccCCc
Q psy11297         17 VVQSSQ---ASPNLRLEESPCLSHP--CQNGATCQDEEDGLFECLCSPEFTGYL   65 (132)
Q Consensus        17 ~cp~~~---~g~~C~~~~~~C~~~p--C~ngg~C~~~~~~~~~C~C~~g~~G~~   65 (132)
                      .|+..|   .|..|+ ++++|..+|  |.|+ +|++.. ++|+|.|++||+|..
T Consensus        91 ~C~~Gy~~~~g~~C~-dideC~~~~~~C~~g-~C~n~~-g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A           91 ICGKGYSRIKGTQCE-DIDECEVFPGVCKNG-LCVNTR-GSFKCQCPSGMTLDA  141 (147)
T ss_dssp             TTCTTEEEEETTEEE-ECCHHHHSTTCSSSS-EEEEET-TEEEEECCTTCCBCT
T ss_pred             cCCCccccCCCCccC-ccccccCCCCCCCCC-EEECCC-CCEEeeCCCCCccCC
Confidence            356555   488997 899998555  9975 999987 569999999998753

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=97.67  E-value=3.1e-05  Score=51.77  Aligned_cols=40  Identities=25%  Similarity=0.715  Sum_probs=33.3

Q ss_pred             CCCCCC-CCCCCCCCeEeeCCCCceEEeCCCCcc----CCcccccCCC
Q psy11297         30 EESPCL-SHPCQNGATCQDEEDGLFECLCSPEFT----GYLCHTRAPP   72 (132)
Q Consensus        30 ~~~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~----G~~C~~~~~~   72 (132)
                      ++++|+ .+||. +++|++.. ++|+|.|++||.    |..|+ ++++
T Consensus         2 dideC~~~~~C~-~~~C~n~~-gsy~C~C~~Gy~~~~~g~~C~-d~~~   46 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVNTP-GSYICDCPPDFELNPTRVGCV-DTRS   46 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEEET-TEEEEECCTTCEECTTSSBEE-CCCC
T ss_pred             ccccCCCCCCCC-CCEeECCC-CCEEEeCCCCCeECCCCCccc-CCCC
Confidence            678998 48997 68999987 579999999998    89997 4544

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=97.67  E-value=1.3e-05  Score=47.51  Aligned_cols=38  Identities=34%  Similarity=0.817  Sum_probs=28.5

Q ss_pred             CCCCC---CCCCCCCCeEeeC-CCCceEEeCCCCccCCccccc
Q psy11297         31 ESPCL---SHPCQNGATCQDE-EDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        31 ~~~C~---~~pC~ngg~C~~~-~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      .++|.   .+.|.|| +|... ..+.+.|.|++||+|.+|+..
T Consensus        37 ~~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           37 RDPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             --CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred             CCCCCccccCcCCCC-EeeeecCCCCeEEEcCCCccccccccc
Confidence            46888   7999997 99522 113589999999999999863

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=97.67  E-value=0.0001  Score=58.78  Aligned_cols=53  Identities=15%  Similarity=0.301  Sum_probs=42.2

Q ss_pred             CCCCCCcceEEecccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         77 TPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        77 ~~~~~g~~~~~~~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ...|.+.+|+.++........+++|.|||..++|+|||.+..   ..||++|+|+|
T Consensus       389 ~~~F~~~g~~~~~~~~~~~~~~i~~~FRT~~~~GlLl~~~~~---~~~~l~l~L~~  441 (608)
T 2wjs_A          389 TVSFPKPGFVELAAVSIDVGTEINLSFSTRNESGIILLGSGG---GQAYYAIFLNK  441 (608)
T ss_dssp             EEECSSSCEEEECCCCBCTTEEEEEEEEESCSSEEEEEEC------CCEEEEEEET
T ss_pred             ccccCCCCeEEecCccCCCCcEEEEEEEeCCCCeEEEEEcCC---CCceEEEEEEC
Confidence            346788899998765555568999999999999999999764   57999999975

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=97.65  E-value=1e-05  Score=51.57  Aligned_cols=42  Identities=21%  Similarity=0.517  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCCeEeeCCCCceEEeCCCCcc---CCcccccCCCCCCCCCC
Q psy11297         33 PCLSHPCQNGATCQDEEDGLFECLCSPEFT---GYLCHTRAPPKLYDTPA   79 (132)
Q Consensus        33 ~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~---G~~C~~~~~~c~~~~~~   79 (132)
                      +|...||.  ++|++.  ++|+|.|++||.   |..| +++++|....++
T Consensus        45 ~C~~~~C~--~~C~~~--~~y~C~C~~Gy~~~~g~~C-~dideC~~~~~C   89 (118)
T 1dx5_I           45 FCNQTACP--ADCDPN--TQASCECPEGYILDDGFIC-TDIDECENGGFC   89 (118)
T ss_dssp             CCCSSEEE--CEECTT--STTCEECCTTEEEETTTEE-EECCHHHHCSSC
T ss_pred             ccCCCCCC--CcccCC--CCeEeECCCCccCCCCCcc-ccccccCCCCCC
Confidence            57777776  577763  347888888877   7777 467776533555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.62  E-value=5.9e-05  Score=57.22  Aligned_cols=54  Identities=15%  Similarity=0.276  Sum_probs=34.6

Q ss_pred             EeecCCccCCeecCCCCC---CCCcccCCCCCC-CCCCCCCCeEeeCCCCceEEeCCCCccCC
Q psy11297          6 RMKRMGCLSASVVQSSQA---SPNLRLEESPCL-SHPCQNGATCQDEEDGLFECLCSPEFTGY   64 (132)
Q Consensus         6 ~~~~~~~~~~~~cp~~~~---g~~C~~~~~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~G~   64 (132)
                      +.+.+|-|... ||..|.   |..|+ ++++|. ..+|.+  +|++.. ++|.|.|.+||.+.
T Consensus        14 C~~~~~~y~C~-C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~-g~~~C~C~~g~~~~   71 (400)
T 3p5b_L           14 CNDLKIGYECL-CPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLE-GGYKCQCEEGFQLD   71 (400)
T ss_dssp             EEECSSSEEEE-CCTTEEECSSSCEE-ECCCCSTTSSCSS--CCBCCS-SSCBCCCCTTCCCC
T ss_pred             eECCCCCeEEE-CCCCCCcCCCCccc-CchhhhccCCCCC--ccCCCc-cceeeecccccccc
Confidence            45555555554 444443   67774 777886 367754  787776 45888888888764

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=97.60  E-value=0.00014  Score=55.07  Aligned_cols=52  Identities=23%  Similarity=0.369  Sum_probs=40.6

Q ss_pred             CCCCCcceEEec-ccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         78 PAFNGSSHIVMK-TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        78 ~~~~g~~~~~~~-~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ..|.+.+|+.+. ........+|+|.|||..++|+|||.+..   ..||++|+|+|
T Consensus       214 ~~F~g~gy~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~~---~~~~l~l~L~~  266 (394)
T 1dyk_A          214 TYFDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQ---KMDGMGIEMID  266 (394)
T ss_dssp             EEEEEEEEEECCSSBCCBSEEEEEEEEEESCSCEEEEEEECS---SSCEEEEEEET
T ss_pred             ceeCCCceeEEcCCcccCCceEEEEEEEeCCCCEEEEEecCC---CCCEEEEEEEC
Confidence            457778888764 23344578999999999999999998632   57999999975

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.60  E-value=9.8e-06  Score=63.01  Aligned_cols=72  Identities=21%  Similarity=0.385  Sum_probs=41.8

Q ss_pred             eeEeecCCc-cCCeecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCCCCCCCCCCCCC
Q psy11297          4 LVRMKRMGC-LSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNG   82 (132)
Q Consensus         4 ~~~~~~~~~-~~~~~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~~c~~~~~~~~g   82 (132)
                      |.|+..+.+ +....|+..+.|..|+.  +.|.. +|.| |+|+..    ++|.|++||+|..|+..  .|. . +|.++
T Consensus       366 I~Ri~~p~~~~~p~~C~~~~~g~~c~~--~~C~~-~C~n-G~C~~~----~~C~C~~G~~G~~C~~~--~C~-~-~C~~~  433 (463)
T 2wg3_C          366 LYKIVDPKRPLMPEECRATVQPAQTLT--SECSR-LCRN-GYCTPT----GKCCCSPGWEGDFCRTA--KCE-P-ACRHG  433 (463)
T ss_dssp             EEEEECTTSCSSCGGGCCCCCCCCCCC--CHHHH-HCCS-EEECTT----SCEEECTTEESTTSCEE--CC---------
T ss_pred             EEEecCcccccccccCCCCCcCCCCcc--ccccC-CCCC-CccCCC----CeECCCCCcCCCcCCcC--cCC-C-CCCCC
Confidence            345543333 45567777777888874  56876 6987 699742    58999999999999753  465 4 67676


Q ss_pred             cceEE
Q psy11297         83 SSHIV   87 (132)
Q Consensus        83 ~~~~~   87 (132)
                      +.|+.
T Consensus       434 g~C~~  438 (463)
T 2wg3_C          434 GVCVR  438 (463)
T ss_dssp             -----
T ss_pred             CEECC
Confidence            65554

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=97.56  E-value=5.6e-05  Score=50.35  Aligned_cols=37  Identities=19%  Similarity=0.591  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      .+|..++|.++|+|.+... .|.|.|.+||.|..|+..
T Consensus       120 ~~~~~~~C~~~g~C~~~~~-~~~c~C~~g~~g~~C~~~  156 (164)
T 3cfw_A          120 ASCQPWSCSGHGECVEIIN-NYTCNCDVGYYGPQCQFV  156 (164)
T ss_dssp             CCCCTTSSCSSEEEEEETT-EEEEEECTTCBSSSSCBC
T ss_pred             CCCCCCcCCCCCeecccCC-CceeeeCCCccccccccc
Confidence            4688899999999999875 699999999999999864

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.54  E-value=0.00011  Score=39.84  Aligned_cols=32  Identities=28%  Similarity=0.696  Sum_probs=25.5

Q ss_pred             cCCCCCCC----------CCCCCCCeEeeCCCCceEEeCCCCccC
Q psy11297         29 LEESPCLS----------HPCQNGATCQDEEDGLFECLCSPEFTG   63 (132)
Q Consensus        29 ~~~~~C~~----------~pC~ngg~C~~~~~~~~~C~C~~g~~G   63 (132)
                      +++++|..          .+|.  .+|++.. ++|.|.|++||.+
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~--~~C~n~~-Gsy~C~C~~Gy~~   43 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQ--HLCHNYV-GGYFCSCRPGYEL   43 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTS--SEEEEET-TEEEEECSTTCEE
T ss_pred             CccccccCcccccccccCCCCC--CEeECCC-CCeEEECCCCCeE
Confidence            46778875          6786  4999988 5799999999974

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.53  E-value=4.4e-05  Score=47.90  Aligned_cols=52  Identities=21%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             CCCCCcccCCCCCCCC--CCCCCCeEeeCCCCceEEeCCCCccC---CcccccCCCCCCCCCC
Q psy11297         22 QASPNLRLEESPCLSH--PCQNGATCQDEEDGLFECLCSPEFTG---YLCHTRAPPKLYDTPA   79 (132)
Q Consensus        22 ~~g~~C~~~~~~C~~~--pC~ngg~C~~~~~~~~~C~C~~g~~G---~~C~~~~~~c~~~~~~   79 (132)
                      +.+..|  ++++|..+  +|.  .+|++... +|+|.|++||.|   ..|+ ++++|....+|
T Consensus        22 ~~~~~C--d~neC~~~~~~C~--~~C~n~~g-~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C   78 (107)
T 2w2n_E           22 YFQGAM--GTNECLDNNGGCS--YVCNDLKI-GYECLCPDGFQLVAQRRCE-DIDECQDPDTC   78 (107)
T ss_dssp             CCSCCB--SCCGGGTGGGGCS--SEEECCSB-SCEEECCTTCEEETTTEEE-C----------
T ss_pred             cCCCCC--cCccCcCCCCCCC--CEeEeCCC-CeEEECCCCccccCCCccc-cccccCCCCCc
Confidence            346777  45677653  454  48998874 599999999998   8898 88888633444

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=97.50  E-value=0.00015  Score=39.27  Aligned_cols=36  Identities=31%  Similarity=0.724  Sum_probs=27.9

Q ss_pred             CCCC---CCCCCCCCeEe-eCCCCceEEeCCCCccCCcccc
Q psy11297         32 SPCL---SHPCQNGATCQ-DEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        32 ~~C~---~~pC~ngg~C~-~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      ++|.   .+.|.|| +|. ....+.+.|.|+.+|+|.+|+.
T Consensus        10 ~~C~~~~~~yC~nG-~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           10 NPCNAEFQNFCIHG-ECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             CTTTTTGGGTCSSS-EEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             cccCchhhCcCCCC-EEEEecCCCCeeEECCCCcccccccc
Confidence            5676   3789985 998 2222468999999999999985

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=97.49  E-value=0.00016  Score=55.29  Aligned_cols=55  Identities=15%  Similarity=0.149  Sum_probs=41.0

Q ss_pred             CCCCCCcceEEecccC----------CceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         77 TPAFNGSSHIVMKTLK----------AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        77 ~~~~~g~~~~~~~~~~----------~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ...|.+.+|+.|+...          ....++|+|.|||..++|+|||.+.. ++..||++|+|+|
T Consensus       221 g~~F~g~s~~~~~~~~~~lp~~~~~~~~~~~~is~~fRT~~~~GlLl~~~~~-~~~~d~l~l~L~~  285 (422)
T 1h30_A          221 GSFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAP-DLRAVPLSVALVD  285 (422)
T ss_dssp             SEEECSSCCEEECCCCBC--------CCBCEEEEEEEEESSSCEEEEEEEEG-GGTEEEEEEEEES
T ss_pred             CceECCCeEEEEecCccccccccccccccceEEEEEEecCCCCEEEEEecCC-CcCCCcEEEEEEc
Confidence            3467888899886321          12367999999999999999998742 1126899999975

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=97.48  E-value=7.7e-05  Score=60.63  Aligned_cols=64  Identities=14%  Similarity=0.242  Sum_probs=48.5

Q ss_pred             cCCCCCCCCcccCC--------CCCCC----CCCCCCCeEeeCCCCceEEeCC----CCccCCcccccCCCCCCC--CCC
Q psy11297         18 VQSSQASPNLRLEE--------SPCLS----HPCQNGATCQDEEDGLFECLCS----PEFTGYLCHTRAPPKLYD--TPA   79 (132)
Q Consensus        18 cp~~~~g~~C~~~~--------~~C~~----~pC~ngg~C~~~~~~~~~C~C~----~g~~G~~C~~~~~~c~~~--~~~   79 (132)
                      |+..+.|.+|+...        +.|..    .+|.++|+|+.     +.|.|+    +||+|..|+.+...|...  .+|
T Consensus       462 C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~-----g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C  536 (690)
T 3fcs_B          462 CGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC-----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMC  536 (690)
T ss_dssp             ECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS-----SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBG
T ss_pred             eCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC-----CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCC
Confidence            55666799998765        67986    45999999982     589999    999999999888777521  356


Q ss_pred             CCCcceE
Q psy11297         80 FNGSSHI   86 (132)
Q Consensus        80 ~~g~~~~   86 (132)
                      .+++.+.
T Consensus       537 ~~~G~C~  543 (690)
T 3fcs_B          537 SGHGQCS  543 (690)
T ss_dssp             GGSEEEE
T ss_pred             CCCCEec
Confidence            5555443

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.46  E-value=5.8e-05  Score=49.88  Aligned_cols=59  Identities=15%  Similarity=0.401  Sum_probs=42.3

Q ss_pred             eecCCccCCeecCCCCCCCCcccCCCCCCCC--CCCCCCeE-eeCCCCceEEeCCCCcc----CCcccccC
Q psy11297          7 MKRMGCLSASVVQSSQASPNLRLEESPCLSH--PCQNGATC-QDEEDGLFECLCSPEFT----GYLCHTRA   70 (132)
Q Consensus         7 ~~~~~~~~~~~cp~~~~g~~C~~~~~~C~~~--pC~ngg~C-~~~~~~~~~C~C~~g~~----G~~C~~~~   70 (132)
                      ....|-|.. .|+..|.|..|+. +++|...  +|.+  +| ++.. ++|+|.|++||.    |..|+...
T Consensus        63 ~~~~~~y~C-~C~~G~~G~~C~~-~deC~~~~~~C~~--~C~~n~~-g~y~C~C~~Gy~l~~dG~~C~~~~  128 (146)
T 1x7a_L           63 KDDINSYEC-WCQVGFEGKNCEL-DATCNIKNGRCKQ--FCKTGAD-SKVLCSCTTGYRLAPDQKSCKPAV  128 (146)
T ss_dssp             EECSSCEEE-ECCSSEESTTTCE-ECCTTSGGGSCSS--BCCCCSS-SCCCCBCCTTEEECTTSSSEEECS
T ss_pred             ECCCCCEEE-ecCCCCcCCcCCC-CccccCCCCCCcC--CCCCCCC-CCEEeEcCCCcEeCCCCCcCCCCC
Confidence            334444443 3555566999974 4899874  5765  89 7776 569999999999    89998643

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=97.41  E-value=0.00015  Score=39.34  Aligned_cols=32  Identities=25%  Similarity=0.682  Sum_probs=25.8

Q ss_pred             CCCCCCCCeEeeC-CCCceEEeCCCCccCCcccc
Q psy11297         36 SHPCQNGATCQDE-EDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        36 ~~pC~ngg~C~~~-~~~~~~C~C~~g~~G~~C~~   68 (132)
                      .+.|.|| +|... ....++|.|++||+|.+|+.
T Consensus        13 ~~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~   45 (50)
T 3e50_C           13 TQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEH   45 (50)
T ss_pred             cCcccCC-EEeeccCCCCeEEECCCCCcccCCCc
Confidence            4789997 99842 12359999999999999986

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=97.40  E-value=0.00014  Score=39.43  Aligned_cols=34  Identities=21%  Similarity=0.577  Sum_probs=26.6

Q ss_pred             CCCCCCCCeEe-eCCCCceEEeCCCCccCCcccccC
Q psy11297         36 SHPCQNGATCQ-DEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        36 ~~pC~ngg~C~-~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      .+.|.| |+|. ....+.+.|.|+.||+|.+||...
T Consensus        13 ~~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~~   47 (50)
T 1iox_A           13 KHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCERVD   47 (50)
T ss_dssp             TTSCTT-CCEEEETTTTEEEECCCTTEETTTTCEEC
T ss_pred             cCcccC-CEEEeEcCCCCeEEECCCCcccCCCCeec
Confidence            478999 6996 222346999999999999999753

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=97.38  E-value=0.00014  Score=54.04  Aligned_cols=45  Identities=27%  Similarity=0.612  Sum_probs=30.6

Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         18 VQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      |+..+.|.+|+.  +.|.+ +|.++|+|+.    .+.|.|++||+|..|+..
T Consensus       169 C~~G~~G~~C~~--~~C~~-~C~~~G~C~~----~~~C~C~~G~~G~~C~~~  213 (324)
T 2ygq_A          169 CPDGFHGPHCEK--ALCTP-RCMNGGLCVT----PGFCICPPGFYGVNCDKA  213 (324)
T ss_dssp             CCTTEESSSSCE--ESSSS-CCCTTCEECS----SCCEECCTTCBTTTTCBC
T ss_pred             CCCCCcCCCCCC--CCCCC-CCCCCCEEcC----CCEEeCCCCccCCCcccC
Confidence            445556778865  35653 7888888864    257888888888887753

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=97.33  E-value=0.0001  Score=46.88  Aligned_cols=35  Identities=23%  Similarity=0.611  Sum_probs=29.7

Q ss_pred             cCCCCCCCCCCCCCCeEeeC-CCCceEEeCCCCccCCcc
Q psy11297         29 LEESPCLSHPCQNGATCQDE-EDGLFECLCSPEFTGYLC   66 (132)
Q Consensus        29 ~~~~~C~~~pC~ngg~C~~~-~~~~~~C~C~~g~~G~~C   66 (132)
                      +++++|.++||.+  +|++. . ++|+|.|++||.|..+
T Consensus         2 ~dideC~~~pC~~--~C~~~~~-g~y~C~C~~Gy~g~~~   37 (118)
T 1dx5_I            2 EPVDPCFRANCEY--QCQPLDQ-TSYLCVCAEGFAPIPH   37 (118)
T ss_dssp             CCCCGGGGCCCSS--EEEECSS-SCEEEECCTTEEEETT
T ss_pred             CccccCCCCCCCC--CCCCCCC-CCEEeECCCCccccCC
Confidence            4678999999985  99998 6 4699999999998744

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.30  E-value=3.8e-05  Score=48.20  Aligned_cols=55  Identities=16%  Similarity=0.273  Sum_probs=13.7

Q ss_pred             eEeecCCccCCeecCCCCCC---CCcccCCCCCCC-CCCCCCCeEeeCCCCceEEeCCCCccCC
Q psy11297          5 VRMKRMGCLSASVVQSSQAS---PNLRLEESPCLS-HPCQNGATCQDEEDGLFECLCSPEFTGY   64 (132)
Q Consensus         5 ~~~~~~~~~~~~~cp~~~~g---~~C~~~~~~C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~G~   64 (132)
                      .+.+..|-|... ||..|.|   ..|+ ++++|.. +||.  ++|++.. ++|.|.|++||.+.
T Consensus        42 ~C~n~~g~y~C~-C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~-gsy~C~C~~Gy~~~  100 (107)
T 2w2n_E           42 VCNDLKIGYECL-CPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLE-GGYKCQCEEGFQLD  100 (107)
T ss_dssp             EEECCSBSCEEE-CCTTCEEETTTEEE-C-----------------------------------
T ss_pred             EeEeCCCCeEEE-CCCCccccCCCccc-cccccCCCCCcC--CeeecCC-CCEEEECCCCceEC
Confidence            344555555554 4544545   7897 8999984 8896  6999987 46999999999864

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=97.30  E-value=0.00012  Score=54.46  Aligned_cols=44  Identities=27%  Similarity=0.577  Sum_probs=29.2

Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         18 VQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      |+..+.|.+|+.  ..|. .+|.++|+|...    ++|.|++||+|..|+.
T Consensus       201 C~~G~~G~~C~~--~~C~-~~C~~~G~C~~~----~~C~C~~G~~G~~C~~  244 (324)
T 2ygq_A          201 CPPGFYGVNCDK--ANCS-TTCFNGGTCFYP----GKCICPPGLEGEQCEI  244 (324)
T ss_dssp             CCTTCBTTTTCB--CCCS-SCCCSSCCBSCS----SCBCCCTTCCTTTTC-
T ss_pred             CCCCccCCCccc--CcCC-CCCCCCCeeCCC----CeeeCCCCccCCCCCc
Confidence            444555778864  3464 578887888642    5788888888887764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.28  E-value=4.4e-05  Score=57.57  Aligned_cols=47  Identities=21%  Similarity=0.664  Sum_probs=13.0

Q ss_pred             CccCCeecCCCCC----CCCcccCCCCCC-CCCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         11 GCLSASVVQSSQA----SPNLRLEESPCL-SHPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        11 ~~~~~~~cp~~~~----g~~C~~~~~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      |-|... |+..|.    |..| +++++|. ..||.++  |++.. ++|.|.|++||.
T Consensus        22 g~~~C~-C~~G~~l~~~~~~C-~d~~eC~~~~~C~~~--C~~~~-g~~~C~C~~g~~   73 (386)
T 3v65_B           22 GAVQCT-CHTGYRLTEDGRTC-QDVNECAEEGYCSQG--CTNSE-GAFQCWCEAGYE   73 (386)
T ss_dssp             --------------------------------CCTTE--EC------CCEECCTTEE
T ss_pred             CCcEeE-CCCCceECCCCCcc-CccceeCCcCcccCc--CCCCC-CCCeEEECCCce
Confidence            334442 444454    6777 5777885 5777753  87775 788888888887

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=97.23  E-value=0.00017  Score=49.54  Aligned_cols=39  Identities=26%  Similarity=0.631  Sum_probs=30.3

Q ss_pred             CCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC
Q psy11297         25 PNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        25 ~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      +.|.+  ..|. .+|.|||.|+..    ..|.|+.||+|..|+...
T Consensus       144 K~C~~--~~C~-~~C~ngG~Cv~P----~~C~C~~Gw~G~~C~~~~  182 (188)
T 2ygo_A          144 KTCQQ--AECP-GGCRNGGFCNER----RICECPDGFHGPHCEGTK  182 (188)
T ss_dssp             EEECC--CCCT-TCCCTTCEECTT----SCEECCTTCBTTTTCBC-
T ss_pred             ccccC--CccC-CCCCCCCEeCCC----CcccCcCCCCCCCCcCCc
Confidence            35543  3576 689999999963    589999999999999754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.22  E-value=6.2e-05  Score=58.50  Aligned_cols=46  Identities=22%  Similarity=0.556  Sum_probs=11.5

Q ss_pred             ecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         17 VVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        17 ~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      .|+..+.|..|+.  +.|.+ ||.|+|+|+..    ++|.|++||+|..|+..
T Consensus       411 ~C~~G~~G~~C~~--~~C~~-~C~~~g~C~~~----~~C~C~~G~~G~~C~~~  456 (463)
T 2wg3_C          411 CCSPGWEGDFCRT--AKCEP-ACRHGGVCVRP----NKCLCKKGYLGPQCEQV  456 (463)
T ss_dssp             EECTTEESTTSCE--ECC-----------------------------------
T ss_pred             CCCCCcCCCcCCc--CcCCC-CCCCCCEECCC----CEEECCCCcccCCCCCC
Confidence            4556677999963  57987 99999999853    69999999999999864

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.13  E-value=0.00023  Score=57.86  Aligned_cols=46  Identities=17%  Similarity=0.442  Sum_probs=38.0

Q ss_pred             cCCCCCCCCcc--cCCCCCCCC---CCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         18 VQSSQASPNLR--LEESPCLSH---PCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        18 cp~~~~g~~C~--~~~~~C~~~---pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      |+..+.|.+|+  ...+.|..+   +|.++|+|..     ..|.|.+||+|.+|++
T Consensus       542 C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~-----g~C~C~~Gy~G~~Ce~  592 (687)
T 3k6s_B          542 CHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC-----NVCECHSGYQLPLCQE  592 (687)
T ss_dssp             ECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS-----SCBCCSTTCCTTTTCC
T ss_pred             cCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC-----CEEECCCCCcCCCCCC
Confidence            56667799998  335788765   8999999975     4699999999999987

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=97.11  E-value=0.00011  Score=49.04  Aligned_cols=37  Identities=22%  Similarity=0.501  Sum_probs=30.0

Q ss_pred             cccCCCCCCC--CCCCCCCeEeeCCCCceEEeCCCCccCCc
Q psy11297         27 LRLEESPCLS--HPCQNGATCQDEEDGLFECLCSPEFTGYL   65 (132)
Q Consensus        27 C~~~~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~G~~   65 (132)
                      +.+++++|..  ++|.| ++|++.. ++|+|.|++||+|..
T Consensus       118 ~c~dideC~~~~~~C~~-g~C~n~~-gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A          118 ILEDIDECQELPGLCQG-GKCINTF-GSFQCRCPTGYYLNE  156 (162)
T ss_dssp             CEEECCHHHHCGGGGBT-SEEEECS-SCEEEECCTTCCBCT
T ss_pred             ccCccccccCCCCCcCC-CEeEcCC-CCEEeeCCCCccCCC
Confidence            4468899985  56986 6999987 469999999998754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.03  E-value=0.00014  Score=54.82  Aligned_cols=28  Identities=18%  Similarity=0.460  Sum_probs=0.8

Q ss_pred             CceEEeCCCCcc----CCcccccCCCCCCCCCC
Q psy11297         51 GLFECLCSPEFT----GYLCHTRAPPKLYDTPA   79 (132)
Q Consensus        51 ~~~~C~C~~g~~----G~~C~~~~~~c~~~~~~   79 (132)
                      ++|.|.|++||.    |..| +++++|....+|
T Consensus        22 g~~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C   53 (386)
T 3v65_B           22 GAVQCTCHTGYRLTEDGRTC-QDVNECAEEGYC   53 (386)
T ss_dssp             -------------------------------CC
T ss_pred             CCcEeECCCCceECCCCCcc-CccceeCCcCcc
Confidence            359999999998    9999 677877533333

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=97.02  E-value=0.00029  Score=54.23  Aligned_cols=44  Identities=27%  Similarity=0.762  Sum_probs=34.9

Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         18 VQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      |+..+.|+.|+.   .|  .||.|+|+|.+.   +++|.|++||+|.+|+..
T Consensus       189 C~~g~~G~~C~~---~C--~~C~~~G~C~~~---~g~C~C~~G~~G~~Ce~~  232 (423)
T 2gy5_A          189 CEAQKWGPECNH---LC--TACMNNGVCHED---TGECICPPGFMGRTCEKA  232 (423)
T ss_dssp             SCTTEESTTSCE---EC--CCCCTTCEECTT---TCCEECCTTEESTTSCEE
T ss_pred             CCCCCCCCCCCC---CC--CCCCCCCEEECC---CCcEeCCCCccCCCcccc
Confidence            555555888874   45  389999999873   389999999999999975

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=96.98  E-value=0.00028  Score=49.69  Aligned_cols=43  Identities=23%  Similarity=0.538  Sum_probs=36.6

Q ss_pred             CCCCCcccCCCCCCCC---CCCCC--CeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         22 QASPNLRLEESPCLSH---PCQNG--ATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        22 ~~g~~C~~~~~~C~~~---pC~ng--g~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      |.|..|+.+...|..+   +|.++  |+|..   +  +|.|.+||+|..|+..
T Consensus       168 ~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~---g--~C~C~~G~~G~~C~~~  215 (217)
T 2p28_B          168 IYGQYCECDTINCERYNGQVCGGPGRGLCFC---G--KCRCHPGFEGSACQHH  215 (217)
T ss_dssp             EESTTSCEESSCSCEETTEETTCTTTEEEET---T--EEEECTTEESTTSCEE
T ss_pred             EECCCcccCCccCCCCCCCCCCCCCCcEEeC---C--eeECCCCCccCCcCCC
Confidence            5699999777889876   89988  99983   3  8999999999999864

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.90  E-value=0.00072  Score=39.21  Aligned_cols=33  Identities=24%  Similarity=0.603  Sum_probs=25.4

Q ss_pred             CCCCCCC--CCCCCCCeEeeCCCCceEEeC-CCCccC
Q psy11297         30 EESPCLS--HPCQNGATCQDEEDGLFECLC-SPEFTG   63 (132)
Q Consensus        30 ~~~~C~~--~pC~ngg~C~~~~~~~~~C~C-~~g~~G   63 (132)
                      ++++|..  ++|.++++|++.. ++|+|.+ ..||.+
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~-Gsy~C~~~~~g~~~   37 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHY-GGYLCLPRSAAVIN   37 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETT-CCEEEEETTSCCCS
T ss_pred             ccccccCCCCCCCCCCEeECCC-CCeEecccCCcccc
Confidence            6788875  6799889999998 5699995 455543

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.86  E-value=0.00029  Score=51.44  Aligned_cols=39  Identities=33%  Similarity=0.749  Sum_probs=30.2

Q ss_pred             cCCCCCC--CCCCCCCCeEeeCCCCceEEeCCCCcc--CCcccc
Q psy11297         29 LEESPCL--SHPCQNGATCQDEEDGLFECLCSPEFT--GYLCHT   68 (132)
Q Consensus        29 ~~~~~C~--~~pC~ngg~C~~~~~~~~~C~C~~g~~--G~~C~~   68 (132)
                      +++++|.  .++|..++.|++.. ++|.|.|.+||.  |..|..
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~-Gsy~C~C~~Gy~GnG~~C~d   45 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYA-TGFCCRCVANYTGNGRQCVA   45 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECS-SCEEEEECTTEEECSSSEEE
T ss_pred             ccchhccCCCCCCCCCCEeEcCC-CCeEEEcCCCCCCCCCcCCC
Confidence            5788997  57899899999998 569999999998  678854

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=96.65  E-value=0.00045  Score=54.29  Aligned_cols=51  Identities=16%  Similarity=0.369  Sum_probs=8.8

Q ss_pred             cCCCCCCCCccc----------CCCCCCCCCCCCCCeEeeCCC-CceEEeCCCCccCCcccc
Q psy11297         18 VQSSQASPNLRL----------EESPCLSHPCQNGATCQDEED-GLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        18 cp~~~~g~~C~~----------~~~~C~~~pC~ngg~C~~~~~-~~~~C~C~~g~~G~~C~~   68 (132)
                      |+..+.|.+|++          ..+.|.+.+|.+++.|...-+ .++.|.|++||+|.+|++
T Consensus       464 C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          464 CKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             BCTTCCSTTTCC--------------------------------------------------
T ss_pred             CCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence            666677999963          456788899999988875421 236899999999999985

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.56  E-value=0.00047  Score=53.00  Aligned_cols=28  Identities=46%  Similarity=1.143  Sum_probs=0.0

Q ss_pred             CCCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         37 HPCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        37 ~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      .||+|||+|.+..    +|.|++||+|..|+.
T Consensus       371 ~~C~ngg~C~~~~----~C~C~~G~~G~~Ce~  398 (426)
T 3zyj_B          371 LHCQNGGTCHNNV----RCLCPAAYTGILCEK  398 (426)
T ss_dssp             --------------------------------
T ss_pred             ccCCCCCCcCCCC----CCcCCCCCcCCCCcC
Confidence            5899999998753    899999999999975

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=96.50  E-value=0.0013  Score=53.49  Aligned_cols=52  Identities=19%  Similarity=0.411  Sum_probs=39.7

Q ss_pred             cCCCCCCCCcccCCC---------CCCCC----CCCCCCeEeeCCCCceEEeCC------CCccCCcccccCCCCC
Q psy11297         18 VQSSQASPNLRLEES---------PCLSH----PCQNGATCQDEEDGLFECLCS------PEFTGYLCHTRAPPKL   74 (132)
Q Consensus        18 cp~~~~g~~C~~~~~---------~C~~~----pC~ngg~C~~~~~~~~~C~C~------~g~~G~~C~~~~~~c~   74 (132)
                      |+..+.|.+|+...+         .|...    +|.++|+|..   +  .|.|+      +||+|..|+.+...|.
T Consensus       450 C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~---G--~C~C~~~~~~~~G~~G~~Ce~~~~~C~  520 (687)
T 3k6s_B          450 CDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC---G--QCLCHTSDVPGKLIYGQYCECDTINCE  520 (687)
T ss_dssp             ECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET---T--EEEECCCCSTTCCEESTTSCEESSCSC
T ss_pred             cCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC---C--EEEcCCCCCCCCCcccccccccccccc
Confidence            555666999985443         58753    5999999992   3  89999      9999999997666664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.39  E-value=0.0012  Score=49.93  Aligned_cols=35  Identities=26%  Similarity=0.515  Sum_probs=27.9

Q ss_pred             CCCCCCCeEeeCCCCceEEeCCCCcc---CCcccccCCCCCC
Q psy11297         37 HPCQNGATCQDEEDGLFECLCSPEFT---GYLCHTRAPPKLY   75 (132)
Q Consensus        37 ~pC~ngg~C~~~~~~~~~C~C~~g~~---G~~C~~~~~~c~~   75 (132)
                      ..|.  ++|++... +|.|.|++||.   |..|+ ++++|..
T Consensus         8 ~~c~--~~C~~~~~-~y~C~C~~G~~~~~~~~C~-dideC~~   45 (400)
T 3p5b_L            8 GGCS--HVCNDLKI-GYECLCPDGFQLVAQRRCE-DIDECQD   45 (400)
T ss_dssp             GGCS--SEEEECSS-SEEEECCTTEEECSSSCEE-ECCCCST
T ss_pred             CCCC--CEeECCCC-CeEEECCCCCCcCCCCccc-Cchhhhc
Confidence            4565  38999874 59999999998   89995 7888753

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=96.24  E-value=0.0016  Score=45.76  Aligned_cols=52  Identities=19%  Similarity=0.356  Sum_probs=38.9

Q ss_pred             cCCCCCCCCcccCCC---------CCC----CCCCCCCCeEeeCCCCceEEeCCCC------ccCCcccccCCCCC
Q psy11297         18 VQSSQASPNLRLEES---------PCL----SHPCQNGATCQDEEDGLFECLCSPE------FTGYLCHTRAPPKL   74 (132)
Q Consensus        18 cp~~~~g~~C~~~~~---------~C~----~~pC~ngg~C~~~~~~~~~C~C~~g------~~G~~C~~~~~~c~   74 (132)
                      |+..+.|.+|+-..+         .|.    ..+|.++|+|+.     ..|.|.+|      |+|..|+.+...|.
T Consensus       111 C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~-----g~C~C~~gw~~~~~~~G~~Ce~~~~~C~  181 (217)
T 2p28_B          111 CDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC-----GQCLCHTSDVPGKLIYGQYCECDTINCE  181 (217)
T ss_dssp             ECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET-----TEEEECCCCSTTCCEESTTSCEESSCSC
T ss_pred             CCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC-----CceECCCCCCCcccEECCCcccCCccCC
Confidence            455566999975432         364    578999999983     37999999      69999997766664

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=95.75  E-value=0.0066  Score=40.53  Aligned_cols=31  Identities=26%  Similarity=0.651  Sum_probs=26.3

Q ss_pred             CCCCCCeEeeCCC-CceEE-eCCCCccCCcccc
Q psy11297         38 PCQNGATCQDEED-GLFEC-LCSPEFTGYLCHT   68 (132)
Q Consensus        38 pC~ngg~C~~~~~-~~~~C-~C~~g~~G~~C~~   68 (132)
                      ||.|+++|..... +.+.| .|+++|+|.+|+.
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~   34 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL   34 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCE
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCcC
Confidence            7999999987642 45899 7999999999986

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.46  E-value=0.012  Score=39.26  Aligned_cols=41  Identities=22%  Similarity=0.583  Sum_probs=30.5

Q ss_pred             CCCcccCCCCCCCCC-----CCCCCeEeeCCCCceEEeCCCCcc----CCccc
Q psy11297         24 SPNLRLEESPCLSHP-----CQNGATCQDEEDGLFECLCSPEFT----GYLCH   67 (132)
Q Consensus        24 g~~C~~~~~~C~~~p-----C~ngg~C~~~~~~~~~C~C~~g~~----G~~C~   67 (132)
                      +..+..++++|...+     |.+  .|.+.. ++|.|.|++||.    |..|+
T Consensus       117 ~~~~~~di~eC~~~~~~~~~C~~--~C~n~~-g~~~C~C~~Gy~l~~d~~~C~  166 (170)
T 1szb_A          117 AFYAAEDIDECQVAPGEAPTCDH--HCHNHL-GGFYCSCRAGYVLHRNKRTCS  166 (170)
T ss_dssp             EEEEEEECCTTCCCTTSCCSSSS--EEEEET-TEEEEECCTTEEECTTSSCEE
T ss_pred             eeeeccccCcccCCCCCCCccCC--ccccCC-CCEEEeCCCCcEECCCCCccc
Confidence            344455778898655     875  799887 569999999997    56664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.33  E-value=0.033  Score=45.97  Aligned_cols=41  Identities=24%  Similarity=0.570  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCCC-----eEeeCCCCceEEeCCCCcc---CCcccccCCCCC
Q psy11297         32 SPCLSHPCQNGA-----TCQDEEDGLFECLCSPEFT---GYLCHTRAPPKL   74 (132)
Q Consensus        32 ~~C~~~pC~ngg-----~C~~~~~~~~~C~C~~g~~---G~~C~~~~~~c~   74 (132)
                      ..|..++|.++.     .|++... +|.|.|++||.   |..|+ ++++|.
T Consensus       308 ~~C~~~~C~~~~~~C~~~C~~~~~-~y~C~C~~Gy~l~~g~~C~-dideC~  356 (791)
T 3m0c_C          308 KECGTNECLDNNGGCSHVCNDLKI-GYECLCPDGFQLVAQRRCE-DIDECQ  356 (791)
T ss_dssp             TTBSCCSTTTGGGGCSSEEEECSB-SEEEECCTTCEEETTTEEE-CCCCCS
T ss_pred             cccccccccccccCccccccCCCC-CcccCCCCCCccCCCCccc-cCcccC
Confidence            347777777654     8998874 59999999994   88896 677774

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=95.27  E-value=0.015  Score=31.70  Aligned_cols=38  Identities=26%  Similarity=0.660  Sum_probs=26.7

Q ss_pred             CCCCC--CCCCCCCeEeeCCCCceEEeCCCCcc----CCcccccCCCC
Q psy11297         32 SPCLS--HPCQNGATCQDEEDGLFECLCSPEFT----GYLCHTRAPPK   73 (132)
Q Consensus        32 ~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~----G~~C~~~~~~c   73 (132)
                      ++|..  .+|.+  .|++.. ++|+|.|++||.    |..|. ++++|
T Consensus         2 dEC~~~~~~C~~--~C~nt~-Gsy~C~C~~Gy~L~~d~~~C~-didec   45 (55)
T 2jkh_L            2 KLCSLDNGDCDQ--FCHEEQ-NSVVCSCARGYTLADNGKACI-PTGPY   45 (55)
T ss_dssp             CCTTTGGGGCSS--EEEEET-TEEEEECCTTEEECTTSSCEE-ESSSS
T ss_pred             ccccCCCCCcCc--EeEcCC-CCeEEeCCCCCEECCCCCeec-cCccc
Confidence            45653  45753  899987 579999999995    56775 45544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.90  E-value=0.039  Score=44.71  Aligned_cols=30  Identities=27%  Similarity=0.535  Sum_probs=23.2

Q ss_pred             CeEeeCCCCceEEeCCCCcc---CCcccccCCCCC
Q psy11297         43 ATCQDEEDGLFECLCSPEFT---GYLCHTRAPPKL   74 (132)
Q Consensus        43 g~C~~~~~~~~~C~C~~g~~---G~~C~~~~~~c~   74 (132)
                      .+|.+... +|.|.|++||.   |..|+ ++++|.
T Consensus       306 ~~C~~~~~-~~~C~C~~G~~~~~~~~C~-dideC~  338 (699)
T 1n7d_A          306 HVCNDLKI-GYECLCPDGFQLVAQRRCE-DIDECQ  338 (699)
T ss_dssp             TTCCCCTT-CCCCCCCSSSCCCSSSCCC-CCCCCS
T ss_pred             CCcccCCC-CcEEeCCCCeEcCCCCccc-CccccC
Confidence            47887764 59999999998   77887 677774

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.54  E-value=0.023  Score=46.02  Aligned_cols=51  Identities=18%  Similarity=0.332  Sum_probs=35.8

Q ss_pred             cCCccCCeecCCCCC--CCCcccCCCCCC-CCCCCCCCeEeeCCCCceEEeCCCCccC
Q psy11297          9 RMGCLSASVVQSSQA--SPNLRLEESPCL-SHPCQNGATCQDEEDGLFECLCSPEFTG   63 (132)
Q Consensus         9 ~~~~~~~~~cp~~~~--g~~C~~~~~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~G   63 (132)
                      ..|-|....-+++..  |..|+ ++++|. ..+|.  .+|++.. ++|+|.|++||.+
T Consensus       311 ~~~~~~C~C~~G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~-g~y~C~C~~G~~~  364 (699)
T 1n7d_A          311 LKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLE-GGYKCQCEEGFQL  364 (699)
T ss_dssp             CTTCCCCCCCSSSCCCSSSCCC-CCCCCSSSSSCT--TTCCBCS-SCBCCCCCSSCBC
T ss_pred             CCCCcEEeCCCCeEcCCCCccc-CccccCCCCccc--cccccCC-CCeeeeeeccccc
Confidence            334444433344432  77887 889997 57886  4899987 4699999999975

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.16  E-value=0.18  Score=41.68  Aligned_cols=57  Identities=18%  Similarity=0.357  Sum_probs=37.7

Q ss_pred             eecCCccCCeecCCCC---CCCCcccCCCCCC-CCCCCCCCeEeeCCCCceEEeCCCCccC----Ccccc
Q psy11297          7 MKRMGCLSASVVQSSQ---ASPNLRLEESPCL-SHPCQNGATCQDEEDGLFECLCSPEFTG----YLCHT   68 (132)
Q Consensus         7 ~~~~~~~~~~~cp~~~---~g~~C~~~~~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~G----~~C~~   68 (132)
                      .+.+|-|... |+..|   .|..|+ ++++|. ..+|  +.+|++.. ++|+|.|++||.+    ..|..
T Consensus       327 ~~~~~~y~C~-C~~Gy~l~~g~~C~-dideC~~~~~C--~~~C~n~~-gsy~C~C~~Gy~l~~~~~~C~~  391 (791)
T 3m0c_C          327 NDLKIGYECL-CPDGFQLVAQRRCE-DIDECQDPDTC--SQLCVNLE-GGYKCQCEEGFQLDPHTKACKA  391 (791)
T ss_dssp             EECSBSEEEE-CCTTCEEETTTEEE-CCCCCSSSSSC--TTTCCBCS-SCBCCCCCSSEECCSSCCCCEE
T ss_pred             cCCCCCcccC-CCCCCccCCCCccc-cCcccCCCCCC--CCeeecCC-CCceeecCCCCEeCCCCceeee
Confidence            3334434333 44444   478896 889997 3455  46899987 4699999999964    55643

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=93.84  E-value=0.032  Score=43.77  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=33.6

Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCCCCeEeeCC---CCceEEeCCCCccCCcccc
Q psy11297         18 VQSSQASPNLRLEESPCLSHPCQNGATCQDEE---DGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        18 cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~---~~~~~C~C~~g~~G~~C~~   68 (132)
                      |+..+.|..|+ ....|.+.+|.++++|....   ..++.|.|++||+|.+|++
T Consensus       423 C~~Gy~G~~c~-~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~  475 (525)
T 4aqs_A          423 CKEGFYDLSAE-DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ  475 (525)
T ss_dssp             ECTTEECCCTT-STTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC
T ss_pred             CCCCCcCCCCC-CCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCccc
Confidence            33333355554 34568777888877776431   1246899999999999974

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=92.88  E-value=0.089  Score=30.03  Aligned_cols=42  Identities=19%  Similarity=0.527  Sum_probs=28.7

Q ss_pred             cCCCCCCC--CCCCCCCeEeeCCCCceEEeCCCCcc----CCcccccCCCC
Q psy11297         29 LEESPCLS--HPCQNGATCQDEEDGLFECLCSPEFT----GYLCHTRAPPK   73 (132)
Q Consensus        29 ~~~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~----G~~C~~~~~~c   73 (132)
                      .++++|..  ..|.+  .|++...++|+|.|+.||.    |..|.. +++|
T Consensus         3 ~d~~eC~~~nggC~h--~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d-~dec   50 (69)
T 1kli_L            3 DDQLICVNENGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCTP-TVEY   50 (69)
T ss_dssp             SCCCCTTSGGGGCSS--EEEEETTTEEEEECCTTEEECTTSSCEEE-CSSS
T ss_pred             cccccccCCCCCcCC--EeEcCCCCCEEEeCCCCCeECCCCCcccC-cccc
Confidence            46778864  34653  7998873269999999984    667753 4443

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=92.75  E-value=0.085  Score=44.19  Aligned_cols=40  Identities=23%  Similarity=0.491  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      +.++|.-+||+|++++.... ....|.|++++.|..|+...
T Consensus       496 e~~~c~C~PC~ngg~~~l~g-~~C~C~C~~g~~G~~Ce~~~  535 (913)
T 3t5o_A          496 KFDPCQCAPCPNNGRPTLSG-TECLCVCQSGTYGENCEKQS  535 (913)
T ss_dssp             TTCGGGSCCBTTTBEEEEET-TEEEEECCTTBCSTTSCCBC
T ss_pred             ccccccCCCCCCCCEeecCC-CceEEEccCCccccCccCcc
Confidence            34567667999999999765 35899999999999998865

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=92.46  E-value=0.13  Score=27.67  Aligned_cols=29  Identities=21%  Similarity=0.512  Sum_probs=21.4

Q ss_pred             eEeeCCCCceEEeCCCCcc----CCcccccCCCC
Q psy11297         44 TCQDEEDGLFECLCSPEFT----GYLCHTRAPPK   73 (132)
Q Consensus        44 ~C~~~~~~~~~C~C~~g~~----G~~C~~~~~~c   73 (132)
                      .|++...++|+|.|++||.    |..|. ++++|
T Consensus        12 ~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~-d~dec   44 (53)
T 2bz6_L           12 YCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY   44 (53)
T ss_dssp             EEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             EeEcCCCCCEEeeCCCCCEECCCCCccc-CCccc
Confidence            6888773269999999985    67785 45554

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=92.05  E-value=0.17  Score=33.00  Aligned_cols=36  Identities=28%  Similarity=0.669  Sum_probs=26.7

Q ss_pred             cCCCCCCC---CCCCCCCeEeeCCCCceEEeCCCCcc----CCccc
Q psy11297         29 LEESPCLS---HPCQNGATCQDEEDGLFECLCSPEFT----GYLCH   67 (132)
Q Consensus        29 ~~~~~C~~---~pC~ngg~C~~~~~~~~~C~C~~g~~----G~~C~   67 (132)
                      .++++|..   .+|.  ..|.+.. ++|.|.|.+||.    |..|+
T Consensus       115 ~d~~eC~~~~~~~C~--~~C~n~~-g~~~C~C~~Gy~l~~~~~~C~  157 (159)
T 1nzi_A          115 TDINECTDFVDVPCS--HFCNNFI-GGYFCSCPPEYFLHDDMKNCG  157 (159)
T ss_dssp             EECCTTTC-CCCCSS--SEEEEET-TEEEEECCTTCEECTTSSCEE
T ss_pred             ccCcccCCCCCCCCC--CcccCcC-CCEEEecCCCcEECCCCCccc
Confidence            45678875   3564  5898886 569999999997    56664

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=90.97  E-value=0.26  Score=26.82  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             CCcccccCCCCCCCCCCCCCcceEEec
Q psy11297         63 GYLCHTRAPPKLYDTPAFNGSSHIVMK   89 (132)
Q Consensus        63 G~~C~~~~~~c~~~~~~~~g~~~~~~~   89 (132)
                      |..|+.++++|. +.||.+++.+...+
T Consensus         1 G~~c~~~~~eC~-s~pC~NgGtC~~~~   26 (55)
T 3u7u_G            1 GTSHLVKCAEKE-KTFCVNGGECFMVK   26 (55)
T ss_dssp             --CCEEECCSTT-TTTSCTTCEEEEEC
T ss_pred             CCCCcccCCCCc-CCCCCCCCCcCCCC
Confidence            678999999998 89999999998754

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=90.68  E-value=0.1  Score=27.79  Aligned_cols=27  Identities=19%  Similarity=0.562  Sum_probs=20.1

Q ss_pred             eEeeCCCCceEEeCCCCcc----CCcccccCCC
Q psy11297         44 TCQDEEDGLFECLCSPEFT----GYLCHTRAPP   72 (132)
Q Consensus        44 ~C~~~~~~~~~C~C~~g~~----G~~C~~~~~~   72 (132)
                      .|++.. ++|+|.|++||.    |..|. ++++
T Consensus        11 ~C~n~~-gs~~C~C~~Gy~L~~d~~tC~-dide   41 (51)
T 1kig_L           11 FCREER-SEVRCSCAHGYVLGDDSKSCV-STER   41 (51)
T ss_dssp             CCCEET-TEECCCCCTTEEECTTSSCEE-ECSS
T ss_pred             EeEcCC-CCeEEeCCCCcEECCCCCccc-cCCc
Confidence            577776 579999999995    67775 3444

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=88.46  E-value=0.081  Score=35.14  Aligned_cols=48  Identities=21%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             cCCCCCCCCccc-------------CCCCCCCCCCCCCC------eEeeCCCCceEEeCCCCccCCcccc
Q psy11297         18 VQSSQASPNLRL-------------EESPCLSHPCQNGA------TCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        18 cp~~~~g~~C~~-------------~~~~C~~~pC~ngg------~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      |...+.|.+|++             ..+.|.+=+|.+.|      +|...   +..|.|+++|+|.+|++
T Consensus        80 C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~---tG~C~C~~g~~G~~Cd~  146 (162)
T 1klo_A           80 CIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPV---TGQCQCLPHVSGRDCGT  146 (162)
T ss_dssp             BCTTEETTTTCEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTT---TCCCCBCTTEESTTCCE
T ss_pred             CCCCCcCCCcCcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCC---CCEeECCCCCcCCCCCC
Confidence            455556777753             11234444566654      56543   25899999999999985

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=87.93  E-value=0.36  Score=38.20  Aligned_cols=40  Identities=30%  Similarity=0.688  Sum_probs=31.1

Q ss_pred             CCCC---CCCCCCCCeEeeCCCCceEEeCCCCccC--CcccccCC
Q psy11297         32 SPCL---SHPCQNGATCQDEEDGLFECLCSPEFTG--YLCHTRAP   71 (132)
Q Consensus        32 ~~C~---~~pC~ngg~C~~~~~~~~~C~C~~g~~G--~~C~~~~~   71 (132)
                      +.|.   .+||..++.|+....+.|.|.|+.||.|  ..|..+.+
T Consensus        19 ~~c~~~~~~~c~~~a~C~~~~~~~~~c~C~~G~ag~G~~c~~D~D   63 (551)
T 3fby_A           19 RFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTD   63 (551)
T ss_dssp             CBCTTSSBCCCCTTEEEEECTTSCEEEEECTTEESSSSSCEECTT
T ss_pred             ccCCCCCCCCCCCCCeeEeCCCCCEecCCCCCCCCCCcccCccCC
Confidence            4563   4789999999988767789999999975  57776543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=86.15  E-value=0.66  Score=33.42  Aligned_cols=31  Identities=23%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             CCCCCCCC-----CCCCCCeEeeCC-----CCceEEeCCCCcc
Q psy11297         30 EESPCLSH-----PCQNGATCQDEE-----DGLFECLCSPEFT   62 (132)
Q Consensus        30 ~~~~C~~~-----pC~ngg~C~~~~-----~~~~~C~C~~g~~   62 (132)
                      ..++|..+     .|.  ..|....     .++|+|.|+.||.
T Consensus       266 ~~n~C~~~~~~ng~Cs--~~C~~~p~~~~~~~~~~C~C~~g~~  306 (316)
T 1ijq_A          266 GVNWCERTTLSNGGCQ--YLCLPAPQINPHSPKFTCACPDGML  306 (316)
T ss_dssp             CCCTTSSSSSGGGGCS--SEEEECCCCSTTCCSEEEECCTTCE
T ss_pred             ccccccccccCCCCcC--cccCCCccccCCCCCeEeeCCCCCE
Confidence            34667655     354  2788653     2369999999984

>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose octasulphate, hormone/growth factor complex; HET: SO4; 1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB: 1lr8_A* 1lr9_A

Probab=84.28  E-value=1.2  Score=25.39  Aligned_cols=29  Identities=24%  Similarity=0.714  Sum_probs=23.6

Q ss_pred             CCCCCCCCCCCCCeEeeCCCCceEEeCCC
Q psy11297         31 ESPCLSHPCQNGATCQDEEDGLFECLCSP   59 (132)
Q Consensus        31 ~~~C~~~pC~ngg~C~~~~~~~~~C~C~~   59 (132)
                      +++|...+|..|..|+....+...|.|+.
T Consensus         1 ~~~C~~~~C~~g~~C~~~~~~~~~C~C~~   29 (74)
T 1lr7_A            1 METCENVDCGPGKKCRMNKKNKPRCVCAP   29 (74)
T ss_dssp             -CCSTTCCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCCCCcCcCCCEEeECCCCCeeecCCC
Confidence            36899999999999998665667899954

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=83.09  E-value=0.42  Score=30.19  Aligned_cols=42  Identities=14%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             ecCCCCCCCCcccCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         17 VVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        17 ~cp~~~~g~~C~~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      .||..+.|.+|+.+++    .+|.++     .. ..|++.+..+++|..|+.
T Consensus        22 ~Cp~g~~G~~Ce~~~~----~~C~~g-----~G-~~YrG~~~~t~sG~~Cq~   63 (122)
T 2fd6_A           22 NCPKKFGGQHCEIDKS----KTCYEG-----NG-HFYRGKASTDTMGRPCLP   63 (122)
T ss_dssp             ECCTTEESTTSCEESS----CCSBCS-----SC-TTCCSCCCBBTTSCBBCC
T ss_pred             cCCCCCCCccccccCc----CCCccc-----cc-ccceeeccccccCCcccC
Confidence            4677788999987654    234433     12 259999999999999975

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=81.92  E-value=1.2  Score=24.22  Aligned_cols=25  Identities=20%  Similarity=0.630  Sum_probs=19.1

Q ss_pred             eEeeCCCCceEEeCCCCcc----CCcccc
Q psy11297         44 TCQDEEDGLFECLCSPEFT----GYLCHT   68 (132)
Q Consensus        44 ~C~~~~~~~~~C~C~~g~~----G~~C~~   68 (132)
                      .|++...++|.|.|++||.    |..|..
T Consensus        12 ~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d   40 (59)
T 2wph_E           12 FCKNSADNKVVCSCTEGYRLAENQKSCEP   40 (59)
T ss_dssp             EEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred             EeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence            6888763369999999984    567764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=80.95  E-value=3  Score=30.42  Aligned_cols=34  Identities=26%  Similarity=0.824  Sum_probs=18.8

Q ss_pred             CCCC-CCCCCCCCeEeeCCCCceEEeCCCCcc----CCcccc
Q psy11297         32 SPCL-SHPCQNGATCQDEEDGLFECLCSPEFT----GYLCHT   68 (132)
Q Consensus        32 ~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~----G~~C~~   68 (132)
                      ++|. ...|.+  .|.+.. ++|.|.|++||.    +..|..
T Consensus         2 ~ec~~~~~C~~--~C~n~~-g~~~C~C~~g~~l~~d~~~C~~   40 (349)
T 3v64_C            2 NECAEEGYCSQ--GCTNSE-GAFQCWCEAGYELRPDRRSCKA   40 (349)
T ss_dssp             -------CCSS--EECCC----CCEECCTTEEECTTSSCEEE
T ss_pred             cccCCCCCCcC--eeecCC-CCeEEECCCCccCCCCCCcccc
Confidence            4564 244654  788877 569999999985    556754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1h30a1	191	b.29.1.4 (A:261-451) Growth-arrest-specific protei	1e-10
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	3e-10
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	7e-10
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	8e-10
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	1e-09
d1dyka1	189	b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse	2e-09
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-09
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	2e-09
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	4e-09
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	1e-08
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	1e-08
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	1e-08
d1pz7a_	195	b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI	4e-08
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	4e-08
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	9e-08
d1dyka2	185	b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse	2e-07
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	3e-07
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	3e-07
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	5e-07
d1d2sa_	170	b.29.1.4 (A:) Sex hormone-binding globulin {Human	3e-06
d2r1da1	177	b.29.1.4 (A:36-212) Ligand-binding domain of neure	1e-05
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	2e-04
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	0.002
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	0.003

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-10
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 37  HPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK-TLKAYN 95
              Q+  TC+D         C P         ++   LY    F+G+  I ++       
Sbjct: 9   KLSQDMDTCEDI------LPCVPFSVA-----KSVKSLYLGRMFSGTPVIRLRFKRLQPT 57

Query: 96  KLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
           +L  E +F+T   +GILL+   +      ++ LA+  
Sbjct: 58  RLVAEFDFRTFDPEGILLFAGGH--QDSTWIVLALRA 92

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 3e-10
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C+S+PCQN ATC D+    F+C+C P + G  C  
Sbjct: 3  ECVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCEV 37

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 7e-10
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
           C S+PC NG +C+D+ +  +EC C   F G  C
Sbjct: 5  QCESNPCLNGGSCKDDINS-YECWCPFGFEGKNC 37

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 8e-10
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
           C + PCQN   C+D     + C C   F G  C  
Sbjct: 2  QCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCEL 36

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (115), Expect = 1e-09
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
           C S PC +   C D+ +  F+C C   FTG+LC
Sbjct: 2  ECASSPCLHNGRCLDKINE-FQCECPTGFTGHLC 34

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (121), Expect = 2e-09
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 66  CHTRAPPKLYDTPA---FNGSSHIVM--KTLKAYNKLSIEIEFKTNKNDGILLYNQQNLD 120
           C   + P L         + +SHI +     K  N+L+IE+E +T    G+L Y  +   
Sbjct: 4   CVAESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARI-- 61

Query: 121 GTGDFVSLAIVN 132
              DF ++ + N
Sbjct: 62  NHADFATVQLRN 73

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.8 bits (114), Expect = 2e-09
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
           C S PCQNG +C+D+    + C C P F G  C
Sbjct: 4  QCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNC 36

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 2e-09
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
          + C +  C     C +  +  + C C P F+G  C
Sbjct: 2  AACTNTSCSGHGECVETINN-YTCKCDPGFSGLKC 35

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (112), Expect = 4e-09
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHT 68
          PC S+PCQN   C       ++C C+   F G  C T
Sbjct: 3  PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 1e-08
 Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
          + C    C     C +     + C C P F G  C
Sbjct: 2  ASCQDMSCSKQGECLETIGN-YTCSCYPGFYGPEC 35

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 45.6 bits (108), Expect = 1e-08
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPE-FTGYLCHT 68
          PC  +PCQ+   C       ++C C+   ++G  C  
Sbjct: 4  PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (108), Expect = 1e-08
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 32 SPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTR 69
                 C NG  C   E    + C C   ++G  C TR
Sbjct: 7  PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.6 bits (112), Expect = 4e-08
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 17/73 (23%)

Query: 76  DTPAFNGSSHIVMK----------------TLKAYNKLSIEIEFKTNKNDGILLYNQQNL 119
           +  AF+G +++                   + KA      E+  KT    G++L++ +  
Sbjct: 7   EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKG- 65

Query: 120 DGTGDFVSLAIVN 132
               D+++LAIV+
Sbjct: 66  LERSDYIALAIVD 78

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 4e-08
 Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 32 SPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTR 69
                 C +   C   E    + C C   + G  C  R
Sbjct: 5  PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 43

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 9e-08
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
            ++PC++   C +     FEC C   +TG  C  
Sbjct: 8  LGANPCEHAGKCINTLGS-FECQCLQGYTGPRCEI 41

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 80  FNGSSHIVM-KTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
           F+G+         K    L +E EF+T +  G+LL          D + + +++
Sbjct: 8   FDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS---SQKMDGMGIEMID 58

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-07
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 34 CLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHT 68
          C    C NG TCQ       F C C   F G  C  
Sbjct: 1  CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 36

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 3e-07
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 33 PCLSHPCQNGATCQDEED----GLFECLCSPEFTGYLCHTRAPPKLYD 76
                C NG  C   +D      + C C P FTG  C    P K+ +
Sbjct: 8  EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN 55

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 5e-07
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
          E PC S  C +G TC D     F C C   + G  C  
Sbjct: 8  EHPCASLCCGHG-TCIDGIGS-FSCDCRSGWEGRFCQR 43

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 3e-06
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 71  PPKLY--DTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSL 128
           PP ++  + P     + +     K   K S   E +T   +G++ Y   N     D+  L
Sbjct: 1   PPAVHLSNGPGQEPIAVMTFDLTK-ITKTSSSFEVRTWDPEGVIFYGDTN--PKDDWFML 57

Query: 129 AIVN 132
            + +
Sbjct: 58  GLRD 61

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 80  FNGSSHIVMK----TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
             G   I  K       +     + I F T + + +L+    +  G GD++ L I  
Sbjct: 9   SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIHQ 64

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 2e-04
 Identities = 7/35 (20%), Positives = 10/35 (28%)

Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
               H C  G       +    C+C   + G  C
Sbjct: 9  PKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARC 43

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.002
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH 67
          S  ++  C +G      +     C C   +TG  C 
Sbjct: 7  SSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCE 42

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.003
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH 67
              +  C +G      ++    C+C   + G  C 
Sbjct: 8  PDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCE 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	99.45
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.42
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	99.4
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	99.38
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	99.37
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	99.34
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	99.34
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	99.29
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	99.29
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	99.24
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	99.21
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	99.19
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.96
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.87
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.82
d1h30a1	191	Growth-arrest-specific protein Gas6 {Human (Homo s	98.47
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	98.38
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	98.34
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	98.27
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	98.21
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	98.14
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	98.12
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	98.05
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	97.98
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	97.91
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	97.64
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.23
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.15
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.1
d1szba2	45	Mannose-binding protein associated serine protease	97.05
d1nt0a3	45	Mannose-binding protein associated serine protease	97.02
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	96.9
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.29
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	96.16
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	95.8
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	94.91
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	93.63
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	90.05
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	88.94
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	88.07
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	87.53
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	86.95
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	86.89
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	85.26

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-14  Score=72.60  Aligned_cols=38  Identities=42%  Similarity=1.029  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        31 ~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      +|+|.++||+|+|+|++..+ +|+|.|++||+|++||.+
T Consensus         1 Id~C~~~PC~n~g~C~~~~~-~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIG-EFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSS-CEEEECCTTEESSSSCEE
T ss_pred             CcCCcCCCCCCCCEEECCCC-CEEEeCCCCCccCcCeeC
Confidence            58999999999999999885 599999999999999874

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.7e-14  Score=71.62  Aligned_cols=38  Identities=37%  Similarity=0.945  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      ++++|.++||+|+|+|++..+ +|+|.|++||+|++||.
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~-~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDIN-SYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETT-EEEEECCTTCCSTTSCC
T ss_pred             ccccCCCCCCCCCcEEEcCCC-CEEEECCCCCCCCCCCC
Confidence            678999999999999999885 59999999999999973

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=5.4e-14  Score=71.34  Aligned_cols=37  Identities=41%  Similarity=1.058  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccc
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH   67 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~   67 (132)
                      ++++|.++||+|+|+|++.+. +|+|.|++||+|.+||
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~-~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQ-SYICFCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETT-EEEEECCTTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEECCCC-CeEEECCCCCcCCCCC
Confidence            478999999999999999885 6999999999999996

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.6e-13  Score=67.95  Aligned_cols=35  Identities=40%  Similarity=0.984  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCccc
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH   67 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~   67 (132)
                      |+|.++||+|+|+|++.++ +|+|.|++||+|.+||
T Consensus         1 d~C~~~PC~ngg~C~~~~~-~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKIN-EFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSS-CEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCC-CeEEECCCCCCCCCcC
Confidence            5899999999999999986 5999999999999996

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-13  Score=70.62  Aligned_cols=38  Identities=32%  Similarity=0.760  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      |+|.++||+|+|+|++.++ +|+|.|++||+|.+|+..+
T Consensus         1 D~C~~~PC~ngg~C~~~~~-~y~C~C~~G~~G~~Cei~~   38 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLG-EYTCTCLEGFEGKNCELFT   38 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSS-SCCEECCTTEETTTTCEES
T ss_pred             CcCCCCCCCCCcEEECCCC-CEEEECCCCCCcCcCeEcc
Confidence            5899999999999999985 5999999999999999754

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.5e-13  Score=69.54  Aligned_cols=39  Identities=28%  Similarity=0.769  Sum_probs=34.9

Q ss_pred             cCCCCCC--CCCCCCCCeEeeCCCCceEEeCCCCccCCcccc
Q psy11297         29 LEESPCL--SHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        29 ~~~~~C~--~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      +++++|+  ++||.|+|+|++.+. +|+|.|++||+|++|+.
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g-~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLG-SFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSS-SEEEECCTTEESTTSCE
T ss_pred             CCCccccCCCCCCCCCcEeECCCC-CEEeECCCCCcCCCCcC
Confidence            4678887  689999999999985 59999999999999986

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-13  Score=70.66  Aligned_cols=38  Identities=24%  Similarity=0.777  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      ++|.++||+|+|+|++.++ +|+|.|++||+|++||+.+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~-~~~C~C~~g~~G~~Ce~~v   39 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETIN-NYTCKCDPGFSGLKCEQIV   39 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETT-EEEEEECTTEESTTSCEEC
T ss_pred             CcccCCcCCCCcEEECCCC-CEEEeCCCCCcCcCcCccC
Confidence            6899999999999999985 6999999999999999753

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2e-12  Score=66.95  Aligned_cols=38  Identities=34%  Similarity=0.705  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCeEeeCC-CCceEEeCCCCccCCcccccCC
Q psy11297         34 CLSHPCQNGATCQDEE-DGLFECLCSPEFTGYLCHTRAP   71 (132)
Q Consensus        34 C~~~pC~ngg~C~~~~-~~~~~C~C~~g~~G~~C~~~~~   71 (132)
                      |.++||+|||+|++.. .++|+|.|++||+|.+|+.+++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~   39 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   39 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcC
Confidence            7899999999999753 2359999999999999998875

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.7e-13  Score=68.37  Aligned_cols=38  Identities=24%  Similarity=0.648  Sum_probs=34.6

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccC
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      +.|.++||+|+|+|++.++ +|+|.|++||+|++|+...
T Consensus         2 ~~C~~~pC~ngg~C~~~~~-~y~C~C~~g~~G~~Ce~~~   39 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIG-NYTCSCYPGFYGPECEYVR   39 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSS-SEEEEECTTEESTTSCEEC
T ss_pred             CcccCCcCCCCcEEECCCC-CeEEeCCCCccCCCCCCCc
Confidence            6899999999999999985 5999999999999998753

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=99.24  E-value=2.2e-12  Score=67.11  Aligned_cols=38  Identities=26%  Similarity=0.672  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCeEeeCCCCceEEeCCC-CccCCcccc
Q psy11297         31 ESPCLSHPCQNGATCQDEEDGLFECLCSP-EFTGYLCHT   68 (132)
Q Consensus        31 ~~~C~~~pC~ngg~C~~~~~~~~~C~C~~-g~~G~~C~~   68 (132)
                      +++|.++||+|+|+|++...++|+|.|+. ||+|.+|+.
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence            58999999999999997532469999986 899999986

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.9e-12  Score=68.32  Aligned_cols=40  Identities=33%  Similarity=0.737  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEEeCCCCccCCcccccCC
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP   71 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~~~   71 (132)
                      ..++|.++||+| |+|++.++ +|+|.|++||+|.+|++++.
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~-~y~C~C~~G~~G~~Ce~~I~   46 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIG-SFSCDCRSGWEGRFCQREVS   46 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSS-CCCEEECTTEESTTSCEECC
T ss_pred             CCCcccCCCCCC-CEEECCCC-CCeEeCCCCCcCCCcccccC
Confidence            457999999998 69999985 59999999999999999873

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=6.6e-12  Score=64.89  Aligned_cols=38  Identities=37%  Similarity=0.841  Sum_probs=32.3

Q ss_pred             CCCCCCCCCCCCeEeeCCCCceEEeCC-CCccCCccccc
Q psy11297         32 SPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTR   69 (132)
Q Consensus        32 ~~C~~~pC~ngg~C~~~~~~~~~C~C~-~g~~G~~C~~~   69 (132)
                      |+|.++||+|+|+|++...++|+|.|+ +||+|.+|+..
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~p   40 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCcC
Confidence            689999999999999752246999997 69999999863

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-10  Score=65.53  Aligned_cols=43  Identities=30%  Similarity=0.619  Sum_probs=35.3

Q ss_pred             CCCCCCCCCCCCCCeEe-----eCCCCceEEeCCCCccCCcccccCCCC
Q psy11297         30 EESPCLSHPCQNGATCQ-----DEEDGLFECLCSPEFTGYLCHTRAPPK   73 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~-----~~~~~~~~C~C~~g~~G~~C~~~~~~c   73 (132)
                      +.++|.++||+|||+|.     +.. ++|.|.|++||+|.+|+..+..+
T Consensus         5 ~c~ec~~~~C~NgG~C~~~~~~~~~-~~y~C~C~~gy~G~~Ce~~~~~~   52 (63)
T d1haea_           5 KCAEKEKTFCVNGGECFMVKDLSNP-SRYLCKCQPGFTGARCTENVPMK   52 (63)
T ss_dssp             ECCHHHHTTSCTTCEEEEEESSSSS-CCEEEECCTTEESTTSCEECCSS
T ss_pred             cCCCCcCCcCCCCCEEeecccccCC-CCEEeECCCCCCCCCcCCCCCcc
Confidence            34678899999999996     334 35999999999999999887543

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=2e-09  Score=58.30  Aligned_cols=41  Identities=24%  Similarity=0.527  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCCCeEeeC-CCCceEEeCCCCccCCcccccC
Q psy11297         30 EESPCLSHPCQNGATCQDE-EDGLFECLCSPEFTGYLCHTRA   70 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~-~~~~~~C~C~~g~~G~~C~~~~   70 (132)
                      ...+|.++||.|||+|... ...+|+|.|+++|+|.+||...
T Consensus         5 ~C~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~~   46 (53)
T d3egfa_           5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             CCCTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred             CCCCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCccCC
Confidence            4468899999999999843 2235999999999999998743

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-09  Score=57.87  Aligned_cols=39  Identities=18%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCCCCeEeeC-CCCceEEeCCCCccCCccccc
Q psy11297         31 ESPCLSHPCQNGATCQDE-EDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        31 ~~~C~~~pC~ngg~C~~~-~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      ..+|.++||.|||+|... ....|+|.|+.+|+|.+||..
T Consensus         4 C~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   43 (48)
T d1nqlb_           4 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   43 (48)
T ss_dssp             CCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcC
Confidence            467889999999999853 224699999999999999864

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.1e-07  Score=61.44  Aligned_cols=51  Identities=25%  Similarity=0.473  Sum_probs=35.2

Q ss_pred             CCCCc--ceEEecccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         79 AFNGS--SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        79 ~~~g~--~~~~~~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      .|.+.  +|+.++. .....++|+|+|||..++|+|||.....  ..||++|+|+|
T Consensus        40 ~f~g~~~~~~~~~~-~~~~~~~i~~~FrT~~~~GlL~~~~~~~--~~~fi~l~l~~   92 (191)
T d1h30a1          40 MFSGTPVIRLRFKR-LQPTRLVAEFDFRTFDPEGILLFAGGHQ--DSTWIVLALRA   92 (191)
T ss_dssp             -----CCEEEECCB-SSCCCCEEEEEEEECCSSEEEEEEESCT--TSEEEEEEEET
T ss_pred             ccCCCceEEEEecc-CCCCceEEEEEEEeCCCCeEEEEEcCCC--CCcEEEEEEEC
Confidence            34444  4555553 3335679999999999999999987642  36899999975

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=4.1e-07  Score=60.54  Aligned_cols=52  Identities=23%  Similarity=0.328  Sum_probs=42.1

Q ss_pred             CCCCCcceEEeccc-CCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         78 PAFNGSSHIVMKTL-KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        78 ~~~~g~~~~~~~~~-~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ..|+|.+|+.+... .....+.|+|+|||..++|+|||.+..   ..||++|+|+|
T Consensus         6 ~~F~G~~y~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~~---~~d~~~l~l~~   58 (185)
T d1dyka2           6 TYFDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQ---KMDGMGIEMID   58 (185)
T ss_dssp             EEEEEEEEEECCSSBCCBSEEEEEEEEEESCSCEEEEEEECS---SSCEEEEEEET
T ss_pred             eEECCCceEEEcCCCCCCceEEEEEEEEECCCCEEEEEeCCC---CCceEEEEEEC
Confidence            35788899998643 344577899999999999999998654   57899999975

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.34  E-value=5e-07  Score=60.71  Aligned_cols=56  Identities=27%  Similarity=0.547  Sum_probs=43.0

Q ss_pred             CCCCCCCcceEEecccC----------------CceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         76 DTPAFNGSSHIVMKTLK----------------AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        76 ~~~~~~g~~~~~~~~~~----------------~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ....|.|.+|+.|....                .....+++|+|||..++|+|||.+.... ..||++|+|.|
T Consensus         7 ~~~~F~G~sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~frT~~~~GlLly~~~~~~-~~df~~l~L~~   78 (195)
T d1pz7a_           7 EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLE-RSDYIALAIVD   78 (195)
T ss_dssp             CCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCST-TCCEEEEEEET
T ss_pred             cCEEECCceEEEEecccccccccccccccccccccceeEEEEEEEeCCCCEEEEEEcCCCC-CCCEEEEEEEC
Confidence            45678888888874221                2235689999999999999999876544 57899999975

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=1.6e-06  Score=57.79  Aligned_cols=50  Identities=32%  Similarity=0.531  Sum_probs=39.3

Q ss_pred             CCcceEEeccc--CCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         81 NGSSHIVMKTL--KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        81 ~g~~~~~~~~~--~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      ++.+|+.++..  ....+++|+|+|||..++|+|||.+...  ..||++|+|+|
T Consensus        22 s~~s~~~~~~~~~~~~~~~~i~~~frT~~~~GlL~~~~~~~--~~dfi~l~l~~   73 (189)
T d1dyka1          22 SRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARIN--HADFATVQLRN   73 (189)
T ss_dssp             STTCEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEECTT--SSSEEEEEEET
T ss_pred             CCCceEEEecCcccccccEEEEEEEEECCCCEEEEEEcCCC--CCcEEEEEEEC
Confidence            55678877533  3446789999999999999999987543  37899999975

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.5e-06  Score=57.14  Aligned_cols=52  Identities=19%  Similarity=0.350  Sum_probs=40.2

Q ss_pred             CCCCCcceEEecccCCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         78 PAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        78 ~~~~g~~~~~~~~~~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      +..+.-+++.|+.. .....+|+|+|||..++|+|||.+...  ..||++|+|+|
T Consensus        10 ~g~~~~~~~~~~~~-~~~~~~isf~FrT~~~~GlL~~~~~~~--~~~fi~L~L~~   61 (170)
T d1d2sa_          10 PGQEPIAVMTFDLT-KITKTSSSFEVRTWDPEGVIFYGDTNP--KDDWFMLGLRD   61 (170)
T ss_dssp             TCCSCSEEEEEEGG-GCCCCEEEEEEEESCSSEEEEEEEEET--TTEEEEEEEET
T ss_pred             CCCCCeEEEEEecc-CCceeEEEEEEEECCCCEEEEEEcCCC--CCcEEEEEEEC
Confidence            34455678888743 345778999999999999999987543  37899999975

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.4e-06  Score=42.48  Aligned_cols=34  Identities=29%  Similarity=0.739  Sum_probs=27.4

Q ss_pred             CCCCCCeEeeCC--CCceEEeCCCCccCCcccccCC
Q psy11297         38 PCQNGATCQDEE--DGLFECLCSPEFTGYLCHTRAP   71 (132)
Q Consensus        38 pC~ngg~C~~~~--~~~~~C~C~~g~~G~~C~~~~~   71 (132)
                      -|+|||+|+...  +.-.+|.||.+|.|.+||.+.+
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt~   38 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS   38 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESS
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEEeccc
Confidence            489999999641  1237899999999999998764

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1e-06  Score=46.69  Aligned_cols=35  Identities=20%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             CCCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         35 LSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        35 ~~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      ..+.|.||+.|.......++|.|+.||+|.+||..
T Consensus        12 ~~~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~~   46 (50)
T d1ioxa_          12 YKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             GTTSCTTCCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             cCCCccCCeEEEeCCCCCcEeECCCCCeeCCCccc
Confidence            35789999999755445799999999999999864

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.6e-07  Score=46.62  Aligned_cols=37  Identities=19%  Similarity=0.601  Sum_probs=30.8

Q ss_pred             cCCCCCCCCCCCCCCeEeeCCCCceEEeCCCCcc--CCcc
Q psy11297         29 LEESPCLSHPCQNGATCQDEEDGLFECLCSPEFT--GYLC   66 (132)
Q Consensus        29 ~~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~--G~~C   66 (132)
                      .++++|+..++..+++|++.. |+|.|.|++||.  |..|
T Consensus         3 vDidEC~~~~~~~~~~C~Nt~-Gsy~C~C~~Gy~~~g~~C   41 (43)
T d1emoa1           3 VDMDECKEPDVCKHGQCINTD-GSYRCECPFGYILAGNEC   41 (43)
T ss_dssp             CCCCSSSSTTSCSSSCCCCCS-SCCCCCCCTTEEESSSCE
T ss_pred             cceeccCCcCCCCCCEeECCC-CCeEeECCCCcccCCCcc
Confidence            478999888777888999998 569999999996  4455

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.1e-06  Score=44.63  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=27.2

Q ss_pred             CCCCCCCCCCCeEe-eCCCCceEEeCCCCccCCccccc
Q psy11297         33 PCLSHPCQNGATCQ-DEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        33 ~C~~~pC~ngg~C~-~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      ++..++|.| |.|. ......+.|.|+.||+|.+|+.-
T Consensus         8 ~~~~~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe~~   44 (46)
T d1k36a_           8 SDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             TTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             CcCCCcCcC-CEEEEeCCCCccEeECCCCceecCceee
Confidence            445689999 5665 33334699999999999999863

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=9.6e-06  Score=53.21  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=39.2

Q ss_pred             CCcceEEeccc----CCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEcC
Q psy11297         81 NGSSHIVMKTL----KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN  132 (132)
Q Consensus        81 ~g~~~~~~~~~----~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l~~  132 (132)
                      .+++|+.|.-.    ......+|+|.|||..++|+|||...... ..||++|+|+|
T Consensus        10 ~g~~~i~y~~~~~~~~~~~~~~is~~FrT~~~~G~Ll~~~~~~~-~~~~l~l~l~~   64 (177)
T d2r1da1          10 KGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQ   64 (177)
T ss_dssp             EEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEECTT-CCCEEEEEEET
T ss_pred             CCCeEEEEECCCccCCCccccEEEEEEEeCCCCEEEEEEcCCCC-CCcEEEEEEEC
Confidence            56788887421    13346689999999999999999876433 58999999875

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.3e-06  Score=43.98  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             CCCCCCCCeEeeCCCCceEEeCCCCccCCccccc
Q psy11297         36 SHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR   69 (132)
Q Consensus        36 ~~pC~ngg~C~~~~~~~~~C~C~~g~~G~~C~~~   69 (132)
                      .+.|.||+.|.......++|.|+.||+|.+||..
T Consensus        12 ~~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~~   45 (49)
T d1moxc_          12 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHA   45 (49)
T ss_dssp             SCSSTTEEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCEeeCCeEEecCCCCCcEeECCCCCEecCCccc
Confidence            5779999988655445799999999999999863

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=6.9e-06  Score=42.01  Aligned_cols=32  Identities=25%  Similarity=0.698  Sum_probs=24.9

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      ++++|+..+..-.+.|++.. |+|.|.|++||.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~-G~y~C~C~~Gy~   33 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTP-GSYICDCPPDFE   33 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEET-TEEEEECCTTCE
T ss_pred             CccccCCCCcCcCCEeECCC-CCEEEecCCCCE
Confidence            67888764433457999998 579999999994

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.1e-06  Score=42.41  Aligned_cols=33  Identities=24%  Similarity=0.626  Sum_probs=26.3

Q ss_pred             CCCCCCC--CCCCCCCeEeeCCCCceEEeCCCCccCC
Q psy11297         30 EESPCLS--HPCQNGATCQDEEDGLFECLCSPEFTGY   64 (132)
Q Consensus        30 ~~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~G~   64 (132)
                      ++++|+.  .+|. .++|++.. |+|+|.|+.||.+.
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~-Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTP-GDFECKCDEGYESG   36 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEET-TEEEECCCSSEEEC
T ss_pred             cccccCCCCCCCC-CCEeEcCC-CCeEEeCCCCCccC
Confidence            6788975  4475 47999998 57999999999764

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=3.6e-06  Score=43.11  Aligned_cols=32  Identities=25%  Similarity=0.662  Sum_probs=24.9

Q ss_pred             cCCCCCCC--CCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         29 LEESPCLS--HPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        29 ~~~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      +++++|+.  .+|.+ ++|++.. |+|.|.|++||.
T Consensus         1 qDinEC~~~~~~c~~-~~C~Nt~-Gsy~C~C~~Gy~   34 (43)
T d1uzka2           1 EDIDECQELPGLCQG-GKCINTF-GSFQCRCPTGYY   34 (43)
T ss_dssp             EECCHHHHCGGGGBT-SEEEECS-SCEEEECCTTCC
T ss_pred             CCcccccCCCCCcCC-CEEECCC-CCeEeECCCCCe
Confidence            36778864  44754 5999998 569999999986

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4.6e-05  Score=51.41  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=35.1

Q ss_pred             CCCCCcceEEeccc----------CCceeEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEE
Q psy11297         78 PAFNGSSHIVMKTL----------KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI  130 (132)
Q Consensus        78 ~~~~g~~~~~~~~~----------~~~~~~~i~~~f~t~~~~g~ll~~~~~~~~~~d~~~l~l  130 (132)
                      ..|+|.+|+.|...          .....++|+|+|||..++|+|||.+..   ..+++.|++
T Consensus        18 ~~F~G~g~~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~---~~~~~~l~~   77 (218)
T d1h30a2          18 SFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAP---DLRAVPLSV   77 (218)
T ss_dssp             EEECSSCCEEECCCCBC--------CCBCEEEEEEEEESSSCEEEEEEEEG---GGTEEEEEE
T ss_pred             cEeCCCEEEEEeccccccccccccccceeEEEEEEEEcCCCCcEEEEEecC---CCceEEEEE
Confidence            35788888887521          122356899999999999999998764   345554443

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.1e-05  Score=40.97  Aligned_cols=31  Identities=29%  Similarity=0.874  Sum_probs=23.6

Q ss_pred             CCCCCCC--CCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         30 EESPCLS--HPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        30 ~~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      ++++|+.  ..|. +++|++.. |+|+|.|++||.
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~-Gsy~C~C~~Gy~   33 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTE-GSYRCECPPGHQ   33 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEET-TEEEEESCTTSC
T ss_pred             CccccCCCCCCCC-CCEeECCC-CCeEEeCCCCCe
Confidence            3566654  3464 46999998 579999999996

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00025  Score=37.51  Aligned_cols=20  Identities=25%  Similarity=0.718  Sum_probs=17.2

Q ss_pred             CCeEeeCCCCceEEeCCCCcc
Q psy11297         42 GATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        42 gg~C~~~~~~~~~C~C~~g~~   62 (132)
                      ...|++.. |+|.|.|++||.
T Consensus        23 ~~~C~Nt~-GsY~C~C~~Gy~   42 (53)
T d1apqa_          23 QHLCHNYV-GGYFCSCRPGYE   42 (53)
T ss_dssp             SSEEEEET-TEEEEECSTTCE
T ss_pred             cCEeEcCC-CCeEeECCCCCe
Confidence            34899998 679999999996

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00018  Score=36.08  Aligned_cols=29  Identities=28%  Similarity=0.772  Sum_probs=22.0

Q ss_pred             CCCCCC-CCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         31 ESPCLS-HPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        31 ~~~C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      +|+|+. ++|.  ..|++.. |+|.|.|+.||.
T Consensus         1 idEC~~~~~C~--~~C~n~~-Gsy~C~C~~Gy~   30 (41)
T d1i0ua2           1 IDECQDPDTCS--QLCVNLE-GGYKCQCEEGFQ   30 (41)
T ss_dssp             CCTTTTTTSCS--SCEECSS-SCCEECCCTTEE
T ss_pred             CccCCCCCCCC--CEeECCC-CCEEeECCCCCe
Confidence            356653 4664  4899988 569999999996

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00011  Score=36.76  Aligned_cols=29  Identities=34%  Similarity=0.747  Sum_probs=22.5

Q ss_pred             CCCCCCeEeeCCCCceEEeCCCCccC--Cccc
Q psy11297         38 PCQNGATCQDEEDGLFECLCSPEFTG--YLCH   67 (132)
Q Consensus        38 pC~ngg~C~~~~~~~~~C~C~~g~~G--~~C~   67 (132)
                      .|..++.|++.. ++|.|.|++||.|  ..|.
T Consensus         8 ~C~~~A~C~Nt~-Gsy~C~C~~Gy~GdG~~C~   38 (40)
T d1gl4a2           8 QCSVHAECRDYA-TGFCCRCVANYTGNGRQCV   38 (40)
T ss_dssp             GSCTTEEEEECS-SCEEEEECTTEEECSSSEE
T ss_pred             CCCCCCEeecCC-CCeEeECCCCCcCCCCEee
Confidence            455568999998 5699999999975  4453

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00043  Score=35.31  Aligned_cols=31  Identities=23%  Similarity=0.565  Sum_probs=21.9

Q ss_pred             CCCCCCCCC---CCCCeEeeCCCCceEEeCCCCcc
Q psy11297         31 ESPCLSHPC---QNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        31 ~~~C~~~pC---~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      +++|+..+-   .-...|++.. |+|+|.|+.||.
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~-Gsy~C~C~~Gy~   34 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHL-GGFYCSCRAGYV   34 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEET-TEEEEECCTTEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCC-CCeEEECCCCCe
Confidence            356665321   2245999998 579999999985

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=0.00032  Score=35.85  Aligned_cols=31  Identities=16%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             CCCCCCCC---CCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         31 ESPCLSHP---CQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        31 ~~~C~~~p---C~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      +|+|+..+   +.....|++.. ++|+|.|++||.
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~-gsy~C~C~~Gy~   34 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYL-GGYYCSCRVGYI   34 (45)
T ss_dssp             CCTTC-------CCSSEEEEET-TEEEEECCTTEE
T ss_pred             CcCCccCCCCcCCCCCEeecCC-CCEEEeCCCCCE
Confidence            35665432   22245999998 579999999984

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00032  Score=33.62  Aligned_cols=29  Identities=38%  Similarity=0.922  Sum_probs=22.7

Q ss_pred             CCCC-CCCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         32 SPCL-SHPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        32 ~~C~-~~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      ++|+ .+||.| |+|.+... +|.|.|..||.
T Consensus         2 dECsignpCGn-GTCtNviG-gFec~C~~GFe   31 (39)
T d1emoa2           2 DECSVGNPCGN-GTCKNVIG-GFECTCEEGFE   31 (39)
T ss_dssp             CGGGTTCSSSS-SCEEECSS-SEEECCSSSSC
T ss_pred             CccccCCccCC-ceeeeccc-ceEEeecCCcC
Confidence            4554 489976 59999984 59999999985

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00014  Score=36.24  Aligned_cols=30  Identities=30%  Similarity=0.792  Sum_probs=22.7

Q ss_pred             CCCCCC-CCCCCCCeEeeCCCCceEEeCCCCccC
Q psy11297         31 ESPCLS-HPCQNGATCQDEEDGLFECLCSPEFTG   63 (132)
Q Consensus        31 ~~~C~~-~pC~ngg~C~~~~~~~~~C~C~~g~~G   63 (132)
                      +++|+. ++|.  ..|++.. |+|+|.|++||..
T Consensus         2 idEC~~~~~C~--~~C~N~~-Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           2 IDECENGGFCS--GVCHNLP-GTFECICGPDSAL   32 (40)
T ss_dssp             CCHHHHCSSCS--SEEEECS-SSEEEEECSSSSC
T ss_pred             ccccCCCcCcc--CEeeCCC-CCeEeECCCCCee
Confidence            455543 5675  5999998 5699999999975

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0023  Score=31.98  Aligned_cols=23  Identities=35%  Similarity=0.911  Sum_probs=18.8

Q ss_pred             CCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         37 HPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        37 ~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      .+|.+  .|++.. ++|+|.|+.||.
T Consensus         9 ~~C~~--~C~n~~-Gsy~C~C~~Gy~   31 (42)
T d1nzia2           9 VPCSH--FCNNFI-GGYFCSCPPEYF   31 (42)
T ss_dssp             CCSSS--EEEEET-TEEEEECCTTCE
T ss_pred             cCCCC--EeecCC-CCEEEeCCCCCE
Confidence            46753  899998 579999999985

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00064  Score=33.92  Aligned_cols=30  Identities=30%  Similarity=0.759  Sum_probs=23.2

Q ss_pred             CCCCCCCeEee--CCCCceEEeCCCCccCCcccc
Q psy11297         37 HPCQNGATCQD--EEDGLFECLCSPEFTGYLCHT   68 (132)
Q Consensus        37 ~pC~ngg~C~~--~~~~~~~C~C~~g~~G~~C~~   68 (132)
                      +=|.| |+|.-  .. ....|.|+.||+|.+|+.
T Consensus         8 ~yCih-G~C~~i~~l-~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_           8 DFCIH-GECKYVKEL-RAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             TCCSS-EEECCBGGG-TBCCEEECTTEESTTCCE
T ss_pred             CEeEC-cEEeecCcC-CCceeECCCCCeecCccc
Confidence            34787 89963  33 258999999999999974

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0032  Score=31.09  Aligned_cols=29  Identities=34%  Similarity=0.829  Sum_probs=21.4

Q ss_pred             CCCCCC--CCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         31 ESPCLS--HPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        31 ~~~C~~--~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      +++|+.  ..|.  -.|++.. ++|+|.|++||.
T Consensus         2 ~neC~~~nggC~--h~C~n~~-g~~~C~C~~Gy~   32 (40)
T d3bpse1           2 TNECLDNNGGCS--HVCNDLK-IGYECLCPDGFQ   32 (40)
T ss_dssp             SCGGGTGGGGCS--SEEEECS-SSEEEECCTTCC
T ss_pred             cccCCCCCCCCc--CEEEcCC-CCEEEECCCCCE
Confidence            356654  3454  3899998 469999999995

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.014  Score=30.67  Aligned_cols=34  Identities=24%  Similarity=0.574  Sum_probs=24.7

Q ss_pred             CCCCCCeEeeC-CCCceEE-eCCCCccCCcccccCC
Q psy11297         38 PCQNGATCQDE-EDGLFEC-LCSPEFTGYLCHTRAP   71 (132)
Q Consensus        38 pC~ngg~C~~~-~~~~~~C-~C~~g~~G~~C~~~~~   71 (132)
                      ||.++++|... ..+...| .|+.+++|++|+.-.+
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~   37 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDD   37 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECT
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCccCcccccCC
Confidence            56677777643 2235778 5999999999998554

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.036  Score=27.03  Aligned_cols=31  Identities=26%  Similarity=0.803  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCCeEeeCCCCceEEeCCCCcc
Q psy11297         30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFT   62 (132)
Q Consensus        30 ~~~~C~~~pC~ngg~C~~~~~~~~~C~C~~g~~   62 (132)
                      .+|+|...+|+.  .|.+...+.|+|.|..||.
T Consensus         3 ~vDPCf~~~CE~--qCqP~~~~~Y~CiCaeGFa   33 (43)
T d1dx5i1           3 PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFA   33 (43)
T ss_dssp             CCCGGGGCCCSS--EEEECSSSCEEEECCTTEE
T ss_pred             ccccccCCCcce--eeeeCCCCcceEEeccccc
Confidence            468899888874  7887654569999999984

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.27  Score=24.89  Aligned_cols=25  Identities=32%  Similarity=0.804  Sum_probs=19.3

Q ss_pred             CeEeeCCCCceEEeCCCCcc----CCcccc
Q psy11297         43 ATCQDEEDGLFECLCSPEFT----GYLCHT   68 (132)
Q Consensus        43 g~C~~~~~~~~~C~C~~g~~----G~~C~~   68 (132)
                      ..|++.. ++|+|.|+.||.    |..|+.
T Consensus        11 ~~C~~~~-g~~~C~C~~Gy~L~~D~~tC~~   39 (50)
T d1autl2          11 HYCLEEV-GWRRCSCAPGYKLGDDLLQCHP   39 (50)
T ss_dssp             SEEEECS-SSEEEECCTTEEECTTSSCEEE
T ss_pred             cEeecCC-CCeEEECCCCCEECCCCCcccc
Confidence            3788887 469999999984    666754

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=0.2  Score=25.52  Aligned_cols=24  Identities=29%  Similarity=0.772  Sum_probs=19.4

Q ss_pred             eEeeCCCCceEEeCCCCcc----CCcccc
Q psy11297         44 TCQDEEDGLFECLCSPEFT----GYLCHT   68 (132)
Q Consensus        44 ~C~~~~~~~~~C~C~~g~~----G~~C~~   68 (132)
                      .|++.. ++|.|.|+.||.    |..|+.
T Consensus        13 ~C~n~~-g~~~C~C~~Gy~L~~D~~tC~~   40 (51)
T d2p3ua1          13 FCHEEQ-NSVVCSCARGYTLADNGKACIP   40 (51)
T ss_dssp             EEEEET-TEEEEECCTTEEECTTSSCEEE
T ss_pred             EeecCC-CCeEeEcCCCCEECCCCCcccc
Confidence            788887 469999999986    667764

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=0.24  Score=25.11  Aligned_cols=12  Identities=25%  Similarity=0.672  Sum_probs=10.3

Q ss_pred             CceEEeCCCCcc
Q psy11297         51 GLFECLCSPEFT   62 (132)
Q Consensus        51 ~~~~C~C~~g~~   62 (132)
                      ++|+|.|+.||.
T Consensus        29 ~~y~C~C~~G~~   40 (50)
T d1ijqa2          29 PKFTCACPDGML   40 (50)
T ss_dssp             CSEEEECCTTCE
T ss_pred             CCEEEeCCCCCE
Confidence            469999999985

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.12  Score=25.18  Aligned_cols=21  Identities=38%  Similarity=0.986  Sum_probs=17.4

Q ss_pred             CCeEeeCCCCceEEeCCCCccCCccc
Q psy11297         42 GATCQDEEDGLFECLCSPEFTGYLCH   67 (132)
Q Consensus        42 gg~C~~~~~~~~~C~C~~g~~G~~C~   67 (132)
                      .|+|..   +  .|.|.+||+|..|+
T Consensus        20 hG~C~~---G--~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          20 RGLCFC---G--KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HEEEET---T--EEEECTTCCTTTTC
T ss_pred             CCeEEC---C--EEEcCCCCcccCcc
Confidence            578863   3  79999999999997

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.95  E-value=0.34  Score=24.86  Aligned_cols=26  Identities=23%  Similarity=0.630  Sum_probs=19.4

Q ss_pred             eEeeCCCCceEEeCCCCcc----CCccccc
Q psy11297         44 TCQDEEDGLFECLCSPEFT----GYLCHTR   69 (132)
Q Consensus        44 ~C~~~~~~~~~C~C~~g~~----G~~C~~~   69 (132)
                      .|++..++.|.|.|+.||.    +..|...
T Consensus        12 ~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~   41 (53)
T d2bz6l1          12 YCSDHTGTKRSCRCHEGYSLLADGVSCTPT   41 (53)
T ss_dssp             EEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred             EeeeCCCCCEEeECCCCCEECCCCCcccCC
Confidence            6877765568999999984    5667643

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.89  E-value=0.28  Score=24.09  Aligned_cols=26  Identities=31%  Similarity=0.869  Sum_probs=19.7

Q ss_pred             CCCCCCeEeeCCCCceEEeC-CCCccCCcccc
Q psy11297         38 PCQNGATCQDEEDGLFECLC-SPEFTGYLCHT   68 (132)
Q Consensus        38 pC~ngg~C~~~~~~~~~C~C-~~g~~G~~C~~   68 (132)
                      .|...|+|+-   |  .|.| .++|.|+.||.
T Consensus        12 iCng~G~C~c---G--~C~C~~~gy~G~~Ce~   38 (43)
T d1jv2b5          12 LCSGRGKCEC---G--SCVCIQPGSYGDTCEK   38 (43)
T ss_dssp             GGGGTEEEET---T--EEEECCSSCBSTTSCB
T ss_pred             EECCCCEEEC---C--EeEeCCCCccCCcccc
Confidence            3666778872   3  7888 47999999985

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.26  E-value=0.53  Score=24.45  Aligned_cols=26  Identities=19%  Similarity=0.598  Sum_probs=19.7

Q ss_pred             eEeeCCCCceEEeCCCCcc----CCccccc
Q psy11297         44 TCQDEEDGLFECLCSPEFT----GYLCHTR   69 (132)
Q Consensus        44 ~C~~~~~~~~~C~C~~g~~----G~~C~~~   69 (132)
                      .|++...++|.|.|+.||.    |..|+..
T Consensus        13 ~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~   42 (57)
T d1rfnb_          13 FCKNSADNKVVCSCTEGYRLAENQKSCEPA   42 (57)
T ss_dssp             EEEECTTSCEEEECCTTEEECTTSSSEEEC
T ss_pred             EeeeCCCCCeEeECCCCCEECCCCCccccC
Confidence            7887754469999999985    6677653