Psyllid ID: psy11310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQSALTRVIGFYI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
HccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHEEEEc
Coil and Loop (DISEMBL)
VQQNLTEHYLELVKRVGTELRNLLTSVDNlvvmfppsahkEIEIAHKVLSKDMGELVACMKLAHtyshtsldnvyrkrgrrfssASQSALTRVIGFYI
Flexible Loop (DISEMBL)
VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTyshtsldnvyrkrgrrfssasqsaltrvigfyi
Low Complexity Region (SEG)
VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQSALTRVIGFYI
Disordered region (IsUnstruct)
******EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRK************LTRVIGF**
Disordered Region (DISOPRED)
***NLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKR******ASQSALTRVIGFYI
Disordered Region (DISEMBL)
VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQSALTRVIGFYI
Disordered Region (DISPRO)
*QQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR**SSASQSALTRVIGFYI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQSALTRVIGFYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
O35346	1055	Focal adhesion kinase 1 O	yes	N/A	0.795	0.073	0.461	2e-14
Q05397	1052	Focal adhesion kinase 1 O	yes	N/A	0.795	0.074	0.461	4e-14
P34152	1090	Focal adhesion kinase 1 O	yes	N/A	0.795	0.071	0.461	4e-14
Q91738	1068	Focal adhesion kinase 1 O	N/A	N/A	0.795	0.073	0.448	7e-13
Q00944	1053	Focal adhesion kinase 1 O	yes	N/A	0.795	0.074	0.448	1e-12
Q9QVP9	1009	Protein-tyrosine kinase 2	no	N/A	0.663	0.064	0.476	1e-08
P70600	1009	Protein-tyrosine kinase 2	no	N/A	0.673	0.065	0.454	4e-08
Q14289	1009	Protein-tyrosine kinase 2	no	N/A	0.663	0.064	0.461	4e-08

>sp|O35346|FAK1_RAT Focal adhesion kinase 1 OS=Rattus norvegicus GN=Ptk2 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 51/78 (65%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL++ M
Sbjct: 945  IQPAPPEEYVPMVKEVGLALRTLLATVDETIPILPASTHREIEMAQKLLNSDLGELISKM 1004

Query: 61   KLAHTYSHTSLDNVYRKR 78
            KLA  Y  TSL   Y+K+
Sbjct: 1005 KLAQQYVMTSLQQEYKKQ 1022

Non-receptor protein-tyrosine kinase that plays an essential role in regulating cell migration, adhesion, spreading, reorganization of the actin cytoskeleton, formation and disassembly of focal adhesions and cell protrusions, cell cycle progression, cell proliferation and apoptosis. Required for early embryonic development and placenta development. Required for embryonic angiogenesis, normal cardiomyocyte migration and proliferation, and normal heart development. Regulates axon growth and neuronal cell migration, axon branching and synapse formation; required for normal development of the nervous system. Plays a role in osteogenesis and differentiation of osteoblasts. Functions in integrin signal transduction, but also in signaling downstream of numerous growth factor receptors, G-protein coupled receptors (GPCR), EPHA2, netrin receptors and LDL receptors. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and the AKT1 signaling cascade. Promotes activation of MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling cascade. Promotes localized and transient activation of guanine nucleotide exchange factors (GEFs) and GTPase-activating proteins (GAPs), and thereby modulates the activity of Rho family GTPases. Signaling via CAS family members mediates activation of RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ACTN1, ARHGEF7, GRB7, RET and WASL. Promotes phosphorylation of PXN and STAT1; most likely PXN and STAT1 are phosphorylated by a SRC family kinase that is recruited to autophosphorylated PTK2/FAK1, rather than by PTK2/FAK1 itself. Promotes phosphorylation of BCAR1; GIT2 and SHC1; this requires both SRC and PTK2/FAK1. Promotes phosphorylation of BMX and PIK3R1. Isoform 2 (FRNK) does not contain a kinase domain and inhibits PTK2/FAK1 phosphorylation and signaling. Its enhanced expression can attenuate the nuclear accumulation of LPXN and limit its ability to enhance serum response factor (SRF)-dependent gene transcription.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 7EC: .EC: 1EC: 0EC: .EC: 2

>sp|Q05397|FAK1_HUMAN Focal adhesion kinase 1 OS=Homo sapiens GN=PTK2 PE=1 SV=2

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct: 942  IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 1001

Query: 61   KLAHTYSHTSLDNVYRKR 78
            KLA  Y  TSL   Y+K+
Sbjct: 1002 KLAQQYVMTSLQQEYKKQ 1019

Non-receptor protein-tyrosine kinase that plays an essential role in regulating cell migration, adhesion, spreading, reorganization of the actin cytoskeleton, formation and disassembly of focal adhesions and cell protrusions, cell cycle progression, cell proliferation and apoptosis. Required for early embryonic development and placenta development. Required for embryonic angiogenesis, normal cardiomyocyte migration and proliferation, and normal heart development. Regulates axon growth and neuronal cell migration, axon branching and synapse formation; required for normal development of the nervous system. Plays a role in osteogenesis and differentiation of osteoblasts. Functions in integrin signal transduction, but also in signaling downstream of numerous growth factor receptors, G-protein coupled receptors (GPCR), EPHA2, netrin receptors and LDL receptors. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and the AKT1 signaling cascade. Promotes activation of MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling cascade. Promotes localized and transient activation of guanine nucleotide exchange factors (GEFs) and GTPase-activating proteins (GAPs), and thereby modulates the activity of Rho family GTPases. Signaling via CAS family members mediates activation of RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ACTN1, ARHGEF7, GRB7, RET and WASL. Promotes phosphorylation of PXN and STAT1; most likely PXN and STAT1 are phosphorylated by a SRC family kinase that is recruited to autophosphorylated PTK2/FAK1, rather than by PTK2/FAK1 itself. Promotes phosphorylation of BCAR1; GIT2 and SHC1; this requires both SRC and PTK2/FAK1. Promotes phosphorylation of BMX and PIK3R1. Isoform 6 (FRNK) does not contain a kinase domain and inhibits PTK2/FAK1 phosphorylation and signaling. Its enhanced expression can attenuate the nuclear accumulation of LPXN and limit its ability to enhance serum response factor (SRF)-dependent gene transcription.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|P34152|FAK1_MOUSE Focal adhesion kinase 1 OS=Mus musculus GN=Ptk2 PE=1 SV=3

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            +Q    E Y+ +VK VG  LR LL +VD  +   P S H+EIE+A K+L+ D+GEL++ M
Sbjct: 980  IQPAPPEEYVPMVKEVGLALRTLLATVDETIPALPASTHREIEMAQKLLNSDLGELISKM 1039

Query: 61   KLAHTYSHTSLDNVYRKR 78
            KLA  Y  TSL   Y+K+
Sbjct: 1040 KLAQQYVMTSLQQEYKKQ 1057

Non-receptor protein-tyrosine kinase that plays an essential role in regulating cell migration, adhesion, spreading, reorganization of the actin cytoskeleton, formation and disassembly of focal adhesions and cell protrusions, cell cycle progression, cell proliferation and apoptosis. Required for early embryonic development and placenta development. Required for embryonic angiogenesis, normal cardiomyocyte migration and proliferation, and normal heart development. Regulates axon growth and neuronal cell migration, axon branching and synapse formation; required for normal development of the nervous system. Plays a role in osteogenesis and differentiation of osteoblasts. Functions in integrin signal transduction, but also in signaling downstream of numerous growth factor receptors, G-protein coupled receptors (GPCR), EPHA2, netrin receptors and LDL receptors. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and the AKT1 signaling cascade. Promotes activation of MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling cascade. Promotes localized and transient activation of guanine nucleotide exchange factors (GEFs) and GTPase-activating proteins (GAPs), and thereby modulates the activity of Rho family GTPases. Signaling via CAS family members mediates activation of RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ACTN1, ARHGEF7, GRB7, RET and WASL. Promotes phosphorylation of PXN and STAT1; most likely PXN and STAT1 are phosphorylated by a SRC family kinase that is recruited to autophosphorylated PTK2/FAK1, rather than by PTK2/FAK1 itself. Promotes phosphorylation of BCAR1; GIT2 and SHC1; this requires both SRC and PTK2/FAK1. Promotes phosphorylation of BMX and PIK3R1. Isoform 9 (FRNK) does not contain a kinase domain and inhibits PTK2/FAK1 phosphorylation and signaling. Its enhanced expression can attenuate the nuclear accumulation of LPXN and limit its ability to enhance serum response factor (SRF)-dependent gene transcription.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|Q91738|FAK1_XENLA Focal adhesion kinase 1 OS=Xenopus laevis GN=ptk2 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 958  IQPAPPEEYVPMVKGVGLALRTLLATVDETIPVLPASTHREIEMAQKLLNSDLAELINKM 1017

Query: 61   KLAHTYSHTSLDNVYRKR 78
            KLA  Y  TSL   Y+K+
Sbjct: 1018 KLAQQYVMTSLQQEYKKQ 1035

Non-receptor protein-tyrosine kinase implicated in signaling pathways involved in cell motility, proliferation and apoptosis. Activated by tyrosine-phosphorylation in response to either integrin clustering induced by cell adhesion or antibody cross-linking, or via G-protein coupled receptor (GPCR) occupancy by ligands such as bombesin or lysophosphatidic acid, or via LDL receptor occupancy. Microtubule-induced dephosphorylation at Tyr-397 is crucial for the induction of focal adhesion disassembly.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|Q00944|FAK1_CHICK Focal adhesion kinase 1 OS=Gallus gallus GN=PTK2 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 943  IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 1002

Query: 61   KLAHTYSHTSLDNVYRKR 78
            KLA  Y  TSL   Y+K+
Sbjct: 1003 KLAQQYVMTSLQQEYKKQ 1020

Non-receptor protein-tyrosine kinase that plays an essential role in regulating cell migration, adhesion, spreading, reorganization of the actin cytoskeleton, formation and disassembly of focal adhesions and cell protrusions, cell cycle progression, cell proliferation and apoptosis. Required for early embryonic development, embryonic angiogenesis, normal cardiomyocyte migration and proliferation, and normal heart development. Regulates axon growth and neuronal cell migration, axon branching and synapse formation; required for normal development of the nervous system. Plays a role in osteogenesis and differentiation of osteoblasts. Functions in integrin signal transduction, but also in signaling downstream of numerous growth factor receptors, G-protein coupled receptors (GPCR), ephrin receptors, netrin receptors and LDL receptors. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and the AKT1 signaling cascade. Promotes activation of MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling cascade. Promotes localized and transient activation of guanine nucleotide exchange factors (GEFs) and GTPase-activating proteins (GAPs), and thereby modulates the activity of Rho family GTPases. Signaling via CAS family members mediates activation of RAC1. Regulates P53/TP53 activity and stability. Phosphorylates SRC; this increases SRC kinase activity. Isoform 2 (FRNK) does not contain a kinase domain and inhibits PTK2/FAK1 phosphorylation and signaling.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|Q9QVP9|FAK2_MOUSE Protein-tyrosine kinase 2-beta OS=Mus musculus GN=Ptk2b PE=1 SV=2

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 42/65 (64%)

Query: 7   EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
           E Y+ +VK VG  LR L+ SVD+L+   P S+  EIE   K+L+KD+ EL+  MKLA   
Sbjct: 904 EDYVVVVKNVGLNLRKLIGSVDDLLPSLPASSRTEIEGTQKLLNKDLAELINKMKLAQQN 963

Query: 67  SHTSL 71
           + TSL
Sbjct: 964 AVTSL 968

Non-receptor protein-tyrosine kinase that regulates reorganization of the actin cytoskeleton, cell polarization, cell migration, adhesion, spreading and bone remodeling. Plays a role in the regulation of the humoral immune response, and is required for normal levels of marginal B-cells in the spleen and normal migration of splenic B-cells. Required for normal macrophage polarization and migration towards sites of inflammation. Regulates cytoskeleton rearrangement and cell spreading in T-cells, and contributes to the regulation of T-cell responses. Promotes osteoclastic bone resorption; this requires both PTK2B/PYK2 and SRC. May inhibit differentiation and activity of osteoprogenitor cells. Functions in signaling downstream of integrin and collagen receptors, immune receptors, G-protein coupled receptors (GPCR), cytokine, chemokine and growth factor receptors, and mediates responses to cellular stress. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and of the AKT1 signaling cascade. Promotes activation of NOS3. Regulates production of the cellular messenger cGMP. Promotes activation of the MAP kinase signaling cascade, including activation of MAPK1/ERK2, MAPK3/ERK1 and MAPK8/JNK1. Promotes activation of Rho family GTPases, such as RHOA and RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Acts as a scaffold, binding to both PDPK1 and SRC, thereby allowing SRC to phosphorylate PDPK1 at 'Tyr-9, 'Tyr-373', and 'Tyr-376' (By similarity). Promotes phosphorylation of NMDA receptors by SRC family members, and thereby contributes to the regulation of NMDA receptor ion channel activity and intracellular Ca(2+) levels. May also regulate potassium ion transport by phosphorylation of potassium channel subunits. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ASAP1, NPHP1, KCNA2 and SHC1. Promotes phosphorylation of ASAP2, RHOU and PXN; this requires both SRC and PTK2/PYK2.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|P70600|FAK2_RAT Protein-tyrosine kinase 2-beta OS=Rattus norvegicus GN=Ptk2b PE=1 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%)

Query: 6   TEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHT 65
            E Y+ +VK VG  LR L+ SVD+L+   P S+  EIE   K+L+KD+ EL+  M+LA  
Sbjct: 903 PEEYVVVVKNVGLNLRKLIGSVDDLLPSLPASSRTEIEGTQKLLNKDLAELINKMRLAQQ 962

Query: 66  YSHTSL 71
            + TSL
Sbjct: 963 NAVTSL 968

Non-receptor protein-tyrosine kinase that regulates reorganization of the actin cytoskeleton, cell polarization, cell migration, adhesion, spreading and bone remodeling. Plays a role in the regulation of the humoral immune response, and is required for normal levels of marginal B-cells in the spleen and normal migration of splenic B-cells. Required for normal macrophage polarization and migration towards sites of inflammation. Regulates cytoskeleton rearrangement and cell spreading in T-cells, and contributes to the regulation of T-cell responses. Promotes osteoclastic bone resorption; this requires both PTK2B/PYK2 and SRC. May inhibit differentiation and activity of osteoprogenitor cells. Functions in signaling downstream of integrin and collagen receptors, immune receptors, G-protein coupled receptors (GPCR), cytokine, chemokine and growth factor receptors, and mediates responses to cellular stress. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and of the AKT1 signaling cascade. Promotes activation of NOS3. Regulates production of the cellular messenger cGMP. Promotes activation of the MAP kinase signaling cascade, including activation of MAPK1/ERK2, MAPK3/ERK1 and MAPK8/JNK1. Promotes activation of Rho family GTPases, such as RHOA and RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Acts as a scaffold, binding to both PDPK1 and SRC, thereby allowing SRC to phosphorylate PDPK1 at 'Tyr-9, 'Tyr-373', and 'Tyr-376' (By similarity). Promotes phosphorylation of NMDA receptors by SRC family members, and thereby contributes to the regulation of NMDA receptor ion channel activity and intracellular Ca(2+) levels. May also regulate potassium ion transport by phosphorylation of potassium channel subunits. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ASAP1, NPHP1, KCNA2 and SHC1. Promotes phosphorylation of ASAP2, RHOU and PXN; this requires both SRC and PTK2/PYK2.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

>sp|Q14289|FAK2_HUMAN Protein-tyrosine kinase 2-beta OS=Homo sapiens GN=PTK2B PE=1 SV=2

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query: 7   EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
           E Y+ +VK VG  LR L+ SVD+L+   P S+  EIE   K+L+KD+ EL+  M+LA   
Sbjct: 904 EGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQN 963

Query: 67  SHTSL 71
           + TSL
Sbjct: 964 AVTSL 968

Non-receptor protein-tyrosine kinase that regulates reorganization of the actin cytoskeleton, cell polarization, cell migration, adhesion, spreading and bone remodeling. Plays a role in the regulation of the humoral immune response, and is required for normal levels of marginal B-cells in the spleen and normal migration of splenic B-cells. Required for normal macrophage polarization and migration towards sites of inflammation. Regulates cytoskeleton rearrangement and cell spreading in T-cells, and contributes to the regulation of T-cell responses. Promotes osteoclastic bone resorption; this requires both PTK2B/PYK2 and SRC. May inhibit differentiation and activity of osteoprogenitor cells. Functions in signaling downstream of integrin and collagen receptors, immune receptors, G-protein coupled receptors (GPCR), cytokine, chemokine and growth factor receptors, and mediates responses to cellular stress. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and of the AKT1 signaling cascade. Promotes activation of NOS3. Regulates production of the cellular messenger cGMP. Promotes activation of the MAP kinase signaling cascade, including activation of MAPK1/ERK2, MAPK3/ERK1 and MAPK8/JNK1. Promotes activation of Rho family GTPases, such as RHOA and RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Acts as a scaffold, binding to both PDPK1 and SRC, thereby allowing SRC to phosphorylate PDPK1 at 'Tyr-9, 'Tyr-373', and 'Tyr-376'. Promotes phosphorylation of NMDA receptors by SRC family members, and thereby contributes to the regulation of NMDA receptor ion channel activity and intracellular Ca(2+) levels. May also regulate potassium ion transport by phosphorylation of potassium channel subunits. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ASAP1, NPHP1, KCNA2 and SHC1. Promotes phosphorylation of ASAP2, RHOU and PXN; this requires both SRC and PTK2/PYK2.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
321479305	1147	hypothetical protein DAPPUDRAFT_309895 [	0.785	0.067	0.675	2e-22
321479135	199	hypothetical protein DAPPUDRAFT_39328 [D	0.785	0.386	0.675	3e-22
321450388	172	hypothetical protein DAPPUDRAFT_67995 [D	0.785	0.447	0.675	4e-22
322778771	1761	hypothetical protein SINV_03994 [Solenop	0.785	0.043	0.688	1e-21
328713996	1242	PREDICTED: focal adhesion kinase 1-like	0.785	0.061	0.675	2e-21
332027624	210	Focal adhesion kinase 1 [Acromyrmex echi	0.785	0.366	0.662	3e-21
321451398	149	hypothetical protein DAPPUDRAFT_67424 [D	0.785	0.516	0.662	4e-21
307176717	1849	Focal adhesion kinase 1 [Camponotus flor	0.785	0.041	0.675	7e-21
332027625	1563	Focal adhesion kinase 1 [Acromyrmex echi	0.785	0.049	0.662	1e-20
195028308	1189	GH21684 [Drosophila grimshawi] gi|193903	0.785	0.064	0.636	2e-20

>gi|321479305|gb|EFX90261.1| hypothetical protein DAPPUDRAFT_309895 [Daphnia pulex]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 63/77 (81%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            VQQ   E+Y++LVK+VG ELR LLTSVD LV  FPPS H+E+E+AHKVLSKDM ELV+ +
Sbjct: 1011 VQQAKIENYVDLVKKVGLELRTLLTSVDQLVPHFPPSTHREVEMAHKVLSKDMAELVSAL 1070

Query: 61   KLAHTYSHTSLDNVYRK 77
            KLA  YS+T+LDN YRK
Sbjct: 1071 KLAERYSNTTLDNEYRK 1087

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479135|gb|EFX90091.1| hypothetical protein DAPPUDRAFT_39328 [Daphnia pulex]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 63/77 (81%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           VQQ   E+Y++LVK+VG ELR LLTSVD LV  FPPS H+E+E+AHKVLSKDM ELV+ +
Sbjct: 63  VQQAKIENYVDLVKKVGLELRTLLTSVDQLVPHFPPSTHREVEMAHKVLSKDMAELVSAL 122

Query: 61  KLAHTYSHTSLDNVYRK 77
           KLA  YS+T+LDN YRK
Sbjct: 123 KLAERYSNTTLDNEYRK 139

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321450388|gb|EFX62424.1| hypothetical protein DAPPUDRAFT_67995 [Daphnia pulex]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 63/77 (81%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           VQQ   E+Y++LVK+VG ELR LLTSVD LV  FPPS H+E+E+AHKVLSKDM ELV+ +
Sbjct: 36  VQQAKIENYVDLVKKVGLELRTLLTSVDQLVPHFPPSTHREVEMAHKVLSKDMAELVSAL 95

Query: 61  KLAHTYSHTSLDNVYRK 77
           KLA  YS+T+LDN YRK
Sbjct: 96  KLAERYSNTTLDNEYRK 112

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778771|gb|EFZ09187.1| hypothetical protein SINV_03994 [Solenopsis invicta]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 62/77 (80%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            VQQ+  + YLELV+RVG ELR LL+SVD LV + P SAH+E+E+AHKVLSKDM ELVA M
Sbjct: 1483 VQQSKADQYLELVRRVGIELRALLSSVDVLVKILPISAHREVEMAHKVLSKDMAELVAAM 1542

Query: 61   KLAHTYSHTSLDNVYRK 77
            KLA TYS T+LD  YRK
Sbjct: 1543 KLAQTYSATTLDAEYRK 1559

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713996|ref|XP_001951286.2| PREDICTED: focal adhesion kinase 1-like [Acyrthosiphon pisum]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 61/77 (79%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            VQQN T+ YLELVK VG +LR LLTSVD+LV  FP SAHK++E+AHKVLSKDM ELV  M
Sbjct: 1114 VQQNQTDRYLELVKEVGLQLRALLTSVDSLVPYFPQSAHKQVEMAHKVLSKDMAELVNAM 1173

Query: 61   KLAHTYSHTSLDNVYRK 77
            KLA  Y HT++D +Y K
Sbjct: 1174 KLAQNYCHTAVDYLYSK 1190

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027624|gb|EGI67694.1| Focal adhesion kinase 1 [Acromyrmex echinatior]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           VQQ+  + YLELV+RVG ELR LL+SVD LV + P SAH+E+E+AHKVLSKDM ELV+ M
Sbjct: 34  VQQSKADQYLELVRRVGIELRALLSSVDVLVEILPISAHREVEMAHKVLSKDMAELVSAM 93

Query: 61  KLAHTYSHTSLDNVYRK 77
           KLA +YS T+LD  YRK
Sbjct: 94  KLAQSYSATTLDAEYRK 110

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321451398|gb|EFX63065.1| hypothetical protein DAPPUDRAFT_67424 [Daphnia pulex]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           VQQ   E+Y++LVK+VG ELR LLTSVD LV  FPPS H+E+E+A KVLSKDM ELV+ +
Sbjct: 33  VQQAKIENYVDLVKKVGLELRTLLTSVDQLVPHFPPSTHREVEMADKVLSKDMAELVSAL 92

Query: 61  KLAHTYSHTSLDNVYRK 77
           KLA  YS+T+LDN YRK
Sbjct: 93  KLAERYSNTTLDNEYRK 109

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176717|gb|EFN66133.1| Focal adhesion kinase 1 [Camponotus floridanus]

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 61/77 (79%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            VQQ+  + YLELV+RVG ELR LL+SVD LV + P SAH+E+E+AHKVLSKDM ELVA M
Sbjct: 1568 VQQSKADQYLELVRRVGIELRALLSSVDVLVEILPISAHREVEMAHKVLSKDMAELVAAM 1627

Query: 61   KLAHTYSHTSLDNVYRK 77
            KLA  YS T+LD  YRK
Sbjct: 1628 KLAQNYSATTLDAEYRK 1644

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027625|gb|EGI67695.1| Focal adhesion kinase 1 [Acromyrmex echinatior]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            VQQ+  + YLELV+RVG ELR LL+SVD LV + P SAH+E+E+AHKVLSKDM ELV+ M
Sbjct: 1282 VQQSKADQYLELVRRVGIELRALLSSVDVLVEILPISAHREVEMAHKVLSKDMAELVSAM 1341

Query: 61   KLAHTYSHTSLDNVYRK 77
            KLA +YS T+LD  YRK
Sbjct: 1342 KLAQSYSATTLDAEYRK 1358

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028308|ref|XP_001987018.1| GH21684 [Drosophila grimshawi] gi|193903018|gb|EDW01885.1| GH21684 [Drosophila grimshawi]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 61/77 (79%)

Query: 1    VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
            V+++  + YL LVK VG ELRNLL SVDN+ ++FPP A KE+E+AHKVLSKDM ELV+ M
Sbjct: 964  VEKSHVDGYLSLVKNVGVELRNLLKSVDNISILFPPQALKEVEMAHKVLSKDMHELVSAM 1023

Query: 61   KLAHTYSHTSLDNVYRK 77
             LAH Y+ T+LDN YRK
Sbjct: 1024 HLAHQYNDTTLDNEYRK 1040

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0020440	1500	Fak "Focal adhesion kinase" [D	0.785	0.051	0.610	1.1e-17
UNIPROTKB|E5RHD8	115	PTK2 "Focal adhesion kinase 1"	0.795	0.678	0.461	7.9e-14
UNIPROTKB|B4DWJ1	362	PTK2 "Focal adhesion kinase 1"	0.795	0.215	0.461	2.8e-13
UNIPROTKB|E9PEI4	680	PTK2 "Focal adhesion kinase 1"	0.795	0.114	0.461	1e-12
UNIPROTKB|Q8N9D7	720	PTK2 "cDNA FLJ37680 fis, clone	0.795	0.108	0.461	1.1e-12
UNIPROTKB|H0YB16	724	PTK2 "Focal adhesion kinase 1"	0.795	0.107	0.461	1.1e-12
RGD|3443	1055	Ptk2 "protein tyrosine kinase	0.795	0.073	0.461	1.2e-12
UNIPROTKB|H0YBZ1	753	PTK2 "Focal adhesion kinase 1"	0.795	0.103	0.461	1.2e-12
UNIPROTKB|Q8IYN9	1006	PTK2 "Focal adhesion kinase 1"	0.795	0.077	0.461	1.8e-12
UNIPROTKB|H0YBP1	1017	PTK2 "Focal adhesion kinase 1"	0.795	0.076	0.461	1.8e-12

FB|FBgn0020440 Fak "Focal adhesion kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 47/77 (61%), Positives = 60/77 (77%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             V++  TE YLELVK VG +LRNLLTSVD + ++FP  A KE+++AH+VLSKDM ELV+ M
Sbjct:  1273 VEKANTEGYLELVKNVGVKLRNLLTSVDKISIIFPAQALKEVQMAHQVLSKDMHELVSAM 1332

Query:    61 KLAHTYSHTSLDNVYRK 77
             +LA  YS T+LD  YRK
Sbjct:  1333 RLAQQYSDTTLDCEYRK 1349

GO:0004713 "protein tyrosine kinase activity" evidence=IEA;ISS;NAS

GO:0007229 "integrin-mediated signaling pathway" evidence=ISS

GO:0005925 "focal adhesion" evidence=IEA;ISS

GO:0004715 "non-membrane spanning protein tyrosine kinase activity" evidence=ISS

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007172 "signal complex assembly" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0061176 "type Ib terminal bouton" evidence=IDA

GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0061177 "type Is terminal bouton" evidence=IDA

UNIPROTKB|E5RHD8 PTK2 "Focal adhesion kinase 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct:     5 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 64

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:    65 KLAQQYVMTSLQQEYKKQ 82

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007172 "signal complex assembly" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005178 "integrin binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0007254 "JNK cascade" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IEA

GO:0009749 "response to glucose stimulus" evidence=IEA

GO:0010243 "response to organic nitrogen" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0014911 "positive regulation of smooth muscle cell migration" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0021955 "central nervous system neuron axonogenesis" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0030644 "cellular chloride ion homeostasis" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043542 "endothelial cell migration" evidence=IEA

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IEA

GO:0045909 "positive regulation of vasodilation" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0046685 "response to arsenic-containing substance" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IEA

GO:0050771 "negative regulation of axonogenesis" evidence=IEA

GO:0050806 "positive regulation of synaptic transmission" evidence=IEA

GO:0051964 "negative regulation of synapse assembly" evidence=IEA

GO:0060252 "positive regulation of glial cell proliferation" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|B4DWJ1 PTK2 "Focal adhesion kinase 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct:   252 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 311

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:   312 KLAQQYVMTSLQQEYKKQ 329

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0007172 "signal complex assembly" evidence=IEA

UNIPROTKB|E9PEI4 PTK2 "Focal adhesion kinase 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct:   570 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 629

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:   630 KLAQQYVMTSLQQEYKKQ 647

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0007172 "signal complex assembly" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8N9D7 PTK2 "cDNA FLJ37680 fis, clone BRHIP2012923, highly similar to FOCAL ADHESION KINASE 1 (EC 2.7.1.112)" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct:   610 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 669

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:   670 KLAQQYVMTSLQQEYKKQ 687

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0007172 "signal complex assembly" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H0YB16 PTK2 "Focal adhesion kinase 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct:   614 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 673

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:   674 KLAQQYVMTSLQQEYKKQ 691

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0007172 "signal complex assembly" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|3443 Ptk2 "protein tyrosine kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/78 (46%), Positives = 51/78 (65%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL++ M
Sbjct:   945 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPILPASTHREIEMAQKLLNSDLGELISKM 1004

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:  1005 KLAQQYVMTSLQQEYKKQ 1022

GO:0000165 "MAPK cascade" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA;ISO

GO:0001525 "angiogenesis" evidence=IEA;ISO

GO:0001568 "blood vessel development" evidence=ISO

GO:0001570 "vasculogenesis" evidence=IEA;ISO

GO:0001764 "neuron migration" evidence=IEA;ISO

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISO;ISS

GO:0003779 "actin binding" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=ISO;TAS

GO:0004715 "non-membrane spanning protein tyrosine kinase activity" evidence=ISO;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005178 "integrin binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0005925 "focal adhesion" evidence=ISO;IDA;TAS

GO:0007172 "signal complex assembly" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=ISO;ISS

GO:0007254 "JNK cascade" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=ISO;ISS

GO:0008360 "regulation of cell shape" evidence=ISO;ISS

GO:0008432 "JUN kinase binding" evidence=IEA;ISO

GO:0009612 "response to mechanical stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0010033 "response to organic substance" evidence=IEP

GO:0010243 "response to organic nitrogen" evidence=IEP

GO:0014068 "positive regulation of phosphatidylinositol 3-kinase cascade" evidence=ISO;ISS

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0014704 "intercalated disc" evidence=IDA

GO:0014911 "positive regulation of smooth muscle cell migration" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0016604 "nuclear body" evidence=IDA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=ISO;ISS

GO:0019901 "protein kinase binding" evidence=ISO

GO:0021955 "central nervous system neuron axonogenesis" evidence=IEA;ISO

GO:0022408 "negative regulation of cell-cell adhesion" evidence=IEA;ISO

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030198 "extracellular matrix organization" evidence=IEA;ISO

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0030335 "positive regulation of cell migration" evidence=ISO;IMP

GO:0030336 "negative regulation of cell migration" evidence=IMP

GO:0030644 "cellular chloride ion homeostasis" evidence=IMP

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0032403 "protein complex binding" evidence=IPI

GO:0033628 "regulation of cell adhesion mediated by integrin" evidence=ISO;ISS

GO:0040023 "establishment of nucleus localization" evidence=IEA;ISO

GO:0042127 "regulation of cell proliferation" evidence=ISO;ISS

GO:0042169 "SH2 domain binding" evidence=IEA;ISO

GO:0042383 "sarcolemma" evidence=IDA

GO:0042493 "response to drug" evidence=IEP

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0043542 "endothelial cell migration" evidence=IEA;ISO

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IPI

GO:0045444 "fat cell differentiation" evidence=IEP

GO:0045667 "regulation of osteoblast differentiation" evidence=ISO;ISS

GO:0045785 "positive regulation of cell adhesion" evidence=IMP

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO;ISS

GO:0045909 "positive regulation of vasodilation" evidence=IMP

GO:0046621 "negative regulation of organ growth" evidence=IEA;ISO

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046777 "protein autophosphorylation" evidence=ISO;ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=IMP

GO:0050766 "positive regulation of phagocytosis" evidence=IMP

GO:0050771 "negative regulation of axonogenesis" evidence=IEA;ISO

GO:0050806 "positive regulation of synaptic transmission" evidence=IMP

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=ISO;ISS

GO:0051964 "negative regulation of synapse assembly" evidence=IEA;ISO

GO:0060252 "positive regulation of glial cell proliferation" evidence=IMP

GO:0060396 "growth hormone receptor signaling pathway" evidence=IEA;ISO

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:2000811 "negative regulation of anoikis" evidence=IEA;ISO

UNIPROTKB|H0YBZ1 PTK2 "Focal adhesion kinase 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct:   643 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 702

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:   703 KLAQQYVMTSLQQEYKKQ 720

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0007172 "signal complex assembly" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8IYN9 PTK2 "Focal adhesion kinase 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct:   896 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 955

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:   956 KLAQQYVMTSLQQEYKKQ 973

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007172 "signal complex assembly" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|H0YBP1 PTK2 "Focal adhesion kinase 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
             +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct:   907 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 966

Query:    61 KLAHTYSHTSLDNVYRKR 78
             KLA  Y  TSL   Y+K+
Sbjct:   967 KLAQQYVMTSLQQEYKKQ 984

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007172 "signal complex assembly" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam03623	139	pfam03623, Focal_AT, Focal adhesion targeting regi	3e-28

>gnl|CDD|146323 pfam03623, Focal_AT, Focal adhesion targeting region

 Score = 99.0 bits (247), Expect = 3e-28
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           VQ+  +E Y+ LVK VG  LR LL SVD ++   P S H EIE+A K+L+KD+GEL++ M
Sbjct: 29  VQKLPSEEYVNLVKNVGLALRKLLGSVDEILPSLPASTHTEIEMAQKLLNKDLGELISKM 88

Query: 61  KLAHTYSHTSLDNVYRK 77
           +LA  Y+ TSLD  Y+K
Sbjct: 89  RLAQQYAVTSLDEEYKK 105

Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signaling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal 'focal adhesion targeting' (FAT) region is necessary and sufficient for localising FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not. Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF03623	139	Focal_AT: Focal adhesion targeting region; InterPr	100.0
KOG4257|consensus	974		99.98
PF15508	95	NAAA-beta: beta subunit of N-acylethanolamine-hydr	88.97

>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins

Probab=100.00  E-value=2.7e-39  Score=236.61  Aligned_cols=85  Identities=48%  Similarity=0.725  Sum_probs=82.4

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310          1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR   80 (98)
Q Consensus         1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML   80 (98)
                      |+.++||+|+++||+||.+||+||++||+++|+||+|+|+|||||||+|||||+|||++||+||||++|||++||||+||
T Consensus        29 v~~~~~~~y~~~VK~VG~~Lr~Ll~sVd~~~~~l~~s~~~EVema~klL~~DM~eLi~~mklaq~~~~ttl~~eyrr~ml  108 (139)
T PF03623_consen   29 VQTAKPEEYVDLVKNVGLALRDLLTSVDQILPSLPSSVRREVEMAHKLLSKDMAELISAMKLAQQNSNTTLDEEYRRQML  108 (139)
T ss_dssp             TTTSSHHHHHHHHHHHHHHHHHHHHHHHHHGGGSHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             hccCChHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q psy11310         81 RFSSA   85 (98)
Q Consensus        81 ~~~~~   85 (98)
                      +++-.
T Consensus       109 ~aah~  113 (139)
T PF03623_consen  109 SAAHV  113 (139)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98654

The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....

>KOG4257|consensus

Probab=99.98  E-value=8.4e-33  Score=243.46  Aligned_cols=86  Identities=42%  Similarity=0.582  Sum_probs=83.3

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310          1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR   80 (98)
Q Consensus         1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML   80 (98)
                      |++++||+|+.+||+||+.||+||+|||.+.|.||+++|+|||||||+|||||+||||+|||||||+.|||++|||||||
T Consensus       862 v~~a~pegyl~~VKeVgl~LR~ll~svd~~~~~lpast~tevemtqkllnkDm~elinkMrlaQq~~~tsl~~e~rrqml  941 (974)
T KOG4257|consen  862 VEKANPEGYLHSVKEVGLQLRELLISVDGMRPRLPASTQTEVEMTQKLLNKDMKELINKMRLAQQNGHTSLYNEYRRQML  941 (974)
T ss_pred             cccCCchhhhHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccc
Q psy11310         81 RFSSAS   86 (98)
Q Consensus        81 ~~~~~~   86 (98)
                      +++-+-
T Consensus       942 taah~L  947 (974)
T KOG4257|consen  942 TAAHEL  947 (974)
T ss_pred             HHHHHH
Confidence            987553

>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase

Probab=88.97  E-value=1.7  Score=28.90  Aligned_cols=74  Identities=18%  Similarity=0.326  Sum_probs=48.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhhhhcc-CCC-chhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310          3 QNLTEHYLELVKRVGTELRNLLTSVDNLVVM-FPP-SAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR   80 (98)
Q Consensus         3 ~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~-~P~-s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML   80 (98)
                      ..+-|.|..+++.-+-++|.+...++++++. +|. ..+.-|+           .++..|  .     -.+.++|...|.
T Consensus        12 lpP~eRw~~i~~~~k~~i~~l~~~~~~~~~~~~~~~~~~~~v~-----------~~~~~l--~-----~~~~~~~~~Eir   73 (95)
T PF15508_consen   12 LPPEERWVQIAKDYKDEIRELIEVLKDLLQSFVPSGKVLDFVD-----------KLLPHL--L-----RYLPQPYAEEIR   73 (95)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH-----------HHHHHH--H-----HhCCHHHHHHHH
Confidence            4567889999999999999999999999886 455 3433332           111111  1     234677888888


Q ss_pred             hhhccchhhhhhHh
Q psy11310         81 RFSSASQSALTRVI   94 (98)
Q Consensus        81 ~~~~~~~~~~~~~~   94 (98)
                      ..|.++---+.-++
T Consensus        74 GIA~~~gi~l~~iv   87 (95)
T PF15508_consen   74 GIAKAAGIPLGDIV   87 (95)
T ss_pred             HHHHHhCCCHHHHH
Confidence            77766544444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
3s9o_A	164	The Focal Adhesion Targeting (Fat) Domain Of The Fo		2e-15
1ow6_A	161	Paxillin Ld4 Motif Bound To The Focal Adhesion Targ		2e-15
1k04_A	162	Crystal Structure Of The Focal Adhesion Targeting D		2e-15
1k40_A	126	Crystal Structure Of The Fat Domain Of Focal Adhesi		2e-15
1pv3_A	146	Nmr Solution Structure Of The Avian Fat-Domain Of F		5e-14
1qvx_A	134	Solution Structure Of The Fat Domain Of Focal Adhes		5e-14
1ktm_A	139	Solution Structure Of Fat Domain Of Focal Adhesion		5e-14
2l6h_A	180	Fat Domain Of Focal Adhesion Kinase Tethered To Ld4		5e-14
2l6f_A	215	Nmr Solution Structure Of Fat Domain Of Fak Complex		6e-14
2l6g_A	176	Fat-Ld2 Double Labeled Construct With Free Ld4 Pept		6e-14
2lk4_A	135	Structural And Mechanistic Insights Into The Intera		2e-09
3gm1_A	153	Crystal Structure Of The Focal Adhesion Targeting (		3e-09
3u3c_A	139	Structural Basis For The Interaction Of Pyk2 Pat Do		3e-09

>pdb|3S9O|A Chain A, The Focal Adhesion Targeting (Fat) Domain Of The Focal Adhesion Kinase Showing N-Terminal Interactions In Cis Length = 164

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct: 54  IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 113
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 114 KLAQQYVMTSLQQEYKKQ 131

>pdb|1OW6|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting (Fat) Domain Of The Focal Adhesion Kinase Length = 161

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct: 51  IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 110
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 111 KLAQQYVMTSLQQEYKKQ 128

>pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain Of Focal Adhesion Kinase Length = 162

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct: 52  IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 111
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 112 KLAQQYVMTSLQQEYKKQ 129

>pdb|1K40|A Chain A, Crystal Structure Of The Fat Domain Of Focal Adhesion Kinase Length = 126

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1  VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
          +Q    E Y+ +VK VG  LR LL +VD  +   P S H+EIE+A K+L+ D+GEL++ M
Sbjct: 22 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPALPASTHREIEMAQKLLNSDLGELISKM 81
Query: 61 KLAHTYSHTSLDNVYRKR 78
          KLA  Y  TSL   Y+K+
Sbjct: 82 KLAQQYVMTSLQQEYKKQ 99

>pdb|1PV3|A Chain A, Nmr Solution Structure Of The Avian Fat-Domain Of Focal Adhesion Kinase Length = 146

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 36  IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 95
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 96  KLAQQYVMTSLQQEYKKQ 113

>pdb|1QVX|A Chain A, Solution Structure Of The Fat Domain Of Focal Adhesion Kinase Length = 134

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 24  IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 83
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 84  KLAQQYVMTSLQQEYKKQ 101

>pdb|1KTM|A Chain A, Solution Structure Of Fat Domain Of Focal Adhesion Kinase Length = 139

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 29  IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 89  KLAQQYVMTSLQQEYKKQ 106

>pdb|2L6H|A Chain A, Fat Domain Of Focal Adhesion Kinase Tethered To Ld4 Motif Of Paxillin Via Ggs Linker Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 29  IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 89  KLAQQYVMTSLQQEYKKQ 106

>pdb|2L6F|A Chain A, Nmr Solution Structure Of Fat Domain Of Fak Complexed With Ld2 And Ld4 Motifs Of Paxillin Length = 215

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 29  IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 89  KLAQQYVMTSLQQEYKKQ 106

>pdb|2L6G|A Chain A, Fat-Ld2 Double Labeled Construct With Free Ld4 Peptide Length = 176

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 29  IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61  KLAHTYSHTSLDNVYRKR 78
           KLA  Y  TSL   Y+K+
Sbjct: 89  KLAQQYVMTSLQQEYKKQ 106

>pdb|2LK4|A Chain A, Structural And Mechanistic Insights Into The Interaction Between Pat Pyk2 And Paxillin Ld Motif Length = 135

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 7  EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
          E Y+ +VK VG  LR L+ SVD+L+   P S+  EIE   K+L+KD+ EL+  M+LA   
Sbjct: 34 EGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQN 93
Query: 67 SHTSL 71
          + TSL
Sbjct: 94 AVTSL 98

>pdb|3GM1|A Chain A, Crystal Structure Of The Focal Adhesion Targeting (Fat) Domain Of Pyk2 In Complex With Paxillin Ld4 Motif-Derived Peptides Length = 153

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 7   EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
           E Y+ +VK VG  LR L+ SVD+L+   P S+  EIE   K+L+KD+ EL+  M+LA   
Sbjct: 48  EGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQN 107
Query: 67  SHTSL 71
           + TSL
Sbjct: 108 AVTSL 112

>pdb|3U3C|A Chain A, Structural Basis For The Interaction Of Pyk2 Pat Domain With Paxillin Ld Motifs Length = 139

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 7   EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
           E Y+ +VK VG  LR L+ SVD+L+   P S+  EIE   K+L+KD+ EL+  M+LA   
Sbjct: 38  EGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQN 97
Query: 67  SHTSL 71
           + TSL
Sbjct: 98  AVTSL 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2l6f_A	215	Focal adhesion kinase 1, linker1, paxillin, linke	3e-27
1k04_A	162	FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN f	5e-27
3gm3_A	153	Protein tyrosine kinase 2 beta; four-helix bundle,	4e-26

>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A Length = 215

 Score = 98.0 bits (243), Expect = 3e-27
 Identities = 35/77 (45%), Positives = 48/77 (62%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+ EL+  M
Sbjct: 29  IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88

Query: 61  KLAHTYSHTSLDNVYRK 77
           KLA  Y  TSL   Y+K
Sbjct: 89  KLAQQYVMTSLQQEYKK 105

>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A Length = 162

 Score = 96.1 bits (238), Expect = 5e-27
 Identities = 36/77 (46%), Positives = 49/77 (63%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct: 52  IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 111

Query: 61  KLAHTYSHTSLDNVYRK 77
           KLA  Y  TSL   Y+K
Sbjct: 112 KLAQQYVMTSLQQEYKK 128

>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} PDB: 3gm1_A 3gm2_A Length = 153

 Score = 93.4 bits (231), Expect = 4e-26
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           + Q   E Y+ +VK VG  LR L+ SVD+L+   P S+  EIE   K+L+KD+ EL+  M
Sbjct: 42  LAQLPPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKM 101

Query: 61  KLAHTYSHTSLDNVYRK 77
           +LA   + TSL    ++
Sbjct: 102 RLAQQNAVTSLSEECKR 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
3gm3_A	153	Protein tyrosine kinase 2 beta; four-helix bundle,	100.0
1k04_A	162	FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN f	100.0
2l6f_A	215	Focal adhesion kinase 1, linker1, paxillin, linke	100.0

>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A

Probab=100.00  E-value=8.6e-43  Score=258.08  Aligned_cols=85  Identities=38%  Similarity=0.507  Sum_probs=82.4

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310          1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR   80 (98)
Q Consensus         1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML   80 (98)
                      |+.++||+|+++||+||++||+||+|||+++|+||+|+|||||||||+|||||+||||+|||||||++|||++||||+||
T Consensus        42 v~~a~~e~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp~s~~~EIema~k~L~kDM~eLIs~MkLAqq~~~TtL~eEyrr~ML  121 (153)
T 3gm3_A           42 LAQLPPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQNAVTSLSEECKRQML  121 (153)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             hhhcChHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q psy11310         81 RFSSA   85 (98)
Q Consensus        81 ~~~~~   85 (98)
                      +++=+
T Consensus       122 saaH~  126 (153)
T 3gm3_A          122 TASHT  126 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98644

>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A

Probab=100.00  E-value=1.2e-41  Score=253.52  Aligned_cols=86  Identities=43%  Similarity=0.672  Sum_probs=82.7

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310          1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR   80 (98)
Q Consensus         1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML   80 (98)
                      |++++||+|+++||+||++||+||+|||+++|+||+|+|||||||||+|||||+|||++|||||||++|||++||||+||
T Consensus        52 v~~a~~eey~~~VK~VGl~LR~Ll~sVd~~~~~lp~s~~rEVema~k~L~kDM~eLis~mklaq~~~~TtL~~EyRk~mL  131 (162)
T 1k04_A           52 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKKQML  131 (162)
T ss_dssp             HSCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHH
T ss_pred             hhhcChHHHHHHHHHHHHHHHHHHHhHhhhhhccCHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccc
Q psy11310         81 RFSSAS   86 (98)
Q Consensus        81 ~~~~~~   86 (98)
                      +++-+.
T Consensus       132 saah~L  137 (162)
T 1k04_A          132 TAAHAL  137 (162)
T ss_dssp             HHHHHH
T ss_pred             hhhHHH
Confidence            876543

>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A

Probab=100.00  E-value=6.8e-39  Score=247.35  Aligned_cols=85  Identities=42%  Similarity=0.652  Sum_probs=82.4

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310          1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR   80 (98)
Q Consensus         1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML   80 (98)
                      |++++||+|+++||+||++||+||++||+++|.||+++|||||||||+|||||+|||++|||||||++|||++||||+||
T Consensus        29 I~~a~peeYv~lVK~VGl~LR~LL~sVDel~~~Lp~Sa~rEIEma~KvLnKDM~ELIsaMKLaqq~~~TtL~~EyRK~ML  108 (215)
T 2l6f_A           29 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKMKLAQQYVMTSLQQEYKKQML  108 (215)
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q psy11310         81 RFSSA   85 (98)
Q Consensus        81 ~~~~~   85 (98)
                      +++-+
T Consensus       109 saaH~  113 (215)
T 2l6f_A          109 TAAHA  113 (215)
Confidence            87644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d1k04a_	142	a.24.14.1 (A:) FAT domain of focal adhesion kinase	1e-29

>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAT domain of focal adhesion kinase
family: FAT domain of focal adhesion kinase
domain: FAT domain of focal adhesion kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (252), Expect = 1e-29
 Identities = 36/77 (46%), Positives = 49/77 (63%)

Query: 1   VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
           +Q    E Y+ +VK VG  LR LL +VD  + + P S H+EIE+A K+L+ D+GEL+  M
Sbjct: 35  IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 94

Query: 61  KLAHTYSHTSLDNVYRK 77
           KLA  Y  TSL   Y+K
Sbjct: 95  KLAQQYVMTSLQQEYKK 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1k04a_	142	FAT domain of focal adhesion kinase {Human (Homo s	100.0

>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAT domain of focal adhesion kinase
family: FAT domain of focal adhesion kinase
domain: FAT domain of focal adhesion kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-42  Score=253.31  Aligned_cols=85  Identities=44%  Similarity=0.688  Sum_probs=82.4

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310          1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR   80 (98)
Q Consensus         1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML   80 (98)
                      |++++||+|+++||+||++||+||+|||+++|.||+++|+|||||||+|||||+|||++|||||||+.|||++||||+||
T Consensus        35 v~~~~~~~Y~~lVK~VG~~Lr~Ll~svD~~~~~lp~~~~~eIema~klLskDm~eLi~~MklAqq~~~ttl~~eyrr~ML  114 (142)
T d1k04a_          35 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKKQML  114 (142)
T ss_dssp             HSCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHH
T ss_pred             HhhcCchHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q psy11310         81 RFSSA   85 (98)
Q Consensus        81 ~~~~~   85 (98)
                      +++-+
T Consensus       115 saaH~  119 (142)
T d1k04a_         115 TAAHA  119 (142)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754